Your job contains 1 sequence.
>011810
MRTLAIANMEVGSVWMRLVRVRGGAPSVFLMKPSAVSSSSKTTRTIRYKNHLSTFFPSSN
PPPITFLSPVSPTRRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMS
FTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSL
KDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK
RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS
PRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE
LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK
MIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAINASI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011810
(477 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195608 - symbol:AT1G60230 species:3702 "Arabi... 1563 1.7e-160 1
UNIPROTKB|Q74E53 - symbol:rlmN "Dual-specificity RNA meth... 716 9.9e-71 1
TIGR_CMR|GSU_1111 - symbol:GSU_1111 "conserved hypothetic... 716 9.9e-71 1
UNIPROTKB|Q83C77 - symbol:rlmN "Dual-specificity RNA meth... 645 3.3e-63 1
TIGR_CMR|CBU_1252 - symbol:CBU_1252 "radical SAM enzyme, ... 645 3.3e-63 1
TIGR_CMR|SPO_3346 - symbol:SPO_3346 "radical SAM enzyme, ... 604 7.3e-59 1
UNIPROTKB|P36979 - symbol:rlmN "23S rRNA m2A2503 methyltr... 583 1.2e-56 1
UNIPROTKB|Q8EC29 - symbol:rlmN "Dual-specificity RNA meth... 583 1.2e-56 1
TIGR_CMR|SO_3315 - symbol:SO_3315 "conserved hypothetical... 583 1.2e-56 1
UNIPROTKB|Q9KTX3 - symbol:rlmN "Dual-specificity RNA meth... 582 1.6e-56 1
TIGR_CMR|VC_0757 - symbol:VC_0757 "conserved hypothetical... 582 1.6e-56 1
TIGR_CMR|CJE_1882 - symbol:CJE_1882 "radical SAM enzyme, ... 581 2.0e-56 1
UNIPROTKB|Q603C0 - symbol:rlmN "Dual-specificity RNA meth... 572 1.8e-55 1
UNIPROTKB|Q47WB7 - symbol:rlmN "Dual-specificity RNA meth... 568 4.8e-55 1
TIGR_CMR|CPS_4255 - symbol:CPS_4255 "radical SAM enzyme, ... 568 4.8e-55 1
UNIPROTKB|Q81WH4 - symbol:rlmN "Probable dual-specificity... 541 3.5e-52 1
TIGR_CMR|BA_4002 - symbol:BA_4002 "conserved hypothetical... 541 3.5e-52 1
DICTYBASE|DDB_G0288255 - symbol:DDB_G0288255 "putative ri... 537 9.2e-52 1
UNIPROTKB|Q723G9 - symbol:rlmN "Probable dual-specificity... 511 5.2e-49 1
TAIR|locus:2091161 - symbol:AT3G19630 species:3702 "Arabi... 482 6.2e-46 1
TAIR|locus:2043225 - symbol:AT2G39670 species:3702 "Arabi... 455 4.5e-43 1
UNIPROTKB|Q3AC22 - symbol:rlmN "Probable dual-specificity... 448 2.5e-42 1
TIGR_CMR|CHY_1480 - symbol:CHY_1480 "radical SAM enzyme, ... 448 2.5e-42 1
UNIPROTKB|O83107 - symbol:rlmN "Probable dual-specificity... 409 3.4e-38 1
UNIPROTKB|P0A644 - symbol:rlmN "Probable dual-specificity... 396 8.0e-37 1
GENEDB_PFALCIPARUM|PF14_0066 - symbol:PF14_0066 "radical ... 328 1.3e-29 1
UNIPROTKB|Q8IM25 - symbol:PF14_0066 "Radical SAM protein,... 328 1.3e-29 1
>TAIR|locus:2195608 [details] [associations]
symbol:AT1G60230 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 SMART:SM00729 EMBL:CP002684
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0051536 GO:GO:0006364
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
OMA:IYHFGVS UniGene:At.43275 UniGene:At.64986 EMBL:AY054695
EMBL:AY081476 IPI:IPI00549143 RefSeq:NP_564755.1
ProteinModelPortal:Q93XX3 SMR:Q93XX3 EnsemblPlants:AT1G60230.1
GeneID:842318 KEGG:ath:AT1G60230 TAIR:At1g60230 InParanoid:Q93XX3
PhylomeDB:Q93XX3 ProtClustDB:CLSN2688935 ArrayExpress:Q93XX3
Genevestigator:Q93XX3 Uniprot:Q93XX3
Length = 458
Score = 1563 (555.3 bits), Expect = 1.7e-160, P = 1.7e-160
Identities = 314/465 (67%), Positives = 371/465 (79%)
Query: 13 SVWMRLVRVRGGAPSVFLMKPSAVSSSSKTTRTIRYKNHLSTFFPSSNPPPITFLSPVSP 72
S MR + + S ++ PS +SS++ T+ + L + +++ I F S
Sbjct: 2 STTMRRLGIITLTNSAAVVTPSLLSSTAAFPGTLTLPSPLLSDRLTNS---ILFHESRSL 58
Query: 73 TRRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHA 132
+ S+++ S L ++E+Y S G +V +V+LKGM++ LQ+WV+SH
Sbjct: 59 SFSCFSSSSSSSAAYLPSLEEYPSAKG-----SVKRDDNQKVVLKGMTYASLQEWVQSHG 113
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FRPGQALMLWKRLY D+IWA+ DELEGLNKD K+M+SEHAEF ALS KDI ++SDGTRK
Sbjct: 114 FRPGQALMLWKRLYKDNIWANNVDELEGLNKDLKRMISEHAEFGALSFKDIRSASDGTRK 173
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
ILF LDDGLVIETVVIPC+RGRTTVCVSSQVGCAMNCQFCYTGRMGLKR+LT AEIVEQA
Sbjct: 174 ILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQA 233
Query: 253 VFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
V+ARRLLS EVGSITNVVFMGMGEP HN++NVIKAANIMV E GLHFSPRKVTVSTSGLV
Sbjct: 234 VYARRLLSHEVGSITNVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLV 293
Query: 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372
PQLK+FL ESNCALAVSLNATTDEVRNWIMPINRKYKL LL+ETLRE L ++ YKVLFE
Sbjct: 294 PQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFE 353
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
YVMLAGVNDS DDA+RL+ LVQGIPCKINLI FNPH GSQF T ++KMI+FRN+LA G
Sbjct: 354 YVMLAGVNDSMDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGG 413
Query: 433 CTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAINASI 477
CTV +R SRG+DQMAACGQLG GA+QAP++RVPE+F+TA+ AS+
Sbjct: 414 CTVLMRFSRGNDQMAACGQLGMIGAVQAPVMRVPEQFRTALKASV 458
>UNIPROTKB|Q74E53 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 160/339 (47%), Positives = 211/339 (62%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHA 173
+KG+S EL++++ +A ++K LY G +A TD L K+ ++ L E A
Sbjct: 7 IKGLSIDELERFLLGKGKERYRARQIFKWLYQRGATSFAEMTD----LAKELRRDLEETA 62
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
LS + + S DGTRK LF LDDG +E+V+IP R T+C+SSQVGCAM C+FC
Sbjct: 63 RISTLSPEALEISRDGTRKYLFRLDDGCSVESVLIP-EEDRNTLCISSQVGCAMACEFCL 121
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
TG L R+LT AEIV Q +R +V + N+VFMGMGEPL N++NVI+A IM+H
Sbjct: 122 TGTFRLTRNLTTAEIVNQVCAVQR----DV-PVRNIVFMGMGEPLANLDNVIRALQIMLH 176
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353
+ GL FS R++TVST+GLVP++++ LAVSLNATTDE+R+ IMPINRKY L +L
Sbjct: 177 DDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVL 236
Query: 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 413
++ R K+ EYV+L GVND+ DDAKRL+ L+ IP KINLI FN H G F
Sbjct: 237 LDACRR-FPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPFNEHEGCSF 295
Query: 414 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ + + F L TV R SRG D AACGQL
Sbjct: 296 RSPSQDAIDRFHRYLLDKHFTVITRSSRGADISAACGQL 334
>TIGR_CMR|GSU_1111 [details] [associations]
symbol:GSU_1111 "conserved hypothetical protein TIGR00048"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 160/339 (47%), Positives = 211/339 (62%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHA 173
+KG+S EL++++ +A ++K LY G +A TD L K+ ++ L E A
Sbjct: 7 IKGLSIDELERFLLGKGKERYRARQIFKWLYQRGATSFAEMTD----LAKELRRDLEETA 62
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
LS + + S DGTRK LF LDDG +E+V+IP R T+C+SSQVGCAM C+FC
Sbjct: 63 RISTLSPEALEISRDGTRKYLFRLDDGCSVESVLIP-EEDRNTLCISSQVGCAMACEFCL 121
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
TG L R+LT AEIV Q +R +V + N+VFMGMGEPL N++NVI+A IM+H
Sbjct: 122 TGTFRLTRNLTTAEIVNQVCAVQR----DV-PVRNIVFMGMGEPLANLDNVIRALQIMLH 176
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353
+ GL FS R++TVST+GLVP++++ LAVSLNATTDE+R+ IMPINRKY L +L
Sbjct: 177 DDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVL 236
Query: 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 413
++ R K+ EYV+L GVND+ DDAKRL+ L+ IP KINLI FN H G F
Sbjct: 237 LDACRR-FPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPFNEHEGCSF 295
Query: 414 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ + + F L TV R SRG D AACGQL
Sbjct: 296 RSPSQDAIDRFHRYLLDKHFTVITRSSRGADISAACGQL 334
>UNIPROTKB|Q83C77 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 152/343 (44%), Positives = 206/343 (60%)
Query: 113 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L +S ELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSEPELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 289
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 290 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
L LI R+ + V FEYVM+ G+ND DAK+LI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLADVPCKINLIPFNSFQ 296
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQL 339
>TIGR_CMR|CBU_1252 [details] [associations]
symbol:CBU_1252 "radical SAM enzyme, Cfr family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
Identities = 152/343 (44%), Positives = 206/343 (60%)
Query: 113 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L +S ELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSEPELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 289
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 290 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
L LI R+ + V FEYVM+ G+ND DAK+LI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLADVPCKINLIPFNSFQ 296
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQL 339
>TIGR_CMR|SPO_3346 [details] [associations]
symbol:SPO_3346 "radical SAM enzyme, Cfr family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_168542.1 ProteinModelPortal:Q5LN66 GeneID:3195026
KEGG:sil:SPO3346 PATRIC:23380143 ProtClustDB:CLSK934133
Uniprot:Q5LN66
Length = 393
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 142/368 (38%), Positives = 211/368 (57%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 155
++ +P+K R+ L G++ +++ + H QA M +W+ +Y W
Sbjct: 10 DVVTIPRKLPEGRINLVGLTRDRMREVLIDHGTPEKQAKMRVGQIWQWIYQ---WGVRDF 66
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
+ + L K ++ L+EH + L S DGTRK L + G +E V IP R
Sbjct: 67 EAMTNLAKAYRAQLAEHFTIEIPEVITRLVSEDGTRKYLVRIAGGHEVEVVYIP-EEDRG 125
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSI 266
T+C+SSQVGC + C FC+TG L R+LTAAEIV Q + AR L E +
Sbjct: 126 TLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVPGAPKDETRLL 185
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
+N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C L
Sbjct: 186 SNIVLMGMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCLL 245
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
A+S +ATTDEVR+ ++PIN+++ + L+ L N+ ++ FEYVML GVNDS DA
Sbjct: 246 AISFHATTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADA 305
Query: 387 KRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444
RL+ ++ IP KINLI FN G+ + +++ ++ F NI+ AG +R +RGDD
Sbjct: 306 HRLLDHIRRYKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYAAPIRKTRGDD 365
Query: 445 QMAACGQL 452
MAACGQL
Sbjct: 366 IMAACGQL 373
>UNIPROTKB|P36979 [details] [associations]
symbol:rlmN "23S rRNA m2A2503 methyltransferase and tRNA
m2A37 methyltransferase" species:83333 "Escherichia coli K-12"
[GO:0000049 "tRNA binding" evidence=IDA] [GO:0002935 "tRNA
(adenine-C2-)-methyltransferase activity" evidence=IMP;IDA]
[GO:0030488 "tRNA methylation" evidence=IMP;IDA] [GO:0070475 "rRNA
base methylation" evidence=IMP] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070040 "rRNA (adenine-C2-)-methyltransferase activity"
evidence=IEA;IMP;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0046677 GO:GO:0051539
GO:GO:0000049 GO:GO:0070475 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
EMBL:U02965 PIR:D65028 RefSeq:NP_417012.1 RefSeq:YP_490745.1
PDB:3RF9 PDB:3RFA PDBsum:3RF9 PDBsum:3RFA ProteinModelPortal:P36979
SMR:P36979 DIP:DIP-12035N IntAct:P36979 MINT:MINT-1220055
PaxDb:P36979 PRIDE:P36979 EnsemblBacteria:EBESCT00000004286
EnsemblBacteria:EBESCT00000016514 GeneID:12932308 GeneID:946249
KEGG:ecj:Y75_p2470 KEGG:eco:b2517 PATRIC:32120427 EchoBASE:EB2301
EcoGene:EG12401 OMA:IYHFGVS BioCyc:EcoCyc:EG12401-MONOMER
BioCyc:ECOL316407:JW2501-MONOMER BioCyc:MetaCyc:EG12401-MONOMER
Genevestigator:P36979 GO:GO:0002935 Uniprot:P36979
Length = 384
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 143/356 (40%), Positives = 209/356 (58%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLN 162
NV K G ++ L ++ +++++ + +P +A +M W Y D + DE+ +N
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNF----DEMTDIN 64
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP R T+CVSSQ
Sbjct: 65 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIP-EDDRATLCVSSQ 122
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + G ITNVV MGMGEPL
Sbjct: 123 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPL 182
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R
Sbjct: 183 LNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIR 242
Query: 339 NWIMPINRKYKLGLLIETLREELHFKN-NY-KVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + +R L N N +V EYVML VND + A +L L++
Sbjct: 243 DEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDT 302
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 303 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358
>UNIPROTKB|Q8EC29 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 141/342 (41%), Positives = 200/342 (58%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 28 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISGYQKSADGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAIHVGEGQEVETVYIP-EDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + E G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFAKETGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN-NY 367
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N N
Sbjct: 202 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 261
Query: 368 -KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>TIGR_CMR|SO_3315 [details] [associations]
symbol:SO_3315 "conserved hypothetical protein TIGR00048"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 141/342 (41%), Positives = 200/342 (58%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 28 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISGYQKSADGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAIHVGEGQEVETVYIP-EDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + E G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFAKETGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN-NY 367
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N N
Sbjct: 202 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 261
Query: 368 -KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>UNIPROTKB|Q9KTX3 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 144/342 (42%), Positives = 201/342 (58%)
Query: 117 KGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFR 176
KG+ T + + AFR Q +M W +G D + D++ +NK ++ L E R
Sbjct: 14 KGLR-TFFAEELGEKAFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIR 67
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
A + + S+DGT K + D V ETV IP R T+CVSSQVGCA+ C+FC T +
Sbjct: 68 APYVSEAQHSADGTIKWAMRVGDQDV-ETVYIP-EDDRATLCVSSQVGCALECKFCSTAQ 125
Query: 237 MGLKRHLTAAEIVEQAVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMV 292
G R+L +EI+ Q A R L E G ITNVV MGMGEPL N++N+I A IM+
Sbjct: 126 QGFNRNLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIML 185
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
+ G S R+VTVSTSG+V L+Q + + + ALA+SL+A D++R+ IMPIN ++ +
Sbjct: 186 DDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEA 245
Query: 353 LIETLREELHFKN-NY-KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
+E +R + N N KV EYV+L VND + A L L++G PCKINLI FNP+ G
Sbjct: 246 FLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPG 305
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ ++ F+ L TV +R +RGDD AACGQL
Sbjct: 306 SPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>TIGR_CMR|VC_0757 [details] [associations]
symbol:VC_0757 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 144/342 (42%), Positives = 201/342 (58%)
Query: 117 KGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFR 176
KG+ T + + AFR Q +M W +G D + D++ +NK ++ L E R
Sbjct: 14 KGLR-TFFAEELGEKAFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIR 67
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
A + + S+DGT K + D V ETV IP R T+CVSSQVGCA+ C+FC T +
Sbjct: 68 APYVSEAQHSADGTIKWAMRVGDQDV-ETVYIP-EDDRATLCVSSQVGCALECKFCSTAQ 125
Query: 237 MGLKRHLTAAEIVEQAVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMV 292
G R+L +EI+ Q A R L E G ITNVV MGMGEPL N++N+I A IM+
Sbjct: 126 QGFNRNLRVSEIIGQVWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIML 185
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
+ G S R+VTVSTSG+V L+Q + + + ALA+SL+A D++R+ IMPIN ++ +
Sbjct: 186 DDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEA 245
Query: 353 LIETLREELHFKN-NY-KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
+E +R + N N KV EYV+L VND + A L L++G PCKINLI FNP+ G
Sbjct: 246 FLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPG 305
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ ++ F+ L TV +R +RGDD AACGQL
Sbjct: 306 SPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQL 347
>TIGR_CMR|CJE_1882 [details] [associations]
symbol:CJE_1882 "radical SAM enzyme, Cfr family"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_179852.1 ProteinModelPortal:Q5HS83 STRING:Q5HS83
GeneID:3230641 KEGG:cjr:CJE1882 PATRIC:20045594
ProtClustDB:PRK14462 BioCyc:CJEJ195099:GJC0-1921-MONOMER
Uniprot:Q5HS83
Length = 356
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 127/316 (40%), Positives = 190/316 (60%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPC 210
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 211 ------------NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +RE +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRE-FPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH G + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>UNIPROTKB|Q603C0 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 EMBL:AE017282
GenomeReviews:AE017282_GR GO:GO:0001510 eggNOG:COG0820 KO:K06941
OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_115280.1 ProteinModelPortal:Q603C0 GeneID:3104120
KEGG:mca:MCA2887 PATRIC:22609656 Uniprot:Q603C0
Length = 366
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 133/307 (43%), Positives = 179/307 (58%)
Query: 151 WAH---CTDE--LEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H TD + L+K + L +E R L S+DGTRK + +D +ET
Sbjct: 44 WIHQRGVTDFGLMTNLSKTLRSRLEAVSEIRPPELVLEQRSADGTRKWVLQVDAVNRVET 103
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS 265
V+IP + GR T+CVSSQVGC++ C FC T R G R+LT AEI+ Q A+ L E
Sbjct: 104 VLIP-DEGRNTLCVSSQVGCSLECSFCSTARQGFNRNLTTAEIIGQLWVAQHRLDEEQ-R 161
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
I+NVV MGMGEPL N NV+ A +M+ + S R+VT+STSG+VP L + S+ +
Sbjct: 162 ISNVVLMGMGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDIS 221
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LAVSL+A D +RN ++PINRKY + L+ + + +N KV FEYVML GVND +
Sbjct: 222 LAVSLHAPDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEH 281
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A+ L+ L+ +P K+NLI FNP S + + E + F L AG R +RG D
Sbjct: 282 ARALVRLLSHVPSKVNLIPFNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDI 341
Query: 446 MAACGQL 452
AACGQL
Sbjct: 342 DAACGQL 348
>UNIPROTKB|Q47WB7 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 RefSeq:YP_270905.1 ProteinModelPortal:Q47WB7
STRING:Q47WB7 GeneID:3518965 KEGG:cps:CPS_4255 PATRIC:21471375
HOGENOM:HOG000217992 ProtClustDB:PRK11194
BioCyc:CPSY167879:GI48-4265-MONOMER Uniprot:Q47WB7
Length = 386
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 131/345 (37%), Positives = 200/345 (57%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
+V L +++++ S +P +A + K +Y +++ +NK ++ L +
Sbjct: 7 KVNLLNFDHKSMREYLESIGEKPFRADQIMKWIY--HFGYSDFEQMTNINKKLREKLQRN 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A + + S DGT K L+ G +ETV IP N R T+CVSSQVGCA+ C FC
Sbjct: 65 CIISAPDISEKQVSEDGTIKYALKLEGGQEVETVWIPEN-DRATLCVSSQVGCALECTFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAV-FARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAA 288
T + G R+L+ AEI+ Q A + ++ + ITN+V MGMGEPL N++N+I A
Sbjct: 124 ATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGTRPITNIVMMGMGEPLLNMKNLIPAL 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+ M+++ G S R+VTVSTSG+VP L + +CALA+S++A +++R+ ++PIN+KY
Sbjct: 184 DTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHAPNNKLRDELVPINKKY 243
Query: 349 KLGLLIETLREELH-FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L I + K N + EYVML VNDS D A L ++G+P KINLI FNP
Sbjct: 244 PLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAHALKGLPSKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ GS ++ +++ ++ F +L G TV R +RG+D AACGQL
Sbjct: 304 YPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQL 348
>TIGR_CMR|CPS_4255 [details] [associations]
symbol:CPS_4255 "radical SAM enzyme, Cfr family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_270905.1
ProteinModelPortal:Q47WB7 STRING:Q47WB7 GeneID:3518965
KEGG:cps:CPS_4255 PATRIC:21471375 HOGENOM:HOG000217992
ProtClustDB:PRK11194 BioCyc:CPSY167879:GI48-4265-MONOMER
Uniprot:Q47WB7
Length = 386
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 131/345 (37%), Positives = 200/345 (57%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
+V L +++++ S +P +A + K +Y +++ +NK ++ L +
Sbjct: 7 KVNLLNFDHKSMREYLESIGEKPFRADQIMKWIY--HFGYSDFEQMTNINKKLREKLQRN 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A + + S DGT K L+ G +ETV IP N R T+CVSSQVGCA+ C FC
Sbjct: 65 CIISAPDISEKQVSEDGTIKYALKLEGGQEVETVWIPEN-DRATLCVSSQVGCALECTFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAV-FARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAA 288
T + G R+L+ AEI+ Q A + ++ + ITN+V MGMGEPL N++N+I A
Sbjct: 124 ATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGTRPITNIVMMGMGEPLLNMKNLIPAL 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+ M+++ G S R+VTVSTSG+VP L + +CALA+S++A +++R+ ++PIN+KY
Sbjct: 184 DTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHAPNNKLRDELVPINKKY 243
Query: 349 KLGLLIETLREELH-FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L I + K N + EYVML VNDS D A L ++G+P KINLI FNP
Sbjct: 244 PLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAHALKGLPSKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ GS ++ +++ ++ F +L G TV R +RG+D AACGQL
Sbjct: 304 YPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQL 348
>UNIPROTKB|Q81WH4 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 128/352 (36%), Positives = 196/352 (55%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGL 161
N+ KK S + + E+Q W++ FR GQ + W LY + + +++ L
Sbjct: 11 NLETKKPS---IYSLQLHEMQDWLKEQGEPKFRAGQ-IFDW--LYKKRVKNY--EDMSNL 62
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
+K ++ LS + L+ TSSDGT K LF L DG IETV++ G + +CV++
Sbjct: 63 SKGLREKLSNSFDITTLNTLVKQTSSDGTIKFLFQLYDGYSIETVLMRHEYGNS-ICVTT 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV 281
QVGC + C FC + GLKR+L A EIV Q V +R L ++++V MG+GEP N
Sbjct: 122 QVGCRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESEERVSSLVVMGIGEPFDNY 181
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNW 340
+N++ I+ HE+GLH R +TVSTSG++P++ +F E A+SL+A E+R+
Sbjct: 182 DNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISLHAPNSELRSK 241
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
+MPINR YKL L+E ++ ++ + ++ FEY + G ND + A+ L L++G+ C +
Sbjct: 242 LMPINRAYKLPDLMEAIKYYVN-RTGRRITFEYGLFGGENDQVEHAEELAALLKGVKCHV 300
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI N + T E++ F L G V +R +G D AACGQL
Sbjct: 301 NLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACGQL 352
>TIGR_CMR|BA_4002 [details] [associations]
symbol:BA_4002 "conserved hypothetical protein TIGR00048"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 128/352 (36%), Positives = 196/352 (55%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGL 161
N+ KK S + + E+Q W++ FR GQ + W LY + + +++ L
Sbjct: 11 NLETKKPS---IYSLQLHEMQDWLKEQGEPKFRAGQ-IFDW--LYKKRVKNY--EDMSNL 62
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
+K ++ LS + L+ TSSDGT K LF L DG IETV++ G + +CV++
Sbjct: 63 SKGLREKLSNSFDITTLNTLVKQTSSDGTIKFLFQLYDGYSIETVLMRHEYGNS-ICVTT 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV 281
QVGC + C FC + GLKR+L A EIV Q V +R L ++++V MG+GEP N
Sbjct: 122 QVGCRIGCTFCASTLGGLKRNLEAGEIVAQVVEVQRALDESEERVSSLVVMGIGEPFDNY 181
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNW 340
+N++ I+ HE+GLH R +TVSTSG++P++ +F E A+SL+A E+R+
Sbjct: 182 DNLMGFLRIINHEKGLHIGARHMTVSTSGIIPKIYKFAEEDLQINFAISLHAPNSELRSK 241
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
+MPINR YKL L+E ++ ++ + ++ FEY + G ND + A+ L L++G+ C +
Sbjct: 242 LMPINRAYKLPDLMEAIKYYVN-RTGRRITFEYGLFGGENDQVEHAEELAALLKGVKCHV 300
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI N + T E++ F L G V +R +G D AACGQL
Sbjct: 301 NLIPVNYVPERDYVRTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACGQL 352
>DICTYBASE|DDB_G0288255 [details] [associations]
symbol:DDB_G0288255 "putative ribosomal RNA large
subunit methyltransferase N" species:44689 "Dictyostelium
discoideum" [GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
dictyBase:DDB_G0288255 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AAFI02000109 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0820 TIGRFAMs:TIGR00048 OMA:EMVFIPD
RefSeq:XP_636811.1 ProteinModelPortal:Q54J76 STRING:Q54J76
EnsemblProtists:DDB0304824 GeneID:8626528 KEGG:ddi:DDB_G0288255
InParanoid:Q54J76 Uniprot:Q54J76
Length = 407
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 132/348 (37%), Positives = 191/348 (54%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
++ L G+ EL+ V + + +W +Y I + E ++K+ ++ +
Sbjct: 48 KINLIGIQKDELEDKVLKLGYPKYLSEQIWAFMYNKGIVD--INSFERVSKEKREEIKSK 105
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
E + S DGTRK+L D G +E+V IP + R T+CVSSQVGC C FC
Sbjct: 106 YEVNIGEITKHQLSVDGTRKLLISFD-GAEVESVFIPEGK-RGTLCVSSQVGCTFACTFC 163
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVGSITNVVFMGMGEPLHNVENVIKA 287
+TG R+LTA+EIV Q + R +L SS ++TN+VFMG GEP +N NV KA
Sbjct: 164 HTGTQKFIRNLTASEIVSQVIATRHVLNDFTDSSIKRTLTNIVFMGQGEPFYNYRNVSKA 223
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE-SNCALAVSLNATTDEVRNWIMPINR 346
I+ GL K+TVSTSG+VP + + ++ LA+SL++ D+ R+ I+P NR
Sbjct: 224 IKIITDPNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLAISLHSANDKTRSEIVPANR 283
Query: 347 KYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
++ + L+E + F N K + EYVML GVNDS DA L+ L + P +NLI
Sbjct: 284 QWPISELVEAC---IKFSKNCKERITIEYVMLKGVNDSEQDAYDLVKLSKSFPSFVNLIP 340
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP GSQ+ ++ E + +F IL G V +R RG D +AACGQL
Sbjct: 341 FNPWPGSQYKSSSKETISQFSKILDDKGIKVTIRQPRGRDILAACGQL 388
>UNIPROTKB|Q723G9 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:265669 "Listeria monocytogenes
serotype 4b str. F2365" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 ProtClustDB:PRK14455
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_013115.1
ProteinModelPortal:Q723G9 STRING:Q723G9 GeneID:2797600
KEGG:lmf:LMOf2365_0509 PATRIC:20322220 OMA:LRTINDD Uniprot:Q723G9
Length = 367
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 125/346 (36%), Positives = 191/346 (55%)
Query: 118 GMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA 177
G+++T+L +W+ +H + +A +W LY + +E+ + K+ ++L+ +
Sbjct: 8 GLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTF--EEMSNVPKETIELLTANFVMNT 65
Query: 178 LSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM 237
L + + S+DGT K LF L DG +IETV++ G +VCV++QVGC + C FC +G +
Sbjct: 66 LEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYG-LSVCVTTQVGCNIGCTFCASGLL 124
Query: 238 GLKRHLTAAEIVEQAVFARRLLSSE--VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
R LTA EIVEQ + + L +++VV MG+GEP N +NV+ ++ H++
Sbjct: 125 KKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVVMGIGEPFDNYDNVMDFLRVINHDK 184
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
GL R +TVSTSGL P++ F NE LA+SL+A +E+R IM IN+ Y I
Sbjct: 185 GLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINKTYS----I 240
Query: 355 ETLREELHF---KNNYKVLFEYVMLAGVNDSFDDAKRLIGLV--QGIPCKINLISFNP-- 407
E L E +H+ K N ++ FEY+ML GVND +A L L+ +NLI +NP
Sbjct: 241 EKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAALLGEHRHLAYVNLIPYNPVD 300
Query: 408 -HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
H + +T E ++ F + L G +R G D AACGQL
Sbjct: 301 EHI--DYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQL 344
>TAIR|locus:2091161 [details] [associations]
symbol:AT3G19630 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM;IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] InterPro:IPR004383
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 GO:GO:0005737 EMBL:CP002686 Gene3D:3.20.20.70
GO:GO:0051536 GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
EMBL:BT003921 EMBL:BT005008 IPI:IPI00533080 RefSeq:NP_188597.1
UniGene:At.38376 ProteinModelPortal:Q84JV6 SMR:Q84JV6 STRING:Q84JV6
PRIDE:Q84JV6 DNASU:821500 EnsemblPlants:AT3G19630.1 GeneID:821500
KEGG:ath:AT3G19630 TAIR:At3g19630 InParanoid:Q84JV6 OMA:IFIEYIM
PhylomeDB:Q84JV6 ProtClustDB:CLSN2684692 ArrayExpress:Q84JV6
Genevestigator:Q84JV6 Uniprot:Q84JV6
Length = 372
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 131/352 (37%), Positives = 187/352 (53%)
Query: 122 TELQQWVRSHAFRPGQALMLWKRLYG--DDIWAHCTDELEGLNKDFKKMLSEHAEFRAL- 178
+E++ S P A+ +WK + D +W DE+ L +L H++F+ L
Sbjct: 10 SEIKSEFESAGINPKFAIQIWKYVIQNPDCVW----DEIPSLPSAAYSLL--HSKFKTLT 63
Query: 179 -SLKDILTSSDGTR-KILFMLDDGLVIETVVI------------PCNRG-RTTVCVSSQV 223
SL + SSDGT K+L L +G +E VV+ P G R+T+C+SSQV
Sbjct: 64 SSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQV 123
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVEN 283
GC M C FC TG MG K +LT+ EIVEQ V A R + I N+VFMGMGEPL+N
Sbjct: 124 GCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASR-----IADIRNIVFMGMGEPLNNYNA 178
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE-SNCALAVSLNATTDEVRNWIM 342
V++A +M++ Q SP+++T+ST G+V + + N+ +LAVSL+A E+R IM
Sbjct: 179 VVEAVRVMLN-QPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIM 237
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
P R + L L++ L + + K+ EY+ML GVND A L L++ INL
Sbjct: 238 PAARAFPLQKLMDAL-QTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINL 296
Query: 403 ISFNP-HCGSQFTPTTDEKMIEFRNILAGA-GCTVFLRLSRGDDQMAACGQL 452
I FNP SQF ++ + + F+ IL +R G D ACGQL
Sbjct: 297 IPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQL 348
>TAIR|locus:2043225 [details] [associations]
symbol:AT2G39670 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006364 "rRNA processing"
evidence=IEA;RCA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 EMBL:CP002685 Gene3D:3.20.20.70 GO:GO:0051536
GO:GO:0006364 GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048
IPI:IPI00528130 RefSeq:NP_850319.1 UniGene:At.24979
ProteinModelPortal:F4IVY6 SMR:F4IVY6 PRIDE:F4IVY6
EnsemblPlants:AT2G39670.2 GeneID:818550 KEGG:ath:AT2G39670
OMA:KEHAEAV PhylomeDB:F4IVY6 Uniprot:F4IVY6
Length = 431
Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
Identities = 129/369 (34%), Positives = 195/369 (52%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSHA--FRPG-QALMLWKRLYGDDIWAHCTDELEGLNKD 164
P S VL+ GMS ELQ+ + F+ G + L +Y + + ++ L
Sbjct: 57 PHVDSHVLI-GMSEPELQELAINLVLIFQEGYRGKQLHHLIYKRKV--NKVEDFSNLPLT 113
Query: 165 FKKMLSEHAEFRA--LSLKDILTSSDGTRKILFMLDDGLVIETVVIPCN---RG--RTTV 217
F+K L + F+ + +T++DGT K+L L+D L+IETV IP +G R T
Sbjct: 114 FRKGLVDGG-FKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTA 172
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP 277
CVSSQVGC + C FC TG+ G R+L EI+EQ + + V TNVVFMGMGEP
Sbjct: 173 CVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRV---TNVVFMGMGEP 229
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDE 336
+ N+++V+ A + + + R +T+ST G+ +K+ + LAVSL+A
Sbjct: 230 MLNLKSVLDAHRCL--NKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQS 287
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ-- 394
+R I+P + Y L +++ R+ + N +V FEY +LAGVND + A L L++
Sbjct: 288 LREKIVPSAKAYPLEAIMKDCRDYFQ-ETNRRVSFEYALLAGVNDQVEHAVELAELLREW 346
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
G +NLI +NP GS++ + ++ F L T +R +RG D AACGQL N
Sbjct: 347 GKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRN 406
Query: 455 PGAIQAPLL 463
++PLL
Sbjct: 407 KFQ-KSPLL 414
>UNIPROTKB|Q3AC22 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_360312.1 ProteinModelPortal:Q3AC22 STRING:Q3AC22
GeneID:3728344 KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 113/299 (37%), Positives = 165/299 (55%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR-KILFMLDDGLVIETVVIPCNRGR 214
+++ L ++ L E+ +L + S DG K L L D L IE V++ G
Sbjct: 42 NKMTNLPVRLREKLKENFLLPSLKIIHSKKSRDGQSIKYLLKLKDNLGIEAVLLKYRYGN 101
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 274
T VC+S+QVGC M C+FC TG G R+LTA E++EQ + + SSE IT VV MG
Sbjct: 102 T-VCLSTQVGCKMGCKFCATGLGGFSRNLTAGEMIEQ-ILVLKASSSE--KITRVVLMGS 157
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNAT 333
GEPL N V+K + + L+ S RK+TVST G+VPQ+K E LA+SL+A
Sbjct: 158 GEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAP 217
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
D +RN ++PIN+++ L L++ + K +V FEY ++ VND+ + A +L L+
Sbjct: 218 DDALRNELIPINKRWGLAELLDAAWYFID-KTGRRVSFEYALIENVNDTVEHALKLAQLL 276
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
Q +NLI +N F + EK+ +F+ +L AG V +R GD+ ACGQL
Sbjct: 277 QRKLVHVNLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGACGQL 335
>TIGR_CMR|CHY_1480 [details] [associations]
symbol:CHY_1480 "radical SAM enzyme, Cfr family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_360312.1
ProteinModelPortal:Q3AC22 STRING:Q3AC22 GeneID:3728344
KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 113/299 (37%), Positives = 165/299 (55%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR-KILFMLDDGLVIETVVIPCNRGR 214
+++ L ++ L E+ +L + S DG K L L D L IE V++ G
Sbjct: 42 NKMTNLPVRLREKLKENFLLPSLKIIHSKKSRDGQSIKYLLKLKDNLGIEAVLLKYRYGN 101
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 274
T VC+S+QVGC M C+FC TG G R+LTA E++EQ + + SSE IT VV MG
Sbjct: 102 T-VCLSTQVGCKMGCKFCATGLGGFSRNLTAGEMIEQ-ILVLKASSSE--KITRVVLMGS 157
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNAT 333
GEPL N V+K + + L+ S RK+TVST G+VPQ+K E LA+SL+A
Sbjct: 158 GEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAP 217
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
D +RN ++PIN+++ L L++ + K +V FEY ++ VND+ + A +L L+
Sbjct: 218 DDALRNELIPINKRWGLAELLDAAWYFID-KTGRRVSFEYALIENVNDTVEHALKLAQLL 276
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
Q +NLI +N F + EK+ +F+ +L AG V +R GD+ ACGQL
Sbjct: 277 QRKLVHVNLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGACGQL 335
>UNIPROTKB|O83107 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:243276 "Treponema pallidum subsp.
pallidum str. Nichols" [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
EMBL:AE000520 GenomeReviews:AE000520_GR eggNOG:COG0820 KO:K06941
GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:D71371 RefSeq:NP_218508.1
ProteinModelPortal:O83107 IntAct:O83107 GeneID:2611395
KEGG:tpa:TP0068 PATRIC:20530073 OMA:EMVFIPD ProtClustDB:CLSK218510
Uniprot:O83107
Length = 340
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 105/312 (33%), Positives = 155/312 (49%)
Query: 150 IWAHCTD--ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVV 207
I A CTD + L+ + + L+ + L DGT K+ L D +E V+
Sbjct: 34 IAAGCTDFHAMSDLSSETRARLARACVISDTRVYTTLRDVDGTLKLGIELKDKRRVEAVL 93
Query: 208 IPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSIT 267
+ R T C+S QVGC M C FC TG++G R+L+A+EIVEQ + R VG++
Sbjct: 94 LVDQVSRKTACLSCQVGCPMACAFCQTGQLGFARNLSASEIVEQFLHLERC----VGTLD 149
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCAL 326
NVVFMGMGEP+ N++ V +A I+ H QG S +++T+STSG + + + L
Sbjct: 150 NVVFMGMGEPMLNLDAVCRAIEILSHPQGRDLSEKRITISTSGHCRGIYSLADRALQVRL 209
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
AVSL +R +MP L L +R + K+ +V E ++ GVN S A
Sbjct: 210 AVSLTTANAPLRARLMPRAAHDSLAKLKSAIRY-FNEKSGKRVTLELALMRGVNTSERHA 268
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+ +I G+ +NLI +NP F + ++ F +L A V R RG+
Sbjct: 269 QEVIDFAHGLNVHVNLIPWNPVASIHFETPREVEVAHFEALLMRARIPVTRRYQRGNGIG 328
Query: 447 AACGQLGNPGAI 458
ACGQLG +
Sbjct: 329 GACGQLGKTAGV 340
>UNIPROTKB|P0A644 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1773 "Mycobacterium tuberculosis"
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005886 GO:GO:0005737
GO:GO:0005618 Gene3D:3.20.20.70 EMBL:AE000516
GenomeReviews:AE000516_GR GO:GO:0046872 GO:GO:0051539 GO:GO:0008033
EMBL:BX842581 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:B70924 PIR:C70924
RefSeq:NP_217395.1 RefSeq:NP_217396.1 RefSeq:NP_337458.1
ProteinModelPortal:P0A644 SMR:P0A644 PRIDE:P0A644
EnsemblBacteria:EBMYCT00000003622 EnsemblBacteria:EBMYCT00000071511
GeneID:887156 GeneID:887810 GeneID:925333 KEGG:mtc:MT2947
KEGG:mtu:Rv2879c KEGG:mtu:Rv2880c TubercuList:Rv2879c
TubercuList:Rv2880c ProtClustDB:CLSK792141 Uniprot:P0A644
Length = 364
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 105/284 (36%), Positives = 150/284 (52%)
Query: 182 DILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKR 241
DI + TRK L+ DG + E+V++ R R TVC+SSQ GC M C FC TG+ GL R
Sbjct: 84 DITCDAGQTRKTLWRAVDGTMFESVLMRYPR-RNTVCISSQAGCGMACPFCATGQGGLTR 142
Query: 242 HLTAAEIVEQAVFARRLLSSEVGS-ITNVVFMGMGEPLHNVENVIKAANIMVHE--QGLH 298
+L+ AEI+EQ L + G ++NVVFMGMGEPL N V+ A + G
Sbjct: 143 NLSTAEILEQVRAGAAALRDDFGDRLSNVVFMGMGEPLANYARVLAAVQRITARPPSGFG 202
Query: 299 FSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R VTVST GL P ++ + LA+SL+A D +R+ ++P+N ++++ ++
Sbjct: 203 ISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLRDTLVPVNNRWRISEALDAA 262
Query: 358 REELHFKNNYKVLFEYVMLAGVNDS---FDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
R + +V EY ++ VND D + + V G +NLI NP GS +
Sbjct: 263 RYYANVTGR-RVSIEYALIRDVNDQPWRADLLGKRLHRVLGPLAHVNLIPLNPTPGSDWD 321
Query: 415 PTTDEKMIEF-RNILA-GAGCTVFLRLSRGDDQMAACGQLGNPG 456
+ EF + + A G CTV R +RG + AACGQL G
Sbjct: 322 ASPKPVEREFVKRVRAKGVSCTV--RDTRGREISAACGQLAAVG 363
>GENEDB_PFALCIPARUM|PF14_0066 [details] [associations]
symbol:PF14_0066 "radical SAM protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 95/308 (30%), Positives = 151/308 (49%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGR 214
++++ + + ++ L LS+K I D K+LF D IE + +
Sbjct: 40 NKMKNIPTEIRRELKNIFHNNILSIKPIKELKYDRAYKVLFQCKDNEKIEATSLDFGSHK 99
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 274
+ +C+SSQ+GC+ C+FC TG++G+KR L EI +Q ++ S+ I N+ FMGM
Sbjct: 100 S-LCISSQIGCSFGCKFCATGQIGIKRQLDIDEITDQLLY----FQSKGVDIKNISFMGM 154
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE-SNCALAVSLNAT 333
GEPL N V + S R++ +ST GL+P +K+ N LA SL++
Sbjct: 155 GEPLAN-PYVFDSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSP 213
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
E R+ ++PIN+ + + + L E + K +V Y+++ +NDS D A+ L +
Sbjct: 214 FTEERDQLVPINKLFPFNEVFDLLDERIA-KTGRRVWISYILIKNLNDSKDHAEALSDHI 272
Query: 394 QGIPCKIN------LISFNP--HCGSQFTPTTD-EKMIEFRNILAGAGCTVFLRLSRGDD 444
P I LI +N + F D EK+++F IL G + F R S G
Sbjct: 273 CKRPNNIRYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKNGISFFYRNSFGYS 332
Query: 445 QMAACGQL 452
AACGQL
Sbjct: 333 IDAACGQL 340
>UNIPROTKB|Q8IM25 [details] [associations]
symbol:PF14_0066 "Radical SAM protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 95/308 (30%), Positives = 151/308 (49%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGR 214
++++ + + ++ L LS+K I D K+LF D IE + +
Sbjct: 40 NKMKNIPTEIRRELKNIFHNNILSIKPIKELKYDRAYKVLFQCKDNEKIEATSLDFGSHK 99
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 274
+ +C+SSQ+GC+ C+FC TG++G+KR L EI +Q ++ S+ I N+ FMGM
Sbjct: 100 S-LCISSQIGCSFGCKFCATGQIGIKRQLDIDEITDQLLY----FQSKGVDIKNISFMGM 154
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE-SNCALAVSLNAT 333
GEPL N V + S R++ +ST GL+P +K+ N LA SL++
Sbjct: 155 GEPLAN-PYVFDSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHSP 213
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
E R+ ++PIN+ + + + L E + K +V Y+++ +NDS D A+ L +
Sbjct: 214 FTEERDQLVPINKLFPFNEVFDLLDERIA-KTGRRVWISYILIKNLNDSKDHAEALSDHI 272
Query: 394 QGIPCKIN------LISFNP--HCGSQFTPTTD-EKMIEFRNILAGAGCTVFLRLSRGDD 444
P I LI +N + F D EK+++F IL G + F R S G
Sbjct: 273 CKRPNNIRYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKNGISFFYRNSFGYS 332
Query: 445 QMAACGQL 452
AACGQL
Sbjct: 333 IDAACGQL 340
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.135 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 477 477 0.00079 119 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 619 (66 KB)
Total size of DFA: 284 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.80u 0.10s 38.90t Elapsed: 00:00:02
Total cpu time: 38.81u 0.10s 38.91t Elapsed: 00:00:02
Start: Sat May 11 15:17:13 2013 End: Sat May 11 15:17:15 2013