Query 011806
Match_columns 477
No_of_seqs 242 out of 1914
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02312 acyl-CoA oxidase 100.0 1.7E-86 3.6E-91 708.3 48.0 473 4-476 10-484 (680)
2 PLN02636 acyl-coenzyme A oxida 100.0 2.4E-81 5.1E-86 670.3 45.4 452 4-476 17-482 (686)
3 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 6.3E-81 1.4E-85 612.7 31.4 446 21-476 7-461 (661)
4 KOG0139 Short-chain acyl-CoA d 100.0 5.9E-76 1.3E-80 549.7 20.1 360 51-467 36-398 (398)
5 cd01150 AXO Peroxisomal acyl-C 100.0 3.9E-71 8.4E-76 588.9 40.4 423 39-476 8-441 (610)
6 KOG0140 Medium-chain acyl-CoA 100.0 3.1E-72 6.8E-77 515.8 21.4 370 50-476 26-401 (408)
7 KOG0141 Isovaleryl-CoA dehydro 100.0 9.4E-71 2E-75 506.3 19.9 370 51-476 40-416 (421)
8 PTZ00460 acyl-CoA dehydrogenas 100.0 2E-68 4.3E-73 567.3 40.5 411 38-476 8-428 (646)
9 PLN02443 acyl-coenzyme A oxida 100.0 4.3E-67 9.3E-72 557.9 40.5 409 39-476 12-437 (664)
10 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.4E-61 3E-66 494.3 35.1 368 48-476 9-379 (386)
11 cd01161 VLCAD Very long chain 100.0 1.6E-61 3.5E-66 497.1 34.4 378 44-476 19-403 (409)
12 PRK03354 crotonobetainyl-CoA d 100.0 6.7E-61 1.5E-65 488.1 34.0 371 48-476 1-374 (380)
13 cd01162 IBD Isobutyryl-CoA deh 100.0 1.4E-60 3E-65 485.2 35.7 368 52-476 1-371 (375)
14 PRK12341 putative acyl-CoA deh 100.0 1.2E-60 2.5E-65 486.6 34.2 369 48-475 1-374 (381)
15 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 1.8E-60 3.9E-65 483.8 34.8 366 52-476 1-370 (372)
16 cd01160 LCAD Long chain acyl-C 100.0 2.5E-60 5.5E-65 483.0 35.7 366 54-476 1-370 (372)
17 cd01157 MCAD Medium chain acyl 100.0 1.7E-60 3.7E-65 485.2 34.3 368 52-476 1-374 (378)
18 PLN02519 isovaleryl-CoA dehydr 100.0 1.4E-60 3.1E-65 489.2 33.6 370 50-475 24-398 (404)
19 TIGR03203 pimD_small pimeloyl- 100.0 9.6E-61 2.1E-65 485.5 31.3 367 51-475 3-374 (378)
20 cd01156 IVD Isovaleryl-CoA deh 100.0 4.3E-60 9.4E-65 482.0 35.1 369 52-476 2-373 (376)
21 PTZ00461 isovaleryl-CoA dehydr 100.0 7.3E-60 1.6E-64 484.8 34.1 368 48-475 32-403 (410)
22 PLN02526 acyl-coenzyme A oxida 100.0 1.8E-59 3.9E-64 481.8 36.5 368 48-476 25-395 (412)
23 KOG0136 Acyl-CoA oxidase [Lipi 100.0 2E-60 4.3E-65 478.9 26.2 414 39-476 18-445 (670)
24 PRK09463 fadE acyl-CoA dehydro 100.0 1.3E-58 2.8E-63 495.9 34.5 366 52-473 79-466 (777)
25 cd01158 SCAD_SBCAD Short chain 100.0 5.1E-58 1.1E-62 466.3 35.3 366 55-476 2-370 (373)
26 KOG0138 Glutaryl-CoA dehydroge 100.0 1.7E-58 3.7E-63 423.9 23.9 375 43-476 46-423 (432)
27 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 6.5E-57 1.4E-61 461.0 36.6 368 56-476 3-391 (394)
28 PRK13026 acyl-CoA dehydrogenas 100.0 9.8E-57 2.1E-61 479.6 34.5 338 93-473 104-465 (774)
29 KOG0137 Very-long-chain acyl-C 100.0 7E-58 1.5E-62 454.5 22.7 348 90-475 102-456 (634)
30 TIGR03204 pimC_large pimeloyl- 100.0 3.7E-56 8E-61 454.8 33.2 367 51-476 3-391 (395)
31 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.7E-55 3.7E-60 450.8 32.8 367 54-475 7-384 (393)
32 cd01153 ACAD_fadE5 Putative ac 100.0 8.2E-55 1.8E-59 447.0 36.5 373 60-475 2-404 (407)
33 cd01152 ACAD_fadE6_17_26 Putat 100.0 3.4E-54 7.3E-59 439.0 32.2 360 54-476 1-377 (380)
34 PTZ00456 acyl-CoA dehydrogenas 100.0 1.8E-53 3.8E-58 451.8 36.1 377 58-475 62-476 (622)
35 PLN02876 acyl-CoA dehydrogenas 100.0 1.2E-53 2.6E-58 471.7 34.5 373 50-476 400-815 (822)
36 cd01154 AidB Proteins involved 100.0 9.7E-52 2.1E-56 424.8 33.9 339 100-476 68-415 (418)
37 cd01163 DszC Dibenzothiophene 100.0 1.5E-51 3.2E-56 419.3 30.8 344 90-475 15-369 (377)
38 PRK11561 isovaleryl CoA dehydr 100.0 4.9E-49 1.1E-53 409.1 34.8 335 100-476 89-438 (538)
39 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.5E-48 3.2E-53 389.7 33.0 325 55-475 2-327 (327)
40 cd01159 NcnH Naphthocyclinone 100.0 2.7E-47 5.8E-52 387.0 24.2 340 90-476 15-367 (370)
41 PTZ00457 acyl-CoA dehydrogenas 100.0 1.3E-44 2.8E-49 373.5 32.0 299 97-470 50-362 (520)
42 KOG1469 Predicted acyl-CoA deh 100.0 1.2E-42 2.6E-47 315.0 16.1 333 103-475 32-378 (392)
43 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 6.1E-23 1.3E-27 181.1 17.2 148 317-476 1-148 (150)
44 TIGR02309 HpaB-1 4-hydroxyphen 99.9 3.1E-22 6.6E-27 206.7 24.4 235 165-445 129-391 (477)
45 PF08028 Acyl-CoA_dh_2: Acyl-C 99.6 1.2E-14 2.5E-19 125.8 11.4 128 332-466 1-133 (134)
46 PF02771 Acyl-CoA_dh_N: Acyl-C 99.6 8.7E-16 1.9E-20 128.7 3.6 110 53-176 1-113 (113)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.5 7.9E-14 1.7E-18 99.2 5.9 51 180-238 1-51 (52)
48 TIGR02310 HpaB-2 4-hydroxyphen 98.8 1.2E-06 2.7E-11 90.9 24.3 239 164-440 137-398 (519)
49 COG2368 Aromatic ring hydroxyl 98.8 5.5E-07 1.2E-11 90.6 20.6 233 165-443 133-397 (493)
50 PF14749 Acyl-CoA_ox_N: Acyl-c 98.3 1.7E-06 3.7E-11 73.7 7.7 119 44-178 1-125 (125)
51 PF11794 HpaB_N: 4-hydroxyphen 97.5 0.00087 1.9E-08 64.0 10.3 121 164-297 124-263 (264)
52 PF03241 HpaB: 4-hydroxyphenyl 92.3 3.2 6.9E-05 38.4 12.6 75 370-445 44-119 (205)
53 PTZ00457 acyl-CoA dehydrogenas 90.4 2.9 6.2E-05 44.4 11.5 90 344-447 416-505 (520)
54 KOG0137 Very-long-chain acyl-C 86.4 8 0.00017 40.8 11.2 93 335-440 511-603 (634)
55 PF10929 DUF2811: Protein of u 41.2 89 0.0019 22.4 5.0 37 56-111 7-43 (57)
56 PRK09463 fadE acyl-CoA dehydro 28.0 4.6E+02 0.01 29.6 10.6 93 370-475 563-658 (777)
No 1
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=1.7e-86 Score=708.31 Aligned_cols=473 Identities=81% Similarity=1.309 Sum_probs=436.2
Q ss_pred HhhHHHHHHcccCCC--CCcccccccccccCCCCCCCcCCCCCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCc
Q 011806 4 AIHRTIIIKNHLLQP--NSDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEK 81 (477)
Q Consensus 4 ~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (477)
++||+.+|++||.++ +....+..++|..+.+|+....++||+++|+.+|++++.++|++++++++++|.|..+.++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p~f~~~~~~~~ 89 (680)
T PLN02312 10 AARRAHVLANHLAQSPPSPNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSDLFNSKRRGGR 89 (680)
T ss_pred HHHHHHHHHHhccCCCCCCcccCCchhhhhcCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCccccccccccc
Confidence 449999999999874 344568889999999999888899999999999999888999999999999999987644443
Q ss_pred cccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCC
Q 011806 82 VYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGT 161 (477)
Q Consensus 82 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt 161 (477)
+...|.+..+.++.++++.+.++++.+.|++++.+|+++.+++...+.++|++++.|++++..+++|+++++.+|..+||
T Consensus 90 ~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GT 169 (680)
T PLN02312 90 VFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGT 169 (680)
T ss_pred cccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCC
Confidence 44567777899999999999999999999999999987545677788999999999999888899998899999999999
Q ss_pred HHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeC
Q 011806 162 QRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEIN 241 (477)
Q Consensus 162 ~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~ 241 (477)
++|+++|||++.+|++++||++|||+||||+.+++|+|++|+++|+|+|||||++|+|+||+|++.+|++++|+||+..+
T Consensus 170 eeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~ 249 (680)
T PLN02312 170 KRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHIN 249 (680)
T ss_pred HHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999878999999999999999999994349999999999877
Q ss_pred CCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHH
Q 011806 242 GKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFA 321 (477)
Q Consensus 242 ~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~ 321 (477)
++++|+++|+||++|.++.++|||++.++++|+|+++++++.|.|+||+||++++|+++++|+++|.|.+++.+++.||.
T Consensus 250 ~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~ 329 (680)
T PLN02312 250 GKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFG 329 (680)
T ss_pred CCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHH
Confidence 77789999999988777788999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011806 322 AFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMY 401 (477)
Q Consensus 322 ~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~ 401 (477)
.++..+..+|+.+++.++|++++|+++|++|++.|+|||.+++++|.||++||.+|++|++|++.+++++....++.+.+
T Consensus 330 ~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~ 409 (680)
T PLN02312 330 AFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIY 409 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888899999999999999999999999999999888888
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 402 VNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+....+..++.+..++++|++++|.+.+++++|+|+|||+||+.++++++++||+++..|+||+|+|++++|||+
T Consensus 410 ~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ 484 (680)
T PLN02312 410 VKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKA 484 (680)
T ss_pred hcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence 764433446788999999999999999999999999999999999999999999999999999999999999973
No 2
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.4e-81 Score=670.28 Aligned_cols=452 Identities=39% Similarity=0.655 Sum_probs=402.5
Q ss_pred HhhHHHHHHcccCCCC--CcccccccccccCCCCCCCcCCCCCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCc
Q 011806 4 AIHRTIIIKNHLLQPN--SDQILTTNACLSYSPPELNEVYDFDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEK 81 (477)
Q Consensus 4 ~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (477)
++|||++|++||.+.. .+..+.+.+|... ..++||+++|+.+|++++.++++++++|++++|.|..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~------ 84 (686)
T PLN02636 17 AARRIQRLSLHLSPVPLPKEEQLSRLVCARS------IKLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQT------ 84 (686)
T ss_pred HHHHHHHHHHhcCcCCCCCcccCCccccccc------ccCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccC------
Confidence 5699999999998663 2234566667643 4789999999999999999999999999999876632
Q ss_pred cccCCcccCCHHHHHHHH-HHHHHHHHHcCccccccccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccC
Q 011806 82 VYVAPDYNQTMEQQREMT-MKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFG 160 (477)
Q Consensus 82 ~~~~p~~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~g 160 (477)
| ...++++.++++ .++++.+.+.|++++.+|++ ++..++.+.|++++.|++++..+++|+++++.+|..+|
T Consensus 85 ----~-~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~G 156 (686)
T PLN02636 85 ----P-VEISKDEHRELCMRQLTGLVREAGIRPMKYLVE---DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLG 156 (686)
T ss_pred ----C-chhhHHHhhhhHHHHHHHHHHhcCccccccccC---CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhC
Confidence 2 135677788888 88888999999999999876 56778888999999999988889999989999999999
Q ss_pred CHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeee
Q 011806 161 TQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEI 240 (477)
Q Consensus 161 t~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~ 240 (477)
|++|+++|||++.+|++++||++|||+||||+.+++|+|++|+++|+|+|||||++|+||||+|++.+||+++|+||+..
T Consensus 157 TeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~ 236 (686)
T PLN02636 157 TKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKL 236 (686)
T ss_pred CHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecC
Confidence 99999999999999999999999999999999999999999977799999999999999999999755999999999974
Q ss_pred C------CCcCceEEEEEEeeC-CCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccC
Q 011806 241 N------GKNQGVHAFICQIRD-AAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSI 313 (477)
Q Consensus 241 ~------~~~~g~~~flV~~~~-~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~ 313 (477)
+ ++++|+++||||+++ .+|.+.|||++.++++|+|+++++++.|.||||+||++++|+++++|+++|+|.+++
T Consensus 237 ~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~ 316 (686)
T PLN02636 237 PTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSL 316 (686)
T ss_pred CCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccC
Confidence 2 136799999999986 378889999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHH
Q 011806 314 KDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCA 393 (477)
Q Consensus 314 ~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~ 393 (477)
+++++||..++..+..+|+.+++.++|++++|+++|++|+..|+|||+ ++.+|.+|++||.+|++|++|++.+++++++
T Consensus 317 ~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a 395 (686)
T PLN02636 317 PTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFA 395 (686)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999996 4568999999999999999999999997755
Q ss_pred HHHHHHHHH----hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHH
Q 011806 394 ANYLKMMYV----NRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVL 469 (477)
Q Consensus 394 ~~~~a~~~~----~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl 469 (477)
.+.+.+.+. ........+.+..++++|++++|.+.+++++|+|+|||+||+.+++++++|||+++..|+||+|+|+
T Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl 475 (686)
T PLN02636 396 TEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVL 475 (686)
T ss_pred HHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHH
Confidence 555544443 2111112467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q 011806 470 MQQVLLS 476 (477)
Q Consensus 470 ~~~va~~ 476 (477)
+++|||+
T Consensus 476 ~~~iAr~ 482 (686)
T PLN02636 476 LQQVAAD 482 (686)
T ss_pred HHHHHHH
Confidence 9999974
No 3
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.3e-81 Score=612.69 Aligned_cols=446 Identities=57% Similarity=0.948 Sum_probs=417.1
Q ss_pred cccccccccccCCC-CCCCcCCCCCHHHHhhhcCCCc--HHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHH
Q 011806 21 DQILTTNACLSYSP-PELNEVYDFDLKEMRKLLDGHN--LQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQRE 97 (477)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~m~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 97 (477)
.++++..+|..++| ++.+++.+||+++|+.++++|+ .+++..+...++++|.+ ...|.+..++|+.|+
T Consensus 7 ~~~~~~~p~l~~~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~---------f~~p~~~l~me~qRe 77 (661)
T KOG0135|consen 7 NPSLSLEPCLPSSPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDL---------FVSPDRNLSMEEQRE 77 (661)
T ss_pred CCCccccccCCCCCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCe---------ecCcccccCHHHHHH
Confidence 34567778887766 5667899999999999999985 68899999999999843 245777889999999
Q ss_pred HHHHHHHHHHHcCccccccccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccce
Q 011806 98 MTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVV 177 (477)
Q Consensus 98 ~~~~~~~~l~~~Gl~~~~~p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~ 177 (477)
+...+|+.|.+.|.+..+.-+........+..+.|.++.+|.|++..+++|+.+|+.++..+||+.|++ |+.++.+-++
T Consensus 78 l~~~r~~~l~~~gv~~~~~~~~~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev 156 (661)
T KOG0135|consen 78 LCMKRIKRLVELGVFKFWLVEDGPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEV 156 (661)
T ss_pred HHHHHHHHHHHhccCcceeecCchHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhccee
Confidence 999999999999998877766655577889999999999999999999999999999999999999988 9999999999
Q ss_pred EEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCC
Q 011806 178 LGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA 257 (477)
Q Consensus 178 ~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~ 257 (477)
.|||||||.+||||+.+++|||++|+.+++|+||||+.+..|+||+|++.||+|++|||++...+.+.|+|.|||++||.
T Consensus 157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdp 236 (661)
T KOG0135|consen 157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDP 236 (661)
T ss_pred eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-CCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHH
Q 011806 258 A-GNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAG 336 (477)
Q Consensus 258 ~-~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa 336 (477)
+ +..+|||+|.|+++|.|++|+|||.++|+|||||++|+|.++++|++||+|.|+++++++.|..+++.|..||++++.
T Consensus 237 kT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~ 316 (661)
T KOG0135|consen 237 KTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIAS 316 (661)
T ss_pred cccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHH
Confidence 5 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chh
Q 011806 337 SSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQS-----NKT 411 (477)
Q Consensus 337 ~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~-----~~~ 411 (477)
.++|.++-++.+|++|+..|+|||.+.+++|.+|.+||.+|+||.++++.+++++....++...+.+..... .++
T Consensus 317 ~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~ke 396 (661)
T KOG0135|consen 317 SAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKE 396 (661)
T ss_pred HHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhH
Confidence 999999999999999999999999766669999999999999999999999999999999998887654332 388
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 412 IHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 412 ~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+++.++.+|.++||...+++++|+++|||+||..+|+++.+.-|-+.++||||||+||+||+++.
T Consensus 397 iHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~ 461 (661)
T KOG0135|consen 397 IHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNA 461 (661)
T ss_pred HHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999863
No 4
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-76 Score=549.69 Aligned_cols=360 Identities=20% Similarity=0.302 Sum_probs=343.8
Q ss_pred hcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHH
Q 011806 51 LLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRK 127 (477)
Q Consensus 51 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~ 127 (477)
.|++.+..+++.+++|.++ ++.|.. .++|++..+|..+++.+.++||+++-+|++||| ++...
T Consensus 36 ~l~E~e~~l~~tvrkfa~~-------------~i~Plv-~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~ 101 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQE-------------EIKPLV-REMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAA 101 (398)
T ss_pred hcCcHHHHHHHHHHHHHHH-------------hcchHH-HhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHH
Confidence 5778889999999999999 577875 689999999999999999999999999999998 78888
Q ss_pred HHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCe
Q 011806 128 LALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGE 207 (477)
Q Consensus 128 ~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~ 207 (477)
+.++||+++.|+|+++.+.+|+.+..+.|..+|+++||+.|+|. ..|+.++|||+|||+.|||+..+.|+|++++ +.
T Consensus 102 ~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~G--d~ 178 (398)
T KOG0139|consen 102 AIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDG--DD 178 (398)
T ss_pred HHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcC--Ce
Confidence 99999999999999999999999999999999999999988876 5789999999999999999999999999987 99
Q ss_pred EEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEec
Q 011806 208 FIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFD 287 (477)
Q Consensus 208 ~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~ 287 (477)
|+|| |+|.||||+.. |+|++|||.++...+.+|+++|+||++ .||+++....+|+|||+++++.+.|+
T Consensus 179 ~viN-----GsKmWItN~~~-A~~~lVfan~d~~~~~Kgit~fiV~rd------~~Gl~~~k~eDKLGmRaSsTcql~fe 246 (398)
T KOG0139|consen 179 YVIN-----GSKMWITNAGE-ADWFLVFANADPSKGYKGITCFIVPRD------TPGLSLGKKEDKLGMRASSTCQLHFE 246 (398)
T ss_pred EEEe-----cceeeecCCcc-cceEEEEEecChhhccCceeEEEeeCC------CCCcccCCccccccccccceeeEEec
Confidence 9999 99999999997 999999999987778899999999965 79999999999999999999999999
Q ss_pred ceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCc
Q 011806 288 NVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPE 367 (477)
Q Consensus 288 ~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~ 367 (477)
||+||.+++||. +|.||++.+..|+.+|+.+++..+|.+++|+|.++.|+++|.|||++
T Consensus 247 dVrVpks~IlGe----------------~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~----- 305 (398)
T KOG0139|consen 247 DVRVPKSSILGE----------------YGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKR----- 305 (398)
T ss_pred cccccchhhccc----------------CCcchHHHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcch-----
Confidence 999999999997 78999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcC
Q 011806 368 VLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTEN 447 (477)
Q Consensus 368 ~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~ 447 (477)
|.++|.+||+||++.+++|++|+++|+++++-+. +.....+++|+|+++++.+..+...|+|+.||.||+.++
T Consensus 306 --l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~-----G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~ 378 (398)
T KOG0139|consen 306 --LLDFQGLQHQIADMATEIEAARLLVYNAARMKDQ-----GLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDF 378 (398)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999886 577888999999999999999999999999999999999
Q ss_pred chHHhhhcccccccccccHH
Q 011806 448 RVGHLKGEFDVQLTFEGDNN 467 (477)
Q Consensus 448 ~l~r~~rda~~~~~~~G~~~ 467 (477)
|.+++|||+++..||||+.+
T Consensus 379 paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 379 PAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred cHHHHhhhceeeeeecCCCC
Confidence 99999999999999999864
No 5
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=3.9e-71 Score=588.94 Aligned_cols=423 Identities=42% Similarity=0.675 Sum_probs=366.6
Q ss_pred cCCCCCHHHHhhhcCCCc--HHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCcccccc
Q 011806 39 EVYDFDLKEMRKLLDGHN--LQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWL 116 (477)
Q Consensus 39 ~~~~~~~~~m~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~ 116 (477)
..++||+++|+.+|++.+ .+.+.++.++++++|.|.... ......|+...+...++....+. .
T Consensus 8 ~~~~f~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~f~~~~------------~~~~~~r~~~~~~~~~~~~~~~~---~ 72 (610)
T cd01150 8 ASATFDWKALTHILEGGEENLRRKREVERELESDPLFQREL------------PSKHLSREELYEELKRKAKTDVE---R 72 (610)
T ss_pred ccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccccC------------CchHHHHHHHHHHHHHHHHHHHH---H
Confidence 568899999999999933 467888999999999987541 12223333333322222111111 1
Q ss_pred ccccc-hHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCC
Q 011806 117 TAKGA-EAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGI 195 (477)
Q Consensus 117 p~~~G-g~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~ 195 (477)
+.+.+ .++.+...+.|++++.|++++..+++|+++++.+|..+||++|+++|||++.+|++++||++|||+||||+.++
T Consensus 73 ~~~~~~~~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~l 152 (610)
T cd01150 73 MGELMADDPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGL 152 (610)
T ss_pred HHhhccCCHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccc
Confidence 12222 25567778899999999998888899988999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCC-CCCCCCCeEEccCCCcc
Q 011806 196 ETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA-AGNICPNIRIADCGHKI 274 (477)
Q Consensus 196 ~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~-~~~~~pGv~i~~~~~~~ 274 (477)
+|+|++|+++++|+|||||.+|+|+||+|++.+|++++|+||+..+++++|+++|+||+++. ++++.|||++.++++|+
T Consensus 153 eTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~ 232 (610)
T cd01150 153 ETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKM 232 (610)
T ss_pred eeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeeccccc
Confidence 99999998889999999999999999999865599999999998777778999999999874 56889999999999999
Q ss_pred ccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011806 275 GLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSL 354 (477)
Q Consensus 275 Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~ 354 (477)
|+++++++.|.|+||+||++++|+++++|+++|.|.+++..++.+|..++..+..+|+.+++.++|++++|++++++|++
T Consensus 233 G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~ 312 (610)
T cd01150 233 GLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSA 312 (610)
T ss_pred CCCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCchhhHHHHHHHHHHHHHHH
Q 011806 355 SRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVN-------RTPQSNKTIHVVSSAFKAILTWHN 427 (477)
Q Consensus 355 ~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~K~~a~~~a 427 (477)
.|+|||.|++++|.+|++||.+|++|+++++.+++++.+.+.+...+.. ...+..++.+..++++|++++|.+
T Consensus 313 ~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a 392 (610)
T cd01150 313 VRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTA 392 (610)
T ss_pred eeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999888999999999999999999999999988776665544322 111112467889999999999999
Q ss_pred HHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 428 MRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 428 ~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.+++++|+|+|||+||+.++++++++||++...|+||+|+|++++++|+
T Consensus 393 ~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ 441 (610)
T cd01150 393 AQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANY 441 (610)
T ss_pred HHHHHHHHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999863
No 6
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-72 Score=515.83 Aligned_cols=370 Identities=21% Similarity=0.270 Sum_probs=351.7
Q ss_pred hhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHH
Q 011806 50 KLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELR 126 (477)
Q Consensus 50 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~ 126 (477)
+-|+++|.++++.+++|.++ ++.|.. .++|+.+++|.+++++..++|+....+|+.+|| +..+
T Consensus 26 f~L~e~qke~q~~A~kFa~~-------------e~~P~a-ae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~ 91 (408)
T KOG0140|consen 26 FGLTEDQKEFQEAARKFAKD-------------EMIPNA-AEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLD 91 (408)
T ss_pred cCcchHHHHHHHHHHHHHHH-------------hhccch-hhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHH
Confidence 56888999999999999999 688886 689999999999999999999999999999998 6778
Q ss_pred HHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCC
Q 011806 127 KLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206 (477)
Q Consensus 127 ~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~ 206 (477)
.+.++|+|+++|.++...+..|. ++.++|..+|+++||++||+++....+++++++|||+.|||+.++.|+|++.+ |
T Consensus 92 t~lI~E~LayGCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkG--D 168 (408)
T KOG0140|consen 92 TCLIFEALAYGCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKG--D 168 (408)
T ss_pred HHHHHHHHHccchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcC--C
Confidence 88999999999999999999985 99999999999999999999999999999999999999999999999999986 9
Q ss_pred eEEEecCCCCceeeeecCccccccEEEEEEEeeeC---CCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccccee
Q 011806 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEIN---GKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGR 283 (477)
Q Consensus 207 ~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~---~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~ 283 (477)
+|||| |+|.||||+++ |+|++|+||++++ ...++++.|+|+.+ +||++.+....+||.|.+++-.
T Consensus 169 eYiiN-----GsKawItg~G~-anwyfVlaRtd~~pk~p~~Kaft~fiVe~d------TpGlt~GkKE~nmGqr~sdTR~ 236 (408)
T KOG0140|consen 169 EYIIN-----GSKAWITGAGH-ANWYFVLARTDPDPKTPAGKAFTAFIVEGD------TPGLTRGKKEKNMGQRCSDTRG 236 (408)
T ss_pred EEEEc-----CceeeeecCCc-cceEEEEEecCCCCCCCCCcceEEEEEeCC------CCCcCcChhhhcccccCCCCce
Confidence 99999 99999999997 9999999999986 34678999999965 8999999999999999999999
Q ss_pred EEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 011806 284 IWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITP 363 (477)
Q Consensus 284 i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~ 363 (477)
|.|+||+||.+|+|+. ++.||.+.+..|+.+|..+|+.++|++.++|+.+.+|+.+|++||.|
T Consensus 237 itFEDvrVP~~Nvlg~----------------~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~- 299 (408)
T KOG0140|consen 237 ITFEDVRVPKENVLGA----------------PGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTP- 299 (408)
T ss_pred eeeeecccchhccccC----------------CCccceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcC-
Confidence 9999999999999997 89999999999999999999999999999999999999999999999
Q ss_pred CCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011806 364 NGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGL 443 (477)
Q Consensus 364 ~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~ 443 (477)
|+++|.+|..||+|...++.+|++++.+++.+|+. .+. ...++++|.++++.|..++..++|++||.||
T Consensus 300 ------iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~----r~~-sy~aSiAK~fA~D~an~~at~AvQifGG~Gf 368 (408)
T KOG0140|consen 300 ------IANHQAVQFMLADMAINLELARLMTRNAAWEVDNG----RRN-SYYASIAKLFATDTANQAATNAVQIFGGNGF 368 (408)
T ss_pred ------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----Ccc-hHHHHHHHHHhhhhHHHHHHHHHHhhccCCc
Confidence 99999999999999999999999999999999873 233 7899999999999999999999999999999
Q ss_pred cCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 444 KTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 444 ~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
..++|+++++||+++.+||||+++++|..|+|.
T Consensus 369 n~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ 401 (408)
T KOG0140|consen 369 NKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRS 401 (408)
T ss_pred cccccHHHHHhhhhhhHhhhchHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 7
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=9.4e-71 Score=506.32 Aligned_cols=370 Identities=18% Similarity=0.246 Sum_probs=351.6
Q ss_pred hcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHH--HHHHHHHHHHcCccccccccccch---HHH
Q 011806 51 LLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREM--TMKRISYLLERNVFEGWLTAKGAE---AEL 125 (477)
Q Consensus 51 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~ 125 (477)
-|++|+..+|+.++.|+++ ++.|.. .++|+..++ .+++|+++.+.|++|+..|++||| ++.
T Consensus 40 g~~~e~~~~r~sv~kF~qe-------------elaP~a-~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~ 105 (421)
T KOG0141|consen 40 GLSDEQDQLRESVRKFFQE-------------ELAPHA-SEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYL 105 (421)
T ss_pred CCCHHHHHHHHHHHHHHHH-------------hhcchh-hhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHH
Confidence 3889999999999999999 578865 789999888 678999999999999999999987 788
Q ss_pred HHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCC
Q 011806 126 RKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANT 205 (477)
Q Consensus 126 ~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~ 205 (477)
..+.++||++++..+.+..++.|.+++...|.+.|+++|+++|||++.+|+.+|+++||||+.|||+.++.+.|++++
T Consensus 106 ~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g-- 183 (421)
T KOG0141|consen 106 SHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKG-- 183 (421)
T ss_pred HHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecC--
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CeEEEecCCCCceeeeecCccccccEEEEEEEeeeC--CCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccccee
Q 011806 206 GEFIINTPCESAQKYWIGGAANHATHTIVFSQLEIN--GKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGR 283 (477)
Q Consensus 206 ~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~--~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~ 283 (477)
+.|||| |.|.||||++. ||.++|.|.++.. ...+|+++|+|+.. +||++..+.-+|+||||+++++
T Consensus 184 ~~yiLN-----GsK~witNG~~-advliVyAkTd~~a~~~~hGIt~FiVEkg------m~GFs~~~KLdKlGmrgsdTcE 251 (421)
T KOG0141|consen 184 DDYILN-----GSKFWITNGPD-ADVLIVYAKTDHSAVPPSHGITAFIVEKG------MPGFSTAQKLDKLGMRGSDTCE 251 (421)
T ss_pred CcEEec-----CcEEEEecCCC-CcEEEEEEecCCCCCCCcCceEEEEEcCC------CcccccchhhHhhcCCCCcchh
Confidence 999999 99999999997 9999999999876 35679999999965 8999999999999999999999
Q ss_pred EEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 011806 284 IWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITP 363 (477)
Q Consensus 284 i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~ 363 (477)
+.|+|++||++++||. +++|+.++|..|+..|+.+|+..+|+++.++|.+..|+++|++||++
T Consensus 252 LvFed~~vpas~ilg~----------------enkGvYvlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~- 314 (421)
T KOG0141|consen 252 LVFEDCKVPASNILGE----------------ENKGVYVLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKK- 314 (421)
T ss_pred eehhhccCcHHHhcCc----------------CCceEEEEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCc-
Confidence 9999999999999997 78999999999999999999999999999999999999999999999
Q ss_pred CCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011806 364 NGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGL 443 (477)
Q Consensus 364 ~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~ 443 (477)
|+.||.+|.++|+|+..+.+.|+.++.+++..|+ +.-....++++++|+++.+..++-+|+|++||.||
T Consensus 315 ------ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~-----g~~~~kdcag~il~aaE~~tqVald~iQ~~GGnGY 383 (421)
T KOG0141|consen 315 ------IGHFQLLQGKLADMYTTLCASRSYVYNVARACDA-----GNVDPKDCAGVILYAAEKATQVALDAIQCLGGNGY 383 (421)
T ss_pred ------hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCChhhhhhhhhhHhhhhHHHHHHHHhhccCccc
Confidence 9999999999999999999999999999998886 45667789999999999999999999999999999
Q ss_pred cCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 444 KTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 444 ~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
..++|.+|++||++++.|+.|++++.+..|+|.
T Consensus 384 ineyp~gr~lrDAklyeIgaGTsEirr~lIgRe 416 (421)
T KOG0141|consen 384 INEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRE 416 (421)
T ss_pred ccccchhhhhhhceeeeccCChHHHHHHHHHHH
Confidence 999999999999999999999999999999885
No 8
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2e-68 Score=567.29 Aligned_cols=411 Identities=29% Similarity=0.444 Sum_probs=352.1
Q ss_pred CcCCCCCHHHHhhhcCCCc--HHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccc
Q 011806 38 NEVYDFDLKEMRKLLDGHN--LQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGW 115 (477)
Q Consensus 38 ~~~~~~~~~~m~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~ 115 (477)
+..++||+++|+.+|.+.+ .+.+.++.++++++|.|... .+.+..+.++..+...+....+.+. ..
T Consensus 8 R~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~--------~~~~~lsr~e~~~~~~~k~~~~~~~--~~-- 75 (646)
T PTZ00460 8 RKQVQFPVLEMTHLLYGNKEQFETFLERQKFIDNEPMFKVH--------PDYYNWSRQDQILLNAEKTREAHKH--LN-- 75 (646)
T ss_pred hccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHhcCcccccC--------CCcccCCHHHHHHHHHHHHHHHHHH--cC--
Confidence 3568999999999998744 46788999999999999754 1223467787777777777777664 11
Q ss_pred cccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCC
Q 011806 116 LTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGI 195 (477)
Q Consensus 116 ~p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~ 195 (477)
+++ ...+ . ..-.+++....+++|+++++.+|..+||++|+++|||++.+|++++||++|||+||||+.++
T Consensus 76 -~~~----~~~~---~--~~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~l 145 (646)
T PTZ00460 76 -LAN----PNYY---T--PNLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNL 145 (646)
T ss_pred -chh----hhHH---h--hhhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccc
Confidence 111 0000 0 11225555566788888889999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCC-CCCCCCCeEEccCCCcc
Q 011806 196 ETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA-AGNICPNIRIADCGHKI 274 (477)
Q Consensus 196 ~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~-~~~~~pGv~i~~~~~~~ 274 (477)
+|+|++|+++|+|+|||||.+|+|+||+|++..||+++|+||+..+++++|+++|+||++|. +|.+.|||++.++++|+
T Consensus 146 eTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~ 225 (646)
T PTZ00460 146 ETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKM 225 (646)
T ss_pred eEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEecccccc
Confidence 99999997789999999999999999998433499999999998777778999999998874 56889999999999999
Q ss_pred ccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011806 275 GLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSL 354 (477)
Q Consensus 275 Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~ 354 (477)
|+++++++.|.|+||+||++++|+++++|+++|.|..+ + .+...+..+..+|+.+++.++|++++|++++++|++
T Consensus 226 G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~----g-~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~ 300 (646)
T PTZ00460 226 GYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQ----G-NPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSI 300 (646)
T ss_pred CcCCCCceEEEeceEEECHHHhCCcccccCCCCccccC----C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998653 1 145667788899999999999999999999999999
Q ss_pred hccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCC---C----chhhHHHHHHHHHHHHHHH
Q 011806 355 SRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQ---S----NKTIHVVSSAFKAILTWHN 427 (477)
Q Consensus 355 ~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~---~----~~~~~~~~~~~K~~a~~~a 427 (477)
+|+|||++ +++|.||++||.+|++|+++.+.+++++++.+++++.+++.... . .++.+..++++|++++|.+
T Consensus 301 ~R~QFg~~-~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a 379 (646)
T PTZ00460 301 YRQQFTND-NKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFV 379 (646)
T ss_pred ccccCCCC-CCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHH
Confidence 99999964 45699999999999999999999999999999999998753210 1 1235788999999999999
Q ss_pred HHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 428 MRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 428 ~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.+++++|+|+|||+||+.+++++++|||++...++||+|+++++++||.
T Consensus 380 ~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ 428 (646)
T PTZ00460 380 SNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARY 428 (646)
T ss_pred HHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999863
No 9
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=4.3e-67 Score=557.90 Aligned_cols=409 Identities=31% Similarity=0.537 Sum_probs=350.0
Q ss_pred cCCCCCHHHHhhhcCCCc--HHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHH----HHcCcc
Q 011806 39 EVYDFDLKEMRKLLDGHN--LQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYL----LERNVF 112 (477)
Q Consensus 39 ~~~~~~~~~m~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l----~~~Gl~ 112 (477)
..++||+++|+.+|++.+ .+.++++.++++++|.|... |.+..+.++..+...+....+ .+.|+.
T Consensus 12 ~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~---------~~~~~sr~e~~~~~~~~~~~~~~~~~~~~~~ 82 (664)
T PLN02443 12 NKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKD---------NRTRLSRKELFKNTLRKAAHAWKRIIELRLT 82 (664)
T ss_pred hcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCC---------CcccCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 568999999999999744 37899999999999999753 333467787777766544433 355443
Q ss_pred ccccccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCC
Q 011806 113 EGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNV 192 (477)
Q Consensus 113 ~~~~p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~ 192 (477)
. ++ . .. ... +.+.+..+.+|+++++.+|..+||++|+++|||++.+|++++||++|||+||||+
T Consensus 83 ~----~~--~--~~----~~~----~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv 146 (664)
T PLN02443 83 E----EE--A--GK----LRS----FVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNV 146 (664)
T ss_pred c----hh--H--HH----HHH----hcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccch
Confidence 1 11 0 01 111 2233334667877888999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCC-CCCCCCCeEEccCC
Q 011806 193 RGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA-AGNICPNIRIADCG 271 (477)
Q Consensus 193 ~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~-~~~~~pGv~i~~~~ 271 (477)
.+++|+|++|+++++|+|||||.+|+||||+|++.+|++++|+||+..+++++|+++|+||++|. +|.+.|||++.+++
T Consensus 147 ~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g 226 (664)
T PLN02443 147 QGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIG 226 (664)
T ss_pred hhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccc
Confidence 99999999998789999999999999999999854599999999998777788999999999874 67889999999999
Q ss_pred Cccc---cCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011806 272 HKIG---LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAI 348 (477)
Q Consensus 272 ~~~G---l~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~ 348 (477)
+|+| +++++++.|.|+||+||++++|+++++|+++|.|..+.. .....+..+..+|+.+++.++|++++|+++
T Consensus 227 ~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~----~~~~~~~~l~~~R~~i~a~a~g~~~~Al~i 302 (664)
T PLN02443 227 MKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDV----PRQLVYGTMVYVRQTIVADASTALSRAVCI 302 (664)
T ss_pred cccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 667999999999999999999999999999999986521 124567788899999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCchhhHHHHHHHHH
Q 011806 349 AIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTP-------QSNKTIHVVSSAFKA 421 (477)
Q Consensus 349 a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~K~ 421 (477)
+++|+..|+|||.|.+.+|.++++|+.+|++|+++++.+++++++.+++++.+++... ....+.+..++++|+
T Consensus 303 AvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka 382 (664)
T PLN02443 303 ATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKS 382 (664)
T ss_pred HHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHH
Confidence 9999999999998877789999999999999999999999999999999998874211 112346778999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 422 ILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 422 ~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+++|.+.+++++|+|+|||+||+.+++++++++|++...|+||+|+|+++++||+
T Consensus 383 ~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ 437 (664)
T PLN02443 383 LTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARF 437 (664)
T ss_pred HHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999863
No 10
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.4e-61 Score=494.28 Aligned_cols=368 Identities=21% Similarity=0.236 Sum_probs=334.1
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HH
Q 011806 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
|++.+++++.++++.+++|+++ ++.|.. .+.++.+.+|.+.|++|.+.||+++ +|+++|| ++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~ 73 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQE-------------ELAPRV-LEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSS 73 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHH-------------hcCccH-HHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCH
Confidence 6666888999999999999998 355653 3556667799999999999999999 9999987 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCC
Q 011806 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~ 204 (477)
.+...++|++++.|+++++.+.+|..++...|..+|+++|+++|++++.+|++++|+++|||++|||+.++.|+|++++
T Consensus 74 ~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~- 152 (386)
T cd01151 74 VAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDG- 152 (386)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEEC-
Confidence 8899999999999999888887776566677889999999999999999999999999999999999999999999986
Q ss_pred CCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeE
Q 011806 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRI 284 (477)
Q Consensus 205 ~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i 284 (477)
|||+|| |+|+||||+.. |||++|+|+++++ .++.+|+||.+ .|||++.+.|+++|+++++++.+
T Consensus 153 -~g~~ln-----G~K~~is~~~~-Ad~~lv~ar~~~~---~~~~~flVp~~------~~gv~i~~~~~~~G~~g~~s~~v 216 (386)
T cd01151 153 -GGYKLN-----GSKTWITNSPI-ADVFVVWARNDET---GKIRGFILERG------MKGLSAPKIQGKFSLRASITGEI 216 (386)
T ss_pred -CEEEEE-----EEEEeecCCCc-CCEEEEEEEECCC---CcEEEEEEcCC------CCCeecCCCCCCcCCCCCceeEE
Confidence 899999 99999999997 9999999998542 35889999965 69999999999999999999999
Q ss_pred EecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 011806 285 WFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPN 364 (477)
Q Consensus 285 ~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 364 (477)
.|+||+||++++|+. +.++......+...|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 217 ~f~~v~Vp~~~~l~~-----------------~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~-- 277 (386)
T cd01151 217 VMDNVFVPEENLLPG-----------------AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRP-- 277 (386)
T ss_pred EEccEEeCHHHcCCc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCc--
Confidence 999999999999984 3566777778889999999999999999999999999999999998
Q ss_pred CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011806 365 GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLK 444 (477)
Q Consensus 365 ~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~ 444 (477)
|+++|.+|++|++|.+++++++++++++++.++.. ......++++|.++++.+.++++.++|++||.||.
T Consensus 278 -----i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~-----~~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~ 347 (386)
T cd01151 278 -----LAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQG-----KATPEQISLLKRNNCGKALEIARTAREMLGGNGIS 347 (386)
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999998752 22345678999999999999999999999999999
Q ss_pred CcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 445 TENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 445 ~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.+++++|+|||+++..+++|++++++..+++.
T Consensus 348 ~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~ 379 (386)
T cd01151 348 DEYHIIRHMVNLESVNTYEGTHDIHALILGRA 379 (386)
T ss_pred CCCHHHHHHHhhhcceecCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998863
No 11
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.6e-61 Score=497.14 Aligned_cols=378 Identities=20% Similarity=0.297 Sum_probs=340.7
Q ss_pred CHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch-
Q 011806 44 DLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE- 122 (477)
Q Consensus 44 ~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg- 122 (477)
=|+.|+..+++++.++++.+++|++++ +.|. .+|+.+.+|.+.|++|.+.||+++.+|+++||
T Consensus 19 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~---~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~ 82 (409)
T cd01161 19 YPSVLTEEQTEELNMLVGPVEKFFEEV-------------NDPA---KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGL 82 (409)
T ss_pred CccccCccCCHHHHHHHHHHHHHHHHh-------------CCch---hhccccCCCHHHHHHHHhCCCCCCCCChhhCCC
Confidence 355677788888999999999999983 4453 34566778999999999999999999999987
Q ss_pred --HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEE
Q 011806 123 --AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTT 200 (477)
Q Consensus 123 --~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~ 200 (477)
++.+.+.++|++++ |+++++.+.+|..++...+..+|+++|+++|++++.+|+.++|+++|||++|||...++|+|+
T Consensus 83 g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~ 161 (409)
T cd01161 83 GLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAV 161 (409)
T ss_pred CCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEE
Confidence 78899999999999 999988888886555556888999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeee---CC-CcCceEEEEEEeeCCCCCCCCCeEEccCCCcccc
Q 011806 201 YDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEI---NG-KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGL 276 (477)
Q Consensus 201 ~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~---~~-~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl 276 (477)
+++++++|+|| |+|+||||+.. |||++|+|++.. ++ ...++++|+||.+ .|||++.++|+++|+
T Consensus 162 ~~~~g~g~~l~-----G~K~~vs~~~~-Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~------~~gv~~~~~~~~~G~ 229 (409)
T cd01161 162 LSEDGKHYVLN-----GSKIWITNGGI-ADIFTVFAKTEVKDATGSVKDKITAFIVERS------FGGVTNGPPEKKMGI 229 (409)
T ss_pred EcCCCCEEEEE-----eEEEeecCCCc-CCEEEEEEEcCCCCCCCCCCCceEEEEEeCC------CCCcccCCcccccCC
Confidence 97655789999 99999999997 999999999862 22 1356899999965 699999999999999
Q ss_pred CcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011806 277 NGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSR 356 (477)
Q Consensus 277 ~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R 356 (477)
+++++++|.|+||+||++++|+. ++.++..++..+..+|+.+++.++|+++++++.+++|+++|
T Consensus 230 ~g~~s~~v~~~~v~Vp~~~~lg~----------------~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R 293 (409)
T cd01161 230 KGSNTAEVYFEDVKIPVENVLGE----------------VGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNR 293 (409)
T ss_pred CCCCceEEEeccEEECHHHcCCC----------------CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999986 67788888889999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011806 357 RAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECRE 436 (477)
Q Consensus 357 ~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~ 436 (477)
+|||+| |.++|.+|++|+++.+++++++++++++++.+++.. ..+....++++|+++++.+.++++.|+|
T Consensus 294 ~~fg~~-------l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~---~~~~~~~~~~aK~~a~~~a~~v~~~a~~ 363 (409)
T cd01161 294 KQFGKK-------IHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGL---KAEYQIEAAISKVFASEAAWLVVDEAIQ 363 (409)
T ss_pred eeCCcc-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 999999999999999999999999999999987631 1235567899999999999999999999
Q ss_pred HhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 437 ACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 437 ~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
++||.||..+++++|+|||+++..+++|++++++.+|++.
T Consensus 364 ~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~ 403 (409)
T cd01161 364 IHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALT 403 (409)
T ss_pred HhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999863
No 12
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.7e-61 Score=488.08 Aligned_cols=371 Identities=15% Similarity=0.118 Sum_probs=330.9
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HH
Q 011806 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
|++.|+++++++++.+++|++++ .+.|. ..+.|+.+.+|.+.|+.|.+.||+++.+|+++|| ++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~------------~~~~~-~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~ 67 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASE------------NWEAY-FAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGF 67 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc------------cCChh-HHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCH
Confidence 34558889999999999999984 12232 2456777789999999999999999999999987 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCC
Q 011806 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~ 204 (477)
.+++.++|++++.|+|+++.+.+|. ....+..+|+++|+++||+++.+|+.+.|+++|||++|||+..+.|+|++++
T Consensus 68 ~~~~~~~~~la~~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~- 144 (380)
T PRK03354 68 VTLAAVWMELGRLGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRN- 144 (380)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeC-
Confidence 9999999999999999887666552 3456888999999999999999999999999999999999999999999886
Q ss_pred CCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeE
Q 011806 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRI 284 (477)
Q Consensus 205 ~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i 284 (477)
|+|+|| |+|+||||+.+ |||++|+|++..+.+..++.+|+||.+ .|||++. .|+++|++++++++|
T Consensus 145 -~g~~ln-----G~K~fis~~~~-ad~~~v~a~~~~~~~~~~~~~~lv~~~------~~gv~~~-~~~~~G~r~~~~~~v 210 (380)
T PRK03354 145 -GKVYLN-----GSKCFITSSAY-TPYIVVMARDGASPDKPVYTEWFVDMS------KPGIKVT-KLEKLGLRMDSCCEI 210 (380)
T ss_pred -CEEEEe-----eEEEEEcCCCc-CCEEEEEEEcCCCCCCCceeEEEEECC------CCceEec-cccccCCCCCCeEEE
Confidence 899999 99999999997 999999999753333346788999976 5999986 589999999999999
Q ss_pred EecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 011806 285 WFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPN 364 (477)
Q Consensus 285 ~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 364 (477)
.|+||+||++++++. ++.|+......+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 211 ~f~~v~Vp~~~~lg~----------------~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~-- 272 (380)
T PRK03354 211 TFDDVELDEKDMFGR----------------EGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEA-- 272 (380)
T ss_pred EEccEEecHHHcCCC----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc--
Confidence 999999999999996 66788777777888999999999999999999999999999999998
Q ss_pred CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011806 365 GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLK 444 (477)
Q Consensus 365 ~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~ 444 (477)
|+++|.+|++|++|.+.+++++++++++++.++.. .......+++|+++++.+.++++.|+|++||.||.
T Consensus 273 -----i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~-----~~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~ 342 (380)
T PRK03354 273 -----IGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNG-----TITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIA 342 (380)
T ss_pred -----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCceec
Confidence 99999999999999999999999999999888752 22345678999999999999999999999999999
Q ss_pred CcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 445 TENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 445 ~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
++++++|+|||+++..+++|++++++..|+|.
T Consensus 343 ~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~ 374 (380)
T PRK03354 343 GNHRISRFWRDLRVDRVSGGSDEMQILTLGRA 374 (380)
T ss_pred CCChHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999863
No 13
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=1.4e-60 Score=485.17 Aligned_cols=368 Identities=20% Similarity=0.290 Sum_probs=336.1
Q ss_pred cCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHH
Q 011806 52 LDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKL 128 (477)
Q Consensus 52 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~ 128 (477)
+++++.++++.+++|++++ +.|.. ...|+.+.+|.+.|+.|.+.||+++.+|+++|| ++.+.+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~-------------~~~~a-~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~ 66 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKE-------------MAPHA-ADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDAS 66 (375)
T ss_pred CCHHHHHHHHHHHHHHHHh-------------CCcch-hhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHH
Confidence 4667889999999999883 55654 456777889999999999999999999999987 788999
Q ss_pred HHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeE
Q 011806 129 ALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEF 208 (477)
Q Consensus 129 ~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ 208 (477)
.++|++++.|+++++.+.+|. +++..+..+|+++|+++|++++.+|+.++++++|||++|||...++|+|++++ ++|
T Consensus 67 ~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~--~g~ 143 (375)
T cd01162 67 IIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREG--DHY 143 (375)
T ss_pred HHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeC--CEE
Confidence 999999999999988888885 56777888999999999999999999999999999999999999999999986 899
Q ss_pred EEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecc
Q 011806 209 IINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDN 288 (477)
Q Consensus 209 ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~ 288 (477)
+|| |+|+||+|+.. ||+++|+|++.+++ ..++++|+||.+ .|||++.+.|+++|++++++++|.|+|
T Consensus 144 ~l~-----G~k~~vs~~~~-ad~~~v~a~~~~~~-~~~~~~~lv~~~------~~gv~v~~~~~~~g~~~~~~~~l~f~~ 210 (375)
T cd01162 144 VLN-----GSKAFISGAGD-SDVYVVMARTGGEG-PKGISCFVVEKG------TPGLSFGANEKKMGWNAQPTRAVIFED 210 (375)
T ss_pred EEE-----EEEEEecCCCC-CCEEEEEEEecCCC-CCceEEEEEeCC------CCCeecCCcccccCCCCCCeeEEEECc
Confidence 999 99999999997 99999999976432 356899999975 699999999999999999999999999
Q ss_pred eecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcc
Q 011806 289 VRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEV 368 (477)
Q Consensus 289 v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~ 368 (477)
|+||++++|+. ++.|+......+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 211 v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~------ 268 (375)
T cd01162 211 CRVPVENRLGG----------------EGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKP------ 268 (375)
T ss_pred eEecHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc------
Confidence 99999999996 66788888888899999999999999999999999999999999998
Q ss_pred ccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCc
Q 011806 369 LLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENR 448 (477)
Q Consensus 369 ~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~ 448 (477)
|+++|.+|++|++|.+.+++++++++++++.+++. .......++++|+++++.+.++++.++|+|||.||..+++
T Consensus 269 -l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~----~~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 343 (375)
T cd01162 269 -LADFQALQFKLADMATELVASRLMVRRAASALDRG----DPDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYP 343 (375)
T ss_pred -HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCh
Confidence 99999999999999999999999999999998863 1233457788999999999999999999999999999999
Q ss_pred hHHhhhcccccccccccHHHHHHHhhcC
Q 011806 449 VGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 449 l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
++|+|||++...+++|++++++.++++.
T Consensus 344 l~r~~Rd~~~~~~~~G~~~~~~~~~~~~ 371 (375)
T cd01162 344 VEQYVRDLRVHQILEGTNEIMRLIIARA 371 (375)
T ss_pred HHHHHHHhhcceeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999864
No 14
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-60 Score=486.61 Aligned_cols=369 Identities=18% Similarity=0.173 Sum_probs=329.2
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HH
Q 011806 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
|++.+++++..+++.+++|+++. +.|....++|+.+.+|.+.|++|.+.||+++.+|+++|| ++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~ 67 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRN-------------FPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADY 67 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh-------------cCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCH
Confidence 45567888899999999999983 333223456777889999999999999999999999987 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhh-cccceEEEEEccCCCCCCCCCCCeeEEEEeC
Q 011806 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDT-ENYVVLGCFAMTELGHGSNVRGIETVTTYDA 203 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i-~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~ 203 (477)
.+.+.++|++++.|.+. +.+ +..++...+..+|+++|+++|++++ .+|+.++|+++|||++|||+..++|+|++++
T Consensus 68 ~~~~~~~e~la~~~~~~-~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~ 144 (381)
T PRK12341 68 VTQMLVLEEVSKCGAPA-FLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKN 144 (381)
T ss_pred HHHHHHHHHHhhcChhH-HHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeC
Confidence 99999999999999883 433 2234556688899999999999998 5999999999999999999999999999875
Q ss_pred CCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCC-cCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccce
Q 011806 204 NTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGK-NQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNG 282 (477)
Q Consensus 204 ~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~-~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~ 282 (477)
|+|+|| |+|+||||+.. |||++|+|++.++++ ..++++|+||.+ .|||++. .|+++|+++++++
T Consensus 145 --gg~~ln-----G~K~~is~~~~-Ad~~~v~a~~~~~~~~~~~~~~~lV~~~------~~gv~~~-~~~~~G~~~~~~~ 209 (381)
T PRK12341 145 --GKVYLN-----GQKTFITGAKE-YPYMLVLARDPQPKDPKKAFTLWWVDSS------KPGIKIN-PLHKIGWHMLSTC 209 (381)
T ss_pred --CEEEEE-----eEEEEEcCCcc-CCEEEEEEEcCCCCCCCCceEEEEEeCC------CCceeec-ccccccCCCCCce
Confidence 899999 99999999997 999999999865432 346899999976 6999994 6999999999999
Q ss_pred eEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 011806 283 RIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSIT 362 (477)
Q Consensus 283 ~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~ 362 (477)
.|.|+||+||++++|+. ++.|+...+..+..+|+.+++.++|+++++++.+++|+++|.+||+|
T Consensus 210 ~v~~~~v~Vp~~~~lg~----------------~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~ 273 (381)
T PRK12341 210 EVYLDNVEVEESDLVGE----------------EGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKP 273 (381)
T ss_pred EEEECcEEecHHHcCCC----------------CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcc
Confidence 99999999999999996 67788887888889999999999999999999999999999999998
Q ss_pred CCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011806 363 PNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQG 442 (477)
Q Consensus 363 ~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G 442 (477)
|.++|.+|++|+++.+++++++++++++++.+++. ......++++|+++++.+.++++.++|++||.|
T Consensus 274 -------i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~-----~~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g 341 (381)
T PRK12341 274 -------IGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNG-----QSLRTSAALAKLYCARTAMEVIDDAIQIMGGLG 341 (381)
T ss_pred -------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999888752 233467889999999999999999999999999
Q ss_pred ccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011806 443 LKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 443 ~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
|..+++++|+|||++...+++|++++++.++++
T Consensus 342 ~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~ 374 (381)
T PRK12341 342 YTDEARVSRFWRDVRCERIGGGTDEIMIYIAGR 374 (381)
T ss_pred cCCCCHHHHHHHHhhcceecCCHHHHHHHHHHH
Confidence 999999999999999999999999999998876
No 15
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=1.8e-60 Score=483.84 Aligned_cols=366 Identities=17% Similarity=0.190 Sum_probs=329.7
Q ss_pred cCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHH
Q 011806 52 LDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKL 128 (477)
Q Consensus 52 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~ 128 (477)
|++++..+++.+++|+++. +.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+.+
T Consensus 1 ~t~~~~~l~~~~~~~~~~~-------------~~p~~-~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~ 66 (372)
T TIGR03207 1 LNEDLQALADTARRFARER-------------IAPGF-KERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAG 66 (372)
T ss_pred CCHHHHHHHHHHHHHHHHh-------------cCcch-HHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHH
Confidence 4567788999999999983 55654 456777789999999999999999999999987 788999
Q ss_pred HHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeE
Q 011806 129 ALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEF 208 (477)
Q Consensus 129 ~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ 208 (477)
.+.|++++.|+++++....+ .+++..+..+|+++|+++||+++.+|+.++++++|||++|||+..+.|+|++++ |+|
T Consensus 67 ~~~e~la~~~~s~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~--~g~ 143 (372)
T TIGR03207 67 VIHEQIARADLSMSYVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDG--DDY 143 (372)
T ss_pred HHHHHHHhhCccHHHHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeC--CEE
Confidence 99999999999988765444 355667888999999999999999999999999999999999999999999986 899
Q ss_pred EEecCCCCceeeeecCccccccEEEEEEEeeeCC-CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEec
Q 011806 209 IINTPCESAQKYWIGGAANHATHTIVFSQLEING-KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFD 287 (477)
Q Consensus 209 ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~-~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~ 287 (477)
+|| |+|+||||+.. |||++|+|++.+++ +..++.+|+||.+ .|||++. .|+++|++++++++|.|+
T Consensus 144 ~ln-----G~k~~vs~~~~-ad~~lv~a~~~~~~~~~~~~~~~lVp~~------~~gv~~~-~~~~~G~r~~~~~~v~f~ 210 (372)
T TIGR03207 144 VLN-----GEKTSISAADQ-ADAAVVFARTGSEAEGARGISAFLVPMD------LPGITRN-RFDCHGQRAIGRGSIFFE 210 (372)
T ss_pred EEE-----EEEEEEcCCCc-CCEEEEEEEcCCCCCCCCceEEEEEcCC------CCCeecC-cchhccCCCCCeeEEEEC
Confidence 999 99999999997 99999999986432 3357899999976 6999975 699999999999999999
Q ss_pred ceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCc
Q 011806 288 NVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPE 367 (477)
Q Consensus 288 ~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~ 367 (477)
||+||++++|+. ++.||...+..+...|+.+++.++|+++++|+.+++|+++|+|||+|
T Consensus 211 ~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~----- 269 (372)
T TIGR03207 211 NVRVPADHMLGN----------------EGQGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKP----- 269 (372)
T ss_pred ceeccHHHcCCC----------------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc-----
Confidence 999999999996 66788888888999999999999999999999999999999999999
Q ss_pred cccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcC
Q 011806 368 VLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTEN 447 (477)
Q Consensus 368 ~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~ 447 (477)
|.++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|++||.||..+
T Consensus 270 --i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~-----~~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~- 341 (372)
T TIGR03207 270 --LSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHG-----LPHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG- 341 (372)
T ss_pred --hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-
Confidence 99999999999999999999999999999988752 2223567899999999999999999999999999999
Q ss_pred chHHhhhcccccccccccHHHHHHHhhcC
Q 011806 448 RVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 448 ~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+++|+|||++...+++|++++++..|+|.
T Consensus 342 ~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 342 DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999885
No 16
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=2.5e-60 Score=482.99 Aligned_cols=366 Identities=21% Similarity=0.243 Sum_probs=331.6
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHH
Q 011806 54 GHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLAL 130 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~ 130 (477)
++++++++.+++|+++ .+.|.. .++|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+.+.+
T Consensus 1 ~~~~~l~~~~~~~~~~-------------~~~~~~-~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~ 66 (372)
T cd01160 1 EEHDAFRDVVRRFFAK-------------EVAPFH-HEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVL 66 (372)
T ss_pred ChHHHHHHHHHHHHHH-------------hCchhH-HHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHH
Confidence 3567899999999998 355554 457777789999999999999999999999988 78899999
Q ss_pred HHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEE
Q 011806 131 LEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFII 210 (477)
Q Consensus 131 ~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~il 210 (477)
+|++++.+.+ ++.+.+|..++...+..+|+++|+++|++++.+|+.++|+++|||++|||+..++|+|++++ +||+|
T Consensus 67 ~e~la~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~--~g~~l 143 (372)
T cd01160 67 WEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDG--DHYVL 143 (372)
T ss_pred HHHHHHhcch-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeC--CEEEE
Confidence 9999996655 66677776566778889999999999999999999999999999999999999999999986 89999
Q ss_pred ecCCCCceeeeecCccccccEEEEEEEeeeCC-CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecce
Q 011806 211 NTPCESAQKYWIGGAANHATHTIVFSQLEING-KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNV 289 (477)
Q Consensus 211 ntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~-~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v 289 (477)
| |+|+||||+.. |||++|+|++.+++ ++.++++|+||.+ .|||++.+.|+++|++++++++|.|+||
T Consensus 144 ~-----G~k~~vs~~~~-Ad~~~v~a~~~~~~~~~~~~~~~lv~~~------~~gv~~~~~~~~~G~~~~~~~~v~~~~v 211 (372)
T cd01160 144 N-----GSKTFITNGML-ADVVIVVARTGGEARGAGGISLFLVERG------TPGFSRGRKLKKMGWKAQDTAELFFDDC 211 (372)
T ss_pred e-----eEEEEecCCCc-cCEEEEEEEeCCCCCCCCceEEEEEeCC------CCCeecCCccccccCCCCCeEEEEecce
Confidence 9 99999999997 99999999986542 3467899999965 6999999999999999999999999999
Q ss_pred ecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccc
Q 011806 290 RIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVL 369 (477)
Q Consensus 290 ~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~ 369 (477)
+||++++|+. ++.++......+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 212 ~Vp~~~~lg~----------------~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~------- 268 (372)
T cd01160 212 RVPAENLLGE----------------ENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKT------- 268 (372)
T ss_pred EccHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc-------
Confidence 9999999996 66788888888889999999999999999999999999999999988
Q ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCch
Q 011806 370 LLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRV 449 (477)
Q Consensus 370 i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l 449 (477)
|.++|.+|++|+++.+++++++++++++++.++.. ......++++|+++++.+.++++.++|+|||.||+.++++
T Consensus 269 i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~-----~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l 343 (372)
T cd01160 269 LAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQG-----RLDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPI 343 (372)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHH
Confidence 99999999999999999999999999999888752 2235678899999999999999999999999999999999
Q ss_pred HHhhhcccccccccccHHHHHHHhhcC
Q 011806 450 GHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 450 ~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+|+|||+++..+++|++++++.+|+|.
T Consensus 344 ~r~~Rd~~~~~~~~gt~~~~~~~i~~~ 370 (372)
T cd01160 344 ARAYRDARVQPIYGGTTEIMKELISRQ 370 (372)
T ss_pred HHHHHHhhcccccCCHHHHHHHHHHHh
Confidence 999999999999999999999999874
No 17
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.7e-60 Score=485.20 Aligned_cols=368 Identities=19% Similarity=0.240 Sum_probs=331.8
Q ss_pred cCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHH
Q 011806 52 LDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKL 128 (477)
Q Consensus 52 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~ 128 (477)
+++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+.+
T Consensus 1 ~~~~~~~l~~~~~~~~~~-------------~~~~~~-~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~ 66 (378)
T cd01157 1 LTEQQKEFQETARKFARE-------------EIIPVA-AEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTC 66 (378)
T ss_pred CCHHHHHHHHHHHHHHHH-------------hcccch-HHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHH
Confidence 356778999999999998 355653 457777789999999999999999999999987 789999
Q ss_pred HHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeE
Q 011806 129 ALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEF 208 (477)
Q Consensus 129 ~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ 208 (477)
.++|++++.|+++++.+..+ .++...+..+|+++|+++||+++.+|++++++++|||+.|||+..+.|+|++++ |+|
T Consensus 67 ~v~e~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~--~g~ 143 (378)
T cd01157 67 LITEELAYGCTGVQTAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKG--DEY 143 (378)
T ss_pred HHHHHHHhhhhHHHHHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcC--CEE
Confidence 99999999999987766555 355556777899999999999999999999999999999999999999999986 899
Q ss_pred EEecCCCCceeeeecCccccccEEEEEEEeeeCCC---cCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEE
Q 011806 209 IINTPCESAQKYWIGGAANHATHTIVFSQLEINGK---NQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIW 285 (477)
Q Consensus 209 ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~---~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~ 285 (477)
+|| |+|+||||+.. |||++|+|+++++++ ..++.+|+||.+ .|||++.+.|.++|+++++++++.
T Consensus 144 ~l~-----G~k~~vs~~~~-ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~------~~gv~~~~~~~~~G~~~~~s~~~~ 211 (378)
T cd01157 144 IIN-----GQKMWITNGGK-ANWYFLLARSDPDPKCPASKAFTGFIVEAD------TPGIQPGRKELNMGQRCSDTRGIT 211 (378)
T ss_pred EEe-----eEEEeecCCcc-CCEEEEEEEeCCcccCCCCCceEEEEEcCC------CCCeeccCcccccCCCCCCceEEE
Confidence 999 99999999997 999999999864321 357899999976 699999999999999999999999
Q ss_pred ecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 011806 286 FDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNG 365 (477)
Q Consensus 286 f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 365 (477)
|+||+||++++|+. ++.|+..+...+...|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 212 ~~~v~Vp~~~~lg~----------------~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~--- 272 (378)
T cd01157 212 FEDVRVPKENVLIG----------------EGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKL--- 272 (378)
T ss_pred eccEEECHHHcCCC----------------CCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCcc---
Confidence 99999999999986 67788888888889999999999999999999999999999999998
Q ss_pred CccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 011806 366 PEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKT 445 (477)
Q Consensus 366 ~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~ 445 (477)
|.++|.+|++|++|.+.+++++++++++++.++.. ......++++|+++++.+.++++.|+|++||.||+.
T Consensus 273 ----i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~-----~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 343 (378)
T cd01157 273 ----IAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSG-----RRNTYYASIAKAFAADIANQLATDAVQIFGGNGFNS 343 (378)
T ss_pred ----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 99999999999999999999999999999988752 223456788999999999999999999999999999
Q ss_pred cCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 446 ENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 446 ~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+++++|+|||++...+++|++++++..|+|+
T Consensus 344 ~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~ 374 (378)
T cd01157 344 EYPVEKLMRDAKIYQIYEGTSQIQRLIISRE 374 (378)
T ss_pred CCHHHHHHHHHhhceecCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999874
No 18
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.4e-60 Score=489.18 Aligned_cols=370 Identities=18% Similarity=0.230 Sum_probs=335.1
Q ss_pred hhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHH--HHHHHHHcCccccccccccch---HH
Q 011806 50 KLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMK--RISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 50 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
+.+++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+ .|++|.+.||+++.+|+++|| ++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~a-~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~ 89 (404)
T PLN02519 24 LLFDDTQLQFKESVQQFAQE-------------NIAPHA-AAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGY 89 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHH-------------hCCcch-HHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCH
Confidence 45667888999999999998 355643 456776777765 699999999999999999987 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCC
Q 011806 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~ 204 (477)
.+.+.++|++++.|+++++.+.+|..++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+..++|+|++++
T Consensus 90 ~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~- 168 (404)
T PLN02519 90 LYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVD- 168 (404)
T ss_pred HHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeC-
Confidence 8999999999999999999888886666677899999999999999999999999999999999999999999999986
Q ss_pred CCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeE
Q 011806 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRI 284 (477)
Q Consensus 205 ~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i 284 (477)
|||+|| |+|+||+|+.. |||++|+|++++++++.++++|+||.+ .|||++.+.|+++|++++++++|
T Consensus 169 -~g~~ln-----G~K~~vs~a~~-ad~~~v~a~~~~~~~~~~~~~~lVp~~------~~Gv~~~~~~~~~G~rgt~s~~v 235 (404)
T PLN02519 169 -GGYVLN-----GNKMWCTNGPV-AQTLVVYAKTDVAAGSKGITAFIIEKG------MPGFSTAQKLDKLGMRGSDTCEL 235 (404)
T ss_pred -CEEEEE-----eEEEeecCCCc-CCEEEEEEEeCCCCCCCeeEEEEEeCC------CCCeeccCcccccCCCCCCeeEE
Confidence 899999 99999999997 999999999865444567899999965 69999999999999999999999
Q ss_pred EecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 011806 285 WFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPN 364 (477)
Q Consensus 285 ~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 364 (477)
.|+||+||++++|+. ++.|+......+...|+.+++.++|+++++++.+++|+++|.+||+|
T Consensus 236 ~f~~v~Vp~~~~lg~----------------~~~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~p-- 297 (404)
T PLN02519 236 VFENCFVPEENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRP-- 297 (404)
T ss_pred EeCeEEecHHHcCCC----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCcc--
Confidence 999999999999996 55677777778889999999999999999999999999999999998
Q ss_pred CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011806 365 GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLK 444 (477)
Q Consensus 365 ~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~ 444 (477)
|.++|.+|++|++|.+.+++++++++++++.++.. ......++.+|+++++.+.+++..++|++||.||+
T Consensus 298 -----l~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~-----~~~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~ 367 (404)
T PLN02519 298 -----IGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNG-----KVDRKDCAGVILCAAERATQVALQAIQCLGGNGYI 367 (404)
T ss_pred -----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceec
Confidence 99999999999999999999999999999988752 22345677899999999999999999999999999
Q ss_pred CcCchHHhhhcccccccccccHHHHHHHhhc
Q 011806 445 TENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 445 ~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
++++++|+|||+++..+++|++++++..|++
T Consensus 368 ~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~ 398 (404)
T PLN02519 368 NEYPTGRLLRDAKLYEIGAGTSEIRRMLIGR 398 (404)
T ss_pred CCChHHHHHHhhhcceeeCCHHHHHHHHHHH
Confidence 9999999999999999999999999998876
No 19
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=9.6e-61 Score=485.54 Aligned_cols=367 Identities=15% Similarity=0.168 Sum_probs=321.9
Q ss_pred hcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccC-CHHHHHHHHHHHHHHHHHcCccccccccccch---HHHH
Q 011806 51 LLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQ-TMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELR 126 (477)
Q Consensus 51 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~ 126 (477)
.+++|+.++++.+++|++++ +.|.... ..|+.+.+|.+.|++|.+.||+++.+|+++|| ++.+
T Consensus 3 ~~~~eq~~l~~~~~~~~~~~-------------~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~ 69 (378)
T TIGR03203 3 DLSEEQRLLKESVEGLLKTS-------------YDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVE 69 (378)
T ss_pred CCCHHHHHHHHHHHHHHHhh-------------CCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHH
Confidence 36778889999999999984 3332111 13455668999999999999999999999987 7889
Q ss_pred HHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCC
Q 011806 127 KLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTG 206 (477)
Q Consensus 127 ~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~ 206 (477)
.+.++|++++.+.+.+. +.. ..++...+..+|+++||++|||++.+|+.++++++|||++|||+..+.|+|++++ |
T Consensus 70 ~~~v~eel~~~~~~~~~-~~~-~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g--~ 145 (378)
T TIGR03203 70 TMIVMEALGKALVLEPY-LAT-VVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTG--D 145 (378)
T ss_pred HHHHHHHHhCcccchHH-HHH-HHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcC--C
Confidence 99999999998765443 222 1245567889999999999999999999999999999999999999999999986 8
Q ss_pred eEEEecCCCCceeeeecCccccccEEEEEEEeeeCC-CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEE
Q 011806 207 EFIINTPCESAQKYWIGGAANHATHTIVFSQLEING-KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIW 285 (477)
Q Consensus 207 ~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~-~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~ 285 (477)
+|+|| |+|.||+++.. ||+++|+|+++++. +.+|+++|+||.+ .|||++.+.+.++|+ .+++|.
T Consensus 146 ~~~l~-----G~K~~vt~a~~-Ad~~lv~ar~~~~~~~~~g~~~flV~~~------~~Gv~~~~~~~~~g~---~~~~l~ 210 (378)
T TIGR03203 146 GWVID-----GEKFVVLNGET-ADTLIVTARTKGARRDRTGIGVFLVPAG------AKGVTIKGYPTQDGL---HAADIT 210 (378)
T ss_pred EEEEE-----eEEEEecCCcc-CCEEEEEEecCCCCCCCCceEEEEEECC------CCCceeccccccCCC---ceeeEE
Confidence 99999 99999999997 99999999986432 3467999999976 699999776666665 468999
Q ss_pred ecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 011806 286 FDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNG 365 (477)
Q Consensus 286 f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~ 365 (477)
|+||+||++++|+. ++.||..++..+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 211 fd~v~vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~p--- 271 (378)
T TIGR03203 211 FTGVVVGADAAIGD----------------PENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVP--- 271 (378)
T ss_pred ECCCcccHHhhcCC----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCcc---
Confidence 99999999999996 67899999999999999999999999999999999999999999999
Q ss_pred CccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 011806 366 PEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKT 445 (477)
Q Consensus 366 ~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~ 445 (477)
|++||.+|++|++|.+.+++++++++++++..+.. ..++....++++|+++++.+.++++.|+|+|||+||++
T Consensus 272 ----i~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~---~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~ 344 (378)
T TIGR03203 272 ----IGSFQVLQHRAADMFVAVEQARSMAMFATMASDFD---DAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTM 344 (378)
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecc
Confidence 99999999999999999999999999999877642 12334568899999999999999999999999999999
Q ss_pred cCchHHhhhcccccccccccHHHHHHHhhc
Q 011806 446 ENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 446 ~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
+++++++|||++...+++|++++++..+++
T Consensus 345 e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 345 EAKIGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999999999875
No 20
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=4.3e-60 Score=481.98 Aligned_cols=369 Identities=18% Similarity=0.246 Sum_probs=335.6
Q ss_pred cCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHH
Q 011806 52 LDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKL 128 (477)
Q Consensus 52 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~ 128 (477)
++++++++++.+++|++++ +.|.. .+.|+.+.+|.+.|+.|.+.||+++.+|+++|| ++.+.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~-------------~~~~a-~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~ 67 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKE-------------IAPLA-AKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHV 67 (376)
T ss_pred CCHHHHHHHHHHHHHHHHh-------------cCcch-HHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHH
Confidence 4567789999999999983 55543 456777779999999999999999999999987 788899
Q ss_pred HHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeE
Q 011806 129 ALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEF 208 (477)
Q Consensus 129 ~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ 208 (477)
.++|+|++.|+++++.+..|..++...|..+|+++|+++|++++.+|++++++++|||++|||+..++|+|++++ |||
T Consensus 68 ~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~--~g~ 145 (376)
T cd01156 68 IIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKG--DRY 145 (376)
T ss_pred HHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeC--CEE
Confidence 999999999999998877776566677899999999999999999999999999999999999999999999986 899
Q ss_pred EEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecc
Q 011806 209 IINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDN 288 (477)
Q Consensus 209 ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~ 288 (477)
+|| |+|+||+|+.. |||++|+|++.++++..++.+|+||.+ .|||++.+.|+++|++++++++|.|+|
T Consensus 146 ~l~-----G~k~~vs~~~~-a~~~lv~a~~~~~~~~~~~~~~lv~~~------~~gv~~~~~~~~~G~~~~~~~~v~~~~ 213 (376)
T cd01156 146 VLN-----GSKMWITNGPD-ADTLVVYAKTDPSAGAHGITAFIVEKG------MPGFSRAQKLDKLGMRGSNTCELVFED 213 (376)
T ss_pred EEE-----EEEEEecCCCc-CCEEEEEEEeCCCCCCCceEEEEEcCC------CCCeecCCccccccCCCCCceEEEeCc
Confidence 999 99999999997 999999999865544567899999976 699999999999999999999999999
Q ss_pred eecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcc
Q 011806 289 VRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEV 368 (477)
Q Consensus 289 v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~ 368 (477)
|+||++++|+. ++.|+...+..+..+|+.+++.++|+++++++.+++|+++|++||+|
T Consensus 214 v~Vp~~~~lg~----------------~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~------ 271 (376)
T cd01156 214 CEVPEENILGG----------------ENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQP------ 271 (376)
T ss_pred eEecHHHcCCC----------------CCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcc------
Confidence 99999999996 56788888888999999999999999999999999999999999998
Q ss_pred ccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCc
Q 011806 369 LLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENR 448 (477)
Q Consensus 369 ~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~ 448 (477)
|.++|.+|++|++|.+++++++++++++++.++.. ......++.+|+++++.+.++++.++|++||.||+.+++
T Consensus 272 -i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~-----~~~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~ 345 (376)
T cd01156 272 -IGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRG-----NMDPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYP 345 (376)
T ss_pred -hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCH
Confidence 99999999999999999999999999999988753 123346778999999999999999999999999999999
Q ss_pred hHHhhhcccccccccccHHHHHHHhhcC
Q 011806 449 VGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 449 l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
++|+|||++...+++|++++++..|++.
T Consensus 346 l~r~~Rda~~~~~~~gt~~~~~~~i~~~ 373 (376)
T cd01156 346 TGRLLRDAKLYEIGAGTSEIRRMVIGRE 373 (376)
T ss_pred HHHHHHHhhcceecCCHHHHHHHHHHHH
Confidence 9999999999999999999999998863
No 21
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-60 Score=484.83 Aligned_cols=368 Identities=17% Similarity=0.230 Sum_probs=332.1
Q ss_pred Hh-hhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---H
Q 011806 48 MR-KLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---A 123 (477)
Q Consensus 48 m~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~ 123 (477)
|+ +.+++++.++++.+++|+++ .+.|.. .+.|+.+.+|.+.|+.|.+.||+++.+|+++|| +
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~a-~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~ 97 (410)
T PTZ00461 32 MDLYNPTPEHAALRETVAKFSRE-------------VVDKHA-REDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMD 97 (410)
T ss_pred cccCCCCHHHHHHHHHHHHHHHH-------------hCCccH-HHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCC
Confidence 54 34667788999999999988 355654 456777789999999999999999999999988 7
Q ss_pred HHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeC
Q 011806 124 ELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDA 203 (477)
Q Consensus 124 ~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~ 203 (477)
+.+.+.+.|++++.|+++++.+.+|..++...+..+|+++|+++|++++.+|++++|+++|||++|||+..+.|+|++++
T Consensus 98 ~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~ 177 (410)
T PTZ00461 98 AVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS 177 (410)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcC
Confidence 88999999999999998887777775556667888999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccccee
Q 011806 204 NTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGR 283 (477)
Q Consensus 204 ~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~ 283 (477)
+|+|+|| |+|+||||+.. |||++|+|+++ .++++|+||.+ .|||++.+.|+++|++++++++
T Consensus 178 -~gg~~L~-----G~K~~vs~a~~-Ad~~lv~a~~~-----~~~~~flVp~~------~~Gv~v~~~~~~~G~r~~~~~~ 239 (410)
T PTZ00461 178 -NGNYVLN-----GSKIWITNGTV-ADVFLIYAKVD-----GKITAFVVERG------TKGFTQGPKIDKCGMRASHMCQ 239 (410)
T ss_pred -CCeEEEE-----eEEEeECCCcc-CCEEEEEEEeC-----CceEEEEEeCC------CCCeecCCCCcccCCCCCceEE
Confidence 3689999 99999999997 99999999963 24789999976 6999999999999999999999
Q ss_pred EEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 011806 284 IWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITP 363 (477)
Q Consensus 284 i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~ 363 (477)
|.|+||+||++++|+. ++.|+......+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 240 l~f~~v~Vp~~~~lg~----------------~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~- 302 (410)
T PTZ00461 240 LFFEDVVVPAENLLGE----------------EGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKP- 302 (410)
T ss_pred EEEcceecCHHHhCCC----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcC-
Confidence 9999999999999996 56777777788889999999999999999999999999999999998
Q ss_pred CCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011806 364 NGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGL 443 (477)
Q Consensus 364 ~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~ 443 (477)
|+++|.+|++|+++.+.+++++++++++++.++.. ......++++|+++++.+.++++.++|++||.||
T Consensus 303 ------i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~-----~~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~ 371 (410)
T PTZ00461 303 ------ISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPG-----NKNRLGSDAAKLFATPIAKKVADSAIQVMGGMGY 371 (410)
T ss_pred ------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999887642 2234567889999999999999999999999999
Q ss_pred cCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011806 444 KTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 444 ~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
..+++++|+|||++...+++|++++++..|++
T Consensus 372 ~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~ 403 (410)
T PTZ00461 372 SRDMPVERLWRDAKLLEIGGGTIEAHHKNITK 403 (410)
T ss_pred CCCCHHHHHHHHHhhheeccCHHHHHHHHHHH
Confidence 99999999999999999999999999999886
No 22
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.8e-59 Score=481.77 Aligned_cols=368 Identities=23% Similarity=0.269 Sum_probs=329.6
Q ss_pred HhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HH
Q 011806 48 MRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AE 124 (477)
Q Consensus 48 m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~ 124 (477)
|+..++++++++++.+++|++++ +.|.. ...++...+|.+.|++|.+.||+++.+ +++|| ++
T Consensus 25 ~~~~~t~~~~~l~~~~~~f~~~~-------------~~~~~-~~~~~~~~~p~~~~~~l~~~G~~~~~v-~~~GG~G~~~ 89 (412)
T PLN02526 25 FDDLLTPEEQALRKRVRECMEKE-------------VAPIM-TEYWEKAEFPFHIIPKLGSLGIAGGTI-KGYGCPGLSI 89 (412)
T ss_pred cccCCCHHHHHHHHHHHHHHHHh-------------cccch-HHHHHhCCCCHHHHHHHHHCCCCcCcc-cccCCCCcCH
Confidence 66668888899999999999984 45543 334455678999999999999999999 78876 78
Q ss_pred HHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCC
Q 011806 125 LRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDAN 204 (477)
Q Consensus 125 ~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~ 204 (477)
.+.+.++|++++.|++++..+.+|..++...|..+|+++|+++|++++.+|++++|+++|||++|||+.++.|+|++++
T Consensus 90 ~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~- 168 (412)
T PLN02526 90 TASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVE- 168 (412)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEEC-
Confidence 8999999999999999877777776566667999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeE
Q 011806 205 TGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRI 284 (477)
Q Consensus 205 ~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i 284 (477)
|||+|| |+|+||+|+.. |||++|+++++.+ .++++|+||.+ .|||++.+.|+++|++++++++|
T Consensus 169 -gg~~ln-----G~K~~vs~~~~-Ad~~lv~a~~~~~---~~~~~flV~~~------~~Gv~~~~~~~~~G~r~t~s~~v 232 (412)
T PLN02526 169 -GGWILN-----GQKRWIGNSTF-ADVLVIFARNTTT---NQINGFIVKKG------APGLKATKIENKIGLRMVQNGDI 232 (412)
T ss_pred -CEEEEE-----EEEeeecCCCc-cCEEEEEEEeCCC---CCeEEEEEcCC------CCCeEcCCCCCccCcCCCCeeEE
Confidence 899999 99999999997 9999999997532 35889999975 69999999999999999999999
Q ss_pred EecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 011806 285 WFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPN 364 (477)
Q Consensus 285 ~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 364 (477)
.|+||+||++++|+. . .++......+..+|+.+++.++|+++++++.+++|+++|+|||+|
T Consensus 233 ~f~~v~Vp~~~~l~~----------------~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~-- 293 (412)
T PLN02526 233 VLKDVFVPDEDRLPG----------------V-NSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP-- 293 (412)
T ss_pred EEeeEEECHHHhCCC----------------c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCc--
Confidence 999999999999974 2 255566677889999999999999999999999999999999998
Q ss_pred CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011806 365 GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLK 444 (477)
Q Consensus 365 ~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~ 444 (477)
|+++|.+|++|++|.+++++++++++++++.++.. ......++++|+++++.+.++++.|+|+|||.||+
T Consensus 294 -----i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~-----~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~ 363 (412)
T PLN02526 294 -----LAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESG-----KMTPGHASLGKAWITKKARETVALGRELLGGNGIL 363 (412)
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999988752 12345678999999999999999999999999999
Q ss_pred CcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 445 TENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 445 ~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.+++++|+|||+++..+++|+++++++.|+|.
T Consensus 364 ~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~ 395 (412)
T PLN02526 364 ADFLVAKAFCDLEPIYTYEGTYDINALVTGRE 395 (412)
T ss_pred CcCHHHHHHhcccceEecCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998863
No 23
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-60 Score=478.88 Aligned_cols=414 Identities=33% Similarity=0.525 Sum_probs=356.1
Q ss_pred cCCCCCHHHHhhhcCCCcH--HHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHH----HHHHHHHHHcCcc
Q 011806 39 EVYDFDLKEMRKLLDGHNL--QERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMT----MKRISYLLERNVF 112 (477)
Q Consensus 39 ~~~~~~~~~m~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~l~~~Gl~ 112 (477)
..++||+++|..++.+.+. ..+.++.+.+.++|.|...+ |....+.++...-. ....+.+.+....
T Consensus 18 ~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~--------~~~~~sr~E~~~~~~Rk~~~~~~~~~el~~~ 89 (670)
T KOG0136|consen 18 AKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKK--------PLPFMSREERYENTVRKLARLTKKMRELQDN 89 (670)
T ss_pred hhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccC--------cccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999665 56889999999999997542 32234444432222 2334444454444
Q ss_pred ccccccccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCC
Q 011806 113 EGWLTAKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNV 192 (477)
Q Consensus 113 ~~~~p~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~ 192 (477)
.-..++ ..-........-+..+.+|+.+|..+|..-||+||.++||++....+++||+|.||.|||+++
T Consensus 90 ~d~~~~-----------~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl 158 (670)
T KOG0136|consen 90 TDNENK-----------LLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNL 158 (670)
T ss_pred Ccchhh-----------hhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccc
Confidence 211111 111223344445566788999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCC-CCCCCCCeEEccCC
Q 011806 193 RGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDA-AGNICPNIRIADCG 271 (477)
Q Consensus 193 ~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~-~~~~~pGv~i~~~~ 271 (477)
++++|+|++|+.+++|+|||||.++.|||.+|.++.|+|++|.|++..+|+..|++.|+||+||. +|.|+|||+|+|++
T Consensus 159 ~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG 238 (670)
T KOG0136|consen 159 RGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIG 238 (670)
T ss_pred cccceeeeecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCC
Confidence 99999999999999999999999999999999998899999999999999999999999999995 89999999999999
Q ss_pred CccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011806 272 HKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIR 351 (477)
Q Consensus 272 ~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ 351 (477)
.|||.+|++||.+.|+|||||++|+|.++++|.+||.|..|..+ .-+ +..+...|..++....-....|..+|++
T Consensus 239 ~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~-~l~----Y~tMv~vRs~mv~d~a~~La~A~tIAtR 313 (670)
T KOG0136|consen 239 PKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHP-KLG----YGTMVYVRSLMVMDQARFLAKAATIATR 313 (670)
T ss_pred ccccccCCccceeeecceeechHhhhhhhheecCCCccccCCcc-ccc----eeeeEEEeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877543 333 4455567888888888888999999999
Q ss_pred HHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCchhhHHHHHHHHHHHH
Q 011806 352 YSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRT-------PQSNKTIHVVSSAFKAILT 424 (477)
Q Consensus 352 ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~K~~a~ 424 (477)
|+..|+|+.-.|+++|.+|+|||++|.||.+.++..+|.++....+.+.+.... -+.-++.|+.++.+|+.++
T Consensus 314 YSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T 393 (670)
T KOG0136|consen 314 YSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVT 393 (670)
T ss_pred HHHHhhccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhh
Confidence 999999999889999999999999999999999999999999998888876432 1223789999999999999
Q ss_pred HHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 425 WHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 425 ~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
|.+.+.+++|+..|||+||+..+.+..+|-.+-..+||||+|.||+.|+||+
T Consensus 394 ~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARf 445 (670)
T KOG0136|consen 394 WDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARF 445 (670)
T ss_pred hhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHH
Confidence 9999999999999999999999999999999999999999999999999985
No 24
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-58 Score=495.92 Aligned_cols=366 Identities=17% Similarity=0.205 Sum_probs=317.8
Q ss_pred cCCCcHHHHHH-HHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHH
Q 011806 52 LDGHNLQERDW-LFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRK 127 (477)
Q Consensus 52 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~ 127 (477)
|++|++++++. +++|++.- +.+ ...++.+.+|.++|+.|++.||+++.+|++||| +..+.
T Consensus 79 Ls~ee~~~~d~~v~~l~~~~---------------~~~-~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~ 142 (777)
T PRK09463 79 LTAEEQAFLDGPVEELCRMV---------------NDW-QITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAH 142 (777)
T ss_pred CCHHHHHHHHHHHHHHHHHH---------------HHH-HHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHH
Confidence 56677788775 66666531 111 111223689999999999999999999999987 67888
Q ss_pred HHHHHHHhcccccchhhHhhhhhhHH-HHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEE-----E
Q 011806 128 LALLEVTGIFDHSLAIKIGVHFFLWG-GAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTT-----Y 201 (477)
Q Consensus 128 ~~~~e~la~~~~s~~~~~~~h~~l~~-~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~-----~ 201 (477)
+.++|++++.|++++..+.+|++++. ..|..+|+++||++|||++++|+.++||++|||++|||+.++.|+++ +
T Consensus 143 a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~ 222 (777)
T PRK09463 143 SRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEW 222 (777)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeee
Confidence 99999999999988877777766654 46889999999999999999999999999999999999999886553 3
Q ss_pred eCCCC---eEEEecCCCCceeeeecCccccccEEEEEEEeee-C-----CCcCceEEEEEEeeCCCCCCCCCeEEccCCC
Q 011806 202 DANTG---EFIINTPCESAQKYWIGGAANHATHTIVFSQLEI-N-----GKNQGVHAFICQIRDAAGNICPNIRIADCGH 272 (477)
Q Consensus 202 ~~~~~---~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~-~-----~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~ 272 (477)
++ + +|+|| |+|+||||++. ||+++|++++.+ + +++.|+++|+||.+ .|||++.+.+.
T Consensus 223 dG--d~~~g~vLN-----G~K~~IT~a~~-Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d------~pGV~ig~~~~ 288 (777)
T PRK09463 223 QG--EEVLGMRLT-----WNKRYITLAPI-ATVLGLAFKLYDPDGLLGDKEDLGITCALIPTD------TPGVEIGRRHF 288 (777)
T ss_pred cC--CcccceEEE-----EEEEeeCCCCc-cCEEEEEEEecCcccccCCCCCCceEEEEEECC------CCCeEeccccc
Confidence 33 3 69999 99999999997 999999998632 2 23568999999975 79999999999
Q ss_pred ccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 011806 273 KIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGR-VIIAGSSVYKAKIGLAIAIR 351 (477)
Q Consensus 273 ~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~ 351 (477)
++|++ ..++.+.|+||+||.+++||... ..+.||..++..+..+| +.+++.++|+++++++.+++
T Consensus 289 ~lG~r-~~~g~v~fddV~VP~d~lLG~~~-------------~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~ 354 (777)
T PRK09463 289 PLNVP-FQNGPTRGKDVFIPLDYIIGGPK-------------MAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGA 354 (777)
T ss_pred ccCcc-cccceEEeeeeecCHHHhccccc-------------ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 67999999999999999999510 13789999999999999 99999999999999999999
Q ss_pred HHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 011806 352 YSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTL 431 (477)
Q Consensus 352 ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~ 431 (477)
|+++|+|||+| |+++|.+|++|++|.+.+++++++.+.+++.++.. ......++++|+++++.+.+++
T Consensus 355 YA~~R~QFG~p-------Ig~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G-----~~~~~~aA~AK~~atE~a~~va 422 (777)
T PRK09463 355 YARIRRQFKLP-------IGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLG-----EKPSVLSAIAKYHLTERGRQVI 422 (777)
T ss_pred HHHHHHHcCCC-------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999888888752 2335678999999999999999
Q ss_pred HHHHHHhccccccCc--CchHHhhhcccccccccccHHHHHHHh
Q 011806 432 QECREACGGQGLKTE--NRVGHLKGEFDVQLTFEGDNNVLMQQV 473 (477)
Q Consensus 432 ~~~~~~~Gg~G~~~~--~~l~r~~rda~~~~~~~G~~~vl~~~v 473 (477)
++|+|+|||.||..+ ++++|+|||+++..|+||+|++++..+
T Consensus 423 ~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 423 NDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 999999999999997 999999999999999999999999875
No 25
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=5.1e-58 Score=466.34 Aligned_cols=366 Identities=22% Similarity=0.328 Sum_probs=334.5
Q ss_pred CcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHH
Q 011806 55 HNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALL 131 (477)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~ 131 (477)
++.++++.+++|+++ ++.|.. .+.|+.+.+|.+.|+.|.+.||+++.+|+++|| ++.+.+.++
T Consensus 2 ~~~~~~~~~~~~~~~-------------~~~~~a-~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~ 67 (373)
T cd01158 2 EHQMIRKTVRDFAEK-------------EIAPLA-AEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAI 67 (373)
T ss_pred hHHHHHHHHHHHHHH-------------hcccch-HHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHH
Confidence 567899999999987 345543 456777789999999999999999999999887 788999999
Q ss_pred HHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEe
Q 011806 132 EVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIIN 211 (477)
Q Consensus 132 e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~iln 211 (477)
|++++.|+++++...+|..++...+..+|+++|+++|++++.+|+.++++++|||++||++..+++++++++ +||+||
T Consensus 68 ~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~--~g~~l~ 145 (373)
T cd01158 68 EELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDG--DDYVLN 145 (373)
T ss_pred HHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeC--CEEEEe
Confidence 999999999999998887667778899999999999999999999999999999999999999999999985 899999
Q ss_pred cCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceec
Q 011806 212 TPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRI 291 (477)
Q Consensus 212 tp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~V 291 (477)
|+|+|++|+.+ |||++|+|+...+.+..++.+|+||.+ .|||++.+.|+++|+++++++.|.|+||+|
T Consensus 146 -----G~k~~vsg~~~-ad~~lv~a~~~~~~~~~~~~~~lvp~~------~~gv~i~~~~~~~G~~g~~s~~v~~~~v~V 213 (373)
T cd01158 146 -----GSKMWITNGGE-ADFYIVFAVTDPSKGYRGITAFIVERD------TPGLSVGKKEDKLGIRGSSTTELIFEDVRV 213 (373)
T ss_pred -----eEEEEEcCCCc-CCEEEEEEEcCCCCCCCceEEEEEcCC------CCCeecCCcccccccCCCCceEEEeCcEEe
Confidence 99999999997 999999999765444567899999976 699999999999999999999999999999
Q ss_pred CcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccc
Q 011806 292 PRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLL 371 (477)
Q Consensus 292 P~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~ 371 (477)
|++++|+. ++.++......+..+|+.+++.++|+++++++.+++|+++|.+||.+ +.
T Consensus 214 p~~~~lg~----------------~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~-------~~ 270 (373)
T cd01158 214 PKENILGE----------------EGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKP-------IA 270 (373)
T ss_pred cHHHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCc-------HH
Confidence 99999996 56788888888889999999999999999999999999999999988 99
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHH
Q 011806 372 DYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGH 451 (477)
Q Consensus 372 ~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r 451 (477)
++|.+|++|+++.+.+++++++++++++.++.. ......++.+|+++++.+.++++.+++++||.||.++++++|
T Consensus 271 ~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~-----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~r 345 (373)
T cd01158 271 DFQGIQFKLADMATEIEAARLLTYKAARLKDNG-----EPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVER 345 (373)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChHHH
Confidence 999999999999999999999999999988752 234567889999999999999999999999999999999999
Q ss_pred hhhcccccccccccHHHHHHHhhcC
Q 011806 452 LKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 452 ~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+|||+++..+++|++++++.++++.
T Consensus 346 ~~rd~~~~~~~~g~~~~~~~~i~~~ 370 (373)
T cd01158 346 YYRDAKITEIYEGTSEIQRLVIAKH 370 (373)
T ss_pred HHHHhhhccccCCHHHHHHHHHHHH
Confidence 9999999999999999999999863
No 26
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-58 Score=423.88 Aligned_cols=375 Identities=21% Similarity=0.271 Sum_probs=344.2
Q ss_pred CCHHHHhhhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccc-
Q 011806 43 FDLKEMRKLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGA- 121 (477)
Q Consensus 43 ~~~~~m~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~G- 121 (477)
=|+..+...|++|+..+|+.+|+++++ ++.|+.. +.-+...|+.+++.+|.++|++|..+ +.||
T Consensus 46 qD~~~l~dqLT~dE~air~~~Reycq~-------------~l~Prvt-ea~r~e~F~~~i~pemGsmGvlG~ti-kGYGC 110 (432)
T KOG0138|consen 46 QDPLVLEDQLTEDEIAIRDTFREYCQE-------------RLMPRVT-EANRNEVFDREIIPEMGSMGVLGPTI-KGYGC 110 (432)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHHHHH-------------HhhhHHH-HHhhhccCChhhhhhhhccccccCcc-cCcCC
Confidence 388899999999999999999999999 5778763 44556789999999999999999766 3444
Q ss_pred -h-HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEE
Q 011806 122 -E-AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVT 199 (477)
Q Consensus 122 -g-~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A 199 (477)
| +...+..+..|+.|.|.+....+.+|.+++..+|..+|+++||++|||.+++|+.++||++|||.||||..+++|+|
T Consensus 111 aG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~A 190 (432)
T KOG0138|consen 111 AGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRA 190 (432)
T ss_pred CchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCccccccee
Confidence 3 77788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcc
Q 011806 200 TYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGV 279 (477)
Q Consensus 200 ~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~ 279 (477)
++++.+..|.|| |+|.||+|++. ||+++|+||...+++ +.-|+|++. ++|++...+..|+++|.+
T Consensus 191 t~~e~~ktyklN-----GsKtWI~nsp~-aDl~vvwAr~~t~n~---I~GFi~~k~------~~GL~apkI~gK~sLRas 255 (432)
T KOG0138|consen 191 TYDESNKTYKLN-----GSKTWITNSPM-ADLFVVWARCETDNK---IRGFILEKG------MRGLSAPKIEGKFSLRAS 255 (432)
T ss_pred EEccCCceEEEC-----CeeeeecCCcc-cceEEEEEecccCCc---eeeEEEecC------CCCCcCCCcCCeeeeeec
Confidence 999977789999 99999999998 999999999875443 777999965 899999899999999999
Q ss_pred cceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011806 280 DNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF 359 (477)
Q Consensus 280 ~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf 359 (477)
.++.|-+|||+||++++|... .+|.-.+..++..|+++|...+|+++.+++.+.+|...|+||
T Consensus 256 ~tG~Ilmd~V~VPeE~~LPg~-----------------~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQF 318 (432)
T KOG0138|consen 256 ATGMILMDGVEVPEENLLPGA-----------------SSLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQF 318 (432)
T ss_pred ccCceeecCCcCChhhcCCCc-----------------cccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999852 344445778899999999999999999999999999999999
Q ss_pred CCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011806 360 SITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACG 439 (477)
Q Consensus 360 g~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~G 439 (477)
|.| ++.+|.+|.+|++|+.++..+-.+++++.++.|. ++......+..|.+.+--+.+++..+++++|
T Consensus 319 G~P-------LAanQL~Q~Kladmltei~lgl~~clrl~rLkd~-----g~~tp~qiSl~Krn~~gKaleiAr~~RdmLG 386 (432)
T KOG0138|consen 319 GRP-------LAANQLIQKKLADMLTEITLGLQACLRLGRLKDQ-----GKATPEQISLLKRNNCGKALEIARQARDMLG 386 (432)
T ss_pred CCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-----ccCChhhhHHHhhccchhHHHHHHHHHHHhc
Confidence 999 9999999999999999999999999999999986 5777788999999999999999999999999
Q ss_pred cccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 440 GQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 440 g~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
|.|+.+++.+-|++-|....-+|||+-+++...++|.
T Consensus 387 gNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRa 423 (432)
T KOG0138|consen 387 GNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRA 423 (432)
T ss_pred CCcchhHHHHHHHHcCccceecccccchHHHHhhhhh
Confidence 9999999999999999999999999999999888874
No 27
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=6.5e-57 Score=460.97 Aligned_cols=368 Identities=18% Similarity=0.216 Sum_probs=318.0
Q ss_pred cHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHH-----------HHHHHHHHHHHHHcCccccccccccch--
Q 011806 56 NLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQ-----------REMTMKRISYLLERNVFEGWLTAKGAE-- 122 (477)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----------~~~~~~~~~~l~~~Gl~~~~~p~~~Gg-- 122 (477)
.+++++.+++|++++ +.|.. .++++. .+++.++|+.++++||+++.+|+++||
T Consensus 3 ~~~~~~~~r~~~~~~-------------~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g 68 (394)
T cd01155 3 AQELRARVKAFMEEH-------------VYPAE-QEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSG 68 (394)
T ss_pred HHHHHHHHHHHHHHh-------------cCccH-HHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCC
Confidence 468899999999984 55543 344432 235568999999999999999999987
Q ss_pred -HHHHHHHHHHHHhcccc-cchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCC-CCCCCCCCeeEE
Q 011806 123 -AELRKLALLEVTGIFDH-SLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELG-HGSNVRGIETVT 199 (477)
Q Consensus 123 -~~~~~~~~~e~la~~~~-s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~-~Gsd~~~~~t~A 199 (477)
++.+.+.++|++++++. +.++....+.......+..+|+++|+++|++++.+|++++|+++|||+ .|||+..+.|+|
T Consensus 69 ~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a 148 (394)
T cd01155 69 LTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSI 148 (394)
T ss_pred cCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEE
Confidence 78999999999999863 333322222112345688999999999999999999999999999997 579999999999
Q ss_pred EEeCCCCeEEEecCCCCceeeeecCccc-cccEEEEEEEeeeCC--CcCceEEEEEEeeCCCCCCCCCeEEccCCCcccc
Q 011806 200 TYDANTGEFIINTPCESAQKYWIGGAAN-HATHTIVFSQLEING--KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGL 276 (477)
Q Consensus 200 ~~~~~~~~~ilntp~~~G~K~~is~a~~-~A~~~~v~A~~~~~~--~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl 276 (477)
++++ |||+|| |+|+||||+.+ .++|++|+|++.+++ +..++.+|+||.+ .|||++.+.|+++|+
T Consensus 149 ~~~~--~g~~Ln-----G~k~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~------~~Gv~i~~~~~~~G~ 215 (394)
T cd01155 149 ERDG--DDYVIN-----GRKWWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMD------TPGVTIIRPLSVFGY 215 (394)
T ss_pred EEEC--CEEEEE-----EEEEEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCC------CCCeEeeccccccCC
Confidence 9986 899999 99999999952 278999999986442 2347899999975 699999999999999
Q ss_pred Cc--ccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011806 277 NG--VDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSL 354 (477)
Q Consensus 277 ~g--~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~ 354 (477)
++ +++++|.|+||+||++++|+. +++|+......+..+|+..++.++|+++++++.+++|++
T Consensus 216 r~~~t~s~~v~f~dv~Vp~~~~lg~----------------~~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~ 279 (394)
T cd01155 216 DDAPHGHAEITFDNVRVPASNLILG----------------EGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAV 279 (394)
T ss_pred CCCCCCeeEEEEccEEecHHHcCCC----------------CChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 97 678999999999999999986 677888888888999999999999999999999999999
Q ss_pred hccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011806 355 SRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQEC 434 (477)
Q Consensus 355 ~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~ 434 (477)
+|+|||+| |.++|.+|++|++|.+.+++++++++++++.++... .......++++|+++++.+.++++.|
T Consensus 280 ~R~~fg~~-------i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~---~~~~~~~~~~aK~~~~~~a~~~~~~a 349 (394)
T cd01155 280 SREAFGKK-------LAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVG---NKAARKEIAMIKVAAPRMALKIIDRA 349 (394)
T ss_pred cCccCCCc-------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999999999999999887521 12345678999999999999999999
Q ss_pred HHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 435 REACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 435 ~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
+|++||.||+.+++++|+|||++...+++|++++++..|++.
T Consensus 350 ~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~ 391 (394)
T cd01155 350 IQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARM 391 (394)
T ss_pred HHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999864
No 28
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=9.8e-57 Score=479.56 Aligned_cols=338 Identities=18% Similarity=0.231 Sum_probs=298.5
Q ss_pred HHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHHHHhcccccchhhHhhhhhhH-HHHHhccCCHHHHHHh
Q 011806 93 EQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALLEVTGIFDHSLAIKIGVHFFLW-GGAIQFFGTQRHHEKW 168 (477)
Q Consensus 93 ~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~-~~~i~~~gt~~q~~~~ 168 (477)
++.+.+|.++|+.|++.||+++.+|++||| +..+.+.++|++++.+.++++.+.+|++++ +..|..+||++|+++|
T Consensus 104 ~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~y 183 (774)
T PRK13026 104 QNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYW 183 (774)
T ss_pred hhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhh
Confidence 456789999999999999999999999987 678889999999999988877777776555 3478899999999999
Q ss_pred hhhhcccceEEEEEccCCCCCCCCCCCeeEEE-----EeCCCC---eEEEecCCCCceeeeecCccccccEEEEEEEeee
Q 011806 169 LRDTENYVVLGCFAMTELGHGSNVRGIETVTT-----YDANTG---EFIINTPCESAQKYWIGGAANHATHTIVFSQLEI 240 (477)
Q Consensus 169 l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~-----~~~~~~---~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~ 240 (477)
||++++|+.++||++|||++|||+.++.|+++ +++ + ||+|| |+|+|||++.. ||+++|.+++.+
T Consensus 184 LP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dG--d~~~gwvLN-----G~K~~IT~A~~-Ad~~~v~ar~~d 255 (774)
T PRK13026 184 LPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEG--EEVLGLRLT-----WDKRYITLAPV-ATVLGLAFKLRD 255 (774)
T ss_pred hHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecC--CccccEEEE-----EEEEeecCccc-cCEEEEEEEeeC
Confidence 99999999999999999999999999987765 343 4 69999 99999999997 999988877532
Q ss_pred -C-----CCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCC
Q 011806 241 -N-----GKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIK 314 (477)
Q Consensus 241 -~-----~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~ 314 (477)
+ +++.|+++|+||.+ .|||++.+.++++|+++. ++.+.|+||+||.+++||...
T Consensus 256 pd~~~g~~~~~GiT~fLVp~d------~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~------------- 315 (774)
T PRK13026 256 PDGLLGDKKELGITCALIPTD------HPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPD------------- 315 (774)
T ss_pred ccccccCCCCCceEEEEEECC------CCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcc-------------
Confidence 2 13568999999975 799999998999999874 689999999999999999510
Q ss_pred CcchHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHH---HHHHH
Q 011806 315 DPDQRFAAFMAPLTSGR-VIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLA---KSYAA 390 (477)
Q Consensus 315 ~~~~~~~~~~~~l~~~r-~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~---~~~a~ 390 (477)
.+++||..++..+..+| +.+++.++|+++.+++.+++|+++|+|||+| |+++|.+|++|++|.+ .++++
T Consensus 316 ~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~p-------Ig~fQ~Vq~~LAdma~~~y~lEaa 388 (774)
T PRK13026 316 YAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMP-------IGQFEGVQEALARIAGNTYLLEAA 388 (774)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 13789999999999999 8999999999999999999999999999999 9999999999999999 67889
Q ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCc--CchHHhhhcccccccccccHHH
Q 011806 391 SCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTE--NRVGHLKGEFDVQLTFEGDNNV 468 (477)
Q Consensus 391 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~--~~l~r~~rda~~~~~~~G~~~v 468 (477)
+.++++++ +. +......++++|+++++.+.+++++|+|+|||.||+.+ ++++++|||+++..+++|+|++
T Consensus 389 R~l~~~a~---D~-----G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei 460 (774)
T PRK13026 389 RRLTTTGL---DL-----GVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANIL 460 (774)
T ss_pred HHHHHHHH---HC-----CCCchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHH
Confidence 98887654 33 22345788999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHh
Q 011806 469 LMQQV 473 (477)
Q Consensus 469 l~~~v 473 (477)
++..+
T Consensus 461 ~R~l~ 465 (774)
T PRK13026 461 TRNLM 465 (774)
T ss_pred HHHHH
Confidence 98743
No 29
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7e-58 Score=454.55 Aligned_cols=348 Identities=22% Similarity=0.350 Sum_probs=328.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHH
Q 011806 90 QTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHE 166 (477)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~ 166 (477)
...|+....+...++.|+++|+|++.+|++++| ....++.++|.++.+|.++++.++.|.++....|..+||++|++
T Consensus 102 ~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~ 181 (634)
T KOG0137|consen 102 KKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQ 181 (634)
T ss_pred hhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHH
Confidence 456777889999999999999999999999987 77889999999999999999999999888888899999999999
Q ss_pred HhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCC----
Q 011806 167 KWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEING---- 242 (477)
Q Consensus 167 ~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~---- 242 (477)
+|||++++|+.+++|++|||..|||+.+..|+|+..++++.|+|| |.|.||+|++. ||+++|||++..++
T Consensus 182 kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn~g~-Adif~VfAqt~~~~~~g~ 255 (634)
T KOG0137|consen 182 KYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISNGGL-ADIFTVFAQTEVDPADGE 255 (634)
T ss_pred HHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEecCcc-ceeeeeeeccccCCCCcc
Confidence 999999999999999999999999999999999999888999999 99999999997 99999999998543
Q ss_pred CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHH
Q 011806 243 KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAA 322 (477)
Q Consensus 243 ~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~ 322 (477)
..+++++|||+ ++ .-||+-.+...+||.+|++..+|.|++|.||.+|+||. ++.||+.
T Consensus 256 ~k~k~T~Flve-r~-----~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~----------------~G~G~kv 313 (634)
T KOG0137|consen 256 VKRKITAFLVE-RD-----FGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGK----------------PGDGFKV 313 (634)
T ss_pred ccCceEEEEEe-cc-----ccCccCCCchhhhcccccceeeeeeccccccHHHhcCC----------------CCcchHH
Confidence 24579999999 44 68899999999999999999999999999999999997 8999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011806 323 FMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYV 402 (477)
Q Consensus 323 ~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~ 402 (477)
++..++.+|+.+++..+|.+|++++.+.+|+..|.|||++ |.++..+|.++++|...+|+++++.|..+..+|
T Consensus 314 a~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~-------L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D 386 (634)
T KOG0137|consen 314 AMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKK-------LHDFGLIQEKVAEMASKVYATESMLYLLSGLMD 386 (634)
T ss_pred HHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999888877
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011806 403 NRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 403 ~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
+. ..++...++++.|+++++.++.++++++|++||+||+.++++++.+||+++++||||+|+|++..||.
T Consensus 387 ~~---~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAl 456 (634)
T KOG0137|consen 387 EV---GAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIAL 456 (634)
T ss_pred cc---cceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHH
Confidence 62 34788999999999999999999999999999999999999999999999999999999999998874
No 30
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=3.7e-56 Score=454.80 Aligned_cols=367 Identities=17% Similarity=0.182 Sum_probs=311.3
Q ss_pred hcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHH----HHHHHHHHHcCccccccccccch---H
Q 011806 51 LLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMT----MKRISYLLERNVFEGWLTAKGAE---A 123 (477)
Q Consensus 51 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~l~~~Gl~~~~~p~~~Gg---~ 123 (477)
.+++|+.++++.+++|++++ +.|.......+.+.+| .++|++|.++||+++.+|+++|| +
T Consensus 3 ~lteeq~~l~~~~r~f~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~ 69 (395)
T TIGR03204 3 AFSKEEQAFRDEVRSFFKDN-------------VPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWT 69 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHh-------------CChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCC
Confidence 46788899999999999984 3332211111111222 28999999999999999999987 7
Q ss_pred HHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeC
Q 011806 124 ELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDA 203 (477)
Q Consensus 124 ~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~ 203 (477)
+.+.+.++|++++.+.+.++...++ +.+..|..+|+++|+++|||++.+|+.++|+++|||++|||+..+.|+|++++
T Consensus 70 ~~~~~~v~eelg~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g 147 (395)
T TIGR03204 70 SVQHYIFNEELQSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKG 147 (395)
T ss_pred HHHHHHHHHHHHhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcC
Confidence 8999999999999999887654443 44557888999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCC-CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccce
Q 011806 204 NTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEING-KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNG 282 (477)
Q Consensus 204 ~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~-~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~ 282 (477)
++|+|| |+|+||+|+.. ||+++|+|++++++ +..|+++|+||.+ .|||++.+...+.| +.+++
T Consensus 148 --~~~~Ln-----G~K~~vt~a~~-Ad~~lv~a~~~~~~~~~~g~~~flV~~~------~~Gv~~~~~~~~~~--~~~~~ 211 (395)
T TIGR03204 148 --DKWIIN-----GQKTWTTLAQH-ADWIFCLCRTDPTAKKQMGISFILVDMK------SKGITVRPIQTIDG--GVEVN 211 (395)
T ss_pred --CEEEEe-----eEEEeecCCcc-CCeEEEEEEeCCCCCCCCCeEEEEEeCC------CCCeEecChhhccC--CCcee
Confidence 899999 99999999997 99999999975332 3467899999975 69999977655554 77899
Q ss_pred eEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 011806 283 RIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSIT 362 (477)
Q Consensus 283 ~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~ 362 (477)
+|.|+||+||++++|+. ++.++...+..+...|+++++ +|+++++++.+++|+++|+|||+|
T Consensus 212 ~v~f~~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~ 273 (395)
T TIGR03204 212 EVFFDDVEVPYENLVGE----------------ENKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKP 273 (395)
T ss_pred EEEEcceEEcHHHcCCC----------------CCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCc
Confidence 99999999999999985 567888888899999999876 899999999999999999999999
Q ss_pred CCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 011806 363 PNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREA----- 437 (477)
Q Consensus 363 ~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~----- 437 (477)
|+++|.+|++|++|.+.++++|+++++++....... .......++++|.++++.+.++++.|+|+
T Consensus 274 -------i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~---~~~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~ 343 (395)
T TIGR03204 274 -------VIEDAKFREKLAAVEIELKALELTQLRVVADEGKHG---KGKPNPASSVLKIKGSEIQQATTELLMEVIGPFA 343 (395)
T ss_pred -------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999985332110 11123579999999999999999999985
Q ss_pred -----hccccccCc----CchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 438 -----CGGQGLKTE----NRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 438 -----~Gg~G~~~~----~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
|||.||+.+ ++++++|||++...+++|++++++..|+|.
T Consensus 344 ~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~ 391 (395)
T TIGR03204 344 APYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKA 391 (395)
T ss_pred ccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHH
Confidence 888999865 479999999999999999999999999874
No 31
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.7e-55 Score=450.80 Aligned_cols=367 Identities=23% Similarity=0.330 Sum_probs=324.3
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHH---HHHHHHHHHHHHHHcCccccccccccch---HHHHH
Q 011806 54 GHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQ---QREMTMKRISYLLERNVFEGWLTAKGAE---AELRK 127 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~ 127 (477)
.++.++++.+++|+++. +.|.. ...++ .+.+|.+.++++.+.|++++.+|+++|| +....
T Consensus 7 ~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~ 72 (393)
T COG1960 7 EEQEALRAEVREFAEEE-------------LAPEA-AEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQ 72 (393)
T ss_pred HHHHHHHHHHHHHHHHh-------------cCcch-hhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHH
Confidence 55678899999999984 33322 23332 5788899999999999999999999987 66778
Q ss_pred HHHHHHHhcccccchhhHhhhhhh---HHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCe-eEEEEeC
Q 011806 128 LALLEVTGIFDHSLAIKIGVHFFL---WGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIE-TVTTYDA 203 (477)
Q Consensus 128 ~~~~e~la~~~~s~~~~~~~h~~l---~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~-t~A~~~~ 203 (477)
..+.|++++.+++.++.+.++... ....+..+|+++|+++|+|++.+|++++|+++|||++|||+.++. |++++++
T Consensus 73 ~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~ 152 (393)
T COG1960 73 AAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDD 152 (393)
T ss_pred HHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecC
Confidence 899999999999887666554322 223567799999999999999999999999999999999999988 6666654
Q ss_pred CCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeC-CCcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccce
Q 011806 204 NTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEIN-GKNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNG 282 (477)
Q Consensus 204 ~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~-~~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~ 282 (477)
|+|+|| |+|+||||+.. |||++|+|+++++ .+.+|+++|+||.+. .|||++.+.|.+.|+++++++
T Consensus 153 --g~~~ln-----G~K~~is~~~~-ad~~~v~Ar~~~~~~~~~gis~flV~~~~-----~~Gv~~~~~~~~~G~r~~~~~ 219 (393)
T COG1960 153 --GDYVLN-----GQKIWISNAPV-ADWLLVLARTDPAPGKHKGISLFLVPKDL-----TPGVSVGPILKKMGLRGSATG 219 (393)
T ss_pred --CCEEEE-----eEEEEEcCCCC-CCEEEEEEEcCCcccccCceEEEEEeCCC-----CCCeeeccccCcCCcCCCCee
Confidence 449999 99999999997 9999999999876 356789999999752 399999998754499999999
Q ss_pred eEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 011806 283 RIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSIT 362 (477)
Q Consensus 283 ~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~ 362 (477)
+|.|+||+||.+++||. ++.||..++..+..+|+.+++.++|+++++++.+++|+++|++||+|
T Consensus 220 ~v~f~~v~vp~~~lig~----------------~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~ 283 (393)
T COG1960 220 EVFFDDVRVPAENLLGE----------------EGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRP 283 (393)
T ss_pred EEEECCeeccHHHcCCc----------------CCchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCc
Confidence 99999999999999995 78999999999999999999999999999999999999999999988
Q ss_pred CCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011806 363 PNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQG 442 (477)
Q Consensus 363 ~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G 442 (477)
|+++|.+|++|+++.+++++++++++++++..+... .....++++|.++++.+.++++.++|++||.|
T Consensus 284 -------i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~-----~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g 351 (393)
T COG1960 284 -------IADFQLVQFKLADMAAELEAARLLVLRAAELADAGD-----DAGAEAAMAKLFATEAALEVADEAVQVHGGYG 351 (393)
T ss_pred -------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999998887632 23378999999999999999999999999999
Q ss_pred ccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011806 443 LKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 443 ~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
|..+++++|+|||+++..+++|++++++..+++
T Consensus 352 ~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~ 384 (393)
T COG1960 352 YTEEYPVERYYRDARILRIYEGTSEIQRLIIAR 384 (393)
T ss_pred cccCchHHHHHHHhHhheeccCHHHHHHHHHHH
Confidence 999999999999999999999999999998886
No 32
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=8.2e-55 Score=446.98 Aligned_cols=373 Identities=17% Similarity=0.205 Sum_probs=315.1
Q ss_pred HHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHH--------HHH---HHHHHHHHHcCccccccccccch---HHH
Q 011806 60 RDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQR--------EMT---MKRISYLLERNVFEGWLTAKGAE---AEL 125 (477)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--------~~~---~~~~~~l~~~Gl~~~~~p~~~Gg---~~~ 125 (477)
++++++|+.+. +.|.. ..+|+.. .+| .+.|++|.+.||+++.+|+++|| ++.
T Consensus 2 ~~~~~~~~~~~-------------~~~~a-~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~ 67 (407)
T cd01153 2 LEEVARLAENV-------------LAPLN-ADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPIT 67 (407)
T ss_pred hHHHHHHHHHH-------------hhhhH-HhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHH
Confidence 56778888773 44432 3344433 277 67899999999999999999987 788
Q ss_pred HHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCC
Q 011806 126 RKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANT 205 (477)
Q Consensus 126 ~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~ 205 (477)
+.+.+.|+++++|.++++.+++|. ....|..+|+++|+++|++++.+|+.++|+++|||++|||+..+.|++++++ +
T Consensus 68 ~~~~~~e~l~~~~~s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~-~ 144 (407)
T cd01153 68 VYSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQA-D 144 (407)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECC-C
Confidence 888999999999999988777663 3456788899999999999999999999999999999999999999999974 3
Q ss_pred CeEEEecCCCCceeeeecCccccc----cEEEEEEEeeeCC-CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCccc
Q 011806 206 GEFIINTPCESAQKYWIGGAANHA----THTIVFSQLEING-KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVD 280 (477)
Q Consensus 206 ~~~ilntp~~~G~K~~is~a~~~A----~~~~v~A~~~~~~-~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~ 280 (477)
|+|+|| |+|+||||+.+ | ++++|++++.+++ +..++++|+||.+..++ ..|||++.+.|+++|+++++
T Consensus 145 ggy~l~-----G~K~~is~~~~-a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~-~~~gv~i~~~~~~~G~r~t~ 217 (407)
T cd01153 145 GSWRIN-----GVKRFISAGEH-DMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDG-ERNGVTVARIEEKMGLHGSP 217 (407)
T ss_pred CcEEEe-----eEEEEEeCCCc-ccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCC-CCCCeEeccchhccCCCCCC
Confidence 689999 99999999986 6 5788999975422 33578999999752111 12899999999999999999
Q ss_pred ceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 011806 281 NGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFS 360 (477)
Q Consensus 281 ~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg 360 (477)
+++|.|+||+|| +|+. ++.|+...+..+..+|+.+++.++|+++++|+.+++|+++|.+||
T Consensus 218 s~~v~f~~v~Vp---~lg~----------------~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg 278 (407)
T cd01153 218 TCELVFDNAKGE---LIGE----------------EGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGG 278 (407)
T ss_pred eEEEEEcCEEEe---eeCC----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecC
Confidence 999999999999 7775 567888888899999999999999999999999999999999999
Q ss_pred CCCC-CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hh--------hHHHHHHHHHHHHHHHHHH
Q 011806 361 ITPN-GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSN-KT--------IHVVSSAFKAILTWHNMRT 430 (477)
Q Consensus 361 ~~~~-~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~-~~--------~~~~~~~~K~~a~~~a~~~ 430 (477)
+|.. .+..++.++|.+|++|+++.+++++++++++++++.++....... .+ ....++++|+++++.+.++
T Consensus 279 ~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v 358 (407)
T cd01153 279 DLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEA 358 (407)
T ss_pred CcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8732 334568999999999999999999999999999999876321100 01 2456788999999999999
Q ss_pred HHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHH-Hhhc
Q 011806 431 LQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQ-QVLL 475 (477)
Q Consensus 431 ~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~-~va~ 475 (477)
++.++++|||.||.++++++|+|||+++..+++|++++++. .+++
T Consensus 359 ~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~ 404 (407)
T cd01153 359 VSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR 404 (407)
T ss_pred HHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998877 4443
No 33
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=3.4e-54 Score=438.97 Aligned_cols=360 Identities=18% Similarity=0.213 Sum_probs=312.3
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCccCCCccccCCccc----CCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHH
Q 011806 54 GHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYN----QTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELR 126 (477)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~ 126 (477)
+|++++++.+++|++++ +.|... ..+++.+.+|.+.++.|.+.||+++.+|+++|| ++.+
T Consensus 1 ~~~~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~ 67 (380)
T cd01152 1 PSEEAFRAEVRAWLAAH-------------LPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLME 67 (380)
T ss_pred CcHHHHHHHHHHHHHhc-------------CCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHH
Confidence 36779999999999984 334321 123455779999999999999999999999987 7889
Q ss_pred HHHHHHHHhcccccchhh-HhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCC
Q 011806 127 KLALLEVTGIFDHSLAIK-IGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANT 205 (477)
Q Consensus 127 ~~~~~e~la~~~~s~~~~-~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~ 205 (477)
.+.++|++++.|.++++. ..+| +++..+..+|+++|+++||+++.+|+.++++++|||++|||+..+.|++++++
T Consensus 68 ~~~~~e~l~~~~~~~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~-- 143 (380)
T cd01152 68 QLIFREEMAAAGAPVPFNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDG-- 143 (380)
T ss_pred HHHHHHHHHhcCCCcccchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcC--
Confidence 999999999999998875 4433 45567889999999999999999999999999999999999999999999975
Q ss_pred CeEEEecCCCCceeeeecCccccccEEEEEEEeeeCC-CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeE
Q 011806 206 GEFIINTPCESAQKYWIGGAANHATHTIVFSQLEING-KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRI 284 (477)
Q Consensus 206 ~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~-~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i 284 (477)
++|+|| |+|+||||+.. ||+++|+|++.+++ +..++.+|+||.+ .|||++.+.|.++| +++++++
T Consensus 144 ~g~~L~-----G~K~~it~~~~-ad~~lv~a~~~~~~~~~~~~~~~lVp~~------~~Gv~~~~~~~~~g--~~~~~~l 209 (380)
T cd01152 144 DDWVVN-----GQKIWTSGAHY-ADWAWLLVRTDPEAPKHRGISILLVDMD------SPGVTVRPIRSING--GEFFNEV 209 (380)
T ss_pred CeEEEe-----cEEEEEcCccc-cCEEEEEEEeCCCccCcCCeEEEEEeCC------CCceEeeehhhccC--CCCcceE
Confidence 899999 99999999997 99999999976433 2347899999975 69999999998888 6789999
Q ss_pred EecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 011806 285 WFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPN 364 (477)
Q Consensus 285 ~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~ 364 (477)
.|+||+||++++|+. ++.++..+...+...|+.+++. +..+++.+++|+++|.+||+|
T Consensus 210 ~f~~v~Vp~~~~lg~----------------~~~g~~~~~~~l~~~r~~~~~~----~~~~~~~a~~~a~~r~~~g~~-- 267 (380)
T cd01152 210 FLDDVRVPDANRVGE----------------VNDGWKVAMTTLNFERVSIGGS----AATFFELLLARLLLLTRDGRP-- 267 (380)
T ss_pred EecCcCcchhcccCC----------------CCchHHHHHHHHHhcccccchh----hhHHHHHHHHHHHHHHhcCCC--
Confidence 999999999999986 6778888777788888876544 455555667888889999988
Q ss_pred CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 011806 365 GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLK 444 (477)
Q Consensus 365 ~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~ 444 (477)
|.++|.+|++|++|.+++++++++++++++.+++. ......++++|+++++.+.++++.++|++||.||.
T Consensus 268 -----l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~-----~~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~ 337 (380)
T cd01152 268 -----LIDDPLVRQRLARLEAEAEALRLLVFRLASALAAG-----KPPGAEASIAKLFGSELAQELAELALELLGTAALL 337 (380)
T ss_pred -----cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCChHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999999999999999999998753 22345678999999999999999999999999999
Q ss_pred Cc--------CchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 445 TE--------NRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 445 ~~--------~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.+ ++++|++||+++..+++|++++++..++|.
T Consensus 338 ~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~ 377 (380)
T cd01152 338 RDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAER 377 (380)
T ss_pred cccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHH
Confidence 88 699999999999999999999999999874
No 34
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-53 Score=451.77 Aligned_cols=377 Identities=15% Similarity=0.207 Sum_probs=312.7
Q ss_pred HHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHH---------H---HHHHHHHHHcCccccccccccch---
Q 011806 58 QERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREM---------T---MKRISYLLERNVFEGWLTAKGAE--- 122 (477)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---------~---~~~~~~l~~~Gl~~~~~p~~~Gg--- 122 (477)
++++.+++|.++ ++.|.. .+.|+.+.+ | .+.|+++.+.||+++.+|+++||
T Consensus 62 ~il~~a~~fa~~-------------~~~p~~-~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl 127 (622)
T PTZ00456 62 SLLEEASKLATQ-------------TLLPLY-ESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQAL 127 (622)
T ss_pred HHHHHHHHHHHH-------------hcccch-hhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCc
Confidence 668888999987 355543 344544322 3 57999999999999999999987
Q ss_pred HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEe
Q 011806 123 AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYD 202 (477)
Q Consensus 123 ~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~ 202 (477)
+......+.|.++..+++++...+++. ..+..|..+|+++||++|||++.+|++++++++|||++|||+..++|+|+++
T Consensus 128 ~~~~~~~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~ 206 (622)
T PTZ00456 128 PLSVGFITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPS 206 (622)
T ss_pred CHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEEC
Confidence 444334445556677777655444432 2346789999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEecCCCCceeeeecCccccc----cEEEEEEEeeeC-CCcCceEEEEEEeeCC--CCC--CCCCeEEccCCCc
Q 011806 203 ANTGEFIINTPCESAQKYWIGGAANHA----THTIVFSQLEIN-GKNQGVHAFICQIRDA--AGN--ICPNIRIADCGHK 273 (477)
Q Consensus 203 ~~~~~~ilntp~~~G~K~~is~a~~~A----~~~~v~A~~~~~-~~~~g~~~flV~~~~~--~~~--~~pGv~i~~~~~~ 273 (477)
+ +|+|+|| |+|+|||++.+ + ++++|+||++++ .+.+|+++|+||++.. +|. ..+||++....+|
T Consensus 207 g-dG~y~L~-----G~K~fIt~g~~-~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~k 279 (622)
T PTZ00456 207 A-DGSYKIT-----GTKIFISAGDH-DLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKK 279 (622)
T ss_pred C-CCcEEEe-----eEEEEecCCch-hhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccc
Confidence 6 3479999 99999999985 4 688999998753 3457899999997532 342 2468999899999
Q ss_pred cccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011806 274 IGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYS 353 (477)
Q Consensus 274 ~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya 353 (477)
||+++++++.|.|+| |.+++||. +++|+..++..++.+|+.+++.++|+++++++.+++|+
T Consensus 280 mG~~gs~t~~l~fd~---~~~~llG~----------------~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YA 340 (622)
T PTZ00456 280 MGIKGSSTCQLSFEN---SVGYLIGE----------------PNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYA 340 (622)
T ss_pred cCCCCCceEEEEeeC---hhHhhcCC----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 46789996 78899999999999999999999999999999999999
Q ss_pred hhccccCCCCC-----CCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--------hhhHHHHHHHH
Q 011806 354 LSRRAFSITPN-----GPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSN--------KTIHVVSSAFK 420 (477)
Q Consensus 354 ~~R~qfg~~~~-----~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~K 420 (477)
++|+||+.+.+ ...++|+++|.+|++|++|.+.++++|++++++++.++....... ......++++|
T Consensus 341 k~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK 420 (622)
T PTZ00456 341 RERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAK 420 (622)
T ss_pred HhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHH
Confidence 99999854322 245789999999999999999999999999999999886421111 11345788999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHH-HHhhc
Q 011806 421 AILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLM-QQVLL 475 (477)
Q Consensus 421 ~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~-~~va~ 475 (477)
+++++.+.++++.|+|+|||+||+++++++++|||+++..+++|++++++ ..|+|
T Consensus 421 ~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~r 476 (622)
T PTZ00456 421 GCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGR 476 (622)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 46665
No 35
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=1.2e-53 Score=471.72 Aligned_cols=373 Identities=18% Similarity=0.231 Sum_probs=320.2
Q ss_pred hhcCCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHH-------HHHH-HHHHHHHH-HcCccccccccc-
Q 011806 50 KLLDGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQ-------REMT-MKRISYLL-ERNVFEGWLTAK- 119 (477)
Q Consensus 50 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------~~~~-~~~~~~l~-~~Gl~~~~~p~~- 119 (477)
+.+++++.++++++++|++++ +.|.. .++++. ..+| .+.|+++. ++||+++.+|++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~-------------~~p~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~ 465 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDH-------------IYPME-NEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDS 465 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHH-------------ccCcc-HHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchh
Confidence 456778889999999999984 44432 223322 1366 68888886 999999999995
Q ss_pred -----------------------cch---HHHHHHHHHHHHhcccccchh-hHhhhhhhHHHHHhccCCHHHHHHhhhhh
Q 011806 120 -----------------------GAE---AELRKLALLEVTGIFDHSLAI-KIGVHFFLWGGAIQFFGTQRHHEKWLRDT 172 (477)
Q Consensus 120 -----------------------~Gg---~~~~~~~~~e~la~~~~s~~~-~~~~h~~l~~~~i~~~gt~~q~~~~l~~i 172 (477)
+|| +..+.+.+.|++++++.+... ....+.......|..+|+++||++||+++
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l 545 (822)
T PLN02876 466 AARARKLLFEDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPL 545 (822)
T ss_pred hhhhhhcccccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHH
Confidence 666 788999999999998654222 12222223345688999999999999999
Q ss_pred cccceEEEEEccCCC-CCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCc--cccccEEEEEEEeeeCC-CcCceE
Q 011806 173 ENYVVLGCFAMTELG-HGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGA--ANHATHTIVFSQLEING-KNQGVH 248 (477)
Q Consensus 173 ~~g~~~~~~a~tE~~-~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a--~~~A~~~~v~A~~~~~~-~~~g~~ 248 (477)
.+|++++|+++|||+ +|||+.++.|+|++++ |+|+|| |+|+||+|+ .. ||+++|+|++.++. +..+++
T Consensus 546 ~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g--~g~vLn-----G~K~~vtga~~~~-ad~~lv~ar~~~~~~~~~~~s 617 (822)
T PLN02876 546 LEGKIRSGFAMTEPQVASSDATNIECSIRRQG--DSYVIN-----GTKWWTSGAMDPR-CRVLIVMGKTDFNAPKHKQQS 617 (822)
T ss_pred hCCCceeEEEecCCCccCcccccceEEEEEcC--CEEEEE-----eEEEEecCCCCCC-CCEEEEEEecCCCCCCCCcce
Confidence 999999999999997 6899999999999986 899999 999999999 44 99999999985432 235689
Q ss_pred EEEEEeeCCCCCCCCCeEEccCCCccccCcc--cceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhH
Q 011806 249 AFICQIRDAAGNICPNIRIADCGHKIGLNGV--DNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAP 326 (477)
Q Consensus 249 ~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~--~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 326 (477)
+|+||.+ .|||++.+.|+++|++++ ++++|.|+||+||++++|+. ++.|+..+...
T Consensus 618 ~flV~~~------~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~----------------~g~g~~~~~~~ 675 (822)
T PLN02876 618 MILVDIQ------TPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLG----------------EGRGFEIAQGR 675 (822)
T ss_pred EEEEeCC------CCCceeecccceeccCCCCCCeeEEEEcceeechhheecC----------------CCchHHHHHHH
Confidence 9999975 699999989999999984 58899999999999999985 67788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011806 327 LTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTP 406 (477)
Q Consensus 327 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~ 406 (477)
+..+|+.+++.++|++++|++.+++|+++|+|||+| |+++|.+|++|++|.+.+++++++++++++.++...
T Consensus 676 l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~-------i~~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~- 747 (822)
T PLN02876 676 LGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKL-------IAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLG- 747 (822)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-------hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 999999999999999999999999999999999999 999999999999999999999999999999887521
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 407 QSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 407 ~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.......++++|+++++.+.++++.|+|+|||.||+.+++++++|||+++..+++|++++++..|+|.
T Consensus 748 --~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~ 815 (822)
T PLN02876 748 --NKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKL 815 (822)
T ss_pred --CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHH
Confidence 12345678999999999999999999999999999999999999999999999999999999999873
No 36
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=9.7e-52 Score=424.81 Aligned_cols=339 Identities=21% Similarity=0.217 Sum_probs=290.6
Q ss_pred HHHHHHHHHcCccccccccccch-HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccc--
Q 011806 100 MKRISYLLERNVFEGWLTAKGAE-AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYV-- 176 (477)
Q Consensus 100 ~~~~~~l~~~Gl~~~~~p~~~Gg-~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~-- 176 (477)
.++++.+.+.||+++ +|.++|+ +........+.++..+.+.+..+.+|. .++..|..+|+++|+ +||+++.+|+
T Consensus 68 ~~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~ 144 (418)
T cd01154 68 HALMRRLIEEGVINI-EDGPAGEGRRHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYK 144 (418)
T ss_pred HHHHHHHHHcCCccC-CchhhCCCcHHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcc
Confidence 678899999999998 5544433 223333456667777666666655664 577889999998874 6999999997
Q ss_pred --eEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeC-CCcCceEEEEEE
Q 011806 177 --VLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEIN-GKNQGVHAFICQ 253 (477)
Q Consensus 177 --~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~-~~~~g~~~flV~ 253 (477)
+++|+++|||++|||+.+++|+|++++ +|+|+|| |+|+|+|++ . ||+++|+||++++ ++.+|+++|+||
T Consensus 145 ~~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G~K~f~s~a-~-Ad~~lv~Art~~~~~~~~gls~flVp 216 (418)
T cd01154 145 TGLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----GHKWFASAP-L-ADAALVLARPEGAPAGARGLSLFLVP 216 (418)
T ss_pred cchhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----EEEEEecCc-c-cCEEEEEEECCCCCCCCCcEEEEEEe
Confidence 899999999999999999999999983 3899999 999999999 7 9999999998754 345789999999
Q ss_pred eeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHH
Q 011806 254 IRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVI 333 (477)
Q Consensus 254 ~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~ 333 (477)
.+..++ ..|||++.+.|+++|++++++++|.|+|| .+++||. ++.|+..++..+..+|+.
T Consensus 217 ~~~~~~-~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~----------------~g~G~~~~~~~l~~~R~~ 276 (418)
T cd01154 217 RLLEDG-TRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGD----------------EGKGIYYILEMLNISRLD 276 (418)
T ss_pred ccCCCC-CCCCeEecccccccCCCCCCeEEEEecCc---CccccCC----------------CCccHHHHHHHHHHHHHH
Confidence 764222 13699999999999999999999999998 3788986 778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---h
Q 011806 334 IAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSN---K 410 (477)
Q Consensus 334 ~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~---~ 410 (477)
+++.++|+++++++.+++|+++|++||++ |+++|.+|++|+++.+.+++++++++++++.++....... .
T Consensus 277 ~aa~~~G~a~~al~~a~~ya~~R~~fg~~-------l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~ 349 (418)
T cd01154 277 NAVAALGIMRRALSEAYHYARHRRAFGKP-------LIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAH 349 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCCc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHH
Confidence 99999999999999999999999999998 9999999999999999999999999999998875321111 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 411 TIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 411 ~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.....++++|+++++.+.++++.|+|++||.||..+++++|+|||+++..+++|++++++..++|.
T Consensus 350 ~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~ 415 (418)
T cd01154 350 MARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRV 415 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHH
Confidence 123467889999999999999999999999999999999999999999999999999999998873
No 37
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.5e-51 Score=419.34 Aligned_cols=344 Identities=17% Similarity=0.141 Sum_probs=292.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHH
Q 011806 90 QTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHE 166 (477)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~ 166 (477)
.++|+.+.+|.+.|+.|.+.||+++.+|+++|| ++.+.+.++|++++.|+++++.+.+|. .....+..+|+++|++
T Consensus 15 ~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~ 93 (377)
T cd01163 15 AERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRK 93 (377)
T ss_pred hhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHH
Confidence 467888889999999999999999999999987 788999999999999999999888875 3456788999999999
Q ss_pred HhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCc
Q 011806 167 KWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQG 246 (477)
Q Consensus 167 ~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g 246 (477)
+|++++.+|++++ .++|||++|+ ...+.+++++++ |||+|| |+|.||||+.. |||++|+|++++ .+
T Consensus 94 ~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~--~g~~ln-----G~K~~is~a~~-Ad~~~v~a~~~~----~~ 159 (377)
T cd01163 94 RWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDG--GGYVLN-----GKKFYSTGALF-SDWVTVSALDEE----GK 159 (377)
T ss_pred HHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecC--CEEEEe-----ceEEeecCCcc-ceEEEEEEEcCC----Cc
Confidence 9999999999775 5999999886 666777777664 899999 99999999997 999999998642 34
Q ss_pred eEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhH
Q 011806 247 VHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAP 326 (477)
Q Consensus 247 ~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 326 (477)
+.+|+||.+ .|||++.+.|+++|++++++++|.|+||+||++++|+. ++.++. ....
T Consensus 160 ~~~~lV~~~------~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~----------------~~~g~~-~~~~ 216 (377)
T cd01163 160 LVFAAVPTD------RPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPR----------------PNAPDR-GTLL 216 (377)
T ss_pred EEEEEEeCC------CCceeecCCcccccCccCCcceEEEeeEEECHHHccCC----------------Cccccc-cccc
Confidence 788999975 69999999999999999999999999999999999996 233322 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011806 327 LTSGRVIIAGSSVYKAKIGLAIAIRYSLSRR-AFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRT 405 (477)
Q Consensus 327 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~-qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~ 405 (477)
+...|+.+++.++|+++++++.+++|+++|+ +||++.. .++.++|.+|++|++|.+++++++++++++++.+++..
T Consensus 217 ~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~---~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~ 293 (377)
T cd01163 217 TAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGA---ESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAA 293 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCc---cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999999995 7876411 13899999999999999999999999999999998632
Q ss_pred CCC-------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011806 406 PQS-------NKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 406 ~~~-------~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
... .......++++|+++++.+.++++.|+|++||.||+++++++|+|||+++..++...+... ..++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~~~~-~~~~~ 369 (377)
T cd01163 294 AAGTALTAEARGEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVIYKE-RAVGD 369 (377)
T ss_pred hccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHHHHH-HHhch
Confidence 110 1134567889999999999999999999999999999999999999999998888775433 34543
No 38
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=4.9e-49 Score=409.08 Aligned_cols=335 Identities=17% Similarity=0.168 Sum_probs=279.9
Q ss_pred HHHHHHHHHcCccccccccccch-HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccc--
Q 011806 100 MKRISYLLERNVFEGWLTAKGAE-AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYV-- 176 (477)
Q Consensus 100 ~~~~~~l~~~Gl~~~~~p~~~Gg-~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~-- 176 (477)
.+.++.+.+.||.++..+++++. .....+...-..+..++.....+++ +.++..++.+++++|+++|+|++.+|+
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~cp~~m--T~~a~~~l~~~~~e~~~~~lp~l~sg~~~ 166 (538)
T PRK11561 89 HLLMQGLCANRVHNLAWEEDARSGAFVARAARFMLHAQVEAGTLCPITM--TFAATPLLLQMLPAPFQDWLTPLLSDRYD 166 (538)
T ss_pred HHHHHHHHHcCCccCCCCCccCchHHHHHHHHHHHHhhhhHHhhchHHH--HHHHHHHHHhcCHHHHHHHHHHHhCCCcc
Confidence 35667788899999888776653 2222222222223344443333333 345666778899999999999999987
Q ss_pred -----------eEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcC
Q 011806 177 -----------VLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQ 245 (477)
Q Consensus 177 -----------~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~ 245 (477)
+++++++|||++|||+..++|+|++++ +|+|+|| |+|+||| ++. ||+++|+||++ .
T Consensus 167 ~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln-----G~K~fiS-a~~-AD~~lVlArt~-----~ 233 (538)
T PRK11561 167 SHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV-----GHKWFFS-VPQ-SDAHLVLAQAK-----G 233 (538)
T ss_pred cccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-----EEEEEEE-chh-hCEEEEEEEEC-----C
Confidence 567999999999999999999999963 4789999 9999999 576 99999999984 4
Q ss_pred ceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHh
Q 011806 246 GVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMA 325 (477)
Q Consensus 246 g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 325 (477)
|+++|+||.+..+| ..+||++...++|+|++++++++|.|+|| .+++||. +++|+..++.
T Consensus 234 Gls~FlVp~~~p~g-~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~----------------~g~G~~~i~~ 293 (538)
T PRK11561 234 GLSCFFVPRFLPDG-QRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGE----------------EGEGIRLILK 293 (538)
T ss_pred ceEEEEEECCCCCC-CCCceEEecccccccCCCCceeEEEECCH---HHHHCCC----------------CCchHHHHHH
Confidence 79999999753222 12489999999999999999999999998 4789996 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011806 326 PLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRT 405 (477)
Q Consensus 326 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~ 405 (477)
.++..|+.+++.++|+++++++.+++|+++|++||+| |+++|.+|++|++|.+.+++++++++++++.++...
T Consensus 294 ~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~-------L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~ 366 (538)
T PRK11561 294 MGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKP-------LIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRA 366 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCc-------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999998632
Q ss_pred CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 406 PQSN-KTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 406 ~~~~-~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
.... ......++++|.++++.+.+++++|+|++||.||.++++++|+|||+++..++||++++++..|+|.
T Consensus 367 ~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~ 438 (538)
T PRK11561 367 DAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRV 438 (538)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHH
Confidence 1100 1234567789999999999999999999999999999999999999999999999999999988763
No 39
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.5e-48 Score=389.70 Aligned_cols=325 Identities=22% Similarity=0.350 Sum_probs=287.1
Q ss_pred CcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHHHH
Q 011806 55 HNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAEAELRKLALLEVT 134 (477)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg~~~~~~~~~e~l 134 (477)
++.++++.+++|+.++ +.|.. ....+++...|+.+.+.|++
T Consensus 2 ~~~~~~~~~~~~~~~~-------------~~~~~----~~~~~~~~~~~~~~~~~g~~---------------------- 42 (327)
T cd00567 2 EQRELRDSAREFAAEE-------------LEPYA----RERRETPEEPWELLAELGLL---------------------- 42 (327)
T ss_pred hHHHHHHHHHHHHHHh-------------ccccH----HhHHhhCCCCHHHHHHHHHH----------------------
Confidence 4568899999999884 33322 12333555566677776666
Q ss_pred hcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCC
Q 011806 135 GIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPC 214 (477)
Q Consensus 135 a~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~ 214 (477)
+++..|..+|+++|+++|++++.+|+.++|+++|||++|||...+.+++++++ +||+||
T Consensus 43 ----------------~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~--~g~~l~--- 101 (327)
T cd00567 43 ----------------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDG--DGYVLN--- 101 (327)
T ss_pred ----------------hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeC--CEEEEE---
Confidence 34556888899999999999999999999999999999999999999999986 899999
Q ss_pred CCceeeeecCccccccEEEEEEEeeeCC-CcCceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCc
Q 011806 215 ESAQKYWIGGAANHATHTIVFSQLEING-KNQGVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPR 293 (477)
Q Consensus 215 ~~G~K~~is~a~~~A~~~~v~A~~~~~~-~~~g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~ 293 (477)
|+|+|++|+.. |||++|++++..++ +..++.+|+||.+ .|||++.+.|.++|+++++++.+.|+||+||+
T Consensus 102 --G~k~~~s~~~~-ad~~lv~a~~~~~~~~~~~~~~~lvp~~------~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~ 172 (327)
T cd00567 102 --GRKIFISNGGD-ADLFIVLARTDEEGPGHRGISAFLVPAD------TPGVTVGRIWDKMGMRGSGTGELVFDDVRVPE 172 (327)
T ss_pred --EEEEEecCCcc-CCEEEEEEEeCCCCCCCCceEEEEEeCC------CCCeEeccccccccCCCCceEEEEECCEEecH
Confidence 99999999997 99999999986543 3456889999976 59999999999999999999999999999999
Q ss_pred ccccCCCCCcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccc
Q 011806 294 ENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDY 373 (477)
Q Consensus 294 ~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~ 373 (477)
+++|+. ++.++......+...|+.+++.++|+++++++.+++|+++|.|||.| +.++
T Consensus 173 ~~~l~~----------------~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~~-------~~~~ 229 (327)
T cd00567 173 DNLLGE----------------EGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKP-------LAEF 229 (327)
T ss_pred HHcCCC----------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc-------cccc
Confidence 999986 45667677788889999999999999999999999999999999998 9999
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhh
Q 011806 374 PSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLK 453 (477)
Q Consensus 374 ~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~ 453 (477)
|.+|++|+++.+.+++++++++.+++.++... ......++++|+++++.+.++++.|+++|||.||..+++++|+|
T Consensus 230 ~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~ 305 (327)
T cd00567 230 QAVQFKLADMAAELEAARLLLYRAAWLLDQGP----DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYL 305 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHH
Confidence 99999999999999999999999999987631 22567888999999999999999999999999999999999999
Q ss_pred hcccccccccccHHHHHHHhhc
Q 011806 454 GEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 454 rda~~~~~~~G~~~vl~~~va~ 475 (477)
||+++..+++|++++++.+++|
T Consensus 306 rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 306 RDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HhhhcceeecCHHHHHHHHhcC
Confidence 9999999999999999998875
No 40
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=2.7e-47 Score=387.00 Aligned_cols=340 Identities=15% Similarity=0.087 Sum_probs=282.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHH
Q 011806 90 QTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHE 166 (477)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~ 166 (477)
.++|+.+.+|.+.|+.|.+.||+++.+|+++|| ++.+.+.+.|++++.|+|+++....+. .....+..+++++|++
T Consensus 15 ~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~ 93 (370)
T cd01159 15 PEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFPPEAQEE 93 (370)
T ss_pred HHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCCHHHHHH
Confidence 457777889999999999999999999999987 788999999999999999987765543 5566777889999998
Q ss_pred HhhhhhcccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeeeCCCcCc
Q 011806 167 KWLRDTENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEINGKNQG 246 (477)
Q Consensus 167 ~~l~~i~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~~~~~~g 246 (477)
.|++.. .+.+.++ ..+.|+|++++ |+|+|| |+|.|||++.. |||++|+|++.++++..+
T Consensus 94 ~~~~~~-~~~~~g~------------~~~~t~A~~~~--~gy~ln-----G~K~~it~~~~-ad~~~v~a~~~~~~~~~~ 152 (370)
T cd01159 94 VWGDGP-DTLLAGS------------YAPGGRAERVD--GGYRVS-----GTWPFASGCDH-ADWILVGAIVEDDDGGPL 152 (370)
T ss_pred HhCCCC-CceEEee------------ecCCceeEEeC--CeEEEe-----ccccCccCCCc-CceeEeeeECCCCCCCCc
Confidence 887753 1111221 23567888875 899999 99999999997 999999999864434567
Q ss_pred eEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHH---HH
Q 011806 247 VHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFA---AF 323 (477)
Q Consensus 247 ~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~---~~ 323 (477)
+++|+||. .||++.+.|+++||++++++.|.|+||+||++++|+........ ..++. ..
T Consensus 153 ~~~~lV~~--------~Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~----------~~g~~~~~~~ 214 (370)
T cd01159 153 PRAFVVPR--------AEYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGD----------GPGGSTPVYR 214 (370)
T ss_pred ceEEEEEh--------HHCEEecccccccccccCCCcEEEcceEcCccceecccccccCC----------CCCCCCcccc
Confidence 99999994 38999999999999999999999999999999999742111000 01100 11
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---CCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 011806 324 MAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAF---SITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMM 400 (477)
Q Consensus 324 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qf---g~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~ 400 (477)
...+..+|+.+++.++|+++++++.+++|+++|.+| |+| |.++|.+|++|++|.+.+++++++++++++.
T Consensus 215 ~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~-------i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~ 287 (370)
T cd01159 215 MPLRQVFPLSFAAVSLGAAEGALAEFLELAGKRVRQYGAAVK-------MAEAPITQLRLAEAAAELDAARAFLERATRD 287 (370)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCCccc-------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223456789999999999999999999999999998 555 9999999999999999999999999999999
Q ss_pred HHhcCCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccH-HHHHHHhhcC
Q 011806 401 YVNRTPQ---SNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDN-NVLMQQVLLS 476 (477)
Q Consensus 401 ~~~~~~~---~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~-~vl~~~va~~ 476 (477)
++..... ........++++|+++++.+.++++.+++++||.||.++++++|+|||+++..+++|++ ++++..++|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~ 367 (370)
T cd01159 288 LWAHALAGGPIDVEERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRA 367 (370)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHH
Confidence 9864211 11234567889999999999999999999999999999999999999999999999999 9999999874
No 41
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-44 Score=373.54 Aligned_cols=299 Identities=15% Similarity=0.139 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHc-Cccccccccccch---HHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhh
Q 011806 97 EMTMKRISYLLER-NVFEGWLTAKGAE---AELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDT 172 (477)
Q Consensus 97 ~~~~~~~~~l~~~-Gl~~~~~p~~~Gg---~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i 172 (477)
.+-.++-+.++++ ||+++.+|++||| +..+.+.++|++++.+++.++.+..|..++...|..+|+++||++|||++
T Consensus 50 ~~~~~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~l 129 (520)
T PTZ00457 50 SLLEQIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAM 129 (520)
T ss_pred HHHHHHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3333444478899 9999999999988 78999999999999888776655567656667788899999999999999
Q ss_pred cccceEEEEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEeee----C-C--CcC
Q 011806 173 ENYVVLGCFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQLEI----N-G--KNQ 245 (477)
Q Consensus 173 ~~g~~~~~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~~~----~-~--~~~ 245 (477)
++|+.+++++++| +.|||+..+.|+|++++ +|+|+|| |+|.|+ ++.. ||+++|+|++.+ + + ..+
T Consensus 130 asGe~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~g~~-Ad~~lV~Art~~~~~~~~g~~~~~ 200 (520)
T PTZ00457 130 SDGTIMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-FAAS-ATHFLVLAKTLTQTAAEEGATEVS 200 (520)
T ss_pred hCCCcEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-cCch-hcEEEEEeecCCcccccccccCcC
Confidence 9999999999998 99999999999999874 3689999 999976 7776 999999999853 1 1 135
Q ss_pred ceEEEEEEeeCCCCCCCCCeEEccCCCccccCcccceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHh
Q 011806 246 GVHAFICQIRDAAGNICPNIRIADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMA 325 (477)
Q Consensus 246 g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 325 (477)
|+++|+||.+ .|||++.+ ++|.|||| |.+++||. ++.||+.++.
T Consensus 201 git~FlV~~d------apGVtv~~------------~eV~FddV--P~~~vLG~----------------~g~G~~~a~~ 244 (520)
T PTZ00457 201 RNSFFICAKD------AKGVSVNG------------DSVVFENT--PAADVVGV----------------VGEGFKDAMI 244 (520)
T ss_pred ceEEEEEECC------CCceEEec------------CEEEECCC--CHHHhCCC----------------CCchHHHHHH
Confidence 7999999975 79999853 58999997 99999996 7889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011806 326 PLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRT 405 (477)
Q Consensus 326 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~ 405 (477)
.++.+|+.+++.++|+++++++.+++|++ +|.+|++|++|.+.+++++++++++++.+|..
T Consensus 245 ~L~~~Rl~~aA~~vGia~~ale~av~ya~------------------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g- 305 (520)
T PTZ00457 245 TLFTEQYLYAASLLGIMKRVVQELRGSNA------------------EEGATDTVASFACAMYAMESTLYALTANLDLP- 305 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 99999999999999999999999999984 26899999999999999999999999999862
Q ss_pred CCCchhhHHHHHHHHHHHH---HHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHH
Q 011806 406 PQSNKTIHVVSSAFKAILT---WHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLM 470 (477)
Q Consensus 406 ~~~~~~~~~~~~~~K~~a~---~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~ 470 (477)
..+....++++|+|++ +.++.++++++| .++|++|++||++++.++||+|++|+
T Consensus 306 ---~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 306 ---TEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred ---CcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 3567899999999999 888888888877 89999999999999999999999998
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=315.02 Aligned_cols=333 Identities=18% Similarity=0.235 Sum_probs=290.9
Q ss_pred HHHH-HHcCccccccccc---cch--HHHHHHHHHHHHhcccccchhhHhhhh--hhHHHHHhccCCHHHHHHhhhhhcc
Q 011806 103 ISYL-LERNVFEGWLTAK---GAE--AELRKLALLEVTGIFDHSLAIKIGVHF--FLWGGAIQFFGTQRHHEKWLRDTEN 174 (477)
Q Consensus 103 ~~~l-~~~Gl~~~~~p~~---~Gg--~~~~~~~~~e~la~~~~s~~~~~~~h~--~l~~~~i~~~gt~~q~~~~l~~i~~ 174 (477)
++++ +..|++.+++|.. ||. ...+++.+.|.+++.-..- -.+..+. .-..-.|..||+++|+.+||-++..
T Consensus 32 LKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~AP-eVfNC~APDTGNMEvl~rYGseeQks~WL~PLLe 110 (392)
T KOG1469|consen 32 LKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAP-EVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLE 110 (392)
T ss_pred HHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccc-hhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhc
Confidence 4443 4569999999987 553 7789999999999854321 1222211 1113458899999999999999999
Q ss_pred cceEEEEEccCCCC-CCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccc-cccEEEEEEEeeeCC--CcCceEEE
Q 011806 175 YVVLGCFAMTELGH-GSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAAN-HATHTIVFSQLEING--KNQGVHAF 250 (477)
Q Consensus 175 g~~~~~~a~tE~~~-Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~-~A~~~~v~A~~~~~~--~~~g~~~f 250 (477)
|++..||+||||.. .||..++++..++++ +.|+|| |+|||+||+.+ -|..+++..+++... .+...++.
T Consensus 111 G~irScFaMTEP~VASSDATNIe~SI~r~~--~~YvIN-----g~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmi 183 (392)
T KOG1469|consen 111 GNIRSCFAMTEPDVASSDATNIECSIRRDG--DSYVIN-----GKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMI 183 (392)
T ss_pred CCceeeEeecCCcccccccccceEEEEEcC--CEEEEe-----cceeeecCCCCCceEEEEEecccCCCccchhhcccEE
Confidence 99999999999995 789999999999986 999999 99999999863 367888888887652 45568999
Q ss_pred EEEeeCCCCCCCCCeEEccCCCccccCcc--cceeEEecceecCcccccCCCCCcCCCCcccccCCCcchHHHHHHhHHH
Q 011806 251 ICQIRDAAGNICPNIRIADCGHKIGLNGV--DNGRIWFDNVRIPRENLLNSVADVSPDGQYLSSIKDPDQRFAAFMAPLT 328 (477)
Q Consensus 251 lV~~~~~~~~~~pGv~i~~~~~~~Gl~g~--~~~~i~f~~v~VP~~~ll~~~~~v~~~g~~~~~~~~~~~~~~~~~~~l~ 328 (477)
+||.+ +|||+|..+....|+... +..+|+|+||+||..|+|-. ++.||.+..+.+.
T Consensus 184 LVpM~------TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLG----------------eGrGFEIaQGRLG 241 (392)
T KOG1469|consen 184 LVPMN------TPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLG----------------EGRGFEIAQGRLG 241 (392)
T ss_pred EEecC------CCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeec----------------CCCcceeeccccC
Confidence 99987 899999998889998766 46789999999999998864 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011806 329 SGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQS 408 (477)
Q Consensus 329 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~ 408 (477)
.||+..++-.+|.++++++...+.+..|..||++ |..+..+.+-||+...+++.+|+++.+++..+|.. +
T Consensus 242 PGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~-------l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~---G 311 (392)
T KOG1469|consen 242 PGRIHHCMRLIGLAERALQLMKERALSRIAFGKK-------LVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTL---G 311 (392)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcch-------hhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhh---c
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999864 3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhc
Q 011806 409 NKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 409 ~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~ 475 (477)
.+......+|+|+.+-..+.++++.++|.+||.|...+.++.++|.-++++.+.+|..++++..+++
T Consensus 312 ~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~ 378 (392)
T KOG1469|consen 312 NKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAK 378 (392)
T ss_pred chhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhh
Confidence 5777888999999999999999999999999999999999999999999999999999999988876
No 43
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.90 E-value=6.1e-23 Score=181.13 Aligned_cols=148 Identities=24% Similarity=0.251 Sum_probs=141.1
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHH
Q 011806 317 DQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANY 396 (477)
Q Consensus 317 ~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~ 396 (477)
|+||..+...+..+|+.+++.++|.++.+++.+++|++.|++||++ +.++|.+|++|+++.++++++++++++
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~-------l~~~~~v~~~la~~~~~~~a~~~~~~~ 73 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKP-------LAEHPAVRRRLADMAARLEAMRALVYR 73 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEE-------GGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-------ccchhhhHHHHHhhccchhhhhccccc
Confidence 4799999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccHHHHHHHhhcC
Q 011806 397 LKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDNNVLMQQVLLS 476 (477)
Q Consensus 397 ~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~~vl~~~va~~ 476 (477)
++..+++. ......++++|.++++.+.++++.|++++|+.||..++++++++||+++..+++|++++++..|||.
T Consensus 74 ~~~~~~~~-----~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~ 148 (150)
T PF00441_consen 74 AARRLDAG-----QNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARR 148 (150)
T ss_dssp HHHHHHTT-----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHH
T ss_pred cccccccc-----cccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHH
Confidence 99999873 3337888999999999999999999999999999999999999999999999999999999999974
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.90 E-value=3.1e-22 Score=206.73 Aligned_cols=235 Identities=14% Similarity=0.063 Sum_probs=189.7
Q ss_pred HHHhhhhhcccceEEEEEccCCCCC-----CCCCC--CeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEE
Q 011806 165 HEKWLRDTENYVVLGCFAMTELGHG-----SNVRG--IETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQ 237 (477)
Q Consensus 165 ~~~~l~~i~~g~~~~~~a~tE~~~G-----sd~~~--~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~ 237 (477)
-.+|+..+...++..+.+++.|..- +.... +-...+.. +++||+|| |.|.|+|++ . ||+++|+++
T Consensus 129 ~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~-~~dGiVV~-----GaK~~~T~~-~-ad~~~V~~~ 200 (477)
T TIGR02309 129 VRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQ-TDKGVIVR-----GARMTATFP-I-ADEILIFPS 200 (477)
T ss_pred HHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEE-cCCCEEEe-----CHHHhhhhc-c-cceEEEecc
Confidence 4568888899999999999998531 11111 22233332 35899999 999999996 6 999999999
Q ss_pred eeeCCCc-Cc--eEEEEEEeeCCCCCCCCCeEEccCCCccccCcc-----------cceeEEecceecCcccc--cCCCC
Q 011806 238 LEINGKN-QG--VHAFICQIRDAAGNICPNIRIADCGHKIGLNGV-----------DNGRIWFDNVRIPRENL--LNSVA 301 (477)
Q Consensus 238 ~~~~~~~-~g--~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~g~-----------~~~~i~f~~v~VP~~~l--l~~~~ 301 (477)
+....++ ++ ...|+||.+ +|||++.....++|.++. ..+.|.||||+||.+++ +|.
T Consensus 201 ~~~~~~~~~~~ya~~F~VP~d------tpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~-- 272 (477)
T TIGR02309 201 TVLKAGAEKDPYALAFAIPTN------TPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGD-- 272 (477)
T ss_pred CCCCCccCCCCeEEEEEeeCC------CCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCC--
Confidence 8654332 33 689999986 899999887788888876 66999999999999999 774
Q ss_pred CcCCCCcccccCCCc---chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHH
Q 011806 302 DVSPDGQYLSSIKDP---DQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQR 378 (477)
Q Consensus 302 ~v~~~g~~~~~~~~~---~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~ 378 (477)
+ +.+|..... ++..+..++|.+.++++.++.|+.. .+||.+ +.++|.+|.
T Consensus 273 --------------~e~a~~~f~~~~~-----~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~g-------i~~~q~VQ~ 325 (477)
T TIGR02309 273 --------------VELCNNAYAATGA-----VNHMAHQVVALKIAKTEAFLGVAAL-MAEGIG-------ADGFQHVQE 325 (477)
T ss_pred --------------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhC-------cccchHHHH
Confidence 4 566654432 3666888999999999999999999 999998 999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCch--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 011806 379 RLLPLLAKSYAASCAANYLKMMYVNRTPQSNK--TIHVVSSAFKAILTWHNMRTLQECREACGGQGLKT 445 (477)
Q Consensus 379 ~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~ 445 (477)
+|++|.+.++++++++++++...+... .+. .....++++|.++++...++. +|+|++||.|+..
T Consensus 326 kLAEm~~~~Ea~ral~~aAa~~~~~~~--~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 326 KIAEIIVYLEAMKAFWTRAEEEAKENA--YGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCC--CCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 999999999999999999998776521 112 246788999999999999995 9999999999974
No 45
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.58 E-value=1.2e-14 Score=125.82 Aligned_cols=128 Identities=16% Similarity=0.023 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc--cCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Q 011806 332 VIIAGSSVYKAKIGLAIAIRYSLSRRA--FSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQ-- 407 (477)
Q Consensus 332 ~~~aa~~~G~a~~al~~a~~ya~~R~q--fg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~-- 407 (477)
+.+++.++|+++++++.++++++.|.. .+.+ +.+.|.+|.+|+++.+.+++++.+++++++.+++....
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~-------~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~ 73 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAP-------LADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGE 73 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSB-------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc-------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 467899999999999999999999876 4444 99999999999999999999999999999997642211
Q ss_pred -CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCchHHhhhcccccccccccH
Q 011806 408 -SNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRVGHLKGEFDVQLTFEGDN 466 (477)
Q Consensus 408 -~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~~~~l~r~~rda~~~~~~~G~~ 466 (477)
...+........|.++.+.+.++++.+++++||.++...+|++|+|||+++...+...|
T Consensus 74 ~~~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 74 ELTPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 13456677788899999999999999999999999999999999999999988776543
No 46
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.58 E-value=8.7e-16 Score=128.67 Aligned_cols=110 Identities=21% Similarity=0.210 Sum_probs=97.6
Q ss_pred CCCcHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCccccccccccch---HHHHHHH
Q 011806 53 DGHNLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNVFEGWLTAKGAE---AELRKLA 129 (477)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~Gg---~~~~~~~ 129 (477)
+++++++++++++|++++ +.|.. ..+|+.+.+|.++|+++.+.||+++.+|+++|| +....+.
T Consensus 1 t~~~~~l~~~~~~~~~~~-------------~~~~~-~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~ 66 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEE-------------IAPHA-AEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAI 66 (113)
T ss_dssp SHHHHHHHHHHHHHHHHH-------------THHHH-HHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-------------chHHH-HHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHH
Confidence 356789999999999983 55543 566677789999999999999999999999987 7889999
Q ss_pred HHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccc
Q 011806 130 LLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYV 176 (477)
Q Consensus 130 ~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~ 176 (477)
+.+++++.|.++++.+++|.++++..|..+|+++|+++|||++.+|+
T Consensus 67 ~~e~l~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 67 VLEELARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred HHHhhhhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 99999999999999899988788889999999999999999999986
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.47 E-value=7.9e-14 Score=99.24 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=46.1
Q ss_pred EEEccCCCCCCCCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEEe
Q 011806 180 CFAMTELGHGSNVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQL 238 (477)
Q Consensus 180 ~~a~tE~~~Gsd~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~~ 238 (477)
||++|||++|+|+..++|+|++++ ++|+|| |+|+||+++.. ||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~--~~~~L~-----G~K~~v~~~~~-a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDG--DGYVLN-----GEKRFVSNAPD-ADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEET--TEEEEE-----EEEEEEETTTT-ESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeeccc--ceEEEe-----eEEEEECCcCc-cCEEEEEEEE
Confidence 789999999999999999999997 889999 99999999997 9999999997
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.83 E-value=1.2e-06 Score=90.94 Aligned_cols=239 Identities=10% Similarity=0.107 Sum_probs=140.2
Q ss_pred HHHHhhhhhcccceEEEEEccCCCCC-C----CCCCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEE-EEE
Q 011806 164 HHEKWLRDTENYVVLGCFAMTELGHG-S----NVRGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIV-FSQ 237 (477)
Q Consensus 164 q~~~~l~~i~~g~~~~~~a~tE~~~G-s----d~~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v-~A~ 237 (477)
--.+|+..+.+.++..+.+++.|..- | ....+-...+.. .++|-+|+ |.|...|+++. +|.++| ...
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee-~~dGIVVr-----GAK~~aT~a~~-a~ei~V~~~~ 209 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEE-RDDGIVVS-----GAKVVATNSAL-THYNFIGFGS 209 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEE-cCCcEEEe-----CHHHHhcccch-hcceeeccCc
Confidence 34578888899999999999988531 1 112222233332 34899999 99999999998 998888 444
Q ss_pred eeeCCCcCc-eEEEEEEeeCCCCCCCCCeEEccCC-Cccc-------cC-------cccceeEEecceecCcccccCCCC
Q 011806 238 LEINGKNQG-VHAFICQIRDAAGNICPNIRIADCG-HKIG-------LN-------GVDNGRIWFDNVRIPRENLLNSVA 301 (477)
Q Consensus 238 ~~~~~~~~g-~~~flV~~~~~~~~~~pGv~i~~~~-~~~G-------l~-------g~~~~~i~f~~v~VP~~~ll~~~~ 301 (477)
....++++. -..|.||.+ +|||++.-.. ..++ .. +-.-+-+.||||+||-++++-- +
T Consensus 210 ~~~~~~d~dyAvaFavP~d------tpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~-g 282 (519)
T TIGR02310 210 AQIIGDNDDFALMFIAPMD------AEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIY-R 282 (519)
T ss_pred ccccCCCCCeEEEEEeEcC------CCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceec-C
Confidence 311112333 356999986 7999974211 1100 00 1123568999999999999852 1
Q ss_pred CcCCCCcccccCCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhH
Q 011806 302 DVSPDGQYLSSIKDPDQRFAAFMAPLTSGRVIIAGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLL 381 (477)
Q Consensus 302 ~v~~~g~~~~~~~~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La 381 (477)
++..-+.+- ...++...+ .|-... ..++.++-.+-.+..-+. +-| +..++.||.+|+
T Consensus 283 d~e~~~~~~-----~~~~~~~~~-----~~q~~~-r~~~k~dfl~G~a~~~ae---~~G---------~~~~~hVqekl~ 339 (519)
T TIGR02310 283 DFERCRTWA-----QYGGFARLF-----PMQACT-RLAVKLDFITGLLHKALQ---CTG---------VLEFRGVQAQMG 339 (519)
T ss_pred CHHHHHhHH-----HhhhHHHHH-----HHHHHH-HHHHHHHHHHHHHHHHHH---HhC---------cccchHHHHHHH
Confidence 100000000 001111111 111111 222222222222222111 123 788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011806 382 PLLAKSYAASCAANYLKMMYVNRTPQSN-KTIHVVSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 382 ~~~~~~~a~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
++....+.++++...+...-.. .+.+. .........+|.+..+.-.++.+.+.+.+||
T Consensus 340 Eli~~~E~~~a~~~Aa~~~~~~-~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 340 EVVAWRNLFWTLTDAMAGSAYQ-WKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred HHHHHHHHHHHHHHHHHhcCcc-CCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 9999999999888765533221 11111 2344566789999999999999999876654
No 49
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=5.5e-07 Score=90.56 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=146.5
Q ss_pred HHHhhhhhcccceEEEEEccCCCCC-----CCCC--CCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEE-E
Q 011806 165 HEKWLRDTENYVVLGCFAMTELGHG-----SNVR--GIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVF-S 236 (477)
Q Consensus 165 ~~~~l~~i~~g~~~~~~a~tE~~~G-----sd~~--~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~-A 236 (477)
-.+|+..+...++..+-|+|.|..- +-.. .+-...+.. .++|-+|. |-|..+||++. +|..+|+ .
T Consensus 133 ~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee-~~dGIVVr-----GAK~~aT~~a~-tdei~V~Pt 205 (493)
T COG2368 133 AREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEE-TEDGIVVR-----GAKALATGSAL-TDEIFVLPT 205 (493)
T ss_pred HHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEE-ecCceEEE-----ChHHHhccccc-cceEEEeec
Confidence 4568899999999999999998531 2222 233333332 24899999 99999999998 9999987 4
Q ss_pred EeeeCCCcCceEEEEEEeeCCCCCCCCCeEEccC---CCccccCccc------------ceeEEecceecCcccccCCCC
Q 011806 237 QLEINGKNQGVHAFICQIRDAAGNICPNIRIADC---GHKIGLNGVD------------NGRIWFDNVRIPRENLLNSVA 301 (477)
Q Consensus 237 ~~~~~~~~~g~~~flV~~~~~~~~~~pGv~i~~~---~~~~Gl~g~~------------~~~i~f~~v~VP~~~ll~~~~ 301 (477)
+.-..++.+=-..|.+|.+ +|||.+.-. ...-|+.+.+ -+-|.||||+||-++++-- .
T Consensus 206 ~~~~~~d~dfAv~FaiP~d------t~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y-~ 278 (493)
T COG2368 206 RSMQEDDKDFAVAFAIPMD------TEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIY-R 278 (493)
T ss_pred cccCCCCCceEEEEEcccC------CCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeee-c
Confidence 4432221122457999986 799886221 1112222222 2338999999999998852 1
Q ss_pred CcCCCCcccccCCCcc--hHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhccccCCCCCCCcccccc
Q 011806 302 DVSPDGQYLSSIKDPD--QRFAAFMAPLTSGRVIIAGS-------SVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLD 372 (477)
Q Consensus 302 ~v~~~g~~~~~~~~~~--~~~~~~~~~l~~~r~~~aa~-------~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~ 372 (477)
+ .. ..+..........|...+.. .+|+++.+++ + -| +.+
T Consensus 279 d-------------~~~~~~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~----~------~G---------v~~ 326 (493)
T COG2368 279 D-------------LERAYAWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAE----T------NG---------VEE 326 (493)
T ss_pred c-------------HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH----h------hC---------ccc
Confidence 1 22 11111111111222222222 2233322222 2 13 789
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 011806 373 YPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGL 443 (477)
Q Consensus 373 ~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~ 443 (477)
++.||.+|++|.+..+.+.++...++..-.......--.....+...|.++...-.++.....++.||.-.
T Consensus 327 ~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i 397 (493)
T COG2368 327 FRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGII 397 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCcee
Confidence 99999999999999999999988777654432111113456677889999999999999999999877443
No 50
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=98.33 E-value=1.7e-06 Score=73.66 Aligned_cols=119 Identities=21% Similarity=0.346 Sum_probs=72.6
Q ss_pred CHHHHhhhcCCCc--HHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHH----cCccccccc
Q 011806 44 DLKEMRKLLDGHN--LQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLE----RNVFEGWLT 117 (477)
Q Consensus 44 ~~~~m~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~----~Gl~~~~~p 117 (477)
|+++|+.+|++.. .+.|+++.+++.++|.|... .|.+..+.++..+...+....+.+ .++..-.
T Consensus 1 dv~eLt~~l~Gg~~~~~~rr~i~~~i~~dP~f~~~--------~~~~~lsr~e~~~~~~~k~~~l~~~~~~~~~~~~~-- 70 (125)
T PF14749_consen 1 DVEELTNFLDGGEEKLERRREIESLIESDPIFSKP--------PDRYFLSREERYERALRKARRLIKLLKQLGWDDNQ-- 70 (125)
T ss_dssp -HHHHHHHHHSSHHHHHHHHHHHHHHHT-GGG-----------TTGGGS-HHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHhhChhhhcC--------CCcccCCHHHHHHHHHHHHHHHHHHHHHhCccccc--
Confidence 6899999999965 47799999999999999762 355667888777766655555443 3332100
Q ss_pred cccchHHHHHHHHHHHHhcccccchhhHhhhhhhHHHHHhccCCHHHHHHhhhhhcccceE
Q 011806 118 AKGAEAELRKLALLEVTGIFDHSLAIKIGVHFFLWGGAIQFFGTQRHHEKWLRDTENYVVL 178 (477)
Q Consensus 118 ~~~Gg~~~~~~~~~e~la~~~~s~~~~~~~h~~l~~~~i~~~gt~~q~~~~l~~i~~g~~~ 178 (477)
+..+. .....+.....+-+..+++|+++|.++|...||+||+++|+|++.+.+++
T Consensus 71 -----~~~~~-~~~~~~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 71 -----DPDDA-FMIGLLMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp -----SHHHH-HHH--HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred -----CHHHH-HHHHHHHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 11111 11111122222223345689999999999999999999999999887764
No 51
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.47 E-value=0.00087 Score=64.00 Aligned_cols=121 Identities=14% Similarity=0.193 Sum_probs=73.0
Q ss_pred HHHHhhhhhcccceEEEEEccCCCC--CCCC----CCCeeEEEEeCCCCeEEEecCCCCceeeeecCccccccEEEEEEE
Q 011806 164 HHEKWLRDTENYVVLGCFAMTELGH--GSNV----RGIETVTTYDANTGEFIINTPCESAQKYWIGGAANHATHTIVFSQ 237 (477)
Q Consensus 164 q~~~~l~~i~~g~~~~~~a~tE~~~--Gsd~----~~~~t~A~~~~~~~~~ilntp~~~G~K~~is~a~~~A~~~~v~A~ 237 (477)
--.+|+..+...++..+.+++.|.. +... ..+-...+.. ..+|-+|+ |-|...|+++. +|.++|+--
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~a~~-adei~V~p~ 196 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATGAPY-ADEILVFPT 196 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEETGCC-SSEEEE--S
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcCCcc-cccEEEeec
Confidence 3456888888999999999999962 1111 1133333333 24899999 99999999998 999999754
Q ss_pred eeeCCCcC-ceEEEEEEeeCCCCCCCCCeEEccCCCccccC--cc----------cceeEEecceecCccccc
Q 011806 238 LEINGKNQ-GVHAFICQIRDAAGNICPNIRIADCGHKIGLN--GV----------DNGRIWFDNVRIPRENLL 297 (477)
Q Consensus 238 ~~~~~~~~-g~~~flV~~~~~~~~~~pGv~i~~~~~~~Gl~--g~----------~~~~i~f~~v~VP~~~ll 297 (477)
..-..+++ =-..|.||.+ +||+++.-.......+ .. .-+-|.||||+||-++++
T Consensus 197 ~~~~~~d~dyAv~FavP~~------tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 197 RAMRPGDEDYAVAFAVPMN------TPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSTTCCGGG-EEEEEETT-------TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred cCCCCCCCceEEEEEccCC------CCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 33222222 2467999976 7999874321111111 11 235689999999999875
No 52
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=92.25 E-value=3.2 Score=38.38 Aligned_cols=75 Identities=13% Similarity=0.058 Sum_probs=56.8
Q ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 011806 370 LLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSN-KTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKT 445 (477)
Q Consensus 370 i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg~G~~~ 445 (477)
+.+++.||.+|+++...++.+++++..+...-.. .+.+. .........+|.+..+.-.++++.+.+++||.=.+.
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~-~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~ 119 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEAEP-DPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITL 119 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE--TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC-
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-CCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 8889999999999999999999998855543322 11111 334556788999999999999999999999876653
No 53
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=90.38 E-value=2.9 Score=44.39 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 011806 344 IGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAIL 423 (477)
Q Consensus 344 ~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a 423 (477)
.-|..+++|...|. |+. |.+.|.+..||+++.+.+|++-+.+-++-..+.+. ......+...+++||
T Consensus 416 ~~~~~~v~~~~~~~--~~~-------i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~----~~~~~~e~~la~~fc 482 (520)
T PTZ00457 416 VAFGNAVEATFVRS--GSQ-------VPYQQLLLNRLGEAASLLYAASAVASRASMCVSKG----LPSAKVEGELASAFI 482 (520)
T ss_pred HHHHHHHHHHHHHH--HhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHH
Confidence 33445555555554 455 99999999999999999999999999998887764 223333456899999
Q ss_pred HHHHHHHHHHHHHHhccccccCcC
Q 011806 424 TWHNMRTLQECREACGGQGLKTEN 447 (477)
Q Consensus 424 ~~~a~~~~~~~~~~~Gg~G~~~~~ 447 (477)
.+...++-..+-+++.. ++..+.
T Consensus 483 ~~a~~rv~~~~~~~~~~-~~~~~~ 505 (520)
T PTZ00457 483 AMAVSRARQLSEESCNV-GKTADD 505 (520)
T ss_pred HHHHHHHHHHHHHHhcc-CccchH
Confidence 99999999989899987 665533
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.43 E-value=8 Score=40.82 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Q 011806 335 AGSSVYKAKIGLAIAIRYSLSRRAFSITPNGPEVLLLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHV 414 (477)
Q Consensus 335 aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~ 414 (477)
++..+=.+-..+..+++-...+ +|+. |.+.|.+-+|||+..+.+|++-+.+.++-+.+... ......
T Consensus 511 saq~~e~~~~~~~~~Ve~ll~k--~~k~-------iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~ig----l~~aDh 577 (634)
T KOG0137|consen 511 SAQKLESSLARFQQVVEKLLTK--HGKG-------IVEEQSVLQRLANVAINIYAMVAVISRASRSYSIG----LPNADH 577 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hccc-------hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcC----CcchhH
Confidence 3334434444444444444444 3556 99999999999999999999999999999998763 345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011806 415 VSSAFKAILTWHNMRTLQECREACGG 440 (477)
Q Consensus 415 ~~~~~K~~a~~~a~~~~~~~~~~~Gg 440 (477)
+...++++|++....+...+-++-++
T Consensus 578 El~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 578 ELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77788889998888888877777666
No 55
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=41.21 E-value=89 Score=22.37 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhhCCCCCCccCCCccccCCcccCCHHHHHHHHHHHHHHHHHcCc
Q 011806 56 NLQERDWLFNLMVQSKLFNPRKRGEKVYVAPDYNQTMEQQREMTMKRISYLLERNV 111 (477)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gl 111 (477)
.+.|.+.++.|++.| ..||+.|-+...+--.|.+.|.
T Consensus 7 Pe~L~~~m~~fie~h-------------------P~WDQ~Rl~~aALa~FL~QnG~ 43 (57)
T PF10929_consen 7 PEDLHQAMKDFIETH-------------------PNWDQYRLFQAALAGFLLQNGC 43 (57)
T ss_pred cHHHHHHHHHHHHcC-------------------CCchHHHHHHHHHHHHHHHcCc
Confidence 457899999999997 4688989888888788888773
No 56
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=27.98 E-value=4.6e+02 Score=29.57 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCcCc
Q 011806 370 LLDYPSHQRRLLPLLAKSYAASCAANYLKMMYVNRTPQSNKTIHVVSSAFKAILTWHNMRTLQECREACGG-QGLKTENR 448 (477)
Q Consensus 370 i~~~~~~q~~La~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~K~~a~~~a~~~~~~~~~~~Gg-~G~~~~~~ 448 (477)
|...|.+..||+++.+.+|++.+.+.+.- ++. .... . ...+.|.+.++...+.+.+-+ ..=.....
T Consensus 563 l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~----~~~~--~----~~l~~~~~~~~~~~~~~~~~~~~~n~p~~~ 629 (777)
T PRK09463 563 LKRRERLSARLGDILSQLYLASAVLKRYE---DEG----RPEA--D----LPLVHWAVQDALYQAEQALDGLLRNFPNRV 629 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCC----Cchh--H----HHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 88999999999999999999998877665 221 1111 1 233444555555555444322 12222233
Q ss_pred hHHhhhccc--ccccccccHHHHHHHhhc
Q 011806 449 VGHLKGEFD--VQLTFEGDNNVLMQQVLL 475 (477)
Q Consensus 449 l~r~~rda~--~~~~~~G~~~vl~~~va~ 475 (477)
+...+|-.- ....+.+.++.+..+||+
T Consensus 630 ~~~~~~~~~~p~g~~~~~p~d~~~~~~~~ 658 (777)
T PRK09463 630 VAGLLRVLVFPLGRRYRAPSDKLDHQVAK 658 (777)
T ss_pred HHHHHHHeeeCCCCCCCCCCHHHHHHHHH
Confidence 444444332 123566777777777765
Done!