Citrus Sinensis ID: 011807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
Protein Sequence
MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNHSSSSLFPFTTTHIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPPPLSSSQYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSATAAQQVHQSMGHHMTTTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDFHPFERGRTLLRPQGFGFAEPAESETWGDC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEccccccccHHHHHHHHHccccccccccccccccccccEEEccccccccccHHHHHccccccHEHEEEcccccccccccccccEccHcHHHHHHHccccccEEcccccEEcccccHHHHHHHcccccccHHcccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHEEEEcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfppaagaaisnstslseeaasvssgtrvqdfgglnliastispqqqsqkakkkrslpgnpdpdaevialspktllATNRFVCEVCnkgfqrdqnlqlhrrghnlpwklkqrsnkdiikkkayvcpepscvhhhpsralgdltgiKKHFCrkhgerkwkcekcskvYAVQSDwkahsktcgtreyrcdcgtlfsrkdsfiTHRAFCDALAEESARLSANQLATTintnghplhiasqnhsssslfpfttthialtpwdppqnpnpnrnnpnndphpnplyiksethhfqippplsssqyfqepqAVAATTKALitspyqdlhmrtqpslnasatsaHHMSATALLQKAATVGSATAAQQVHQSmghhmtttqlnmgelaafnsvshispdaylgftsgnlstwqksdrLTRDflgltgdghgdenvngganagVNVRNALtytagldfhpfergrtllrpqgfgfaepaesetwgdc
Flexible Loop (DISEMBL)
mfppaagaaisnstslseEAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGfqrdqnlqlhrrghnlpwklkqrsnKDIIKKKAYVCPEpscvhhhpsralgdltGIKKHFCRKhgerkwkcekcskvyavqsdwkahsktcgtreyrcDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNHSSSSLFPFTTTHIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPPPLSSSQYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSATAAQQVHQSMGHHMTTTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDFHPFERGRTLLRPQGfgfaepaesetwgdc
Low Complexity Region (SEG)
MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPqqqsqkakkkRSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNHSSSSLFPFTTTHIALTPWDppqnpnpnrnnpnndphpnpLYIKSETHHFQIPPPLSSSQYFQEPQAVAATTKALITSPYQDLHMRTQPSLNasatsahhmsataLLQKAATVGSATAAQQVHQSMGHHMTTTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFLGLTGDGHGDEnvngganagvnvrnaLTYTAGLDFHPFERGRTLLRPQGFGFAEPAESETWGDC
Disordered region (IsUnstruct)
******************************************************************VIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINT****************LFPFTTTHIALT********************************************************************************************************************QLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDFHPFERGRTLLRPQGFG*************
Disordered Region (DISOPRED)
*FPPAAG*******************************************************PDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRS****IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARL*****************************************************************************************************************************************************************************************************LGLTG********************************************FGFAEPAE***WGD*
Disordered Region (DISEMBL)
***************************RVQDFGGLNLIASTI******************PDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNHSSSSLFPFTTTHIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPPPLSSSQYFQEPQAVAATTKALITSPYQDLHMRTQPSL*********MSATALLQK********************MTTTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDFHPFERGRTLLRPQGFGFA***********
Disordered Region (DISPRO)
*****AGA*********************************************KRSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTI***************************************************************************************************************************ATVGS****************TTQLNMGELAAFNSVSHISPDAYLGFTS**********RLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDFHPFERGRTLLRPQGFGFAEPAESET***C
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNHSSSSLFPFTTTHIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPPPLSSSQYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSATAAQQVHQSMGHHMTTTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDFHPFERGRTLLRPQGFGFAEPAESETWGDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	477	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.350	0.330	0.857	3e-90
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.670	0.686	0.520	9e-89
Q700D2	503	Zinc finger protein JACKD	no	no	0.379	0.359	0.783	2e-87
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.303	0.290	0.335	1e-19
Q943I6	522	Zinc finger protein STOP1	no	no	0.291	0.266	0.346	3e-19
Q2QX40	465	Zinc finger protein STAR3	no	no	0.291	0.298	0.326	1e-17
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.291	0.458	0.366	3e-16
O43313	823	ATM interactor OS=Homo sa	yes	no	0.299	0.173	0.307	9e-11
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.251	0.146	0.299	1e-09
Q5RER9	617	Zinc finger protein 813 O	yes	no	0.362	0.280	0.262	4e-08

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  332 bits (852), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 144/168 (85%), Positives = 162/168 (96%), Gaps = 1/168 (0%)

Query: 51  AKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLK 110
            KKKR+LPGNPDP+AEVIALSPKTL+ATNRF+CE+C KGFQRDQNLQLHRRGHNLPWKLK
Sbjct: 40  VKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLK 99

Query: 111 QRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQ 170
           QR++K++ +K+ YVCPE SCVHHHP+RALGDLTGIKKHFCRKHGE+KWKCEKC+K YAVQ
Sbjct: 100 QRTSKEV-RKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQ 158

Query: 171 SDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSA 218
           SDWKAHSKTCGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+ARL+A
Sbjct: 159 SDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNA 206

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  327 bits (839), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 189/363 (52%), Positives = 233/363 (64%), Gaps = 43/363 (11%)

Query: 17  SEEAASVSSGT---RVQDFGGLNLIASTISPQQQSQKAKKKRSLPGNPDPDAEVIALSPK 73
           SE   ++SSG+   + Q    L+   S I+P       KKKR+LPGNPDP+AEVIALSP 
Sbjct: 3   SEVLQTISSGSGFAQPQSSSTLDHDESLINPPL----VKKKRNLPGNPDPEAEVIALSPT 58

Query: 74  TLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHH 133
           TL+ATNRF+CEVC KGFQRDQNLQLHRRGHNLPWKLKQR++K++ +K+ YVCPE +CVHH
Sbjct: 59  TLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKTCVHH 117

Query: 134 HPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLF 193
           H SRALGDLTGIKKHFCRKHGE+KW CEKC+K YAVQSDWKAHSKTCGTREYRCDCGT+F
Sbjct: 118 HSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIF 177

Query: 194 SRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHI-ASQNHSSSSLFPFTTTHI 252
           SR+DSFITHRAFCDALAEE+A+++A      +   G P  +  +  +   +  P      
Sbjct: 178 SRRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAPGSVNLNYQYLMGTFIP------ 231

Query: 253 ALTPWDPPQNPNPNRNNPNNDPHPN---PLYIKSETHHFQIPPPLSSSQY---FQEPQAV 306
            L P+ P    NPN ++ +  P  +    L++  +     I PP     Y   F   +A 
Sbjct: 232 PLQPFVPQPQTNPNHHHQHFQPPTSSSLSLWMGQD-----IAPPQPQPDYDWVFGNAKAA 286

Query: 307 AATTKALITSPYQ----------DLHMRTQPSL-------NASATSAHHMSATALLQKAA 349
           +A      T   Q               + PSL       NA+A S  +MSATALLQKAA
Sbjct: 287 SACIDNNNTHDEQITQNANASLTTTTTLSAPSLFSSDQPQNANANSNVNMSATALLQKAA 346

Query: 350 TVG 352
            +G
Sbjct: 347 EIG 349

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  323 bits (829), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 145/185 (78%), Positives = 162/185 (87%), Gaps = 4/185 (2%)

Query: 48  SQKAKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPW 107
           S  AKKKR+ PG PDPDA+VIALSP TL+ATNRFVCE+CNKGFQRDQNLQLHRRGHNLPW
Sbjct: 49  SSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 108

Query: 108 KLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVY 167
           KLKQRS +++IKKK Y+CP  +CVHH  SRALGDLTGIKKH+ RKHGE+KWKCEKCSK Y
Sbjct: 109 KLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKY 168

Query: 168 AVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSA----NQLAT 223
           AVQSDWKAH+KTCGTREY+CDCGTLFSRKDSFITHRAFCDAL EE AR+S+    N + +
Sbjct: 169 AVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVIS 228

Query: 224 TINTN 228
           T N N
Sbjct: 229 TTNLN 233

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 13/158 (8%)

Query: 61  PDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLK---QRSNKDI 117
           P    E++ L  + +LA +   C +C KGF+RD NL++H RGH   +K      + NK+ 
Sbjct: 224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKES 283

Query: 118 IKK------KAYVCPEPSC---VHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC-SKVY 167
           +        K Y CP   C     H   + L  +  +K H+ R H ++ + C +C +K +
Sbjct: 284 VPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKF 343

Query: 168 AVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAF 205
           +V +D K H K CG  ++ C CGT FSRKD    H A 
Sbjct: 344 SVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIAL 381

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 11/150 (7%)

Query: 67  VIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQ---RSNKDIIKKKA- 122
           V+ L  + +LA +   C +C KGF+RD NL++H RGH   +K      + +KD   + A 
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 123 ---YVCPEPSCV---HHHPSRALGDLTGIKKHFCRKHGERKWKCEKC-SKVYAVQSDWKA 175
              Y CP   C     H   + L  +  +K H+ R H ++ + C +C +K ++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 176 HSKTCGTREYRCDCGTLFSRKDSFITHRAF 205
           H K CG  ++ C CGT FSRKD    H A 
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVAL 417

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 14/153 (9%)

Query: 67  VIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWK----------LKQRSNKD 116
           V+ L    +LA +   C +C KGF+RD NL++H RGH   +K            +   + 
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 117 IIKKKAYVCPEPSCVH---HHPSRALGDLTGIKKHFCRKHGERKWKCEKC-SKVYAVQSD 172
              ++ Y CP   C     H   + L  +  +K H+ R H E++  C +C +K ++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 173 WKAHSKTCGTREYRCDCGTLFSRKDSFITHRAF 205
            K H K CG   + C CGT FSRKD    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 74/150 (49%), Gaps = 11/150 (7%)

Query: 65  AEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNL-----PWKLKQRSNKDIIK 119
           A  I    + L+    F C VC K F R  NLQ+H  GH       P  LK    + ++ 
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188

Query: 120 KKAYVCPEPSCVHH--HP-SRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAH 176
              Y C E  C +H  HP S+ L D   ++ H+ RKHG + + C  C K+ AV+ DW+ H
Sbjct: 189 IPCYCCVE-GCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTH 247

Query: 177 SKTCGTREYRCDCGTLFSRKDSFITH-RAF 205
            K CG R + C CG+ F  K S   H +AF
Sbjct: 248 EKNCGKR-WVCVCGSDFKHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 10/153 (6%)

Query: 58  PGNPDPDA-EVIALSPKTLLATNR--FVCEV--CNKGFQRDQNLQLHR-RGHNLPWKLKQ 111
           P  P P A E+I  S   L    R   +C V  C K       L +H  + H L   +  
Sbjct: 58  PAVPAPPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVN 117

Query: 112 RSNKDIIKK--KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAV 169
            + +  +K   K Y CP   C    P R     + +K+HF + H E+K KC KCS  Y  
Sbjct: 118 PTIRKDLKTGPKFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGT 176

Query: 170 QSDWKAHSKTCGTREYRCDCGTLFSRKDSFITH 202
           + D K H++ CG + +RC CG  ++ + +  +H
Sbjct: 177 EWDLKRHAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 7/127 (5%)

Query: 81  FVCEV--CNKGFQRDQNLQLHR-RGHNLPWKLKQRS-NKDIIKK-KAYVCPEPSCVHHHP 135
            +C V  C K       L +H  + H L   +   +  KD+    K Y CP   C    P
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLTTAPKFYCCPIKGC-PRGP 138

Query: 136 SRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSR 195
            R     + +K+HF + H E+K KC KCS  Y  + D K H + CG + ++C CG  ++ 
Sbjct: 139 DRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCPYAS 197

Query: 196 KDSFITH 202
           + +  +H
Sbjct: 198 RTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q5RER9|ZN813_PONAB Zinc finger protein 813 OS=Pongo abelii GN=ZNF813 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 29/202 (14%)

Query: 9   AISNSTSLSE-EAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKKRSLPGNPDPDA-- 65
           +I+N++S+S  +  S    T + +  G N + S +  Q+Q  + ++K S   N    A  
Sbjct: 167 SINNASSISTAQRISCRPKTHISNNYGNNFLNSLLLTQKQEVRMREK-SFQYNESGKAFN 225

Query: 66  --EVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAY 123
              ++       L   ++ C+VC K F R +NL  HRR H                +K Y
Sbjct: 226 YSSLLRKHQIIHLGEKQYKCDVCGKVFNRKRNLACHRRCH--------------TGEKPY 271

Query: 124 VCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT 182
            C E         +       +  H     GE+ +KCE+C K ++ +S+ K H +   G 
Sbjct: 272 RCNE-------CGKTFSQTYSLTCHRRLHTGEKPYKCEECDKAFSFKSNLKRHRRIHAGE 324

Query: 183 REYRC-DCGTLFSRKDSFITHR 203
           + Y+C +CG  FS+  S   HR
Sbjct: 325 KPYKCNECGKTFSQTSSLTCHR 346

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
224082690	469	predicted protein [Populus trichocarpa]	0.926	0.942	0.620	1e-151
359495453	456	PREDICTED: zinc finger protein NUTCRACKE	0.932	0.975	0.643	1e-144
255559851	466	nucleic acid binding protein, putative [	0.937	0.959	0.616	1e-142
356570598	460	PREDICTED: zinc finger protein NUTCRACKE	0.924	0.958	0.580	1e-134
356536786	463	PREDICTED: zinc finger protein NUTCRACKE	0.878	0.904	0.567	1e-132
356503564	472	PREDICTED: zinc finger protein NUTCRACKE	0.939	0.949	0.550	1e-128
356502791	458	PREDICTED: zinc finger protein NUTCRACKE	0.893	0.930	0.562	1e-126
357440593	524	Zinc finger protein-like protein [Medica	0.888	0.809	0.559	1e-124
449458522	520	PREDICTED: zinc finger protein NUTCRACKE	0.832	0.763	0.570	1e-122
449528962	486	PREDICTED: zinc finger protein NUTCRACKE	0.832	0.816	0.568	1e-122

>gi|224082690|ref|XP_002306797.1| predicted protein [Populus trichocarpa] gi|222856246|gb|EEE93793.1| predicted protein [Populus trichocarpa]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 307/495 (62%), Positives = 355/495 (71%), Gaps = 53/495 (10%)

Query: 10  ISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKK----RSLPGNPDPDA 65
           +SNSTSLSEEA SVSSGTRVQ+FG LN +AS  SP Q  Q+ +K     RSLPGNPDPDA
Sbjct: 1   MSNSTSLSEEA-SVSSGTRVQEFGSLNPLASNFSPLQHQQQQQKIIKKKRSLPGNPDPDA 59

Query: 66  EVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVC 125
           EVIALSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQR++K+I KKKAYVC
Sbjct: 60  EVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEI-KKKAYVC 118

Query: 126 PEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREY 185
           PEP+CVHHHPSRALGDLTGIKKH+CRKHGE+KWKCEKCSK+YAVQSDWKAHSKTCGTREY
Sbjct: 119 PEPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREY 178

Query: 186 RCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTI-NTNGHPLHIASQNHSSSSL 244
           RCDCGTLFSRKDSF+THRAFCDALAEESARLSA+QL +T  N     L  A Q H  S  
Sbjct: 179 RCDCGTLFSRKDSFVTHRAFCDALAEESARLSAHQLISTDPNAQALLLQNALQAHPISLF 238

Query: 245 FPFTTTH---IAL-TPWDPPQNPNPNRNNPNNDPHPNPLYIKSETH-HFQIPPPLSSSQY 299
                TH   I+L +PWDPP++ NP+ NN     H NP++IK ETH HFQI         
Sbjct: 239 SAPNPTHQQQISLASPWDPPRHHNPSSNN-----HQNPVHIKPETHNHFQI-----PPLL 288

Query: 300 FQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSATAAQQ 359
            + P     + K L+ S +  L      +   S+ ++HH+SATALLQKAA+VG+A     
Sbjct: 289 QEPPPPALPSHKGLLASTFHSL-----SNAVTSSAASHHLSATALLQKAASVGAAQT--- 340

Query: 360 VHQSMGHHMTTTQLNMGELAA-----FNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFL 414
              S+G H   TQL+MGEL +      NS SH++        S  L+TWQKSDRLTRDFL
Sbjct: 341 ---SVG-HSQMTQLDMGELGSAGQVHVNSASHVAQGPNYNLNS--LATWQKSDRLTRDFL 394

Query: 415 GLTGD-----GHGDENVN---GGANAGVNVRNALTYTAGLDFHP---FERGRTLLRPQ-G 462
           GLTG+     GH   N N   GG NA +NVR  LTYT G+ FH     ER  +LL+P  G
Sbjct: 395 GLTGECEDHHGHAASNSNGSSGGVNASMNVREILTYTGGVGFHQQQYNERDHSLLKPHGG 454

Query: 463 FGFAEPAESETWGDC 477
           FGFA+P+ S+TWGDC
Sbjct: 455 FGFAQPSASKTWGDC 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495453|ref|XP_002274683.2| PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 314/488 (64%), Positives = 351/488 (71%), Gaps = 43/488 (8%)

Query: 1   MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKK-RSLPG 59
           MFP    AA+SNSTSLSEEA SVSSGTRVQDF  LN + S IS QQQ+Q+  KK R+LPG
Sbjct: 1   MFP----AAMSNSTSLSEEA-SVSSGTRVQDFSSLNPVVSGISSQQQNQQKIKKKRNLPG 55

Query: 60  NPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIK 119
           NPDPDAEVIALSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQR++K+I K
Sbjct: 56  NPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEI-K 114

Query: 120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT 179
           KKAYVCPEP+CVHHHPSRALGDLTGIKKHFCRKHGE+KWKCEKCSK+YAVQSDWKAHSKT
Sbjct: 115 KKAYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKT 174

Query: 180 CGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHP------LH 233
           CGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLS    +T    N HP        
Sbjct: 175 CGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSVMN-STNQLLNLHPQNPCSFFP 233

Query: 234 IASQNHSSSSLFPFTTTHIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPPP 293
             S +H     FP   THI+LT WD PQNPNPN  N +       L IK E HH QIP P
Sbjct: 234 AFSTHHQQQQHFPNPPTHISLTSWDSPQNPNPNNPNQSP------LQIKPEIHHLQIPSP 287

Query: 294 LS-SSQYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVG 352
           +S      Q P       K L+TSP+Q+ H+ TQP      TSA H+SATALLQKAATVG
Sbjct: 288 ISPQFFQEQPPPPPPTQQKNLMTSPFQNFHVSTQP------TSA-HLSATALLQKAATVG 340

Query: 353 SATAAQQVHQSMGHHMTTTQLNMGELAAFNSV-SHISPDAYLGFTSGNLSTWQKSDRLTR 411
            ATA      S   HM  ++L+M EL +F  V + ISP+ YLGF SGNLSTWQKSDRLTR
Sbjct: 341 -ATANISFTGSSQSHM--SRLHMAELGSFPHVGAGISPE-YLGFASGNLSTWQKSDRLTR 396

Query: 412 DF--LGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDFHPFERGRTLLRPQGFGFAEPA 469
           DF  L     G      +G  N  VN+R+ L YT G++F P++R  +LL+  GF      
Sbjct: 397 DFLGLTGESGGGSGGGADGAVNVSVNMRDMLQYTGGVEFQPYDRDHSLLKAHGF------ 450

Query: 470 ESETWGDC 477
             ETWGDC
Sbjct: 451 --ETWGDC 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559851|ref|XP_002520944.1| nucleic acid binding protein, putative [Ricinus communis] gi|223539781|gb|EEF41361.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 306/496 (61%), Positives = 359/496 (72%), Gaps = 49/496 (9%)

Query: 1   MFPPAAGAAISNSTSLSEEAASVSSGTRV-QDFGGLNLIASTISPQQQSQKAKKK-RSLP 58
           MFP    AA+SNSTSLSE+A SVSSG RV QDF GLN I STISPQQQ Q+  KK RSLP
Sbjct: 1   MFP----AAMSNSTSLSEDA-SVSSGNRVVQDFCGLNQIVSTISPQQQQQQKIKKKRSLP 55

Query: 59  GNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDII 118
           GNPDPDAEV+ALSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQR++K+I 
Sbjct: 56  GNPDPDAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEI- 114

Query: 119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSK 178
           KK+AYVCPEPSCVHHHPSRALGDLTGIKKH+CRKHGE+KWKCEKCSK+YAVQSDWKAHSK
Sbjct: 115 KKRAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSK 174

Query: 179 TCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQN 238
           TCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSA+QL +T N     L +  QN
Sbjct: 175 TCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSAHQLLST-NPTAQTL-LLQQN 232

Query: 239 HSSSSLFPF--TTTHIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPPPLSS 296
             S SLFP   +       P     + NP+ ++ +N+   NP+ IK ETHHF +PP    
Sbjct: 233 PPSHSLFPLPISHNPWDPPPPPLHHHQNPSNSSSSNNNPSNPVQIKPETHHFHLPP---- 288

Query: 297 SQYFQEPQAVAATTKA----LITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVG 352
             + + P  +  T KA    + +S +Q L      S  A++ S+HH+SATALLQKAATVG
Sbjct: 289 -LFHESPPPLPPTDKATGNLIPSSLFQTL------SHAATSASSHHLSATALLQKAATVG 341

Query: 353 SATAAQQVHQSMGHHMTTTQLNMGELAAFN-----SVSHISPDAYLGFTSGNLSTWQKSD 407
           +        Q+   H   T+L++GEL A +     +       AY+G   GNL+TWQK+D
Sbjct: 342 AT-------QTAAGHSQMTRLDIGELVAVSQAADSARQQQQQAAYMG---GNLATWQKND 391

Query: 408 RLTRDFLGLTGDGHGDENV---NGGANAGVNVRNALTYTAGLDFHPF--ERGRTLLRPQG 462
           RLTRDFLGLTGD H   NV   +GG +  +NVR  LTYT G+    +  +R  +LL+P G
Sbjct: 392 RLTRDFLGLTGD-HSSGNVANGSGGVSVSMNVREMLTYTWGVGMQHYNSDRDHSLLKPHG 450

Query: 463 FGFAE-PAESETWGDC 477
           FGF + PA SETWGDC
Sbjct: 451 FGFGQPPAASETWGDC 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570598|ref|XP_003553472.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 288/496 (58%), Positives = 332/496 (66%), Gaps = 55/496 (11%)

Query: 1   MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKK--RSLP 58
           MFP     AISNSTSLSE+A SVSSGT+VQD GGLN   S ISPQQQ Q  K K  RSLP
Sbjct: 1   MFP----TAISNSTSLSEDA-SVSSGTKVQDLGGLNPWVSNISPQQQQQPQKIKKKRSLP 55

Query: 59  GNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDII 118
           GNPDPDAEVIALSPKTLLATNRFVCE+C+KGFQRDQNLQLHRRGHNLPWKLKQRS+K++ 
Sbjct: 56  GNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSSKEV- 114

Query: 119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSK 178
           KKKAYVCPEPSCVHH PSRALGDLTGIKKHFCRKHGE+KWKCEKCSK+YAVQSDWKAHSK
Sbjct: 115 KKKAYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSK 174

Query: 179 TCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHP---LHIA 235
           TCGTREYRCDCG LFSRKDSFITHRAFCDALAEESARLSANQLA    T  +P   LH+ 
Sbjct: 175 TCGTREYRCDCGILFSRKDSFITHRAFCDALAEESARLSANQLAAVATTTSNPFQSLHLF 234

Query: 236 SQNHSSSSLFPFTTTHIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPPPLS 295
                +      ++       WD  Q  NP   NP N      L+IK E+  F   P LS
Sbjct: 235 QTQQQNFQNHQISS----FNQWDSSQE-NP---NPTNIIATTSLHIKPESQTFH-NPTLS 285

Query: 296 SSQYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSAT 355
           S    Q+P       K +I S + +LH+ TQ    ASATSA +MSATALLQKAATVG+A 
Sbjct: 286 SLLQQQQP----TNNKGMIASTFGNLHVATQ----ASATSA-YMSATALLQKAATVGAAA 336

Query: 356 AAQQVH---------QSMGHHMTTTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKS 406
               V            + HH+ + +  +G ++  + V  +  + Y       + T  K 
Sbjct: 337 ITGPVGPQQRVTGHVNHVTHHLGSGEFGIGTVSQLDPVVAVPDNNY-------MRTTFKG 389

Query: 407 DRLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDF---HPFERGRTLLRP-QG 462
           DRLTRDFLGLT D  G     G  +   NV++ LT+  G+++   H       LL+P QG
Sbjct: 390 DRLTRDFLGLTADATG-----GAVDVSTNVKDMLTFAGGVEYHQPHRQHHHHALLKPQQG 444

Query: 463 FGFAEPAES-ETWGDC 477
           FGF   A + ETWG+C
Sbjct: 445 FGFLGTATAPETWGNC 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536786|ref|XP_003536915.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 295/520 (56%), Positives = 340/520 (65%), Gaps = 101/520 (19%)

Query: 1   MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLN-LIASTISPQQQSQKAKKKRSLPG 59
           MFP    A +SNS S SEEA +VS GTR+    GLN ++ +TISPQQ  QK KKKR+LPG
Sbjct: 1   MFP----AVMSNSNSWSEEA-TVSCGTRIT---GLNHVVTTTISPQQ-PQKIKKKRNLPG 51

Query: 60  NPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIK 119
           NPDPDAEVIALSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKD+ K
Sbjct: 52  NPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDV-K 110

Query: 120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT 179
           KKAYVCPEPSCVHH+PSRALGDLTGIKKH+CRKHGE+KWKCEKCSK+YAVQSDWKAHSKT
Sbjct: 111 KKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKT 170

Query: 180 CGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNH 239
           CGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAT   TN  PL       
Sbjct: 171 CGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATNTTTN--PL------- 221

Query: 240 SSSSLFPFTTTH-------IALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPP 292
              SLF   T           + PWDP  NP+      NN+       IK E+H+F IP 
Sbjct: 222 -VHSLFLLPTQQRNNNNNINFINPWDPNPNPSNLTTLHNNN-------IKPESHNFHIPN 273

Query: 293 PLSSS---------QYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATA 343
             +++          + Q+P       K +ITSPY+DLH+RTQP  NA ATSA H+SATA
Sbjct: 274 TSTNNNNNISSSLLHHHQQPN------KRIITSPYRDLHVRTQPHSNA-ATSA-HLSATA 325

Query: 344 LLQKAATVGSATAAQQVHQSMGHHMTTTQLNMGELAA----FNSVSHISP----DAYL-- 393
           LLQKAATVG+A                TQL+M EL A     +SV    P      Y+  
Sbjct: 326 LLQKAATVGAAAITGPT--------LMTQLSMAELGAVTTQLDSVPMTVPLPPDQRYMNM 377

Query: 394 -GFTSGNLSTWQKSDRLTRDFLGLTGDGHGDENVNGGA-NAGVNVRNALTYTAG-LDF-- 448
            G  + N      +D LTRDFLGLT         NG A +  ++V++ LT+TAG +++  
Sbjct: 378 RGLKNNN------NDGLTRDFLGLT---------NGSAVDVSIDVKDMLTFTAGSIEYNH 422

Query: 449 ---------HPFERGRTLLRP-QGFGF-AEPAESETWGDC 477
                    H       L +P QGFGF       E+WG+C
Sbjct: 423 RHQQQQSYEHHHSHNNLLFKPQQGFGFLGTTTGPESWGNC 462

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503564|ref|XP_003520577.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 276/501 (55%), Positives = 332/501 (66%), Gaps = 53/501 (10%)

Query: 1   MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKKRSLPGN 60
           MFP     AIS STSLSE+A SVSSGT+VQD GGLN   S+ISPQQQ QK KKKRSLPGN
Sbjct: 1   MFP----TAISYSTSLSEDA-SVSSGTKVQDLGGLNHGVSSISPQQQPQKIKKKRSLPGN 55

Query: 61  PDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKK 120
           PDPDAEVIALSPKTL+ATNRFVCE+C+KGF RDQNLQLH+RGHNLPWKLKQRS+K++ KK
Sbjct: 56  PDPDAEVIALSPKTLMATNRFVCEICHKGFPRDQNLQLHKRGHNLPWKLKQRSSKEV-KK 114

Query: 121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTC 180
           KAYVCPEPSCVHH+PSRALGDLTGIKKHFCRKHGE+KWKCEKCSK+YAVQSDWKAHSKTC
Sbjct: 115 KAYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTC 174

Query: 181 GTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNHS 240
           GTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLA             +  + 
Sbjct: 175 GTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAAAAAAT----VTTTTTNP 230

Query: 241 SSSLFPFTTTH--------IALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPP 292
             SL+ F T           +   WD  Q  NP   NP+N+     L+IK E+  F  P 
Sbjct: 231 FQSLYLFQTLQQNFQNHQMTSFNQWDSSQE-NP---NPSNNIATTSLHIKPESQSFHNPT 286

Query: 293 PLSSSQYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVG 352
             S  Q  Q+ Q      + +I SP+ +LH+       A+  ++ +MSATALLQKAATVG
Sbjct: 287 LSSFLQQQQQGQQPNNNNRGMIASPFGNLHVAA-----AAPATSSYMSATALLQKAATVG 341

Query: 353 SATAA--------QQVHQSMGHHMTTTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQ 404
           +A           Q+V   + HH+   +  +G ++  + V  + PD      +   + ++
Sbjct: 342 AAAITGPVPVGPQQRVRGHVAHHLGAGEFGIGTVSQLDPVVLV-PDN----NNYTRTMFK 396

Query: 405 KSDRLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDF------HPFERGRTLL 458
            SDRLTRDFLGLT D +G     G  +   NV++ L +T  +++              LL
Sbjct: 397 SSDRLTRDFLGLTADANG-----GAVDVSTNVKDMLAFTGAVEYHQVQPHRQHHHHHALL 451

Query: 459 RP-QGFGFAEPAES-ETWGDC 477
           +P QGFGF     + ETW +C
Sbjct: 452 KPQQGFGFLGTTTAPETWWNC 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502791|ref|XP_003520199.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 286/508 (56%), Positives = 334/508 (65%), Gaps = 82/508 (16%)

Query: 1   MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLN-LIASTISPQQQSQKAKKKRSLPG 59
           MFP    A +SNS SLSEEA +VS GTR+    GLN +I +TISP+Q   K KKKR+LPG
Sbjct: 1   MFP----AVMSNSNSLSEEA-TVSCGTRI---AGLNHVITTTISPEQ-PLKIKKKRNLPG 51

Query: 60  NPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIK 119
           NPDPDAEVIALSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQRSNK++ K
Sbjct: 52  NPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEV-K 110

Query: 120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT 179
           KKAYVCPEPSCVHH+PSRALGDLTGIKKH+CRKHGE+KWKCEKCSK+YAVQSDWKAHSKT
Sbjct: 111 KKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKT 170

Query: 180 CGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAT-TINTNGHPLHIASQN 238
           CGTREYRC CGTLFSRKD+FITHRAFCDALAEESARLSANQLAT T N     L +    
Sbjct: 171 CGTREYRCGCGTLFSRKDNFITHRAFCDALAEESARLSANQLATNTTNPLVQSLFLFPTQ 230

Query: 239 HSSSSLFPFTTTHIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQIP------- 291
             +++       +    P   P N     NN           IK E+H+F IP       
Sbjct: 231 QHNNNFINPWDPNPNPNPNPNPSNLTTLHNN-----------IKPESHNFHIPNTTTTST 279

Query: 292 --PPLSSS--QYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQK 347
               +SSS   + Q P       K++ITSP++DLH RTQP  NA ATSA H+SATALLQK
Sbjct: 280 ANNNISSSFLHHHQHPN------KSMITSPFRDLHERTQPPSNA-ATSA-HLSATALLQK 331

Query: 348 AATVGSATAAQQVHQSMGHHMTTTQLNMGELAA----FNSVSHISPDA-YLGFTSGNLST 402
           AATVG+A      H         TQL+M EL       +SV  + PD  Y+     N   
Sbjct: 332 AATVGAAAITGPTH--------VTQLSMAELGTETTHLDSVP-LPPDQRYMSMRGIN--- 379

Query: 403 WQKSDRLTRDFLGLTGDGHGDENVNGGA-NAGVNVRNALTYTAG-LDFH---------PF 451
              +D LTRDFLGLT         NGGA +  ++V++ LT+TAG ++++           
Sbjct: 380 -SNNDGLTRDFLGLT---------NGGAVDVSIDVKDMLTFTAGSVEYNHHHHQQQPYQH 429

Query: 452 ERGRTLLRP-QGFGF-AEPAESETWGDC 477
               +L +P QGFGF       E WG+C
Sbjct: 430 HHNNSLFKPQQGFGFLGTTTGPEYWGNC 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440593|ref|XP_003590574.1| Zinc finger protein-like protein [Medicago truncatula] gi|355479622|gb|AES60825.1| Zinc finger protein-like protein [Medicago truncatula]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 278/497 (55%), Positives = 335/497 (67%), Gaps = 73/497 (14%)

Query: 1   MFPPAAGAAISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPQQQSQKAKKKRSLPGN 60
           MFP    A +SNSTS SEE  +VSS         LN + ST++  QQ QK KKKRSLPGN
Sbjct: 1   MFP----ALMSNSTSFSEET-NVSSAR-------LNHLVSTLNSSQQPQKTKKKRSLPGN 48

Query: 61  PDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKK 120
           PDPDAEVIALSPKTLL TNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQR+NKD+IKK
Sbjct: 49  PDPDAEVIALSPKTLLTTNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKDVIKK 108

Query: 121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTC 180
           +AYVCPEPSCVHH+PSRALGDLTGIKKH+ RKHGE+KWKC+KCSK+YAV SDWKAHSKTC
Sbjct: 109 RAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTC 168

Query: 181 GTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNHS 240
           GTREY+CDCGTLFSRKDSFITHRAFCDALAEESAR+SANQLA T  TN +PL        
Sbjct: 169 GTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLAITT-TNTNPL-------- 219

Query: 241 SSSLFPFTT---------THIALTPWDPPQNPNPNRNNPNNDPHPNPLYIKSETHHFQI- 290
             SLF F           +HI    WDPPQ  NPN +N NN  H N   IK E+ +F   
Sbjct: 220 VQSLFLFPNQQQSFQNPQSHIT---WDPPQQ-NPNPSNLNNTLHHN---IKPESPNFHTN 272

Query: 291 ---PPPLSSSQYFQEPQAVAATTKALITSPYQDLHMRTQPSLNASATSAHHMSATALLQK 347
              PPPL    +   P+++      + +SP+   H+ TQ   + +A S  H+SATALLQK
Sbjct: 273 LSSPPPLPFLHH-TNPKSI------MTSSPF---HVSTQQPSSTAAMSP-HLSATALLQK 321

Query: 348 AATVGSATAAQQVHQSMGHHMTTTQLNMGELAAFNSVSHI-SPDAYLGFTSGNLSTWQKS 406
           AATVG+A A      +M HH  T+QL++G+   F SV+ + S D Y+    G L T +  
Sbjct: 322 AATVGAA-AITGSQPTMSHHQ-TSQLSIGQ---FGSVTQLDSVDHYINNMRGCL-TGKND 375

Query: 407 DRLTRDFLGLTGDGHGDENVNGGANAGVNVRNALTYTAGLDFHPFE--RGRTLLRPQ--- 461
           D LTRDFLGLT  G    +        ++V++ LT+T G+++H  +  +   +L+ Q   
Sbjct: 376 DGLTRDFLGLTNGGGNGGD-------SLDVKDMLTFTGGVEYHQHQPHQNMMMLKSQSQQ 428

Query: 462 -GFGF-AEPAESETWGD 476
            GFGF       E+WG+
Sbjct: 429 AGFGFLGTTTVPESWGN 445

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458522|ref|XP_004146996.1| PREDICTED: zinc finger protein NUTCRACKER-like [Cucumis sativus]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 267/468 (57%), Positives = 310/468 (66%), Gaps = 71/468 (15%)

Query: 7   GAAISNSTSLSEEAASVSSGTRVQ-DFGGLN-LIASTISPQQQSQKAKKKRSLPGNPDPD 64
            A +SNSTSLSEEAASVSS TR+  DF  LN L+ S        QK KKKRSLPGNPDPD
Sbjct: 3   AATMSNSTSLSEEAASVSSTTRIHPDFTSLNPLLPSFSDIHHPPQKPKKKRSLPGNPDPD 62

Query: 65  AEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYV 124
           A+VIALSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQR+NK++ KKKAYV
Sbjct: 63  ADVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEV-KKKAYV 121

Query: 125 CPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTRE 184
           CPEPSCVHHHPSRALGDLTGIKKH+CRKHGE+KWKC+KCSKVYAVQSDWKAHSKTCGTRE
Sbjct: 122 CPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTRE 181

Query: 185 YRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQL-------------ATTINTNGHP 231
           YRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQL             AT +N N   
Sbjct: 182 YRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAVAAAAVSGATDVNINSSS 241

Query: 232 LHIASQNHSSSSLFPF------------------TTTHIALTPWD--------------- 258
              A Q     SLFP+                  + TH++L PW+               
Sbjct: 242 ATAAVQ-----SLFPYGNHHHQYSSPSLSSLPMASQTHVSLNPWEHHQNPNNPNHNLQII 296

Query: 259 PPQNPN--PNRNNPNNDPHPNPLYIKSETHHFQIPPPL-----SSSQYFQEPQAVAATTK 311
            P++ N  P  N+ N    PN     S + +     P          + Q+ +  +++T 
Sbjct: 297 KPEDSNSHPPHNSHNFHQIPNFALSNSASSNNNNNNPFGLIQEHQHHHQQQQKVPSSSTS 356

Query: 312 ALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSATAAQQVHQ--SMGHHMT 369
           ++ITSP+++LH+      NA ATSA H+SATALLQKAATVG + +    HQ  S GH   
Sbjct: 357 SMITSPFRNLHVSVHQGSNA-ATSA-HLSATALLQKAATVGVSASKSGHHQAESAGH--- 411

Query: 370 TTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFLGLT 417
            T  NM  +  F   +HI   + LG    + +TWQK+DRLTRDFLGLT
Sbjct: 412 ITHFNMPNIPEFGPPNHIDSLSQLG---PDYATWQKTDRLTRDFLGLT 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528962|ref|XP_004171470.1| PREDICTED: zinc finger protein NUTCRACKER-like, partial [Cucumis sativus]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 266/468 (56%), Positives = 311/468 (66%), Gaps = 71/468 (15%)

Query: 7   GAAISNSTSLSEEAASVSSGTRVQ-DFGGLN-LIASTISPQQQSQKAKKKRSLPGNPDPD 64
            A +SNSTSLSEEAASVSS TR+  DF  LN L+ S        QK KKKRSLPGNPDPD
Sbjct: 3   AATMSNSTSLSEEAASVSSTTRIHPDFTSLNPLLPSFSDIHHPPQKPKKKRSLPGNPDPD 62

Query: 65  AEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYV 124
           A+VIALSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQR+NK++ KKKAYV
Sbjct: 63  ADVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEV-KKKAYV 121

Query: 125 CPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTRE 184
           CPEPSCVHHHPSRALGDLTGIKKH+CRKHGE+KWKC+KCSKVYAVQSDWKAHSKTCGTRE
Sbjct: 122 CPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTRE 181

Query: 185 YRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQL-------------ATTINTNGHP 231
           YRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQL             AT +N N   
Sbjct: 182 YRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAVAAAAVSGATDVNINS-- 239

Query: 232 LHIASQNHSSSSLFPF------------------TTTHIALTPWD--------------- 258
              +S   +  SLFP+                  + TH++L PW+               
Sbjct: 240 ---SSATAAVQSLFPYGNHHHQYSSPSLSSLPMASQTHVSLNPWEHHQNPNNPNHNLQII 296

Query: 259 PPQNPN--PNRNNPNNDPHPNPLYIKSETHHFQIPPPL-----SSSQYFQEPQAVAATTK 311
            P++ N  P  N+ N    PN     S + +     P          + Q+ +  +++T 
Sbjct: 297 KPEDSNSHPPHNSHNFHQIPNFALSNSASSNNNNNNPFGLIQEHQHHHQQQQKVPSSSTS 356

Query: 312 ALITSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSATAAQQVHQ--SMGHHMT 369
           ++ITSP+++LH+      NA ATSA H+SATALLQKAATVG + +    HQ  S GH   
Sbjct: 357 SMITSPFRNLHVSVHQGSNA-ATSA-HLSATALLQKAATVGVSASKSGHHQAESAGH--- 411

Query: 370 TTQLNMGELAAFNSVSHISPDAYLGFTSGNLSTWQKSDRLTRDFLGLT 417
            T  NM  +  F   +HI   + LG    + +TWQK+DRLTRDFLGLT
Sbjct: 412 ITHFNMPNIPEFGPPNHIDSLSQLG---PDYATWQKTDRLTRDFLGLT 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	477
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.503	0.597	0.677	1.6e-100
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.488	0.512	0.689	3.8e-92
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.433	0.401	0.688	2.2e-86
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.364	0.345	0.786	5.9e-86
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.412	0.422	0.717	4.1e-85
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.373	0.351	0.805	8.2e-85
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.480	0.458	0.636	1.7e-84
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.345	0.365	0.849	1.9e-83
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.392	0.310	0.729	1.4e-82
TAIR|locus:2204503	467	AT1G14580 "AT1G14580" [Arabido	0.335	0.342	0.826	2.2e-82

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
 Identities = 168/248 (67%), Positives = 191/248 (77%)

Query:    14 TSLSEEAASVSSGTR----VQDFGGLNLIASTISPXXXXXXXXXXRSLPGNPDPDAEVIA 69
             +SLS EA S SSG      +Q+F G + + S++            R LPGNPDPDAEVIA
Sbjct:    12 SSLSTEA-SASSGNNTLSTIQEFSGFHNVISSVCTHTETHKPKKKRGLPGNPDPDAEVIA 70

Query:    70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPS 129
             LSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQ++ K+  KKK YVCPE +
Sbjct:    71 LSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKNTKEQQKKKVYVCPETN 130

Query:   130 CVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDC 189
             C HHHPSRALGDLTGIKKHFCRKHGE+KWKCEKCSK YAVQSDWKAH+K CGTR+YRCDC
Sbjct:   131 CAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICGTRDYRCDC 190

Query:   190 GTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGH-PLHIASQNHSSSSLFPFT 248
             GTLFSRKD+FITHRAFCDALAEESARL +   +   N N +   H    N SSS LF  T
Sbjct:   191 GTLFSRKDTFITHRAFCDALAEESARLHSTSSSNLTNPNPNFQGHHFMFNKSSSLLF--T 248

Query:   249 TTHIALTP 256
             ++ + + P
Sbjct:   249 SSPLFIEP 256

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 3.8e-92, Sum P(3) = 3.8e-92
 Identities = 164/238 (68%), Positives = 187/238 (78%)

Query:    10 ISNSTSLSEEAASVSSGTRVQDFGGLNLIASTISPXXX-XXXXXXXRSLPGNPDPDAEVI 68
             +SN TS S + ASVSSG R +  G  N+                  R+ PGNPDP+AEV+
Sbjct:    21 MSNLTSASGDQASVSSGNRTETSGS-NINQHHQEQCFVPQSSLKRKRNQPGNPDPEAEVM 79

Query:    69 ALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP 128
             ALSPKTL+ATNRF+CEVCNKGFQRDQNLQLH+RGHNLPWKLKQRSNKD+++KK YVCPEP
Sbjct:    80 ALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKKVYVCPEP 139

Query:   129 SCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD 188
              CVHHHPSRALGDLTGIKKHF RKHGE+KWKCEKCSK YAVQSDWKAH+KTCGT+EY+CD
Sbjct:   140 GCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEYKCD 199

Query:   189 CGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNH---SSSS 243
             CGTLFSR+DSFITHRAFCDALAEESAR   N +    + + H  H  +Q +   SSSS
Sbjct:   200 CGTLFSRRDSFITHRAFCDALAEESARAMPNPIMIQASNSPHHHHHQTQQNIGFSSSS 257

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 2.2e-86, Sum P(3) = 2.2e-86
 Identities = 144/209 (68%), Positives = 171/209 (81%)

Query:     8 AAISNSTSLSEEAASVSSGTRVQDFGGLNLIASTIS-PXXXXXXXXXXRSLPGNPDPDAE 66
             + I +S+S ++     SSGT   DF   +   S I  P          R+ PGNP+PDAE
Sbjct:     9 SVIPSSSSSAQPFFITSSGTGDNDFNRKDTFMSMIQQPNSSAPPPKKRRNQPGNPNPDAE 68

Query:    67 VIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP 126
             V+ALSPKTL+ATNRF+C+VCNKGFQR+QNLQLHRRGHNLPWKLKQ+S K++ K+K Y+CP
Sbjct:    69 VVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEV-KRKVYLCP 127

Query:   127 EPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYR 186
             EP+CVHH PSRALGDLTGIKKH+ RKHGE+KWKCEKCSK YAVQSDWKAHSKTCGT+EYR
Sbjct:   128 EPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYR 187

Query:   187 CDCGTLFSRKDSFITHRAFCDALAEESAR 215
             CDCGT+FSR+DS+ITHRAFCDAL +E+AR
Sbjct:   188 CDCGTIFSRRDSYITHRAFCDALIQETAR 216

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 5.9e-86, Sum P(3) = 5.9e-86
 Identities = 140/178 (78%), Positives = 157/178 (88%)

Query:    55 RSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSN 114
             R+ PG PDPDA+VIALSP TL+ATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKLKQRS 
Sbjct:    56 RNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSK 115

Query:   115 KDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWK 174
             +++IKKK Y+CP  +CVHH  SRALGDLTGIKKH+ RKHGE+KWKCEKCSK YAVQSDWK
Sbjct:   116 QEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWK 175

Query:   175 AHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSA----NQLATTINTN 228
             AH+KTCGTREY+CDCGTLFSRKDSFITHRAFCDAL EE AR+S+    N + +T N N
Sbjct:   176 AHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLN 233

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 4.1e-85, Sum P(3) = 4.1e-85
 Identities = 147/205 (71%), Positives = 172/205 (83%)

Query:    17 SEEAASVSSGT---RVQDFGGLNLIASTISPXXXXXXXXXXRSLPGNPDPDAEVIALSPK 73
             SE   ++SSG+   + Q    L+   S I+P          R+LPGNPDP+AEVIALSP 
Sbjct:     3 SEVLQTISSGSGFAQPQSSSTLDHDESLINPPLVKKK----RNLPGNPDPEAEVIALSPT 58

Query:    74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHH 133
             TL+ATNRF+CEVC KGFQRDQNLQLHRRGHNLPWKLKQR++K++ +K+ YVCPE +CVHH
Sbjct:    59 TLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKTCVHH 117

Query:   134 HPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLF 193
             H SRALGDLTGIKKHFCRKHGE+KW CEKC+K YAVQSDWKAHSKTCGTREYRCDCGT+F
Sbjct:   118 HSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIF 177

Query:   194 SRKDSFITHRAFCDALAEESARLSA 218
             SR+DSFITHRAFCDALAEE+A+++A
Sbjct:   178 SRRDSFITHRAFCDALAEETAKINA 202

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
 Identities = 145/180 (80%), Positives = 166/180 (92%)

Query:    55 RSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSN 114
             R+LPGNPDP+AEVIALSPKTL+ATNRF+CE+C KGFQRDQNLQLHRRGHNLPWKLKQR++
Sbjct:    44 RNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTS 103

Query:   115 KDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWK 174
             K++ +K+ YVCPE SCVHHHP+RALGDLTGIKKHFCRKHGE+KWKCEKC+K YAVQSDWK
Sbjct:   104 KEV-RKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWK 162

Query:   175 AHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSA-NQLATTINTNGHPLH 233
             AHSKTCGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+ARL+A + L +   T G  L+
Sbjct:   163 AHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATAGSNLN 222

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 156/245 (63%), Positives = 182/245 (74%)

Query:    18 EEAASVSSGTRVQDFGGLNLIASTISPXXXXXXXXXXRSLPGNPDPDAEVIALSPKTLLA 77
             + +++VS    V   G  NL   ++            R+LPG PDPDAEVIALSPKTL+A
Sbjct:     6 DNSSTVSGDASVSSTGNQNLTPKSVGKKK--------RNLPGMPDPDAEVIALSPKTLMA 57

Query:    78 TNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSR 137
             TNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKL+QRS K++ +KK YVCP   CVHH PSR
Sbjct:    58 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEV-RKKVYVCPVSGCVHHDPSR 116

Query:   138 ALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKD 197
             ALGDLTGIKKHFCRKHGE+KWKCEKCSK YAVQSDWKAHSK CGT+EY+CDCGTLFSR+D
Sbjct:   117 ALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRD 176

Query:   198 SFITHRAFCDALAEESAR--LSANQLATTINTNGHPLHIASQN----HSSSSLFPFTTTH 251
             SFITHRAFCDALAEESA+    + +L     T  +P  I  ++     SS SL P +   
Sbjct:   177 SFITHRAFCDALAEESAKNHTQSKKLYPETVTRKNP-EIEQKSPAAVESSPSLPPSSPPS 235

Query:   252 IALTP 256
             +A+ P
Sbjct:   236 VAIAP 240

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
 Identities = 141/166 (84%), Positives = 156/166 (93%)

Query:    55 RSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSN 114
             R+LPG PDP++EVIALSPKTLLATNRFVCE+CNKGFQRDQNLQLHRRGHNLPWKL+Q+SN
Sbjct:    37 RNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSN 96

Query:   115 KDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWK 174
             K++ KKK YVCPE SCVHH PSRALGDLTGIKKHFCRKHGE+KWKC+KCSK YAVQSDWK
Sbjct:    97 KEV-KKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWK 155

Query:   175 AHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQ 220
             AHSK CGT+EY+CDCGTLFSR+DSFITHRAFCDALAEE+AR   +Q
Sbjct:   156 AHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENARSHHSQ 201

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 1.4e-82, Sum P(3) = 1.4e-82
 Identities = 140/192 (72%), Positives = 167/192 (86%)

Query:    55 RSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSN 114
             R+ P  P+ DAEVIALSPKTL+ATNRF+CEVCNKGFQR+QNLQLHRRGHNLPWKLKQ+S 
Sbjct:    55 RNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKST 114

Query:   115 KDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWK 174
             K++ K+K Y+CPEPSCVHH PSRALGDLTGIKKH+ RKHGE+KWKC+KCSK YAVQSDWK
Sbjct:   115 KEV-KRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWK 173

Query:   175 AHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPL-- 232
             AHSKTCGT+EYRCDCGTLFSR+DSFITHRAFCDALA+ESAR   +   T++ ++  P   
Sbjct:   174 AHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTS--LTSLPSHHFPYGQ 231

Query:   233 HIASQNHSSSSL 244
             +  + N+++SS+
Sbjct:   232 NTNNSNNNASSM 243

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2204503 AT1G14580 "AT1G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
 Identities = 133/161 (82%), Positives = 154/161 (95%)

Query:    55 RSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSN 114
             R+ PGNP+PDAEVIALSPKT++ATNRF+CEVCNKGFQR+QNLQLHRRGHNLPWKLKQ+SN
Sbjct:    56 RNQPGNPNPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSN 115

Query:   115 KDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWK 174
             K++ ++K Y+CPEPSCVHH P+RALGDLTGIKKH+ RKHGE+KWKC+KCSK YAVQSDWK
Sbjct:   116 KEV-RRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWK 174

Query:   175 AHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESAR 215
             AHSKTCGT+EYRCDCGT+FSR+DS+ITHRAFCDAL +ESAR
Sbjct:   175 AHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQESAR 215

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	477
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 25/112 (22%), Positives = 32/112 (28%), Gaps = 5/112 (4%)

Query: 256 PWDP-PQNPNPNRNNPNNDPHPNPLYIKSETHHFQIPPPLSSSQYFQEPQAVAATTKALI 314
           PWDP PQ P P    P   P P P                  +     P A    T AL 
Sbjct: 48  PWDPSPQAPPPVAQLPQPLPQPPPT---QALQALPAGDQQQHNTPTGSPAANPPATFALP 104

Query: 315 TSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSATAAQQVHQSMGH 366
             P     ++T+P           ++               A QQ+ Q  G 
Sbjct: 105 AGPAGP-TIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGA 155

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	477
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.91
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.88
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.76
KOG3608	467	consensus Zn finger proteins [General function pre	99.71
KOG3576	267	consensus Ovo and related transcription factors [T	99.7
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.58
KOG3608	467	consensus Zn finger proteins [General function pre	99.45
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.44
KOG3576	267	consensus Ovo and related transcription factors [T	99.37
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.32
PLN03086	567	PRLI-interacting factor K; Provisional	99.06
PLN03086	567	PRLI-interacting factor K; Provisional	98.83
PHA00733	128	hypothetical protein	98.81
PHA00733	128	hypothetical protein	98.72
PHA02768	55	hypothetical protein; Provisional	98.53
PHA02768	55	hypothetical protein; Provisional	98.35
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.29
KOG3993	500	consensus Transcription factor (contains Zn finger	98.16
KOG3993	500	consensus Transcription factor (contains Zn finger	98.05
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.82
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.78
PHA00616	44	hypothetical protein	97.73
PHA00732	79	hypothetical protein	97.68
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.56
PHA00732	79	hypothetical protein	97.41
PHA00616	44	hypothetical protein	97.3
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.17
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.13
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.77
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.64
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.55
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.5
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.44
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.31
COG5048	467	FOG: Zn-finger [General function prediction only]	96.2
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.06
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.02
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.6
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.27
smart00355	26	ZnF_C2H2 zinc finger.	95.11
COG5048	467	FOG: Zn-finger [General function prediction only]	95.07
PRK04860	160	hypothetical protein; Provisional	94.69
PRK04860	160	hypothetical protein; Provisional	94.66
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	94.31
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.24
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.11
KOG1146	1406	consensus Homeobox protein [General function predi	93.46
smart00355	26	ZnF_C2H2 zinc finger.	93.32
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	93.18
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.14
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.05
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	92.53
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.34
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.84
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	89.71
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	88.76
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	88.51
KOG1146	1406	consensus Homeobox protein [General function predi	88.2
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	87.47
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	83.99
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	83.82
KOG2893	341	consensus Zn finger protein [General function pred	83.04
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	82.56
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	80.5

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.91  E-value=8.8e-25  Score=209.73  Aligned_cols=122  Identities=22%  Similarity=0.478  Sum_probs=61.4

Q ss_pred             CceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccc
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKW  158 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf  158 (477)
                      ..|+|.+|||.|.+..+|.+|..+|..-           ...+.+.|++|       +|.|.....|+.|+|+|+  -++
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~-----------~s~ka~~C~~C-------~K~YvSmpALkMHirTH~--l~c  188 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQTHRSL-----------DSKKAFSCKYC-------GKVYVSMPALKMHIRTHT--LPC  188 (279)
T ss_pred             Cceeccccccccccccccchhhcccccc-----------cccccccCCCC-------CceeeehHHHhhHhhccC--CCc
Confidence            3455555555555555555555555300           12344555555       555555555555555554  345


Q ss_pred             cccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHH-----------hhhhhcChHHHHHHH
Q 011807          159 KCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAF-----------CDALAEESARLSANQ  220 (477)
Q Consensus       159 ~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~-----------C~k~f~~~~~L~~H~  220 (477)
                      +|.+|||.|.+..-|+.|+|+ +|||||.|. |+|.|..+++|+.|+.+           |+|.|..++.|.+|.
T Consensus       189 ~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  189 ECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             ccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhh
Confidence            555555555555555555555 455555555 55555555555555543           555555555555554

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.88  E-value=1.4e-22  Score=194.56  Aligned_cols=134  Identities=22%  Similarity=0.420  Sum_probs=124.0

Q ss_pred             cccccCCCCCCCCCCchhhhhcCccccC---CCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccC
Q 011807           49 QKAKKKRSLPGNPDPDAEVIALSPKTLL---ATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVC  125 (477)
Q Consensus        49 ~~~kkk~~~~~~~~~~~~~~~~~~~~~~---~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C  125 (477)
                      ...+-++..+++...+...+..|+.+|-   ..+.+.|++|+|.|.+...|..|+|+|+                -+++|
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~----------------l~c~C  190 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT----------------LPCEC  190 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC----------------CCccc
Confidence            4445667778888888889999999885   4688999999999999999999999997                57899


Q ss_pred             CCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHH
Q 011807          126 PEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHR  203 (477)
Q Consensus       126 ~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~  203 (477)
                      .+|       ||.|.+..-|+-|+|+|||||||.|..|+|+|..+++|+.|++| .+.|+|.|. |+|.|+.++.|.+|.
T Consensus       191 ~iC-------GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  191 GIC-------GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             ccc-------cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhh
Confidence            999       99999999999999999999999999999999999999999999 788999999 999999999999999


Q ss_pred             HH
Q 011807          204 AF  205 (477)
Q Consensus       204 ~~  205 (477)
                      .-
T Consensus       264 ES  265 (279)
T KOG2462|consen  264 ES  265 (279)
T ss_pred             hh
Confidence            85

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.76  E-value=2.3e-19  Score=192.31  Aligned_cols=75  Identities=23%  Similarity=0.514  Sum_probs=62.5

Q ss_pred             ccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcccCCcc-----eecC----CCCcc
Q 011807          123 YVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTRE-----YRCD----CGTLF  193 (477)
Q Consensus       123 ~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~~gekp-----y~C~----Cgk~F  193 (477)
                      .+|-+|       -|+...++.|+.|+|+|+|||||+|.+|+++|+++.+|+.|+-+|..||     |.|+    |-+.|
T Consensus       606 NqCiiC-------~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kf  678 (958)
T KOG1074|consen  606 NQCIIC-------LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKF  678 (958)
T ss_pred             cceeee-------eecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccc
Confidence            477777       9999999999999999999999999999999999999999998865543     5564    66777


Q ss_pred             cChhHHHHHHH
Q 011807          194 SRKDSFITHRA  204 (477)
Q Consensus       194 ~~~~~L~~H~~  204 (477)
                      ...-.|..|++
T Consensus       679 tn~V~lpQhIr  689 (958)
T KOG1074|consen  679 TNAVTLPQHIR  689 (958)
T ss_pred             cccccccceEE
Confidence            66666666654

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.71  E-value=2.7e-18  Score=168.82  Aligned_cols=171  Identities=15%  Similarity=0.247  Sum_probs=153.5

Q ss_pred             CCCCCCCCchhhhhcCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCC
Q 011807           56 SLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHP  135 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~  135 (477)
                      ..+.+...+...+..|.++|+++|...|+.||.-|.++..|..|++.-+.            ....+|.|..|       
T Consensus       183 ~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~------------l~~n~fqC~~C-------  243 (467)
T KOG3608|consen  183 AMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTE------------LNTNSFQCAQC-------  243 (467)
T ss_pred             hhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhh------------hcCCchHHHHH-------
Confidence            44566677888899999999999999999999999999999999987762            25669999999       


Q ss_pred             CCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-c-CCcceecC-CCCcccChhHHHHHHHH-------
Q 011807          136 SRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-C-GTREYRCD-CGTLFSRKDSFITHRAF-------  205 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~-gekpy~C~-Cgk~F~~~~~L~~H~~~-------  205 (477)
                      .|.|.....|+.|++.|-.  -|+|+.|+......+.|..|++. | ..|||+|+ |+++|.+.+.|.+|..+       
T Consensus       244 ~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~  321 (467)
T KOG3608|consen  244 FKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQ  321 (467)
T ss_pred             HHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcccccee
Confidence            9999999999999999964  59999999999999999999999 4 67999999 99999999999999985       


Q ss_pred             -----hhhhhcChHHHHHHHHHhccCCCCCcccCCCCCCCCCCCCCC
Q 011807          206 -----CDALAEESARLSANQLATTINTNGHPLHIASQNHSSSSLFPF  247 (477)
Q Consensus       206 -----C~k~f~~~~~L~~H~~~h~~~~~~k~~~C~~C~~~fss~~~~  247 (477)
                           |..+|+...++++|++.+....++.+|.|..|.+.|.+-..+
T Consensus       322 C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L  368 (467)
T KOG3608|consen  322 CEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSL  368 (467)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhH
Confidence                 888999999999999999888889999999999998765444

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.70  E-value=2.3e-17  Score=151.58  Aligned_cols=108  Identities=27%  Similarity=0.579  Sum_probs=101.5

Q ss_pred             CCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807           77 ATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus        77 ~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      +...|.|.+|+|.|....-|.+|++.|.              ..|.|.|..|       ||.|.+...|++|+|+|+|.+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~--------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvr  172 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHS--------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVR  172 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhcc--------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcc
Confidence            4578999999999999999999999998              8899999999       999999999999999999999


Q ss_pred             cccccccccccCChhHhhhhhcc-cC-----------CcceecC-CCCcccChhHHHHHHHH
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT-CG-----------TREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~-~g-----------ekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      ||+|..|+|.|+++-.|..|.+. ||           +|-|+|+ ||..-.+...+..|++.
T Consensus       173 pykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~  234 (267)
T KOG3576|consen  173 PYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKL  234 (267)
T ss_pred             ccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHh
Confidence            99999999999999999999988 86           4779999 99999999999999986

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.58  E-value=3.2e-16  Score=168.39  Aligned_cols=92  Identities=21%  Similarity=0.368  Sum_probs=76.0

Q ss_pred             cccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHH------------------hhhhhcChHHH
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAF------------------CDALAEESARL  216 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~------------------C~k~f~~~~~L  216 (477)
                      |-+|-+|.+...-++.|+.|.|+ +|||||+|+ ||+.|.++.+||.|+-+                  |.+.|...-.|
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l  684 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL  684 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence            56899999999999999999999 999999999 99999999999999873                  88889999999


Q ss_pred             HHHHHHhccCCC-------C---CcccCCCCCCCCCCCCCCc
Q 011807          217 SANQLATTINTN-------G---HPLHIASQNHSSSSLFPFT  248 (477)
Q Consensus       217 ~~H~~~h~~~~~-------~---k~~~C~~C~~~fss~~~~~  248 (477)
                      ..|+|+|.....       +   ---+|.+|.+.|+....+.
T Consensus       685 pQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~  726 (958)
T KOG1074|consen  685 PQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFS  726 (958)
T ss_pred             cceEEeecCCCCCCCcccccccchhcccchhhhcccccccch
Confidence            999988863221       1   1245888888876555443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.45  E-value=3.3e-14  Score=140.25  Aligned_cols=145  Identities=22%  Similarity=0.373  Sum_probs=124.6

Q ss_pred             CCCCCCCCchhhhhcC--ccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCC
Q 011807           56 SLPGNPDPDAEVIALS--PKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHH  133 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~--~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~  133 (477)
                      .-++.-+.+...+-.|  +++....++|.|..|.|.|.++..|..|++.|-                .-|+|+.|     
T Consensus       211 p~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv----------------n~ykCplC-----  269 (467)
T KOG3608|consen  211 PHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV----------------NCYKCPLC-----  269 (467)
T ss_pred             chHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh----------------hccccccc-----
Confidence            3444444444444433  445566789999999999999999999999986                57999999     


Q ss_pred             CCCCcccCchhhhhhhhh-ccccccccccccccccCChhHhhhhhcccCCcceecC---CCCcccChhHHHHHHHH----
Q 011807          134 HPSRALGDLTGIKKHFCR-KHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD---CGTLFSRKDSFITHRAF----  205 (477)
Q Consensus       134 ~~~k~F~~~~~L~~H~r~-Htgekpf~C~~C~K~F~~~s~L~~H~r~~gekpy~C~---Cgk~F~~~~~L~~H~~~----  205 (477)
                        +.+....+.|..|++. |..+|||+|+.|++.|.+.++|.+|..+|.+.-|.|+   |..+|++...|++|.+.    
T Consensus       270 --dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg  347 (467)
T KOG3608|consen  270 --DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEG  347 (467)
T ss_pred             --ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccC
Confidence              8999999999999985 8889999999999999999999999999888899996   99999999999999983    


Q ss_pred             ----------hhhhhcChHHHHHHHH-Hh
Q 011807          206 ----------CDALAEESARLSANQL-AT  223 (477)
Q Consensus       206 ----------C~k~f~~~~~L~~H~~-~h  223 (477)
                                |++.|+....|.+|.+ .|
T Consensus       348 ~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH  376 (467)
T KOG3608|consen  348 NNPILYACHCCDRFFTSGKSLSAHLMKKH  376 (467)
T ss_pred             CCCCceeeecchhhhccchhHHHHHHHhh
Confidence                      9999999999999954 44

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.44  E-value=1.9e-14  Score=152.50  Aligned_cols=106  Identities=24%  Similarity=0.538  Sum_probs=95.8

Q ss_pred             ceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc-----
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG-----  154 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg-----  154 (477)
                      ...|++|.+.+++...|+.|++.-+.            ..+..|.|..|       ..+|..+..|.+|+.+|.-     
T Consensus       210 lltcpycdrgykrltslkeHikyrhe------------kne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa  270 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHE------------KNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQA  270 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHh------------hCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCccc
Confidence            46799999999999999999986541            25567999999       9999999999999998852     


Q ss_pred             --------cccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHH
Q 011807          155 --------ERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRA  204 (477)
Q Consensus       155 --------ekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~  204 (477)
                              .|.|+|.+|+|+|..+-.|+.|+|| .|||||.|+ |+|+|+...++..|+.
T Consensus       271 ~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  271 ISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence                    4689999999999999999999999 899999999 9999999999999986

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.37  E-value=1.2e-13  Score=127.29  Aligned_cols=106  Identities=18%  Similarity=0.344  Sum_probs=91.3

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccCh
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRK  196 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  196 (477)
                      +...|.|.+|       +|.|.-..-|.+|++.|...|.|.|..|||.|...-+|++|+|+ +|.+||+|. |+|.|..+
T Consensus       114 d~d~ftCrvC-------gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  114 DQDSFTCRVC-------GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CCCeeeeehh-------hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence            5678999999       99999999999999999999999999999999999999999999 999999999 99999999


Q ss_pred             hHHHHHHHH-hhhhhcChHHHHHHHHHhccCCCCCcccCCCCCCCC
Q 011807          197 DSFITHRAF-CDALAEESARLSANQLATTINTNGHPLHIASQNHSS  241 (477)
Q Consensus       197 ~~L~~H~~~-C~k~f~~~~~L~~H~~~h~~~~~~k~~~C~~C~~~f  241 (477)
                      -+|..|.+. ++..-....          ....+|.|.|+.||.+.
T Consensus       187 csleshl~kvhgv~~~yay----------kerr~kl~vcedcg~t~  222 (267)
T KOG3576|consen  187 CSLESHLKKVHGVQHQYAY----------KERRAKLYVCEDCGYTS  222 (267)
T ss_pred             ccHHHHHHHHcCchHHHHH----------HHhhhheeeecccCCCC
Confidence            999999874 443221111          12346789999999874

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.32  E-value=3.1e-13  Score=143.44  Aligned_cols=80  Identities=23%  Similarity=0.580  Sum_probs=75.9

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccC
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  195 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~  195 (477)
                      ..+-.|.|+.|       +|.|...+.|.+|+-.|+|.|||+|.+|.|+|..+-.|..|+|. .|||||.|+ |+|+|+.
T Consensus       890 te~gmyaCDqC-------DK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSH  962 (1007)
T KOG3623|consen  890 TEDGMYACDQC-------DKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSH  962 (1007)
T ss_pred             CccccchHHHH-------HHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhccc
Confidence            45668999999       99999999999999999999999999999999999999999999 899999999 9999999


Q ss_pred             hhHHHHHHH
Q 011807          196 KDSFITHRA  204 (477)
Q Consensus       196 ~~~L~~H~~  204 (477)
                      ..++..||.
T Consensus       963 SGSYSQHMN  971 (1007)
T KOG3623|consen  963 SGSYSQHMN  971 (1007)
T ss_pred             ccchHhhhc
Confidence            999988874

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.06  E-value=2.1e-10  Score=122.94  Aligned_cols=104  Identities=23%  Similarity=0.463  Sum_probs=87.7

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccc
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERK  157 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekp  157 (477)
                      ++.+.|+.|++.|. ...|..|+++|+                +++.|+ |       ++.+ .+..|..|+++|..+|+
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H----------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kp  504 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH----------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRL  504 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC----------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCc
Confidence            45678999999996 678999999875                689998 7       7655 66899999999999999


Q ss_pred             ccccccccccC----------ChhHhhhhhcccCCcceecC-CCCcccChhHHHHHHHHhhh
Q 011807          158 WKCEKCSKVYA----------VQSDWKAHSKTCGTREYRCD-CGTLFSRKDSFITHRAFCDA  208 (477)
Q Consensus       158 f~C~~C~K~F~----------~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H~~~C~k  208 (477)
                      +.|.+|++.|.          ..+.|..|+.++|.+++.|. |++.|..+ .|..|+..|+.
T Consensus       505 i~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        505 ITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             eeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence            99999999995          24589999999999999999 99999765 67888877654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.83  E-value=7.3e-09  Score=111.18  Aligned_cols=136  Identities=17%  Similarity=0.244  Sum_probs=92.9

Q ss_pred             ceecCCCCccccChhHHHHHHhhcC-CCccccc--cccc--cccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHN-LPWKLKQ--RSNK--DIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~-~p~~c~~--~~~~--~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      .-.|..|..... ..+|..|..... ....|..  |...  ...-++.+.|+.|       ++.|. ...|+.|+++|+ 
T Consensus       407 ~V~C~NC~~~i~-l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~C-------gk~f~-~s~LekH~~~~H-  476 (567)
T PLN03086        407 TVECRNCKHYIP-SRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKC-------GQAFQ-QGEMEKHMKVFH-  476 (567)
T ss_pred             eEECCCCCCccc-hhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCC-------CCccc-hHHHHHHHHhcC-
Confidence            457999987654 567888886554 1223431  2211  1223567899999       88886 678999999986 


Q ss_pred             cccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhH---HHHHHHHhhhhhcChHHHHHHHHHhccCCCC
Q 011807          155 ERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDS---FITHRAFCDALAEESARLSANQLATTINTNG  229 (477)
Q Consensus       155 ekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~---L~~H~~~C~k~f~~~~~L~~H~~~h~~~~~~  229 (477)
                       +++.|+ |++.+ .+..|..|+++ +.+|++.|. |++.|.....   +..          ....|..|..+    .+.
T Consensus       477 -kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d----------~~s~Lt~HE~~----CG~  539 (567)
T PLN03086        477 -EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRD----------RLRGMSEHESI----CGS  539 (567)
T ss_pred             -CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhh----------hhhhHHHHHHh----cCC
Confidence             899999 99866 67899999998 899999999 9999953210   000          11233344433    356


Q ss_pred             CcccCCCCCCCCC
Q 011807          230 HPLHIASQNHSSS  242 (477)
Q Consensus       230 k~~~C~~C~~~fs  242 (477)
                      +++.|..|++.+.
T Consensus       540 rt~~C~~Cgk~Vr  552 (567)
T PLN03086        540 RTAPCDSCGRSVM  552 (567)
T ss_pred             cceEccccCCeee
Confidence            6899999998754

>PHA00733 hypothetical protein

Probab=98.81  E-value=2.9e-09  Score=94.16  Aligned_cols=79  Identities=15%  Similarity=0.288  Sum_probs=65.5

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhh--hh---hccccccccccccccccCChhHhhhhhcccCCcceecC-CCCc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKH--FC---RKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD-CGTL  192 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H--~r---~Htgekpf~C~~C~K~F~~~s~L~~H~r~~gekpy~C~-Cgk~  192 (477)
                      ..+++.|.+|       .+.|.....|..+  ++   .+.+++||+|++|++.|.....|..|++.+ +++|.|. |++.
T Consensus        37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~  108 (128)
T PHA00733         37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE  108 (128)
T ss_pred             hhhhHHHHHH-------hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence            5688999998       7777776666555  21   334588999999999999999999999875 4689999 9999


Q ss_pred             ccChhHHHHHHHH
Q 011807          193 FSRKDSFITHRAF  205 (477)
Q Consensus       193 F~~~~~L~~H~~~  205 (477)
                      |.....|++|+..
T Consensus       109 F~~~~sL~~H~~~  121 (128)
T PHA00733        109 FRNTDSTLDHVCK  121 (128)
T ss_pred             cCCHHHHHHHHHH
Confidence            9999999999863

>PHA00733 hypothetical protein

Probab=98.72  E-value=6.7e-09  Score=91.82  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=75.3

Q ss_pred             hhhhcCccccCCCCceecCCCCccccChhHHHHH--HhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCch
Q 011807           66 EVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLH--RRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLT  143 (477)
Q Consensus        66 ~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H--~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~  143 (477)
                      +.+........+.+++.|.+|.+.|.....|..|  ++.|.           ....+++|.|+.|       ++.|....
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-----------~~~~~kPy~C~~C-------gk~Fss~s   87 (128)
T PHA00733         26 EELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL-----------TSKAVSPYVCPLC-------LMPFSSSV   87 (128)
T ss_pred             HHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhc-----------ccCCCCCccCCCC-------CCcCCCHH
Confidence            3344444444556889999999999887777666  22221           0125789999999       99999999


Q ss_pred             hhhhhhhhccccccccccccccccCChhHhhhhhcc-cC
Q 011807          144 GIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CG  181 (477)
Q Consensus       144 ~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~g  181 (477)
                      .|..|++.|  +++|.|.+|++.|.....|.+|+.. |+
T Consensus        88 ~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         88 SLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            999999987  4679999999999999999999987 65

>PHA02768 hypothetical protein; Provisional

Probab=98.53  E-value=2.7e-08  Score=74.01  Aligned_cols=42  Identities=14%  Similarity=0.369  Sum_probs=24.9

Q ss_pred             ccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHh
Q 011807          123 YVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDW  173 (477)
Q Consensus       123 ~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L  173 (477)
                      |.|++|       ++.|.....|..|+++|+  ++|+|..|+|.|.+.+.|
T Consensus         6 y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            556665       666666666666666665  456666666666555444

>PHA02768 hypothetical protein; Provisional

Probab=98.35  E-value=1.5e-07  Score=70.09  Aligned_cols=43  Identities=16%  Similarity=0.502  Sum_probs=39.3

Q ss_pred             cccccccccccCChhHhhhhhcccCCcceecC-CCCcccChhHHH
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD-CGTLFSRKDSFI  200 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~  200 (477)
                      -|+|++|||.|.+.++|..|+++|. ++|+|. |++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence            3899999999999999999999965 899999 999999988764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.29  E-value=2.5e-07  Score=58.70  Aligned_cols=26  Identities=27%  Similarity=0.778  Sum_probs=22.4

Q ss_pred             hhhhhhhhccccccccccccccccCC
Q 011807          144 GIKKHFCRKHGERKWKCEKCSKVYAV  169 (477)
Q Consensus       144 ~L~~H~r~Htgekpf~C~~C~K~F~~  169 (477)
                      +|.+|+++|+++|||+|++|+|.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47889999999999999999998863

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.16  E-value=3.8e-07  Score=92.78  Aligned_cols=81  Identities=21%  Similarity=0.528  Sum_probs=63.2

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcccCCc------------------
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTR------------------  183 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~~gek------------------  183 (477)
                      .|.|..|       ...|.+...|.+|+..-.-.--|+|++|+|.|.-..+|..|+|+|.-|                  
T Consensus       267 dyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r  339 (500)
T KOG3993|consen  267 DYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR  339 (500)
T ss_pred             HHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence            4999999       889999999999986544444599999999999999999999986321                  


Q ss_pred             ----------------ceecC-CCCcccChhHHHHHHHHhhhh
Q 011807          184 ----------------EYRCD-CGTLFSRKDSFITHRAFCDAL  209 (477)
Q Consensus       184 ----------------py~C~-Cgk~F~~~~~L~~H~~~C~k~  209 (477)
                                      -|.|. |+|.|.+...|++|+..|.+.
T Consensus       340 ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  340 AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence                            26677 777777777777776655444

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.05  E-value=1e-06  Score=89.70  Aligned_cols=91  Identities=21%  Similarity=0.258  Sum_probs=63.3

Q ss_pred             CCCCCCCCchhhhhcCccccCCCCceecCCCCccccChhHHHHHHhhcCC-Cccc--cccccc----------c------
Q 011807           56 SLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNL-PWKL--KQRSNK----------D------  116 (477)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~-p~~c--~~~~~~----------~------  116 (477)
                      ++|...+.+.-.++.|+=.-.....|+|++|+|+|+...||..|+|-|.. +.--  .....+          +      
T Consensus       271 qLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~  350 (500)
T KOG3993|consen  271 QLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGD  350 (500)
T ss_pred             HHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCC
Confidence            45556666666677665544445579999999999999999999999961 1000  000000          0      


Q ss_pred             ccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcc
Q 011807          117 IIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH  153 (477)
Q Consensus       117 ~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Ht  153 (477)
                      ...+..|.|.+|       +|.|.+...|+.|+.+|.
T Consensus       351 dss~gi~~C~~C-------~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  351 DSSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             cccCceeecHHh-------hhhhHHHHHHHHhHHhhh
Confidence            023347999999       999999999999987775

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.82  E-value=2e-05  Score=77.83  Aligned_cols=24  Identities=29%  Similarity=0.701  Sum_probs=14.6

Q ss_pred             CCceecCC--CCccccChhHHHHHHh
Q 011807           78 TNRFVCEV--CNKGFQRDQNLQLHRR  101 (477)
Q Consensus        78 ~k~~~C~~--Cgk~F~~~~~L~~H~r  101 (477)
                      +|+|+|++  |.|.|+....|+.|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~l  372 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHML  372 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhh
Confidence            36666655  6666666666666654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.78  E-value=9.9e-06  Score=51.35  Aligned_cols=24  Identities=38%  Similarity=0.951  Sum_probs=22.0

Q ss_pred             Hhhhhhcc-cCCcceecC-CCCcccC
Q 011807          172 DWKAHSKT-CGTREYRCD-CGTLFSR  195 (477)
Q Consensus       172 ~L~~H~r~-~gekpy~C~-Cgk~F~~  195 (477)
                      +|.+|+++ +++|||.|+ |++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58999999 999999999 9999974

...

>PHA00616 hypothetical protein

Probab=97.73  E-value=9.5e-06  Score=57.66  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=21.7

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccc
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCS  164 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~  164 (477)
                      +|+|..|       |+.|..+..|..|++.|++++++.|+.--
T Consensus         1 pYqC~~C-------G~~F~~~s~l~~H~r~~hg~~~~~~~~~y   36 (44)
T PHA00616          1 MYQCLRC-------GGIFRKKKEVIEHLLSVHKQNKLTLEYFY   36 (44)
T ss_pred             CCccchh-------hHHHhhHHHHHHHHHHhcCCCccceeEEE
Confidence            3566666       66666666666666666666666665433

>PHA00732 hypothetical protein

Probab=97.68  E-value=2.2e-05  Score=63.46  Aligned_cols=45  Identities=27%  Similarity=0.402  Sum_probs=27.4

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhh-ccccccccccccccccCChhHhhhhhcc
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCR-KHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~-Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +|.|..|       ++.|.....|+.|++. |.+   +.|++|++.|.   .|..|.++
T Consensus         1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPIC-------GFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCC-------CCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence            3566666       6666666666666663 432   46666666665   35566654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.56  E-value=2.4e-05  Score=77.29  Aligned_cols=50  Identities=28%  Similarity=0.624  Sum_probs=35.1

Q ss_pred             cccccccc--cccccCChhHhhhhhcc-c-------------------CCcceecC-CCCcccChhHHHHHHH
Q 011807          155 ERKWKCEK--CSKVYAVQSDWKAHSKT-C-------------------GTREYRCD-CGTLFSRKDSFITHRA  204 (477)
Q Consensus       155 ekpf~C~~--C~K~F~~~s~L~~H~r~-~-------------------gekpy~C~-Cgk~F~~~~~L~~H~~  204 (477)
                      +|||+|++  |.|.|+....|+.|+.- |                   ..|||+|+ |+|+|.....|+-|++
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            46666655  66666666666666543 3                   24888998 9999888888888764

>PHA00732 hypothetical protein

Probab=97.41  E-value=0.00014  Score=58.87  Aligned_cols=48  Identities=23%  Similarity=0.436  Sum_probs=40.2

Q ss_pred             ceecCCCCccccChhHHHHHHhh-cCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRG-HNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~-H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      +|.|.+|++.|.+...|..|++. |.                 ++.|+.|       ++.|.   .|..|++.+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~-----------------~~~C~~C-------gKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT-----------------LTKCPVC-------NKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC-----------------CCccCCC-------CCEeC---ChhhhhcccCC
Confidence            58999999999999999999985 53                 3589999       99997   58889866553

>PHA00616 hypothetical protein

Probab=97.30  E-value=5.8e-05  Score=53.69  Aligned_cols=32  Identities=9%  Similarity=0.369  Sum_probs=30.6

Q ss_pred             cccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      ||+|..||+.|..+++|.+|++. |+++++.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            69999999999999999999999 999999986

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.17  E-value=0.00046  Score=51.61  Aligned_cols=52  Identities=27%  Similarity=0.515  Sum_probs=33.5

Q ss_pred             ceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH  153 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Ht  153 (477)
                      .|.|++|++. .+...|..|....+.            ...+.+.|++|       ...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~------------~~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHR------------SESKNVVCPIC-------SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCc------------CCCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence            4788888884 456778888665441            13456888888       55433  36777776654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.13  E-value=0.00026  Score=43.14  Aligned_cols=23  Identities=39%  Similarity=0.895  Sum_probs=21.6

Q ss_pred             eecCCCCccccChhHHHHHHhhc
Q 011807           81 FVCEVCNKGFQRDQNLQLHRRGH  103 (477)
Q Consensus        81 ~~C~~Cgk~F~~~~~L~~H~r~H  103 (477)
                      |+|++|++.|.+...|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.77  E-value=0.00096  Score=40.57  Aligned_cols=20  Identities=40%  Similarity=0.906  Sum_probs=11.2

Q ss_pred             eecC-CCCcccChhHHHHHHH
Q 011807          185 YRCD-CGTLFSRKDSFITHRA  204 (477)
Q Consensus       185 y~C~-Cgk~F~~~~~L~~H~~  204 (477)
                      |+|+ |++.|.+...|++|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            4555 5555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.64  E-value=0.0014  Score=49.00  Aligned_cols=47  Identities=19%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             ccCCCCCCCCCCCCCcccCchhhhhhhhhcc-cc-ccccccccccccCChhHhhhhhcc
Q 011807          123 YVCPEPSCVHHHPSRALGDLTGIKKHFCRKH-GE-RKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       123 ~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Ht-ge-kpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |.|++|       ++ ..+...|..|....+ .+ +.+.|++|...+.  .+|..|+..
T Consensus         3 f~CP~C-------~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYC-------GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             cCCCCC-------CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            556665       55 233455666654422 22 3456666665433  255555554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.55  E-value=0.0017  Score=39.30  Aligned_cols=24  Identities=38%  Similarity=0.888  Sum_probs=20.3

Q ss_pred             eecCCCCccccChhHHHHHHhhcC
Q 011807           81 FVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        81 ~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |.|++|++.|.+...|..|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998864

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.50  E-value=0.0012  Score=54.68  Aligned_cols=72  Identities=18%  Similarity=0.450  Sum_probs=17.7

Q ss_pred             ecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccc
Q 011807           82 VCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCE  161 (477)
Q Consensus        82 ~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~  161 (477)
                      +|..|+..|.....|..|+...+              +-.   ...        ...+.....+..+.+... ...|.|.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H--------------~~~---~~~--------~~~l~~~~~~~~~~~~~~-~~~~~C~   54 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKH--------------GFD---IPD--------QKYLVDPNRLLNYLRKKV-KESFRCP   54 (100)
T ss_dssp             --------------------------------------------------------------------------SSEEBS
T ss_pred             Ccccccccccccccccccccccc--------------ccc---ccc--------cccccccccccccccccc-CCCCCCC
Confidence            48889999988888888886554              100   000        111222333333333221 2257788


Q ss_pred             ccccccCChhHhhhhhcc
Q 011807          162 KCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       162 ~C~K~F~~~s~L~~H~r~  179 (477)
                      +|++.|.....|..|++.
T Consensus        55 ~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   55 YCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SSS-EESSHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHcC
Confidence            888888888888888776

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.44  E-value=0.0021  Score=40.69  Aligned_cols=25  Identities=36%  Similarity=0.721  Sum_probs=23.5

Q ss_pred             ceecCCCCccccChhHHHHHHhhcC
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +|+|.+|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5899999999999999999999885

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.0071  Score=66.51  Aligned_cols=146  Identities=12%  Similarity=0.171  Sum_probs=85.8

Q ss_pred             eecCCCCccc---------------cChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhh
Q 011807           81 FVCEVCNKGF---------------QRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGI  145 (477)
Q Consensus        81 ~~C~~Cgk~F---------------~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L  145 (477)
                      +.|.+|.+.|               .+...|+.|++.-+..+.|..|..    ..+.|.|+         .|.| ....|
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~~~~c~lC~~----~~kif~~e---------~k~Y-t~~el  165 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHKLHLCSLCLQ----NLKIFINE---------RKLY-TRAEL  165 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhhhhccccccc----cceeeeee---------eehe-hHHHH
Confidence            5566666665               377889999965543333333321    22333331         3333 45667


Q ss_pred             hhhhhhcc-ccc----cccccccccccCChhHhhhhhcccCCcceec---C-CCCcccChhHHHHHHHH----hh-----
Q 011807          146 KKHFCRKH-GER----KWKCEKCSKVYAVQSDWKAHSKTCGTREYRC---D-CGTLFSRKDSFITHRAF----CD-----  207 (477)
Q Consensus       146 ~~H~r~Ht-gek----pf~C~~C~K~F~~~s~L~~H~r~~gekpy~C---~-Cgk~F~~~~~L~~H~~~----C~-----  207 (477)
                      ..|+..-- +++    .-.|..|...|-....|.+|++.+.+--..|   + +..-|.....|..|-+.    |.     
T Consensus       166 ~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE~~~C~  245 (669)
T KOG2231|consen  166 NLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCEEEFCR  245 (669)
T ss_pred             HHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcCccccccccc
Confidence            77765421 222    2579999999999999999999832333344   2 56678889999999984    33     


Q ss_pred             -hhhcChHHHHHHHHHhc-cCCCCCcccCC--CCCCC
Q 011807          208 -ALAEESARLSANQLATT-INTNGHPLHIA--SQNHS  240 (477)
Q Consensus       208 -k~f~~~~~L~~H~~~h~-~~~~~k~~~C~--~C~~~  240 (477)
                       +.|.....+..+++.|. .+..++.|.|.  .-|+.
T Consensus       246 ~~~f~~~~~~ei~lk~~~~~~~~e~~~~~~~~r~Gr~  282 (669)
T KOG2231|consen  246 TKKFYVAFELEIELKAHNRFIQHEKCYICRPSRPGRP  282 (669)
T ss_pred             cceeeehhHHHHHHHhhccccchheeccCCcccCCCC
Confidence             23344434444444332 23446666664  44444

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.20  E-value=0.0051  Score=63.53  Aligned_cols=125  Identities=18%  Similarity=0.248  Sum_probs=92.6

Q ss_pred             CceecCCCCccccChhHHHHHHh--hcCCCcccccccccccccc--CcccCC--CCCCCCCCCCCcccCchhhhhhhhhc
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRR--GHNLPWKLKQRSNKDIIKK--KAYVCP--EPSCVHHHPSRALGDLTGIKKHFCRK  152 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r--~H~~p~~c~~~~~~~~~~~--k~~~C~--~C~C~~~~~~k~F~~~~~L~~H~r~H  152 (477)
                      .++.|..|.+.|.....|..|.+  .|.              .+  +++.|+  .|       ++.|.+...+..|...|
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~--------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~  346 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS--------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLH  346 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc--------------cccCCceeeeccCC-------CccccccccccCCcccc
Confidence            47899999999999999999999  676              67  899998  67       89999999999999999


Q ss_pred             cccccccccc--cccccCChhHhh-----hhhcc-cCCcceecC---CCCcccChhHHHHHHHH-------------hhh
Q 011807          153 HGERKWKCEK--CSKVYAVQSDWK-----AHSKT-CGTREYRCD---CGTLFSRKDSFITHRAF-------------CDA  208 (477)
Q Consensus       153 tgekpf~C~~--C~K~F~~~s~L~-----~H~r~-~gekpy~C~---Cgk~F~~~~~L~~H~~~-------------C~k  208 (477)
                      ++.++++|..  |.+.+.....-.     ..... ...+.+.|.   |-..+.+...+..|...             |.+
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (467)
T COG5048         347 TSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSK  426 (467)
T ss_pred             cCCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchh
Confidence            9988888754  666655544421     11112 455667774   77777776666666542             777


Q ss_pred             hhcChHHHHHHHHHhc
Q 011807          209 LAEESARLSANQLATT  224 (477)
Q Consensus       209 ~f~~~~~L~~H~~~h~  224 (477)
                      .|.....+..|++.+.
T Consensus       427 ~~~~~~~~~~~~~~~~  442 (467)
T COG5048         427 SFNRHYNLIPHKKIHT  442 (467)
T ss_pred             hccCcccccccccccc
Confidence            7777777777776664

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.06  E-value=0.0039  Score=51.56  Aligned_cols=71  Identities=15%  Similarity=0.275  Sum_probs=19.8

Q ss_pred             cCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcccCCcceecC-CCCcccChhHHHHH
Q 011807          124 VCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD-CGTLFSRKDSFITH  202 (477)
Q Consensus       124 ~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H  202 (477)
                      +|..|       +..|.....|..|+...++-..   . ..+.+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus         1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFC-------DESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Ccccc-------cccccccccccccccccccccc---c-cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            47777       8999999999999976665321   1 12222344445555544223479999 99999999999999


Q ss_pred             HHH
Q 011807          203 RAF  205 (477)
Q Consensus       203 ~~~  205 (477)
                      ++.
T Consensus        70 m~~   72 (100)
T PF12756_consen   70 MRS   72 (100)
T ss_dssp             HHH
T ss_pred             HcC
Confidence            975

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.02  E-value=0.0028  Score=38.36  Aligned_cols=19  Identities=26%  Similarity=0.716  Sum_probs=7.1

Q ss_pred             cccccccccCChhHhhhhh
Q 011807          159 KCEKCSKVYAVQSDWKAHS  177 (477)
Q Consensus       159 ~C~~C~K~F~~~s~L~~H~  177 (477)
                      +|++|++.|.+...|+.|+
T Consensus         2 ~C~~C~~~~~~~~~l~~H~   20 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHM   20 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHH
T ss_pred             CCcCCCCcCCcHHHHHHHH
Confidence            3444444444444444443

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.60  E-value=0.0059  Score=38.56  Aligned_cols=23  Identities=22%  Similarity=0.761  Sum_probs=13.2

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +|+|.+|++.|.....|..|++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            35556666666666666665554

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.27  E-value=0.0088  Score=43.74  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             ccccccccccccccCChhHhhhhhcc-cCCcc
Q 011807          154 GERKWKCEKCSKVYAVQSDWKAHSKT-CGTRE  184 (477)
Q Consensus       154 gekpf~C~~C~K~F~~~s~L~~H~r~-~gekp  184 (477)
                      .+.|-.|++|+..+....+|++|+.+ |+.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            46778888888888888888888887 77765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.11  E-value=0.014  Score=35.58  Aligned_cols=24  Identities=33%  Similarity=0.681  Sum_probs=22.0

Q ss_pred             eecCCCCccccChhHHHHHHhhcC
Q 011807           81 FVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        81 ~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |+|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            679999999999999999999774

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.07  E-value=0.058  Score=55.60  Aligned_cols=143  Identities=22%  Similarity=0.249  Sum_probs=93.1

Q ss_pred             cCCCCCCCCCCchhhhhcCcc--ccCCC--CceecC--CCCccccChhHHHHHHhhcCC--Ccccccc--ccc-------
Q 011807           53 KKRSLPGNPDPDAEVIALSPK--TLLAT--NRFVCE--VCNKGFQRDQNLQLHRRGHNL--PWKLKQR--SNK-------  115 (477)
Q Consensus        53 kk~~~~~~~~~~~~~~~~~~~--~~~~~--k~~~C~--~Cgk~F~~~~~L~~H~r~H~~--p~~c~~~--~~~-------  115 (477)
                      ..+..+.........+..+.+  .|..+  +++.|.  .|++.|.+...+..|...|..  +.++...  ...       
T Consensus       290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (467)
T COG5048         290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNN  369 (467)
T ss_pred             CCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCC
Confidence            444555556666677777777  78988  999999  799999999999999999972  2222211  000       


Q ss_pred             ----------cccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc--cccccccccccCChhHhhhhhcc-cCC
Q 011807          116 ----------DIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER--KWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       116 ----------~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek--pf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                                .....+.+.|..-.|     .+.+.....+..|...|...+  .+.|..|.+.|.....+..|++. ...
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (467)
T COG5048         370 EPPQSLQQYKDLKNDKKSETLSNSC-----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNH  444 (467)
T ss_pred             CCccchhhccCccCCccccccccch-----hhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccC
Confidence                      001223344443323     667777777777777777666  45667788888888888888888 444


Q ss_pred             cceecCCCCcccChhHHH
Q 011807          183 REYRCDCGTLFSRKDSFI  200 (477)
Q Consensus       183 kpy~C~Cgk~F~~~~~L~  200 (477)
                      .++.|.+-+.|.....+.
T Consensus       445 ~~~~~~~~~~~~~~~~~~  462 (467)
T COG5048         445 APLLCSILKSFRRDLDLS  462 (467)
T ss_pred             Cceeeccccccchhhhhh
Confidence            444444545555444443

>PRK04860 hypothetical protein; Provisional

Probab=94.69  E-value=0.012  Score=54.06  Aligned_cols=36  Identities=31%  Similarity=0.766  Sum_probs=26.4

Q ss_pred             cccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccCh
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRK  196 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  196 (477)
                      +|.|. |++   ....+++|.++ .++++|+|. |++.|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            57787 776   55667778777 777788887 88777654

>PRK04860 hypothetical protein; Provisional

Probab=94.66  E-value=0.012  Score=54.01  Aligned_cols=40  Identities=18%  Similarity=0.486  Sum_probs=34.2

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChh
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQS  171 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s  171 (477)
                      -+|.|. |       ++   ....+.+|.++|+++++|+|..|++.|....
T Consensus       118 ~~Y~C~-C-------~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-C-------QE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-C-------CC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            469997 7       65   6788999999999999999999999887543

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.31  E-value=0.041  Score=60.67  Aligned_cols=95  Identities=15%  Similarity=0.292  Sum_probs=65.9

Q ss_pred             CcccCchhhhhhhhhcccccccccccc---------ccccCChhHhhhhhcc--cCCcc----eecC-CCCcccChhHHH
Q 011807          137 RALGDLTGIKKHFCRKHGERKWKCEKC---------SKVYAVQSDWKAHSKT--CGTRE----YRCD-CGTLFSRKDSFI  200 (477)
Q Consensus       137 k~F~~~~~L~~H~r~Htgekpf~C~~C---------~K~F~~~s~L~~H~r~--~gekp----y~C~-Cgk~F~~~~~L~  200 (477)
                      -.|.....|+.|++.-+  +.+.|.+|         .....++..|..|++.  .+++-    -.|+ |...|.....|.
T Consensus       122 ~~~~s~~~Lk~H~~~~H--~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~  199 (669)
T KOG2231|consen  122 TEFKSVENLKNHMRDQH--KLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELY  199 (669)
T ss_pred             cchhHHHHHHHHHHHhh--hhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHH
Confidence            34557788999995433  23555554         2223357788999887  53433    3589 999999999999


Q ss_pred             HHHHH-------h------hhhhcChHHHHHHHHHhccCCCCCcccCC--CCCCC
Q 011807          201 THRAF-------C------DALAEESARLSANQLATTINTNGHPLHIA--SQNHS  240 (477)
Q Consensus       201 ~H~~~-------C------~k~f~~~~~L~~H~~~h~~~~~~k~~~C~--~C~~~  240 (477)
                      +|++.       |      ..-|.....|..|.|.+       -|.|+  .|.-.
T Consensus       200 rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~-------HflCE~~~C~~~  247 (669)
T KOG2231|consen  200 RHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKG-------HFLCEEEFCRTK  247 (669)
T ss_pred             HhhccceeheeecCcccccchhcccchHHHHHhhhc-------Cccccccccccc
Confidence            99994       4      34578888999998765       46676  55444

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.24  E-value=0.029  Score=34.63  Aligned_cols=23  Identities=39%  Similarity=0.967  Sum_probs=21.3

Q ss_pred             eecCCCCccccChhHHHHHHhhc
Q 011807           81 FVCEVCNKGFQRDQNLQLHRRGH  103 (477)
Q Consensus        81 ~~C~~Cgk~F~~~~~L~~H~r~H  103 (477)
                      |.|.+|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999865

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.11  E-value=0.066  Score=54.03  Aligned_cols=134  Identities=15%  Similarity=0.152  Sum_probs=87.1

Q ss_pred             ceecCC--CCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccc
Q 011807           80 RFVCEV--CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERK  157 (477)
Q Consensus        80 ~~~C~~--Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekp  157 (477)
                      .|.|+.  |......-..|..|.+..+..+-|.+|.    ..++.|.|+.          ..-++..|..|...-..+.-
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~----~nKk~F~~E~----------~lF~~~~Lr~H~~~G~~e~G  216 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECI----GNKKDFWNEI----------RLFRSSTLRDHKNGGLEEEG  216 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhh----cCcccCccce----------eeeecccccccccCCccccC
Confidence            477875  6655555677888888766444444442    1334555543          23345667777655433323


Q ss_pred             ----ccccccccccCChhHhhhhhcccCCcceecC-C----CCcccChhHHHHHHHH---------hh----hhhcChHH
Q 011807          158 ----WKCEKCSKVYAVQSDWKAHSKTCGTREYRCD-C----GTLFSRKDSFITHRAF---------CD----ALAEESAR  215 (477)
Q Consensus       158 ----f~C~~C~K~F~~~s~L~~H~r~~gekpy~C~-C----gk~F~~~~~L~~H~~~---------C~----k~f~~~~~  215 (477)
                          -.|..|.+.|.....|.+|+|.-.|+-|.|+ =    .+-|....+|..|-+.         |-    ..|.....
T Consensus       217 FKGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~~~~e  296 (493)
T COG5236         217 FKGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFPYHTE  296 (493)
T ss_pred             cCCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEecCcEEEeccHHH
Confidence                3699999999999999999998446667775 2    2348888899999883         32    34788888


Q ss_pred             HHHHH-HHhccCC
Q 011807          216 LSANQ-LATTINT  227 (477)
Q Consensus       216 L~~H~-~~h~~~~  227 (477)
                      |..|+ +.|....
T Consensus       297 l~~h~~~~h~~~~  309 (493)
T COG5236         297 LLEHLTRFHKVNA  309 (493)
T ss_pred             HHHHHHHHhhccc
Confidence            89995 4454443

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.46  E-value=0.058  Score=62.93  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=41.0

Q ss_pred             CCCceecCCCCccccChhHHHHHHhhcC-CC--ccccccc--------cccccccCcccCCCCCCCCCCCCCcccCchhh
Q 011807           77 ATNRFVCEVCNKGFQRDQNLQLHRRGHN-LP--WKLKQRS--------NKDIIKKKAYVCPEPSCVHHHPSRALGDLTGI  145 (477)
Q Consensus        77 ~~k~~~C~~Cgk~F~~~~~L~~H~r~H~-~p--~~c~~~~--------~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L  145 (477)
                      -.+.|+|+.|+..|+....|..|+|.-+ ..  -.|+...        .....+.++|.|..|       ...+..+.+|
T Consensus       462 ~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C-------~~stttng~L  534 (1406)
T KOG1146|consen  462 FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRAC-------NYSTTTNGNL  534 (1406)
T ss_pred             ccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceee-------eeeeecchHH
Confidence            3478999999999999999999999743 11  1111100        001124456666666       5666666666


Q ss_pred             hhhhh
Q 011807          146 KKHFC  150 (477)
Q Consensus       146 ~~H~r  150 (477)
                      .+|+.
T Consensus       535 sihlq  539 (1406)
T KOG1146|consen  535 SIHLQ  539 (1406)
T ss_pred             HHHHH
Confidence            66654

>smart00355 ZnF_C2H2 zinc finger

Probab=93.32  E-value=0.044  Score=33.29  Aligned_cols=22  Identities=36%  Similarity=0.862  Sum_probs=12.4

Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |+|..|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH
Confidence            3455566666555555555543

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.18  E-value=0.045  Score=40.12  Aligned_cols=33  Identities=12%  Similarity=0.311  Sum_probs=24.6

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccc
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERK  157 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekp  157 (477)
                      ..+.|..|++|       +..+....+|++|+.++++.||
T Consensus        20 ~S~~PatCP~C-------~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPIC-------GAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT---------EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcc-------hhhccchhhHHHHHHHHhcccC
Confidence            36789999999       9999999999999999988776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.14  E-value=0.06  Score=34.09  Aligned_cols=22  Identities=27%  Similarity=0.753  Sum_probs=18.3

Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |.|..|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.05  E-value=0.069  Score=33.42  Aligned_cols=21  Identities=33%  Similarity=0.852  Sum_probs=15.5

Q ss_pred             eecC-CCCcccChhHHHHHHHHh
Q 011807          185 YRCD-CGTLFSRKDSFITHRAFC  206 (477)
Q Consensus       185 y~C~-Cgk~F~~~~~L~~H~~~C  206 (477)
                      ..|. |++.| ..+.|.+|+++|
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHhc
Confidence            3577 88888 666777787776

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=92.53  E-value=0.057  Score=33.28  Aligned_cols=21  Identities=19%  Similarity=0.713  Sum_probs=13.0

Q ss_pred             ccccccccccCChhHhhhhhc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSK  178 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r  178 (477)
                      |.|.+|++.|.....|+.|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            456666666666666666654

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.34  E-value=0.11  Score=52.39  Aligned_cols=93  Identities=27%  Similarity=0.544  Sum_probs=67.7

Q ss_pred             ccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccc---cccC------ChhHhhhhhcc-cCCcce----ecC
Q 011807          123 YVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCS---KVYA------VQSDWKAHSKT-CGTREY----RCD  188 (477)
Q Consensus       123 ~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~---K~F~------~~s~L~~H~r~-~gekpy----~C~  188 (477)
                      |.|+.-.|     ..++.....|+.|.+..++.  +.|.+|-   |.|.      ++..|+.|... -.+.-|    .|.
T Consensus       152 F~CP~skc-----~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~  224 (493)
T COG5236         152 FKCPKSKC-----HRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCI  224 (493)
T ss_pred             hcCCchhh-----hhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhh
Confidence            77876544     67777788999999876653  7788873   3444      45678888876 333233    599


Q ss_pred             -CCCcccChhHHHHHHH-------Hhhhh-------hcChHHHHHHHHH
Q 011807          189 -CGTLFSRKDSFITHRA-------FCDAL-------AEESARLSANQLA  222 (477)
Q Consensus       189 -Cgk~F~~~~~L~~H~~-------~C~k~-------f~~~~~L~~H~~~  222 (477)
                       |.+.|-.-+.|.+|++       +|++.       |+.-..|.+|.+.
T Consensus       225 FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~  273 (493)
T COG5236         225 FCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRN  273 (493)
T ss_pred             hccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhc
Confidence             9999999999999998       47765       6666778888643

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.84  E-value=0.062  Score=34.01  Aligned_cols=23  Identities=30%  Similarity=0.813  Sum_probs=20.9

Q ss_pred             eecCCCCccccChhHHHHHHhhc
Q 011807           81 FVCEVCNKGFQRDQNLQLHRRGH  103 (477)
Q Consensus        81 ~~C~~Cgk~F~~~~~L~~H~r~H  103 (477)
                      |.|..|++.|.+...|..|++..
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            78999999999999999998753

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.71  E-value=0.11  Score=49.03  Aligned_cols=79  Identities=22%  Similarity=0.503  Sum_probs=62.6

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-c----------CCcceec
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-C----------GTREYRC  187 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~----------gekpy~C  187 (477)
                      ....|.|++-||     -+.|........|...-++   -.|.+|.+.|.+..-|..|+-- |          |..-|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            446788999877     7888888888888766554   3799999999999999999865 4          4456889


Q ss_pred             --C-CCCcccChhHHHHHHHH
Q 011807          188 --D-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       188 --~-Cgk~F~~~~~L~~H~~~  205 (477)
                        + |+..|.+...-+.|+-.
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIR  168 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHH
Confidence              4 99999888888877754

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=88.76  E-value=0.52  Score=47.78  Aligned_cols=22  Identities=23%  Similarity=0.614  Sum_probs=15.9

Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +.|-.|.|.|..+..|+.|||.
T Consensus       196 ~~CLyCekifrdkntLkeHMrk  217 (423)
T KOG2482|consen  196 LRCLYCEKIFRDKNTLKEHMRK  217 (423)
T ss_pred             heeeeeccccCCcHHHHHHHHh
Confidence            6677777777777777777765

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=88.51  E-value=0.19  Score=30.73  Aligned_cols=8  Identities=38%  Similarity=0.488  Sum_probs=3.0

Q ss_pred             hhHhhhhh
Q 011807          170 QSDWKAHS  177 (477)
Q Consensus       170 ~s~L~~H~  177 (477)
                      ...|++|+
T Consensus        12 ~~~l~~H~   19 (24)
T PF13909_consen   12 KSNLKRHL   19 (24)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=88.20  E-value=0.2  Score=58.70  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=51.7

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccCh
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRK  196 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  196 (477)
                      ..|.|+|+.|       +..|+....|..|+|..+-+-.-  .+|. .+.....+.+=... .+.++|.|. |...|..+
T Consensus       462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskhp~~~~--~~c~-~gq~~~~~arg~~~~~~~~p~~C~~C~~stttn  531 (1406)
T KOG1146|consen  462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKHPESQS--AYCK-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTN  531 (1406)
T ss_pred             ccccccCCcc-------chhhhhHHHhhhcccccccccch--hHhH-hccccccccccccccCCCCcccceeeeeeeecc
Confidence            4588899998       88899999999999874432111  2331 12211111111111 456899999 99999999


Q ss_pred             hHHHHHHHHh
Q 011807          197 DSFITHRAFC  206 (477)
Q Consensus       197 ~~L~~H~~~C  206 (477)
                      .+|.+|+..|
T Consensus       532 g~LsihlqS~  541 (1406)
T KOG1146|consen  532 GNLSIHLQSD  541 (1406)
T ss_pred             hHHHHHHHHH
Confidence            9999999864

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=87.47  E-value=0.35  Score=29.49  Aligned_cols=23  Identities=26%  Similarity=0.603  Sum_probs=18.4

Q ss_pred             eecCCCCccccChhHHHHHHhhcC
Q 011807           81 FVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        81 ~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |+|..|..... ...|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            78999998887 889999998864

>smart00451 ZnF_U1 U1-like zinc finger

Probab=83.99  E-value=0.6  Score=30.98  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=15.6

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            36677777777777777777654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=83.82  E-value=0.87  Score=30.17  Aligned_cols=24  Identities=29%  Similarity=0.782  Sum_probs=21.3

Q ss_pred             ceecCCCCccccChhHHHHHHhhc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGH  103 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H  103 (477)
                      +|.|++|++.|.+...+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            588999999999999999998753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=83.04  E-value=0.34  Score=46.67  Aligned_cols=43  Identities=21%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhc
Q 011807          125 CPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSK  178 (477)
Q Consensus       125 C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r  178 (477)
                      |.+|       ++.|.+..-|..|++.    |.|+|.+|.|..-+--.|..|-.
T Consensus        13 cwyc-------nrefddekiliqhqka----khfkchichkkl~sgpglsihcm   55 (341)
T KOG2893|consen   13 CWYC-------NREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCM   55 (341)
T ss_pred             eeec-------ccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehh
Confidence            7787       8888888888887764    55899999887777667766643

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=82.56  E-value=1  Score=28.12  Aligned_cols=21  Identities=24%  Similarity=0.665  Sum_probs=17.6

Q ss_pred             eecCCCCccccChhHHHHHHhh
Q 011807           81 FVCEVCNKGFQRDQNLQLHRRG  102 (477)
Q Consensus        81 ~~C~~Cgk~F~~~~~L~~H~r~  102 (477)
                      ..|+.||+.| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 56789999864

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=80.50  E-value=0.94  Score=45.95  Aligned_cols=94  Identities=14%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhh--cccccc--------ccc--cccccccCCh-hHhh-----hhhcc----
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCR--KHGERK--------WKC--EKCSKVYAVQ-SDWK-----AHSKT----  179 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~--Htgekp--------f~C--~~C~K~F~~~-s~L~-----~H~r~----  179 (477)
                      .+.|-+|       .+.|..+..|+.|||.  |..-.|        |.=  ..-+|+.... +.+.     .+..+    
T Consensus       195 r~~CLyC-------ekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~w  267 (423)
T KOG2482|consen  195 RLRCLYC-------EKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTW  267 (423)
T ss_pred             hheeeee-------ccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccch
Confidence            4789998       9999999999999985  332221        111  1123333211 1110     01100    


Q ss_pred             -----cCCcc--eecC-CCCcccChhHHHHHHHH--------------------------------------hhhhhcCh
Q 011807          180 -----CGTRE--YRCD-CGTLFSRKDSFITHRAF--------------------------------------CDALAEES  213 (477)
Q Consensus       180 -----~gekp--y~C~-Cgk~F~~~~~L~~H~~~--------------------------------------C~k~f~~~  213 (477)
                           .+..+  .+|- |....-+...|..|+++                                      |+..|...
T Consensus       268 sDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e  347 (423)
T KOG2482|consen  268 SDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKE  347 (423)
T ss_pred             hhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCc
Confidence                 01222  5788 88888888888888872                                      88899999


Q ss_pred             HHHHHHHHH
Q 011807          214 ARLSANQLA  222 (477)
Q Consensus       214 ~~L~~H~~~  222 (477)
                      ..|..||..
T Consensus       348 ~~l~~hm~e  356 (423)
T KOG2482|consen  348 PGLLIHMVE  356 (423)
T ss_pred             chhhhhccc
Confidence            999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	477
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-07
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 23/152 (15%)
Query: 68  IALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGH--NLPWK-------LKQRSN---- 114
           +A   +T      + C  C K F   ++L  H+R H    P+K         QR+N    
Sbjct: 37  LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Query: 115 -KDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDW 173
            +    +K Y CPE  C      ++   L  ++ H     GE+ +KC +C K ++ + + 
Sbjct: 97  QRTHTGEKPYACPE--C-----GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL 149
Query: 174 KAHSKT-CGTREYRC-DCGTLFSRKDSFITHR 203
             H +T  G + Y+C +CG  FSR+D+   H+
Sbjct: 150 HTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT- 179
           K Y CPE  C      ++    + ++KH     GE+ +KC +C K ++  SD + H +T 
Sbjct: 3   KPYKCPE--C-----GKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 180 CGTREYRC-DCGTLFSRKDSFITHR 203
            G + Y+C +CG  FSR D    H+
Sbjct: 56  TGEKPYKCPECGKSFSRSDHLSRHQ 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	477
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	2e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-04
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	4e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 27/129 (20%)

Query: 81  FVCE--VCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRA 138
           F+C    CNK + +  +LQ+H R H                +K Y C    C      R 
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHT--------------GEKPYQCDFKDC-----ERR 47

Query: 139 LGDLTGIKKHFCRKH-GERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC---DCGTLF 193
                 +K+H  R+H G + ++C+ C + ++     K H++T  G + + C    C   F
Sbjct: 48  FSRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKF 106

Query: 194 SRKDSFITH 202
           +R D  + H
Sbjct: 107 ARSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH-GERKWKCEK--CSKVYAVQSDWKAHS 177
           + ++C  P C     ++    L+ ++ H  RKH GE+ ++C+   C + ++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 178 KT-CGTREYRCD-CGTLFSRKDSFITHR 203
           +   G + ++C  C   FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 38/151 (25%)

Query: 83  CEVCNKGFQRDQNLQLHRRGH--------------NLPWKLKQRSNKDIIKK-------- 120
            + C++ F   + L  H                      +L+    + ++          
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65

Query: 121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH-GERKWKCE--KCSKVYAVQSDWKAHS 177
           K + C    C      ++   L  +K H  R H GE+ + CE   CSK ++  SD   H 
Sbjct: 66  KPHKCTFEGC-----RKSYSRLENLKTHL-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQ 119

Query: 178 K---TCGTREYRCD---CGTLFSRKDSFITH 202
               +   + Y C    C   ++   S   H
Sbjct: 120 NRTHS-NEKPYVCKLPGCTKRYTDPSSLRKH 149

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 24/104 (23%)

Query: 81  FVC--EVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRA 138
             C  E C K + R +NL+ H R H                +K Y+C    C     S+A
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSHT--------------GEKPYMCEHEGC-----SKA 108

Query: 139 LGDLTGIKKHFCRKH-GERKWKCEK--CSKVYAVQSDWKAHSKT 179
             + +   KH  R H  E+ + C+   C+K Y   S  + H KT
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 56/386 (14%), Positives = 103/386 (26%), Gaps = 111/386 (28%)

Query: 73  KTLLATNRFVCEVC-NKGFQRDQNLQLHRRGHNLPW-KLKQ-RSNKDIIKKKAYVC---- 125
           KT +A      +VC +   Q   + ++        W  LK   S + +++    +     
Sbjct: 163 KTWVAL-----DVCLSYKVQCKMDFKIF-------WLNLKNCNSPETVLEMLQKLLYQID 210

Query: 126 PEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC----SKVYAVQSDWKAHSKTCG 181
           P  +    H S     +  I+    R    + ++   C      V   +  W A      
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLVLLNVQNAK-AWNA------ 261

Query: 182 TREYRCDCGTLFSRKDSFITHRAFCDALA------------------EESARLSANQLAT 223
              +   C  L + +   +T     D L+                  +E   L    L  
Sbjct: 262 ---FNLSCKILLTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 224 TINT------NGHPLHIASQNHSSSSLFPFTTTHIALTPWDPPQNPNPNRNNPNNDPHPN 277
                       +P  +        S+    +    L  WD  ++ N ++     +   N
Sbjct: 314 RPQDLPREVLTTNPRRL--------SIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 278 PLYIKSETHHFQ----------IPPP-LS---SSQYFQEPQAVAAT--TKALI------- 314
            L        F           IP   LS         +   V       +L+       
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 315 TSPYQDLHMRTQPSLNASATSAHHMSATALLQKAATVGSATAAQQ-----VHQSMGHHMT 369
           T     +++  +  L      A H S         T  S            +  +GHH+ 
Sbjct: 425 TISIPSIYLELKVKLENEY--ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 370 TTQLNMGELAAFNSVSHISPDAYLGF 395
             + +   +  F  V       +L F
Sbjct: 483 NIE-HPERMTLFRMV-------FLDF 500

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 151 RKH-GERKWKCEKCSKVYAVQSDWKAHSKTC---GTREYRC-DCGTLFSRKDSFITHR 203
               GE  ++C+ CS+VY   S++  H  T      + Y C  C   F+RKD+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 112 RSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH-GERKWKC--EKCSKVYA 168
            S  D+ K++ + C  P C     ++     + +K H  R H GE+ +KC  E C   +A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 169 VQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHR 203
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 23/102 (22%)

Query: 81  FVCEV--CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRA 138
             C+   C K + +  +L+ H R H                +K Y C    C        
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHT--------------GEKPYKCTWEGC-----DWR 56

Query: 139 LGDLTGIKKHFCRKH-GERKWKCEKCSKVYAVQSDWKAHSKT 179
                 + +H+ RKH G + ++C  C++ ++       H K 
Sbjct: 57  FARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 44.0 bits (105), Expect = 9e-06
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHS 177
           ++ +   CP   C     ++   D + ++KH    HG R   C +C K +   S  K H 
Sbjct: 1   MEPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQ 54

Query: 178 KT-CGTREYRC---DCGTLFSRKDSFITH 202
               G + ++C    CG  FS   +  TH
Sbjct: 55  LVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 30/127 (23%)

Query: 83  CEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDL 142
            + C K F+ +  ++ H   H                 + +VC E  C      +A  + 
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG---------------PRVHVCAE--C-----GKAFVES 47

Query: 143 TGIKKHFCRKH-GERKWKC--EKCSKVYAVQSDWKAHSKT-CGTREYRC---DCGTLFSR 195
           + +K+H    H GE+ ++C  E C K +++  + + H +   G R Y C    C   F++
Sbjct: 48  SKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106

Query: 196 KDSFITH 202
             +  +H
Sbjct: 107 STNLKSH 113

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 30/132 (22%), Positives = 39/132 (29%), Gaps = 29/132 (21%)

Query: 81  FVCE--VCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRA 138
           F C+   C KGF    +L  H   H                +K + C    C        
Sbjct: 43  FPCKEEGCEKGFTSLHHLTRHSLTHT--------------GEKNFTCDSDGC-----DLR 83

Query: 139 LGDLTGIKKHFCRKHGERKW--KC--EKCSKVYAVQSDWKAHSKT-CGTREYRC---DCG 190
                 +KKHF R H  +     C  E C K +   +  K H  +      Y C    C 
Sbjct: 84  FTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD 143

Query: 191 TLFSRKDSFITH 202
             FS       H
Sbjct: 144 KRFSLPSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 33/135 (24%)

Query: 80  RFVCEV--CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSR 137
           R++C    C   + ++  LQ H   H                +K + C E  C      +
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKHT--------------GEKPFPCKEEGC-----EK 52

Query: 138 ALGDLTGIKKHFCRKH-GERKWKCE--KCSKVYAVQSDWKAHSKTCGTRE----YRC--- 187
               L  + +H    H GE+ + C+   C   +  +++ K H            Y C   
Sbjct: 53  GFTSLHHLTRHS-LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFE 110

Query: 188 DCGTLFSRKDSFITH 202
           +CG  F + +    H
Sbjct: 111 NCGKAFKKHNQLKVH 125

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 21/97 (21%)

Query: 83  CEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDL 142
            E C K F++   L++H+  H               ++  Y CP   C      +     
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH--------------TQQLPYECPHEGC-----DKRFSLP 46

Query: 143 TGIKKHFCRKH-GERKWKCEKCSKVYAVQSDWKAHSK 178
           + +K+H  + H G    K + CS V    + +  H  
Sbjct: 47  SRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 41.7 bits (99), Expect = 3e-05
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH-GERKWKCEKCSKVYAVQSDWKAHSKT 179
           + Y CP  SC      R       + +H  R H G++ ++C  C + ++       H +T
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 180 -CGTREYRCD-CGTLFSRKDSFITHR 203
             G + + CD CG  F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 22/96 (22%)

Query: 81  FVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALG 140
           F C +C + F R  +L  H R H                +K + C    C      R   
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHT--------------GEKPFACDI--C-----GRKFA 42

Query: 141 DLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAH 176
                K+H            +K  ++ +     +  
Sbjct: 43  RSDERKRHR-DIQHILPILEDKVEELLSKNYHLENE 77

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 154 GERKWKCEKCSKVYAVQSDWKAHSKT----CGTREYRCD-CGTLFSRKDSFITHR 203
           G    +CE C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 142 LTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD-CGTLFSRKDSFI 200
            +G   H   +   R   C+ C          K H   CG R   C  CG     KD   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 201 THRAFCD 207
           TH   C 
Sbjct: 60  THPEVCG 66

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 146 KKHFCRKH-GERKWKCEKCSKVYAVQSDWKAHSKT---CGTREYRCD-CGTLFSRKDSFI 200
                R H GE+ ++C  C   +      K H          ++ C  C T+ +RK    
Sbjct: 4   GSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 201 TH 202
            H
Sbjct: 63  VH 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 151 RKH-GERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRA 204
                    KC +CS   + ++  + H +  C  R ++C+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 106 PWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH-GERKWKCEKCS 164
           P  +    N  + K + Y CP  SC      R       + +H  R H G++ ++C  C 
Sbjct: 3   PHPMNNLLNYVVPKMRPYACPVESC-----DRRFSRSDELTRHI-RIHTGQKPFQCRICM 56

Query: 165 KVYAVQSDWKAHSKT 179
           + ++       H +T
Sbjct: 57  RNFSRSDHLTTHIRT 71

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 24/110 (21%)

Query: 83  CEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDL 142
           C    K F+    L  H R H                +K + CP P C      +     
Sbjct: 65  CPREGKSFKAKYKLVNHIRVHT--------------GEKPFPCPFPGC-----GKIFARS 105

Query: 143 TGIKKHFCRKH-GERKWKC--EKCSKVYAVQSDWKAHSKT-CGTREYRCD 188
             +K H  R H GE+ +KC  E C + +A  SD K H       +     
Sbjct: 106 ENLKIHK-RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 26/132 (19%)

Query: 81  FVCEVCNKGFQRDQNLQLHRRGHNL--PWKLKQRSNKDIIKKKAYVCPEPSCVHHHPS-R 137
              + C++ F     L  H    ++  P            ++  +VC    C     S +
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGP------------EQNNHVCYWEECPREGKSFK 73

Query: 138 ALGDLTGIKKHFCRKH-GERKWKC--EKCSKVYAVQSDWKAHSKT-CGTREYRC---DCG 190
           A   L     H  R H GE+ + C    C K++A   + K H +T  G + ++C    C 
Sbjct: 74  AKYKL---VNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCD 129

Query: 191 TLFSRKDSFITH 202
             F+       H
Sbjct: 130 RRFANSSDRKKH 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	477
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.88
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.82
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.79
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.78
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.72
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.71
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.7
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.69
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.69
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.68
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.65
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.65
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.64
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.64
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.63
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.63
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.62
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.61
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.6
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.6
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.6
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.56
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.55
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.53
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.51
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.51
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.5
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.48
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.45
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.45
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.45
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.42
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.41
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.41
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.39
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.39
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.36
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.35
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.35
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.33
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.33
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.33
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.32
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.31
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.3
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.29
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.27
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.25
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.25
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.24
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.23
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.23
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.2
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.19
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.18
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.17
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.16
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.14
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.11
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.11
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.1
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.1
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.09
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.03
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.02
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.02
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.01
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.01
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.0
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.0
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.99
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.99
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.99
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.97
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.96
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.95
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.95
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.95
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.92
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.91
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.9
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.9
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.9
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.89
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.89
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.88
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.88
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.88
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.87
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.87
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.86
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.85
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.85
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.85
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.84
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.84
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.84
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.84
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.84
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.83
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.83
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.83
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.83
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.83
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.83
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.83
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.81
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.81
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.81
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.81
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.8
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.8
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.8
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.78
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.78
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.78
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.78
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.77
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.76
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.76
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.74
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.74
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.7
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.7
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.7
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.68
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.67
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.67
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.66
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.66
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.64
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.64
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.63
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.63
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.62
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.62
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.61
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.6
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.6
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.59
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.59
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.58
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.58
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.58
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.58
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.57
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.57
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.57
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.56
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.54
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.54
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.54
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.54
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.5
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.49
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.49
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.4
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.39
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.38
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.37
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.29
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.24
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.23
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.1
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.06
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.04
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.04
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.04
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.03
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.03
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.01
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.0
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.0
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.96
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.96
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.96
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.9
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.89
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.88
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.87
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.87
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.85
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.84
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.82
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.79
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.79
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.75
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.73
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.72
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.71
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.69
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.68
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.66
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.65
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.56
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.56
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.55
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.54
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.53
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.53
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.64
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.48
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.48
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.45
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.57
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.42
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.41
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.39
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.39
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.38
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.38
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.37
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.48
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.36
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.36
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.45
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.33
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.31
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.31
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.3
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.3
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.28
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.27
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.34
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.32
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.12
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.04
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.95
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.74
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.44
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.05
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.89
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.67
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.32
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.47
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.44
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.23
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	90.43
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	89.62
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	87.44

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=3e-27  Score=219.47  Aligned_cols=154  Identities=26%  Similarity=0.528  Sum_probs=110.3

Q ss_pred             hhcCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhh
Q 011807           68 IALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKK  147 (477)
Q Consensus        68 ~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~  147 (477)
                      +..+...+.++++|.|.+|++.|.....|..|++.|.              ++++|.|++|       ++.|.....|..
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~   67 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT--------------GEKPYKCPEC-------GKSFSDKKDLTR   67 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC-----------------CCEECTTT-------CCEESSHHHHHH
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcC--------------CCCCccCCCc-------CchhCCHHHHHH
Confidence            4455667777888888888888888888888888887              7788888888       888888888888


Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHH-----------hhhhhcChH
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAF-----------CDALAEESA  214 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~-----------C~k~f~~~~  214 (477)
                      |++.|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.+...|..|+++           |++.|....
T Consensus        68 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~  147 (190)
T 2i13_A           68 HQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED  147 (190)
T ss_dssp             HHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred             HHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHH
Confidence            88888888888888888888888888888888 788888888 88888888888888874           888888888


Q ss_pred             HHHHHHHHhccCCCCCcccCCCCCCCCCCCC
Q 011807          215 RLSANQLATTINTNGHPLHIASQNHSSSSLF  245 (477)
Q Consensus       215 ~L~~H~~~h~~~~~~k~~~C~~C~~~fss~~  245 (477)
                      .|..|+++|   .++++|.|.+|++.|....
T Consensus       148 ~L~~H~~~H---~~~~~~~C~~C~~~f~~~~  175 (190)
T 2i13_A          148 NLHTHQRTH---TGEKPYKCPECGKSFSRRD  175 (190)
T ss_dssp             HHHHHHHHH---HCCCCEECTTTCCEESSHH
T ss_pred             HHHHHHHhc---CCCCCeECCCCCCccCCHH
Confidence            888888876   4678899999988887543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=3.1e-26  Score=212.55  Aligned_cols=158  Identities=25%  Similarity=0.525  Sum_probs=134.0

Q ss_pred             cccCCCCCCCCCCchhhhhcCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCC
Q 011807           51 AKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSC  130 (477)
Q Consensus        51 ~kkk~~~~~~~~~~~~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C  130 (477)
                      +...+..++..+.....+..|.+.|.++++|.|.+|++.|.....|..|++.|.              ++++|.|++|  
T Consensus        20 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C--   83 (190)
T 2i13_A           20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT--------------GEKPYKCPEC--   83 (190)
T ss_dssp             -----------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH--------------CCCCEECTTT--
T ss_pred             CCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC--------------CCCCccCccc--
Confidence            345678889999999999999999999999999999999999999999999997              8899999999  


Q ss_pred             CCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHH---
Q 011807          131 VHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAF---  205 (477)
Q Consensus       131 ~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~---  205 (477)
                           ++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |++.|.+...|+.|+++   
T Consensus        84 -----~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A           84 -----GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             -----CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             -----CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence                 99999999999999999999999999999999999999999999 899999999 99999999999999985   


Q ss_pred             --------hhhhhcChHHHHHHHHHhccCCCCCcc
Q 011807          206 --------CDALAEESARLSANQLATTINTNGHPL  232 (477)
Q Consensus       206 --------C~k~f~~~~~L~~H~~~h~~~~~~k~~  232 (477)
                              |++.|.....|..|+++|   ++++||
T Consensus       159 ~~~~~C~~C~~~f~~~~~L~~H~~~H---~~~k~~  190 (190)
T 2i13_A          159 EKPYKCPECGKSFSRRDALNVHQRTH---TGKKTS  190 (190)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHTTC---------
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHhc---CCCCCC
Confidence                    999999999999999876   566654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.88  E-value=6.1e-23  Score=190.31  Aligned_cols=141  Identities=19%  Similarity=0.464  Sum_probs=106.6

Q ss_pred             CCCceec--CCCCccccChhHHHHHHhhcCCCccccccccccccccCcccC--CCCCCCCCCCCCcccCchhhhhhhhhc
Q 011807           77 ATNRFVC--EVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVC--PEPSCVHHHPSRALGDLTGIKKHFCRK  152 (477)
Q Consensus        77 ~~k~~~C--~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C--~~C~C~~~~~~k~F~~~~~L~~H~r~H  152 (477)
                      ..++|.|  .+|++.|.....|..|+++|.              ++++|.|  ++|       ++.|.....|..|+++|
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   67 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHT--------------GEKPFPCKEEGC-------EKGFTSLHHLTRHSLTH   67 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHH--------------CCCSSCCSSTTC-------CCCCSSHHHHHHHHTTT
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcC--------------CCCCccCCCCCC-------ChhhCCHHHHHHHHHHc
Confidence            4567778  578888888888888888776              6777888  667       78888888888888888


Q ss_pred             ccccccccc--ccccccCChhHhhhhhcc-c--CCcceec--C-CCCcccChhHHHHHHH-----------H--hhhhhc
Q 011807          153 HGERKWKCE--KCSKVYAVQSDWKAHSKT-C--GTREYRC--D-CGTLFSRKDSFITHRA-----------F--CDALAE  211 (477)
Q Consensus       153 tgekpf~C~--~C~K~F~~~s~L~~H~r~-~--gekpy~C--~-Cgk~F~~~~~L~~H~~-----------~--C~k~f~  211 (477)
                      +++++|.|.  +|++.|.....|..|++. |  ++++|.|  + |++.|.+...|+.|++           +  |++.|.
T Consensus        68 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~  147 (190)
T 1tf6_A           68 TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS  147 (190)
T ss_dssp             TTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCS
T ss_pred             cCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhc
Confidence            888888887  788888888888888744 4  4677888  7 8888888888888876           2  777788


Q ss_pred             ChHHHHHHHHHhccCCCCCcccCCC---CCCCCCCC
Q 011807          212 ESARLSANQLATTINTNGHPLHIAS---QNHSSSSL  244 (477)
Q Consensus       212 ~~~~L~~H~~~h~~~~~~k~~~C~~---C~~~fss~  244 (477)
                      ....|..|+++|..      |.|..   |++.|.+.
T Consensus       148 ~~~~L~~H~~~H~~------~~C~~~~~C~~~f~~~  177 (190)
T 1tf6_A          148 LPSRLKRHEKVHAG------YPCKKDDSCSFVGKTW  177 (190)
T ss_dssp             SHHHHHHHHTSSCS------CCCCSTTTCCCCCSCH
T ss_pred             CHHHHHHHHHHhCC------CcCCCCCcCCCccccH
Confidence            88888888876532      77777   88877654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=9.4e-23  Score=189.03  Aligned_cols=153  Identities=20%  Similarity=0.318  Sum_probs=140.9

Q ss_pred             cccCC--CCCCCCCCchhhhhcCccccCCCCceec--CCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           51 AKKKR--SLPGNPDPDAEVIALSPKTLLATNRFVC--EVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        51 ~kkk~--~~~~~~~~~~~~~~~~~~~~~~~k~~~C--~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      +...+  ..++..+.....+..|.++|.++++|.|  .+|++.|.....|..|+++|.              ++++|.|.
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~   76 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT--------------GEKNFTCD   76 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT--------------TCCCEECC
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc--------------CCCceeCC
Confidence            34455  5688889999999999999999999999  889999999999999999998              88999999


Q ss_pred             --CCCCCCCCCCCcccCchhhhhhh-hhc-cccccccc--cccccccCChhHhhhhhcc-cCCcceec--C-CCCcccCh
Q 011807          127 --EPSCVHHHPSRALGDLTGIKKHF-CRK-HGERKWKC--EKCSKVYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRK  196 (477)
Q Consensus       127 --~C~C~~~~~~k~F~~~~~L~~H~-r~H-tgekpf~C--~~C~K~F~~~s~L~~H~r~-~gekpy~C--~-Cgk~F~~~  196 (477)
                        .|       ++.|.....|..|+ +.| .++++|+|  ++|++.|.....|..|+++ +++++|.|  + |++.|.+.
T Consensus        77 ~~~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~  149 (190)
T 1tf6_A           77 SDGC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP  149 (190)
T ss_dssp             SSSC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSH
T ss_pred             CCCC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCH
Confidence              77       99999999999999 677 47899999  8999999999999999999 89999999  5 99999999


Q ss_pred             hHHHHHHHH-----------hhhhhcChHHHHHHHHHhc
Q 011807          197 DSFITHRAF-----------CDALAEESARLSANQLATT  224 (477)
Q Consensus       197 ~~L~~H~~~-----------C~k~f~~~~~L~~H~~~h~  224 (477)
                      ..|++|+++           |++.|.....|..|+++|+
T Consensus       150 ~~L~~H~~~H~~~~C~~~~~C~~~f~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          150 SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH  188 (190)
T ss_dssp             HHHHHHHTSSCSCCCCSTTTCCCCCSCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCcCCCCCcCCCccccHHHHHHHHHhhc
Confidence            999999983           9999999999999998774

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=1.6e-21  Score=174.22  Aligned_cols=130  Identities=23%  Similarity=0.466  Sum_probs=110.5

Q ss_pred             CCceecCCCCccccChhHHHHHHh---hcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRR---GHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r---~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      |.+|.|.+|++.|.+...|..|++   +|.              ++++|.|++|+|.  .|++.|.....|..|+++|++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~--------------~~~~~~C~~c~C~--~c~~~f~~~~~l~~H~~~h~~   64 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHG--------------ERKEFVCHWGGCS--RELRPFKAQYMLVVHMRRHTG   64 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSS--------------CSSCCCCCBTTCT--TTTCCCSSHHHHHHHTHHHHC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCC--------------CCcceeCCCCCcc--chhhhhhhHHHHHHHHHhcCC
Confidence            357999999999999999999998   565              7899999987662  346999999999999999999


Q ss_pred             cccccccc--cccccCChhHhhhhhcc-cCCcceecC---CCCcccChhHHHHHH-HH-------------hhhhhcChH
Q 011807          155 ERKWKCEK--CSKVYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRKDSFITHR-AF-------------CDALAEESA  214 (477)
Q Consensus       155 ekpf~C~~--C~K~F~~~s~L~~H~r~-~gekpy~C~---Cgk~F~~~~~L~~H~-~~-------------C~k~f~~~~  214 (477)
                      +++|+|.+  |++.|.....|..|+++ +++++|.|+   |++.|.+...|++|+ ++             |++.|....
T Consensus        65 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~  144 (155)
T 2gli_A           65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS  144 (155)
T ss_dssp             CCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHH
T ss_pred             CCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHH
Confidence            99999985  99999999999999999 899999997   999999999999998 32             455555555


Q ss_pred             HHHHHHHHh
Q 011807          215 RLSANQLAT  223 (477)
Q Consensus       215 ~L~~H~~~h  223 (477)
                      .|..|+++|
T Consensus       145 ~L~~H~~~h  153 (155)
T 2gli_A          145 SLRKHVKTV  153 (155)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhh
Confidence            555555443

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=3.3e-22  Score=176.80  Aligned_cols=108  Identities=22%  Similarity=0.349  Sum_probs=100.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhh
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHF  149 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~  149 (477)
                      -+..++.++++|+|.+|++.|.....|..|+++|+              ++++|.|++|       ++.|.....|..|+
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~C-------~k~F~~~~~L~~H~   70 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS--------------WEKKYPCRYC-------EKVFPLAEYRTKHE   70 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHH--------------CCSCEECSSS-------SCEESSHHHHHHHH
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcC--------------CCCCeeCCcc-------Ceecccccchhhhc
Confidence            34567889999999999999999999999999998              8999999999       99999999999999


Q ss_pred             hhccccccccccccccccCChhHhhhhhcc-cCCc------ceecC-CCCcccChhH
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTR------EYRCD-CGTLFSRKDS  198 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gek------py~C~-Cgk~F~~~~~  198 (477)
                      ++|++++||.|++|++.|.....|..|+++ |+++      +|+|. |++.|.....
T Consensus        71 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           71 IHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             HHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             cccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            999999999999999999999999999999 8764      59999 9999987654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=2.9e-21  Score=165.71  Aligned_cols=109  Identities=22%  Similarity=0.526  Sum_probs=103.0

Q ss_pred             CCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhh---c
Q 011807           76 LATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCR---K  152 (477)
Q Consensus        76 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~---H  152 (477)
                      .++++|+|.+|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|..|++.   |
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~   61 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT--------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMN   61 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS--------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC--------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcC
Confidence            46789999999999999999999999998              8899999999       9999999999999995   6


Q ss_pred             cccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHH
Q 011807          153 HGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       153 tgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      .++++|.|.+|++.|.....|..|+++ +++++|.|+ |++.|.+...|++|++.
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  116 (124)
T 2dlq_A           62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK  116 (124)
T ss_dssp             SCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHH
Confidence            789999999999999999999999999 899999999 99999999999999864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=1.9e-21  Score=165.89  Aligned_cols=109  Identities=28%  Similarity=0.679  Sum_probs=103.7

Q ss_pred             CCCCceecCC--CCccccChhHHHHHHhhcCCCccccccccccccccCcccCC--CCCCCCCCCCCcccCchhhhhhhhh
Q 011807           76 LATNRFVCEV--CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP--EPSCVHHHPSRALGDLTGIKKHFCR  151 (477)
Q Consensus        76 ~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~--~C~C~~~~~~k~F~~~~~L~~H~r~  151 (477)
                      .++++|.|.+  |++.|.....|..|+++|.              ++++|.|+  .|       ++.|.....|..|+++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~   60 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT--------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRR   60 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH--------------TTCCEECCSTTC-------CCEESSHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC--------------CCCCccCCCCCC-------cCccCCHHHHHHHHHH
Confidence            4578999997  9999999999999999997              88999999  67       9999999999999999


Q ss_pred             ccccccccccccccccCChhHhhhhhcc-cCCcceec--C-CCCcccChhHHHHHHHH
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C--~-Cgk~F~~~~~L~~H~~~  205 (477)
                      |+++++|+|.+|++.|.....|..|+++ +++++|.|  + |++.|.+...|++|+++
T Consensus        61 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             cCCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            9999999999999999999999999999 89999999  8 99999999999999875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.82  E-value=2.8e-20  Score=166.57  Aligned_cols=119  Identities=20%  Similarity=0.386  Sum_probs=105.4

Q ss_pred             CCCCceecCCCCccccChhHHHHHHhh-cCCCccccccccccccccC--------cccCCCCCCCCCCCCCcccCchhhh
Q 011807           76 LATNRFVCEVCNKGFQRDQNLQLHRRG-HNLPWKLKQRSNKDIIKKK--------AYVCPEPSCVHHHPSRALGDLTGIK  146 (477)
Q Consensus        76 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~-H~~p~~c~~~~~~~~~~~k--------~~~C~~C~C~~~~~~k~F~~~~~L~  146 (477)
                      .++..|.|.+|++.|.+...|..|++. |.              +++        .|.|.+|       ++.|.....|.
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~--------------~~~~~~~~~~~~~~C~~C-------~~~f~~~~~l~   79 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHV--------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLV   79 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTS--------------CCTTCSSCCCCBTTCTTS-------SCCCSSHHHHH
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcC--------------CCcccCCccccccCCCCc-------ccccCCHHHHH
Confidence            345689999999999999999999998 54              322        3899999       99999999999


Q ss_pred             hhhhhccccccccccc--cccccCChhHhhhhhcc-cCCcceecC---CCCcccChhHHHHHHHHhhhhhcChHHHHHHH
Q 011807          147 KHFCRKHGERKWKCEK--CSKVYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRKDSFITHRAFCDALAEESARLSANQ  220 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~--C~K~F~~~s~L~~H~r~-~gekpy~C~---Cgk~F~~~~~L~~H~~~C~k~f~~~~~L~~H~  220 (477)
                      .|+++|+++++|+|.+  |++.|.....|..|+++ +++++|.|.   |++.|.+...|.+|+++               
T Consensus        80 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~---------------  144 (155)
T 2rpc_A           80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV---------------  144 (155)
T ss_dssp             HHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTT---------------
T ss_pred             HHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHH---------------
Confidence            9999999999999998  99999999999999999 899999997   99999998888776644               


Q ss_pred             HHhccCCCCCcccCC
Q 011807          221 LATTINTNGHPLHIA  235 (477)
Q Consensus       221 ~~h~~~~~~k~~~C~  235 (477)
                           |+++++|.|+
T Consensus       145 -----H~~~k~~~c~  154 (155)
T 2rpc_A          145 -----HTSDKSGPSS  154 (155)
T ss_dssp             -----TTSCCCSCSC
T ss_pred             -----hcCCCCCCCC
Confidence                 4678899885

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=6e-20  Score=163.97  Aligned_cols=131  Identities=23%  Similarity=0.394  Sum_probs=120.1

Q ss_pred             CCCCCCCCCCchhhhhcCcc---ccCCCCceecCCC-----CccccChhHHHHHHhhcCCCccccccccccccccCcccC
Q 011807           54 KRSLPGNPDPDAEVIALSPK---TLLATNRFVCEVC-----NKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVC  125 (477)
Q Consensus        54 k~~~~~~~~~~~~~~~~~~~---~~~~~k~~~C~~C-----gk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C  125 (477)
                      ++..++..+.....+..|.+   ++.++++|.|.+|     ++.|.....|..|+++|+              ++++|.|
T Consensus         5 ~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~--------------~~~~~~C   70 (155)
T 2gli_A            5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT--------------GEKPHKC   70 (155)
T ss_dssp             CBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH--------------CCCCCCC
T ss_pred             CcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC--------------CCCCccC
Confidence            45678888899999999987   7889999998753     499999999999999997              8899999


Q ss_pred             CC--CCCCCCCCCCcccCchhhhhhhhhccccccccccc--cccccCChhHhhhhh-cc-cCCcceecC---CCCcccCh
Q 011807          126 PE--PSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEK--CSKVYAVQSDWKAHS-KT-CGTREYRCD---CGTLFSRK  196 (477)
Q Consensus       126 ~~--C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~--C~K~F~~~s~L~~H~-r~-~gekpy~C~---Cgk~F~~~  196 (477)
                      .+  |       ++.|.....|..|+++|+++++|+|++  |++.|.....|..|+ ++ .++++|.|+   |++.|.+.
T Consensus        71 ~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~  143 (155)
T 2gli_A           71 TFEGC-------RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDP  143 (155)
T ss_dssp             CSTTC-------CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSH
T ss_pred             CCCCC-------CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCH
Confidence            86  7       999999999999999999999999998  999999999999999 66 789999994   99999999


Q ss_pred             hHHHHHHHH
Q 011807          197 DSFITHRAF  205 (477)
Q Consensus       197 ~~L~~H~~~  205 (477)
                      ..|++|+++
T Consensus       144 ~~L~~H~~~  152 (155)
T 2gli_A          144 SSLRKHVKT  152 (155)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999986

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.79  E-value=8e-20  Score=157.24  Aligned_cols=108  Identities=24%  Similarity=0.559  Sum_probs=99.5

Q ss_pred             CCCceecC--CCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807           77 ATNRFVCE--VCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus        77 ~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      ++++|.|.  .|++.|.+...|..|+++|               ++++|.|.+|       ++.|.....|..|++.|++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h---------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   59 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH---------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTG   59 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG---------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc---------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCC
Confidence            35789999  8999999999999999988               5689999999       9999999999999999999


Q ss_pred             cccccccc--cccccCChhHhhhhhcc-cCCcceec--C-CCCcccChhHHHHHHHHh
Q 011807          155 ERKWKCEK--CSKVYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRKDSFITHRAFC  206 (477)
Q Consensus       155 ekpf~C~~--C~K~F~~~s~L~~H~r~-~gekpy~C--~-Cgk~F~~~~~L~~H~~~C  206 (477)
                      +++|.|.+  |++.|.....|..|+++ +++++|.|  + |++.|.+...|.+|++++
T Consensus        60 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  117 (124)
T 1ubd_C           60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH  117 (124)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHH
Confidence            99999986  99999999999999999 89999999  6 999999999999988763

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.78  E-value=4e-20  Score=163.39  Aligned_cols=105  Identities=21%  Similarity=0.382  Sum_probs=91.3

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccCh
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRK  196 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  196 (477)
                      |+++|+|++|       ++.|.....|..|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.+.
T Consensus        19 Gek~y~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           19 GRVYYICIVC-------KRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             TEEEEEETTT-------CCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             CCcCeECCCC-------CCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            8999999999       99999999999999999999999999999999999999999999 899999999 99999999


Q ss_pred             hHHHHHHHHhhhhhcChHHHHHHHHHhccCCCCCcccCCCCCCCCCCC
Q 011807          197 DSFITHRAFCDALAEESARLSANQLATTINTNGHPLHIASQNHSSSSL  244 (477)
Q Consensus       197 ~~L~~H~~~C~k~f~~~~~L~~H~~~h~~~~~~k~~~C~~C~~~fss~  244 (477)
                      ..|+.|+++....              ......++|+|.+|++.|...
T Consensus        92 ~~L~~H~~~hh~~--------------~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           92 QFMSSHIKSVHSQ--------------DPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHHHTCC--------------CTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHHHHhHHhcCC--------------CCCCCCCCeecCCCCchhhhc
Confidence            9998887652110              001235679999999887543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.74  E-value=3.1e-18  Score=153.12  Aligned_cols=119  Identities=19%  Similarity=0.287  Sum_probs=109.5

Q ss_pred             cccccCCCCCCCCCCchhhhhcCccc-cCCCCc--------eecCCCCccccChhHHHHHHhhcCCCccccccccccccc
Q 011807           49 QKAKKKRSLPGNPDPDAEVIALSPKT-LLATNR--------FVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIK  119 (477)
Q Consensus        49 ~~~kkk~~~~~~~~~~~~~~~~~~~~-~~~~k~--------~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~  119 (477)
                      .....++..++..+.....+..|++. |.++.+        |.|.+|++.|.....|..|+++|+              +
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~   87 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT--------------G   87 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH--------------C
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC--------------C
Confidence            34567788899999999999999887 776654        899999999999999999999997              8


Q ss_pred             cCcccCCC--CCCCCCCCCCcccCchhhhhhhhhccccccccccc--cccccCChhHhhhhhcc-cCCcceecC
Q 011807          120 KKAYVCPE--PSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEK--CSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       120 ~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~--C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +++|.|.+  |       ++.|.....|..|+++|+++++|+|.+  |++.|.....|.+|+++ +++++|.|.
T Consensus        88 ~~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           88 EKPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CCSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            89999998  8       999999999999999999999999997  99999999999999999 899999984

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.72  E-value=1e-17  Score=140.10  Aligned_cols=91  Identities=22%  Similarity=0.512  Sum_probs=85.7

Q ss_pred             CCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807           76 LATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus        76 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      ..+++|.|.+|++.|.....|..|+++|.              ++++|.|.+|       ++.|.....|..|+++|+++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   71 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHT--------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKE   71 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHC--------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcC--------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCC
Confidence            34578999999999999999999999998              8899999999       99999999999999999999


Q ss_pred             ccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      ++|+|.+|++.|.....|..|+++ +++++|.+
T Consensus        72 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            999999999999999999999999 88998865

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.71  E-value=7.7e-18  Score=143.34  Aligned_cols=98  Identities=22%  Similarity=0.545  Sum_probs=86.3

Q ss_pred             ccCcccCCC--CCCCCCCCCCcccCchhhhhhhhhcccccccccc--ccccccCChhHhhhhhcc-cCCcceecC-CCCc
Q 011807          119 KKKAYVCPE--PSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCE--KCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTL  192 (477)
Q Consensus       119 ~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~--~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~  192 (477)
                      ++++|.|.+  |       ++.|.....|..|+++|+++++|+|.  .|++.|.....|..|+++ +++++|.|+ |++.
T Consensus         3 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            3 EKRPFMCAYPGC-------NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK   75 (119)
T ss_dssp             SSCCBCCCSTTS-------CCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCeeeeCCCCCC-------cchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCch
Confidence            788999997  7       99999999999999999999999999  799999999999999999 899999999 9999


Q ss_pred             ccChhHHHHHHHHhhhhhcChHHHHHHHHHhccCCCCCcccC--CCCCCCCCC
Q 011807          193 FSRKDSFITHRAFCDALAEESARLSANQLATTINTNGHPLHI--ASQNHSSSS  243 (477)
Q Consensus       193 F~~~~~L~~H~~~C~k~f~~~~~L~~H~~~h~~~~~~k~~~C--~~C~~~fss  243 (477)
                      |.+...|++|+++                 |   .++++|.|  ..|++.|.+
T Consensus        76 f~~~~~l~~H~~~-----------------h---~~~~~~~C~~~~C~~~f~~  108 (119)
T 2jp9_A           76 FSRSDHLKTHTRT-----------------H---TGEKPFSCRWPSCQKKFAR  108 (119)
T ss_dssp             ESCHHHHHHHHHH-----------------H---HTCCCEECCSTTCCCEESS
T ss_pred             hCCHHHHHHHHHH-----------------h---cCCCCeeCCCCCCccccCC
Confidence            9999999988764                 1   24556666  567666654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.8e-17  Score=140.66  Aligned_cols=97  Identities=20%  Similarity=0.411  Sum_probs=87.6

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc----cCCcceecC-CCCcc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT----CGTREYRCD-CGTLF  193 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~----~gekpy~C~-Cgk~F  193 (477)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|++.    .++++|.|+ |++.|
T Consensus         4 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f   76 (124)
T 2dlq_A            4 GSSGVECPTC-------HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF   76 (124)
T ss_dssp             CCSSCCCTTT-------CCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEE
T ss_pred             CCCCCCCCCC-------CCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCcc
Confidence            7889999999       99999999999999999999999999999999999999999984    578999999 99999


Q ss_pred             cChhHHHHHHHH-----------hhhhhcChHHHHHHHHH
Q 011807          194 SRKDSFITHRAF-----------CDALAEESARLSANQLA  222 (477)
Q Consensus       194 ~~~~~L~~H~~~-----------C~k~f~~~~~L~~H~~~  222 (477)
                      .+...|+.|+++           |++.|.....|..|++.
T Consensus        77 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  116 (124)
T 2dlq_A           77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK  116 (124)
T ss_dssp             SSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHH
Confidence            999999999875           67777777777777653

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=2.1e-17  Score=140.37  Aligned_cols=102  Identities=12%  Similarity=0.208  Sum_probs=88.6

Q ss_pred             hhhhcCccccCCCCceecCCCCccccChhHHHHHHhh--cCCCccccccccccccccCcc-cCCCCCCCCCCCCCcc--c
Q 011807           66 EVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRG--HNLPWKLKQRSNKDIIKKKAY-VCPEPSCVHHHPSRAL--G  140 (477)
Q Consensus        66 ~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~--H~~p~~c~~~~~~~~~~~k~~-~C~~C~C~~~~~~k~F--~  140 (477)
                      ..+..|+++|.++++|.|.+|++.|.....|..|+++  |.              .++++ .|.+|       ++.|  .
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~--------------~~~~~~~C~~C-------~~~f~f~   63 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY--------------RDDNHETDNNN-------PKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC--------------BCSCCCCCCCC-------CSCCSSC
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc--------------ccCCCccCCCC-------Ccccccc
Confidence            3466788999999999999999999999999999998  65              55554 59999       7777  8


Q ss_pred             CchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          141 DLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       141 ~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      ....|..|+++|+++++|+|++|++.|.....|.+|+++ +......+.
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence            999999999999999999999999999999999999999 665555443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.4e-17  Score=135.24  Aligned_cols=90  Identities=29%  Similarity=0.486  Sum_probs=81.6

Q ss_pred             cCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      ..++++|.|.+|++.|.....|..|++.|.              ++++|.|.+|       ++.|.....|..|+++|++
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   61 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHT--------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSD   61 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCC--------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcC--------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCC
Confidence            356788999999999999999999999997              7889999999       9999999999999999999


Q ss_pred             cccccccccccccCChhHhhhhhcc-cCCcce
Q 011807          155 ERKWKCEKCSKVYAVQSDWKAHSKT-CGTREY  185 (477)
Q Consensus       155 ekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy  185 (477)
                      +++|+|.+|++.|.....|..|+++ +++++.
T Consensus        62 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSCCCC
T ss_pred             CCCccCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999 777643

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.9e-17  Score=139.21  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=87.5

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhh
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHF  149 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~  149 (477)
                      .+.++|.++++|.|.+|++.|.....|..|+++|.                ++|.|.+|       ++.|.....|..|+
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~----------------~~~~C~~C-------~~~f~~~~~l~~H~   62 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR----------------NAAVCPYC-------SLRFFSPELKQEHE   62 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH----------------HSBCCTTT-------CCCBSSHHHHHHHH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC----------------CCccCCCC-------CCccCCHHHHHHHH
Confidence            34567888999999999999999999999999984                58999999       99999999999999


Q ss_pred             hhccccccccccccccccCChhHhhhhhc-c-cCCcceecC
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSK-T-CGTREYRCD  188 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r-~-~gekpy~C~  188 (477)
                      + |+++++|+|.+|++.|.....|+.|++ + .++++|.|.
T Consensus        63 ~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           63 S-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             H-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             H-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            6 999999999999999999999999998 6 788999884

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.68  E-value=2.4e-17  Score=141.62  Aligned_cols=110  Identities=20%  Similarity=0.323  Sum_probs=97.7

Q ss_pred             CCC--CCCCCCCchhhhhcCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC--CC
Q 011807           54 KRS--LPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE--PS  129 (477)
Q Consensus        54 k~~--~~~~~~~~~~~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~--C~  129 (477)
                      ++.  .++..+.....+..|.++| ++++|.|.+|++.|.....|..|+++|.              ++++|.|.+  | 
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-   70 (124)
T 1ubd_C            7 ACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT--------------GEKPFQCTFEGC-   70 (124)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTS--------------CCCCEECCSTTC-
T ss_pred             cCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcC--------------CCCCeeCCCCCC-
Confidence            455  6788888888999999999 8899999999999999999999999998              889999986  7 


Q ss_pred             CCCCCCCCcccCchhhhhhhhhcccccccccc--ccccccCChhHhhhhhcc-cCCcce
Q 011807          130 CVHHHPSRALGDLTGIKKHFCRKHGERKWKCE--KCSKVYAVQSDWKAHSKT-CGTREY  185 (477)
Q Consensus       130 C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~--~C~K~F~~~s~L~~H~r~-~gekpy  185 (477)
                            ++.|.....|..|+++|+++++|+|.  .|++.|.....|..|+++ ++++++
T Consensus        71 ------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           71 ------GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             ------CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             ------cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence                  99999999999999999999999996  599999999999999999 888876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=6.7e-17  Score=130.75  Aligned_cols=85  Identities=22%  Similarity=0.525  Sum_probs=69.9

Q ss_pred             CCceecC--CCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807           78 TNRFVCE--VCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus        78 ~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      +++|.|.  .|++.|.....|..|+++|.              ++++|.|.+|       ++.|.....|..|+++|+++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHT--------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHH--------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhC--------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCC
Confidence            5678887  58888888888888888886              7788888888       88888888888888888888


Q ss_pred             ccccccccccccCChhHhhhhhcc-cCCc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      ++|+|.+|++.|.....|..|+++ ++++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            888888888888888888888888 6665

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1e-16  Score=135.04  Aligned_cols=86  Identities=26%  Similarity=0.550  Sum_probs=81.8

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccC
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  195 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~  195 (477)
                      .++++|.| +|       ++.|.....|..|++.|+++++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|.+
T Consensus         6 ~~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (110)
T 2csh_A            6 SGDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW   77 (110)
T ss_dssp             CCCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred             CCCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence            48899999 88       99999999999999999999999999999999999999999999 899999999 9999999


Q ss_pred             hhHHHHHHHHhhhhhc
Q 011807          196 KDSFITHRAFCDALAE  211 (477)
Q Consensus       196 ~~~L~~H~~~C~k~f~  211 (477)
                      ...|++|++.|.+.+.
T Consensus        78 ~~~l~~H~~~~~~~~~   93 (110)
T 2csh_A           78 RDSFHRHVTSCTKSYE   93 (110)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccccc
Confidence            9999999999877654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.65  E-value=2.2e-16  Score=131.96  Aligned_cols=81  Identities=21%  Similarity=0.512  Sum_probs=76.7

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccC
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  195 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~  195 (477)
                      ..+++|.|.+|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|. |++.|.+
T Consensus        13 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   85 (106)
T 2ee8_A           13 KTKKEFICKFC-------GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ   85 (106)
T ss_dssp             CCCCCCBCSSS-------CCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred             CCCcCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence            36789999999       99999999999999999999999999999999999999999999 899999999 9999999


Q ss_pred             hhHHHHHHHH
Q 011807          196 KDSFITHRAF  205 (477)
Q Consensus       196 ~~~L~~H~~~  205 (477)
                      ...|.+|+++
T Consensus        86 ~~~L~~H~~~   95 (106)
T 2ee8_A           86 SRTLAVHKTL   95 (106)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888766

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.1e-16  Score=129.31  Aligned_cols=85  Identities=22%  Similarity=0.482  Sum_probs=70.4

Q ss_pred             CCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807           76 LATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus        76 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      .++++|.|.+|++.|.....|..|+++|.              ++++|.|.+|       ++.|.....|..|++.|+++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHS--------------GEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSC--------------SSCSEECSSS-------CCEESCHHHHHHHHHHHCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcC--------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCC
Confidence            45678888888888888888888888887              7788888888       88888888888888888886


Q ss_pred             --ccccccccccccCChhHhhhhhcc-cC
Q 011807          156 --RKWKCEKCSKVYAVQSDWKAHSKT-CG  181 (477)
Q Consensus       156 --kpf~C~~C~K~F~~~s~L~~H~r~-~g  181 (477)
                        ++|+|.+|++.|.....|..|++. |.
T Consensus        62 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             CCSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             CCCceECCCccchhCCHHHHHHHHHHhcC
Confidence              888888888888888888888864 53

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=3.3e-17  Score=139.23  Aligned_cols=92  Identities=13%  Similarity=0.189  Sum_probs=84.3

Q ss_pred             hhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhh--cccccccc-cccccccc--
Q 011807           93 DQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCR--KHGERKWK-CEKCSKVY--  167 (477)
Q Consensus        93 ~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~--Htgekpf~-C~~C~K~F--  167 (477)
                      ...|..|+++|+              ++++|.|++|       ++.|.....|..|+++  |.+++++. |.+|++.|  
T Consensus         4 ~~~l~~H~~~H~--------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f   62 (115)
T 2dmi_A            4 GSSGKLYGSIFT--------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK   62 (115)
T ss_dssp             CCCCCCCCCCCC--------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSS
T ss_pred             chhhhhheeeeC--------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCccccc
Confidence            456788999997              8999999999       9999999999999999  88888765 99999999  


Q ss_pred             CChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHH
Q 011807          168 AVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       168 ~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      .....|..|+++ +++++|.|+ |++.|.+...|++|+++
T Consensus        63 ~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~  102 (115)
T 2dmi_A           63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK  102 (115)
T ss_dssp             CCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             ccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHH
Confidence            899999999999 899999999 99999999999988876

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.63  E-value=1.1e-16  Score=127.07  Aligned_cols=79  Identities=29%  Similarity=0.610  Sum_probs=56.8

Q ss_pred             ceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWK  159 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~  159 (477)
                      +|.|.+|++.|.....|..|+++|.              ++++|.|.+|       ++.|.....|..|++.|+++++|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~   59 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS--------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHK   59 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH--------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEE
T ss_pred             CccCCCCcccccCchhHHHHHHHcC--------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCc
Confidence            4677777777777777777777765              6667777776       777777777777777777777777


Q ss_pred             ccccccccCChhHhhhhhcc
Q 011807          160 CEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       160 C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |.+|++.|.....|..|+++
T Consensus        60 C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           60 CQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CTTTSCEESSHHHHHHHHHH
T ss_pred             CCCcchhhCChHHHHHHHHh
Confidence            77777777777777777666

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.1e-16  Score=133.17  Aligned_cols=85  Identities=16%  Similarity=0.356  Sum_probs=81.6

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhc
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRK  152 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~H  152 (477)
                      ..|+++++|.| +|++.|.....|..|++.|.              ++++|.|.+|       ++.|.....|..|+++|
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h   60 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL--------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIH   60 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHS--------------CCCSEECTTT-------SCEESSSHHHHHHHTTT
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcC--------------CCcCccCCCC-------CcccCCHHHHHHHHHHc
Confidence            35788999999 99999999999999999998              8899999999       99999999999999999


Q ss_pred             cccccccccccccccCChhHhhhhhcc
Q 011807          153 HGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       153 tgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +++++|+|.+|++.|.....|.+|+++
T Consensus        61 ~~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           61 TGIKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCCeeCCCCcchhcCHHHHHHHHHH
Confidence            999999999999999999999999998

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.8e-16  Score=127.96  Aligned_cols=80  Identities=18%  Similarity=0.366  Sum_probs=76.7

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccCh
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRK  196 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~  196 (477)
                      ++++|.|.+|       ++.|.....|..|++.|+++++|+|.+|++.|.....|..|+++ +++++|.|. |++.|.+.
T Consensus         5 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   77 (96)
T 2dmd_A            5 SSGPHKCEVC-------GKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS   77 (96)
T ss_dssp             CCCCCCBTTT-------TBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSH
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCH
Confidence            7889999999       99999999999999999999999999999999999999999999 899999999 99999999


Q ss_pred             hHHHHHHHH
Q 011807          197 DSFITHRAF  205 (477)
Q Consensus       197 ~~L~~H~~~  205 (477)
                      ..|.+|+++
T Consensus        78 ~~l~~H~~~   86 (96)
T 2dmd_A           78 SQLTVHLRS   86 (96)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            999988765

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=5.4e-16  Score=126.79  Aligned_cols=79  Identities=23%  Similarity=0.507  Sum_probs=75.8

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCC--cceecC-CCCccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT--REYRCD-CGTLFS  194 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge--kpy~C~-Cgk~F~  194 (477)
                      ++++|.|.+|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ +++  ++|.|. |++.|.
T Consensus         4 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            4 GSSGVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCSCEECSSS-------CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCeECCCC-------CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence            7899999999       99999999999999999999999999999999999999999999 776  999999 999999


Q ss_pred             ChhHHHHHHH
Q 011807          195 RKDSFITHRA  204 (477)
Q Consensus       195 ~~~~L~~H~~  204 (477)
                      +...|+.|++
T Consensus        77 ~~~~L~~H~~   86 (95)
T 2yt9_A           77 RPDHLNGHIK   86 (95)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999999986

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.60  E-value=4.2e-16  Score=123.60  Aligned_cols=77  Identities=25%  Similarity=0.555  Sum_probs=74.2

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHH
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSF  199 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L  199 (477)
                      +|.|.+|       ++.|.....|..|++.|.++++|+|.+|++.|.....|..|+++ +++++|.|. |++.|.+...|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5889999       99999999999999999999999999999999999999999999 899999999 99999999999


Q ss_pred             HHHHHH
Q 011807          200 ITHRAF  205 (477)
Q Consensus       200 ~~H~~~  205 (477)
                      ++|+++
T Consensus        74 ~~H~~~   79 (82)
T 2kmk_A           74 ITHSRK   79 (82)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.60  E-value=4.7e-16  Score=125.70  Aligned_cols=81  Identities=23%  Similarity=0.630  Sum_probs=75.2

Q ss_pred             ccCcccCC--CCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCccc
Q 011807          119 KKKAYVCP--EPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFS  194 (477)
Q Consensus       119 ~~k~~~C~--~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~  194 (477)
                      ++++|.|.  .|       ++.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.
T Consensus         1 ~~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            36899998  47       99999999999999999999999999999999999999999999 899999999 999999


Q ss_pred             ChhHHHHHHHHh
Q 011807          195 RKDSFITHRAFC  206 (477)
Q Consensus       195 ~~~~L~~H~~~C  206 (477)
                      +...|++|++++
T Consensus        74 ~~~~l~~H~~~H   85 (90)
T 1a1h_A           74 RSDERKRHTKIH   85 (90)
T ss_dssp             SHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHh
Confidence            999999998763

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=4.9e-16  Score=130.49  Aligned_cols=77  Identities=21%  Similarity=0.298  Sum_probs=71.6

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcccCCcceecC-CCCcccChh
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD-CGTLFSRKD  197 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~  197 (477)
                      ++++|.|.+|       ++.|.....|..|+++|  +++|+|.+|++.|.....|..|++-+++++|.|+ |++.|.+..
T Consensus        13 ~~~~~~C~~C-------~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A           13 NKEVYQCRLC-------NAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSF   83 (107)
T ss_dssp             CCCCCBCTTT-------CCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHH
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCHH
Confidence            8899999999       99999999999999999  5799999999999999999999943789999999 999999999


Q ss_pred             HHHHHHH
Q 011807          198 SFITHRA  204 (477)
Q Consensus       198 ~L~~H~~  204 (477)
                      .|++|++
T Consensus        84 ~L~~H~~   90 (107)
T 1wjp_A           84 SIWRHQV   90 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888775

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.56  E-value=3.5e-15  Score=120.31  Aligned_cols=81  Identities=23%  Similarity=0.603  Sum_probs=62.6

Q ss_pred             CCceecCC--CCccccChhHHHHHHhhcCCCccccccccccccccCcccCC--CCCCCCCCCCCcccCchhhhhhhhhcc
Q 011807           78 TNRFVCEV--CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP--EPSCVHHHPSRALGDLTGIKKHFCRKH  153 (477)
Q Consensus        78 ~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~--~C~C~~~~~~k~F~~~~~L~~H~r~Ht  153 (477)
                      .++|.|.+  |++.|.....|..|++.|.              ++++|.|+  .|       ++.|.....|..|++.|+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~   61 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT--------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHT   61 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC--------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC--------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcC
Confidence            35677877  8888888888888887776              67778886  36       778888888888888888


Q ss_pred             ccccccccccccccCChhHhhhhhcc
Q 011807          154 GERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       154 gekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++++|+|.+|++.|.....|..|+++
T Consensus        62 ~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           62 GHRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHHh
Confidence            88888888888888888888877765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.55  E-value=5.1e-15  Score=121.97  Aligned_cols=81  Identities=20%  Similarity=0.533  Sum_probs=68.2

Q ss_pred             CCceecCC--CCccccChhHHHHHHhhcCCCccccccccccccccCcccCC--CCCCCCCCCCCcccCchhhhhhhhhcc
Q 011807           78 TNRFVCEV--CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP--EPSCVHHHPSRALGDLTGIKKHFCRKH  153 (477)
Q Consensus        78 ~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~--~C~C~~~~~~k~F~~~~~L~~H~r~Ht  153 (477)
                      ++.|.|.+  |++.|.....|..|++.|.              ++++|.|.  .|       ++.|.....|..|+++|+
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~   71 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHT--------------GEKPYKCTWEGC-------DWRFARSDELTRHYRKHT   71 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHS--------------CCCCEECCSSSC-------CCEESSHHHHHHHHHHHT
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhC--------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHhC
Confidence            45788886  8888888888888888887              77888886  46       888888888888888888


Q ss_pred             ccccccccccccccCChhHhhhhhcc
Q 011807          154 GERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       154 gekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++++|+|.+|++.|.....|..|+++
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHH
Confidence            88888888888888888888888877

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.53  E-value=6.7e-16  Score=125.15  Aligned_cols=82  Identities=18%  Similarity=0.293  Sum_probs=75.6

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcccCCcceecC-CCCcccChhH
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD-CGTLFSRKDS  198 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~  198 (477)
                      +++|.|.+|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|++++.+++|.|+ |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            478999999       99999999999999999999999999999999999999999999446899999 9999999999


Q ss_pred             HHHHHHHhhh
Q 011807          199 FITHRAFCDA  208 (477)
Q Consensus       199 L~~H~~~C~k  208 (477)
                      |..|++...+
T Consensus        74 L~~H~~~~h~   83 (88)
T 1llm_C           74 LENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999986443

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=119.84  Aligned_cols=80  Identities=24%  Similarity=0.540  Sum_probs=75.8

Q ss_pred             ccCcccCCC--CCCCCCCCCCcccCchhhhhhhhhcccccccccc--ccccccCChhHhhhhhcc-cCCcceecC-CCCc
Q 011807          119 KKKAYVCPE--PSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCE--KCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTL  192 (477)
Q Consensus       119 ~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~--~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~  192 (477)
                      .++.|.|.+  |       ++.|.....|..|++.|+++++|+|.  .|++.|.....|..|+++ +++++|.|+ |++.
T Consensus        12 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   84 (100)
T 2ebt_A           12 KRRIHYCDYPGC-------TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS   84 (100)
T ss_dssp             SCCCEECCSSSC-------CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCB
T ss_pred             cCcceEcCCCCC-------CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCc
Confidence            668899997  7       99999999999999999999999996  699999999999999999 899999999 9999


Q ss_pred             ccChhHHHHHHHH
Q 011807          193 FSRKDSFITHRAF  205 (477)
Q Consensus       193 F~~~~~L~~H~~~  205 (477)
                      |.+...|++|+++
T Consensus        85 f~~~~~l~~H~~~   97 (100)
T 2ebt_A           85 FSRSDHLALHMKR   97 (100)
T ss_dssp             CSSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH
Confidence            9999999999876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.51  E-value=8.7e-15  Score=117.92  Aligned_cols=80  Identities=23%  Similarity=0.534  Sum_probs=75.0

Q ss_pred             ccCcccCCC--CCCCCCCCCCcccCchhhhhhhhhcccccccccc--ccccccCChhHhhhhhcc-cCCcceecC-CCCc
Q 011807          119 KKKAYVCPE--PSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCE--KCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTL  192 (477)
Q Consensus       119 ~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~--~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~  192 (477)
                      ..+.|.|++  |       ++.|.....|..|++.|+++++|+|.  +|++.|.....|..|+++ +++++|.|+ |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            357899999  7       99999999999999999999999997  699999999999999999 899999999 9999


Q ss_pred             ccChhHHHHHHHH
Q 011807          193 FSRKDSFITHRAF  205 (477)
Q Consensus       193 F~~~~~L~~H~~~  205 (477)
                      |.....|..|+++
T Consensus        75 f~~~~~l~~H~~~   87 (89)
T 2wbs_A           75 FSRSDHLALHMKR   87 (89)
T ss_dssp             ESSHHHHHHHGGG
T ss_pred             cCCHHHHHHHHHh
Confidence            9999999999875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.50  E-value=7.5e-15  Score=111.59  Aligned_cols=57  Identities=23%  Similarity=0.448  Sum_probs=51.7

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCc
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      ||||+|.+|       ++.|.....|..|+++|+++|||+|.+|+|.|...++|++|+++ +||+
T Consensus         2 EKpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFC-------GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTT-------CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCC-------CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            689999999       99999999999999999999999999999999999999999999 5553

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.49  E-value=2.7e-15  Score=121.49  Aligned_cols=80  Identities=20%  Similarity=0.341  Sum_probs=76.5

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccc
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERK  157 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekp  157 (477)
                      +++|.|.+|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|..|+++|++ ++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~   58 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT--------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LP   58 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH--------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC--------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Cc
Confidence            478999999999999999999999997              8899999999       9999999999999999995 89


Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |.|..|++.|.....|..|++.
T Consensus        59 ~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           59 ILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=2.8e-14  Score=112.60  Aligned_cols=71  Identities=23%  Similarity=0.489  Sum_probs=51.0

Q ss_pred             CCCCceecCC--CCccccChhHHHHHHh-hcCCCccccccccccccccCcccCCC--CCCCCCCCCCcccCchhhhhhhh
Q 011807           76 LATNRFVCEV--CNKGFQRDQNLQLHRR-GHNLPWKLKQRSNKDIIKKKAYVCPE--PSCVHHHPSRALGDLTGIKKHFC  150 (477)
Q Consensus        76 ~~~k~~~C~~--Cgk~F~~~~~L~~H~r-~H~~p~~c~~~~~~~~~~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r  150 (477)
                      +++++|.|..  |++.|.....|..|++ .|.              ++++|.|++  |       ++.|.....|..|++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~--------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~   61 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI--------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMK   61 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG--------------SCCCEECSCTTT-------CCEESSHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC--------------CCCCeECCCCCC-------cCccCCHHHHHHHHH
Confidence            3456677765  7777777777777777 565              667777776  6       777777777777777


Q ss_pred             hcccccccccccccccc
Q 011807          151 RKHGERKWKCEKCSKVY  167 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F  167 (477)
                      +|+++++|+|.+|++.|
T Consensus        62 ~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A           62 LHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             HHHTSCCCSCCSSSCCC
T ss_pred             HhCCCCCeeCCCCCCCC
Confidence            77777777777777776

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.48  E-value=1.8e-14  Score=109.44  Aligned_cols=58  Identities=24%  Similarity=0.562  Sum_probs=55.6

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      ||||+|.+|++.|.....|..|+++|+              ++++|.|.+|       ++.|.....|..|+++|+||+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht--------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL--------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH--------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC--------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCCC
Confidence            689999999999999999999999998              9999999999       999999999999999999985

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.7e-14  Score=115.52  Aligned_cols=78  Identities=21%  Similarity=0.411  Sum_probs=71.2

Q ss_pred             HHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc----ccccccccccccCCh
Q 011807           95 NLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE----RKWKCEKCSKVYAVQ  170 (477)
Q Consensus        95 ~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge----kpf~C~~C~K~F~~~  170 (477)
                      .|..|+++|+              ++++|.|.+|       ++.|.....|..|++.|+.+    ++|+|.+|++.|...
T Consensus         2 s~~~H~~~H~--------------~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~   60 (86)
T 1x6h_A            2 SSGSSGRTHT--------------GEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR   60 (86)
T ss_dssp             TTTCCSTTCC--------------CCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCH
T ss_pred             Ccccccceec--------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCH
Confidence            3567888887              8999999999       99999999999999987765    789999999999999


Q ss_pred             hHhhhhhcc-cCCcceecC-CCCcc
Q 011807          171 SDWKAHSKT-CGTREYRCD-CGTLF  193 (477)
Q Consensus       171 s~L~~H~r~-~gekpy~C~-Cgk~F  193 (477)
                      ..|..|+++ ++++++.|. |+..|
T Consensus        61 ~~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           61 NTMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHHHHHHccCCCCcccCCCCCCC
Confidence            999999999 899999999 99876

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=3.6e-14  Score=111.97  Aligned_cols=69  Identities=20%  Similarity=0.432  Sum_probs=65.6

Q ss_pred             ccCcccCCC--CCCCCCCCCCcccCchhhhhhhh-hccccccccccc--cccccCChhHhhhhhcc-cCCcceecC-CCC
Q 011807          119 KKKAYVCPE--PSCVHHHPSRALGDLTGIKKHFC-RKHGERKWKCEK--CSKVYAVQSDWKAHSKT-CGTREYRCD-CGT  191 (477)
Q Consensus       119 ~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r-~Htgekpf~C~~--C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk  191 (477)
                      ++++|.|..  |       ++.|.....|..|++ .|.++++|+|.+  |++.|.....|+.|+++ +++++|.|+ |++
T Consensus         4 ~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            4 GSSGMPCDFPGC-------GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             CCSSEECSSTTT-------CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCccCCCCCC-------cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            678999987  7       999999999999999 799999999999  99999999999999999 899999999 999


Q ss_pred             ccc
Q 011807          192 LFS  194 (477)
Q Consensus       192 ~F~  194 (477)
                      .|.
T Consensus        77 ~F~   79 (79)
T 2dlk_A           77 SSG   79 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            994

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=9.1e-14  Score=111.14  Aligned_cols=83  Identities=19%  Similarity=0.314  Sum_probs=73.3

Q ss_pred             hhcCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhh
Q 011807           68 IALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKK  147 (477)
Q Consensus        68 ~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~  147 (477)
                      +..|+++|.++++|.|.+|++.|.....|..|++.|+..          ...+++|.|.+|       ++.|.....|..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~----------~~~~~~~~C~~C-------~~~f~~~~~L~~   65 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP----------NFVPAAFVCSKC-------GKTFTRRNTMAR   65 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS----------SCCCCCEECSSS-------CCEESCHHHHHH
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCC----------cCCCcceECCCC-------CChhCCHHHHHH
Confidence            456889999999999999999999999999999987610          001379999999       999999999999


Q ss_pred             hhhhcccccccccccccccc
Q 011807          148 HFCRKHGERKWKCEKCSKVY  167 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F  167 (477)
                      |+++|++++++.|..|+..|
T Consensus        66 H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           66 HADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHccCCCCcccCCCCCCC
Confidence            99999999999999999876

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.42  E-value=7e-14  Score=111.24  Aligned_cols=76  Identities=28%  Similarity=0.578  Sum_probs=65.4

Q ss_pred             ceec--CCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC--CCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807           80 RFVC--EVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE--PSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus        80 ~~~C--~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      +|+|  .+|++.|.....|..|+++|.              ++++|.|++  |       ++.|.....|..|+++|++ 
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~-   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT--------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG-   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH--------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS-
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC--------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC-
Confidence            5788  888888888888888888887              788888887  7       8888888888888888887 


Q ss_pred             ccccccc---cccccCChhHhhhhhcc
Q 011807          156 RKWKCEK---CSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       156 kpf~C~~---C~K~F~~~s~L~~H~r~  179 (477)
                        |.|.+   |++.|.....|..|+++
T Consensus        59 --~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 --YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             --EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             --CCCCCCCCCCCccCCHHHHHHHHHh
Confidence              88888   88888888888888876

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.9e-13  Score=107.70  Aligned_cols=65  Identities=26%  Similarity=0.463  Sum_probs=48.0

Q ss_pred             cCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      +.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|       ++.|.....|..|+++|++
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHT--------------GEKPYKCDEC-------GKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTC--------------CSCSEECSSS-------CCEESSHHHHHHHGGGSCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcC--------------CCcCeeCCCC-------CCccCCHHHHHHHHHHhCC
Confidence            344567777777777777777777777776              6677777777       7777777777777777777


Q ss_pred             cccccc
Q 011807          155 ERKWKC  160 (477)
Q Consensus       155 ekpf~C  160 (477)
                      ++||+|
T Consensus        72 ~~p~~C   77 (77)
T 2cot_A           72 SGPSSG   77 (77)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            777776

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.41  E-value=1.2e-14  Score=126.00  Aligned_cols=116  Identities=15%  Similarity=0.232  Sum_probs=84.4

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcc
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH  153 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Ht  153 (477)
                      .+.+.++|.|..++...  ...+..|.+.+..           ...++.+.|++|.-. ..+.+.|.....|..|+ .|+
T Consensus         6 ~~~~~k~~~~~~k~~~~--~~s~ee~~~~~~l-----------~~~~~~~~c~~~~~~-~~~~~~~~~~~~l~~h~-~h~   70 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFI--HVTLEELKRYHQL-----------TPEQKRLIRAIVKTL-IHNPQLLDESSYLYRLL-ASK   70 (129)
T ss_dssp             CCTTCCGGGGCSSCEEE--ECCHHHHHHHTTS-----------CHHHHHHHHHHHHHH-HHCGGGTTTHHHHHHHH-HHH
T ss_pred             hcccccccccccCCeee--eecHHhhhccccC-----------ChhhCcccchhhhcc-cCCCcccCCHHHHHHHH-HhC
Confidence            45677889887655332  2344555444431           014567788877100 00023344666777777 699


Q ss_pred             ccccccccccccccCChhHhhhhhcccCCcceecC-CCCcccChhHHHHHHHH
Q 011807          154 GERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       154 gekpf~C~~C~K~F~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      +++||+|.+|++.|.....|+.|+++| +++|.|+ |++.|.+...|++|+++
T Consensus        71 ~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~  122 (129)
T 2wbt_A           71 AISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCK  122 (129)
T ss_dssp             HHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHH
Confidence            999999999999999999999999999 9999999 99999999999999876

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=9.1e-14  Score=115.27  Aligned_cols=79  Identities=18%  Similarity=0.325  Sum_probs=67.0

Q ss_pred             cccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCccc-Cchhhhhhhhhccc-cccccccccccc
Q 011807           89 GFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALG-DLTGIKKHFCRKHG-ERKWKCEKCSKV  166 (477)
Q Consensus        89 ~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~-~~~~L~~H~r~Htg-ekpf~C~~C~K~  166 (477)
                      .+.....+..|+++|.              ++++|.|.+|       ++.|. ....|..|+++|++ +++|+|.+|+|.
T Consensus         5 s~~~~~~~~~h~~~h~--------------~~~~~~C~~C-------~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~   63 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIH--------------ERGEAVCPTC-------NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQ   63 (98)
T ss_dssp             CCCCCCSCSHHHHTTT--------------TTSCCCCTTT-------CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CCCCCCcHHHHHHHhc--------------cCCCcCCCCC-------CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCc
Confidence            3445556778888887              8889999998       89999 89999999999998 899999999999


Q ss_pred             cCChhHhhhhhcc-cCCcceecC
Q 011807          167 YAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       167 F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      |.....|++|+++ ++++++...
T Consensus        64 F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           64 FKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             CSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             cCCHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999988 888886654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.9e-13  Score=107.70  Aligned_cols=63  Identities=22%  Similarity=0.528  Sum_probs=60.6

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|.+|+++ ++++||+|
T Consensus        14 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCC-------CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            47899999999       99999999999999999999999999999999999999999999 89999998

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=4.4e-13  Score=112.78  Aligned_cols=72  Identities=17%  Similarity=0.269  Sum_probs=52.1

Q ss_pred             cCCCCceecCCCCccccChhHHHHHHh-hcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhh-hhhc
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHRR-GHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKH-FCRK  152 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H-~r~H  152 (477)
                      ..++++|.|.+|++.|.....|..|++ +|...           .++++|.|.+|       ++.|.....|..| +++|
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~-----------~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~H   74 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV-----------VLNSSYVCVEC-------NFLTKRYDALSEHNLKYH   74 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC-----------CCSCCEEETTT-------TEEESSTHHHHTHHHHTS
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC-----------CCCCCcCCCCC-------CcccCCHHHHHHHHHHhc
Confidence            456677888888888888888888876 47300           05677888877       7788888888888 6778


Q ss_pred             cccccccccccc
Q 011807          153 HGERKWKCEKCS  164 (477)
Q Consensus       153 tgekpf~C~~C~  164 (477)
                      +++|||+|.++.
T Consensus        75 tgekpy~C~~~~   86 (102)
T 2ghf_A           75 PGEENFKLTMVK   86 (102)
T ss_dssp             TTCCCEEEEECC
T ss_pred             CCCCCeeCCccc
Confidence            888888877654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=3.8e-13  Score=111.63  Aligned_cols=76  Identities=16%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             ccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcc-cCchhhhhhhhhccccccccccccccc
Q 011807           88 KGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRAL-GDLTGIKKHFCRKHGERKWKCEKCSKV  166 (477)
Q Consensus        88 k~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F-~~~~~L~~H~r~Htgekpf~C~~C~K~  166 (477)
                      ..|.....|..|++.|.              ++++|.|++|       ++.| .....|+.|+++| ++++|+|.+|+|.
T Consensus        14 ~~~~~~~~~~~~~~~~~--------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~   71 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV--------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQ   71 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH--------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCC
T ss_pred             CCCCCchHHHHHHHHhc--------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCe
Confidence            35566778888988887              8889999998       9999 8999999999999 9999999999999


Q ss_pred             cCChhHhhhh-hcccCCcce
Q 011807          167 YAVQSDWKAH-SKTCGTREY  185 (477)
Q Consensus       167 F~~~s~L~~H-~r~~gekpy  185 (477)
                      |.....|+.| +++|.++||
T Consensus        72 F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           72 LRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSHHHHHHHHHHHTCCCSS
T ss_pred             eCCHHHHHHHhHHhcCCCCC
Confidence            9999999999 767666665

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.1e-13  Score=113.01  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=63.7

Q ss_pred             CCcccCchhhhhhhhhccccccccccccccccC-ChhHhhhhhcc-cC-CcceecC-CCCcccChhHHHHHHHH
Q 011807          136 SRALGDLTGIKKHFCRKHGERKWKCEKCSKVYA-VQSDWKAHSKT-CG-TREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~-~~s~L~~H~r~-~g-ekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      ...+.....+..|+++|+++++|+|.+|++.|. ....|+.|+++ ++ +++|.|+ |++.|.++..|++|+++
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~   76 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA   76 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHH
Confidence            456777788999999999999999999999999 99999999999 77 8999999 99999999998877754

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=4.7e-13  Score=105.43  Aligned_cols=62  Identities=19%  Similarity=0.382  Sum_probs=55.8

Q ss_pred             hhhhhhhhccccccccccccccccCChhHhhhhhcc-cC--CcceecC-CCCcccChhHHHHHHHH
Q 011807          144 GIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CG--TREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       144 ~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~g--ekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      .|.+|+++|+++++|+|.+|++.|.....|+.|++. |.  +++|.|+ |++.|.+...|++|+++
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHH
Confidence            467899999999999999999999999999999985 54  3899999 99999999999988875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.33  E-value=9.7e-13  Score=102.76  Aligned_cols=63  Identities=22%  Similarity=0.454  Sum_probs=41.9

Q ss_pred             cCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      +.++++|+|.+|++.|.....|..|+++|+              ++++|.|.+|       ++.|.....|..|+++|++
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~--------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHT--------------GEKPYRCNIC-------GAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHC--------------CCCSEECTTT-------CCEESCHHHHHHHHHHHCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcC--------------CCCCEECCCC-------CchhCCHHHHHHHHHhcCC
Confidence            345566666666666666666666666665              5666666666       6666666666666666666


Q ss_pred             cccc
Q 011807          155 ERKW  158 (477)
Q Consensus       155 ekpf  158 (477)
                      ++||
T Consensus        71 ~kp~   74 (74)
T 2lce_A           71 EKPY   74 (74)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            6664

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.33  E-value=8.4e-13  Score=104.91  Aligned_cols=74  Identities=26%  Similarity=0.527  Sum_probs=68.6

Q ss_pred             cccC--CCCCCCCCCCCCcccCchhhhhhhhhccccccccccc--cccccCChhHhhhhhcc-cCCcceecC----CCCc
Q 011807          122 AYVC--PEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEK--CSKVYAVQSDWKAHSKT-CGTREYRCD----CGTL  192 (477)
Q Consensus       122 ~~~C--~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~--C~K~F~~~s~L~~H~r~-~gekpy~C~----Cgk~  192 (477)
                      +|.|  +.|       ++.|.....|..|+++|+++++|+|++  |++.|.....|..|+++ ++   |.|.    |++.
T Consensus         1 p~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~   70 (85)
T 2j7j_A            1 MYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFV   70 (85)
T ss_dssp             CEECCSTTC-------CCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCE
T ss_pred             CccCCCCCC-------CcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCc
Confidence            5889  888       999999999999999999999999998  99999999999999999 65   9994    9999


Q ss_pred             ccChhHHHHHHHH
Q 011807          193 FSRKDSFITHRAF  205 (477)
Q Consensus       193 F~~~~~L~~H~~~  205 (477)
                      |.+...|++|+++
T Consensus        71 f~~~~~l~~H~~~   83 (85)
T 2j7j_A           71 GKTWTLYLKHVAE   83 (85)
T ss_dssp             ESSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHh
Confidence            9999999999875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=6.1e-13  Score=111.92  Aligned_cols=67  Identities=15%  Similarity=0.188  Sum_probs=61.6

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhh-hc---cccccccccccccccCChhHhhhh-hcc-cCCcceecC-CC
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFC-RK---HGERKWKCEKCSKVYAVQSDWKAH-SKT-CGTREYRCD-CG  190 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r-~H---tgekpf~C~~C~K~F~~~s~L~~H-~r~-~gekpy~C~-Cg  190 (477)
                      .++++|.|.+|       ++.|..+..|..|++ +|   ++++||+|.+|+|.|.....|..| +++ ++++||.|. +.
T Consensus        14 ~gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            48899999999       999999999999998 59   678999999999999999999999 788 899999998 54


Q ss_pred             C
Q 011807          191 T  191 (477)
Q Consensus       191 k  191 (477)
                      +
T Consensus        87 ~   87 (102)
T 2ghf_A           87 R   87 (102)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=7.6e-13  Score=109.80  Aligned_cols=70  Identities=16%  Similarity=0.291  Sum_probs=63.8

Q ss_pred             CCcccCchhhhhhhhhcccccccccccccccc-CChhHhhhhhcccCCcceecC-CCCcccChhHHHHH-HHH
Q 011807          136 SRALGDLTGIKKHFCRKHGERKWKCEKCSKVY-AVQSDWKAHSKTCGTREYRCD-CGTLFSRKDSFITH-RAF  205 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F-~~~s~L~~H~r~~gekpy~C~-Cgk~F~~~~~L~~H-~~~  205 (477)
                      ...|.....|..|+++|+++++|+|++|+|.| ....+|+.|+++|++++|.|+ |+|.|..+..|++| +++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~   85 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN   85 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHh
Confidence            35667788899999999999999999999999 999999999999989999999 99999999999888 554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.30  E-value=1e-12  Score=102.57  Aligned_cols=61  Identities=20%  Similarity=0.492  Sum_probs=56.5

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcce
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREY  185 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy  185 (477)
                      .++++|.|.+|       ++.|.....|..|+++|+++++|+|.+|++.|.....|.+|+++ ++++||
T Consensus        13 ~~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            47889999999       99999999999999999999999999999999999999999999 888886

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.29  E-value=1.4e-12  Score=101.48  Aligned_cols=58  Identities=28%  Similarity=0.652  Sum_probs=46.1

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHH
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      +.++|+++++|+|.+|++.|.....|+.|+++ +++++|+|+ |++.|.+...|++|+++
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            45677888888888888888888888888888 778888888 88888888888777765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=3.6e-12  Score=98.41  Aligned_cols=62  Identities=19%  Similarity=0.322  Sum_probs=37.5

Q ss_pred             cCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      +.++++|.|.+|++.|.....|..|+++|+              ++++|.|.+|       ++.|.....|..|+++|++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHC--------------TDRPFKCNYC-------SFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGC--------------CSCSEECSSS-------SCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcC--------------CCCCEeCCCC-------CCccCCHHHHHHHHHHHhC
Confidence            344556666666666666666666666665              5556666665       5666666666666666666


Q ss_pred             ccc
Q 011807          155 ERK  157 (477)
Q Consensus       155 ekp  157 (477)
                      ++|
T Consensus        63 ~~p   65 (70)
T 1x5w_A           63 DMS   65 (70)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=4.5e-12  Score=98.47  Aligned_cols=63  Identities=25%  Similarity=0.423  Sum_probs=43.1

Q ss_pred             ccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhh
Q 011807           72 PKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCR  151 (477)
Q Consensus        72 ~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~  151 (477)
                      .++|.++++|.|.+|++.|.....|..|+++|.              ++++|.|++|       ++.|.....|..|+++
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT--------------GEKPYKCLEC-------GKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG--------------CSCCEECSSS-------CCEESSHHHHHHHHHH
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcC--------------CCCCeECCCC-------CcccCCHHHHHHHHHh
Confidence            345666667777777777777777777777665              6666777766       6777777777777776


Q ss_pred             cccc
Q 011807          152 KHGE  155 (477)
Q Consensus       152 Htge  155 (477)
                      |+++
T Consensus        65 H~~~   68 (72)
T 1x6e_A           65 HTSG   68 (72)
T ss_dssp             HHSS
T ss_pred             cCCC
Confidence            6655

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=2.6e-12  Score=99.20  Aligned_cols=61  Identities=21%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcce
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREY  185 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy  185 (477)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|.+|+++ +++++.
T Consensus         5 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            5 SSGHPEKCSEC-------SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCSEECSSS-------SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            37788888888       88888888888888888888888888888888888888888888 777764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=2.9e-12  Score=97.53  Aligned_cols=56  Identities=34%  Similarity=0.682  Sum_probs=44.6

Q ss_pred             hhccccccccccccccccCChhHhhhhhcc-c--CCcceecC-CCCcccChhHHHHHHHH
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKT-C--GTREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~--gekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      ++|+++++|+|++|++.|.....|..|+++ |  ++++|.|+ |++.|.+...|++|+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            567788888888888888888888888877 5  67888888 88888888888887765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.23  E-value=5.5e-12  Score=102.47  Aligned_cols=55  Identities=15%  Similarity=0.346  Sum_probs=34.7

Q ss_pred             hhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHH
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRA  204 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~  204 (477)
                      ..+..+++|.|++|+|.|.....|++|+++ ++++||.|+ |++.|.++..|++|++
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCc
Confidence            345555666666666666666666666666 566666666 6666666666666653

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=3e-13  Score=104.49  Aligned_cols=69  Identities=12%  Similarity=0.168  Sum_probs=63.5

Q ss_pred             hhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhH
Q 011807           93 DQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSD  172 (477)
Q Consensus        93 ~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~  172 (477)
                      ...|..|+++|.              ++++|.|++|       ++.|.....|..       +++|+|.+|++.|.....
T Consensus         3 ~~~l~~H~~~h~--------------~~~~~~C~~C-------~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~   54 (73)
T 2ctu_A            3 SGSSGKRQKIHL--------------GDRSQKCSKC-------GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAA   54 (73)
T ss_dssp             CCSCCCCCCCCC--------------CCSEEECSSS-------CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCS
T ss_pred             chhHHHHHHHhC--------------CCCCeeCCcc-------cchhCCHHHhCc-------CCCCCCCCCChhhcCHHH
Confidence            456778888887              8999999999       999999999887       889999999999999999


Q ss_pred             hhhhhcc-cCCcceecC-C
Q 011807          173 WKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       173 L~~H~r~-~gekpy~C~-C  189 (477)
                      |..|+++ +++++|.|+ |
T Consensus        55 l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           55 LNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHhhcCCCCCCCCCC
Confidence            9999999 899999998 7

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.20  E-value=1.3e-12  Score=112.94  Aligned_cols=81  Identities=15%  Similarity=0.233  Sum_probs=71.2

Q ss_pred             CCceecCCCCcccc------ChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhh
Q 011807           78 TNRFVCEVCNKGFQ------RDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCR  151 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~------~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~  151 (477)
                      ++.+.|++|.+.|.      ....|..|+ .|+              ++++|.|++|       ++.|.....|..|+++
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~--------------~~~~~~C~~C-------~k~f~~~~~l~~H~~~   96 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK--------------AISQFVCPLC-------LMPFSSSVSLKQHIRY   96 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH--------------HHCSEECTTT-------CCEESSHHHHHHHHHH
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhC--------------CCCCeECCCC-------CcccCCHhHHHHHHHH
Confidence            46788999887776      556677776 576              8999999999       9999999999999999


Q ss_pred             ccccccccccccccccCChhHhhhhhcc-cCC
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      |  +++|+|++|++.|.....|++|+++ ++.
T Consensus        97 H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           97 T--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             T--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             C--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            9  8999999999999999999999999 654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.19  E-value=9.5e-12  Score=91.67  Aligned_cols=44  Identities=20%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             CCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc
Q 011807          136 SRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++
T Consensus        11 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C           11 GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555444

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.18  E-value=8e-12  Score=92.07  Aligned_cols=53  Identities=25%  Similarity=0.518  Sum_probs=47.2

Q ss_pred             ccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHHh
Q 011807          154 GERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAFC  206 (477)
Q Consensus       154 gekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~C  206 (477)
                      |+++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|.+...|.+|+++.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   55 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH   55 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHh
Confidence            57899999999999999999999999 899999999 999999999999999863

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.17  E-value=2.4e-11  Score=98.74  Aligned_cols=59  Identities=17%  Similarity=0.339  Sum_probs=36.1

Q ss_pred             CCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhh-hhccc
Q 011807           76 LATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHF-CRKHG  154 (477)
Q Consensus        76 ~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~-r~Htg  154 (477)
                      ...++|.|++|++.|.+...|.+|+++|+              ++++|.|++|       ++.|.....|.+|+ +.|++
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~--------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLRLLH--------------AAQVFPCKYC-------PATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHHTTS--------------CSSSEECTTS-------SCEESSHHHHHHHHHTTCTT
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhhhcc--------------CCCccCCCCC-------CCEeCCHHHHHHhCcccCcC
Confidence            34455666666666666666666666665              5666666666       66666666666664 34555


Q ss_pred             c
Q 011807          155 E  155 (477)
Q Consensus       155 e  155 (477)
                      |
T Consensus        83 E   83 (85)
T 2lv2_A           83 E   83 (85)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1e-11  Score=97.71  Aligned_cols=53  Identities=25%  Similarity=0.595  Sum_probs=37.7

Q ss_pred             ccccccccccccccccCChhHhhhhhcc-cC---CcceecC-CCCcccChhHHHHHHH
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKT-CG---TREYRCD-CGTLFSRKDSFITHRA  204 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~-~g---ekpy~C~-Cgk~F~~~~~L~~H~~  204 (477)
                      |+++++|+|.+|++.|.....|.+|+++ ++   +++|.|+ |++.|.+...|++|++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHH
Confidence            5677777777777777777777777777 43   6777777 7777777777766654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=4.1e-11  Score=94.13  Aligned_cols=63  Identities=17%  Similarity=0.455  Sum_probs=37.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHh-hcCCCccccccccccccc-cCcccCCCCCCCCCCCCCcccCchhhhh
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRR-GHNLPWKLKQRSNKDIIK-KKAYVCPEPSCVHHHPSRALGDLTGIKK  147 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~p~~c~~~~~~~~~~-~k~~~C~~C~C~~~~~~k~F~~~~~L~~  147 (477)
                      .|+++|.++++|.|.+|++.|.....|..|++ .|.              + +++|.|++|       ++.|.....|..
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~--------------~~~~~~~C~~C-------~~~f~~~~~L~~   63 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT--------------ENVAKFHCPHC-------DTVIARKSDLGV   63 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS--------------SSCSSEECSSS-------SCEESSHHHHHH
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcC--------------CCCCccCCCCC-------CCccCCHHHHHH
Confidence            45566666666666666666666666666665 343              3 256666665       666666666666


Q ss_pred             hhhhcc
Q 011807          148 HFCRKH  153 (477)
Q Consensus       148 H~r~Ht  153 (477)
                      |+++|+
T Consensus        64 H~~~~H   69 (77)
T 2ct1_A           64 HLRKQH   69 (77)
T ss_dssp             HHHHTS
T ss_pred             HHHHhC
Confidence            666543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.12  E-value=2.9e-11  Score=89.01  Aligned_cols=55  Identities=20%  Similarity=0.443  Sum_probs=46.9

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCc
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      +|.|++|       ++.|.....|..|+++|+++++|+|++|++.|.....|..|+++ ++++
T Consensus         1 p~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEEC-------GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCC-------cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5788888       88888888888888888888888888888888888888888888 5554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=4.7e-11  Score=93.91  Aligned_cols=30  Identities=23%  Similarity=0.535  Sum_probs=15.4

Q ss_pred             cCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |+++++|+|.+|++.|.....|..|+++|+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHA   31 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhh
Confidence            344455555555555555555555555553

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.4e-12  Score=98.46  Aligned_cols=69  Identities=16%  Similarity=0.191  Sum_probs=62.9

Q ss_pred             hhhcCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhh
Q 011807           67 VIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIK  146 (477)
Q Consensus        67 ~~~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~  146 (477)
                      .+..|+++|.++++|.|.+|++.|.....|..                     +++|.|++|       ++.|.....|.
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~---------------------~~~~~C~~C-------~~~f~~~~~l~   56 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR---------------------RKTPMCEKC-------RKDSCQEAALN   56 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC---------------------SSSCCCHHH-------HHTCSCCCSSC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc---------------------CCCCCCCCC-------ChhhcCHHHHH
Confidence            45678899999999999999999998887764                     368999999       99999999999


Q ss_pred             hhhhhcccccccccccc
Q 011807          147 KHFCRKHGERKWKCEKC  163 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C  163 (477)
                      .|+++|+++++|+|++|
T Consensus        57 ~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           57 KDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSSCCCCCCCSSCCCC
T ss_pred             HHHHhhcCCCCCCCCCC
Confidence            99999999999999998

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.10  E-value=5.3e-11  Score=87.57  Aligned_cols=56  Identities=21%  Similarity=0.457  Sum_probs=53.7

Q ss_pred             ceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      +|.|.+|++.|.....|..|+++|+              ++++|.|++|       ++.|.....|..|+++|+++|
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT--------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS--------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC--------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccC
Confidence            5899999999999999999999998              8999999999       999999999999999999886

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=4e-11  Score=91.10  Aligned_cols=54  Identities=20%  Similarity=0.462  Sum_probs=29.4

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhh-c-cccccccccccccccCChhHhhhhhcc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCR-K-HGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~-H-tgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++++|.|++|       ++.|.....|..|++. | .++++|+|++|++.|.....|..|+++
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~   62 (66)
T 2drp_A            7 GEHTYRCKVC-------SRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI   62 (66)
T ss_dssp             ETTEEECTTT-------CCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCcceECCCC-------cchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHH
Confidence            4555555555       5555555555555554 4 355555555555555555555555554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=7e-11  Score=96.17  Aligned_cols=61  Identities=16%  Similarity=0.242  Sum_probs=50.5

Q ss_pred             ceecCCCCccccChhHHHHHHhh-cCCCccccccccccccccCc--------ccCCCCCCCCCCCCCcccCchhhhhhhh
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRG-HNLPWKLKQRSNKDIIKKKA--------YVCPEPSCVHHHPSRALGDLTGIKKHFC  150 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~-H~~p~~c~~~~~~~~~~~k~--------~~C~~C~C~~~~~~k~F~~~~~L~~H~r  150 (477)
                      .|.|.+|++.|.....|..|+++ |.              ++++        |.|.+|       ++.|.....|..|++
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~--------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHV--------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIR   83 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTT--------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhcc--------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHH
Confidence            57899999999999999999998 76              5555        778877       788888888888888


Q ss_pred             hcccccccccc
Q 011807          151 RKHGERKWKCE  161 (477)
Q Consensus       151 ~Htgekpf~C~  161 (477)
                      +|++++||+|+
T Consensus        84 ~H~~~k~~~C~   94 (95)
T 2ej4_A           84 VHTGEKSGPSS   94 (95)
T ss_dssp             HHHTCCCCSSC
T ss_pred             hcCCCCCCCCC
Confidence            88888888875

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.07  E-value=7.6e-11  Score=87.78  Aligned_cols=52  Identities=19%  Similarity=0.540  Sum_probs=42.5

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|++.
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   52 (60)
T 2adr_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK   52 (60)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcCcCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            46888887       88888888888888888888888888888888888888888643

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.3e-10  Score=94.50  Aligned_cols=62  Identities=11%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhh-cccccc--------ccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCR-KHGERK--------WKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~-Htgekp--------f~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      ...|.|.+|       ++.|.....|..|+++ |.++++        |.|.+|++.|.....|+.|+++ +++++|.|+
T Consensus        23 ~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           23 QLSRPKKSC-------DRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             CSSSSCCCC-------CCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             cCCCccccc-------ccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            345789998       9999999999999998 999888        9999999999999999999999 899999995

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.02  E-value=1.2e-10  Score=90.26  Aligned_cols=55  Identities=24%  Similarity=0.549  Sum_probs=39.8

Q ss_pred             hcccccccccc--ccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHH
Q 011807          151 RKHGERKWKCE--KCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       151 ~Htgekpf~C~--~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      .|.++++|+|+  .|++.|.....|..|+++ +++++|.|+ |++.|.+...|.+|+++
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            46667777775  477777777777777777 677777777 77777777777777653

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.02  E-value=9.4e-11  Score=82.63  Aligned_cols=43  Identities=21%  Similarity=0.485  Sum_probs=39.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1e-10  Score=82.46  Aligned_cols=43  Identities=21%  Similarity=0.413  Sum_probs=39.1

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|+|.|.....|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.01  E-value=2.3e-10  Score=85.15  Aligned_cols=56  Identities=34%  Similarity=0.631  Sum_probs=52.2

Q ss_pred             CceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhh-hhcccc
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHF-CRKHGE  155 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~-r~Htge  155 (477)
                      ++|.|.+|++.|.....|..|+++|+              ++++|.|++|       ++.|.....|..|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT--------------NEKPYPCGLC-------NRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT--------------SSCSEECTTT-------CCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC--------------CCCCccCCCC-------CCccCCHHHHHHHHHHHcCCc
Confidence            47999999999999999999999998              8899999999       99999999999996 688765

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.01  E-value=8.6e-11  Score=82.71  Aligned_cols=43  Identities=16%  Similarity=0.413  Sum_probs=39.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ ++++||+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.01  E-value=9.2e-11  Score=82.75  Aligned_cols=43  Identities=16%  Similarity=0.413  Sum_probs=39.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|+|.|.....|.+|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=9.6e-11  Score=82.46  Aligned_cols=43  Identities=16%  Similarity=0.341  Sum_probs=39.5

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.1e-10  Score=82.16  Aligned_cols=43  Identities=19%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=9.3e-11  Score=82.64  Aligned_cols=43  Identities=16%  Similarity=0.402  Sum_probs=39.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.00  E-value=9.5e-11  Score=82.58  Aligned_cols=43  Identities=26%  Similarity=0.504  Sum_probs=39.5

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.1e-10  Score=82.25  Aligned_cols=43  Identities=23%  Similarity=0.467  Sum_probs=39.8

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=7e-11  Score=83.40  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=39.8

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            688899999999999999999999999999999 889999998 7

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1e-10  Score=82.48  Aligned_cols=43  Identities=19%  Similarity=0.393  Sum_probs=39.2

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|+|.|.....|++|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            488899999999999999999999999999999 889999998 7

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=81.91  Aligned_cols=43  Identities=26%  Similarity=0.461  Sum_probs=39.5

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.3e-10  Score=81.76  Aligned_cols=43  Identities=21%  Similarity=0.437  Sum_probs=39.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.6e-10  Score=81.53  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=38.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478889999999999999999999999999999 889999998 7

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.4e-10  Score=81.73  Aligned_cols=43  Identities=16%  Similarity=0.353  Sum_probs=38.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|+|.|.....|++|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478889999999999999999999999999999 889999998 7

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.1e-10  Score=82.25  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=39.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=82.01  Aligned_cols=43  Identities=16%  Similarity=0.410  Sum_probs=39.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.1e-10  Score=82.20  Aligned_cols=43  Identities=21%  Similarity=0.351  Sum_probs=39.0

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999998 789999998 7

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.2e-10  Score=82.07  Aligned_cols=43  Identities=23%  Similarity=0.469  Sum_probs=40.2

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            688999999999999999999999999999999 889999998 7

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1e-10  Score=82.43  Aligned_cols=43  Identities=19%  Similarity=0.380  Sum_probs=39.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            688899999999999999999999999999999 889999998 6

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.1e-10  Score=82.14  Aligned_cols=43  Identities=19%  Similarity=0.360  Sum_probs=39.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|+.|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.1e-10  Score=82.24  Aligned_cols=43  Identities=19%  Similarity=0.396  Sum_probs=39.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|++.|.....|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1e-10  Score=82.47  Aligned_cols=43  Identities=12%  Similarity=0.327  Sum_probs=39.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.2e-10  Score=82.05  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=38.8

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578889999999999999999999999999998 789999998 7

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.2e-10  Score=82.03  Aligned_cols=43  Identities=21%  Similarity=0.420  Sum_probs=38.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 788999998 7

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=81.47  Aligned_cols=43  Identities=21%  Similarity=0.387  Sum_probs=38.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478889999999999999999999999999998 888999998 7

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1e-10  Score=82.28  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=38.9

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|+|.|.....|++|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999998 889999998 7

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.1e-10  Score=82.19  Aligned_cols=43  Identities=19%  Similarity=0.410  Sum_probs=39.1

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1e-10  Score=82.38  Aligned_cols=43  Identities=19%  Similarity=0.363  Sum_probs=39.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|+|.|.....|.+|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 899999998 7

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.97  E-value=1.4e-10  Score=81.85  Aligned_cols=43  Identities=23%  Similarity=0.397  Sum_probs=38.2

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|+|.|.....|.+|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478889999999999999999999999999988 888999998 7

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.97  E-value=1.5e-10  Score=81.48  Aligned_cols=43  Identities=19%  Similarity=0.359  Sum_probs=39.0

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|++.|.....|++|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            588899999999999999999999999999999 789999998 7

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.2e-10  Score=81.24  Aligned_cols=42  Identities=19%  Similarity=0.330  Sum_probs=36.4

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      |+++|+++++|+|.+|+|.|.....|+.|+++ +++++|.|+ |
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888898899888888888888888 788888887 7

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.4e-10  Score=81.64  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=38.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478889999999999999999999999999988 788999998 7

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1e-10  Score=82.46  Aligned_cols=43  Identities=23%  Similarity=0.458  Sum_probs=38.8

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578889999999999999999999999999988 889999998 7

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.1e-10  Score=82.34  Aligned_cols=43  Identities=23%  Similarity=0.384  Sum_probs=38.8

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 789999998 7

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.1e-10  Score=82.20  Aligned_cols=43  Identities=23%  Similarity=0.444  Sum_probs=38.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|++.|.....|..|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588889999999999999999999999999998 888999998 7

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.3e-10  Score=81.84  Aligned_cols=43  Identities=21%  Similarity=0.430  Sum_probs=39.1

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ +++++|+|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999998 889999998 7

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.96  E-value=7.2e-11  Score=89.41  Aligned_cols=53  Identities=21%  Similarity=0.355  Sum_probs=46.1

Q ss_pred             hhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHH
Q 011807          145 IKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFI  200 (477)
Q Consensus       145 L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~  200 (477)
                      |..|+++|++++||+|++|++.|.....|.   ++ +++++|.|+ |++.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            678999999999999999999999988886   66 789999999 999998876653

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.7e-10  Score=81.29  Aligned_cols=43  Identities=21%  Similarity=0.427  Sum_probs=39.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999997 5

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.9e-10  Score=81.24  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=38.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|+|.|.....|++|+++ +++++|+|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478889999999999999999999999999998 888999998 7

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.4e-10  Score=81.62  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=38.5

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +|+++|+++++|+|++|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578889999999999999999999999999988 788999998 7

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.4e-10  Score=81.76  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=39.2

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999999 889999998 7

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.95  E-value=2e-10  Score=81.00  Aligned_cols=43  Identities=14%  Similarity=0.251  Sum_probs=37.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477888899999999999999999999999888 788999988 7

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.2e-10  Score=80.89  Aligned_cols=43  Identities=14%  Similarity=0.311  Sum_probs=38.9

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhc-c-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSK-T-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r-~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|++ + +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            58889999999999999999999999999999 7 788999998 7

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.8e-10  Score=81.13  Aligned_cols=43  Identities=30%  Similarity=0.478  Sum_probs=39.1

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|+|+ |
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            478899999999999999999999999999999 889999998 7

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.9e-10  Score=81.02  Aligned_cols=43  Identities=12%  Similarity=0.234  Sum_probs=38.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|++.|.....|..|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478889999999999999999999999999998 889999998 7

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.1e-10  Score=80.77  Aligned_cols=43  Identities=23%  Similarity=0.442  Sum_probs=38.1

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            478889999999999999999999999999888 788999998 7

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.92  E-value=6.6e-10  Score=85.97  Aligned_cols=44  Identities=16%  Similarity=0.476  Sum_probs=24.7

Q ss_pred             CCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc
Q 011807          136 SRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++.|.....|..|+++|+++++|+|.+|++.|.....|.+|+++
T Consensus        28 ~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           28 DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            55555555555555555555555555555555555555555544

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=4.3e-10  Score=82.40  Aligned_cols=44  Identities=18%  Similarity=0.339  Sum_probs=24.6

Q ss_pred             ccccccccccccccccCChhHhhhhhc-c-cCCcceecC-CCCcccC
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSK-T-CGTREYRCD-CGTLFSR  195 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r-~-~gekpy~C~-Cgk~F~~  195 (477)
                      |.++++|+|++|++.|.....|++|++ + +++++|.|+ |++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            445555555555555555555555554 4 455555555 5555543

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.8e-10  Score=80.20  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=37.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      .|+++|+++++|+|++|+|.|.....|+.|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            477888888999999999999999999999888 788889887 7

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.5e-10  Score=79.75  Aligned_cols=42  Identities=19%  Similarity=0.418  Sum_probs=37.9

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478889999999999999999999999999998 889999997

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.2e-10  Score=76.93  Aligned_cols=41  Identities=17%  Similarity=0.454  Sum_probs=38.2

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            478899999999999999999999999999999 89999988

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.90  E-value=4.4e-10  Score=77.43  Aligned_cols=41  Identities=20%  Similarity=0.460  Sum_probs=37.5

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      |+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            67889999999999999999999999999999 889999984

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=8.9e-10  Score=83.99  Aligned_cols=52  Identities=17%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccc-ccccccCChhHhhhhhcc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCE-KCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~-~C~K~F~~~s~L~~H~r~  179 (477)
                      ++++|.|.+|       ++.|. ...|..|+++ ++++||+|+ +|++.|..+..|..|+++
T Consensus         7 ~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            7 GKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            3445555555       55555 5555555555 555555555 555555555555555554

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.7e-10  Score=78.51  Aligned_cols=42  Identities=17%  Similarity=0.420  Sum_probs=38.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.4e-10  Score=77.66  Aligned_cols=42  Identities=19%  Similarity=0.370  Sum_probs=39.0

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            588999999999999999999999999999999 899999985

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=4.2e-10  Score=85.83  Aligned_cols=56  Identities=21%  Similarity=0.502  Sum_probs=51.4

Q ss_pred             ccccccccccccccccCChhHhhhhhcccCCcceecC--CCCcccChhHHHHHHHH-hhh
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCD--CGTLFSRKDSFITHRAF-CDA  208 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~~gekpy~C~--Cgk~F~~~~~L~~H~~~-C~k  208 (477)
                      ..+++||+|.+|++.|. ...|+.|+++++++||.|+  |++.|..++.|+.|+++ |.+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            45789999999999999 9999999988899999997  99999999999999997 554

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=5.7e-10  Score=78.50  Aligned_cols=42  Identities=24%  Similarity=0.447  Sum_probs=38.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=6.1e-10  Score=78.43  Aligned_cols=42  Identities=21%  Similarity=0.479  Sum_probs=38.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            588899999999999999999999999999999 789999986

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=4.7e-10  Score=78.06  Aligned_cols=42  Identities=24%  Similarity=0.453  Sum_probs=39.5

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|++|++.|.....|..|+++ +++++|+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 899999995

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.87  E-value=5.2e-10  Score=81.88  Aligned_cols=51  Identities=16%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             CCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCccee
Q 011807          136 SRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYR  186 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~  186 (477)
                      ++.|.....|..|+++|+++++|.|.+|++.|...+.|..|+++ ++++||+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            68899999999999999999999999999999999999999999 8999984

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.4e-10  Score=76.49  Aligned_cols=41  Identities=15%  Similarity=0.325  Sum_probs=37.1

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      |+++|+++++|+|.+|++.|.....|.+|+++ +++++|+|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67889999999999999999999999999999 889999984

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.4e-10  Score=78.15  Aligned_cols=42  Identities=19%  Similarity=0.421  Sum_probs=38.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6e-10  Score=78.39  Aligned_cols=42  Identities=21%  Similarity=0.464  Sum_probs=38.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.8e-10  Score=78.12  Aligned_cols=42  Identities=24%  Similarity=0.436  Sum_probs=38.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=6.8e-10  Score=78.19  Aligned_cols=42  Identities=21%  Similarity=0.444  Sum_probs=38.5

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.4e-10  Score=78.74  Aligned_cols=42  Identities=24%  Similarity=0.468  Sum_probs=38.9

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999996

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.3e-10  Score=78.30  Aligned_cols=42  Identities=24%  Similarity=0.457  Sum_probs=38.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=5.1e-10  Score=78.75  Aligned_cols=42  Identities=24%  Similarity=0.472  Sum_probs=38.8

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.5e-10  Score=78.10  Aligned_cols=42  Identities=19%  Similarity=0.415  Sum_probs=38.5

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            588899999999999999999999999999999 789999985

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.7e-10  Score=78.16  Aligned_cols=42  Identities=21%  Similarity=0.450  Sum_probs=38.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|.+|+++ +++++|+|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.6e-10  Score=78.43  Aligned_cols=42  Identities=24%  Similarity=0.478  Sum_probs=38.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.5e-10  Score=77.63  Aligned_cols=42  Identities=21%  Similarity=0.488  Sum_probs=38.9

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|++.|....+|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 889999985

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.85  E-value=5.6e-10  Score=78.66  Aligned_cols=42  Identities=19%  Similarity=0.479  Sum_probs=38.2

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=7.4e-10  Score=78.00  Aligned_cols=42  Identities=17%  Similarity=0.419  Sum_probs=38.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478899999999999999999999999999999 889999985

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=9e-10  Score=77.65  Aligned_cols=42  Identities=26%  Similarity=0.468  Sum_probs=37.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|++|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            478889999999999999999999999999998 788999986

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.3e-10  Score=78.76  Aligned_cols=42  Identities=14%  Similarity=0.324  Sum_probs=38.9

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.4e-10  Score=78.72  Aligned_cols=42  Identities=24%  Similarity=0.490  Sum_probs=38.9

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|+|.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999996

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=6.7e-10  Score=78.04  Aligned_cols=42  Identities=19%  Similarity=0.480  Sum_probs=38.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999995

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=6.4e-10  Score=78.33  Aligned_cols=42  Identities=19%  Similarity=0.441  Sum_probs=38.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|+.|+++ +++++|+|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=6.8e-10  Score=78.01  Aligned_cols=42  Identities=21%  Similarity=0.479  Sum_probs=38.0

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578899999999999999999999999999999 889999985

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.8e-09  Score=74.99  Aligned_cols=45  Identities=24%  Similarity=0.385  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS--------------CSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            47789999999999999999999999999999998              8999999987

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=8.5e-10  Score=76.03  Aligned_cols=40  Identities=20%  Similarity=0.376  Sum_probs=36.7

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      |+++|+++++|+|++|++.|.....|+.|+++ +++++|+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            67889999999999999999999999999999 88999987

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=7.1e-10  Score=77.23  Aligned_cols=42  Identities=17%  Similarity=0.400  Sum_probs=38.7

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            588999999999999999999999999999999 889999985

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.1e-09  Score=74.68  Aligned_cols=45  Identities=22%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS--------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.84  E-value=1.4e-09  Score=84.02  Aligned_cols=54  Identities=19%  Similarity=0.458  Sum_probs=39.9

Q ss_pred             ccCcccCCC--CCCCCCCCCCcccCchhhhhhhhhccccccccccc--cccccCChhHhhhhhcc
Q 011807          119 KKKAYVCPE--PSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEK--CSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       119 ~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~--C~K~F~~~s~L~~H~r~  179 (477)
                      ..++|.|.+  |       ++.|.....|..|+++|+++++|+|.+  |++.|.....|.+|+++
T Consensus        14 ~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           14 RIRSHICSHPGC-------GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCEECSSTTT-------CCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccCceeCCCCCC-------ccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            556777776  6       777777777777777777777777754  77777777777777764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=8.8e-10  Score=77.62  Aligned_cols=42  Identities=19%  Similarity=0.429  Sum_probs=37.9

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578889999999999999999999999999999 889999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=8.4e-10  Score=77.53  Aligned_cols=42  Identities=21%  Similarity=0.491  Sum_probs=39.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|++|+|.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588999999999999999999999999999999 899999995

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2.8e-09  Score=74.78  Aligned_cols=45  Identities=24%  Similarity=0.301  Sum_probs=42.4

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC--------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC--------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998              8999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.83  E-value=7.8e-10  Score=77.90  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKEC-------GKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSS-------CCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCceECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=76.99  Aligned_cols=42  Identities=17%  Similarity=0.448  Sum_probs=37.1

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|.+|+++ +++++|.|+
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            367889999999999999999999999999998 788999985

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.83  E-value=3.3e-09  Score=74.43  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT--------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS--------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.83  E-value=3.2e-09  Score=74.58  Aligned_cols=45  Identities=20%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS--------------SSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC--------------CCCCcCCCCC
Confidence            47789999999999999999999999999999998              8999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=3.1e-09  Score=74.67  Aligned_cols=45  Identities=27%  Similarity=0.304  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      -|+++|.++++|+|.+|++.|.....|.+|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT--------------TCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            36788999999999999999999999999999998              8999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=76.93  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=37.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|.+|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDC-------GKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSS-------CCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCeeCccc-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999998

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.83  E-value=7.8e-10  Score=77.79  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=37.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNEC-------GKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSS-------CCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCcCcCCCCC-------cchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=7.3e-10  Score=77.18  Aligned_cols=42  Identities=21%  Similarity=0.402  Sum_probs=38.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|++++||+|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999984

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=7e-10  Score=76.37  Aligned_cols=40  Identities=23%  Similarity=0.420  Sum_probs=37.0

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      |+++|+++++|+|++|++.|.....|..|+++ +++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            77889999999999999999999999999999 89999988

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.83  E-value=1e-09  Score=77.24  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVEC-------GKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSS-------CCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCcccCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=8.8e-10  Score=77.53  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=37.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGEC-------GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTT-------CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999998

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.2e-09  Score=74.55  Aligned_cols=45  Identities=22%  Similarity=0.305  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC--------------CCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.5e-09  Score=74.40  Aligned_cols=45  Identities=24%  Similarity=0.318  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT--------------TCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            36788999999999999999999999999999998              8999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.7e-09  Score=74.25  Aligned_cols=45  Identities=29%  Similarity=0.420  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS--------------GKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS--------------SCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.4e-09  Score=74.34  Aligned_cols=45  Identities=20%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT--------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT--------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=9.9e-10  Score=77.16  Aligned_cols=38  Identities=21%  Similarity=0.317  Sum_probs=37.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|.+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            9 GEKPYKCNEC-------GKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCTTCCTTT-------CCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999998

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.6e-09  Score=74.38  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|.+|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC--------------CSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            36788999999999999999999999999999998              8999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.2e-09  Score=73.84  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=41.3

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      |+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA--------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT--------------SSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            5678999999999999999999999999999998              8999999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.3e-09  Score=74.49  Aligned_cols=45  Identities=22%  Similarity=0.297  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC--------------CCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.8e-09  Score=74.19  Aligned_cols=45  Identities=20%  Similarity=0.383  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS--------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.2e-09  Score=74.45  Aligned_cols=45  Identities=22%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS--------------CCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            47789999999999999999999999999999998              8999999987

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=7.8e-10  Score=77.70  Aligned_cols=42  Identities=21%  Similarity=0.477  Sum_probs=38.1

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|+.|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            588899999999999999999999999999999 889999985

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=9.6e-10  Score=77.22  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            9 GEKPYKCSDC-------GKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SCCSCBCSSS-------CCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCccCCcc-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=3.3e-09  Score=74.43  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT--------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS--------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.1e-09  Score=77.11  Aligned_cols=42  Identities=21%  Similarity=0.416  Sum_probs=31.5

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      ++++|+++++|+|++|+|.|.....|++|+++ +++++|+|+ |
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34567777777777777777777777777777 677777776 6

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.1e-10  Score=77.25  Aligned_cols=42  Identities=12%  Similarity=0.252  Sum_probs=39.0

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            688999999999999999999999999999999 889999984

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.81  E-value=9.9e-10  Score=75.50  Aligned_cols=40  Identities=15%  Similarity=0.353  Sum_probs=36.6

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      |+++|+++++|+|.+|++.|.....|+.|+++ ++++||.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            67889999999999999999999999999999 88999988

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=5.1e-10  Score=88.40  Aligned_cols=65  Identities=25%  Similarity=0.406  Sum_probs=58.5

Q ss_pred             chhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHHhhhh
Q 011807          142 LTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAFCDAL  209 (477)
Q Consensus       142 ~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~C~k~  209 (477)
                      +..|..|+++|.+++++.|.+|++.| ...+|..|+ . +++++|.|+ |++.|. ...|..|+++|.+.
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             chHHHhhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            45788999999999999999999999 499999999 6 999999999 999987 58999999988764

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=3.9e-09  Score=74.03  Aligned_cols=45  Identities=22%  Similarity=0.265  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV--------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC--------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=8e-10  Score=77.84  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=38.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 889999986

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.8e-10  Score=77.80  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=37.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            9 GERPYICTVC-------GKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECTTT-------CCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.81  E-value=4e-09  Score=73.96  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS--------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT--------------SCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            36788999999999999999999999999999998              8999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.4e-09  Score=73.76  Aligned_cols=45  Identities=24%  Similarity=0.334  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC--------------CCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4e-09  Score=74.08  Aligned_cols=45  Identities=22%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT--------------AEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT--------------CCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.81  E-value=4.4e-09  Score=73.93  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=42.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .++++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT--------------REKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC--------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=4.4e-09  Score=73.86  Aligned_cols=45  Identities=27%  Similarity=0.377  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC--------------CSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=4.2e-09  Score=74.07  Aligned_cols=45  Identities=24%  Similarity=0.340  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS--------------CSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=3.7e-09  Score=74.23  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS--------------SSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999987

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.80  E-value=2.1e-10  Score=86.78  Aligned_cols=58  Identities=14%  Similarity=0.293  Sum_probs=50.6

Q ss_pred             HHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhh
Q 011807           96 LQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKA  175 (477)
Q Consensus        96 L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~  175 (477)
                      |..|+++|+              ++++|.|++|       ++.|.....|.   ++|+++++|+|.+|++.|....++..
T Consensus         2 L~~h~~~H~--------------~~k~~~C~~C-------~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~   57 (62)
T 1vd4_A            2 IETDERDST--------------NRASFKCPVC-------SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMP   57 (62)
T ss_dssp             CCCCSSSCC--------------SSSEEECSSS-------CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSC
T ss_pred             hhhHHHHcC--------------CCCCccCCCC-------CchhccHHHhH---hhcCCCCCEECCCCCCccccCccccc
Confidence            456777887              8999999999       99999988886   89999999999999999998887766


Q ss_pred             hh
Q 011807          176 HS  177 (477)
Q Consensus       176 H~  177 (477)
                      +.
T Consensus        58 ~~   59 (62)
T 1vd4_A           58 KK   59 (62)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.3e-09  Score=73.89  Aligned_cols=45  Identities=24%  Similarity=0.353  Sum_probs=42.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT--------------KQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS--------------CCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999986

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=3.9e-09  Score=74.13  Aligned_cols=45  Identities=27%  Similarity=0.364  Sum_probs=42.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT--------------TSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=3.7e-09  Score=74.22  Aligned_cols=45  Identities=22%  Similarity=0.412  Sum_probs=42.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT--------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC--------------SCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC--------------CCCCCCCCCC
Confidence            36788999999999999999999999999999998              8999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.2e-09  Score=73.96  Aligned_cols=45  Identities=27%  Similarity=0.378  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS--------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.4e-09  Score=73.85  Aligned_cols=45  Identities=24%  Similarity=0.349  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT--------------GYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT--------------CCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999987

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=6.7e-10  Score=78.13  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 789999986

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.3e-09  Score=76.72  Aligned_cols=41  Identities=17%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             hhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          149 FCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       149 ~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      +++|+++++|+|.+|+|.|.....|..|+++ +++++|.|+ |
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4566677777777777777777777777777 667777776 5

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=3.3e-09  Score=74.52  Aligned_cols=45  Identities=24%  Similarity=0.333  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT--------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH--------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=3.6e-09  Score=74.29  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHH--------------CCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.7e-09  Score=75.32  Aligned_cols=42  Identities=14%  Similarity=0.242  Sum_probs=37.4

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      .|+++|+++++|+|.+|+|.|.....|..|+++ +++++|+|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            377889999999999999999999999999999 889999985

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.4e-09  Score=76.65  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKC  163 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C  163 (477)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            9 GEKPYKCMEC-------GKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCSSSBTTT-------TBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8999999999       9999999999999999999999999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=5.1e-09  Score=73.43  Aligned_cols=45  Identities=22%  Similarity=0.273  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM--------------GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC--------------CSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=2.3e-09  Score=78.49  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhh-hccccccccccccccccCC
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFC-RKHGERKWKCEKCSKVYAV  169 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r-~Htgekpf~C~~C~K~F~~  169 (477)
                      .++++|.|++|       ++.|.....|..|++ +|+++++|+|.+|++.|.+
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            48899999999       999999999999997 9999999999999999975

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.78  E-value=5.5e-09  Score=80.59  Aligned_cols=57  Identities=19%  Similarity=0.417  Sum_probs=52.1

Q ss_pred             cCCCCceecCC--CCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC--CCCCCCCCCCcccCchhhhhhhh
Q 011807           75 LLATNRFVCEV--CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE--PSCVHHHPSRALGDLTGIKKHFC  150 (477)
Q Consensus        75 ~~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~r  150 (477)
                      ....++|.|.+  |++.|.....|..|+++|+              ++++|.|.+  |       ++.|.....|..|++
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~~~C-------~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT--------------GEKPFSCSWKGC-------ERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHS--------------SSCSEECCCTTC-------CCEESSHHHHHHHTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcC--------------CCCCccCCCCCC-------CcccCCHHHHHhHhh
Confidence            44567899998  9999999999999999998              899999975  8       999999999999998


Q ss_pred             hc
Q 011807          151 RK  152 (477)
Q Consensus       151 ~H  152 (477)
                      +|
T Consensus        71 ~H   72 (72)
T 2epa_A           71 TH   72 (72)
T ss_dssp             TC
T ss_pred             cC
Confidence            76

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=5.6e-09  Score=73.30  Aligned_cols=45  Identities=22%  Similarity=0.298  Sum_probs=41.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|+++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT--------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            47788999999999999999999999999999998              8999999875

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=5e-09  Score=73.57  Aligned_cols=45  Identities=18%  Similarity=0.085  Sum_probs=42.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|+|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM--------------GQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS--------------CCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            36788999999999999999999999999999998              8999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=3.9e-09  Score=74.19  Aligned_cols=45  Identities=22%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF--------------REKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHH--------------STTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHc--------------CCCCCCCCCC
Confidence            47789999999999999999999999999999997              8999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=2e-09  Score=75.34  Aligned_cols=40  Identities=18%  Similarity=0.391  Sum_probs=27.7

Q ss_pred             hccccccccccccccccCChhHhhhhhcc-cCCcceecC-CC
Q 011807          151 RKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CG  190 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cg  190 (477)
                      .|+++++|+|.+|+|.|.....|.+|+++ +++++|.|+ ||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            46666777777777777777777777766 666777776 64

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=1.4e-09  Score=76.62  Aligned_cols=42  Identities=17%  Similarity=0.340  Sum_probs=37.0

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cC-CcceecC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CG-TREYRCD  188 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~g-ekpy~C~  188 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ ++ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            478889999999999999999999999999988 77 8999884

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.7e-09  Score=75.44  Aligned_cols=41  Identities=22%  Similarity=0.430  Sum_probs=38.3

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            588999999999999999999999999999999 89999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.3e-09  Score=73.92  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS--------------SCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.2e-09  Score=74.06  Aligned_cols=45  Identities=24%  Similarity=0.397  Sum_probs=42.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .++++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT--------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH--------------CCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHc--------------CCCCCCCCCC
Confidence            36788999999999999999999999999999998              8999999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.76  E-value=2.9e-09  Score=75.79  Aligned_cols=40  Identities=18%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSK  165 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K  165 (477)
                      .+++|.|.+|       ++.|.....|..|+++|+++++|+|.+|+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            9 TRKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCcCeeCCCC-------CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4455555555       555555555555555555555555555543

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=7.5e-09  Score=72.80  Aligned_cols=45  Identities=22%  Similarity=0.269  Sum_probs=42.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHh-hcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRR-GHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|++ +|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~--------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT--------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT--------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC--------------CCCCCCCCCC
Confidence            47789999999999999999999999999999 998              8899999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=9e-09  Score=72.22  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=41.0

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      ++++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS--------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            4678899999999999999999999999999998              8999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=7.9e-09  Score=72.60  Aligned_cols=45  Identities=24%  Similarity=0.324  Sum_probs=41.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT--------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC--------------CCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            46788999999999999999999999999999998              8999999875

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=4.2e-09  Score=74.13  Aligned_cols=40  Identities=25%  Similarity=0.511  Sum_probs=31.6

Q ss_pred             hhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          149 FCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       149 ~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +++|+++++|+|.+|+|.|.....|+.|+++ +++++|+|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            5677788888888888888888888888877 777888875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.3e-09  Score=74.44  Aligned_cols=42  Identities=14%  Similarity=0.343  Sum_probs=33.3

Q ss_pred             hhhhcccccccccc--ccccccCChhHhhhhhcc-cCCcceecC-C
Q 011807          148 HFCRKHGERKWKCE--KCSKVYAVQSDWKAHSKT-CGTREYRCD-C  189 (477)
Q Consensus       148 H~r~Htgekpf~C~--~C~K~F~~~s~L~~H~r~-~gekpy~C~-C  189 (477)
                      |.++|+++++|+|.  +|++.|.....|.+|+++ +++++|+|+ |
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55677888888887  788888888888888888 678888887 6

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.70  E-value=5.1e-09  Score=74.48  Aligned_cols=41  Identities=17%  Similarity=0.413  Sum_probs=38.7

Q ss_pred             hccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCC
Q 011807          151 RKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGT  191 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk  191 (477)
                      .|.++++|+|.+|++.|.....|.+|+++ +++++|.|+ |+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            46789999999999999999999999999 899999999 986

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.3e-09  Score=72.24  Aligned_cols=44  Identities=20%  Similarity=0.285  Sum_probs=40.9

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      .+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT--------------REKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH--------------HCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            4578899999999999999999999999999998              8999999987

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.6e-09  Score=73.49  Aligned_cols=41  Identities=15%  Similarity=0.442  Sum_probs=33.0

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      +.++|+++++|+|.+|+|.|.....|..|+++ +++++|.|.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            45677888888888888888888888888888 778888874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.8e-08  Score=70.74  Aligned_cols=44  Identities=25%  Similarity=0.395  Sum_probs=41.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|+++++|+|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS--------------CCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            46788999999999999999999999999999998              899999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.9e-08  Score=70.38  Aligned_cols=44  Identities=27%  Similarity=0.417  Sum_probs=41.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC--------------SSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            47788999999999999999999999999999998              899999975

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.9e-08  Score=70.49  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=40.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT--------------TSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC--------------CCCCCCCCC
Confidence            47788999999999999999999999999999998              889999975

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=7.1e-09  Score=70.90  Aligned_cols=38  Identities=18%  Similarity=0.510  Sum_probs=30.8

Q ss_pred             hhccccccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      ++|+++++|+|++|++.|.....|..|+++ ++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            467788888888888888888888888888 77888877

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1.9e-08  Score=70.37  Aligned_cols=44  Identities=20%  Similarity=0.351  Sum_probs=41.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT--------------GENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS--------------SSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            47788999999999999999999999999999998              899999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.67  E-value=1.7e-08  Score=70.81  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=41.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT--------------TSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            47788999999999999999999999999999998              889999975

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=2e-08  Score=70.47  Aligned_cols=44  Identities=27%  Similarity=0.456  Sum_probs=41.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS--------------SSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcC--------------CCCCCCCCC
Confidence            47788999999999999999999999999999998              899999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=2.1e-08  Score=70.23  Aligned_cols=44  Identities=25%  Similarity=0.404  Sum_probs=40.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS--------------SCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC--------------CCCCcCCCC
Confidence            47788999999999999999999999999999998              899999975

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.7e-08  Score=70.65  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=41.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC--------------CCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC--------------CCCCCCCCC
Confidence            47788999999999999999999999999999998              899999975

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.8e-08  Score=70.81  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=40.7

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .++++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS--------------GERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT--------------SCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC--------------CCCCCCCCC
Confidence            36788999999999999999999999999999998              889999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=6.8e-09  Score=72.87  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=35.5

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEK  162 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~  162 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            9 GGKPYQCNEC-------GKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSCSSSCCSS-------CCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.8e-08  Score=70.73  Aligned_cols=44  Identities=25%  Similarity=0.370  Sum_probs=40.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS--------------SSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC--------------CCCCCCCCC
Confidence            36788999999999999999999999999999998              899999975

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=2e-08  Score=70.38  Aligned_cols=44  Identities=25%  Similarity=0.409  Sum_probs=40.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT--------------GERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS--------------CCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            46788999999999999999999999999999998              889999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.66  E-value=2.1e-08  Score=68.74  Aligned_cols=42  Identities=24%  Similarity=0.429  Sum_probs=38.9

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      |+++|+++++|.|.+|++.|.+...|..|+++|+              ++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHA--------------GESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC--------------CCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC--------------CCCCCCCC
Confidence            4678899999999999999999999999999998              88999984

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=2.2e-08  Score=70.17  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=40.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC--------------SCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC--------------CCCCCCCCC
Confidence            46788999999999999999999999999999998              889999975

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=7.2e-09  Score=72.81  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=35.5

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEK  162 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~  162 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            9 GEKPFQCEEC-------GKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSBCCSSS-------CCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCcCCCCCCC-------CcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            8999999999       999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=2.1e-08  Score=70.29  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=40.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS--------------CSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC--------------CCCCCCCCC
Confidence            47788999999999999999999999999999998              889999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=2.5e-08  Score=69.79  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=40.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS--------------SCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC--------------CCCCCCCCC
Confidence            46788999999999999999999999999999998              899999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=2.2e-08  Score=70.20  Aligned_cols=44  Identities=23%  Similarity=0.409  Sum_probs=40.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC--------------CCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            46788999999999999999999999999999998              889999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=2.6e-08  Score=69.91  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=40.7

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT--------------GERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS--------------SCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            36788999999999999999999999999999998              899999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=9.7e-09  Score=71.22  Aligned_cols=39  Identities=13%  Similarity=0.333  Sum_probs=25.6

Q ss_pred             hhccccccccccccccccCChhHhhhhhcc-cCCcceecC
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD  188 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~  188 (477)
                      ++|+++++|+|.+|++.|.....|..|+++ +++++|.|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            356666666666666666666666666666 566666663

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=2.6e-08  Score=69.83  Aligned_cols=44  Identities=23%  Similarity=0.324  Sum_probs=40.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC--------------CSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            46788999999999999999999999999999998              889999975

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=2.7e-08  Score=69.79  Aligned_cols=44  Identities=25%  Similarity=0.327  Sum_probs=40.6

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccc-cCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIK-KKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~-~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              + +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT--------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC--------------SCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC--------------CCCCCCCCCC
Confidence            36788999999999999999999999999999998              8 89999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=3e-08  Score=69.56  Aligned_cols=43  Identities=26%  Similarity=0.436  Sum_probs=40.0

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      ++++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC--------------CSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            5678999999999999999999999999999998              889999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=2.5e-08  Score=69.02  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=40.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT--------------GESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC--------------CSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC--------------CCCCCCCC
Confidence            47788999999999999999999999999999998              88999985

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.5e-08  Score=69.94  Aligned_cols=44  Identities=25%  Similarity=0.379  Sum_probs=40.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT--------------SSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC--------------CCCCCCCCC
Confidence            36788999999999999999999999999999998              899999975

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=3e-08  Score=67.86  Aligned_cols=42  Identities=17%  Similarity=0.340  Sum_probs=38.7

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      |+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT--------------VKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS--------------CCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC--------------CCCCCCCC
Confidence            4678899999999999999999999999999998              88999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2e-08  Score=70.29  Aligned_cols=44  Identities=30%  Similarity=0.393  Sum_probs=40.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHH--------------SCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcC--------------CCCCCCCCC
Confidence            36788999999999999999999999999999998              889999975

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=3e-08  Score=68.59  Aligned_cols=43  Identities=23%  Similarity=0.418  Sum_probs=40.0

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT--------------GESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT--------------TSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC--------------CCCCCCCC
Confidence            47788999999999999999999999999999998              88999985

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.7e-08  Score=68.94  Aligned_cols=43  Identities=23%  Similarity=0.351  Sum_probs=39.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS--------------GQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS--------------SSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC--------------CCCCCCCC
Confidence            46789999999999999999999999999999998              88999985

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.2e-08  Score=69.22  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=40.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT--------------GKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC--------------CCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            47789999999999999999999999999999998              889999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=2.9e-08  Score=69.29  Aligned_cols=42  Identities=21%  Similarity=0.465  Sum_probs=39.7

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      ..|+++++|.|.+|++.|.....|..|+++|+              ++++|.|++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~--------------~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD--------------GSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS--------------CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc--------------CCCCCCCcCC
Confidence            46788999999999999999999999999998              8999999998

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3e-08  Score=69.58  Aligned_cols=44  Identities=23%  Similarity=0.332  Sum_probs=40.7

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT--------------QETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS--------------SCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            46788999999999999999999999999999998              889999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.2e-08  Score=69.38  Aligned_cols=44  Identities=20%  Similarity=0.406  Sum_probs=40.6

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT--------------GERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHT--------------CCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcC--------------CCCCCCCCC
Confidence            47788999999999999999999999999999998              889999964

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.6e-08  Score=69.34  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=34.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKC  160 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C  160 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            8 GEKPYRCDQC-------GKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             SCCSBCCTTT-------TCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCCCeeCCCc-------cchhCCHHHHHHHHHHhCCCCCCCC
Confidence            8999999999       9999999999999999999999998

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=4.3e-08  Score=67.95  Aligned_cols=43  Identities=26%  Similarity=0.398  Sum_probs=39.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA--------------RKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC--------------CCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcC--------------CCCCCCCC
Confidence            46788999999999999999999999999999998              88999984

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=4.5e-08  Score=67.85  Aligned_cols=43  Identities=21%  Similarity=0.347  Sum_probs=39.9

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA--------------AKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGC--------------CCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcC--------------CCCCcCCC
Confidence            46788999999999999999999999999999998              88999984

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.58  E-value=7.2e-09  Score=75.67  Aligned_cols=52  Identities=12%  Similarity=0.168  Sum_probs=48.3

Q ss_pred             CccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccc
Q 011807           87 NKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWK  159 (477)
Q Consensus        87 gk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~  159 (477)
                      +|.|.....|..|+++|+              ++++|.|.+|       ++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~--------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ--------------SEQPATCPIC-------YAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT--------------SSCCEECTTT-------CCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC--------------CCCCccCCCC-------CcccCCHHHHHHHHHHhccCCCCC
Confidence            467888889999999998              8999999999       999999999999999999999984

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=4e-08  Score=67.44  Aligned_cols=41  Identities=24%  Similarity=0.366  Sum_probs=38.3

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVC  125 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C  125 (477)
                      |.++|.++++|+|.+|++.|.....|..|+++|+              ++++|+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT--------------GSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS--------------CCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC--------------CCCCCCC
Confidence            5678999999999999999999999999999998              8899988

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=1.4e-08  Score=82.67  Aligned_cols=61  Identities=16%  Similarity=0.223  Sum_probs=42.1

Q ss_pred             hcCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhh
Q 011807           69 ALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKH  148 (477)
Q Consensus        69 ~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H  148 (477)
                      .++.++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|..|       .    ....|..|
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht--------------~ekp~~C~~~-------~----~~~~~~~~   68 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN--------------EEFQKRAKRQ-------E----RRKQLLSK   68 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH--------------HHHHHHCCCC-------S----CCCCCCCC
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC--------------CCCCcccchh-------h----hHHHHHhh
Confidence            344566777777777777777777777777777776              6777777665       2    24556666


Q ss_pred             hhhccc
Q 011807          149 FCRKHG  154 (477)
Q Consensus       149 ~r~Htg  154 (477)
                      .++|.+
T Consensus        69 ~~~~~~   74 (88)
T 1x6f_A           69 QKYADG   74 (88)
T ss_dssp             CCCCCC
T ss_pred             hccccc
Confidence            666665

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2.9e-08  Score=69.67  Aligned_cols=44  Identities=30%  Similarity=0.407  Sum_probs=40.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS--------------REKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH--------------HTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC--------------CCCCCCCCC
Confidence            46788999999999999999999999999999998              889999975

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=5.2e-08  Score=68.68  Aligned_cols=44  Identities=27%  Similarity=0.378  Sum_probs=40.9

Q ss_pred             CccccCCCCceecC--CCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCC
Q 011807           71 SPKTLLATNRFVCE--VCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEP  128 (477)
Q Consensus        71 ~~~~~~~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C  128 (477)
                      +.++|+++++|.|.  +|++.|.....|..|+++|+              ++++|+|.+|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS--------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC--------------CCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC--------------CCCCCCCCCC
Confidence            56788999999998  89999999999999999998              8999999987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.57  E-value=4.5e-08  Score=66.97  Aligned_cols=41  Identities=20%  Similarity=0.407  Sum_probs=38.3

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVC  125 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C  125 (477)
                      |.++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~--------------~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS--------------QSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTT--------------CCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcC--------------CCCCCCC
Confidence            5678899999999999999999999999999998              8899988

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=4.8e-08  Score=68.55  Aligned_cols=43  Identities=26%  Similarity=0.270  Sum_probs=39.6

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT--------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS--------------SCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC--------------CCCCCCCCC
Confidence            4678889999999999999999999999999998              899999975

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=4.9e-08  Score=68.10  Aligned_cols=43  Identities=28%  Similarity=0.403  Sum_probs=39.2

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      +.++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT--------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS--------------SCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhC--------------CCCCCCCCC
Confidence            4567889999999999999999999999999998              889999963

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=5.2e-08  Score=67.62  Aligned_cols=42  Identities=21%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      +.++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA--------------GESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT--------------TSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHC--------------CCCCCCCC
Confidence            5678899999999999999999999999999998              88999984

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=6e-08  Score=67.11  Aligned_cols=41  Identities=17%  Similarity=0.324  Sum_probs=38.0

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      ++|+++++|.|.+|++.|.....|..|+++|+              ++++|.|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C~~   43 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTH--------------SDKSGPSSG   43 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT--------------CTTCSSSCC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhC--------------CCCCccCCC
Confidence            56888999999999999999999999999998              899999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=1.6e-08  Score=69.35  Aligned_cols=35  Identities=14%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKC  160 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C  160 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            8 GEKPYKCETC-------GARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             SSCSEECTTT-------CCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCEeCCCc-------ChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            8999999999       9999999999999999999999998

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.54  E-value=3.9e-08  Score=68.86  Aligned_cols=43  Identities=21%  Similarity=0.291  Sum_probs=40.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE--------------RTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHH--------------HSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhC--------------CCCCCCCC
Confidence            47788999999999999999999999999999998              88999996

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=1.1e-07  Score=66.11  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVC  125 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C  125 (477)
                      .|+++|.++++|+|.+|++.|.....|..|+++|+              ++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA--------------GVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS--------------SCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhc--------------CCCCCCC
Confidence            46788999999999999999999999999999998              8899887

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=5.3e-08  Score=67.50  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      .|+++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~--------------~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT--------------RKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC--------------CCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC--------------CCCCCCCC
Confidence            46788999999999999999999999999999998              88999983

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=1.1e-07  Score=64.85  Aligned_cols=39  Identities=23%  Similarity=0.415  Sum_probs=36.5

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccC
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVC  125 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C  125 (477)
                      ++|.++++|.|.+|++.|.....|..|+++|+              ++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT--------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC--------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC--------------CCCCcCC
Confidence            57888999999999999999999999999998              8899988

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.40  E-value=1.1e-07  Score=63.02  Aligned_cols=34  Identities=15%  Similarity=0.364  Sum_probs=30.1

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhcc-cC
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CG  181 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~g  181 (477)
                      |+++|++++||+|++|++.|.....|..|+++ ++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            78889999999999999999999999999888 44

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.39  E-value=8e-08  Score=64.85  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=18.9

Q ss_pred             ccccccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      |+++++|+|.+|++.|.....|..|+++ +++++|.|
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            3445555555555555555555555555 45555543

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.7e-07  Score=73.66  Aligned_cols=63  Identities=17%  Similarity=0.176  Sum_probs=33.6

Q ss_pred             hcCccccCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhh
Q 011807           69 ALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKH  148 (477)
Q Consensus        69 ~~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H  148 (477)
                      ..|.+++..++++.|..|++.|. ...|..|+ .|.              +++++.|+.|       ++.|. ...|..|
T Consensus         6 ~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c--------------~~~~~~C~~C-------~~~~~-~~~l~~H   61 (75)
T 2d9k_A            6 SGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC--------------GARTELCGNC-------GRNVL-VKDLKTH   61 (75)
T ss_dssp             SCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH--------------HHCEEECSSS-------CCEEE-TTGGGTH
T ss_pred             HhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc--------------CCCceEcccC-------CCcCc-HHHHHHH
Confidence            34445555555555555555552 55555555 444              5555555555       55444 3555555


Q ss_pred             hhhcccc
Q 011807          149 FCRKHGE  155 (477)
Q Consensus       149 ~r~Htge  155 (477)
                      +++|.++
T Consensus        62 ~~~c~~~   68 (75)
T 2d9k_A           62 PEVCGRE   68 (75)
T ss_dssp             HHHBTTB
T ss_pred             HHHccCC
Confidence            5555544

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=1.9e-08  Score=81.95  Aligned_cols=50  Identities=12%  Similarity=0.211  Sum_probs=41.8

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|..|.    ....|..|+++
T Consensus        22 ~~kpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~   71 (88)
T 1x6f_A           22 QNSTYQCKHC-------DSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY   71 (88)
T ss_dssp             CCSCEECSSS-------CCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC
T ss_pred             CCCCCcCCCC-------CCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc
Confidence            7889999998       89999999999999999999999987655    45667777777

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.1e-07  Score=63.15  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=29.2

Q ss_pred             hhccccccccccccccccCChhHhhhhhcc-cCCcc
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTRE  184 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekp  184 (477)
                      ++|+++++|+|.+|++.|.....|..|+++ ++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            568888888888898888888888888888 67664

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.29  E-value=2.6e-07  Score=71.51  Aligned_cols=36  Identities=14%  Similarity=0.243  Sum_probs=23.2

Q ss_pred             ccccccccccc--cccccCChhHhhhhh-cc-cCCcceec
Q 011807          152 KHGERKWKCEK--CSKVYAVQSDWKAHS-KT-CGTREYRC  187 (477)
Q Consensus       152 Htgekpf~C~~--C~K~F~~~s~L~~H~-r~-~gekpy~C  187 (477)
                      +++||||+|.+  |+|+|.+.++|++|+ ++ +++|||.|
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            45666666654  777776666676665 34 56666666

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.24  E-value=3.3e-07  Score=59.77  Aligned_cols=33  Identities=18%  Similarity=0.479  Sum_probs=23.7

Q ss_pred             ccccccccccccccccCChhHhhhhhcc-cCCcc
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTRE  184 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekp  184 (477)
                      |+++++|+|.+|++.|.....|..|+++ ++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5677777777777777777777777777 55553

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.24  E-value=8.2e-07  Score=59.72  Aligned_cols=38  Identities=21%  Similarity=0.447  Sum_probs=33.7

Q ss_pred             cCCCCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCC
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCP  126 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~  126 (477)
                      |+++++|.|.+|++.|.....|..|+++|+              ++++|.|.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~--------------~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR--------------RDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC--------------CSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC--------------CCccceec
Confidence            456789999999999999999999999998              88888763

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.23  E-value=4.2e-07  Score=59.43  Aligned_cols=33  Identities=21%  Similarity=0.494  Sum_probs=24.0

Q ss_pred             ccccccccccccccccCChhHhhhhhcc-cCCcc
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTRE  184 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekp  184 (477)
                      |+++++|+|.+|++.|.....|.+|+++ ++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            6677777777777777777777777777 55553

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=1.8e-06  Score=57.06  Aligned_cols=32  Identities=22%  Similarity=0.525  Sum_probs=30.3

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++|.++++|.|.+|++.|.....|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            57888999999999999999999999999997

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.10  E-value=1.1e-06  Score=57.00  Aligned_cols=23  Identities=9%  Similarity=-0.036  Sum_probs=11.8

Q ss_pred             CCcccCchhhhhhhhhccccccc
Q 011807          136 SRALGDLTGIKKHFCRKHGERKW  158 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htgekpf  158 (477)
                      ++.|.....|..|+++|+++++|
T Consensus         9 ~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            9 PKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CchhCCHHHHHHHHHHhCCCCCC
Confidence            45555555555555555555544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=7.3e-07  Score=59.38  Aligned_cols=30  Identities=13%  Similarity=0.272  Sum_probs=24.3

Q ss_pred             hhccccccccccccccccCChhHhhhh-hcc
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAH-SKT  179 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H-~r~  179 (477)
                      ++|++++||+|.+|++.|.....|+.| +++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~   32 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQK   32 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHH
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            567888888888888888888888888 666

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.06  E-value=8.8e-07  Score=59.72  Aligned_cols=26  Identities=19%  Similarity=0.424  Sum_probs=19.2

Q ss_pred             ccccccccccccccccCChhHhhhhh
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHS  177 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~  177 (477)
                      +.+||||+|++|+|.|...++|++|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            35677777777777777777777776

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.04  E-value=3.7e-06  Score=54.74  Aligned_cols=31  Identities=26%  Similarity=0.494  Sum_probs=29.0

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +|.++++|.|.+|++.|.....|..|+++|+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            4678899999999999999999999999997

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=1.5e-06  Score=57.18  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=23.5

Q ss_pred             hccccccccccccccccCChhHhhhhhcc-cCC
Q 011807          151 RKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      .|+++++|+|.+|++.|.....|..|+++ +++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            46677777777777777777777777777 444

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=1.1e-06  Score=58.24  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=23.6

Q ss_pred             hhccccccccccccccccCCh-hHhhhhhcc-cCC
Q 011807          150 CRKHGERKWKCEKCSKVYAVQ-SDWKAHSKT-CGT  182 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~-s~L~~H~r~-~ge  182 (477)
                      ++|+++++|+|.+|++.|... ..|..|+++ +++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            356777777777777777777 777777776 444

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.04  E-value=3.5e-06  Score=54.68  Aligned_cols=31  Identities=26%  Similarity=0.466  Sum_probs=28.8

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +|.++++|.|.+|++.|.....|..|+++|+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            3678899999999999999999999999997

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.03  E-value=4e-06  Score=55.27  Aligned_cols=34  Identities=32%  Similarity=0.679  Sum_probs=32.0

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |.++|.++++|+|.+|++.|.....|..|+++|+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            5678999999999999999999999999999996

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.03  E-value=1.3e-06  Score=58.24  Aligned_cols=34  Identities=12%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             cccccccccc--ccccccCChhHhhhhhcc-cCCcce
Q 011807          152 KHGERKWKCE--KCSKVYAVQSDWKAHSKT-CGTREY  185 (477)
Q Consensus       152 Htgekpf~C~--~C~K~F~~~s~L~~H~r~-~gekpy  185 (477)
                      |+++++|+|.  .|++.|...+.|++|+++ +++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4456666666  366666666666666666 555554

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=1.7e-06  Score=56.89  Aligned_cols=32  Identities=22%  Similarity=0.394  Sum_probs=23.0

Q ss_pred             hccccccccccccccccCChhHhhhhhcc-cCC
Q 011807          151 RKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      .|+++++|+|.+|++.|.....|..|+++ +++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            46677777777777777777777777776 444

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.00  E-value=1.8e-06  Score=56.53  Aligned_cols=32  Identities=22%  Similarity=0.553  Sum_probs=22.7

Q ss_pred             hccccccccccccccccCChhHhhhhhcc-cCC
Q 011807          151 RKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      .|+++++|+|.+|++.|.....|..|+++ +++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            46677777777777777777777777776 444

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.00  E-value=2.9e-06  Score=65.68  Aligned_cols=38  Identities=11%  Similarity=0.093  Sum_probs=34.7

Q ss_pred             cccCcccCCC--CCCCCCCCCCcccCchhhhhhh-hhccccccccccc
Q 011807          118 IKKKAYVCPE--PSCVHHHPSRALGDLTGIKKHF-CRKHGERKWKCEK  162 (477)
Q Consensus       118 ~~~k~~~C~~--C~C~~~~~~k~F~~~~~L~~H~-r~Htgekpf~C~~  162 (477)
                      .++|||+|.+  |       +++|.....|..|+ ++|+++|||.|..
T Consensus        23 sGEKPYkC~~~~C-------gKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGC-------FAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTC-------CCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cCCCCeECCCCCc-------ChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            5899999976  7       99999999999997 6899999999965

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=2.9e-06  Score=55.53  Aligned_cols=32  Identities=16%  Similarity=0.377  Sum_probs=21.5

Q ss_pred             hccccccccccccccccCChhHhhhhhcc-cCC
Q 011807          151 RKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      .|+++++|+|.+|++.|.....|..|+++ ++|
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            35666777777777777777777777766 444

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.96  E-value=2.2e-06  Score=60.87  Aligned_cols=29  Identities=17%  Similarity=0.494  Sum_probs=22.6

Q ss_pred             hccccccccccccccccCChhHhhhhhc-c
Q 011807          151 RKHGERKWKCEKCSKVYAVQSDWKAHSK-T  179 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F~~~s~L~~H~r-~  179 (477)
                      +|+++|+|+|.+|+|.|....+|+.|++ +
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~   30 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHS   30 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHS
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhh
Confidence            4677888888888888888888888887 6

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=2.4e-06  Score=58.18  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=17.8

Q ss_pred             ccccccccccc--cccccCChhHhhhhhcc
Q 011807          152 KHGERKWKCEK--CSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       152 Htgekpf~C~~--C~K~F~~~s~L~~H~r~  179 (477)
                      ++++|||+|++  |+|.|..++.|++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            45566666654  66666666666666666

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.96  E-value=3.2e-06  Score=54.76  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=29.8

Q ss_pred             ccccccccccccCChhHhhhhhcc-cCCcceec
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRC  187 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C  187 (477)
                      |||+|++|++.|.....|..|+++ +++++|.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999999999999999999999 89999864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.90  E-value=2.1e-06  Score=60.53  Aligned_cols=39  Identities=15%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             hhhhhhhcccccccccc--ccccccCChhHhhhhhcc-cCCc
Q 011807          145 IKKHFCRKHGERKWKCE--KCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       145 L~~H~r~Htgekpf~C~--~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      +..|...|++++||+|.  +|+|.|...+.|+.|+++ +++|
T Consensus         6 ~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            44556678899999995  699999999999999888 5653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.89  E-value=1.7e-06  Score=55.63  Aligned_cols=30  Identities=17%  Similarity=0.255  Sum_probs=17.4

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhhccccccc
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKW  158 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf  158 (477)
                      +|.|++|       ++.|.....|..|+++|++++||
T Consensus         2 p~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPAC-------PKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSS-------CTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCC-------CcccCCHHHHHHHHHHHccCCCC
Confidence            4555555       55555555555565555555554

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=4.5e-06  Score=54.78  Aligned_cols=28  Identities=25%  Similarity=0.600  Sum_probs=18.2

Q ss_pred             ccccccccccccccccCChhHhhhhhcc
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |.++++|+|++|++.|.....|..|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHH
Confidence            4556666666666666666666666666

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=1e-05  Score=52.99  Aligned_cols=31  Identities=16%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      .|.++++|+|.+|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            5678899999999999999999999999997

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=1.1e-05  Score=52.86  Aligned_cols=32  Identities=22%  Similarity=0.449  Sum_probs=29.6

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ..|.++++|+|.+|++.|.....|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            35778899999999999999999999999997

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.85  E-value=7.2e-06  Score=62.96  Aligned_cols=28  Identities=18%  Similarity=0.373  Sum_probs=14.3

Q ss_pred             ccccccccccccccccCChhHhhhhhcc
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |.++|||+|.+|+|.|.....|++|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~   35 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQ   35 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhh
Confidence            3444555555555555555555555555

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=1.1e-05  Score=52.68  Aligned_cols=31  Identities=23%  Similarity=0.407  Sum_probs=29.1

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +|.++++|+|.+|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            5778899999999999999999999999997

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=9.1e-06  Score=53.58  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=29.7

Q ss_pred             cccCCCCceecCCCCccccCh-hHHHHHHhhcC
Q 011807           73 KTLLATNRFVCEVCNKGFQRD-QNLQLHRRGHN  104 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~-~~L~~H~r~H~  104 (477)
                      ++|.++++|.|.+|++.|... ..|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            467889999999999999999 99999999996

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.82  E-value=9.8e-06  Score=53.72  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             ccccCCCCceecCCCCccccChhHHHHH-HhhcC
Q 011807           72 PKTLLATNRFVCEVCNKGFQRDQNLQLH-RRGHN  104 (477)
Q Consensus        72 ~~~~~~~k~~~C~~Cgk~F~~~~~L~~H-~r~H~  104 (477)
                      +++|.++++|+|.+|++.|.....|..| +++|+
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            3578899999999999999999999999 88886

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.79  E-value=4.1e-06  Score=53.81  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=28.2

Q ss_pred             ccccccccccccCChhHhhhhhcc-cCCcce
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CGTREY  185 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~gekpy  185 (477)
                      |||+|.+|+|.|...+.|..|+++ ++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            589999999999999999999999 888887

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.79  E-value=1.5e-05  Score=52.04  Aligned_cols=31  Identities=23%  Similarity=0.510  Sum_probs=28.9

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      .|.++++|.|.+|++.|.....|..|+++|+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            4677899999999999999999999999997

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.75  E-value=1.3e-05  Score=53.09  Aligned_cols=30  Identities=23%  Similarity=0.694  Sum_probs=27.5

Q ss_pred             cCCCCceecC--CCCccccChhHHHHHHhhcC
Q 011807           75 LLATNRFVCE--VCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        75 ~~~~k~~~C~--~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |+++++|.|.  .|++.|.....|..|+++|+
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            4578899999  59999999999999999997

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=1.9e-05  Score=51.62  Aligned_cols=31  Identities=39%  Similarity=0.576  Sum_probs=28.5

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      .+..+++|.|.+|++.|.....|..|+++|+
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            3567889999999999999999999999997

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.72  E-value=9.8e-06  Score=53.74  Aligned_cols=31  Identities=29%  Similarity=0.543  Sum_probs=19.3

Q ss_pred             ccccccccccc--cccccCChhHhhhhhcc-cCC
Q 011807          152 KHGERKWKCEK--CSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       152 Htgekpf~C~~--C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      |+++++|+|.+  |+|.|...+.|..|+++ +++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            55666666663  66666666666666666 444

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.71  E-value=2.2e-05  Score=53.37  Aligned_cols=31  Identities=19%  Similarity=0.275  Sum_probs=28.3

Q ss_pred             ccCCCCceecCC--CCccccChhHHHHHHhhcC
Q 011807           74 TLLATNRFVCEV--CNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~  104 (477)
                      .+.++++|+|.+  |++.|.....|..|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            356789999986  9999999999999999997

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.69  E-value=2.1e-05  Score=55.60  Aligned_cols=31  Identities=19%  Similarity=0.495  Sum_probs=28.7

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHh-hcC
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRR-GHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~  104 (477)
                      +|+++++|.|.+|++.|.....|..|++ +|+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4778999999999999999999999999 897

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.68  E-value=2.5e-05  Score=47.58  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=24.9

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcC
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +++|.|.+|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468999999999999999999999884

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.66  E-value=1.7e-05  Score=53.26  Aligned_cols=26  Identities=35%  Similarity=0.729  Sum_probs=24.5

Q ss_pred             cCCCCceecCCCCccccChhHHHHHH
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHR  100 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~  100 (477)
                      +.++++|+|.+|+|.|.+..+|.+|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            56789999999999999999999998

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.65  E-value=2.2e-05  Score=48.05  Aligned_cols=27  Identities=30%  Similarity=0.687  Sum_probs=24.9

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcC
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +++|+|.+|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999999884

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.56  E-value=2e-05  Score=48.19  Aligned_cols=24  Identities=17%  Similarity=0.418  Sum_probs=14.0

Q ss_pred             ccccccccccccCChhHhhhhhcc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +||+|.+|++.|...+.|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            455666666666666666665554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.56  E-value=5e-05  Score=46.78  Aligned_cols=27  Identities=19%  Similarity=0.545  Sum_probs=25.4

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcC
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +++|.|.+|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            468999999999999999999999997

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.55  E-value=4.7e-05  Score=46.54  Aligned_cols=27  Identities=30%  Similarity=0.677  Sum_probs=25.1

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcC
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +++|.|.+|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999999986

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.54  E-value=2.9e-05  Score=47.93  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=10.8

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +|+|.+|++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHH
Confidence            34444444444444444444444

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.53  E-value=3.7e-05  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.728  Sum_probs=10.3

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +|+|.+|++.|.....|..|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHHH
Confidence            34444444444444444444444

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.53  E-value=5.3e-05  Score=46.55  Aligned_cols=26  Identities=38%  Similarity=0.712  Sum_probs=24.6

Q ss_pred             CceecCCCCccccChhHHHHHHhhcC
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++|.|.+|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            47999999999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.64  E-value=1.4e-05  Score=49.57  Aligned_cols=24  Identities=17%  Similarity=0.537  Sum_probs=12.6

Q ss_pred             ccccccccccccCChhHhhhhhcc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +||+|.+|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            445555555555555555555554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.48  E-value=3.6e-05  Score=47.09  Aligned_cols=24  Identities=21%  Similarity=0.684  Sum_probs=12.5

Q ss_pred             ccccccccccccCChhHhhhhhcc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++|+|.+|+|.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh
Confidence            445555555555555555555544

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.48  E-value=5.1e-05  Score=48.04  Aligned_cols=20  Identities=10%  Similarity=0.104  Sum_probs=9.8

Q ss_pred             CCcccCchhhhhhhhhcccc
Q 011807          136 SRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htge  155 (477)
                      ++.|.....|..|+++|+++
T Consensus        12 ~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A           12 DKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCCBSSSHHHHHHHGGGTCC
T ss_pred             CCccCCHHHHHHHHHHccCC
Confidence            44555555555555544443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.45  E-value=3.8e-05  Score=46.97  Aligned_cols=20  Identities=10%  Similarity=0.288  Sum_probs=9.3

Q ss_pred             CCcccCchhhhhhhhhcccc
Q 011807          136 SRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htge  155 (477)
                      ++.|.....|..|+++|+++
T Consensus         9 ~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            9 DKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCTTTHHHHHHHHHHSC
T ss_pred             CcccCCHHHHHHHHHHhccC
Confidence            44444444444444444443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.57  E-value=1.9e-05  Score=48.83  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=11.5

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ||+|.+|++.|....+|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            44555555555555555555444

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.42  E-value=7.2e-05  Score=49.39  Aligned_cols=30  Identities=23%  Similarity=0.541  Sum_probs=27.6

Q ss_pred             cCCCCceecCC--CCccccChhHHHHHHhhcC
Q 011807           75 LLATNRFVCEV--CNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        75 ~~~~k~~~C~~--Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++++++|.|.+  |++.|.....|..|+++|+
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            56789999995  9999999999999999997

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.41  E-value=5.8e-05  Score=46.49  Aligned_cols=24  Identities=17%  Similarity=0.565  Sum_probs=11.6

Q ss_pred             ccccccccccccCChhHhhhhhcc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++|.|.+|++.|.....|..|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            344444444444444444444444

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.39  E-value=6.4e-05  Score=46.15  Aligned_cols=20  Identities=5%  Similarity=0.067  Sum_probs=10.8

Q ss_pred             CCcccCchhhhhhhhhcccc
Q 011807          136 SRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htge  155 (477)
                      ++.|.....|..|+++|+++
T Consensus         9 ~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            9 PKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             SCEESCSHHHHHHHTGGGSC
T ss_pred             CchhCCHHHHHHHHHHhcCC
Confidence            55555555555555555544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.39  E-value=7.8e-05  Score=46.83  Aligned_cols=20  Identities=15%  Similarity=0.301  Sum_probs=9.7

Q ss_pred             CCcccCchhhhhhhhhcccc
Q 011807          136 SRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htge  155 (477)
                      ++.|.....|..|+++|+++
T Consensus        11 ~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A           11 GKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCSSHHHHHHHHTTTSCC
T ss_pred             CcccCCHhHHHHHHHHhcCC
Confidence            44444444444444444443

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.38  E-value=7.2e-05  Score=46.29  Aligned_cols=20  Identities=15%  Similarity=0.524  Sum_probs=10.1

Q ss_pred             cccccccccccCChhHhhhh
Q 011807          157 KWKCEKCSKVYAVQSDWKAH  176 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H  176 (477)
                      ||+|.+|++.|.....|..|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHH
Confidence            44555555555555555555

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.38  E-value=9.4e-05  Score=44.85  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=15.7

Q ss_pred             CcceecC-CCCcccChhHHHHHHHH
Q 011807          182 TREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       182 ekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      +++|.|+ |++.|.....|..|+++
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHH
Confidence            4566776 77777766666666653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.37  E-value=8.2e-05  Score=45.55  Aligned_cols=29  Identities=24%  Similarity=0.580  Sum_probs=26.8

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTT-------CCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCC-------CcccCCHHHHHHHHHHhcCCC
Confidence            47999999       999999999999999999875

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.48  E-value=2.6e-05  Score=46.98  Aligned_cols=26  Identities=38%  Similarity=0.768  Sum_probs=23.9

Q ss_pred             CceecCCCCccccChhHHHHHHhhcC
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++|.|.+|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47999999999999999999999873

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.36  E-value=7.7e-05  Score=45.60  Aligned_cols=26  Identities=35%  Similarity=0.618  Sum_probs=24.5

Q ss_pred             CceecCCCCccccChhHHHHHHhhcC
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++|.|.+|++.|.....|..|+++|+
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            47999999999999999999999996

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.36  E-value=0.00011  Score=46.39  Aligned_cols=29  Identities=24%  Similarity=0.593  Sum_probs=25.9

Q ss_pred             ccccccc--ccccccCChhHhhhhhcc-cCCc
Q 011807          155 ERKWKCE--KCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       155 ekpf~C~--~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      ++||+|.  .|++.|.....|..|+++ ++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            5799999  899999999999999999 5553

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.45  E-value=3e-05  Score=46.72  Aligned_cols=23  Identities=26%  Similarity=0.651  Sum_probs=12.5

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ||+|++|++.|.....|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            45555555555555555555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.33  E-value=9.8e-05  Score=44.54  Aligned_cols=22  Identities=23%  Similarity=0.662  Sum_probs=12.1

Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |+|.+|+|.|.....|..|+++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            4555555555555555555554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.31  E-value=0.00011  Score=46.13  Aligned_cols=28  Identities=25%  Similarity=0.667  Sum_probs=25.0

Q ss_pred             cccccc--ccccccCChhHhhhhhcc-cCCc
Q 011807          156 RKWKCE--KCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       156 kpf~C~--~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      +||+|.  +|++.|...+.|..|+++ ++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  999999999999999999 6654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.31  E-value=3.3e-05  Score=54.20  Aligned_cols=31  Identities=16%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             ccCcccCC--CCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          119 KKKAYVCP--EPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       119 ~~k~~~C~--~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      ++++|.|+  .|       ++.|.....|..|+++|+++|
T Consensus        15 ~~k~~~C~~~~C-------~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           15 PDKTFECLFPGC-------TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTC-------CCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCeECCCCCC-------CCccCCHHHHHHHHHHccCCC
Confidence            89999996  68       999999999999999999875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.30  E-value=9.4e-05  Score=45.09  Aligned_cols=28  Identities=29%  Similarity=0.544  Sum_probs=25.2

Q ss_pred             ccccccccccccCChhHhhhhhcc-cCCc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      |||+|.+|++.|.....|..|+++ ++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            589999999999999999999998 6653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.30  E-value=0.00011  Score=45.25  Aligned_cols=30  Identities=30%  Similarity=0.439  Sum_probs=27.4

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERK  157 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekp  157 (477)
                      ++|.|.+|       ++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYC-------EFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSS-------SCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCC-------CCccCCHHHHHHHHHHHccCCC
Confidence            47999999       9999999999999999998864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.28  E-value=0.00015  Score=55.44  Aligned_cols=40  Identities=8%  Similarity=0.054  Sum_probs=34.0

Q ss_pred             cccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccccccccccccc
Q 011807          118 IKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSK  165 (477)
Q Consensus       118 ~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K  165 (477)
                      .++|+|+|.+|       ++.|.....|..|+++|++++ ..|.+|+.
T Consensus         9 ~~ekpy~C~~C-------gK~F~~~s~L~~H~r~Htg~~-~~~~~~~~   48 (66)
T 2epp_A            9 REAGILPCGLC-------GKVFTDANRLRQHEAQHGVTS-LQLGYIDL   48 (66)
T ss_dssp             CCCCCCCCTTT-------CCCCSCHHHHHHHHHHHTTTS-CCCCSCCC
T ss_pred             CCccCcCCCCC-------CCccCCHHHHHhhhhhhCCCc-cccccccC
Confidence            47899999999       999999999999999999874 45555553

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.27  E-value=8.3e-05  Score=45.44  Aligned_cols=20  Identities=20%  Similarity=0.396  Sum_probs=10.4

Q ss_pred             CCcccCchhhhhhhhhcccc
Q 011807          136 SRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htge  155 (477)
                      ++.|.....|..|+++|+++
T Consensus         9 ~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            9 GKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             SCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCChhHHHHHHHHhcCC
Confidence            55555555555555555444

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.34  E-value=4.4e-05  Score=47.09  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=26.7

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      ++|.|++|       ++.|.....|..|+++|+++|
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMC-------GKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            57999999       999999999999999999875

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.32  E-value=4.6e-05  Score=47.12  Aligned_cols=30  Identities=30%  Similarity=0.558  Sum_probs=27.4

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      +++|.|.+|       ++.|.....|..|+++|+++|
T Consensus         1 ~k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHC-------QRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            368999999       999999999999999999874

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.12  E-value=0.00023  Score=43.92  Aligned_cols=29  Identities=28%  Similarity=0.309  Sum_probs=26.4

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhh-hhhccccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKH-FCRKHGER  156 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H-~r~Htgek  156 (477)
                      ++|.|..|       ++.|.....|..| +++|++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLC-------NRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTT-------CCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCccc-------CcccCChHHHHHHHHHHccCCC
Confidence            57999999       9999999999999 79999875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.04  E-value=0.00028  Score=42.42  Aligned_cols=27  Identities=15%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      +|.|.+|       ++.|.....|..|+++|+++
T Consensus         1 ~~~C~~C-------~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLC-------ERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSS-------CCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCC-------CCcCCCHHHHHHHHHHcCCC
Confidence            5889999       99999999999999999874

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.95  E-value=0.00041  Score=42.24  Aligned_cols=26  Identities=27%  Similarity=0.696  Sum_probs=24.3

Q ss_pred             CceecC--CCCccccChhHHHHHHhhcC
Q 011807           79 NRFVCE--VCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~--~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++|.|.  +|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            479999  99999999999999999986

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.74  E-value=0.00049  Score=41.89  Aligned_cols=23  Identities=17%  Similarity=0.564  Sum_probs=14.6

Q ss_pred             ccccc--ccccccCChhHhhhhhcc
Q 011807          157 KWKCE--KCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~--~C~K~F~~~s~L~~H~r~  179 (477)
                      +|+|.  +|++.|...+.|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            56666  666666666666666655

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.0021  Score=48.63  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=12.3

Q ss_pred             ceecC---CCCcccChhHHHHHHH
Q 011807          184 EYRCD---CGTLFSRKDSFITHRA  204 (477)
Q Consensus       184 py~C~---Cgk~F~~~~~L~~H~~  204 (477)
                      +|.|.   |++.+.....|..|++
T Consensus        38 ~~~C~W~~C~~~~~~~~~L~~Hir   61 (64)
T 1zw8_A           38 PLACNWEDCDFLGDDTASIVNHIN   61 (64)
T ss_dssp             CEECCCSSCCCEESSHHHHHHHHH
T ss_pred             CCEeeCCCCcCCCCChHHHHhhcc
Confidence            56663   6666665566666655

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0065  Score=45.86  Aligned_cols=52  Identities=13%  Similarity=0.320  Sum_probs=43.9

Q ss_pred             ccCCCCCCCCCCCCCcccCchhhhhhh-hhccccc------ccccc--ccccccCChhHhhhhhcc
Q 011807          123 YVCPEPSCVHHHPSRALGDLTGIKKHF-CRKHGER------KWKCE--KCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       123 ~~C~~C~C~~~~~~k~F~~~~~L~~H~-r~Htgek------pf~C~--~C~K~F~~~s~L~~H~r~  179 (477)
                      +.|..-+|     ++.|.+...|..|+ +.|.+.+      .|.|.  .|++.+.....|..|+++
T Consensus         2 l~C~W~~C-----~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            2 LKCKWKEC-----PESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCTTC-----CCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CeEeeCCC-----CCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            45655444     99999999999998 5787765      79996  799999999999999987

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.89  E-value=0.0024  Score=55.21  Aligned_cols=83  Identities=16%  Similarity=0.241  Sum_probs=48.4

Q ss_pred             CceecCCCCccccChhHHHHHH--hhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHR--RGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~--r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      +++.|.+|...|.+...+..|.  +.|..             ..+.|.+. ++....-.++.+...    .+...+.+.+
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~-------------~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~   92 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHAN-------------KVRRYMAI-NQGEDSVPAKKFKAA----PAEISDGEDR   92 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHH-------------HHHHHHHH-TTCCCCCSCCCCSCC----SSCCSSCCCT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHH-------------HHHHHhcc-cCcccCCCCCccCCC----ccccccCCCC
Confidence            4689999999999999999998  55641             11222221 100000002222211    1223445566


Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      .|.|.+|.+.|.....|..|...
T Consensus        93 ~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           93 SKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTS
T ss_pred             CeEcCCCCCEeCCHHHHHHHHCC
Confidence            77777777777777777777654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.67  E-value=0.0033  Score=53.92  Aligned_cols=30  Identities=17%  Similarity=0.404  Sum_probs=18.2

Q ss_pred             hhccccccccccccccccCChhHhhhhhcc
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ..|+|+++|.|..|+|.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            345566666666666666666666666554

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.32  E-value=0.0088  Score=42.03  Aligned_cols=27  Identities=19%  Similarity=0.584  Sum_probs=22.5

Q ss_pred             cceecC-CCCcccChhHHHHHHHH-hhhh
Q 011807          183 REYRCD-CGTLFSRKDSFITHRAF-CDAL  209 (477)
Q Consensus       183 kpy~C~-Cgk~F~~~~~L~~H~~~-C~k~  209 (477)
                      -+|.|+ |++.|.....|+.|++. |++.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcch
Confidence            578999 99999999999999986 5544

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.47  E-value=0.01  Score=51.14  Aligned_cols=74  Identities=16%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhh--hhcccc-cccccccc------ccccCChhHhhhhhcc-cCCcceecC-
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHF--CRKHGE-RKWKCEKC------SKVYAVQSDWKAHSKT-CGTREYRCD-  188 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~--r~Htge-kpf~C~~C------~K~F~~~s~L~~H~r~-~gekpy~C~-  188 (477)
                      .+++.|.+|       ...|.....+..|.  +.|... +.|.+..+      ++.|...    .+... .+.+.|.|+ 
T Consensus        30 ~~~~~C~~C-------~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVC-------SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTT-------TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETT
T ss_pred             CCCCcCcCC-------CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCC
Confidence            367899999       99999999999999  566543 45555211      2233221    12223 566789999 


Q ss_pred             CCCcccChhHHHHHHH
Q 011807          189 CGTLFSRKDSFITHRA  204 (477)
Q Consensus       189 Cgk~F~~~~~L~~H~~  204 (477)
                      |.+.|.....|..|..
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999999985

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.44  E-value=0.014  Score=52.39  Aligned_cols=82  Identities=20%  Similarity=0.451  Sum_probs=50.5

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhH
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDS  198 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~  198 (477)
                      ....|+.-||     ...+ ....|..|.. .-.-++..|+.|+..+ .+..|..|... ...+.-.|. |+..|.. ..
T Consensus        81 l~v~C~n~GC-----~~~~-~~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~  151 (170)
T 3hcs_A           81 LMVKCPNEGC-----LHKM-ELRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-ED  151 (170)
T ss_dssp             SEEECCSTTC-----CCEE-EGGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GG
T ss_pred             cccCCCCCCC-----Ccee-cHhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HH
Confidence            3445643344     4433 3455666653 3334567788888777 56678888865 777788888 8887754 46


Q ss_pred             HHHHHHHhhhhhc
Q 011807          199 FITHRAFCDALAE  211 (477)
Q Consensus       199 L~~H~~~C~k~f~  211 (477)
                      |..|..+|...+.
T Consensus       152 l~~H~~~~~~~~~  164 (170)
T 3hcs_A          152 KEIHDQNCPLALE  164 (170)
T ss_dssp             HHHHHTTCCC---
T ss_pred             HHhHHHhCcChhh
Confidence            7778777655443

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.23  E-value=0.025  Score=48.48  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=28.3

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ..++++++|.|.+|++.|.+...|..|+++..
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            45778899999999999999999999998653

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.43  E-value=0.13  Score=36.14  Aligned_cols=23  Identities=17%  Similarity=0.458  Sum_probs=13.1

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      .|.|+.|++.|.....|+.||+-
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhhh
Confidence            45555555555555555555553

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=89.62  E-value=0.12  Score=39.81  Aligned_cols=52  Identities=27%  Similarity=0.706  Sum_probs=29.5

Q ss_pred             cccccc-cccccccCChhHhhhhhcc-cCCcceecC-CCCcccChhHHHHHHHHhhh
Q 011807          155 ERKWKC-EKCSKVYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRKDSFITHRAFCDA  208 (477)
Q Consensus       155 ekpf~C-~~C~K~F~~~s~L~~H~r~-~gekpy~C~-Cgk~F~~~~~L~~H~~~C~k  208 (477)
                      -.+-.| ..|+..+. +.+|..|+.. ...+...|. |+..|.. ..|..|...|..
T Consensus        14 ~~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~~~Cp~   68 (76)
T 2yuc_A           14 FNVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHEGMCPQ   68 (76)
T ss_dssp             CSCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTTTSCTT
T ss_pred             CcccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHHhHCCC
Confidence            344556 45666553 3466666664 556666676 7666643 345666555443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=87.44  E-value=0.57  Score=41.70  Aligned_cols=57  Identities=21%  Similarity=0.312  Sum_probs=43.4

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc-cCCcce
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGTREY  185 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~gekpy  185 (477)
                      -++..|+.|       +..+ .+..|..|....-..+.-.|..|+..|. ..+|..|+.+ .|+.++
T Consensus       108 ~~~v~C~~C-------~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          108 FALMDCPQC-------QRPF-QKFHINIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             TSEEECTTT-------CCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             ceeeECCCC-------ChHH-HHHHHHHHhhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChhhh
Confidence            356778876       7766 6778999998888888999999999885 5688999998 777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	477
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.38
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.28
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.95
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.88
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.85
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.82
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.8
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.76
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.7
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.66
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.57
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.54
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.53
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.53
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.49
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.48
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.45
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.44
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.39
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.39
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.35
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.32
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.32
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.28
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.26
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.23
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.2
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.15
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.07
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.04
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.03
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.99
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.99
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.98
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.81
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.73
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.73
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.69
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.65
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.63
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.61
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.44
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.36
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.29
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.08
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.81
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.8
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.61
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.57
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.53
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.43
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.27
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.21
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.19
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.19
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.11
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.1
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.07
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.79
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.78
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	95.69
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.68
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.67
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.67
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.63
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.37
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.11
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.1
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.05
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.03
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.87
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.79
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.5
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.36
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.23
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.09
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.06
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.69
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	93.67
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	93.61
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.57
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.53
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.53
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.13
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	92.02
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.72
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.09
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	90.79
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.73
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.07
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	88.49
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	87.97
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	87.6
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	85.81
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	85.14
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.05
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	82.67
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	82.59
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	80.75

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.5e-14  Score=102.25  Aligned_cols=52  Identities=21%  Similarity=0.467  Sum_probs=32.9

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccccccccCChhHhhhhhcc
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ||+|.|+ |       ++.|.....|..|+++|+++|||+|.+|++.|...+.|.+|+++
T Consensus         1 EK~y~C~-C-------gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           1 DKLYPCQ-C-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCCEECT-T-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CcCCCCC-C-------CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            3566663 5       66666666666666666666666666666666666666666654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.9e-13  Score=95.71  Aligned_cols=53  Identities=17%  Similarity=0.288  Sum_probs=50.9

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCcccCCCCCCCCCCCCCcccCchhhhhhhhhc
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRK  152 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~H  152 (477)
                      ||+|+| +||+.|.....|..|+++|+              ++++|.|.+|       ++.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht--------------~ekpy~C~~C-------~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHL--------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHS--------------CCCSEECTTT-------SCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccc--------------cccCCcCCCc-------CCEecCHHHHHHHHhcC
Confidence            589999 59999999999999999998              9999999999       99999999999999987

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9.5e-11  Score=78.69  Aligned_cols=36  Identities=28%  Similarity=0.670  Sum_probs=33.6

Q ss_pred             hhhhhccccccccccccccccCChhHhhhhhcc-cCC
Q 011807          147 KHFCRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       147 ~H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      +|+++|++||||+|++|+|.|...++|.+|+++ +||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            689999999999999999999999999999999 775

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=2.7e-10  Score=75.91  Aligned_cols=33  Identities=15%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             hhhhccccccccccccccccCChhHhhhhhccc
Q 011807          148 HFCRKHGERKWKCEKCSKVYAVQSDWKAHSKTC  180 (477)
Q Consensus       148 H~r~Htgekpf~C~~C~K~F~~~s~L~~H~r~~  180 (477)
                      |.|+|+|||||+|.+|+|.|.++++|++|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            778999999999999999999999999999874

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.4e-10  Score=74.95  Aligned_cols=33  Identities=21%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             hhccccccccccccccccCChhHhhhhhcccCC
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKTCGT  182 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~~ge  182 (477)
                      |+|+|||||+|.+|+|.|...++|+.|+++|.+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            689999999999999999999999999998433

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5e-10  Score=72.42  Aligned_cols=32  Identities=25%  Similarity=0.567  Sum_probs=27.1

Q ss_pred             hccccccccccccccccCChhHhhhhhcc-cCC
Q 011807          151 RKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       151 ~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      +|+|||||+|.+|+|.|...++|.+|+++ +||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            58888888888888888888888888888 664

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=7.3e-10  Score=74.42  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=24.6

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhh-hccccccccccc
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFC-RKHGERKWKCEK  162 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r-~Htgekpf~C~~  162 (477)
                      +|||+|++|       ++.|.....|++|++ +|++||||+|++
T Consensus         3 ~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            567777776       677777777777754 577777777753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.8e-09  Score=72.47  Aligned_cols=37  Identities=27%  Similarity=0.666  Sum_probs=33.8

Q ss_pred             CCCceecCCCCccccChhHHHHHHh-hcCCCccccccccccccccCcccCCC
Q 011807           77 ATNRFVCEVCNKGFQRDQNLQLHRR-GHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        77 ~~k~~~C~~Cgk~F~~~~~L~~H~r-~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .+|+|+|.+|||.|....+|.+|++ +|+              ++|||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht--------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT--------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC--------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC--------------CCcCcCCcC
Confidence            4689999999999999999999986 798              999999974

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.2e-10  Score=72.75  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             hhccccccccccccccccCChhHhhhhhcc-cCC
Q 011807          150 CRKHGERKWKCEKCSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       150 r~Htgekpf~C~~C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      |+|+|||||+|++|+|.|.++.+|++|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            579999999999999999999999999876 654

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=2.2e-09  Score=70.21  Aligned_cols=29  Identities=21%  Similarity=0.545  Sum_probs=24.0

Q ss_pred             ccccccccccccccccCChhHhhhhhccc
Q 011807          152 KHGERKWKCEKCSKVYAVQSDWKAHSKTC  180 (477)
Q Consensus       152 Htgekpf~C~~C~K~F~~~s~L~~H~r~~  180 (477)
                      |+|||||+|++|+|.|.++++|++|+++|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            67888888888888888888888888874

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.3e-09  Score=69.24  Aligned_cols=35  Identities=31%  Similarity=0.589  Sum_probs=33.7

Q ss_pred             cCccccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           70 LSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        70 ~~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      .|+++|++++||+|.+|||.|...++|..|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            57899999999999999999999999999999998

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.6e-08  Score=65.15  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=29.9

Q ss_pred             ccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           74 TLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        74 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +|++++||+|.+|||.|.....|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            5899999999999999999999999999997

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=2.3e-08  Score=66.32  Aligned_cols=34  Identities=32%  Similarity=0.679  Sum_probs=32.4

Q ss_pred             CccccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           71 SPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        71 ~~~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |.++|++++||+|.+|++.|....+|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5789999999999999999999999999999995

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=6.2e-09  Score=72.83  Aligned_cols=40  Identities=20%  Similarity=0.413  Sum_probs=33.9

Q ss_pred             hhhhhhhhhccccccccccc--cccccCChhHhhhhhcc-cCCc
Q 011807          143 TGIKKHFCRKHGERKWKCEK--CSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       143 ~~L~~H~r~Htgekpf~C~~--C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      ..|..|++ |++||||+|.+  |+|.|...++|+.|+++ +|||
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45677775 99999999987  99999999999999999 7775

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.8e-08  Score=65.49  Aligned_cols=32  Identities=25%  Similarity=0.567  Sum_probs=30.9

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++|++++||+|.+|++.|....+|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            58999999999999999999999999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=3.7e-08  Score=64.30  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=29.1

Q ss_pred             cCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           75 LLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        75 ~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +++++||+|.+|+|.|....+|.+|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            689999999999999999999999999997

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.9e-08  Score=66.17  Aligned_cols=35  Identities=29%  Similarity=0.713  Sum_probs=29.3

Q ss_pred             ccCCCCCCCCCCCCCcccCchhhhhhhhhccccccccccc
Q 011807          123 YVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKWKCEK  162 (477)
Q Consensus       123 ~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf~C~~  162 (477)
                      |.|++.+|     ++.|..+..|++|+++|+|||||+|+.
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67777544     899999999999999999999999863

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.45  E-value=2.8e-08  Score=62.17  Aligned_cols=29  Identities=24%  Similarity=0.580  Sum_probs=16.1

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      |||.|++|       ++.|.....|++|+++|+|||
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCC-------CCCCCCchHcccccCcccCCC
Confidence            35555555       555555555555555555553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=2e-08  Score=62.18  Aligned_cols=24  Identities=17%  Similarity=0.588  Sum_probs=11.0

Q ss_pred             ccccccccccccCChhHhhhhhcc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |||+|.+|+|.|.++++|++|+|+
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCC
Confidence            444444444444444444444444

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.39  E-value=5.6e-08  Score=60.75  Aligned_cols=28  Identities=29%  Similarity=0.684  Sum_probs=26.6

Q ss_pred             ccccccccccccCChhHhhhhhcc-cCCc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      |||+|++|+|.|.+.++|++|+++ +|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            699999999999999999999999 7886

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=4.8e-08  Score=61.02  Aligned_cols=29  Identities=21%  Similarity=0.472  Sum_probs=16.5

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      |||.|.+|       ++.|..++.|.+|+++|+|||
T Consensus         1 Kpy~C~~C-------~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPEC-------PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTT-------TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcC-------CCeecchHHhhhhcCccCCcC
Confidence            45555555       555555555555555555553

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.1e-07  Score=62.59  Aligned_cols=32  Identities=16%  Similarity=0.477  Sum_probs=29.2

Q ss_pred             cccCCCCceecCCCCccccChhHHHHHHhhcC
Q 011807           73 KTLLATNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        73 ~~~~~~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++|++++||+|++|++.|....+|..|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            58999999999999999999999999986544

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.1e-07  Score=59.30  Aligned_cols=28  Identities=25%  Similarity=0.567  Sum_probs=26.5

Q ss_pred             ccccccccccccCChhHhhhhhcc-cCCc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      |||.|.+|+|.|.++++|.+|+++ +|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            699999999999999999999999 7875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=8.6e-08  Score=57.95  Aligned_cols=26  Identities=31%  Similarity=0.648  Sum_probs=24.7

Q ss_pred             CceecCCCCccccChhHHHHHHhhcC
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |||+|.+|||.|...+.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999984

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.6e-08  Score=58.21  Aligned_cols=24  Identities=25%  Similarity=0.659  Sum_probs=13.0

Q ss_pred             ccccccccccccCChhHhhhhhcc
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |||+|.+|||.|...+.|.+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccC
Confidence            455555555555555555555554

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.9e-07  Score=61.31  Aligned_cols=34  Identities=29%  Similarity=0.699  Sum_probs=31.2

Q ss_pred             ceecCC--CCccccChhHHHHHHhhcCCCccccccccccccccCcccCCC
Q 011807           80 RFVCEV--CNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYVCPE  127 (477)
Q Consensus        80 ~~~C~~--Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~C~~  127 (477)
                      .|.|+.  |++.|.+..+|++|+++|+              ++|||+|+.
T Consensus         1 tf~C~~~~C~k~F~~~~~L~~H~r~Ht--------------gekpy~C~f   36 (36)
T d2dlka2           1 SFSCPEPACGKSFNFKKHLKEHMKLHS--------------DTRDYICEF   36 (36)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHHHH--------------TSCCCSCCS
T ss_pred             CeECCCCCCCCeeCChhHhccccCeeC--------------CCCCEeCCC
Confidence            378987  9999999999999999998              999999974

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.4e-07  Score=58.36  Aligned_cols=28  Identities=18%  Similarity=0.352  Sum_probs=26.8

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      ||||+|++|       ++.|..+..|..|+|+|+|
T Consensus         1 EKPy~C~~C-------~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRIC-------MRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCC-------cCEecccccccccCCCccC
Confidence            689999999       9999999999999999987

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=6.8e-08  Score=67.40  Aligned_cols=33  Identities=21%  Similarity=0.505  Sum_probs=29.9

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      ++++|.|.+-+|     ++.|.....|..|+++|+|||
T Consensus        15 gekpy~C~~~~C-----~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          15 PDKTFECLFPGC-----TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTC-----CCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCeECCcCCC-----CccccCchHHHhhcccccCCC
Confidence            999999988333     999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.7e-07  Score=57.31  Aligned_cols=31  Identities=16%  Similarity=0.514  Sum_probs=21.3

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      |||.|++-+|     ++.|.....|++|+++|+|||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            4677765444     777777777777777777765

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7.7e-07  Score=55.76  Aligned_cols=30  Identities=27%  Similarity=0.544  Sum_probs=20.6

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      |||+|++-+|     ++.|.....|++|+|+|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            4677776433     77777777777777777765

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.4e-07  Score=56.21  Aligned_cols=30  Identities=17%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      |||+|++-+|     +++|.....|++|+|+|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            4677766444     77777777777777777765

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8.4e-07  Score=55.59  Aligned_cols=27  Identities=30%  Similarity=0.630  Sum_probs=22.5

Q ss_pred             ccccccc--cccccCChhHhhhhhcc-cCC
Q 011807          156 RKWKCEK--CSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       156 kpf~C~~--C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      |||+|++  |+|.|.+.++|++|+|+ +||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6888888  88888888888888888 664

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=1.3e-06  Score=55.61  Aligned_cols=18  Identities=11%  Similarity=0.108  Sum_probs=8.4

Q ss_pred             CCcccCchhhhhhhhhcc
Q 011807          136 SRALGDLTGIKKHFCRKH  153 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Ht  153 (477)
                      ++.|.+...|++|+++|+
T Consensus        12 ~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_          12 DKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCCBSSSHHHHHHHGGGT
T ss_pred             CCeeCCHHHHHHHhhhcc
Confidence            444444444444444444

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.3e-06  Score=55.16  Aligned_cols=28  Identities=25%  Similarity=0.667  Sum_probs=24.0

Q ss_pred             cccccc--ccccccCChhHhhhhhcc-cCCc
Q 011807          156 RKWKCE--KCSKVYAVQSDWKAHSKT-CGTR  183 (477)
Q Consensus       156 kpf~C~--~C~K~F~~~s~L~~H~r~-~gek  183 (477)
                      |||+|+  .|+|.|.+.++|++|+++ +|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            689995  499999999999999999 7775

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=7.9e-07  Score=55.77  Aligned_cols=27  Identities=19%  Similarity=0.649  Sum_probs=19.0

Q ss_pred             ccccccc--cccccCChhHhhhhhcc-cCC
Q 011807          156 RKWKCEK--CSKVYAVQSDWKAHSKT-CGT  182 (477)
Q Consensus       156 kpf~C~~--C~K~F~~~s~L~~H~r~-~ge  182 (477)
                      |||+|++  |+|.|.+.++|++|+|+ +||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5677766  77777777777777777 554

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=2.8e-06  Score=52.70  Aligned_cols=29  Identities=28%  Similarity=0.707  Sum_probs=20.1

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      |||+|++.+|     +|.|.+...|++|+|+|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            4677776555     7777777777777777765

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=7.4e-06  Score=48.79  Aligned_cols=24  Identities=33%  Similarity=0.796  Sum_probs=14.8

Q ss_pred             CcceecC-CCCcccChhHHHHHHHH
Q 011807          182 TREYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       182 ekpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      ||||.|+ ||+.|.++...++|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            4566666 66666666666666554

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=9e-06  Score=51.54  Aligned_cols=29  Identities=24%  Similarity=0.658  Sum_probs=26.1

Q ss_pred             cccccccc--cccccCChhHhhhhhcccCCc
Q 011807          155 ERKWKCEK--CSKVYAVQSDWKAHSKTCGTR  183 (477)
Q Consensus       155 ekpf~C~~--C~K~F~~~s~L~~H~r~~gek  183 (477)
                      ||||.|.+  |+|.|.+.++|++|+++|..+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            78999988  999999999999999996543

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=4.5e-06  Score=51.73  Aligned_cols=24  Identities=21%  Similarity=0.627  Sum_probs=14.0

Q ss_pred             ccccccc--cccccCChhHhhhhhcc
Q 011807          156 RKWKCEK--CSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       156 kpf~C~~--C~K~F~~~s~L~~H~r~  179 (477)
                      |||+|++  |+|.|.+.++|++|+|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~   26 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI   26 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc
Confidence            4556655  66666666666666555

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=6.7e-06  Score=50.44  Aligned_cols=26  Identities=38%  Similarity=0.749  Sum_probs=24.4

Q ss_pred             CceecCC--CCccccChhHHHHHHhhcC
Q 011807           79 NRFVCEV--CNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~~--Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +||.|.+  |+|.|.+..+|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899988  9999999999999999985

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.1e-05  Score=49.42  Aligned_cols=28  Identities=29%  Similarity=0.705  Sum_probs=18.3

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhcc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH  153 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Ht  153 (477)
                      |||.|++-||     +|.|....+|++|+|+|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            4666666544     677777777777776664

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.6e-05  Score=45.85  Aligned_cols=25  Identities=44%  Similarity=0.809  Sum_probs=23.5

Q ss_pred             ceecCCCCccccChhHHHHHHhhcC
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |++|+.|+|.|+++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5789999999999999999999996

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=4e-05  Score=45.57  Aligned_cols=27  Identities=26%  Similarity=0.687  Sum_probs=25.3

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcC
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++||.|.+||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999984

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6e-05  Score=49.09  Aligned_cols=32  Identities=34%  Similarity=0.728  Sum_probs=28.6

Q ss_pred             cCCcceecC-CCCcccChhHHHHHHHHhhhhhc
Q 011807          180 CGTREYRCD-CGTLFSRKDSFITHRAFCDALAE  211 (477)
Q Consensus       180 ~gekpy~C~-Cgk~F~~~~~L~~H~~~C~k~f~  211 (477)
                      +|-|||.|. |+|+|..++++.+|+..|.+.+.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C~k~~~   33 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSCTKSYE   33 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhhhhhcc
Confidence            477999999 99999999999999999988754

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.9e-05  Score=45.95  Aligned_cols=32  Identities=31%  Similarity=0.654  Sum_probs=29.0

Q ss_pred             CceecCCCCccccChhHHHHHHhhcCCCccccccccccccccCccc
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIKKKAYV  124 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~~p~~c~~~~~~~~~~~k~~~  124 (477)
                      +...|++|||.|.....|.+|...|+              ++|||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs--------------~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHS--------------GEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSC--------------SCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccC--------------CCCCCC
Confidence            45789999999999999999999998              899873

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=4.2e-05  Score=47.21  Aligned_cols=31  Identities=19%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccccccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGERKW  158 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgekpf  158 (477)
                      |...|+.|       ||.|.....|.+|...|++||||
T Consensus         4 k~~~ce~c-------gk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTT-------TEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCC
Confidence            45678887       88888888888888888888887

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=5.5e-05  Score=43.53  Aligned_cols=22  Identities=32%  Similarity=0.720  Sum_probs=11.8

Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ++|++|+|.|.++..|+.|+|.
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            4555555555555555555554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00011  Score=44.34  Aligned_cols=27  Identities=30%  Similarity=0.769  Sum_probs=25.6

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcC
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ++||.|++|+..|+++..+..|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            579999999999999999999999996

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00044  Score=40.48  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=23.5

Q ss_pred             ceecCCCCccccChhHHHHHHhhcC
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      .+.|.+|||.|...+.|++|..+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4789999999999999999999997

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0003  Score=41.63  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=23.6

Q ss_pred             ccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          123 YVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       123 ~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      |.|++|       +......+-|+.|+|.|++|+
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            788888       888888999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0004  Score=40.90  Aligned_cols=27  Identities=15%  Similarity=0.299  Sum_probs=14.9

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHG  154 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htg  154 (477)
                      +||+|..|       ...-...+.|..|+|.|+|
T Consensus         2 rpfkcqlc-------sy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQIC-------PYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSS-------SCEESSHHHHHHHHTTCCS
T ss_pred             Ccceeeec-------ccccCCchheEEeeecccC
Confidence            45555555       4555555555555555554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00046  Score=41.47  Aligned_cols=28  Identities=36%  Similarity=0.776  Sum_probs=15.5

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhcc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH  153 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Ht  153 (477)
                      |||.|.+.||     +|++...+.|+.|++.++
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhC
Confidence            3555555555     555555555555555443

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00066  Score=40.76  Aligned_cols=23  Identities=22%  Similarity=0.548  Sum_probs=20.2

Q ss_pred             cceecC---CCCcccChhHHHHHHHH
Q 011807          183 REYRCD---CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       183 kpy~C~---Cgk~F~~~~~L~~H~~~  205 (477)
                      |||.|.   |+|+|...++|++|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            689996   99999999999999874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.00067  Score=39.12  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=20.3

Q ss_pred             cCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          124 VCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       124 ~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      +|+.|       .+.|.++..|+.|-|.|+|||
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            57777       788888888888888888775

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00058  Score=41.06  Aligned_cols=25  Identities=16%  Similarity=0.501  Sum_probs=13.7

Q ss_pred             cccccccccccccCChhHhhhhhcc
Q 011807          155 ERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       155 ekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ||||.|++|...|.++..+..|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs   25 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS   25 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeec
Confidence            3555555555555555555555554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00099  Score=38.96  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=11.7

Q ss_pred             CCcccCchhhhhhhhhcccc
Q 011807          136 SRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Htge  155 (477)
                      ||.|...+.|++|..+|+||
T Consensus         9 gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           9 GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CCEESSHHHHHHHGGGTSCC
T ss_pred             hHHHHHHHHHHHHhhcccCC
Confidence            55665555666665555554

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00094  Score=39.26  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=20.4

Q ss_pred             cccccccccccccCChhHhhhhhcc
Q 011807          155 ERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       155 ekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |+||+|..|...-...+.|..|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~   25 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS   25 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT
T ss_pred             CCcceeeecccccCCchheEEeeec
Confidence            5788888888888888888888887

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0009  Score=39.75  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=17.0

Q ss_pred             ccccccccccccCChhHhhhhhcc-cC
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CG  181 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~g  181 (477)
                      |||.|..|.......++|+.|+++ |+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            466666666666666666666666 43

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0015  Score=38.04  Aligned_cols=24  Identities=21%  Similarity=0.510  Sum_probs=19.6

Q ss_pred             cceecC-CCCcccChhHHHHHHHHh
Q 011807          183 REYRCD-CGTLFSRKDSFITHRAFC  206 (477)
Q Consensus       183 kpy~C~-Cgk~F~~~~~L~~H~~~C  206 (477)
                      |||+|. |+..-...++|++|++++
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            688888 888888888888888763

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0016  Score=37.47  Aligned_cols=23  Identities=35%  Similarity=0.728  Sum_probs=22.2

Q ss_pred             ecCCCCccccChhHHHHHHhhcC
Q 011807           82 VCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        82 ~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +|+.|.|.|.++..|+.|-|.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            69999999999999999999998

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.10  E-value=0.0017  Score=38.26  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=19.8

Q ss_pred             cceecC---CCCcccChhHHHHHHHH
Q 011807          183 REYRCD---CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       183 kpy~C~---Cgk~F~~~~~L~~H~~~  205 (477)
                      .||+|.   |+++|+..+.|++|.++
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            489995   99999999999998876

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.001  Score=43.22  Aligned_cols=27  Identities=19%  Similarity=0.613  Sum_probs=23.1

Q ss_pred             cccccccccccccccCChhHhhhhhcc
Q 011807          153 HGERKWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       153 tgekpf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      +|-|||.|.+|+|.|..+..+.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            467899999999999999999988643

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.79  E-value=0.0036  Score=40.16  Aligned_cols=27  Identities=26%  Similarity=0.592  Sum_probs=25.1

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcC
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      .+.|+|.+|++.|.+...|--|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            357999999999999999999999997

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0014  Score=38.85  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=16.0

Q ss_pred             ccccccccccccCChhHhhhhhcc-cC
Q 011807          156 RKWKCEKCSKVYAVQSDWKAHSKT-CG  181 (477)
Q Consensus       156 kpf~C~~C~K~F~~~s~L~~H~r~-~g  181 (477)
                      +||+|.+|...-.+.++|..|++. |+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            456666666666666666666665 54

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0042  Score=36.62  Aligned_cols=25  Identities=28%  Similarity=0.656  Sum_probs=23.7

Q ss_pred             ceecCCCCccccChhHHHHHHhhcC
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      .|.|++||......+.|+.|+|.|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            4899999999999999999999998

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.68  E-value=0.0036  Score=35.47  Aligned_cols=24  Identities=29%  Similarity=0.769  Sum_probs=22.6

Q ss_pred             eecCCCCccccChhHHHHHHhhcC
Q 011807           81 FVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        81 ~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      |+|..|.+.|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999984

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.67  E-value=0.0023  Score=37.85  Aligned_cols=30  Identities=27%  Similarity=0.638  Sum_probs=25.9

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      +||.|.+-||     .|.|.....|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            5788887777     89999999999999999886

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0021  Score=37.99  Aligned_cols=23  Identities=17%  Similarity=0.560  Sum_probs=13.9

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      ||.|..|...|.++.+|.+|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45566666666666666666654

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0042  Score=36.59  Aligned_cols=27  Identities=37%  Similarity=0.796  Sum_probs=25.1

Q ss_pred             CCceecCCCCccccChhHHHHHHhhcC
Q 011807           78 TNRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        78 ~k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +..|.|..|...|+++..|..||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            457999999999999999999999997

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.37  E-value=0.0028  Score=38.36  Aligned_cols=25  Identities=12%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             cccccccccccCChhHhhhhhcc-cC
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT-CG  181 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~-~g  181 (477)
                      ||.|.+|++.|.++.-|.+|+.. |+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            57777777777777777777666 54

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0047  Score=36.61  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=21.6

Q ss_pred             cceecC-CCCcccChhHHHHHHHH
Q 011807          183 REYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       183 kpy~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      |||.|. |..+....++|+.|++.
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            699999 99999999999999985

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0059  Score=36.00  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=20.2

Q ss_pred             ceecC-CCCcccChhHHHHHHHH
Q 011807          184 EYRCD-CGTLFSRKDSFITHRAF  205 (477)
Q Consensus       184 py~C~-Cgk~F~~~~~L~~H~~~  205 (477)
                      ||.|. |...|.++.+|.+|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999 99999999999999863

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0052  Score=38.33  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=25.2

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      |.|.|..-+|...  ++.|..+..|..|+|.|+||
T Consensus         1 k~y~C~W~~C~R~--~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           1 KEFVCHWGGCSRE--LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             SCCCCCBTTCTTT--TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCeEEECCCCCCC--CCcchhHHHHHHHHhhcCCC
Confidence            3567766556432  57799999999999999987

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0079  Score=38.33  Aligned_cols=27  Identities=22%  Similarity=0.671  Sum_probs=22.5

Q ss_pred             CCcceecC---CCCcccChhHHHHHHHHhh
Q 011807          181 GTREYRCD---CGTLFSRKDSFITHRAFCD  207 (477)
Q Consensus       181 gekpy~C~---Cgk~F~~~~~L~~H~~~C~  207 (477)
                      .+|||.|.   |+.+|.+...|..|++.++
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47999994   9999999999998887644

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0084  Score=34.82  Aligned_cols=26  Identities=23%  Similarity=0.519  Sum_probs=24.5

Q ss_pred             CceecCCCCccccChhHHHHHHhhcC
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999999999999999995

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0063  Score=36.74  Aligned_cols=28  Identities=29%  Similarity=0.593  Sum_probs=14.7

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhh-hhcc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHF-CRKH  153 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~-r~Ht  153 (477)
                      |||.|++-||     .|.|...+.-..|+ |+|.
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhcccccc
Confidence            3555555444     55555555555554 4444

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.79  E-value=0.0061  Score=35.87  Aligned_cols=29  Identities=14%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      +..|.|..|       ...|.++-.|..|+-.|+||
T Consensus         2 eqvftcs~c-------qe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVC-------QETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSS-------CCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHH-------HHHHHHHHhheeeeecccCC
Confidence            356778887       78888888888888888775

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.0081  Score=38.29  Aligned_cols=30  Identities=17%  Similarity=0.540  Sum_probs=24.9

Q ss_pred             ccCcccCCCCCCCCCCCCCcccCchhhhhhhhhcc
Q 011807          119 KKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKH  153 (477)
Q Consensus       119 ~~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Ht  153 (477)
                      .+|||.|...||     +.+|.+...|..|.+.|.
T Consensus         3 ddkPF~C~~pGC-----~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCc-----cccccchHHHHHhhhhhe
Confidence            578899988777     888988888888888774

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.36  E-value=0.0094  Score=35.15  Aligned_cols=26  Identities=35%  Similarity=0.694  Sum_probs=23.7

Q ss_pred             CceecCC--CCccccChhHHHHHHhhcC
Q 011807           79 NRFVCEV--CNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~~--Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +||.|.+  |.|.|.+...|.+|..+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            5899976  9999999999999999986

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.23  E-value=0.01  Score=34.39  Aligned_cols=22  Identities=27%  Similarity=0.665  Sum_probs=14.1

Q ss_pred             cccccccccccCChhHhhhhhc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSK  178 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r  178 (477)
                      ||+|..|||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4666666666666666666643

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.017  Score=34.03  Aligned_cols=25  Identities=16%  Similarity=0.429  Sum_probs=22.4

Q ss_pred             cceecC-CCCcccChhHHHHHHHHhh
Q 011807          183 REYRCD-CGTLFSRKDSFITHRAFCD  207 (477)
Q Consensus       183 kpy~C~-Cgk~F~~~~~L~~H~~~C~  207 (477)
                      +||+|. |..--.+.++|.+|++.+.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            699999 9999999999999998643

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.06  E-value=0.011  Score=34.68  Aligned_cols=26  Identities=23%  Similarity=0.551  Sum_probs=16.5

Q ss_pred             cccCCCCCCCCCCCCCcccCchhhhhhhhhc
Q 011807          122 AYVCPEPSCVHHHPSRALGDLTGIKKHFCRK  152 (477)
Q Consensus       122 ~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~H  152 (477)
                      ||+|+.-||     ++.|...+.|++|.++|
T Consensus         3 py~c~hegc-----dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGC-----DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTC-----CCEESSHHHHHHHHHHH
T ss_pred             CccCCccCc-----cccccCHHHHhhhhhcc
Confidence            566665555     66666666666666655

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.69  E-value=0.016  Score=34.93  Aligned_cols=21  Identities=38%  Similarity=0.920  Sum_probs=19.2

Q ss_pred             ceecC-CCCcccChhHHHHHHH
Q 011807          184 EYRCD-CGTLFSRKDSFITHRA  204 (477)
Q Consensus       184 py~C~-Cgk~F~~~~~L~~H~~  204 (477)
                      ||.|. |++.|++++-|.+|..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            79999 9999999999998875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=93.67  E-value=0.019  Score=32.41  Aligned_cols=22  Identities=23%  Similarity=0.662  Sum_probs=11.9

Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |+|..|.+.|..++.|.+|+|.
T Consensus         1 ykcglcersfveksalsrhqrv   22 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV   22 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHHh
Confidence            4455555555555555555554

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.61  E-value=0.016  Score=37.06  Aligned_cols=30  Identities=17%  Similarity=0.373  Sum_probs=22.4

Q ss_pred             cCcccCCCCCCCCCCCCCcccCchhhhhhhhhccccc
Q 011807          120 KKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGER  156 (477)
Q Consensus       120 ~k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htgek  156 (477)
                      .+.|+|.+|       ++.|.+-..|--|++.|..++
T Consensus         3 ~r~~~C~~C-------~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFC-------KREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTT-------CCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCC-------CCccCCcccccchHhhhcchH
Confidence            356788887       788888888888887776554

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.57  E-value=0.02  Score=32.28  Aligned_cols=21  Identities=29%  Similarity=0.773  Sum_probs=16.6

Q ss_pred             ceecC-CCCcccChhHHHHHHH
Q 011807          184 EYRCD-CGTLFSRKDSFITHRA  204 (477)
Q Consensus       184 py~C~-Cgk~F~~~~~L~~H~~  204 (477)
                      ||+|. |...|..+..|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            68888 8888888888887763

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.53  E-value=0.023  Score=32.82  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=21.4

Q ss_pred             ceecCCCCccccChhHHHHHHhhc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGH  103 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H  103 (477)
                      ||+|..|||.|-++.+|..|....
T Consensus         1 pf~c~kcgkcyfrkenllehearn   24 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEARN   24 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHC
T ss_pred             CCccccchhhhhhHhHHHHHHHHh
Confidence            689999999999999999997643

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.02  Score=35.29  Aligned_cols=24  Identities=29%  Similarity=0.908  Sum_probs=18.3

Q ss_pred             ceecC-CCCcccChhHHHHHHHHhh
Q 011807          184 EYRCD-CGTLFSRKDSFITHRAFCD  207 (477)
Q Consensus       184 py~C~-Cgk~F~~~~~L~~H~~~C~  207 (477)
                      .|+|. |+|.|.++..+.+|-..|-
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            47888 8888888888888876653

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.016  Score=34.91  Aligned_cols=21  Identities=29%  Similarity=0.746  Sum_probs=18.4

Q ss_pred             cceecC---CCCcccChhHHHHHH
Q 011807          183 REYRCD---CGTLFSRKDSFITHR  203 (477)
Q Consensus       183 kpy~C~---Cgk~F~~~~~L~~H~  203 (477)
                      |||.|+   |.|.|+..+.-.+|+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            689996   999999999888886

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.02  E-value=0.048  Score=30.68  Aligned_cols=22  Identities=27%  Similarity=0.671  Sum_probs=20.7

Q ss_pred             ceecCCCCccccChhHHHHHHh
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRR  101 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r  101 (477)
                      +|+|..|...|-.+..|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999974

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.72  E-value=0.027  Score=31.90  Aligned_cols=22  Identities=27%  Similarity=0.579  Sum_probs=13.1

Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |.|++|-|.|+++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4566666666666666666554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.09  E-value=0.066  Score=30.23  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=21.5

Q ss_pred             ceecCCCCccccChhHHHHHHhhc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGH  103 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H  103 (477)
                      .|.|+.|-|.|.++.++..|.++-
T Consensus         1 vypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEEe
Confidence            389999999999999999998753

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.037  Score=34.07  Aligned_cols=23  Identities=22%  Similarity=0.634  Sum_probs=20.6

Q ss_pred             cccccccccccCChhHhhhhhcc
Q 011807          157 KWKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       157 pf~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      .|.|..|+|.|+++..+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            48999999999999999999765

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.075  Score=35.41  Aligned_cols=26  Identities=27%  Similarity=0.577  Sum_probs=24.0

Q ss_pred             CceecCCCCccccChhHHHHHHhhcC
Q 011807           79 NRFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        79 k~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      ..|.|..|+|.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            46899999999999999999999985

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.07  E-value=0.046  Score=32.66  Aligned_cols=30  Identities=27%  Similarity=0.606  Sum_probs=25.6

Q ss_pred             CcccCCCCCCCCCCCCCcccCchhhhhhhhhcccc
Q 011807          121 KAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGE  155 (477)
Q Consensus       121 k~~~C~~C~C~~~~~~k~F~~~~~L~~H~r~Htge  155 (477)
                      |.|.|...+|     +..|.....|..|+..|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            5678877666     89999999999999999986

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.17  Score=29.24  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=23.0

Q ss_pred             ceecCCCCccccChhHHHHHHhhcC
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGHN  104 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H~  104 (477)
                      +-+|.+|.....++..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4689999999999999999999995

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.97  E-value=0.085  Score=30.47  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=14.3

Q ss_pred             ccccccccccCChhHhhhhhcc
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKT  179 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~  179 (477)
                      |+|+.|+-...++++|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            5666666666666666666654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.60  E-value=0.095  Score=34.88  Aligned_cols=24  Identities=25%  Similarity=0.583  Sum_probs=16.9

Q ss_pred             ccccccccccCChhHhhhhhcccC
Q 011807          158 WKCEKCSKVYAVQSDWKAHSKTCG  181 (477)
Q Consensus       158 f~C~~C~K~F~~~s~L~~H~r~~g  181 (477)
                      |.|-.|+|.|+....|+.|...||
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeccccccccCCHHHHhHhHHhcC
Confidence            667777777777777777766544

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=0.27  Score=28.32  Aligned_cols=24  Identities=29%  Similarity=0.681  Sum_probs=21.6

Q ss_pred             ceecCCCCccccChhHHHHHHhhc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGH  103 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H  103 (477)
                      .|.|+.|+....+++.|..|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            489999999999999999998753

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=0.22  Score=28.78  Aligned_cols=18  Identities=11%  Similarity=0.004  Sum_probs=11.2

Q ss_pred             CCcccCchhhhhhhhhcc
Q 011807          136 SRALGDLTGIKKHFCRKH  153 (477)
Q Consensus       136 ~k~F~~~~~L~~H~r~Ht  153 (477)
                      ..+...+..|+.|.|+|.
T Consensus         9 syscsskaalrvh~rihc   26 (28)
T d1x5wa1           9 SYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SCEESSHHHHHHHHGGGC
T ss_pred             ccccCcHHHHHHhhcccc
Confidence            566666666666666653

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.05  E-value=0.36  Score=27.57  Aligned_cols=20  Identities=30%  Similarity=0.876  Sum_probs=15.9

Q ss_pred             eecC---CCCcccChhHHHHHHH
Q 011807          185 YRCD---CGTLFSRKDSFITHRA  204 (477)
Q Consensus       185 y~C~---Cgk~F~~~~~L~~H~~  204 (477)
                      |+|.   |+|.|.....|+.|+-
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf   24 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQF   24 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEee
Confidence            7784   8888888888887764

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.67  E-value=0.44  Score=27.81  Aligned_cols=24  Identities=21%  Similarity=0.516  Sum_probs=21.3

Q ss_pred             ceecCCCCccccChhHHHHHHhhc
Q 011807           80 RFVCEVCNKGFQRDQNLQLHRRGH  103 (477)
Q Consensus        80 ~~~C~~Cgk~F~~~~~L~~H~r~H  103 (477)
                      .|.|..|||..++...++.|+...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEeec
Confidence            489999999999999999997653

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=82.59  E-value=0.37  Score=28.12  Aligned_cols=22  Identities=27%  Similarity=0.712  Sum_probs=18.0

Q ss_pred             cceecC---CCCcccChhHHHHHHH
Q 011807          183 REYRCD---CGTLFSRKDSFITHRA  204 (477)
Q Consensus       183 kpy~C~---Cgk~F~~~~~L~~H~~  204 (477)
                      |.|.|+   |+-+|.++.++++|-.
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHH
T ss_pred             CCccccCCCcceEEeehHHHHHHHh
Confidence            458896   9999999999888864

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.75  E-value=0.45  Score=27.51  Aligned_cols=19  Identities=16%  Similarity=0.338  Sum_probs=13.4

Q ss_pred             CCCCcccCchhhhhhhhhc
Q 011807          134 HPSRALGDLTGIKKHFCRK  152 (477)
Q Consensus       134 ~~~k~F~~~~~L~~H~r~H  152 (477)
                      .|.|.|.+.+.++.|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3477777777777777666