BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011810
(477 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296086557|emb|CBI32146.3| unnamed protein product [Vitis vinifera]
Length = 439
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/414 (77%), Positives = 355/414 (85%), Gaps = 1/414 (0%)
Query: 61 PPPITFLSPV-SPTRRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGM 119
P P L P+ S R LS A S IP+ + + + N P KGS+VLLKGM
Sbjct: 25 PIPFPHLKPLLSLHHRSLSIAASSSTIPVYSTYHHHHHPSSAADENGNPIKGSKVLLKGM 84
Query: 120 SFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALS 179
+ ELQ WV+SH +RPGQALMLWKRLYG++IWAHC DELEGLNKDFK MLSEHAEF+AL+
Sbjct: 85 RYFELQNWVQSHGYRPGQALMLWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKALT 144
Query: 180 LKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL 239
LKD + +SDGTRKILF LDDGLVIETV+IPC+RGR TVCVSSQVGCAMNCQFCYTGRMGL
Sbjct: 145 LKDSIKASDGTRKILFTLDDGLVIETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGL 204
Query: 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
RHLTAAEIVEQAV+ARRL SSEVGSITNVVFMGMGEP HN+E+VIKAA+IMVH+QGLHF
Sbjct: 205 TRHLTAAEIVEQAVYARRLFSSEVGSITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHF 264
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
SPRKVTVSTSGLVPQLK FL ESNCALAVSLNATTDEVRNW+MPINRKY L LL++TLRE
Sbjct: 265 SPRKVTVSTSGLVPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLRE 324
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
EL K+NYKVLFEYVMLAGVNDS +DA+RLI LVQGIPCK+NLISFNPHCGSQF PT++E
Sbjct: 325 ELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEE 384
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAI 473
K+IEFRNILA AGC VFLR SRGDDQMAACGQLG PG +QAPLLRVP KFQ+A+
Sbjct: 385 KIIEFRNILAEAGCIVFLRPSRGDDQMAACGQLGKPGQVQAPLLRVPAKFQSAL 438
>gi|359473450|ref|XP_002264209.2| PREDICTED: uncharacterized protein LOC100267261 [Vitis vinifera]
Length = 907
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/400 (77%), Positives = 342/400 (85%), Gaps = 1/400 (0%)
Query: 61 PPPITFLSPV-SPTRRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGM 119
P P L P+ S R LS A S IP+ + + + N P KGS+VLLKGM
Sbjct: 25 PIPFPHLKPLLSLHHRSLSIAASSSTIPVYSTYHHHHHPSSAADENGNPIKGSKVLLKGM 84
Query: 120 SFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALS 179
+ ELQ WV+SH +RPGQALMLWKRLYG++IWAHC DELEGLNKDFK MLSEHAEF+AL+
Sbjct: 85 RYFELQNWVQSHGYRPGQALMLWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKALT 144
Query: 180 LKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL 239
LKD + +SDGTRKILF LDDGLVIETV+IPC+RGR TVCVSSQVGCAMNCQFCYTGRMGL
Sbjct: 145 LKDSIKASDGTRKILFTLDDGLVIETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGL 204
Query: 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
RHLTAAEIVEQAV+ARRL SSEVGSITNVVFMGMGEP HN+E+VIKAA+IMVH+QGLHF
Sbjct: 205 TRHLTAAEIVEQAVYARRLFSSEVGSITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHF 264
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
SPRKVTVSTSGLVPQLK FL ESNCALAVSLNATTDEVRNW+MPINRKY L LL++TLRE
Sbjct: 265 SPRKVTVSTSGLVPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLRE 324
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
EL K+NYKVLFEYVMLAGVNDS +DA+RLI LVQGIPCK+NLISFNPHCGSQF PT++E
Sbjct: 325 ELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEE 384
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
K+IEFRNILA AGC VFLR SRGDDQMAACGQLG PG +Q
Sbjct: 385 KIIEFRNILAEAGCIVFLRPSRGDDQMAACGQLGKPGQVQ 424
>gi|449455661|ref|XP_004145570.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like
[Cucumis sativus]
Length = 482
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/362 (84%), Positives = 337/362 (93%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
S++LLKG+S+TEL++WV++ +RPGQALMLWKRLYGD+IWAH DELEGLNKDFKKML E
Sbjct: 117 SKMLLKGLSYTELEKWVQAQGYRPGQALMLWKRLYGDNIWAHTGDELEGLNKDFKKMLIE 176
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
+AEFRALSL++IL S DGTRKILF L+DGL+IETVVIPC+RGRTTVCVSSQVGCAMNCQF
Sbjct: 177 NAEFRALSLREILPSCDGTRKILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQF 236
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIM 291
CYTGRMGLKRHLTAAEIVEQAVFARRLL+SEVG ITNVVFMGMGEPLHN++NVIKA NIM
Sbjct: 237 CYTGRMGLKRHLTAAEIVEQAVFARRLLTSEVGLITNVVFMGMGEPLHNIDNVIKAVNIM 296
Query: 292 VHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 351
VHEQGLHFSPRKVTVSTSGLVPQLK+FLNE NCALAVSLNATTDEVRNWIMPINRKYKLG
Sbjct: 297 VHEQGLHFSPRKVTVSTSGLVPQLKRFLNECNCALAVSLNATTDEVRNWIMPINRKYKLG 356
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
LL++TLREEL K+ YKVLFEYVMLAGVNDS +DAKR++ LVQGIPCKINLISFNPHCGS
Sbjct: 357 LLLQTLREELRCKHKYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLISFNPHCGS 416
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQT 471
QF PT EKMI FRN+LA AG TVFLRLSRGDDQMAACGQLG PG +QAPLLRVP++FQ
Sbjct: 417 QFRPTCKEKMIGFRNVLAEAGLTVFLRLSRGDDQMAACGQLGKPGIVQAPLLRVPDRFQM 476
Query: 472 AI 473
A+
Sbjct: 477 AM 478
>gi|356524059|ref|XP_003530650.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Glycine max]
Length = 445
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/425 (74%), Positives = 361/425 (84%), Gaps = 10/425 (2%)
Query: 52 LSTFFPSSNPPPITFLSPVSPTRRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKG 111
S + ++P I+ L+ RR LS ++ L SD G GD++ + +G
Sbjct: 30 FSFYLTKTSPFSISVLTR---QRRFLSVSS------LTADHHNLSDFGDGDSV-AISNEG 79
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
++LLKGM++ EL++WV+SH +RPGQA+MLWKR+YG++IWAH DELEGLNKDFKKML+E
Sbjct: 80 LKMLLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNE 139
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
+AEF+AL+ K+I T+SDGTRKILF L+DGLVIETVVIPC+RGRTTVCVSSQVGCAMNCQF
Sbjct: 140 NAEFKALTQKEIRTASDGTRKILFTLEDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQF 199
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIM 291
CYTGRMGL+RHLTAAEIVEQAVFARRLL+ EVGSITNVVFMGMGEPLHN++NVIKAA+IM
Sbjct: 200 CYTGRMGLRRHLTAAEIVEQAVFARRLLTDEVGSITNVVFMGMGEPLHNIDNVIKAADIM 259
Query: 292 VHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 351
V EQGL FSPRKVT+STSGLVPQLK+FL+ESNCALAVSLNATTDEVRNWIMPINRKYKL
Sbjct: 260 VDEQGLQFSPRKVTISTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLE 319
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
LL++TLREEL FK NYKVLFEYVML GVNDS DA+RLI LV+GIPCKINLISFNPH GS
Sbjct: 320 LLLQTLREELCFKKNYKVLFEYVMLEGVNDSDGDAERLIELVKGIPCKINLISFNPHSGS 379
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQT 471
F PT DE+MIEFRN LAGAG V LRLSRGDDQMAACGQLG PG IQAPLLRVPE+FQ
Sbjct: 380 FFKPTKDERMIEFRNTLAGAGLVVILRLSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQM 439
Query: 472 AINAS 476
AI +S
Sbjct: 440 AIGSS 444
>gi|18406673|ref|NP_564755.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|15451230|gb|AAK96886.1| Unknown protein [Arabidopsis thaliana]
gi|20148295|gb|AAM10038.1| unknown protein [Arabidopsis thaliana]
gi|332195547|gb|AEE33668.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 458
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/390 (76%), Positives = 339/390 (86%), Gaps = 5/390 (1%)
Query: 88 LATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG 147
L ++E+Y S G +V +V+LKGM++ LQ+WV+SH FRPGQALMLWKRLY
Sbjct: 74 LPSLEEYPSAKG-----SVKRDDNQKVVLKGMTYASLQEWVQSHGFRPGQALMLWKRLYK 128
Query: 148 DDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVV 207
D+IWA+ DELEGLNKD K+M+SEHAEF ALS KDI ++SDGTRKILF LDDGLVIETVV
Sbjct: 129 DNIWANNVDELEGLNKDLKRMISEHAEFGALSFKDIRSASDGTRKILFTLDDGLVIETVV 188
Query: 208 IPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSIT 267
IPC+RGRTTVCVSSQVGCAMNCQFCYTGRMGLKR+LT AEIVEQAV+ARRLLS EVGSIT
Sbjct: 189 IPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGSIT 248
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
NVVFMGMGEP HN++NVIKAANIMV E GLHFSPRKVTVSTSGLVPQLK+FL ESNCALA
Sbjct: 249 NVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALA 308
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
VSLNATTDEVRNWIMPINRKYKL LL+ETLRE L ++ YKVLFEYVMLAGVNDS DDA+
Sbjct: 309 VSLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDAR 368
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RL+ LVQGIPCKINLI FNPH GSQF T ++KMI+FRN+LA GCTV +R SRG+DQMA
Sbjct: 369 RLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMA 428
Query: 448 ACGQLGNPGAIQAPLLRVPEKFQTAINASI 477
ACGQLG GA+QAP++RVPE+F+TA+ AS+
Sbjct: 429 ACGQLGMIGAVQAPVMRVPEQFRTALKASV 458
>gi|297837501|ref|XP_002886632.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297332473|gb|EFH62891.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 458
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/390 (76%), Positives = 338/390 (86%), Gaps = 5/390 (1%)
Query: 88 LATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG 147
L ++E+Y S G +V +V+LKGM++ LQ+WV+SH FRPGQALMLWKRLY
Sbjct: 74 LPSLEEYPSTKG-----SVARDDNQKVILKGMTYAALQEWVQSHGFRPGQALMLWKRLYK 128
Query: 148 DDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVV 207
D+IWA+ DELEGLNKD K+M+SEHAEF ALS KDI ++SDGTRKILF LDDGLVIETVV
Sbjct: 129 DNIWANNVDELEGLNKDLKRMISEHAEFGALSFKDIRSASDGTRKILFTLDDGLVIETVV 188
Query: 208 IPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSIT 267
IPC+RGRTTVCVSSQVGCAMNCQFCYTGRMGLKR+LT AEIVEQAV+ARRLLS EVGSIT
Sbjct: 189 IPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGSIT 248
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
NVVFMGMGEP HN++NVIKAANIMV E GLHFSPRKVTVSTSGLVPQLK+FL ESNCALA
Sbjct: 249 NVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALA 308
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
VSLNATTDEVRNWIMPINRKYKL LL+ETLRE L K+ YKVLFEYVMLAGVNDS DDA+
Sbjct: 309 VSLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSKHKYKVLFEYVMLAGVNDSMDDAR 368
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RL+ LVQGIPCKINLI FNPH GSQF T ++KMI+FRN+LA GCTV +R SRG+DQMA
Sbjct: 369 RLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMA 428
Query: 448 ACGQLGNPGAIQAPLLRVPEKFQTAINASI 477
ACGQLG GA+QAP++RVPE+F+ A+ AS+
Sbjct: 429 ACGQLGMIGAVQAPVMRVPEQFRAALKASV 458
>gi|3249072|gb|AAC24056.1| Contains similarity to hypothetical 43.1 KD protein in NDK-GCPE
intergenic region gb|493519 from E. coli sequence
gb|U02965 [Arabidopsis thaliana]
Length = 454
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/390 (76%), Positives = 339/390 (86%), Gaps = 5/390 (1%)
Query: 88 LATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG 147
L ++E+Y S G +V +V+LKGM++ LQ+WV+SH FRPGQALMLWKRLY
Sbjct: 70 LPSLEEYPSAKG-----SVKRDDNQKVVLKGMTYASLQEWVQSHGFRPGQALMLWKRLYK 124
Query: 148 DDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVV 207
D+IWA+ DELEGLNKD K+M+SEHAEF ALS KDI ++SDGTRKILF LDDGLVIETVV
Sbjct: 125 DNIWANNVDELEGLNKDLKRMISEHAEFGALSFKDIRSASDGTRKILFTLDDGLVIETVV 184
Query: 208 IPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSIT 267
IPC+RGRTTVCVSSQVGCAMNCQFCYTGRMGLKR+LT AEIVEQAV+ARRLLS EVGSIT
Sbjct: 185 IPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHEVGSIT 244
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
NVVFMGMGEP HN++NVIKAANIMV E GLHFSPRKVTVSTSGLVPQLK+FL ESNCALA
Sbjct: 245 NVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRESNCALA 304
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
VSLNATTDEVRNWIMPINRKYKL LL+ETLRE L ++ YKVLFEYVMLAGVNDS DDA+
Sbjct: 305 VSLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDAR 364
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RL+ LVQGIPCKINLI FNPH GSQF T ++KMI+FRN+LA GCTV +R SRG+DQMA
Sbjct: 365 RLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRGNDQMA 424
Query: 448 ACGQLGNPGAIQAPLLRVPEKFQTAINASI 477
ACGQLG GA+QAP++RVPE+F+TA+ AS+
Sbjct: 425 ACGQLGMIGAVQAPVMRVPEQFRTALKASV 454
>gi|255568836|ref|XP_002525389.1| catalytic, putative [Ricinus communis]
gi|223535352|gb|EEF37027.1| catalytic, putative [Ricinus communis]
Length = 861
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 324/472 (68%), Positives = 370/472 (78%), Gaps = 46/472 (9%)
Query: 9 MEVGSVWMRLVRVRGGAPSVFL----MKPSAVSSSSKTTRTIRYKNHLSTFFPSSNPPP- 63
MEVG +WMR +RV V L +KP +S+ PPP
Sbjct: 1 MEVGCMWMRRMRV------VLLVSRPLKPPLLSA----------------------PPPN 32
Query: 64 --ITFLSPVSPTRRPLSTAT-CSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMS 120
+ F S S R LST+T CS +PL I G D+ + +P K +VLLKGMS
Sbjct: 33 LHLHFTSLFSSARSSLSTSTACSSPLPLLNI--------GSDDTSAIPNKDGKVLLKGMS 84
Query: 121 FTELQQWVRSHAFRPGQALMLWKRLYG-DDIWAHCTDELEGLNKDFKKMLSEHAEFRALS 179
+TEL++WV+SH FRPGQA+MLWKRLY ++ AH DELEGLNKDFKKMLSEHA +A+S
Sbjct: 85 YTELEKWVQSHGFRPGQAMMLWKRLYANNNTLAHYFDELEGLNKDFKKMLSEHARLKAIS 144
Query: 180 LKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL 239
++D++T+SDGT+KILF LDD +VIETV+IPC+RGRTTVCVSSQVGCAMNCQFCYTGRMGL
Sbjct: 145 MEDVVTASDGTKKILFRLDDEMVIETVIIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGL 204
Query: 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
KRHLT AEIV+Q V A+RLL+S+ GSITNVVFMGMGEPL N+ENVIKAA+IMVH+QGLHF
Sbjct: 205 KRHLTTAEIVDQVVSAQRLLTSDAGSITNVVFMGMGEPLQNIENVIKAADIMVHDQGLHF 264
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
SPRKVT+STSGLVPQLK+FL ESNCALAVSLNATTDEVRNWIMPINRKY LGLL++TLR+
Sbjct: 265 SPRKVTISTSGLVPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYNLGLLLDTLRK 324
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
ELHFKNNYKVLFEYVMLAGVNDS +DA+RL LVQGIPCKINLI FNPH GSQF PT+ E
Sbjct: 325 ELHFKNNYKVLFEYVMLAGVNDSLEDAERLSDLVQGIPCKINLIQFNPHSGSQFRPTSKE 384
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVP-EKFQ 470
KMIEFRNILA A CTVFLR SRGDDQMAACGQLG PGAIQ L V E+FQ
Sbjct: 385 KMIEFRNILAEAKCTVFLRDSRGDDQMAACGQLGKPGAIQLFLKFVDTEQFQ 436
>gi|115438803|ref|NP_001043681.1| Os01g0640800 [Oryza sativa Japonica Group]
gi|113533212|dbj|BAF05595.1| Os01g0640800 [Oryza sativa Japonica Group]
gi|218188735|gb|EEC71162.1| hypothetical protein OsI_03021 [Oryza sativa Indica Group]
gi|222618932|gb|EEE55064.1| hypothetical protein OsJ_02780 [Oryza sativa Japonica Group]
Length = 405
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/416 (71%), Positives = 331/416 (79%), Gaps = 29/416 (6%)
Query: 58 SSNPPPITFLSPVSPTRRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLK 117
SS PP S + RRP + A C P GSRV+LK
Sbjct: 19 SSAPPSSRLFSAL---RRPPAAARCEP--------------------------GSRVMLK 49
Query: 118 GMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA 177
GM + EL+ WVRS FRPGQA+MLWK LYG+++WAHC DEL GLNKDF+KML++HA+ +A
Sbjct: 50 GMDYPELENWVRSQGFRPGQAMMLWKCLYGNNVWAHCYDELAGLNKDFRKMLTDHADLKA 109
Query: 178 LSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM 237
L++KDIL +SDGTRKILF L+DG VIETVVIPC GRTTVCVSSQVGCAMNCQFC+TGRM
Sbjct: 110 LTVKDILNASDGTRKILFSLEDGSVIETVVIPCTSGRTTVCVSSQVGCAMNCQFCFTGRM 169
Query: 238 GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
GL++HL+ AEIVEQAVFARRL S E GSITNVVFMGMGEPLHN++NV+KA+ IMV EQGL
Sbjct: 170 GLRKHLSTAEIVEQAVFARRLFSDEFGSITNVVFMGMGEPLHNIDNVLKASAIMVDEQGL 229
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
FSPRKVTVSTSGLVPQ+K+FL ESNCALAVSLNATTDEVRNWIMPINRKY L LL+ TL
Sbjct: 230 QFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNATTDEVRNWIMPINRKYNLSLLLGTL 289
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
REE+ K YKV FEYVMLAGVNDS DDAKRL+ LV+GIPCKINLISFNPH GSQF PT
Sbjct: 290 REEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDLVRGIPCKINLISFNPHSGSQFKPTP 349
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAI 473
DEK+IEFRNIL G VF+RLSRGDDQMAACGQLG PG Q PLLRVPEKFQ A+
Sbjct: 350 DEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQLGEPGDYQLPLLRVPEKFQVAL 405
>gi|194700820|gb|ACF84494.1| unknown [Zea mays]
gi|413950759|gb|AFW83408.1| hypothetical protein ZEAMMB73_769953 [Zea mays]
Length = 409
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 278/365 (76%), Positives = 320/365 (87%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+ GS+ +LKGM ++EL+ WV++ FRPGQA+MLWK LYG+++WAHC DEL GLNKDF+KM
Sbjct: 45 EAGSKAMLKGMDYSELENWVQAQGFRPGQAMMLWKCLYGNNVWAHCYDELAGLNKDFRKM 104
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
++EHA+ +AL++KDI +SDGTRKILF L+DG VIETV+IPC RGRTT+CVSSQVGCAMN
Sbjct: 105 ITEHADLKALTMKDIHIASDGTRKILFSLEDGSVIETVIIPCARGRTTICVSSQVGCAMN 164
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAA 288
CQFC+TGRMGL++HL+ AEIVEQAVFARRL S E+GSI NVVFMGMGEP HN++NVIKA+
Sbjct: 165 CQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELGSINNVVFMGMGEPFHNIDNVIKAS 224
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
IMV EQGLHFSPRKVTVSTSGLVPQLK+FL ESNC+LAVSLNATTDEVRNWIMPINRKY
Sbjct: 225 AIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLQESNCSLAVSLNATTDEVRNWIMPINRKY 284
Query: 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 408
L LL+ TLREEL+ + VLFEYVML+GVNDS DDAKRLI LVQGIPCKINLISFNPH
Sbjct: 285 NLNLLLGTLREELNLRQKQIVLFEYVMLSGVNDSMDDAKRLIELVQGIPCKINLISFNPH 344
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
GSQF PT D+K+IEFRN+L G TVF+RLSRGDDQMAACGQLG PG Q PLLRVPEK
Sbjct: 345 GGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAACGQLGEPGGYQLPLLRVPEK 404
Query: 469 FQTAI 473
FQ A+
Sbjct: 405 FQVAL 409
>gi|242058145|ref|XP_002458218.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor]
gi|241930193|gb|EES03338.1| hypothetical protein SORBIDRAFT_03g029230 [Sorghum bicolor]
Length = 407
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 278/363 (76%), Positives = 317/363 (87%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
GS+ +LKGM ++EL+ WV++ FRPGQA+MLWK LYG+++WAHC DEL GLNKDF+KM++
Sbjct: 45 GSKAMLKGMDYSELENWVQAQGFRPGQAMMLWKCLYGNNVWAHCYDELTGLNKDFRKMIT 104
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQ 230
EHA+ +AL++KDI T+SDGTRKILF L+DG VIETV+IPC RGRTTVCVSSQVGCAMNCQ
Sbjct: 105 EHADLKALTVKDIHTASDGTRKILFSLEDGSVIETVIIPCARGRTTVCVSSQVGCAMNCQ 164
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290
FC+TGRMGL++HL+ AEIVEQAVFARRL S E GSI NVVFMGMGEP HN++NVIKA+ I
Sbjct: 165 FCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGSINNVVFMGMGEPFHNIDNVIKASAI 224
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350
MV QGL FSPRKVTVSTSGLVPQLK+FL ESNC+LAVSLNATTDEVRNWIMPINRKY L
Sbjct: 225 MVDGQGLQFSPRKVTVSTSGLVPQLKRFLQESNCSLAVSLNATTDEVRNWIMPINRKYNL 284
Query: 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
LL+ TLREEL+ + VLFEYVML+GVNDS DDAKRLI LVQGIPCKINLISFNPH G
Sbjct: 285 NLLLGTLREELNLRKKQIVLFEYVMLSGVNDSMDDAKRLIELVQGIPCKINLISFNPHGG 344
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
SQF PT D+K+IEFRN+L G TVF+RLSRGDDQMAACGQLG PG Q PLLRVPEKFQ
Sbjct: 345 SQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAACGQLGEPGDYQLPLLRVPEKFQ 404
Query: 471 TAI 473
A+
Sbjct: 405 VAL 407
>gi|224107843|ref|XP_002314621.1| predicted protein [Populus trichocarpa]
gi|222863661|gb|EEF00792.1| predicted protein [Populus trichocarpa]
Length = 369
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/369 (77%), Positives = 322/369 (87%), Gaps = 19/369 (5%)
Query: 126 QWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEG---------LNKDFKKMLSEHAEFR 176
+WV+S+ FRPGQA+MLWKRLYG+ IWAH DEL+G LNKDF KML EHA+F+
Sbjct: 1 EWVQSYGFRPGQAMMLWKRLYGNGIWAHHVDELQGILLSHPIYCLNKDFVKMLGEHAKFK 60
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
ALSL++ILT+SDGTRKILF LDDGLVIETVVIPC+RGRTTVCVSSQVGCAMNCQFC+TGR
Sbjct: 61 ALSLENILTASDGTRKILFRLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCFTGR 120
Query: 237 ----------MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286
MGLKRHL+ AEI+EQAVFA+RLL++EVG TNVVFMGMGEPL N+++VIK
Sbjct: 121 QANIFHFGTLMGLKRHLSTAEIIEQAVFAQRLLTNEVGPFTNVVFMGMGEPLQNIDSVIK 180
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
AA+IMVH+QGLHFSPRKVTVSTSGLVPQLK+FL+ESNCALAVSLNATTDEVRNWIMPINR
Sbjct: 181 AADIMVHDQGLHFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINR 240
Query: 347 KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
KY LGLL++TLREEL KN+YKVLFEYVML GVNDS DDA RLI LVQGIPCKINLI FN
Sbjct: 241 KYNLGLLLQTLREELGLKNSYKVLFEYVMLEGVNDSDDDAYRLIDLVQGIPCKINLIQFN 300
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVP 466
PHCGSQF PT+ EKMI+FRNILA A C VF+R S+GDDQMAACGQLG PGAIQ PL+RVP
Sbjct: 301 PHCGSQFRPTSTEKMIKFRNILAEAKCVVFMRYSKGDDQMAACGQLGKPGAIQTPLIRVP 360
Query: 467 EKFQTAINA 475
E+F+ A+NA
Sbjct: 361 EQFKMAVNA 369
>gi|357135665|ref|XP_003569429.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Brachypodium distachyon]
Length = 407
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/416 (68%), Positives = 324/416 (77%), Gaps = 29/416 (6%)
Query: 58 SSNPPPITFLSPVSPTRRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLK 117
S++PP S + RRP + C P GSRV+LK
Sbjct: 21 SASPPTRRLFSAL---RRPSAVVRCEP--------------------------GSRVMLK 51
Query: 118 GMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA 177
GM + EL++WV+S FRPGQA+MLWK LYG+++WAHC DEL GLNKD +KM+ E A+ +A
Sbjct: 52 GMDYPELEKWVQSQGFRPGQAMMLWKCLYGNNVWAHCHDELAGLNKDLRKMICELADLKA 111
Query: 178 LSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM 237
L++KDI+T+SDGTRKILF L++ VIETVVIP RGRTTVCVSSQVGCAMNCQFC+TGRM
Sbjct: 112 LTVKDIITASDGTRKILFSLENASVIETVVIPNARGRTTVCVSSQVGCAMNCQFCFTGRM 171
Query: 238 GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
GL++HL+ AEIVEQAVFAR+L S E GSITNVVFMGMGEPLHNV+NVIKA+ IMV EQGL
Sbjct: 172 GLRKHLSTAEIVEQAVFARKLFSDEFGSITNVVFMGMGEPLHNVDNVIKASAIMVDEQGL 231
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
FSPRKVTVSTSGLVPQ+K+FL+ES C LAVSLNATTDEVRNWIMPINRKY L LL+ TL
Sbjct: 232 QFSPRKVTVSTSGLVPQIKRFLHESKCDLAVSLNATTDEVRNWIMPINRKYNLNLLLGTL 291
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
REEL + VLFEYVMLA VNDS DDAKRL LV GI CKINLISFNPH GSQF PT
Sbjct: 292 REELRLRRKSIVLFEYVMLAEVNDSMDDAKRLTELVHGISCKINLISFNPHSGSQFKPTP 351
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAI 473
DEK+IEFRNIL +G TV +RLSRGDDQMAACGQLG PG Q PLLRVP+KFQ A+
Sbjct: 352 DEKIIEFRNILIQSGLTVMVRLSRGDDQMAACGQLGEPGDYQLPLLRVPDKFQVAL 407
>gi|116787825|gb|ABK24655.1| unknown [Picea sitchensis]
Length = 464
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 245/364 (67%), Positives = 298/364 (81%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+ ++ L+KGM++ EL+ WV+S ++R GQA+MLWK LYG+ +WA DE++ L+K F+ L
Sbjct: 99 ESAKTLVKGMTYHELEAWVQSLSYRAGQAMMLWKCLYGNGMWAQHVDEMQALSKQFRATL 158
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ AEF SLKD+ ++SDGTRKILF L DGL+IETV+IPC RGRTT+CVSSQVGCAMNC
Sbjct: 159 EKTAEFSVFSLKDVYSASDGTRKILFSLGDGLIIETVLIPCERGRTTLCVSSQVGCAMNC 218
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 289
QFCYTGRMGLKR+LTAAEIVEQ V+ARR ++EVG ITNVVFMGMGEPLHN +NV+KAA
Sbjct: 219 QFCYTGRMGLKRNLTAAEIVEQVVYARRHFTNEVGPITNVVFMGMGEPLHNFDNVLKAAE 278
Query: 290 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349
IMV GLHFSPRKVTVSTSGLVPQ+++F+ ES C LAVSLNATTDEVRNWIMPINRKY
Sbjct: 279 IMVDCHGLHFSPRKVTVSTSGLVPQIRRFIRESPCVLAVSLNATTDEVRNWIMPINRKYN 338
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
L +L+ LREE+ ++ +KVLFEYVML G+NDS DDA+RL+ LV+GIPCKINLISFNPH
Sbjct: 339 LDMLLTMLREEIGQRHKFKVLFEYVMLLGINDSLDDARRLVNLVEGIPCKINLISFNPHE 398
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKF 469
GS F P+T E+M+ F I+A AG F+R SRG+DQMAACGQLG PG Q P +R PE+F
Sbjct: 399 GSSFIPSTQEQMLAFHKIVADAGYATFIRHSRGNDQMAACGQLGKPGNSQPPRMRAPERF 458
Query: 470 QTAI 473
Q +
Sbjct: 459 QATL 462
>gi|194694544|gb|ACF81356.1| unknown [Zea mays]
Length = 266
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/262 (80%), Positives = 232/262 (88%)
Query: 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 271
RGRTT+CVSSQVGCAMNCQFC+TGRMGL++HL+ AEIVEQAVFARRL S E+GSI NVVF
Sbjct: 5 RGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDELGSINNVVF 64
Query: 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLN 331
MGMGEP HN++NVIKA+ IMV EQGLHFSPRKVTVSTSGLVPQLK+FL ESNC+LAVSLN
Sbjct: 65 MGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLQESNCSLAVSLN 124
Query: 332 ATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIG 391
ATTDEVRNWIMPINRKY L LL+ TLREEL+ + VLFEYVML+GVNDS DDAKRLI
Sbjct: 125 ATTDEVRNWIMPINRKYNLNLLLGTLREELNLRQKQIVLFEYVMLSGVNDSMDDAKRLIE 184
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
LVQGIPCKINLISFNPH GSQF PT D+K+IEFRN+L G TVF+RLSRGDDQMAACGQ
Sbjct: 185 LVQGIPCKINLISFNPHGGSQFKPTPDDKIIEFRNVLIQGGLTVFVRLSRGDDQMAACGQ 244
Query: 452 LGNPGAIQAPLLRVPEKFQTAI 473
LG PG Q PLLRVPEKFQ A+
Sbjct: 245 LGEPGGYQLPLLRVPEKFQVAL 266
>gi|55297177|dbj|BAD68852.1| florfenicol resistance protein-like [Oryza sativa Japonica Group]
Length = 247
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/247 (80%), Positives = 216/247 (87%)
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286
MNCQFC+TGRMGL++HL+ AEIVEQAVFARRL S E GSITNVVFMGMGEPLHN++NV+K
Sbjct: 1 MNCQFCFTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGSITNVVFMGMGEPLHNIDNVLK 60
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
A+ IMV EQGL FSPRKVTVSTSGLVPQ+K+FL ESNCALAVSLNATTDEVRNWIMPINR
Sbjct: 61 ASAIMVDEQGLQFSPRKVTVSTSGLVPQIKRFLQESNCALAVSLNATTDEVRNWIMPINR 120
Query: 347 KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
KY L LL+ TLREE+ K YKV FEYVMLAGVNDS DDAKRL+ LV+GIPCKINLISFN
Sbjct: 121 KYNLSLLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDLVRGIPCKINLISFN 180
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVP 466
PH GSQF PT DEK+IEFRNIL G VF+RLSRGDDQMAACGQLG PG Q PLLRVP
Sbjct: 181 PHSGSQFKPTPDEKIIEFRNILIQDGLVVFVRLSRGDDQMAACGQLGEPGDYQLPLLRVP 240
Query: 467 EKFQTAI 473
EKFQ A+
Sbjct: 241 EKFQVAL 247
>gi|168015505|ref|XP_001760291.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688671|gb|EDQ75047.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 433
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/383 (52%), Positives = 270/383 (70%), Gaps = 10/383 (2%)
Query: 74 RRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAF 133
++P + +P++ D+ G G N + +V LK M+F EL++WV SH
Sbjct: 40 QKPQAAGISAPEL------DFPGIVGDG-GFNAAGRAPRKVSLKDMTFPELERWVESHGH 92
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA-LSLKDILTSSDGTRK 192
+ +A MLW+ LYG+ W + LNK+F +L E AEF L L+D+ T+ DGTRK
Sbjct: 93 KASRAAMLWRHLYGNGKWVESPAVIPRLNKEFVSLLEERAEFAPNLQLRDVHTARDGTRK 152
Query: 193 ILFMLDD-GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
++F L++ G +ETVVIP RGR TVCVSSQ+GCAMNCQFC+T +MGL+ +L+ A+IVEQ
Sbjct: 153 LVFFLEEYGASVETVVIPGPRGRVTVCVSSQIGCAMNCQFCFTAKMGLRGNLSTAQIVEQ 212
Query: 252 AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL 311
V A R++S ++G +TNVVFMGMGEPLHN+++VI+AA IMV+++GLH SPRKVT+STSGL
Sbjct: 213 LVVASRIVSKDLGHVTNVVFMGMGEPLHNIDSVIRAAEIMVNDKGLHLSPRKVTISTSGL 272
Query: 312 VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL-HFKNNYKVL 370
VPQ+++F S CALAVSLNATTD++R+ IMPINRKY + L++ ++EE+ + V
Sbjct: 273 VPQIRKFCRSSECALAVSLNATTDDIRDQIMPINRKYNIRTLLDCVKEEMITHRPGESVF 332
Query: 371 FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 430
EYVML VNDS +DA RLI LV+ IPCKINLI FN H GS F PT +++ FR+ +A
Sbjct: 333 LEYVMLKNVNDSEEDATRLIELVKDIPCKINLIMFNSHPGSAFEPTPLVEVLRFRDRVAD 392
Query: 431 AGCTVFLRLSRGDDQMAACGQLG 453
AG V +R SRGDD+ ACGQLG
Sbjct: 393 AGLVVHIRNSRGDDEKMACGQLG 415
>gi|449020005|dbj|BAM83407.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 478
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 189/369 (51%), Positives = 256/369 (69%), Gaps = 10/369 (2%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
L GM+ EL+ +V +P +A L+K LY + A D++ L K F++ L+ A
Sbjct: 102 LSGMTLKELENFVSGMGEKPYRARQLYKWLYRPPV-ASQVDDMTDLGKLFREALASSARL 160
Query: 176 RALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
ALSL+++ + DGTRK+++ +D +E+V+IP + GR T+C+SSQ+GCAMNCQFC+
Sbjct: 161 HALSLREVREAQDGTRKLVYQVDGDSPGAVESVLIPAS-GRNTLCISSQLGCAMNCQFCF 219
Query: 234 TGRMGLKRHLTAAEIVEQAVFAR-RLLSSEVGS--ITNVVFMGMGEPLHNVENVIKAANI 290
TG+MGL+R+LTAAEIV+Q + R S S I+N+VFMGMGEP N++NV++A I
Sbjct: 220 TGKMGLQRNLTAAEIVDQVTLTKARYESPRQASTQISNIVFMGMGEPFQNLDNVLRALEI 279
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350
++ + + S RKVTVSTSGLVP+++++L E++ LAVSLNATT+EVRNWIMPINRKY L
Sbjct: 280 LLDPKAMGLSHRKVTVSTSGLVPEIRRYLRETSANLAVSLNATTNEVRNWIMPINRKYPL 339
Query: 351 GLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 408
+L+ETLREE + KV FEYV+L GVNDS DDAKRL+ L+ IPCK+NLI FN H
Sbjct: 340 EVLLETLREEYARDARRGDKVFFEYVLLGGVNDSLDDAKRLLRLIAHIPCKVNLIPFNSH 399
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQA-PLLRVPE 467
GS+F P+ +M FR L G V LR SRGDD+MAACGQLGNPG + P +RVP+
Sbjct: 400 AGSEFRPSPLPQMEAFRQYLHERGVLVTLRRSRGDDKMAACGQLGNPGIGRTPPRMRVPD 459
Query: 468 KFQTAINAS 476
FQ + +
Sbjct: 460 AFQKVLGTA 468
>gi|384245068|gb|EIE18564.1| hypothetical protein COCSUDRAFT_60231 [Coccomyxa subellipsoidea
C-169]
Length = 399
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 192/399 (48%), Positives = 257/399 (64%), Gaps = 37/399 (9%)
Query: 115 LLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDEL----EGLNKDFKKMLS 170
+LK +++ EL+QW S RP +A LW+ +Y D W D+ +GL+ F++
Sbjct: 1 MLKSLTYGELEQWCMSVGERPQRARQLWRWMYYDGNWVRSLDDTADMQDGLSASFREQWR 60
Query: 171 EHAEFRA-LSLKDILTSSDGTRKILFMLDD-----GLVIETVVIP-----CNRGRTTVCV 219
E LSL+ + T++DGTRK++F L D G +E V+IP +R RTT+CV
Sbjct: 61 EKITVDGDLSLRSVHTAADGTRKMVFDLQDSTEAAGAGVEAVIIPVERPGASRPRTTLCV 120
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--------------VGS 265
SSQVGCA NCQFC+TGRMGL+ L+AA+IVEQ V ARR ++ +
Sbjct: 121 SSQVGCAQNCQFCFTGRMGLRAQLSAAQIVEQVVEARRHVADHNQRVAAGECSGAAPIAP 180
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
I+N+VFMGMGEPLHN E VI A ++ H QGL FSP KVTVST GLVPQ++Q S
Sbjct: 181 ISNIVFMGMGEPLHNAEAVITALEVLCHPQGLQFSPNKVTVSTVGLVPQMRQLALTSAVQ 240
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE------ELHFKNNYKVLFEYVMLAGV 379
LAVSL+ATTDEVRNWI+P+NR+Y L +L+ L E EL + VLFEYVML GV
Sbjct: 241 LAVSLHATTDEVRNWIVPLNRRYPLAVLMGALEELYPRNAELRPRAGRHVLFEYVMLRGV 300
Query: 380 NDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
ND+ +DA+RL+ L I CK+NLI FNPH G+ F +T E+++EF+ +L AG +R
Sbjct: 301 NDTLEDAERLVRLTAAIECKVNLILFNPHAGTPFRASTQEQVLEFQAVLKAAGLVCTVRD 360
Query: 440 SRGDDQMAACGQLGNPGAIQ--APLLRVPEKFQTAINAS 476
SRGDD+MAACGQLGN + AP+L+ P++F+ A+ A+
Sbjct: 361 SRGDDEMAACGQLGNIDELNRLAPMLKPPQQFRDALVAA 399
>gi|449529008|ref|XP_004171493.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like,
partial [Cucumis sativus]
Length = 205
Score = 363 bits (933), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 171/201 (85%), Positives = 185/201 (92%)
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPLHN++NVIKA NIMVHEQGLHFSPRKVTVSTSGLVPQLK+FLNE NCALAVSLNA
Sbjct: 1 GMGEPLHNIDNVIKAVNIMVHEQGLHFSPRKVTVSTSGLVPQLKRFLNECNCALAVSLNA 60
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
TTDEVRNWIMPINRKYKLGLL++TLREEL K+ YKVLFEYVMLAGVNDS +DAKR++ L
Sbjct: 61 TTDEVRNWIMPINRKYKLGLLLQTLREELRRKHKYKVLFEYVMLAGVNDSIEDAKRIVDL 120
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
VQGIPCKINLISFNPHCGSQF PT EKMI FRN+LA AG TVFLRLSRGDDQMAACGQL
Sbjct: 121 VQGIPCKINLISFNPHCGSQFRPTCKEKMIGFRNVLAEAGLTVFLRLSRGDDQMAACGQL 180
Query: 453 GNPGAIQAPLLRVPEKFQTAI 473
G PG +QAPLLRVP++FQ A+
Sbjct: 181 GKPGIVQAPLLRVPDRFQMAM 201
>gi|303272039|ref|XP_003055381.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463355|gb|EEH60633.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 430
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 173/372 (46%), Positives = 257/372 (69%), Gaps = 13/372 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
++V LKGM + +L++W+ +P +A ++ +Y ++ ++ F++ L+
Sbjct: 52 AKVSLKGMRYADLERWLAEIGEKPSRATQVFNWMYRPGKLVADVRDMADVSAAFREKLAS 111
Query: 172 HAEFRA-LSLKDILTSSDGTRKILFML-DDGLVIETVVIPCN--RGRTTVCVSSQVGCAM 227
A L ++D+ TS+DGT+K+ + L + G V+E+V+IP N GRTTVCVSSQ+GCAM
Sbjct: 112 LATVDGDLEMRDVRTSADGTKKVTYALANGGGVVESVIIPSNVPGGRTTVCVSSQLGCAM 171
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKA 287
NCQFC+T +MGL+R+LTAA+IVEQ V ARRL ++ + +NVVFMGMGEPLHN++ V+ A
Sbjct: 172 NCQFCFTAKMGLRRNLTAAQIVEQVVHARRLAEADDEASSNVVFMGMGEPLHNIDAVLAA 231
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
++++ ++GL FS KVTVSTSGLVP+++++L ES +LAVSLNATTDE+R+WIMPINRK
Sbjct: 232 VDVLLDDRGLGFSKNKVTVSTSGLVPEIERYLAESQGSLAVSLNATTDEIRSWIMPINRK 291
Query: 348 YKLGLLIETLREELHFKN----NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
Y L L+ LR ++ +V FEY+ML GVNDS +DA RL+ + + +PCK NLI
Sbjct: 292 YNLERLLGALRANFPRRDGGRHQREVFFEYIMLEGVNDSAEDADRLVAIARTLPCKFNLI 351
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ---- 459
FN H GS+F + E ++ FR+ + AG T +R SRGD++ AACGQLG+P A++
Sbjct: 352 YFNTHDGSEFRCSDRETILAFRDRVVAAGVTCTIRQSRGDEEAAACGQLGSPDAMEDWKP 411
Query: 460 -APLLRVPEKFQ 470
P ++ P++ +
Sbjct: 412 SPPRMKRPKRLR 423
>gi|308810124|ref|XP_003082371.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri]
gi|116060839|emb|CAL57317.1| from E. coli sequence gb|U02965. (ISS) [Ostreococcus tauri]
Length = 602
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 180/356 (50%), Positives = 243/356 (68%), Gaps = 16/356 (4%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEG---LNKDFKKML 169
R LKGM +EL +W+ + R +A L+ +Y D + EG + F L
Sbjct: 82 RAQLKGMRRSELARWLEATGERATRADGLFATMYRD----LSMNAFEGDGRFGEKFASRL 137
Query: 170 SEHAEFRA-LSLKDILTSSDGTRKILFML--DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
A L L ++ +SDGTRK+ + L D G ++E+V+IP R RTTVCVSSQ+GCA
Sbjct: 138 ERVATMDGDLRLGEVRRASDGTRKVTYALADDSGGIVESVLIPSGR-RTTVCVSSQLGCA 196
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286
MNCQFC+T MGL+++L+AA+IVEQ V ARR+ E ++NVVFMGMGEPLHN++ V+K
Sbjct: 197 MNCQFCFTATMGLRKNLSAAQIVEQVVRARRMCD-EGEEVSNVVFMGMGEPLHNIDEVLK 255
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
A +I++ +GL FS KVTVSTSGLVPQ+++FL ES +LAVSLNATTD +RNWIMPINR
Sbjct: 256 AVDILLDPRGLAFSRNKVTVSTSGLVPQMERFLTESEASLAVSLNATTDYIRNWIMPINR 315
Query: 347 KYKLGLLIETLREELHF----KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
KY L L+ LR E ++ +V FEY+MLAGVNDS +DA RLI + + +PCKINL
Sbjct: 316 KYNLDSLLGLLRREFPRTDLGRHQRQVFFEYIMLAGVNDSDEDADRLIEIAKSLPCKINL 375
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 458
I FN H G++F + E++ FR ++ AG T +R+SRGD++M+ACGQLG+PG +
Sbjct: 376 IYFNTHDGAEFKCSDQERIAAFRQRVSDAGVTCTIRVSRGDEEMSACGQLGSPGDV 431
>gi|424513649|emb|CCO66271.1| radical SAM enzyme, Cfr family [Bathycoccus prasinos]
Length = 471
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 181/406 (44%), Positives = 246/406 (60%), Gaps = 64/406 (15%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY-----------------GDD--- 149
K ++ LK M+ E++ W+ S +P + L + +Y DD
Sbjct: 49 KPDKIALKSMTRDEMKDWLVSIDEKPSRVEQLIESMYRRRQLSPTKAAAGEEEKDDDGNS 108
Query: 150 -IWAHCTDELEGLNKD----FKKMLSEHAEFRA-LSLKDILTSSDGTRKILFMLDDGLVI 203
+ +C D +E ++ + F+ + E A F L+L I + DGTRK+ + L DG ++
Sbjct: 109 SVSNYCND-VEDMSSEISAKFRAKMHELASFGGDLTLDSINVAKDGTRKVTYALSDGGIV 167
Query: 204 ETVVIP---------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
E+V+IP +GRTTVCVSSQ+GCAMNCQFC+T +MGL+++L A +IV+Q V
Sbjct: 168 ESVIIPPLPGEAEEDGKKGRTTVCVSSQLGCAMNCQFCFTAKMGLRKNLNANQIVQQVVN 227
Query: 255 ARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQ 314
AR + +V TNVVFMGMGEPLHN ENV+KA IM +GL+FS +VTVSTSGL+P
Sbjct: 228 ARDIAGEDV---TNVVFMGMGEPLHNTENVLKAVKIMTDPKGLNFSKNRVTVSTSGLIPG 284
Query: 315 LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL------------- 361
+++FL+ES+C LAVSLNATT+E+RNWIMPINRKY L L+ +RE
Sbjct: 285 IERFLDESDCMLAVSLNATTNEIRNWIMPINRKYPLEDLLGVIRERFSNNSSGGGGGSSS 344
Query: 362 ------------HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
+ +V FEY+MLA VNDSF+DA R+I + + IPCKINLI FN H
Sbjct: 345 SSSSSSSDERAKRSRRQQRVFFEYIMLANVNDSFEDADRIIEISKTIPCKINLIYFNTHD 404
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNP 455
GS+FT + E ++ FRN L G +R SRGD++MAACGQLG P
Sbjct: 405 GSEFTCSNQEHILAFRNYLLENGVLATIRKSRGDEEMAACGQLGKP 450
>gi|302851668|ref|XP_002957357.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f.
nagariensis]
gi|300257316|gb|EFJ41566.1| hypothetical protein VOLCADRAFT_42666 [Volvox carteri f.
nagariensis]
Length = 307
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 160/307 (52%), Positives = 210/307 (68%), Gaps = 14/307 (4%)
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLV----IETVVIPCNR-----GRTTVCVSSQVGCAM 227
L L + ++DGTRK++F L +G +ETV+IP R R T+CVSSQVGCAM
Sbjct: 2 GLRLSQVARAADGTRKLVFTLTEGEAAGGSVETVLIPIVRQQGLRDRLTICVSSQVGCAM 61
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGSITNVVFMGMGEPLHNVENVI 285
NCQFCYTGRMGL +LT A+IVEQ V ARR L+ E +TN+VFMGMGEPLHN E V+
Sbjct: 62 NCQFCYTGRMGLLGNLTTAQIVEQVVEARRFLAQEGERTQLTNLVFMGMGEPLHNTEAVL 121
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
AA+I+ H GLH S KVT+ST GLVP+++ + S +A+SL+ATTDEVR+WI+P+N
Sbjct: 122 AAADIVSHYLGLHISHNKVTISTVGLVPEMRSVVARSRVQMALSLHATTDEVRDWIVPVN 181
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
R+Y L L L EEL ++ +L EY ML G+ND+ DA RL+ ++ + CK+NLI F
Sbjct: 182 RRYDLATLTAAL-EELGNSSSRSLLIEYTMLHGINDTLQDAHRLVAMLARVNCKVNLIMF 240
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI--QAPLL 463
NPH G++F P+T+E + FR+ L AG +R SRGDD+MAACGQLGN G +P+L
Sbjct: 241 NPHAGTRFQPSTEEAVTAFRSALVQAGMVCTIRDSRGDDEMAACGQLGNVGLAFRPSPIL 300
Query: 464 RVPEKFQ 470
PE F+
Sbjct: 301 EPPEHFR 307
>gi|159487459|ref|XP_001701740.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii]
gi|158280959|gb|EDP06715.1| predicted Fe-S-cluster redox enzyme [Chlamydomonas reinhardtii]
Length = 502
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 229/401 (57%), Gaps = 55/401 (13%)
Query: 113 RVLLKGMSFTELQQW--VRSHAFRPGQALMLWKRLYGD---DIWAHCTDELEGLNKDFKK 167
R++LK ++ EL+ W + A +AL +W+ +Y D W +E G F
Sbjct: 92 RLVLKALTLPELEAWCAAQGEAAPANRALQIWRWMYADPPAGSWVRSLEETMGRQNGFAA 151
Query: 168 MLSE----HAEFRA-LSLKDILTSSDGTRKILFMLDDGLV----IETVVIPCNRGRTTVC 218
E H L L ++ +SDGTRK++F L G IETV+IP
Sbjct: 152 KFVEKVGPHVSLEGGLKLSQVVRASDGTRKLVFTLLGGEAAGGSIETVLIPV-------- 203
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG--SITNVVFMGMGE 276
VGCAMNCQFCYTGRMGL +L+ A+IVEQ V ARR L+ E +TN+VFMGMGE
Sbjct: 204 ----VGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRFLAQEGDRTPLTNLVFMGMGE 259
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PLHN E V+ AA+I+ H GLH S K+T+ST GLVP+++ L + +A+SL+ATTDE
Sbjct: 260 PLHNTEAVLAAADIVSHYLGLHISHNKITISTVGLVPEMRAVLARTRVQVALSLHATTDE 319
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKV-------------------------LF 371
VR+WI+P+NR+Y L L L E + + L
Sbjct: 320 VRDWIVPVNRRYDLATLTAALEEMFPKEEEAAIGSLSSSDEAAAAAAGKGSSKEGRSLLV 379
Query: 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431
EY ML G+ND+ DDA RL +++ + CK+NLI FNPH G++F P+TDE + FR+ L +
Sbjct: 380 EYTMLHGINDTLDDAHRLADMLRRVNCKVNLIVFNPHKGTRFQPSTDEDISAFRSALIRS 439
Query: 432 GCTVFLRLSRGDDQMAACGQLGNPGAI--QAPLLRVPEKFQ 470
G +R SRGDD+MAACGQLGN G +P+L PE+F+
Sbjct: 440 GMVCTIRDSRGDDEMAACGQLGNVGLSFRPSPILDAPERFR 480
>gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
Length = 345
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 161/340 (47%), Positives = 220/340 (64%), Gaps = 6/340 (1%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA 173
V +K ++ EL+++V S F P +A + + LY + + D++ L+K+ +K+LSE A
Sbjct: 2 VKVKDLTLPELKEFVTSLGFEPYRAKQIAQWLYKKRVSSF--DQMTNLSKEARKLLSEKA 59
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
+ L L + S DGTRK LF L+DG IE+V IP + T+CVS+QVGC C+FC
Sbjct: 60 QIDLLKLVKVEESKDGTRKYLFELEDGSRIESVFIP-EKDWNTLCVSTQVGCPAGCRFCL 118
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
T + G R+LTA EIV+Q + +R + E I+NVVFMGMGEPL N +NV KA IM H
Sbjct: 119 TAKDGFTRNLTAGEIVDQYIQVQRDVG-ENRRISNVVFMGMGEPLLNFDNVKKAVEIMTH 177
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESN-CALAVSLNATTDEVRNWIMPINRKYKLGL 352
L S RKVTVST G+VP + + E N LAVSL+ATTDEVRN ++P+NRKY +G
Sbjct: 178 RDMLDLSTRKVTVSTVGIVPGIDRMAKEMNKVKLAVSLHATTDEVRNMLVPLNRKYPIGE 237
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
++ LR NN +++ EYVML GVNDS +DA+RL+ LV+GIP K+NLI FNP+ G++
Sbjct: 238 IMAALRR-YPADNNRRIMIEYVMLKGVNDSLEDARRLVKLVKGIPVKVNLIPFNPYPGAE 296
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F PT E++ F+ +L F+R SRG D AACG L
Sbjct: 297 FEPTPREQIEAFQKVLWDHNIAAFIRDSRGQDISAACGML 336
>gi|449522345|ref|XP_004168187.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like
[Cucumis sativus]
Length = 285
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 135/161 (83%), Positives = 152/161 (94%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
S++LLKG+S+TEL++WV++ +RPGQALMLWKRLYGD+IWAH DELEGLNKDFKKML E
Sbjct: 117 SKMLLKGLSYTELEKWVQAQGYRPGQALMLWKRLYGDNIWAHTGDELEGLNKDFKKMLIE 176
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
+AEFRALSL++IL S DGTRKILF L+DGL+IETVVIPC+RGRTTVCVSSQVGCAMNCQF
Sbjct: 177 NAEFRALSLREILPSCDGTRKILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQF 236
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 272
CYTGRMGLKRHLTAAEIVEQAVFARRLL+SEVG ITNVVFM
Sbjct: 237 CYTGRMGLKRHLTAAEIVEQAVFARRLLTSEVGLITNVVFM 277
>gi|39996213|ref|NP_952164.1| ribosomal RNA large subunit methyltransferase N [Geobacter
sulfurreducens PCA]
gi|409911654|ref|YP_006890119.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
sulfurreducens KN400]
gi|81702805|sp|Q74E53.1|RLMN_GEOSL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|39982978|gb|AAR34437.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|307634805|gb|ADI83948.2| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 360
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 159/339 (46%), Positives = 210/339 (61%), Gaps = 13/339 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHA 173
+KG+S EL++++ +A ++K LY G +A TD L K+ ++ L E A
Sbjct: 7 IKGLSIDELERFLLGKGKERYRARQIFKWLYQRGATSFAEMTD----LAKELRRDLEETA 62
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
LS + + S DGTRK LF LDDG +E+V+IP R T+C+SSQVGCAM C+FC
Sbjct: 63 RISTLSPEALEISRDGTRKYLFRLDDGCSVESVLIP-EEDRNTLCISSQVGCAMACEFCL 121
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
TG L R+LT AEIV Q +R + + N+VFMGMGEPL N++NVI+A IM+H
Sbjct: 122 TGTFRLTRNLTTAEIVNQVCAVQRDVP-----VRNIVFMGMGEPLANLDNVIRALQIMLH 176
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353
+ GL FS R++TVST+GLVP++++ LAVSLNATTDE+R+ IMPINRKY L +L
Sbjct: 177 DDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVL 236
Query: 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 413
++ R K+ EYV+L GVND+ DDAKRL+ L+ IP KINLI FN H G F
Sbjct: 237 LDACR-RFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPFNEHEGCSF 295
Query: 414 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ + + F L TV R SRG D AACGQL
Sbjct: 296 RSPSQDAIDRFHRYLLDKHFTVITRSSRGADISAACGQL 334
>gi|159483801|ref|XP_001699949.1| hypothetical protein CHLREDRAFT_97359 [Chlamydomonas reinhardtii]
gi|158281891|gb|EDP07645.1| predicted protein [Chlamydomonas reinhardtii]
Length = 368
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 165/379 (43%), Positives = 221/379 (58%), Gaps = 35/379 (9%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
RV+LK + EL++W S P +A L++ LYG+ W D+ + F
Sbjct: 1 RVMLKNLPLPELEEWCASVGEPPKRAKQLYRWLYGNRKWIRNLDQADSDASAFSGAFKAK 60
Query: 173 AEFRALSLKDILTSSDGTRKILFML------DDGLV------IETVVIP-CNRG----RT 215
L L+ + T+ DGTRK++F L DG +ETV+IP NR R
Sbjct: 61 VLAGGLQLQSVHTARDGTRKLVFALVGDWEGGDGPAGSARGTVETVLIPMTNRQGQNLRY 120
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI--TNVVFMG 273
T C+S+QVGCAMNCQFCYTGRMGL +L+ A+IVEQ V ARR L+ + I N+VFMG
Sbjct: 121 TACLSTQVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRYLAEQEVQIPIANIVFMG 180
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPLHN + V+ A I+ GL S K+ VST GLVP++++F+ LAV
Sbjct: 181 MGEPLHNYDAVMSAIEILA--TGLELSRNKIIVSTVGLVPEMRRFIASGRAKLAV----- 233
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHF---KNNYKVLFEYVMLAGVNDSFDDAKRLI 390
R+WI+P NR+Y L L+ LRE + K + V+ EYV+LAGVND+ DA+RL+
Sbjct: 234 ----RDWIVPTNRRYPLDQLLGALREAFPYGKRKGDDFVVIEYVLLAGVNDTLADAERLL 289
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L I C +NLI FNPH G+QF ++D+ + FR + AG +R S+GDD+MAACG
Sbjct: 290 ALTSDIYCLVNLIVFNPHDGTQFKRSSDDDVRAFRAVFLAAGRPCTVRASKGDDEMAACG 349
Query: 451 QLG--NPGAIQAPLLRVPE 467
QLG N AP+LR PE
Sbjct: 350 QLGDVNLSPRPAPMLRPPE 368
>gi|404493665|ref|YP_006717771.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
carbinolicus DSM 2380]
gi|123729427|sp|Q3A2Z4.1|RLMN_PELCD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77545701|gb|ABA89263.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Pelobacter
carbinolicus DSM 2380]
Length = 371
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 218/363 (60%), Gaps = 18/363 (4%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVR---SHAFRPGQALM-LWKRLYGDDIWAHCTDELE 159
++V + +R+ LK + EL +++ FR GQ + ++ RL D D +
Sbjct: 1 MDVSMDQDTRIDLKNFTLEELTEFLAGMGKERFRAGQVMRWMYHRLVDD------FDAMS 54
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
L+K + L + A L+ + S DGTRK LF L+DG IE+V IP + R T+C+
Sbjct: 55 DLSKVLRAELHQRARISRLTPEATEDSRDGTRKYLFRLEDGETIESVRIPMDDNRATLCI 114
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH 279
S+QVGCAM C FC+TG GL R+LT EIV Q A L+ G + N+V MGMGEPLH
Sbjct: 115 STQVGCAMGCVFCHTGSFGLVRNLTPGEIVNQVCAA---LAD--GPVNNIVLMGMGEPLH 169
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N++NV+KA I+ QGL +SPRKVT+ST+GLVPQ+++ LAVSLNATTDEVRN
Sbjct: 170 NLDNVVKALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLAVSLNATTDEVRN 229
Query: 340 WIMPINRKYKLGLLIETLRE-ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
+MP+N++Y L L+ R+ LH K ++ FEY+++ VNDS DA+RL+ L+ GI
Sbjct: 230 RLMPVNQRYPLQQLMAACRQYPLHAKK--RITFEYILIRDVNDSDQDARRLVKLLHGIKA 287
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 458
K+N+I FN H S+F T+E++ F+ L G R S+G D AACGQL +
Sbjct: 288 KVNIIPFNEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDISAACGQLKGKLTV 347
Query: 459 QAP 461
P
Sbjct: 348 SPP 350
>gi|189426654|ref|YP_001953831.1| ribosomal RNA large subunit methyltransferase N [Geobacter lovleyi
SZ]
gi|189422913|gb|ACD97311.1| radical SAM enzyme, Cfr family [Geobacter lovleyi SZ]
Length = 351
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 206/340 (60%), Gaps = 9/340 (2%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
R LK ++ L+Q+++ +A ++K LY D+ + DE+ ++K + L
Sbjct: 6 RTDLKNLTLPALEQFLQGQGKERYRATQIFKWLYQHDVSSF--DEMTNVSKALRAELVRT 63
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A L + + SDGTRK LFML+DG +E+V+IP + R T+C+SSQ GCAM C FC
Sbjct: 64 ACISRLEPETVEVGSDGTRKYLFMLEDGNAVESVIIP-DEDRNTLCISSQAGCAMQCAFC 122
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
TG L R+LT AEIV Q + +R + + N+V MGMGEPLHN++NVI A IM
Sbjct: 123 LTGTFSLTRNLTTAEIVNQILAVQRDVE-----VRNIVMMGMGEPLHNLDNVIPALQIMA 177
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
+ GL S R+VTVST GLVP+L++ E LAVSLNATTDE+R+ IMP+N+ Y +
Sbjct: 178 EDNGLQLSSRRVTVSTCGLVPELERLGREVTVNLAVSLNATTDELRDRIMPVNKAYPIAT 237
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
L+ L+ K+ EYV+L G+ND+ +DAKRL+ L+ IPCKINLI FNPH G+
Sbjct: 238 LLAALK-NYPLPGRRKITIEYVLLGGLNDTPEDAKRLVRLLSDIPCKINLIPFNPHEGAD 296
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F P + + F L TV R SRG D AACGQL
Sbjct: 297 FRPPSRAALDAFHKYLLDRHFTVITRDSRGSDISAACGQL 336
>gi|359491173|ref|XP_002275716.2| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Vitis vinifera]
Length = 240
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/159 (81%), Positives = 144/159 (90%)
Query: 315 LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 374
LK FL ESNCALAVSLNATT+EVRNW+MPINRKY L LL++TLREEL K+NYKVLFEYV
Sbjct: 81 LKHFLRESNCALAVSLNATTNEVRNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYV 140
Query: 375 MLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCT 434
MLAGVNDS +DA+RLI LVQGIPCK+NLISFNPHCGSQF PT++EK+IEFRNILA AGC
Sbjct: 141 MLAGVNDSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCI 200
Query: 435 VFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAI 473
VFLR SRGDDQMAACGQLG PG +QAPLL+VP KFQ+A+
Sbjct: 201 VFLRPSRGDDQMAACGQLGKPGQVQAPLLQVPAKFQSAL 239
>gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 345
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 217/340 (63%), Gaps = 6/340 (1%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA 173
V +K ++F ELQ +V+S F +A + + +Y + + DE+ ++K +K+LSE+A
Sbjct: 2 VEIKNLNFEELQNFVQSLGFENYRAKQIAQWIYKKRVKSF--DEMTNISKAARKVLSENA 59
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
+ L L + S DGT+K LF L+DG +E+V IP + T+CVS+QVGC + C+FC
Sbjct: 60 KIDVLKLVKVEKSMDGTKKYLFELEDGNRVESVFIP-EKDWNTLCVSTQVGCPVGCKFCL 118
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
T + G R+LTAAEIV+Q + +R + E I+NVVFMGMGEP N ENV KA IM
Sbjct: 119 TAKDGFTRNLTAAEIVDQYIHVQRDVG-EDKRISNVVFMGMGEPFLNFENVKKAVEIMTD 177
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESN-CALAVSLNATTDEVRNWIMPINRKYKLGL 352
+ L S RK+T+ST G+VP + + E N LA+SL+ATTDEVR I+P+NRKY +
Sbjct: 178 KNMLDLSTRKITISTVGVVPGIDRMAKEMNKVKLAISLHATTDEVREKIVPLNRKYPISE 237
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
++ LR N +++ EYVML GVNDS +DAKRL+ LV+GIP K+NLI FN + G+
Sbjct: 238 IMAALRR-YPADNIRRIMIEYVMLEGVNDSVEDAKRLVKLVKGIPVKVNLIPFNSYPGAP 296
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F P++ E+ +F+ +L F+R SRG D AACG L
Sbjct: 297 FKPSSKEQTEKFQKVLWDHNIAAFIRDSRGQDISAACGML 336
>gi|404497533|ref|YP_006721639.1| ribosomal RNA large subunit methyltransferase N [Geobacter
metallireducens GS-15]
gi|418065123|ref|ZP_12702498.1| radical SAM enzyme, Cfr family [Geobacter metallireducens RCH3]
gi|123742801|sp|Q39S71.1|RLMN_GEOMG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78195136|gb|ABB32903.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373562755|gb|EHP88962.1| radical SAM enzyme, Cfr family [Geobacter metallireducens RCH3]
Length = 346
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/340 (45%), Positives = 207/340 (60%), Gaps = 9/340 (2%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
++ +K ++ +L ++ +A ++K LY D A E+ L KD ++ L E
Sbjct: 5 KIDIKNLTLDDLIAFLAGKGKERYRARQIFKWLYQKD--ARSFAEMTDLAKDLRRDLEET 62
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A L + + S DGTRK LF L+DG +E+V+IP RTT+C+SSQVGCAM C+FC
Sbjct: 63 AVISDLEPEAMEVSRDGTRKYLFRLEDGNTVESVLIP-EEDRTTLCISSQVGCAMACEFC 121
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
TG L R+LTA EIV Q RR + + N+VFMGMGEPL N++NV+KA I++
Sbjct: 122 LTGTFRLTRNLTAGEIVNQICAVRRDVP-----VRNIVFMGMGEPLANLDNVVKALKIIL 176
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
H+ GL FS R+VTVSTSGLVP++++ E LAVSLNATTDEVR+ IMP+NR+Y L L
Sbjct: 177 HDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLRL 236
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
L++ R K+ EYVM+ G+NDS +DAKRL+ L+ I KINLI FN H G
Sbjct: 237 LLDACR-SYPLPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDGCS 295
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F + F + L TV R SRG D AACGQL
Sbjct: 296 FKSPDQGAIDVFHSYLLSKHFTVITRSSRGSDISAACGQL 335
>gi|145352684|ref|XP_001420668.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580903|gb|ABO98961.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 254
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 134/233 (57%), Positives = 176/233 (75%), Gaps = 6/233 (2%)
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286
MNCQFCYT +MGL+++L+AA+IVEQ V ARR++ + ++NVVFMGMGEPLHNV+ V+K
Sbjct: 1 MNCQFCYTAKMGLRKNLSAAQIVEQVVQARRMVGA--SEVSNVVFMGMGEPLHNVDEVLK 58
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
A +I++ +GL FS KVTVSTSGLVPQ+++FL ES +LAVSLNATTD +RNWIMPINR
Sbjct: 59 AVSILLDPKGLGFSRNKVTVSTSGLVPQMERFLRESEASLAVSLNATTDYIRNWIMPINR 118
Query: 347 KYKLGLLIETLREELHF----KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
KY L +L+ LR E ++ +V FEY+ML GVNDS +DA RL+ + + IPCKINL
Sbjct: 119 KYNLEMLLGLLRREFPRQSLGRHQRQVFFEYIMLEGVNDSDEDADRLVEIARDIPCKINL 178
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNP 455
I FN H GS+F + E++ FR ++ AG T +R SRGD++M+ACGQLG P
Sbjct: 179 IYFNTHDGSEFKCSDQERINAFRQRVSDAGVTCTIRQSRGDEEMSACGQLGKP 231
>gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
Length = 371
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/357 (43%), Positives = 221/357 (61%), Gaps = 14/357 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEG 160
+NV KK LK ++ +L ++V S AFR G+ ++ W G + TD
Sbjct: 1 MNVAAKKTD---LKNLTQEQLVRFVESLGQPAFR-GRQILAWIYRPGIIDFTQMTD---- 52
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
L K+F+ +L++ A + S DG K F LDDG +IE+V+IP R T+CVS
Sbjct: 53 LAKEFRAILTQSAFMSRFDDCMVECSRDGAVKFAFRLDDGQIIESVLIP-EEDRNTLCVS 111
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR-LLSSEVGSITNVVFMGMGEPLH 279
SQVGCAM C FC TG MG R+LT AEIV Q R L+ + G +TN+VFMGMGEPL
Sbjct: 112 SQVGCAMGCSFCLTGAMGFCRNLTTAEIVNQVCAVRDWTLAHDKGLLTNIVFMGMGEPLA 171
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N +N++ A I+ ++GL FS R++TVST GLVPQ+++ E++ LAVSL+A DEVR+
Sbjct: 172 NFDNLLDAIAILTEQRGLDFSNRRITVSTCGLVPQMRRLGEETDVNLAVSLHAVNDEVRS 231
Query: 340 WIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
+MP+N++Y + LIE R K +++FEY +L G+NDS DA +L L++ +PCK
Sbjct: 232 RLMPVNKRYPIAELIEVCRTYRQ-KRRKRIMFEYTLLQGINDSDADAVQLAELLREVPCK 290
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
INL++ NP GS + +E+++ F+ IL G TVF+R SRG+D AACGQL G
Sbjct: 291 INLLAVNPGSGSAYQSPGEERVLCFQRILRDRGYTVFIRTSRGEDISAACGQLAGKG 347
>gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|205829911|sp|A0LQM1.1|RLMN_SYNFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 342
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 217/341 (63%), Gaps = 9/341 (2%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDI--WAHCTDELEGLNKDFKKMLSE 171
V +K + EL++WV+ R +A L++ +YG + W+ C+D L++ F+ L
Sbjct: 4 VCVKDFTLPELEEWVQGIGERSFRARQLFRHVYGRGVRSWSECSD----LSRMFRVQLEH 59
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
E ALS+ + DGT K LF L DG IE V+IP + R+T+CVSSQVGCA+ C+F
Sbjct: 60 GVELDALSVLKKEQADDGTSKYLFGLRDGHSIEAVLIP-DLPRSTLCVSSQVGCALGCKF 118
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIM 291
C TG +G KR+L+AAEIV+Q +R L S ITN+VFMGMGEPL N+++V++A ++
Sbjct: 119 CLTGSLGFKRNLSAAEIVDQVCQVQRDLGSR-SRITNIVFMGMGEPLANLDSVLRAIRVI 177
Query: 292 VHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 351
G+ FS R++T+ST+GLVPQL++ ES LAVSL+A +E+R +MP+NR Y L
Sbjct: 178 AEPNGMAFSHRRITLSTAGLVPQLRRLGRESPVNLAVSLHAAENELRAELMPVNRTYPLE 237
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
+L+ R E ++ FEY++L G+ND AK+L+ L+ GI K+NL+ FNPH GS
Sbjct: 238 VLMAACR-EYPLPPRKRITFEYILLDGINDDPKQAKQLVKLLHGIRAKVNLMPFNPHPGS 296
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F ++++++ F+ L A T +R SRG + AACGQL
Sbjct: 297 VFRKPSEQRVLAFQEALQNARITTHVRRSRGGEIGAACGQL 337
>gi|148263644|ref|YP_001230350.1| ribosomal RNA large subunit methyltransferase N [Geobacter
uraniireducens Rf4]
gi|205829769|sp|A5GEC2.1|RLMN_GEOUR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146397144|gb|ABQ25777.1| 23S rRNA m(2)A-2503 methyltransferase [Geobacter uraniireducens
Rf4]
Length = 343
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 203/340 (59%), Gaps = 9/340 (2%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
+V +K + EL+ ++ +A ++K LY D A ++ L+KDF++ L +
Sbjct: 3 KVDIKNFTLQELEAYIAGQGKERFRAKQIFKWLYQQD--AREFADMTNLSKDFRQELEKT 60
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A L + + S+DGT+K LF L DG +E+V+IP + RTT+C+SSQVGCAM C+FC
Sbjct: 61 AWISNLDAEAVEASADGTKKYLFRLADGNAVESVLIP-DEDRTTLCISSQVGCAMGCEFC 119
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
TG L R+LT AEIV Q +R + N+VFMGMGEPL N++NV+ A I+
Sbjct: 120 LTGTFKLTRNLTTAEIVNQVCAVKRQ-----EPVRNIVFMGMGEPLANLKNVVGALKILT 174
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
G FS RKVTVSTSGLVP++ + LAVSLNATTDEVR+ IMPINR+Y L
Sbjct: 175 DPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSLNATTDEVRDRIMPINRRYPLKE 234
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
L+ + + + EYVM+ GVNDS DDAKRL+ L+ IP K+NLI FN H G
Sbjct: 235 LLAACK-AFPLPSRRWITIEYVMIRGVNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCT 293
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F T + + +F L TV R SRG D AACGQL
Sbjct: 294 FQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACGQL 333
>gi|322419007|ref|YP_004198230.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
gi|320125394|gb|ADW12954.1| radical SAM enzyme, Cfr family [Geobacter sp. M18]
Length = 344
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 199/337 (59%), Gaps = 9/337 (2%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
+K ++ L+ ++ +A ++K LY D A DE+ ++K+F+ +L E AE
Sbjct: 6 IKNLTLQGLEAFIAGLGKERFRAKQIFKWLYQMD--ATDFDEMTNVSKEFRAVLKERAEI 63
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 235
LS + + S DGTRK LF L DG +E+V+IP + GR T+C+SSQVGCAM C FC TG
Sbjct: 64 GDLSPEAVEASEDGTRKYLFRLKDGAAVESVLIP-DEGRNTLCISSQVGCAMKCAFCLTG 122
Query: 236 RMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
GL R+LT AEIV Q +R + N+VFMGMGEPLHN+ VI A I+
Sbjct: 123 SFGLSRNLTTAEIVNQVCAVKR-----EHPVNNIVFMGMGEPLHNLAAVIPAVQILTDPD 177
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 355
G S RKVTVSTSGLVP++ + LAVSLNATTDEVR+ IMPINR+Y L L+
Sbjct: 178 GFQLSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRDRIMPINRRYPLKELLA 237
Query: 356 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP 415
+ + + EYV++ +NDS DDAKRL+ L+ IP K+NLI FN H G F
Sbjct: 238 ACK-AFPLPSRRWITMEYVLIRDLNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCSFKS 296
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
T E + F L TV R SRG D AACGQL
Sbjct: 297 PTQETIDRFHKYLLDKHVTVITRSSRGGDISAACGQL 333
>gi|427430954|ref|ZP_18920650.1| Ribosomal RNA large subunit methyltransferase N [Caenispirillum
salinarum AK4]
gi|425878131|gb|EKV26850.1| Ribosomal RNA large subunit methyltransferase N [Caenispirillum
salinarum AK4]
Length = 421
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 159/384 (41%), Positives = 222/384 (57%), Gaps = 22/384 (5%)
Query: 89 ATIEDYCSDAGGGDNINVLPKKGSRVL-------------LKGMSFTELQQWVRSHAFRP 135
A + D ++A D I LP + S L G+S EL + +P
Sbjct: 16 AAVSDAQANAVSDDGIEKLPLQASDTAARAAVAADHGKRDLVGLSREELGAAMAELGEKP 75
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
+ +W+ +Y + D + L+K ++ L H R SL TS DGTRK L
Sbjct: 76 FRVKQVWQWIYNKGVTDF--DSMTNLSKPLREKLDAHFVIRRPSLPVEQTSEDGTRKWLM 133
Query: 196 MLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
DG ETV IP + R +VC+SSQVGC + C+FC+TG L R+L+AAEIV Q +
Sbjct: 134 RFADGKEAETVYIPDVDEPRGSVCISSQVGCTLTCKFCHTGTQLLVRNLSAAEIVSQFMV 193
Query: 255 ARRLL------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
AR + E ++N+V MGMGEPL+N +NV+KA I+V G+ S R++T+ST
Sbjct: 194 ARDSYGEWPSPTDESRRLSNIVMMGMGEPLYNYDNVVKALKILVDGDGIALSRRRITLST 253
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368
SG+VP++ + N+ N LAVSL+A TDE+RN IMPIN+KY L L++ RE + N +
Sbjct: 254 SGVVPEMYRLGNDINVNLAVSLHAATDEIRNRIMPINKKYPLAELMKACREYPNVSNARR 313
Query: 369 VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNIL 428
+ FEYVML VNDS DA+ L LV+GIPCK NLI FNP GSQF ++ ++ +F ++L
Sbjct: 314 ITFEYVMLKDVNDSDADARALAKLVEGIPCKFNLIPFNPWPGSQFECSSWNRIRKFSDLL 373
Query: 429 AGAGCTVFLRLSRGDDQMAACGQL 452
G + +R+ RG D +AACGQL
Sbjct: 374 YDLGFSAPIRMPRGRDILAACGQL 397
>gi|118578868|ref|YP_900118.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
propionicus DSM 2379]
gi|205829797|sp|A1AL40.1|RLMN_PELPD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118501578|gb|ABK98060.1| 23S rRNA m(2)A-2503 methyltransferase [Pelobacter propionicus DSM
2379]
Length = 347
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 159/348 (45%), Positives = 206/348 (59%), Gaps = 11/348 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
LK ++ L+Q++R +A ++K +Y D A E+ ++KD + L A
Sbjct: 7 LKNLTLPALEQFLRGQGKERFRATQVFKWIYQHD--ARSFQEMTNISKDLRAELEAKAYI 64
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 235
L + + DGTRK LF L+DG +E+V+IP + GR T+C+SSQVGCAM C FC TG
Sbjct: 65 SNLEPEAVEVGGDGTRKYLFGLEDGNSVESVLIP-DEGRNTLCISSQVGCAMGCAFCLTG 123
Query: 236 RMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
L R+LT AEIV Q + RR + I N+V MGMGEPLHN++NVI A +IM+
Sbjct: 124 TFRLTRNLTTAEIVNQIMAVRRDVE-----IRNIVMMGMGEPLHNLDNVIPAIHIMIDGN 178
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNE-SNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
GL S R+VTVST GL P++++ E N LAVSLNATTDE+R+ IMPINR+Y L L+
Sbjct: 179 GLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAVSLNATTDELRDRIMPINRRYPLKELL 238
Query: 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
RE KV FEYVML G+ND+ +DAKRL+ L IP K+NLI FN G +F
Sbjct: 239 SACRE-FPLPGRRKVTFEYVMLGGLNDTLEDAKRLLRLTSDIPNKVNLIPFNEFQGCEFR 297
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL-GNPGAIQAP 461
T + F L TV R SRG D AACGQL G A + P
Sbjct: 298 SPTRAAIDAFHKYLIDRHVTVITRDSRGSDISAACGQLKGKLDAARQP 345
>gi|400756278|ref|YP_006564646.1| ribosomal RNA large subunit methyltransferase N [Phaeobacter
gallaeciensis 2.10]
gi|398655431|gb|AFO89401.1| ribosomal RNA large subunit methyltransferase N [Phaeobacter
gallaeciensis 2.10]
Length = 394
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 220/367 (59%), Gaps = 21/367 (5%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCT 155
++ LP+K G ++ L G++ +L++ + +H QA M +W+ +Y W
Sbjct: 10 DVLTLPRKLPEGGKINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQ---WGKRD 66
Query: 156 -DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGR 214
E+ L K ++ L EH E + S+DGTRK L + G +E V IP GR
Sbjct: 67 FAEMTNLAKAYRADLDEHFEIATPEVMSKQVSTDGTRKYLVRIAGGHEVEVVYIP-EEGR 125
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SEVGS 265
T+C+SSQVGC + C FC+TG L R+LTAAEIV Q + AR L E
Sbjct: 126 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVPGAPKDETRL 185
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 186 LSNIVLMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCL 245
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LAVS +ATTDEVR+ ++PIN+++ + L+E LR N+ ++ FEYVML GVNDS +D
Sbjct: 246 LAVSFHATTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDED 305
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A RL+ L++GIP K+NLI FN GS +T +++ ++ F NI+ AG +R RG+D
Sbjct: 306 AHRLVELIKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDI 365
Query: 446 MAACGQL 452
+AACGQL
Sbjct: 366 LAACGQL 372
>gi|399994735|ref|YP_006574975.1| ribosomal RNA large subunit methyltransferase N [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398659290|gb|AFO93256.1| ribosomal RNA large subunit methyltransferase N [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 394
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 220/367 (59%), Gaps = 21/367 (5%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCT 155
++ LP+K G ++ L G++ +L++ + +H QA M +W+ +Y W
Sbjct: 10 DVLTLPRKLPEGGKINLVGLTRDQLRETLIAHGTPEKQAKMRVGQIWQWIYQ---WGKRD 66
Query: 156 -DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGR 214
E+ L K ++ L EH E + S+DGTRK L + G +E V IP GR
Sbjct: 67 FAEMTNLAKAYRADLDEHFEIATPEVVSKQVSTDGTRKYLVRIAGGHEVEVVYIP-EEGR 125
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SEVGS 265
T+C+SSQVGC + C FC+TG L R+LTAAEIV Q + AR L E
Sbjct: 126 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQIMMARDDLDEWPVPGAPKDETRL 185
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 186 LSNIVLMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCL 245
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LAVS +ATTDEVR+ ++PIN+++ + L+E LR N+ ++ FEYVML GVNDS +D
Sbjct: 246 LAVSFHATTDEVRDKLVPINKRWNIEALLEALRAYPRLTNSERITFEYVMLNGVNDSDED 305
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A RL+ L++GIP K+NLI FN GS +T +++ ++ F NI+ AG +R RG+D
Sbjct: 306 AHRLVELIKGIPAKVNLIPFNEWPGSPYTRSSNNRIHAFANIIYQAGYASPIRTPRGEDI 365
Query: 446 MAACGQL 452
+AACGQL
Sbjct: 366 LAACGQL 372
>gi|197118042|ref|YP_002138469.1| ribosomal RNA large subunit methyltransferase N [Geobacter
bemidjiensis Bem]
gi|197087402|gb|ACH38673.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 351
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 199/337 (59%), Gaps = 9/337 (2%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
+K ++ L+ ++ +A ++K LY D A +E+ ++K+F+ ML E A+
Sbjct: 6 IKNLTLQGLESYISGLGKERFRAKQIFKWLYQMD--AGSFEEMTNVSKEFRVMLGEIAQI 63
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 235
L+ + + S DGTRK LF L DG +E+V+IP + GR T+C+SSQVGCAM C FC TG
Sbjct: 64 SNLTPEVVEASEDGTRKYLFRLSDGSAVESVLIP-DEGRNTLCISSQVGCAMGCAFCLTG 122
Query: 236 RMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
GL R+LT AEIV Q +R + N+VFMGMGEPL N++ VI A I+
Sbjct: 123 SFGLSRNLTTAEIVNQVCAVKR-----DQPVNNIVFMGMGEPLANLKGVIPAVQILTDPD 177
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 355
G FS RKVTVSTSGLVP++ + LAVSLNATTDEVR+ IMP+NR Y L L+
Sbjct: 178 GFQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRSRIMPVNRTYPLAQLLA 237
Query: 356 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP 415
+ + + EYVM+ +NDS +DAKRL+ L+ IP K+NLI FN H G F
Sbjct: 238 ACK-AFPLPSRRWITMEYVMIRDLNDSLEDAKRLVRLISNIPSKVNLIPFNEHEGCDFKC 296
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
T E + F L TV R SRG D AACGQL
Sbjct: 297 PTQESIDRFHKYLLDKNVTVITRSSRGSDISAACGQL 333
>gi|253701168|ref|YP_003022357.1| ribosomal RNA large subunit methyltransferase N [Geobacter sp. M21]
gi|251776018|gb|ACT18599.1| radical SAM enzyme, Cfr family [Geobacter sp. M21]
Length = 351
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 200/337 (59%), Gaps = 9/337 (2%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
+K ++ L+ ++ +A ++K LY D A +E+ ++K+F+ ML E A+
Sbjct: 6 IKNLTLQGLESYISGLGKERFRAKQIFKWLYQLD--AGSFEEMTNVSKEFRSMLGEIAQI 63
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 235
L+ + + S DGTRK LF L DG +E+V+IP + GR T+C+SSQVGCAM C FC TG
Sbjct: 64 SNLTPEVVEASEDGTRKYLFRLFDGSAVESVLIP-DEGRNTLCISSQVGCAMGCAFCLTG 122
Query: 236 RMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
GL R+LT AEIV Q +R ++N+VFMGMGEPL N+ VI A I+
Sbjct: 123 SFGLSRNLTTAEIVNQVCAVKR-----DQPVSNIVFMGMGEPLANLNGVIPAVQILTDPD 177
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 355
G FS RKVTVSTSGLVP++ + LAVSLNATTDEVR+ IMP+NR+Y L L+
Sbjct: 178 GFQFSTRKVTVSTSGLVPEMAELGRGCTVNLAVSLNATTDEVRSRIMPVNRRYPLAELLA 237
Query: 356 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP 415
+ + + EYVM+ +NDS +DAKRL+ L+ IP K+NLI FN H G F
Sbjct: 238 ACK-AFPLPSRRWITMEYVMIRDLNDSLEDAKRLVRLISNIPSKVNLIPFNEHEGCDFKC 296
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
T E + F L TV R SRG D AACGQL
Sbjct: 297 PTQESIDRFHKYLLDKNVTVITRSSRGSDISAACGQL 333
>gi|77464959|ref|YP_354463.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1]
gi|126460828|ref|YP_001041942.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17029]
gi|221640880|ref|YP_002527142.1| radical SAM protein [Rhodobacter sphaeroides KD131]
gi|332559858|ref|ZP_08414180.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides
WS8N]
gi|429207530|ref|ZP_19198789.1| Ribosomal RNA large subunit methyltransferase N [Rhodobacter sp.
AKP1]
gi|123757738|sp|Q3IY22.1|RLMN_RHOS4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829867|sp|A3PFQ4.1|RLMN_RHOS1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807200|sp|B9KQP1.1|RLMN_RHOSK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77389377|gb|ABA80562.1| radical SAM superfamily protein [Rhodobacter sphaeroides 2.4.1]
gi|126102492|gb|ABN75170.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17029]
gi|221161661|gb|ACM02641.1| Radical SAM enzyme, Cfr family [Rhodobacter sphaeroides KD131]
gi|332277570|gb|EGJ22885.1| Radical SAM enzyme, Cfr family protein [Rhodobacter sphaeroides
WS8N]
gi|428189905|gb|EKX58458.1| Ribosomal RNA large subunit methyltransferase N [Rhodobacter sp.
AKP1]
Length = 392
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 224/372 (60%), Gaps = 31/372 (8%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWV-------RSHAFRPGQALMLWKRLYGDDIWA 152
++ LP+K G V + G++ EL + R R GQ W +G +A
Sbjct: 10 DVMTLPRKLPEGGPVNIVGLTREELLAALVAAGTPERQAKMRAGQVWQ-WVYHWGVRDFA 68
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP 209
T+ L KD++ +L+EH A+ L +++T S+DGTRK L + G +ETV IP
Sbjct: 69 QMTN----LAKDYRALLAEHF---AIVLPEVVTRQISADGTRKYLIRIAGGHEVETVYIP 121
Query: 210 CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------S 260
GR T+CVSSQVGC + C FC+TG L R+LTAAEIV Q + R L
Sbjct: 122 -EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQLMLVRDDLGEWPERGAPK 180
Query: 261 SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 320
E ++N+V MGMGEPL+N ENV A +++ +GL S R++T+STSG+VP++ +
Sbjct: 181 DETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAE 240
Query: 321 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 380
E C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML GVN
Sbjct: 241 EIGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGVN 300
Query: 381 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 440
D+ DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG +R
Sbjct: 301 DTDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTP 360
Query: 441 RGDDQMAACGQL 452
RG+D MAACGQL
Sbjct: 361 RGEDIMAACGQL 372
>gi|115377093|ref|ZP_01464309.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
gi|310821316|ref|YP_003953674.1| ribosomal RNA large subunit methyltransferase n 2 [Stigmatella
aurantiaca DW4/3-1]
gi|115365932|gb|EAU64951.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
gi|309394388|gb|ADO71847.1| Ribosomal RNA large subunit methyltransferase N 2 [Stigmatella
aurantiaca DW4/3-1]
Length = 381
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/337 (44%), Positives = 209/337 (62%), Gaps = 14/337 (4%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
L + + AFR GQ +++ L+ + + DE+ L+K ++ L E AE L +KD+
Sbjct: 37 LTEQLGERAFRAGQ---VYRWLHQRGVTSF--DEMTDLSKALRQKLKEQAEIVPL-VKDL 90
Query: 184 -LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
S DGT K F DG IE+V +P + R T+CVS+QVGCAM C FC TG +GLKR+
Sbjct: 91 EQVSIDGTIKYRFKTRDGRFIESVYMP-SEDRKTLCVSTQVGCAMKCSFCMTGTLGLKRN 149
Query: 243 LTAAEIVEQAVFARRLLSSEVG-----SITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
LT EIV Q R + + G ++N+VFMGMGEPLHN EN+ A +I+ + G
Sbjct: 150 LTPGEIVAQVHTVNREVRAREGLETYRPLSNLVFMGMGEPLHNFENLKTALSILQSQDGP 209
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
+FS R +TVST GLVP +++F E++ LA+SLNA+TDE RN MP+NRK+ + L+E
Sbjct: 210 NFSHRHITVSTVGLVPMIERFGQETDVKLAISLNASTDEQRNQTMPVNRKWNIEALLEAC 269
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
R + + ++ FEYV+L G NDS +DA RLI L++GIP K+NLI +N + G F T
Sbjct: 270 R-KFPLRQGRRITFEYVLLRGFNDSDEDAYRLIELLRGIPAKVNLIPYNENPGLGFHTTG 328
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
+E+ +FR ILA F+R +RG D ACGQL N
Sbjct: 329 EERAEQFRAILAEGHIAAFIRQNRGRDIAGACGQLAN 365
>gi|146276099|ref|YP_001166258.1| radical SAM protein [Rhodobacter sphaeroides ATCC 17025]
gi|205829868|sp|A4WNI9.1|RLMN_RHOS5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145554340|gb|ABP68953.1| radical SAM enzyme, Cfr family [Rhodobacter sphaeroides ATCC 17025]
Length = 392
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/371 (40%), Positives = 226/371 (60%), Gaps = 29/371 (7%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAH 153
++ LP+K G + + G++ EL + + QA M +W+ +Y G +A
Sbjct: 10 DVMTLPRKLPEGGPLNIVGLTREELMAALVAAGTPERQARMRMGQVWQWVYHWGVRDFAQ 69
Query: 154 CTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPC 210
T+ L KD++ +L+EH A+ L +++T S+DGTRK L + G +ETV IP
Sbjct: 70 MTN----LAKDYRALLAEHF---AIVLPEVVTRQISADGTRKYLIRIAGGHEVETVYIP- 121
Query: 211 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SS 261
GR T+CVSSQVGC + C FC+TG L R+LTA EIV Q + R L
Sbjct: 122 EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMLVRDDLGEWPERGAPKD 181
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ++N+V MGMGEPL+N ENV A +++ +GL S R++T+STSG+VP++ + E
Sbjct: 182 ETRLVSNLVLMGMGEPLYNFENVRNAMKVVMDGEGLSLSRRRITLSTSGVVPEIARTAEE 241
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
C LA+S +ATTDEVR+ ++PIN+++ + L+++LR+ N+ ++ FEYVML G+ND
Sbjct: 242 IGCQLAISFHATTDEVRDILVPINKRWNIRTLLDSLRDYPRLSNSERITFEYVMLDGIND 301
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DA+RL+ L+ GIP KINLI FN G+ + +T E++ F +I+ AG +R R
Sbjct: 302 SDADARRLVKLISGIPSKINLIPFNEWPGAPYRRSTPERIAAFADIIYKAGYASPIRTPR 361
Query: 442 GDDQMAACGQL 452
G+D MAACGQL
Sbjct: 362 GEDIMAACGQL 372
>gi|340027865|ref|ZP_08663928.1| radical SAM protein [Paracoccus sp. TRP]
Length = 396
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 217/362 (59%), Gaps = 23/362 (6%)
Query: 107 LPKKGSRVLLKGMSFTELQQWV-------RSHAFRPGQALMLWKRLYGDDIWAHCTDELE 159
LP+ G RV + G++ +L + R R GQ + W +G +A T+
Sbjct: 20 LPETG-RVNIIGLTRDQLHDALIEAGTPERQARMRVGQ-IWQWVYHWGVRDFALMTN--- 74
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
L KD++ +L+ E + S+DGTRK L + G +ETV IP GR T+C+
Sbjct: 75 -LAKDYRALLAGKFEIAVPEIVTRQVSADGTRKYLLRIAGGHEVETVYIP-EEGRGTLCI 132
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SEVGSITNVV 270
SSQVGC + C FC+TG L R+LTA EIV Q + AR L E ++NVV
Sbjct: 133 SSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLDEWPQPGAPKDETRLVSNVV 192
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N ENV A +++ +G+ S R++T+STSG+VP++ + E C LAVS
Sbjct: 193 LMGMGEPLYNFENVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIARTAEEIGCLLAVSF 252
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+ATTD+VRN ++P+NRK+ + +L+ LRE N+ ++ FEYVML GVNDS DDA+RL+
Sbjct: 253 HATTDDVRNRLVPVNRKWNIEVLLNALREYPRLSNSERITFEYVMLDGVNDSDDDARRLV 312
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++GIP K+NLI FN GS + ++ +++ F +I+ AG +R RG+D MAACG
Sbjct: 313 KLIRGIPAKVNLIPFNEWPGSPYRRSSWDRIEAFADIVHKAGYASPIRTPRGEDIMAACG 372
Query: 451 QL 452
QL
Sbjct: 373 QL 374
>gi|294675798|ref|YP_003576413.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
gi|294474618|gb|ADE84006.1| radical SAM family protein [Rhodobacter capsulatus SB 1003]
Length = 393
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 152/370 (41%), Positives = 221/370 (59%), Gaps = 27/370 (7%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HC 154
++ LP+K G +V L G++ +L+ + + QA M +W+ +Y W
Sbjct: 11 DVLTLPRKLPEGGKVNLVGLTRDQLRDALIAAGTPEKQAKMRVGQVWQWIYH---WGVRD 67
Query: 155 TDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCN 211
+ L KD++ +L H E ++L +++T S DGTRK L + G +E V IP
Sbjct: 68 FGAMTNLAKDYRALLDRHFE---IALPEVVTCQVSMDGTRKYLLRIAGGHEVEAVYIP-E 123
Query: 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSE 262
R T+C+SSQVGC + C FC+TG L R+LTA EIV Q + AR L E
Sbjct: 124 ENRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPVPGEPKDE 183
Query: 263 VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES 322
I+NVV MGMGEPL+N ENV A +++ +GL S R++T+STSG+VP++ + E
Sbjct: 184 TRLISNVVLMGMGEPLYNFENVRDAMQVVMDNEGLTLSRRRITLSTSGVVPEIARTAEEI 243
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 382
C LA+S +ATTD VR+ ++P+N+K+ + L++ LR+ N+ ++ FEYVML GVNDS
Sbjct: 244 GCLLAISFHATTDAVRDKLVPVNKKWNIKTLLDALRDYPRLSNSERITFEYVMLKGVNDS 303
Query: 383 FDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
DDA+RL+ L+QGIP KINLI FN GS + + E++ F +I+ AG +R RG
Sbjct: 304 DDDARRLVRLIQGIPAKINLIPFNEWPGSPYKRSDWERIEAFADIVYKAGYAAPIRTPRG 363
Query: 443 DDQMAACGQL 452
+D MAACGQL
Sbjct: 364 EDIMAACGQL 373
>gi|406890928|gb|EKD36687.1| hypothetical protein ACD_75C01407G0002 [uncultured bacterium]
Length = 362
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 221/370 (59%), Gaps = 24/370 (6%)
Query: 112 SRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
++V LK ++ + +V S AFR G+ +M W G +A TD L K+F+ +
Sbjct: 6 NKVDLKNLTQAGIVAYVVSLGQPAFR-GKQIMGWLYRPGVTDFAQMTD----LAKEFRSI 60
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L+EHA + I S+DG K F L DG +IE+V+IP R T+C+SSQVGCAM
Sbjct: 61 LAEHAFISRFTDPLIEKSADGCVKFGFRLGDGNIIESVLIP-EPDRNTLCISSQVGCAMG 119
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE-----VG--SITNVVFMGMGEPLHNV 281
C FC TG MG KR+LT AEIV Q R L + +G +TNVVFMGMGEPL+N+
Sbjct: 120 CSFCLTGTMGFKRNLTPAEIVNQICGVRDYLLDQPREQLIGPDRVTNVVFMGMGEPLNNL 179
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
ENV+ + +I+ ++GL +PR++TVST G+VP+L++ +S LA+SL+A DE R +
Sbjct: 180 ENVLDSLSIVTEQKGLDLTPRRITVSTCGIVPKLRELGEKSPVNLAISLHAVDDETRRRL 239
Query: 342 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
MPIN +Y + L++ R + +++FEY++L G+NDS DA+ L + GIPCKIN
Sbjct: 240 MPINDRYSIDELLDACR-DFPMPKRKRIMFEYILLKGINDSDRDARELARKLSGIPCKIN 298
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAP 461
L+ +N G + ++++ F+ IL A TVF+R SRG D AACGQL +
Sbjct: 299 LLPYNESAGLPYQSPGMDRLLAFQQILLEAHYTVFIRNSRGADISAACGQLATEKS---- 354
Query: 462 LLRVPEKFQT 471
VP+ F +
Sbjct: 355 ---VPQDFDS 361
>gi|108757013|ref|YP_631737.1| radical SAM protein [Myxococcus xanthus DK 1622]
gi|123074312|sp|Q1D6I6.1|RLMN2_MYXXD RecName: Full=Dual-specificity RNA methyltransferase RlmN 2;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 2; AltName:
Full=23S rRNA m2A2503 methyltransferase 2; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
2; AltName: Full=tRNA m2A37 methyltransferase 2
gi|108460893|gb|ABF86078.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
Length = 378
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/362 (42%), Positives = 210/362 (58%), Gaps = 16/362 (4%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSH----AFRPGQALMLWKRLYGDDIWAHCTDELEGLNK 163
P V + +S L ++V AFR Q + W G A DE+ L+K
Sbjct: 18 PAPAKLVDVASLSLEALSRFVTEELGERAFRAPQ-IYRWLHQRG----ATSFDEMTDLSK 72
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
++ L AE L L S+DGT K + DG IE+V +P R T+CVS+QV
Sbjct: 73 VLREKLRARAEIVPLVKDCELRSTDGTIKYRWKTRDGRYIESVYMPTE-DRRTLCVSTQV 131
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-----ITNVVFMGMGEPL 278
GCAM C FC TG MGLKR+LT +EIV Q R + G ++N+VFMGMGEPL
Sbjct: 132 GCAMACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRKNEGHETLRPLSNLVFMGMGEPL 191
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
HN EN+ A +I+ E G +FS R +TVST GLVP +++F E++ LA+SLNA+TDE R
Sbjct: 192 HNFENLKTALSILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNASTDEQR 251
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
+ MP+NRK+ + L++ R + + ++ FEYV++ G ND+ +DA RLI L++GIP
Sbjct: 252 SKTMPVNRKWNIAALLDACR-KFPLRQGRRITFEYVLIKGFNDADEDAHRLIELLKGIPV 310
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 458
K+NLI +N + G F T +E+ EFR ILA ++R +RG D ACGQL N G
Sbjct: 311 KVNLIPYNENPGLGFHTTGEERAEEFRAILADGHVAAYIRRNRGRDIAGACGQLANRGET 370
Query: 459 QA 460
QA
Sbjct: 371 QA 372
>gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 376
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/349 (42%), Positives = 215/349 (61%), Gaps = 18/349 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
L GM+ +L+ + + +P +A+ + K ++ W ++ L+K ++ L++ AE
Sbjct: 9 LLGMTRQQLEGFFTAMGEKPFRAVQVLKWIHQH--WVEDFQDMTDLSKALRERLAQVAEI 66
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 235
RA + S+DGT K L LDDG IETV IP + R T+CVSSQVGCA++C FC T
Sbjct: 67 RAPEVVYDQASADGTHKWLLRLDDGNCIETVFIP-EKDRGTLCVSSQVGCALDCTFCSTA 125
Query: 236 RMGLKRHLTAAEIVEQAVFARRLLSSE---VGS-----ITNVVFMGMGEPLHNVENVIKA 287
R G R+L++AEIV Q A R L+ E G ++NVV MGMGEPL N +NV+ A
Sbjct: 126 RQGFNRNLSSAEIVGQLWLANRRLAPERTVAGKAPERVVSNVVLMGMGEPLLNFDNVVDA 185
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
+M+ + S R+VT+STSG+VP + + + ALAVSL+A D +R+ ++PINRK
Sbjct: 186 MRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETLDVALAVSLHAPNDALRDELVPINRK 245
Query: 348 YKLGLLIET----LREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
Y + L++ +REE H + ++ FEYVML GVNDS + A++LI L++ +PCKINLI
Sbjct: 246 YPIAELLDACRRYVREERHHQ---RITFEYVMLEGVNDSPEHARQLIALLRDVPCKINLI 302
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP +++ + D + F+ +LA AG T R +RGDD AACGQL
Sbjct: 303 PFNPFPETRYRRSGDAAIRRFQEMLANAGYTTITRRTRGDDIDAACGQL 351
>gi|209965840|ref|YP_002298755.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW]
gi|209959306|gb|ACI99942.1| radical SAM enzyme, Cfr family [Rhodospirillum centenum SW]
Length = 399
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 156/354 (44%), Positives = 216/354 (61%), Gaps = 15/354 (4%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDF 165
P+ RV L G+S +L+ F +A +W+ +Y + TD + L K
Sbjct: 13 PRSDGRVNLVGLSREDLEAEFARAGFEKFRARQVWQWIYNRGV----TDFAAMTNLAKPA 68
Query: 166 KKMLSEHAEF-RALSLKDILTSSDGTRKIL-FMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
++ L+EH R L++KD L S DGTRK L M DG IETV IP R T+CVSSQV
Sbjct: 69 RERLAEHYVIERPLAVKD-LQSDDGTRKWLCRMPADGQEIETVHIP-EEDRGTLCVSSQV 126
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS-----SEVGSITNVVFMGMGEPL 278
GC M C+FC+TG L R+LT+AEIV Q + AR L +E ++N+V MGMGEPL
Sbjct: 127 GCTMTCRFCHTGTQRLVRNLTSAEIVGQVMLARDHLGEWPSPAEGRMLSNIVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N ENV +A I++ +G+ S R++T+STSG+VP +++ E LAVSL+A TDE+R
Sbjct: 187 FNYENVARALKIVMDGEGIAISKRRITLSTSGVVPMMRRCGAELGVNLAVSLHAVTDELR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
N I+PIN+KY + L++ +R N +V +EYVML GVNDS DA+ L+ L++GIP
Sbjct: 247 NRIVPINKKYPIAELMDAVRTYPGLNNARRVTWEYVMLKGVNDSLADARALVRLIRGIPS 306
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
KINLI FNP G+ F + ++++ F + + AG +R RG D MAACGQL
Sbjct: 307 KINLIPFNPWPGAPFECSDWDQIVRFSDFVNDAGYASPIRAPRGKDIMAACGQL 360
>gi|114776700|ref|ZP_01451743.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
gi|114552786|gb|EAU55217.1| radical SAM superfamily protein [Mariprofundus ferrooxydans PV-1]
Length = 357
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/345 (42%), Positives = 200/345 (57%), Gaps = 11/345 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWK---RLYGDDIWAHCTDELEGLNKDFKKM 168
S LL GM+ +L + P A L R YG D + T +L +
Sbjct: 3 SPALLNGMNHDQLLALCGAAGVSPAHADRLRAAIFRHYGSDTDINNTPDLP---LRLRSY 59
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L+EH + DGTRK+L + DG +ETV+IP N GR T C+S+QVGCA+
Sbjct: 60 LAEHTALLQPASTATSEGEDGTRKLLLAMADGREVETVLIPGN-GRLTQCISTQVGCAVG 118
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAA 288
C FC T GL R+LTAAE+V + +R+ +V N+V MGMGEPLHN + V
Sbjct: 119 CTFCLTATAGLTRNLTAAEMVAEVTAGQRISGRQV---RNLVLMGMGEPLHNYDEVAHFV 175
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL-NESNCALAVSLNATTDEVRNWIMPINRK 347
+ +G+ FSP +VT+STSGLVP +++ + +E C LAVSLNAT D VR+ IMPINRK
Sbjct: 176 RLATDPKGMAFSPNRVTLSTSGLVPAMQRMIRDELPCNLAVSLNATNDAVRDTIMPINRK 235
Query: 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
Y + +L++T+RE + + N +VL EYV+L G+NDS DA RL L+ G+ C +NL+ FN
Sbjct: 236 YPIAMLLDTVREYIRVRGNKRVLIEYVLLDGINDSQADAIRLCELMAGMGCTVNLLPFNA 295
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ G F D + FR IL AG +R S+G D AACGQL
Sbjct: 296 YPGLPFQRPADAAVSAFRAILVEAGIITVVRESKGRDIAAACGQL 340
>gi|95929456|ref|ZP_01312199.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
gi|95134572|gb|EAT16228.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
Length = 342
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 155/342 (45%), Positives = 204/342 (59%), Gaps = 18/342 (5%)
Query: 116 LKGMSFTELQQWVR---SHAFRPGQALM-LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
LK S EL +++ FR Q L ++KR D DE+ L+K + L E
Sbjct: 6 LKNFSPDELLEFLSGMGKERFRCEQLLRWIYKRGVTD------LDEMTDLSKTLRAELKE 59
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
+ + + TS+DGTRK LF LDDG IETV IP + R+T+C+SSQVGCAM+C F
Sbjct: 60 KSYISDWQPEVVETSADGTRKYLFRLDDGQSIETVRIPMDNDRSTLCISSQVGCAMDCDF 119
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIM 291
C TG G R+LTAAEIV Q ++ GSI N+V MGMGEPLHN++NV++A I
Sbjct: 120 CVTGSFGFIRNLTAAEIVNQVCAV-----AKEGSINNIVLMGMGEPLHNLDNVVRALKIF 174
Query: 292 VHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 351
G +S RKVT+ST GLVPQ+K+ LAVSLNATT+EVR+ +MPINR+Y L
Sbjct: 175 YAAAGFDYSSRKVTLSTCGLVPQMKELGERIVVNLAVSLNATTNEVRDKLMPINRRYPLE 234
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
L++ R ++ ++ FEY+++ +NDS DAKRL+ L+ GI KINLI FN H GS
Sbjct: 235 ELMDACR-RFPMASHRRITFEYILIRDLNDSLADAKRLVKLMHGIRGKINLIPFNEHEGS 293
Query: 412 QFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ D+ IE F+ L R S+G D AACGQL
Sbjct: 294 PYR-CPDQATIEAFQTYLLNRDIVAIRRASKGQDISAACGQL 334
>gi|338534778|ref|YP_004668112.1| radical SAM protein [Myxococcus fulvus HW-1]
gi|337260874|gb|AEI67034.1| radical SAM protein [Myxococcus fulvus HW-1]
Length = 378
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 204/335 (60%), Gaps = 14/335 (4%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI-LTSSDGT 190
AFR Q + W G A DE+ L+K ++ L AE L +KD+ L SSDGT
Sbjct: 46 AFRAPQ-IYRWLHQRG----ATSFDEMTDLSKALREKLRTKAEIIPL-VKDVELRSSDGT 99
Query: 191 RKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
K + DG IE+V +P R T+CVS+QVGCAM C FC TG MGLKR+LT +EIV
Sbjct: 100 IKYRWKTRDGRYIESVYMPTE-DRRTLCVSTQVGCAMACGFCMTGTMGLKRNLTPSEIVA 158
Query: 251 QAVFARRLLSSEVGS-----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q R + G ++N+VFMGMGEPLHN EN+ A I+ + G +FS R +T
Sbjct: 159 QVHAVNREVRKNEGHETLRPLSNLVFMGMGEPLHNFENLKTALAILQSQDGPNFSHRHIT 218
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
VST GLVP +++F E++ LA+SLNA+TDE R+ MP+NRK+ + L++ R + +
Sbjct: 219 VSTVGLVPMIERFGKETDVKLAISLNASTDEQRSKTMPVNRKWNIAALLDACR-KFPLRQ 277
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
++ FEYV++ G ND+ +DA RLI L++GIP K+NLI +N + G F T +E+ +FR
Sbjct: 278 GRRITFEYVLIQGFNDADEDAHRLIDLLKGIPVKVNLIPYNENPGLGFHTTGEERAEQFR 337
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQA 460
ILA ++R +RG D ACGQL N G QA
Sbjct: 338 AILADGHVAAYIRRNRGRDIAGACGQLANTGEQQA 372
>gi|262199015|ref|YP_003270224.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
gi|262082362|gb|ACY18331.1| radical SAM enzyme, Cfr family [Haliangium ochraceum DSM 14365]
Length = 378
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 140/321 (43%), Positives = 200/321 (62%), Gaps = 14/321 (4%)
Query: 144 RLYGDDIW-----AHCT--DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFM 196
R G+ IW A T +++ L + +++L+E L + TS DGTRK+
Sbjct: 39 RYRGEQIWRWVHGAGVTRLEDMANLPRTLRELLAERTTLGTLRVDAAQTSRDGTRKLRLR 98
Query: 197 LDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR 256
DG IETV+IP + + T C+SSQVGCA++C FC T ++GL RHL EIV+Q V+
Sbjct: 99 TRDGRAIETVLIP-DGDKLTQCISSQVGCALDCDFCATAKLGLTRHLDPGEIVDQ-VYRG 156
Query: 257 RLLSSEVG---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP 313
R L +EV ITN+V+MGMGEPLHN NV+K+ ++ E G + S R++TVST G VP
Sbjct: 157 RALLAEVEPERRITNLVYMGMGEPLHNYANVVKSLRLLTSELGANLSQRRITVSTVGQVP 216
Query: 314 QLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372
+++ E LA+SLNA++DE+R+ IMP+NRK+ + L++ +R+ + +V FE
Sbjct: 217 GIEKLGREDVRPNLAISLNASSDEIRDRIMPVNRKWNIARLLQAVRD-YPLERRRRVTFE 275
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
YV+LAGVNDS DA RL L++GIPCK+N+I +NPH G+ + + + F+N G
Sbjct: 276 YVLLAGVNDSMADAARLSRLLRGIPCKLNIIPWNPHPGAPYQRPSAHAVEAFQNEAKRLG 335
Query: 433 CTVFLRLSRGDDQMAACGQLG 453
+LR RGDD AACGQL
Sbjct: 336 LPTYLRTPRGDDIDAACGQLA 356
>gi|222056625|ref|YP_002538987.1| ribosomal RNA large subunit methyltransferase N [Geobacter daltonii
FRC-32]
gi|221565914|gb|ACM21886.1| radical SAM enzyme, Cfr family [Geobacter daltonii FRC-32]
Length = 345
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 199/340 (58%), Gaps = 9/340 (2%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
+V +K + ++L+ + +A ++K LY + A ++ L+KDF+ L +
Sbjct: 3 KVDIKNFTLSQLEAHITGQGKERFRAKQIFKWLYQQN--ATSFAQMTNLSKDFRAELEKT 60
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A L + + +S+DGT+K LF L DG +E+V+IP + R T+C+SSQVGCAM C+FC
Sbjct: 61 ARISNLEAEAVESSADGTKKYLFRLSDGNAVESVLIP-DEDRNTLCISSQVGCAMGCEFC 119
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
TG L R+LT AEIV Q ++ + N+VFMGMGEPL N+ENVI A I+
Sbjct: 120 LTGTFRLTRNLTTAEIVNQVCAVKK-----NEPVRNIVFMGMGEPLANLENVIGALRILT 174
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
G FS RKVT+ST+GLVP++ + LA+S+NATTDEVR+ IMP+NR+Y L
Sbjct: 175 DPDGFQFSTRKVTLSTAGLVPEMAELGAAVMVNLAISMNATTDEVRDRIMPVNRRYPLKE 234
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
L+ + + + EYVM+ GVNDS DDAKRL+ L+ P K+NLI FN H G
Sbjct: 235 LLAACK-AFPLPSRRWITVEYVMIKGVNDSLDDAKRLVRLISTFPSKVNLIPFNEHEGCD 293
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
T + + F L TV R SRG D AACGQL
Sbjct: 294 LRTPTQDSIDRFHKFLLDKHVTVITRSSRGSDISAACGQL 333
>gi|119385232|ref|YP_916288.1| radical SAM protein [Paracoccus denitrificans PD1222]
gi|205829795|sp|A1B4Z8.1|RLMN_PARDP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119374999|gb|ABL70592.1| 23S rRNA m(2)A-2503 methyltransferase [Paracoccus denitrificans
PD1222]
Length = 391
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 222/364 (60%), Gaps = 27/364 (7%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEG 160
LP+ R L+ G++ +L + + QA M +W+ +Y G +A T+
Sbjct: 17 LPETAGRNLV-GLTREQLHEALIQAGTPERQARMRVGQIWQWIYHWGVRDFAQMTN---- 71
Query: 161 LNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
L KD++ +L+E+ E ++L +I+T S+DGTRK L + G +ETV IP R T+
Sbjct: 72 LAKDYRALLAENFE---IALPEIVTRQISADGTRKYLLRISGGHEVETVYIP-EENRGTL 127
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSEVGSITN 268
C+SSQVGC + C FC+TG L R+LTA EIV Q + AR L E ++N
Sbjct: 128 CISSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMVARDDLGEWPKPGAPKDETRLVSN 187
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL+N +NV A +++ +G+ S R++T+STSG+VP++ + E C LAV
Sbjct: 188 VVLMGMGEPLYNFDNVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIAKTAEEIGCLLAV 247
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKR 388
S +ATTDE R+ ++P+NRK+ + L+ LRE N+ ++ FEYVML GVNDS +DA+R
Sbjct: 248 SFHATTDETRDKLVPVNRKWNIETLLNALREYPRLSNSERITFEYVMLDGVNDSDEDARR 307
Query: 389 LIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAA 448
L+ L++GIP K+NLI FN GS + + E++ F +I+ AG +R RG+D MAA
Sbjct: 308 LVRLIRGIPAKVNLIPFNEWPGSPYRRSGWERIEAFADIVHKAGYASPIRTPRGEDIMAA 367
Query: 449 CGQL 452
CGQL
Sbjct: 368 CGQL 371
>gi|405375716|ref|ZP_11029742.1| Ribosomal RNA large subunit methyltransferase N [Chondromyces
apiculatus DSM 436]
gi|397086080|gb|EJJ17224.1| Ribosomal RNA large subunit methyltransferase N [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 355
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 202/335 (60%), Gaps = 14/335 (4%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSS-DGT 190
AFR Q L W G A DE+ L+K ++ L AE L +KD+ S DGT
Sbjct: 23 AFRAPQ-LYRWLHQRG----ATSFDEMTDLSKALREKLRARAEIIPL-VKDLEQRSIDGT 76
Query: 191 RKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
K + DG IE+V +P R T+CVS+QVGCAM C FC TG MGLKR+LTA+EIV
Sbjct: 77 IKYRWKTRDGRFIESVYMPAE-DRRTLCVSTQVGCAMACSFCMTGTMGLKRNLTASEIVA 135
Query: 251 QAVFARRLLSSEVGS-----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q R + G ++N+VFMGMGEPLHN EN+ A I+ + G +FS R +T
Sbjct: 136 QVHAVNREVRKNEGHETLRPLSNLVFMGMGEPLHNFENLKTALAILQSQDGPNFSHRHIT 195
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
VST GLVP +++F E++ LA+SLNA+TDE R+ MP+NRK+ + L++ R +
Sbjct: 196 VSTVGLVPMIERFGKETDVKLAISLNASTDEQRSKTMPVNRKWNIAALLDACR-TFPLRQ 254
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
++ FEYV++ G ND+ +DA RLI L++GIP K+NLI +N + G F T +E+ EFR
Sbjct: 255 GRRITFEYVLIKGFNDADEDAHRLIELLKGIPVKVNLIPYNENPGLGFHTTGEERAEEFR 314
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQA 460
ILA ++R +RG D ACGQL N G QA
Sbjct: 315 AILADGHVAAYIRRNRGRDIAGACGQLANRGETQA 349
>gi|442321386|ref|YP_007361407.1| radical SAM protein [Myxococcus stipitatus DSM 14675]
gi|441489028|gb|AGC45723.1| radical SAM protein [Myxococcus stipitatus DSM 14675]
Length = 379
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/358 (42%), Positives = 210/358 (58%), Gaps = 16/358 (4%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSH----AFRPGQALMLWKRLYGDDIWAHCTDELEGLNK 163
P V + +S L ++V AFR Q + W G A DE+ L+K
Sbjct: 20 PAPAKLVDVASLSMEALTRFVTEQLGERAFRAPQ-IYRWLHQRG----AVSFDEMTDLSK 74
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
++ L AE L L S+DGT K + DG IE+V +P + R T+CVS+QV
Sbjct: 75 VLREKLRAAAEIIPLVKDCELRSTDGTIKYRWKTRDGRYIESVYMP-SEDRRTLCVSTQV 133
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-----ITNVVFMGMGEPL 278
GCAM C FC TG MGLKR+LT +EIV Q R + + G ++N+VFMGMGEPL
Sbjct: 134 GCAMACGFCMTGTMGLKRNLTPSEIVAQVHAVNREVRANEGHETLRPLSNLVFMGMGEPL 193
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
HN EN+ A I+ E G +FS R +TVST GLVP +++F E++ LA+SLNA+TDE R
Sbjct: 194 HNFENLKTALAILQSEDGPNFSHRHITVSTVGLVPMIERFGKETDVKLAISLNASTDEQR 253
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
+ MP+NRK+ + L++ R + + ++ FEYV++ G ND+ +DA RLI L++GIP
Sbjct: 254 SKTMPVNRKWNIAALLDACR-KFPLRQGRRITFEYVLIQGFNDADEDAHRLIQLLKGIPA 312
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
KINLI +N + G F T +E+ EFR IL+ A ++R +RG D ACGQL N G
Sbjct: 313 KINLIPYNENPGLGFQTTAEERAEEFRAILSEAHVAAYIRKNRGRDIAGACGQLANRG 370
>gi|392380671|ref|YP_005029867.1| ribosomal RNA large subunit methyltransferase N [Azospirillum
brasilense Sp245]
gi|356875635|emb|CCC96379.1| ribosomal RNA large subunit methyltransferase N [Azospirillum
brasilense Sp245]
Length = 389
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 210/345 (60%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSE-H 172
L G+S EL+ + S +A LW +Y G +A T L K ++ L+E +
Sbjct: 23 LVGLSRDELEAEMLSVGLEKFRARQLWHWIYHRGATDFAVMTT----LAKPVREKLAESY 78
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A R ++D L S DGTRK L + DG +E+V IP R T+CVSSQVGC + C+FC
Sbjct: 79 AVARPTVVRD-LKSVDGTRKWLLRMPDGQEVESVHIP-EEDRGTLCVSSQVGCTLTCRFC 136
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHNVENVIKA 287
+TG L R+L A+EIV Q + AR L + I+N+V MGMGEPL N ENV KA
Sbjct: 137 HTGTQRLVRNLDASEIVAQVMLARDALGEWPAPPDGRMISNIVMMGMGEPLFNYENVAKA 196
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
I++ G+ S R++T+STSG+VP +K+ E N LAVSL+A TDE+R+ IMPINRK
Sbjct: 197 LKIVMDGDGISISKRRITLSTSGVVPAMKRCGEELNVNLAVSLHAVTDELRDIIMPINRK 256
Query: 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
Y L L++ R N ++ FEYVML G+NDS DA+ L+ L++GIP KINLI FNP
Sbjct: 257 YPLKELMDACRNYPGLNNARRITFEYVMLKGINDSPADARALVKLLEGIPSKINLIPFNP 316
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
G+ + +TD + F +I+ AG +R +RG+D MAACGQL
Sbjct: 317 WPGAPYERSTDRAIQVFGDIVNNAGYASPVRTTRGEDIMAACGQL 361
>gi|260574031|ref|ZP_05842036.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2]
gi|259023497|gb|EEW26788.1| radical SAM enzyme, Cfr family [Rhodobacter sp. SW2]
Length = 429
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 151/370 (40%), Positives = 220/370 (59%), Gaps = 27/370 (7%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCT 155
++ LP+K G ++ + G++ +L + + QA M +W+ +Y W
Sbjct: 10 DVLTLPRKLPEGGKINIVGLTRDQLHAALVAAGTPERQAKMRVGQVWQWVYH---WGKRD 66
Query: 156 DEL-EGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCN 211
L L KD++ L+EH + L ++T S DGTRK L + G +E V IP +
Sbjct: 67 FALMSNLAKDYRAFLAEHF---VIELPQVVTRQLSDDGTRKYLVRIAGGHEVEVVYIPED 123
Query: 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SE 262
GR T+C+SSQVGC + C FC+TG L R+LTAAEIV Q + AR L E
Sbjct: 124 -GRGTLCISSQVGCTLTCTFCHTGTQVLVRNLTAAEIVGQVMLARDDLGEWPVQGAPKDE 182
Query: 263 VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES 322
I+NVV MGMGEPL+N +NV A +++ +G+ R++T+STSG+VP++ + E
Sbjct: 183 TRLISNVVLMGMGEPLYNFDNVRDAMKVVMDNEGIALGRRRITLSTSGVVPEIARTAREI 242
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 382
C LAVSL+ATTDEVR+ ++PINRK+ + L++ LR N+ ++ FEYVML GVNDS
Sbjct: 243 GCLLAVSLHATTDEVRDKLVPINRKWNIAALMDELRAYPGLTNSERITFEYVMLQGVNDS 302
Query: 383 FDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
+DA RL+ L++GIP KINLI FN G+ + ++ ++ F +I+ AG +R RG
Sbjct: 303 KEDAYRLVELIKGIPAKINLIPFNEWPGAPYKRSSGNRIHAFADIIYNAGYASPIRTPRG 362
Query: 443 DDQMAACGQL 452
+D MAACGQL
Sbjct: 363 EDIMAACGQL 372
>gi|294661183|ref|YP_003573058.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus
5a2]
gi|227336333|gb|ACP20930.1| hypothetical protein Aasi_1616 [Candidatus Amoebophilus asiaticus
5a2]
Length = 339
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/330 (43%), Positives = 198/330 (60%), Gaps = 11/330 (3%)
Query: 128 VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSS 187
++ AFR Q +W+ +Y + A + + F++ L H +L S
Sbjct: 4 LKEPAFRADQ---VWRWVY--QLGAQSFSTMNNVPLLFRETLGLHYSLERTQEHQVLISK 58
Query: 188 DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
D T K L D +ETV IP + R+T+C+SSQVGC +NC+FC+TG L R+L A E
Sbjct: 59 DKTIKWLLAFSDANEVETVWIP-EQTRSTLCISSQVGCTLNCKFCHTGTQPLVRNLRAGE 117
Query: 248 IVEQAVFARRLLS-----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
IV Q + A+ +L + I N+V MGMGEPL N E V KA IM+H QGL S +
Sbjct: 118 IVAQLLHAKDVLQDWPSHAPTRKINNIVMMGMGEPLLNYEQVAKAIQIMMHPQGLDISRK 177
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
K+T+STSG+VPQ+K+ E LA+SL+A TDE+RN ++PIN+KY + L++ R+
Sbjct: 178 KITLSTSGIVPQIKRCAEELGVNLAISLHAVTDELRNHLVPINKKYPINELLQACRDYAS 237
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
K+ FEYVML GVNDS DAK+L+ L++GIP KINLI FNP G++ +T+ +
Sbjct: 238 ITGCRKITFEYVMLKGVNDSPADAKKLVDLIKGIPAKINLIPFNPWPGTELECSTESNIK 297
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F I+ AG +R RG+D MAACGQL
Sbjct: 298 QFAAIIEKAGYIAPVRTPRGEDIMAACGQL 327
>gi|310817045|ref|YP_003965009.1| ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
vulgare Y25]
gi|385234631|ref|YP_005795973.1| ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
vulgare WSH-001]
gi|308755780|gb|ADO43709.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
vulgare Y25]
gi|343463542|gb|AEM41977.1| Ribosomal RNA large subunit methyltransferase N [Ketogulonicigenium
vulgare WSH-001]
Length = 409
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/356 (43%), Positives = 213/356 (59%), Gaps = 26/356 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDEL-EGLNKDFKKMLS 170
L GM+ +++Q + QA M LW+ +Y +W L L KD + L
Sbjct: 39 LVGMTRDQMRQAMIDIGVPEKQAKMRMGQLWQWIY---VWGVRDFALMTNLAKDLRAKL- 94
Query: 171 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
AE L++ +++T S DGTRK L + G +E V IP R T+CVSSQVGC +
Sbjct: 95 --AETYVLAVPEVVTRQVSEDGTRKYLVRIAGGHEVEVVYIP-ETDRGTLCVSSQVGCTL 151
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SEVG--SITNVVFMGMGE 276
C FC+TG L R+LT AEIV Q + AR L SE+G ++N+V MGMGE
Sbjct: 152 TCSFCHTGTQKLVRNLTTAEIVGQVMVARDDLGEWPHPGQDVSELGPRRLSNIVLMGMGE 211
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL+N ENV A I + +G+ S R++T+STSG+VP++ + E C LAVS +ATTD+
Sbjct: 212 PLYNFENVRDAMKICMDPEGIQLSRRRITLSTSGIVPEIARTAVEIGCQLAVSFHATTDD 271
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
VRN ++P+NRK+ + L+ LRE N+ ++ FEYVML GVNDS DDA+RL+ L++GI
Sbjct: 272 VRNVLVPVNRKWNIEALLTALREYPALSNSERITFEYVMLRGVNDSDDDARRLVELIRGI 331
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P KINLI FN GS + +T ++ F +I+ AG +R RG+D MAACGQL
Sbjct: 332 PAKINLIPFNEWPGSPYQRSTKARIEAFGDIVNRAGYASPVRRPRGEDIMAACGQL 387
>gi|153208845|ref|ZP_01947069.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
gi|165921447|ref|ZP_02219635.1| radical SAM enzyme, Cfr family [Coxiella burnetii Q321]
gi|212218666|ref|YP_002305453.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
gi|254807166|sp|B6J7Q9.1|RLMN_COXB1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120575696|gb|EAX32320.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
gi|165916762|gb|EDR35366.1| radical SAM enzyme, Cfr family [Coxiella burnetii Q321]
gi|212012928|gb|ACJ20308.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
Length = 370
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 207/344 (60%), Gaps = 10/344 (2%)
Query: 113 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L +S TELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSETELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 289
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 290 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
L LI R+ + V FEYVM+ G+ND DAK+LI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLADVPCKINLIPFNSFQ 296
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
>gi|444913286|ref|ZP_21233439.1| Ribosomal RNA large subunit methyltransferase N [Cystobacter fuscus
DSM 2262]
gi|444716045|gb|ELW56902.1| Ribosomal RNA large subunit methyltransferase N [Cystobacter fuscus
DSM 2262]
Length = 387
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 146/339 (43%), Positives = 197/339 (58%), Gaps = 12/339 (3%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
L + + AFR GQ L W G A DE+ L+K ++ L HAE L
Sbjct: 43 LTEQLGERAFRAGQ-LYRWIHQRG----ATSFDEMTDLSKALREKLKAHAEIVPLVKDAE 97
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
S DGT K + DG IE+V +P + R T+CVS+QVGCAM C FC TG +GLKR+L
Sbjct: 98 QRSVDGTIKYRWKTRDGRYIESVYMP-SEDRKTLCVSTQVGCAMACTFCMTGTLGLKRNL 156
Query: 244 TAAEIVEQAVFARRLLSSEVG-----SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 298
T EIV Q R + G ++N+VFMGMGEPLHN EN+ + I+ + G +
Sbjct: 157 TPGEIVAQVHAVNREVRKNEGLETLRPLSNLVFMGMGEPLHNFENLKTSLAILQSQDGPN 216
Query: 299 FSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
FS R +TVST GLVP +++F E++ LA+SLNA+TDE R+ MP+NRK+ + L++ R
Sbjct: 217 FSHRHITVSTVGLVPMIERFGQETDVKLAISLNASTDEQRSKTMPVNRKWNIAALLDACR 276
Query: 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
+ + ++ FEYV+L NDS +DA RLI L+ GIP K+NLI +N + G F T D
Sbjct: 277 -KFPLRQGRRITFEYVLLRDFNDSDEDAARLIQLLDGIPAKVNLIPYNENPGLGFQTTMD 335
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGA 457
E+ FR +L F+R +RG D ACGQL N G
Sbjct: 336 ERAERFRELLCAGHVAAFIRQNRGRDIAGACGQLANRGG 374
>gi|212212364|ref|YP_002303300.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
gi|254807167|sp|B6IZM7.1|RLMN_COXB2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|212010774|gb|ACJ18155.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
Length = 370
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 206/344 (59%), Gaps = 10/344 (2%)
Query: 113 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L +S ELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSEPELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 289
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 290 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
L LI R+ + V FEYVM+ G+ND DAKRLI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRLIRLLADVPCKINLIPFNSFQ 296
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
>gi|392409497|ref|YP_006446104.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfomonile tiedjei DSM
6799]
gi|390622633|gb|AFM23840.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfomonile tiedjei DSM
6799]
Length = 354
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 206/344 (59%), Gaps = 12/344 (3%)
Query: 116 LKGMSFTELQQWVR---SHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L GM +E++ + R +R Q +M W D +A T+ L+K + L+E
Sbjct: 16 LVGMPHSEMEDFFRGLGKERYRAAQ-VMKWIHQDLSDSFAGMTN----LSKRLRDELNER 70
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A +L D+ S DGT K L L+DGL +ETV+IP + T+CVS+QVGCAM C+ C
Sbjct: 71 AGLCIPTLIDMQCSEDGTTKFLLGLEDGLRVETVLIP-SEDHDTLCVSTQVGCAMGCRIC 129
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
TG MG R+LTA EIV Q + RR L S ITN+VFMGMGEPL N + +KA NI+
Sbjct: 130 RTGSMGFVRNLTAGEIVSQLLTVRRRLPS--SRITNIVFMGMGEPLANFDQTVKALNILS 187
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
H G S R++TVST GLVP++ + N LAVSLNA TDE R+ IMPIN+KY +G
Sbjct: 188 HPNGPQVSWRRITVSTVGLVPRITELGNRVRAKLAVSLNAVTDEQRDQIMPINKKYPIGT 247
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
L+ETLR+ + + ++ EYV++ G+NDS DA++L+ L+ I K+NLI N
Sbjct: 248 LMETLRKYPVTRGD-RITIEYVLIRGLNDSDADARQLVRLLNPIRAKVNLIPLNDEATGD 306
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
E++++F++IL +R SRG D +AACGQL + G
Sbjct: 307 LESPLPERVLKFQDILLNRSLMAIVRKSRGRDVLAACGQLASRG 350
>gi|406936421|gb|EKD70145.1| hypothetical protein ACD_46C00621G0003, partial [uncultured
bacterium]
Length = 342
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 146/320 (45%), Positives = 195/320 (60%), Gaps = 9/320 (2%)
Query: 137 QALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFM 196
Q ++ W G D + D + L+KD +K L+E AE + +SDGT K L
Sbjct: 1 QQVLKWIHFNGVDNF----DAMTNLSKDLRKKLAEKAEIIIPQILFEKAASDGTHKWLLR 56
Query: 197 LDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR 256
L+DG IETV IP + R T+C+SSQVGC +NC FC TG+ G R+LT AE++ Q A
Sbjct: 57 LNDGNCIETVFIP-EKTRGTLCISSQVGCILNCDFCSTGKQGFNRNLTTAEMISQLWIAV 115
Query: 257 RLLSSEVG----SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
R LS + G ++TNVV MGMGEPL N +NV+ A N+M+ + S R+VTVST+G+V
Sbjct: 116 RKLSLQQGIHDHAVTNVVMMGMGEPLLNFDNVLPALNLMLDDFAYGLSKRRVTVSTAGVV 175
Query: 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372
P + Q S ALAVSL+A DE+RN I+P+N+KY L L+ RE N + E
Sbjct: 176 PIMYQLREMSEVALAVSLHAPNDELRNKIVPLNKKYPLKELMAVCREYFKDDNRRSITME 235
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
YVMLA VNDS AK+LI L+ G+ K+NLI FNP + + + E ++ FR+IL AG
Sbjct: 236 YVMLANVNDSPIHAKQLIKLLDGVRAKVNLIPFNPFPHTDYQRSDTETIMRFRDILMQAG 295
Query: 433 CTVFLRLSRGDDQMAACGQL 452
+R +RGDD AACGQL
Sbjct: 296 LNTTIRRTRGDDIDAACGQL 315
>gi|226503103|ref|NP_001141039.1| uncharacterized protein LOC100273119 [Zea mays]
gi|194702344|gb|ACF85256.1| unknown [Zea mays]
gi|413950757|gb|AFW83406.1| hypothetical protein ZEAMMB73_769953 [Zea mays]
Length = 194
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 121/146 (82%), Positives = 135/146 (92%)
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
+ILF L+DG VIETV+IPC RGRTT+CVSSQVGCAMNCQFC+TGRMGL++HL+ AEIVEQ
Sbjct: 8 QILFSLEDGSVIETVIIPCARGRTTICVSSQVGCAMNCQFCFTGRMGLRKHLSTAEIVEQ 67
Query: 252 AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL 311
AVFARRL S E+GSI NVVFMGMGEP HN++NVIKA+ IMV EQGLHFSPRKVTVSTSGL
Sbjct: 68 AVFARRLFSDELGSINNVVFMGMGEPFHNIDNVIKASAIMVDEQGLHFSPRKVTVSTSGL 127
Query: 312 VPQLKQFLNESNCALAVSLNATTDEV 337
VPQLK+FL ESNC+LAVSLNATTDEV
Sbjct: 128 VPQLKRFLQESNCSLAVSLNATTDEV 153
>gi|254451490|ref|ZP_05064927.1| radical SAM enzyme, Cfr family [Octadecabacter arcticus 238]
gi|198265896|gb|EDY90166.1| radical SAM enzyme, Cfr family [Octadecabacter arcticus 238]
Length = 399
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 151/367 (41%), Positives = 216/367 (58%), Gaps = 28/367 (7%)
Query: 100 GGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWA-HCTDEL 158
G NI L + R L G+ TE Q +R + +W+ LY W D +
Sbjct: 27 GLTNIVGLTRDQLRDALIGVGVTEKQAKMRVN--------QVWQWLYH---WGVREFDVM 75
Query: 159 EGLNKDFKKMLSEH--AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTT 216
L+KDF+ L+EH E + KD+ S+DGTRK L + G +E V IP + R T
Sbjct: 76 TNLSKDFRATLAEHFKIELPEVVTKDV--STDGTRKYLVRIAGGHEVEVVYIP-EKDRGT 132
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--------- 265
+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L+ E G
Sbjct: 133 LCISSQVGCTLTCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGDNGPRL 192
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + NE C
Sbjct: 193 LSNIVLMGMGEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTANEIGCM 252
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LA+S + TTDE+R+ ++PIN+K+ L L+E L N+ ++ FEYVML VNDS +D
Sbjct: 253 LAISFHGTTDEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDED 312
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A+RL+ L++GIP KINLI FN G+ + + +++ F +I+ AG +R RG+D
Sbjct: 313 ARRLVKLIEGIPAKINLIPFNEWPGAPYKRSDSDRIKAFADIIYNAGYASPIRRPRGEDI 372
Query: 446 MAACGQL 452
MAACGQL
Sbjct: 373 MAACGQL 379
>gi|386815051|ref|ZP_10102269.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
gi|386419627|gb|EIJ33462.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
Length = 409
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 216/347 (62%), Gaps = 8/347 (2%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
++V L S ++ + S +P +A L K L+ ++ + D++ ++K ++ L+E
Sbjct: 47 NKVNLLDFSHEGMKAYFTSIGEKPFRATQLIKWLHQMNVGS--VDQMTNISKPLRQFLTE 104
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
+ RA + S+DGT K L LDDG IETV IP + R T+CVSSQVGCA++C F
Sbjct: 105 NTVIRAPQIIMDQHSADGTHKWLLRLDDGNAIETVFIPED-DRGTLCVSSQVGCALDCTF 163
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAA 288
C T R G R+LT AEI+ Q A+R L ++ G I+NVV MGMGEPL N +NV A
Sbjct: 164 CSTARQGFNRNLTTAEIIGQLWVAKRTLQADPGGARVISNVVMMGMGEPLLNFDNVANAL 223
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+M+ + S R+VT+STSG++P L + + + +LAVSL+A +EVRN ++P+NRKY
Sbjct: 224 MLMMDDNAYGLSKRRVTLSTSGVLPALARLADTMDVSLAVSLHAPNNEVRNQLVPLNRKY 283
Query: 349 KLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
+ L+ R+ L K + + +EYVML G+ND + A +L+ L++GIP KINLI FN
Sbjct: 284 PIQELMAVCRQFLAKKTTERNHITWEYVMLEGINDKDEHAHQLVKLLKGIPSKINLIPFN 343
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
P +++ +++ ++ FR+ILA AG TV R +RG+D AACGQL
Sbjct: 344 PFPETRYKRSSNNRIHRFRDILAAAGYTVITRKTRGEDIDAACGQLA 390
>gi|117926273|ref|YP_866890.1| radical SAM protein [Magnetococcus marinus MC-1]
gi|205829786|sp|A0LBZ1.1|RLMN_MAGSM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117610029|gb|ABK45484.1| 23S rRNA m(2)A-2503 methyltransferase [Magnetococcus marinus MC-1]
Length = 356
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 204/334 (61%), Gaps = 8/334 (2%)
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 193
+P +A LW L+ A DE+ L+ DF++ LS + + S DGT K
Sbjct: 27 KPFRARQLWSWLHVK--LAQHLDEMSDLSIDFRRKLSALSTPLRPEVSTHQISRDGTEKW 84
Query: 194 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAV 253
L L DG IETV IP + R T+C+SSQVGC ++C FC+TG G R+LT +EIV+Q +
Sbjct: 85 LLRLSDGQQIETVYIPEDE-RGTLCISSQVGCTLSCPFCHTGAQGFARNLTPSEIVQQVL 143
Query: 254 FARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP 313
FARR L++ +TN+V MGMGEPL+N E V A I++ + GL F RKVT+ST+GL+P
Sbjct: 144 FARRTLAARDKRVTNIVLMGMGEPLYNYEAVRDAVLILLDDSGLAFGTRKVTLSTAGLLP 203
Query: 314 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL-GLLIETLREELHFKNNYKVLFE 372
+++Q E LA+SL+A D +R+ ++P+N+KY L L TLR L K+ +V +E
Sbjct: 204 KMEQAGRELGVNLAISLHAVRDTLRDELVPLNKKYNLQALRAATLRYPL--KSGRRVTWE 261
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
YVML GVNDS DDA+ + ++ IP KINLI FNP G + ++ ++ F+ IL AG
Sbjct: 262 YVMLHGVNDSEDDARLFVSFLKDIPSKINLIPFNPWPGVPYQSSSMTRIAAFQKILYQAG 321
Query: 433 CTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVP 466
+R RG+D AACGQL GA+Q R P
Sbjct: 322 FVTVIRDRRGEDIDAACGQL--KGAVQGARPRPP 353
>gi|163784065|ref|ZP_02179018.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880664|gb|EDP74215.1| hypothetical protein HG1285_12252 [Hydrogenivirga sp. 128-5-R1-1]
Length = 355
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/347 (41%), Positives = 213/347 (61%), Gaps = 11/347 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
+V LK ++F EL+ WV+ + +A + K LY + ++ DE+ L+KD + L E
Sbjct: 2 EKVNLKDLNFKELENWVKDKNWHKFRAKQISKWLYNKKVSSY--DEMTDLSKDIRNYLKE 59
Query: 172 HAEFRALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQ 230
+ EF +L L S DG+ K L+ L DG IE+V IP R T+CVS+QVGCA+ C
Sbjct: 60 NTEFESLKLVSYEKSQIDGSIKFLWRLKDGNTIESVFIP-ERDHNTICVSTQVGCAVGCT 118
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290
FCYT + GL R+LT AEI++Q + +R + +E I+NVVFMGMGEPL N +NV KA I
Sbjct: 119 FCYTTKDGLIRNLTTAEIIDQYLQVQRFVGNE-NRISNVVFMGMGEPLANYDNVRKAVQI 177
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE---SNCALAVSLNATTDEVRNWIMPINRK 347
M + L S RK+T+S+SG++ Q+ + N+ LAVSLNA+ +VR IMPI++
Sbjct: 178 MTDKNMLDLSNRKITISSSGIIAQILKMYNDPEFPQVRLAVSLNASDQKVRESIMPISKT 237
Query: 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV--QGIPCKINLISF 405
+ L++TL L FK Y+++ EYV++ VND+ +DAK+L+ L+ K+NLI F
Sbjct: 238 NTIEDLMKTL-NSLPFKTGYRIMLEYVLIKDVNDTEEDAKKLVKLIGKNKKRYKVNLIPF 296
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NP S + ++++ +F+ IL + F+R S+G D AACGQL
Sbjct: 297 NPFEESDYKRPDEKRVEKFQKILWEHNISAFIRWSKGRDISAACGQL 343
>gi|110677600|ref|YP_680607.1| hypothetical protein RD1_0192 [Roseobacter denitrificans OCh 114]
gi|123066012|sp|Q16DM2.1|RLMN_ROSDO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|109453716|gb|ABG29921.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 394
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 218/366 (59%), Gaps = 20/366 (5%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 155
+++ +P+K V L G++ ++ + + QA M +W+ +Y W
Sbjct: 10 DVHTIPRKLPDGPVNLVGLTRAAMRDALIAEGTPEKQAKMRVGQIWQWIYQ---WGVRDF 66
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D + L+K ++ L E + S DGTRK L + G +E V IP + GR
Sbjct: 67 DLMTNLSKAYRAQLKEKFVVEVPEVVTRQVSEDGTRKYLVRIAGGHEVEVVYIP-DEGRG 125
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS-------I 266
T+CVSSQVGC + C FC+TG L R+LTAAEI+ Q + AR L E+G+ +
Sbjct: 126 TLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLGEWPEIGAPKDETRLL 185
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
+N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C L
Sbjct: 186 SNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQL 245
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
AVS +ATTD+VR+ ++PIN+++ + +L+E LR N+ ++ FEYVML GVNDS +DA
Sbjct: 246 AVSFHATTDDVRDTLVPINKRWNIEVLLEALRAYPKVSNSERITFEYVMLHGVNDSDEDA 305
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+RL+ L+ GIP KINLI FN G+ + +++ ++ F +I+ AG +R RG+D M
Sbjct: 306 RRLVKLIDGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIM 365
Query: 447 AACGQL 452
AACGQL
Sbjct: 366 AACGQL 371
>gi|29654554|ref|NP_820246.1| radical SAM protein [Coxiella burnetii RSA 493]
gi|154706747|ref|YP_001424689.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
gi|161830060|ref|YP_001597102.1| radical SAM protein [Coxiella burnetii RSA 331]
gi|81628860|sp|Q83C77.1|RLMN_COXBU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829741|sp|A9KFV0.1|RLMN_COXBN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829742|sp|A9NDW2.1|RLMN_COXBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|29541821|gb|AAO90760.1| radical SAM family enzyme [Coxiella burnetii RSA 493]
gi|154356033|gb|ABS77495.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
gi|161761927|gb|ABX77569.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 331]
Length = 370
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/344 (44%), Positives = 206/344 (59%), Gaps = 10/344 (2%)
Query: 113 RVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L +S ELQ ++ S +R Q L+ W G ++ TD L+K F++ L
Sbjct: 4 KINLLNLSEPELQGFIASQGQPLYRATQ-LLQWIHQRGVTDFSLMTD----LSKPFRQQL 58
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
SE + R L S+DGT K LF L D IETV IP +R R T+CVSSQVGCA+NC
Sbjct: 59 SEASFVRVPELALERVSADGTHKWLFRLADNNKIETVFIP-DRKRGTLCVSSQVGCALNC 117
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 289
FC TG+ G R+LT AEI+ Q A RLL S ITNVV MGMGEPL N E V+ A +
Sbjct: 118 SFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPY-KITNVVMMGMGEPLLNYEAVVAAMH 176
Query: 290 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349
+M+H+ S +VT+STSG++P +++ ES +LAVSL+A D +RN ++P+N+KY
Sbjct: 177 LMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKYS 236
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
L LI R+ + V FEYVM+ G+ND DAK+LI L+ +PCKINLI FN
Sbjct: 237 LDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLADVPCKINLIPFNSFQ 296
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
G+ + +T+ + F+ L AG +R +RGDD ACGQL
Sbjct: 297 GTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLA 340
>gi|408420795|ref|YP_006762209.1| ribosomal RNA large subunit methyltransferase N RlmN [Desulfobacula
toluolica Tol2]
gi|405108008|emb|CCK81505.1| RlmN: ribosomal RNA large subunit methyltransferase N
[Desulfobacula toluolica Tol2]
Length = 346
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 209/343 (60%), Gaps = 16/343 (4%)
Query: 119 MSFT--ELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKMLSEHA 173
++FT +L W+ + RP +A ++K +Y DE E L+K +K L++H
Sbjct: 5 LNFTRDDLGVWLDNKGIRPFRAGQIFKWIY-----IRQADEFEQMTDLSKALRKTLADHF 59
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
L L+ L S+DGT K L L DG +E+V+IP + T+CVSSQVGCA NCQFC
Sbjct: 60 LIERLILEKYLVSADGTEKFLHQLVDGQHVESVLIPA-KDHFTLCVSSQVGCAQNCQFCL 118
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSS---EVGSITNVVFMGMGEPLHNVENVIKAANI 290
T + GL R+L+ EI+ Q AR L + ++N+VFMGMGEPL N +N++KA I
Sbjct: 119 TAKGGLVRNLSVCEIISQVRDARYYLIQKGIDPLKLSNIVFMGMGEPLANYKNLLKALKI 178
Query: 291 MVH-EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349
+ + GL F+ R+VTVST GLVP++ Q +++ LAVSLNATTD++R+ +MPIN KY
Sbjct: 179 ITDGDYGLKFATRRVTVSTCGLVPKITQLGLDTDVNLAVSLNATTDKMRSSLMPINNKYS 238
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
L L+E R K K+ FEY+++ GVNDS DDA RL+ L+ I K+NLI FN H
Sbjct: 239 LSQLLEACRT-FAMKPRNKITFEYILMKGVNDSKDDALRLVKLLTPIKAKVNLIPFNEHD 297
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S F+ + ++ +F IL T R S+GDD +AACGQL
Sbjct: 298 KSDFSRPSKIEVSDFLQILLDRNLTAITRKSKGDDILAACGQL 340
>gi|84683986|ref|ZP_01011888.1| radical SAM superfamily protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84667739|gb|EAQ14207.1| radical SAM superfamily protein [Rhodobacterales bacterium
HTCC2654]
Length = 394
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 210/363 (57%), Gaps = 21/363 (5%)
Query: 100 GGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE 159
G N+ L + G R L E Q R GQ +W+ +Y + ++
Sbjct: 23 GKPNLVGLTRDGLRDALIAAGTPEKQA-----KMRVGQ---VWQWIYQKGVRDFA--DMT 72
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
L+KD++ +L +H E R L S+DGTRK L + G +E V IP R T+CV
Sbjct: 73 NLSKDYRALLDQHFEIRVPELVSKQVSTDGTRKYLVRIAGGHEVEVVYIP-EEDRGTLCV 131
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----------ITNV 269
SSQVGC + C FC+TG L R+LTA EIV Q + AR L V + ++N+
Sbjct: 132 SSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMMARDDLEDWVPAGKGMGERPRLVSNI 191
Query: 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVS 329
V MGMGEPL+N + V A I + +G+ S R++T+STSG+VP++ + E C LA+S
Sbjct: 192 VLMGMGEPLYNFDAVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIARAGAEIGCMLAIS 251
Query: 330 LNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRL 389
+AT DE R+ ++PIN+K+ + L+ L+E N+ ++ FEYVML GVNDS +DA+RL
Sbjct: 252 FHATDDETRDKLVPINKKWNIEKLLAALKEYPKLSNSERITFEYVMLDGVNDSDEDARRL 311
Query: 390 IGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAAC 449
I L++GIP KINLI FN G+ + +++ ++ F NI+ AG +R RG+D MAAC
Sbjct: 312 IKLIEGIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRTPRGEDIMAAC 371
Query: 450 GQL 452
GQL
Sbjct: 372 GQL 374
>gi|254486932|ref|ZP_05100137.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
gi|214043801|gb|EEB84439.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
Length = 391
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/305 (45%), Positives = 190/305 (62%), Gaps = 10/305 (3%)
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTT 216
E+ L+K F+ L+E + S DGTRK L + G +E V IP + GR T
Sbjct: 68 EMTNLSKAFRAELAEKFVIEVPEVVTKQVSEDGTRKYLVRIAGGHEVEVVYIPED-GRGT 126
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV--GSIT------- 267
+CVSSQVGC + C FC+TG L R+LTAAEI+ Q + AR L G+IT
Sbjct: 127 LCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMVARDDLDEWPVPGTITEAPRLLS 186
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C LA
Sbjct: 187 NIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCQLA 246
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
VS +ATTDEVR+ ++PIN+++ + LIE LR N+ ++ FEYVML GVNDS DA
Sbjct: 247 VSFHATTDEVRDKLVPINKRWNIAELIEALRSYPKVSNSERITFEYVMLNGVNDSDADAY 306
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RLI L++GIP KINLI FN G+ +T +++ ++ F I+ AG +R RG+D MA
Sbjct: 307 RLIELIRGIPAKINLIPFNEWPGAPYTRSSNNRIRAFSEIIYKAGYASPVRKPRGEDIMA 366
Query: 448 ACGQL 452
ACGQL
Sbjct: 367 ACGQL 371
>gi|374623911|ref|ZP_09696405.1| radical SAM protein [Ectothiorhodospira sp. PHS-1]
gi|373943006|gb|EHQ53551.1| radical SAM protein [Ectothiorhodospira sp. PHS-1]
Length = 373
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 205/344 (59%), Gaps = 12/344 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDI--WAHCTDELEGLNKDFKKMLSEHA 173
L GM+ EL + +H +P +A+ + K ++ I +A TD L K + LSEHA
Sbjct: 9 LMGMTREELAGFFVAHGEKPFRAVQVLKWIHQRGITDFAAMTD----LTKGLRAWLSEHA 64
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
E RA + + DGT K L LDDG IETV IP GR T+CVSSQVGCA++C FC
Sbjct: 65 EVRAPGIVMTQAARDGTHKWLLRLDDGNCIETVFIP-EEGRGTLCVSSQVGCALDCSFCS 123
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANI 290
T R G R+LTAAEI+ Q AR L E G ++NVV MGMGEPL N E V+ A ++
Sbjct: 124 TARQGFNRNLTAAEIIGQLHAARGHLQPEEGQSRVVSNVVLMGMGEPLLNFEPVVAAMSL 183
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYK 349
M+ + S R+VT+ST+G+VP L + ALA+SL+A D +R+ ++P+NRKY
Sbjct: 184 MLEDNAYGLSKRRVTLSTAGVVPALDRLRETGLQVALALSLHAPNDALRDQLVPLNRKYP 243
Query: 350 LGLLIETLREELHFKNNY-KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 408
+ ++ R + ++ +V EYV+L G+NDS A+ L L+Q +PCK+NLI FNP
Sbjct: 244 IADVLAACRRYVGNGGHHSRVTVEYVLLDGINDSQAQARELAALLQDVPCKVNLIPFNPF 303
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S++ ++ + FR+IL AG T R RGDD AACGQL
Sbjct: 304 PESRYRRSSGAAIDRFRDILVQAGYTTITRRPRGDDIDAACGQL 347
>gi|296116218|ref|ZP_06834836.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295977324|gb|EFG84084.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 410
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 210/364 (57%), Gaps = 30/364 (8%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDE--LEGLNK 163
VLP G R L+ G+S EL + + +P + LW +Y TD + + K
Sbjct: 42 VLPD-GRRELV-GLSREELTEILLEIGEKPFRTKQLWHWIYHQ----GATDFSCMSSIAK 95
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQ 222
++ L+E + TSSD TRK LF DG ETV IP R R VC+SSQ
Sbjct: 96 PLQEKLAERFVISRPQAATVQTSSDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQ 155
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITN 268
VGC ++C FC+TG GL R+L AAEIV Q + AR RLLS+
Sbjct: 156 VGCTLSCTFCHTGTQGLVRNLGAAEIVGQFMAARDSYGEWPSPRGETPRLLST------- 208
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
+V MGMGEPL+N EN+ KA I++ +G+ S R++T+STSG++P + Q +E LA+
Sbjct: 209 IVLMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGDELGINLAI 268
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKR 388
SL+A D++R+ ++P+NRKY + LI R N ++ FEY+ML GVNDS DA+
Sbjct: 269 SLHAVRDDLRDELVPLNRKYPIADLIAACRRYPAASNARRITFEYIMLRGVNDSEADARE 328
Query: 389 LIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAA 448
L+ L+ GIP K+NLI FNP GS+F P+T E++ F NI+ AG +R+ RG D +AA
Sbjct: 329 LVRLIAGIPAKVNLIPFNPWPGSRFQPSTREQLDRFANIVMDAGFASPIRMPRGRDILAA 388
Query: 449 CGQL 452
CGQL
Sbjct: 389 CGQL 392
>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
Length = 378
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 202/331 (61%), Gaps = 5/331 (1%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
LQ+W+ P +A+ L K ++ ++ D + L K + L+E AE R S
Sbjct: 28 LQEWLAQLGEPPFRAVQLIKWIHQRRVFDF--DRMTDLGKPLRARLAEIAEIRLPSAVFD 85
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
TS+DG RK L LD IETV IP GR T+CVSSQ+GC + C FC TG+ G R+L
Sbjct: 86 RTSADGVRKWLLTLDGDNAIETVFIP-EPGRGTLCVSSQLGCPLACTFCSTGQQGFNRNL 144
Query: 244 TAAEIVEQAVFARRLLSSE--VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
TAAEIV Q +F + L+++ G +TNVVFMGMGEPL N +V+KA+N+MV E + S
Sbjct: 145 TAAEIVGQLLFVTQALAADGVAGRVTNVVFMGMGEPLANFASVLKASNLMVDEHAYNLSR 204
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R+VT+STSG+VP L + S +LAVSL+A D +R+ ++PINRKY + L+ R +
Sbjct: 205 RRVTLSTSGIVPALYRLAEVSRISLAVSLHAPDDALRDELVPINRKYPIAELLAACRNYV 264
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
++++ +EYVML VND+ A+ L L++G+P KINLI FN G+ + + +++
Sbjct: 265 ECTPHHRITWEYVMLDAVNDTDGHAQALARLLKGVPSKINLIPFNAFPGAPYRSSPPQRV 324
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F IL AG +R +RGDD ACGQL
Sbjct: 325 ARFTEILQRAGYITTVRKTRGDDIDGACGQL 355
>gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
Length = 364
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ R L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACRRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDRAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|254439770|ref|ZP_05053264.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307]
gi|198255216|gb|EDY79530.1| radical SAM enzyme, Cfr family [Octadecabacter antarcticus 307]
Length = 394
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 151/368 (41%), Positives = 217/368 (58%), Gaps = 28/368 (7%)
Query: 99 GGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDE- 157
GG NI L + R L G+ TE Q +R + +W+ LY W E
Sbjct: 21 GGPLNIVGLTRDQLRDALIGVGVTEKQAKMRVN--------QVWQWLYH---WGVRDFEV 69
Query: 158 LEGLNKDFKKMLSEH--AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
+ L+KDF+ L+EH E + KD+ S+DGTRK L + G +E V IP + R
Sbjct: 70 MTNLSKDFRTTLAEHFKIELPEVVTKDV--STDGTRKYLVRIAGGHEVEVVYIP-EKDRG 126
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS-------- 265
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L+ E G
Sbjct: 127 TLCISSQVGCTLTCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPEPGQGTGENGPR 186
Query: 266 -ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNC 324
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + +E C
Sbjct: 187 LLSNIVLMGMGEPLYNFENVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIHRTADEIGC 246
Query: 325 ALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFD 384
LA+S + TTDE+R+ ++PIN+K+ L L+E L N+ ++ FEYVML VNDS +
Sbjct: 247 MLAISFHGTTDEIRDKLVPINKKWNLEKLLEALAAYPKVSNSERITFEYVMLKDVNDSDE 306
Query: 385 DAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444
DA+RL+ L++GIP KINLI FN G+ + + +++ F +I+ AG +R RG+D
Sbjct: 307 DARRLVKLIEGIPAKINLIPFNEWPGAPYKRSDADRIKAFADIIYNAGYASPIRRPRGED 366
Query: 445 QMAACGQL 452
MAACGQL
Sbjct: 367 IMAACGQL 374
>gi|339505829|ref|YP_004693249.1| ribosomal RNA large subunit methyltransferase N [Roseobacter
litoralis Och 149]
gi|338759822|gb|AEI96286.1| ribosomal RNA large subunit methyltransferase N [Roseobacter
litoralis Och 149]
Length = 394
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 219/366 (59%), Gaps = 20/366 (5%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 155
+++ +P+K V L G++ ++ + + QA M +W+ +Y W
Sbjct: 10 DVHTIPRKLPDGPVNLVGLTRAAMRDVLIAEGTPEKQAKMRVGQIWQWIYQ---WGVRDF 66
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D + L+K ++ L E + S DGTRK L + G +E V IP + GR
Sbjct: 67 DLMTNLSKAYRAELKEKFVVEVPEVVTRQVSEDGTRKYLVRIAGGHEVEVVYIPED-GRG 125
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS-------I 266
T+CVSSQVGC + C FC+TG L R+LTAAEI+ Q + AR L E+G+ +
Sbjct: 126 TLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVIIARDDLGEWPEIGAPKDETRLL 185
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
+N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C L
Sbjct: 186 SNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAVEIGCQL 245
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
A+S +ATTD+VR+ ++PIN+++ + +L+E LR N+ ++ FEYVML GVNDS +DA
Sbjct: 246 AISFHATTDDVRDKLVPINKRWNIEVLLEALRVYPKVSNSERITFEYVMLHGVNDSDEDA 305
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+RL+ L++GIP KINLI FN G+ + +++ ++ F +I+ AG +R RG+D M
Sbjct: 306 RRLVKLIEGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRGEDIM 365
Query: 447 AACGQL 452
AACGQL
Sbjct: 366 AACGQL 371
>gi|126729978|ref|ZP_01745790.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37]
gi|126709358|gb|EBA08412.1| hypothetical protein SSE37_16408 [Sagittula stellata E-37]
Length = 394
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 209/366 (57%), Gaps = 24/366 (6%)
Query: 99 GGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWA-HCTDE 157
GG N+ L + G R L M E Q +R + +W+ +Y W D
Sbjct: 20 GGKINLVGLTRAGLRDALLAMGTPEKQVKMRVN--------QVWQWVY---FWGVRDFDS 68
Query: 158 LEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
+ L KD++ L E + S+DGTRK L + G +ETV IP R T+
Sbjct: 69 MTNLAKDYRAKLDATFEIALPEIVSKQVSADGTRKYLVRIAGGHEVETVYIP-EEDRGTL 127
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS---------I 266
CVSSQVGC + C FC+TG L R+LTA EIV Q + AR L E G+ +
Sbjct: 128 CVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLGEWPEPGTGTGEQGPRLL 187
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
+N+V MGMGEPL+N +NV A I + +GL S R++T+STSG+VP++ + E C +
Sbjct: 188 SNIVLMGMGEPLYNFDNVRDAMKIAMDHEGLSMSRRRITLSTSGVVPEIAKCAEEIGCLM 247
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
AVS +ATTDEVRN ++PIN+++ + L++ LRE N+ ++ FEYVML VNDS +DA
Sbjct: 248 AVSFHATTDEVRNKLVPINKRWNIATLLDALREYPRLSNSERITFEYVMLKDVNDSDEDA 307
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+RL+ L+ GIP KINLI FN GS + + ++ F +I+ AG +R RG+D M
Sbjct: 308 RRLVRLIAGIPAKINLIPFNEWPGSPYERSDWSRIERFADIVYKAGYASPIRTPRGEDIM 367
Query: 447 AACGQL 452
AACGQL
Sbjct: 368 AACGQL 373
>gi|407798378|ref|ZP_11145285.1| hypothetical protein OCGS_0358 [Oceaniovalibus guishaninsula
JLT2003]
gi|407059339|gb|EKE45268.1| hypothetical protein OCGS_0358 [Oceaniovalibus guishaninsula
JLT2003]
Length = 382
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 147/379 (38%), Positives = 216/379 (56%), Gaps = 29/379 (7%)
Query: 84 PQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWK 143
P+ P+AT G N+ L + G R L E R R GQ +W+
Sbjct: 5 PRKPVAT--------DGSTNLVGLTRDGLRDALIAAGTPE-----RQAKMRAGQ---VWQ 48
Query: 144 RLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVI 203
+Y + + + L K ++ ML++H + S+DGTRK L + G +
Sbjct: 49 WIYQKGVREF--EAMTNLAKPYRAMLADHFVIEVPQVVRREVSADGTRKYLLRIAGGHEV 106
Query: 204 ETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---- 259
ETV IP GR T+C+SSQVGC + C FC+TG L R+LT AEIV Q + AR L
Sbjct: 107 ETVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQRLVRNLTPAEIVGQIMVARDDLGEWP 165
Query: 260 ------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP 313
E ++N+V MGMGEPL+N E V I + +G+ S R++T+STSG+VP
Sbjct: 166 EPGRNPKDETRLLSNIVLMGMGEPLYNFEAVRDGMRIAMDPEGISLSRRRITLSTSGVVP 225
Query: 314 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 373
++ + +E C LAVS +ATTD+VR+ ++PIN+++ + L++ LR N+ ++ FEY
Sbjct: 226 EIARAADEIGCLLAVSFHATTDDVRDRLVPINKRWNIESLLDALRAYPRLSNSERITFEY 285
Query: 374 VMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGC 433
VML G+NDS DDA+RL+ L++GIP KINLI FN G+ + +++ ++ F +I+ AG
Sbjct: 286 VMLDGINDSDDDARRLVKLIEGIPAKINLIPFNEWPGAPYRRSSNNRIRAFADIVYKAGY 345
Query: 434 TVFLRLSRGDDQMAACGQL 452
+R RG+D MAACGQL
Sbjct: 346 ASPIRTPRGEDIMAACGQL 364
>gi|51245787|ref|YP_065671.1| hypothetical protein DP1935 [Desulfotalea psychrophila LSv54]
gi|81641926|sp|Q6ALW1.1|RLMN_DESPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|50876824|emb|CAG36664.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 362
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 215/352 (61%), Gaps = 17/352 (4%)
Query: 112 SRVLLKGMSFTELQQWVR---SHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
++ LK +S +L ++ AFR G+ +M W LY ++ +++ L K F+K+
Sbjct: 10 EKIDLKNLSQDQLVEFAEKLGQPAFR-GRQIMSW--LYRPEVRDF--EQMTDLAKVFRKL 64
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L+E++ F I + DG K F L DG VIETV+IP R T+C+SSQVGCAM
Sbjct: 65 LAENSFFSHFDDPIIERAKDGCVKFGFRLHDGHVIETVLIP-EPDRNTLCISSQVGCAMK 123
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHNV 281
C FC TG MG R+LT +EIV Q AR L++E +TNVV+MGMGEPL+N+
Sbjct: 124 CTFCMTGGMGFTRNLTPSEIVNQVCAARDFLANEPADKLIGPDRVTNVVYMGMGEPLNNL 183
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
ENV+ + +I+ ++GL + R++TVST G+V + + E+ LA+SL+A D+ R+ +
Sbjct: 184 ENVLTSISILTEQKGLDLTGRRITVSTCGIVANMARLGQEAPVNLAISLHAVDDKTRDML 243
Query: 342 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
MP+N +Y L L+E R K +++FEY+MLAG+NDS +A+ L +Q IPCKIN
Sbjct: 244 MPVNNRYPLDELLEACRTYPMGKRR-RIMFEYIMLAGINDSDTEARTLARKLQEIPCKIN 302
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
LI +N G + ++++ F+NIL A +VF+R SRG+D AACGQL
Sbjct: 303 LIPYNESPGLPYKSPGMKRILSFQNILREANYSVFIRNSRGEDIAAACGQLA 354
>gi|254462169|ref|ZP_05075585.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium HTCC2083]
gi|206678758|gb|EDZ43245.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium
HTCC2083]
Length = 391
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 199/334 (59%), Gaps = 17/334 (5%)
Query: 129 RSHAFRPGQALMLWKRLYGDDIWAHCT-DELEGLNKDFKKMLSEHAEFRALSLKDILTSS 187
+ R GQ +W+ +Y W DE+ L+K ++ L E + S
Sbjct: 45 KQAKMRVGQ---IWQWIYQ---WGKRDFDEMTNLSKTYRAELGEKFVIEVPEVVTRQVSE 98
Query: 188 DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
DGTRK L + G +E V IP + GR T+CVSSQVGC + C FC+TG L R+LTA E
Sbjct: 99 DGTRKYLVKIAGGHEVEVVYIPED-GRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGE 157
Query: 248 IVEQAVFARRLLS---------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 298
I+ Q + AR L+ E+ ++N+V MGMGEPL+N ENV A I + +G+
Sbjct: 158 IIGQVMIARDDLNEWPEQGAPKDEIRLLSNIVLMGMGEPLYNFENVRDAMKIAMDAEGIQ 217
Query: 299 FSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
S R++T+STSG+VP++ + E C LA+S +ATTDEVR+ ++PIN+++ + L+E LR
Sbjct: 218 LSRRRITLSTSGVVPEIARTAEEIGCQLAISFHATTDEVRDKLVPINKRWNIAELVEALR 277
Query: 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
N+ ++ FEYVML GVND+ DA RLI L++GIP KINLI FN G+ + ++
Sbjct: 278 AYPRVSNSERITFEYVMLDGVNDTDADAHRLIKLIEGIPAKINLIPFNEWPGAPYKRSSG 337
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ F +I+ AG +R RG+D MAACGQL
Sbjct: 338 NRIHRFADIIYKAGYASPIRKPRGEDIMAACGQL 371
>gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
Length = 362
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 200/335 (59%), Gaps = 10/335 (2%)
Query: 124 LQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLK 181
L +W RP +A +M W G +A TD L K + L EHA A +L
Sbjct: 13 LTEWFAEMGERPFRAKQVMRWMHWGGAADFAEMTD----LAKSLRAKLEEHACVGAPALM 68
Query: 182 DILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKR 241
S DGTRK L + G +ETV IP + R T+C+SSQVGCA+ C FC TGR G R
Sbjct: 69 ASQESRDGTRKWLLDVGTGNGVETVFIPESE-RGTLCISSQVGCALECTFCSTGRQGFNR 127
Query: 242 HLTAAEIVEQAVFARRLLSS---EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 298
+LT AEIV Q +A + L + + I+NVV MGMGEPL N +NV+++ ++M+ + G
Sbjct: 128 NLTTAEIVGQLWWANKALGATPKDERVISNVVMMGMGEPLANYDNVVRSLSVMLDDHGYG 187
Query: 299 FSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
S R+VTVSTSG+VPQ+ + + ALAVSL+A+ D VR+ I+P+N+KY L L+ R
Sbjct: 188 LSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDHVRDQIVPLNKKYPLKDLMAACR 247
Query: 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
L V FEYVML GVND + A+ L+ LV+ +PCK NLI FNP S + ++
Sbjct: 248 RYLVKAPRDFVTFEYVMLDGVNDKAEHARELLKLVEDVPCKFNLIPFNPFPHSGYERSSA 307
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
E + FR+IL AG V +R +RGDD AACGQL
Sbjct: 308 ENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQLA 342
>gi|163745013|ref|ZP_02152373.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
gi|161381831|gb|EDQ06240.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
Length = 393
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/330 (43%), Positives = 199/330 (60%), Gaps = 17/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWA-HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
R GQ +W+ +Y W D + L K ++ L+E + S DGTR
Sbjct: 49 MRVGQ---IWQWIYQ---WGVRDFDSMTNLAKGYRAELAEKFVIEVPEVVTRQESEDGTR 102
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +E V IP GR T+CVSSQVGC + C FC+TG L R+LTAAEI+ Q
Sbjct: 103 KYLVRIAGGHEVEVVYIP-EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQ 161
Query: 252 AVFARRLLSS--EVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
+ AR L E G+ ++N+V MGMGEPL+N ENV A I + +G+ S R
Sbjct: 162 VMVARDDLDEWPETGTRTEEARLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRR 221
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
++T+STSG+VP++ + E C LAVS +ATTDEVRN ++PIN+++ + L++ LR
Sbjct: 222 RITLSTSGVVPEIHRTAAEIGCQLAVSFHATTDEVRNKLVPINKRWNIEELLDALRAYPK 281
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
N+ ++ FEYVML GVNDS +DA RL+ L++GIP KINLI FN GS + +++ ++
Sbjct: 282 VSNSERITFEYVMLKGVNDSDEDAHRLVELIKGIPAKINLIPFNEWPGSPYERSSNNRIR 341
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F +I+ AG +R RG+D MAACGQL
Sbjct: 342 AFADIVYNAGYASPVRKPRGEDIMAACGQL 371
>gi|406945406|gb|EKD76900.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium]
Length = 374
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/298 (45%), Positives = 186/298 (62%), Gaps = 1/298 (0%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D + +K F++ L + L S DGTRK LF L DG IETV IP + R
Sbjct: 46 DLMTNFSKVFREKLKQETCISKLETITDQESRDGTRKFLFRLYDGSAIETVFIP-EKTRG 104
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG 275
T+CVSSQVGCA+NC FC TG+ G R+L+ AEI+ Q AR L + ITNVV MGMG
Sbjct: 105 TLCVSSQVGCALNCSFCSTGKEGFNRNLSLAEIIGQLFLARDKLKNTPHQITNVVMMGMG 164
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + VI A +M+H+ S +VT+STSG+VPQL QF +S +LAVSL+A T+
Sbjct: 165 EPLLNYQPVIDAMELMMHDLAYGLSKYRVTLSTSGVVPQLLQFKKDSIASLAVSLHAPTN 224
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
E+R ++PIN+KY L +L+ R+ + ++FEYVML G+NDS AK+LI L+
Sbjct: 225 ELREQLVPINKKYPLEVLMPVCRDYFPTDSKRCIVFEYVMLKGINDSLLQAKQLIRLLDN 284
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+PCKINLI FNP + + + + ++ F++ L AG ++R +RGDD ACGQL
Sbjct: 285 MPCKINLIPFNPFPKTDYVCSDMQTILAFQDRLTKAGVKTWVRKTRGDDIDGACGQLA 342
>gi|338997184|ref|ZP_08635885.1| hypothetical protein GME_04267 [Halomonas sp. TD01]
gi|338765781|gb|EGP20712.1| hypothetical protein GME_04267 [Halomonas sp. TD01]
Length = 394
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 215/349 (61%), Gaps = 14/349 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
R L GMS +++ + S FR Q LM W G D +A T+ L+K ++ L
Sbjct: 28 RQNLLGMSREQMEDFFLSIGEKKFRAAQ-LMKWIHQEGSDDFAAMTN----LSKPLREKL 82
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG-RTTVCVSSQVGCAMN 228
+ AE R ++ TSSDGTRK + ++DG +ETV+IP G R T+CVSSQVGC+++
Sbjct: 83 ARLAEIRGPAVVYEGTSSDGTRKWVLEVEDGSYVETVLIPAENGKRRTLCVSSQVGCSLD 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENV 284
C FC TG+ G +R+LTAAEI+ Q A+R + + +TNVV MGMGEPL N +NV
Sbjct: 143 CSFCSTGKQGFQRNLTAAEIIGQVWVAQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +M+ + G S R+VT+STSG+VP + + +E + +LA+SL+A+TDE+RN ++PI
Sbjct: 203 VPAMKLMLDDNGYGLSKRRVTLSTSGVVPMIDKLGDEIDVSLAISLHASTDELRNELVPI 262
Query: 345 NRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
NRKY + L++ L +N +V EY ++ VND + A++L L++ +PCKINLI
Sbjct: 263 NRKYNIRALLDACHRYLSKCPDNRQVTIEYTLIRDVNDQQEHAEQLAALLKELPCKINLI 322
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + + +++ F+ L G +R++RG+D AACGQL
Sbjct: 323 PFNPFPNSGYEKPSRNQVMRFQQWLYDLGYNATVRVTRGEDIDAACGQL 371
>gi|260429104|ref|ZP_05783081.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45]
gi|260419727|gb|EEX12980.1| radical SAM enzyme, Cfr family [Citreicella sp. SE45]
Length = 398
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 210/365 (57%), Gaps = 22/365 (6%)
Query: 99 GGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDEL 158
GG NI L + R L M E Q +R + +W+ +Y + +
Sbjct: 21 GGKLNIVGLTRDALRAALIEMGTPEKQAKMRVN--------QVWQWIYHWGVRDFSV--M 70
Query: 159 EGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVC 218
L KD++ L H E + S+DGTRK L + G +ETV IP GR T+C
Sbjct: 71 TNLAKDYRAKLEAHFEIALPEIVSKQVSADGTRKYLVRIAGGHEVETVYIP-EEGRGTLC 129
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSEVGS--IT 267
+SSQVGC + C FC+TG L R+LTA EIV Q + AR L + E G ++
Sbjct: 130 ISSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMLARDDLDEWPAPGTGTGEDGPRLLS 189
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N +NV A I++ +G+ S R++T+STSG+VP++ + E C +A
Sbjct: 190 NIVLMGMGEPLYNFDNVRDAMKIVMDGEGIALSRRRITLSTSGVVPEIARCAEEIGCLMA 249
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
VS +ATTDEVRN ++PIN+++ + L+ LRE N+ ++ FEYVML VNDS DA+
Sbjct: 250 VSFHATTDEVRNRLVPINKRWNIEELLNALREYPRLSNSERITFEYVMLKDVNDSDADAR 309
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RL+ L++GIP KINLI FN G+ + + E++ F +I+ AG +R RG+D MA
Sbjct: 310 RLVNLIKGIPAKINLIPFNEWPGAPYERSDWERIERFADIVHKAGYASPIRTPRGEDIMA 369
Query: 448 ACGQL 452
ACGQL
Sbjct: 370 ACGQL 374
>gi|49473706|ref|YP_031748.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse]
gi|81647409|sp|Q6G1C0.1|RLMN_BARQU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49239209|emb|CAF25526.1| hypothetical protein BQ00190 [Bartonella quintana str. Toulouse]
Length = 409
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 157/371 (42%), Positives = 211/371 (56%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
NV+ KK S+ L G+S E+ + +++ Q M LW LY + DE+
Sbjct: 20 NVVVKKRSKRSLIGLSQNEMAEALKAIGVPEQQTRMRVRQLWHWLYVRGV--SNFDEILN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML---DDG--LVIETVVIPCNRGRT 215
++K ++ML H + S DGTRK L +DG + IETV IP GR
Sbjct: 78 ISKPIREMLKNHFSIARPEIVGEQISKDGTRKWLLRFPAREDGRPVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FCYTG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPNRTTPDGAIVPV 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEVVKKALLIASDGDGLSLSKRRITLSTSGVVPEIVRAGEE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LAVSL+A D +R+ ++PIN+KY L LLI+ R N ++ FEYVML G+ND
Sbjct: 257 IGVMLAVSLHAVHDTLRDMLVPINKKYPLALLIDACRNYPGLSNAKRITFEYVMLKGIND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|359787063|ref|ZP_09290134.1| hypothetical protein MOY_13915 [Halomonas sp. GFAJ-1]
gi|359295713|gb|EHK59976.1| hypothetical protein MOY_13915 [Halomonas sp. GFAJ-1]
Length = 394
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 216/349 (61%), Gaps = 14/349 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
R L GMS +++ + S FR Q +M W G D +A T+ L+K ++ L
Sbjct: 28 RQNLLGMSREQMEAFFLSIGEKKFRAAQ-VMKWIHQEGSDDFAAMTN----LSKPLREKL 82
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG-RTTVCVSSQVGCAMN 228
++ AE R S+ TSSDGTRK + ++DG +ETV+IP G R T+CVSSQVGC+++
Sbjct: 83 AKVAEIRGPSVVYEGTSSDGTRKWVLEVEDGSYVETVLIPAENGKRRTLCVSSQVGCSLD 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENV 284
C FC TG+ G +R+LTAAEI+ Q A+R + + +TNVV MGMGEPL N +NV
Sbjct: 143 CSFCSTGKQGFQRNLTAAEIIGQVWVAQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +M+ + G S R+VT+STSG+VP + + +E + +LA+SL+A+TDE+RN ++PI
Sbjct: 203 VPAMKLMLDDNGYGLSKRRVTLSTSGVVPMIDKLGDEMDVSLAISLHASTDELRNELVPI 262
Query: 345 NRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
NRKY + L++ L +N +V EY ++ +ND + A++L L++ +PCKINLI
Sbjct: 263 NRKYNIRALLDACHRYLSKCPDNRQVTIEYTLIRDINDQQEHAEQLAALLKELPCKINLI 322
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + + +++ F+ L G +R++RG+D AACGQL
Sbjct: 323 PFNPFPNSGYETPSRNQVMRFQQWLYDQGYNATVRVTRGEDIDAACGQL 371
>gi|340362818|ref|ZP_08685184.1| cfr family radical SAM enzyme [Neisseria macacae ATCC 33926]
gi|339886976|gb|EGQ76579.1| cfr family radical SAM enzyme [Neisseria macacae ATCC 33926]
Length = 364
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L S+DGTRK
Sbjct: 25 FRAKQ-VMRWIHQAG----AQSFDEMTDLAKSLRLKLNEQASVDVPKLMMAQESADGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N ENV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND A+ LI LV+ +PCK NLI FNP S + +T+E + FR+IL
Sbjct: 259 TFEYVMLDGVNDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|359409509|ref|ZP_09201977.1| radical SAM enzyme, Cfr family [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676262|gb|EHI48615.1| radical SAM enzyme, Cfr family [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 368
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 148/349 (42%), Positives = 205/349 (58%), Gaps = 14/349 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDE---LEGLNKDFKKM 168
+R L G+S TEL++ V +A LW+ +W H E + L K + +
Sbjct: 8 ARTPLLGLSLTELEEQVSRLQLPRFRARQLWRW-----VWRHGLTEFADMTDLGKPVQTL 62
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
LS+H S+ SSDGT K L L DG ETV IP + R T+C+SSQVGC +
Sbjct: 63 LSQHFHADRPSVTRRQDSSDGTIKWLIRLADGQEAETVYIP-DSDRGTLCISSQVGCTLT 121
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-----ITNVVFMGMGEPLHNVEN 283
C FC+TG L R+L+ EI Q + A L +TN+V MGMGEPL+N +N
Sbjct: 122 CSFCHTGTQRLVRNLSVDEICGQVLLAMDELGDWPAGKPDRRLTNIVLMGMGEPLYNYDN 181
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V KA ++ +G+ S R+VT+STSG+VP++K+ +E LA+SL+A D++R+ ++P
Sbjct: 182 VAKALKTIMSGEGIALSKRRVTLSTSGIVPEIKKCGDELGVNLAISLHAVRDDLRDQLVP 241
Query: 344 INRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
INRKY L LI+ +R N +V +EYVMLAGVNDS DAK L+ L++GIP KINLI
Sbjct: 242 INRKYNLQTLIDAVRAYPGLSNARRVTWEYVMLAGVNDSEADAKALVQLIKGIPSKINLI 301
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP G+ + + DE + +F I+ AG +R RG D +AACGQL
Sbjct: 302 PFNPWPGTDHSCSNDEAIDKFAKIVMKAGYASPVRTPRGRDILAACGQL 350
>gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
Length = 364
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 153/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L S+DGTRK
Sbjct: 25 FRAKQ-VMRWIHQAG----AQSFDEMTDLAKSLRLKLNEQASVDVPKLMMAQESTDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N ENV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND A+ LI LV+ +PCK NLI FNP S + +T+E + FR+IL
Sbjct: 259 TFEYVMLDGVNDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|206890968|ref|YP_002247985.1| radical SAM protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742906|gb|ACI21963.1| radical SAM enzyme, Cfr family [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 342
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 207/321 (64%), Gaps = 10/321 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
+R Q + + + D I +++ +K ++ SE ++L D S DGT K
Sbjct: 26 YRSKQIVQWIYKKFVDSI-----NDITEWSKSLRERFSEKYYIGRINLFDKRISIDGTIK 80
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L+ L+DG IE+V+I ++ R T+CVSSQVGC + C+FC TG++GLKR+L A EIV+Q
Sbjct: 81 FLWELEDGEKIESVLI-SDKDRLTLCVSSQVGCMLKCKFCLTGKIGLKRNLKAWEIVDQY 139
Query: 253 VFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
+ +++ E ITN+VFMGMGEPL N ENV++A + + + FSP ++T+ST+G++
Sbjct: 140 IQVSKIIQKENRKITNIVFMGMGEPLLNFENVVEA--LWRLKDLILFSPSRITLSTAGII 197
Query: 313 PQLKQF-LNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371
P +K+ LA+SLNAT ++ R+++MPIN+KY L LI+TLR + K +++ F
Sbjct: 198 PAIKELPYKAPAIKLAISLNATDNKTRSYLMPINKKYPLHELIKTLR-DYPLKPRHRITF 256
Query: 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431
EY+++ G+N S DA RL L++GIP KINLI FNP G +F D +++ F+ ILA
Sbjct: 257 EYILIKGINCSEKDAYRLSELLKGIPSKINLIPFNPWEGCEFERPEDNEILNFQEILAAR 316
Query: 432 GCTVFLRLSRGDDQMAACGQL 452
G +VF+R S+G D +AACGQL
Sbjct: 317 GYSVFIRKSKGTDILAACGQL 337
>gi|384082129|ref|ZP_09993304.1| radical SAM protein [gamma proteobacterium HIMB30]
Length = 376
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 210/350 (60%), Gaps = 15/350 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
RV L G++ +++ + S FR G ++ W G + D++ L+K + L
Sbjct: 8 RVNLLGLTLPKMEAFFLSIGEKKFR-GAQMVKWIHQQGVTDF----DQMTNLSKSLRDQL 62
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ AE R + S DGTRK L +D G +ETV IP R T+CVSSQVGC+++C
Sbjct: 63 KDIAEVRPPRVTFQGDSEDGTRKWLMEVDGGSKVETVYIP-EGDRGTLCVSSQVGCSLDC 121
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARR-----LLSSEVGSITNVVFMGMGEPLHNVENV 284
FC TG+ G ++LTAAEI+ Q A + + S+ S+TNVV MGMGEPL N E V
Sbjct: 122 SFCSTGKQGFNKNLTAAEIIGQVFLAAKSFGLPVKDSQKRSVTNVVMMGMGEPLLNFEPV 181
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A ++M+ +Q S R+VT+STSG+VP L + S+ ALAVSL+A DE+RN ++PI
Sbjct: 182 VDAMSLMLEDQAYGLSKRRVTLSTSGVVPHLNELARVSDVALAVSLHAPNDELRNELVPI 241
Query: 345 NRKYKLGLLIETLREELH-FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
NRKY + +L +++R L +N V FEY ML GVNDS + A+ L L + I CKINLI
Sbjct: 242 NRKYPIAVLFDSIRNYLDGLSDNRSVTFEYTMLKGVNDSDELARELSTLAKTIRCKINLI 301
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
FNP G+++ ++ ++ F+ IL G V +R +RGDD AACGQL
Sbjct: 302 PFNPFPGTRYEVSSRNRIYAFQRILLNDGHVVTVRKTRGDDIDAACGQLA 351
>gi|114769816|ref|ZP_01447426.1| radical SAM superfamily protein [Rhodobacterales bacterium
HTCC2255]
gi|114549521|gb|EAU52403.1| radical SAM superfamily protein [alpha proteobacterium HTCC2255]
Length = 390
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 138/321 (42%), Positives = 204/321 (63%), Gaps = 15/321 (4%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFML 197
+W+ LY A +E+ L+KDF+ +L ++ A++ +I+T S DGTRK L +
Sbjct: 55 IWQWLYVKG--AQNFEEMTNLSKDFRNLLVQNF---AITRPEIVTRQISKDGTRKYLLRV 109
Query: 198 DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR 257
G +E V IP + R T+C+SSQ+GC + C FC+TG L R+LT AEIV Q + AR
Sbjct: 110 TGGHEVEAVYIP-EKDRGTLCISSQIGCTLTCTFCHTGTQKLVRNLTPAEIVGQILIARD 168
Query: 258 LL------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL 311
L + + +++N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+
Sbjct: 169 DLDEWGKDAGQKRNVSNIVLMGMGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGV 228
Query: 312 VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371
VP++ + +E C LA+S +ATTDEVR+ ++PINRK+K+ L+E R N+ ++ F
Sbjct: 229 VPEIIRTGSEIGCMLAISFHATTDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITF 288
Query: 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431
EYVML +NDS +DA+RL+ L+ GIP KINLI FNP GS + + ++ F +I+ A
Sbjct: 289 EYVMLKNINDSDEDARRLVDLISGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKA 348
Query: 432 GCTVFLRLSRGDDQMAACGQL 452
G +R RG+D MAACGQL
Sbjct: 349 GYASPIRRPRGEDIMAACGQL 369
>gi|83594658|ref|YP_428410.1| hypothetical protein Rru_A3329 [Rhodospirillum rubrum ATCC 11170]
gi|123753053|sp|Q2RP22.1|RLMN_RHORT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83577572|gb|ABC24123.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length = 428
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 204/354 (57%), Gaps = 13/354 (3%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKD 164
+P+ + V L G+S E+ +R +P +A LW +Y G+ ++ T L
Sbjct: 41 IPQNPAPVNLVGLSREEIAALLRDMGEKPFRAKQLWHWVYHRGETDFSAMTT----LGTP 96
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L+E + S DGTRK L DG ETV IP + R +CVSSQVG
Sbjct: 97 LRAKLAETCVVARPHVVREQRSEDGTRKWLLRFPDGNEAETVYIPED-DRGALCVSSQVG 155
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL------SSEVGSITNVVFMGMGEPL 278
C + C+FC+TG L R+LTA EIV Q + AR + E ++N+V MGMGEPL
Sbjct: 156 CTLTCRFCHTGTQLLVRNLTAHEIVGQFMAARDAYGEWPSPTDESRQLSNIVLMGMGEPL 215
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
+N +NV KA I++ +G+ S R++T+STSG+VP +++ E LAVSL+A DE+R
Sbjct: 216 YNYDNVAKAIGILLDNEGIAVSRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAARDEIR 275
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
+ IMPINRKY L L+ RE N ++ FEYVML GVNDS DA+ LI LV+G+PC
Sbjct: 276 DEIMPINRKYPLAELMAACREYPGASNARRITFEYVMLKGVNDSEADARALIKLVEGVPC 335
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
K NLI FNP GS F + F NIL AG T +R+ RG D +AACGQL
Sbjct: 336 KFNLIPFNPWPGSGFECPPIRHIERFANILFEAGYTAPIRMPRGRDILAACGQL 389
>gi|119713561|gb|ABL97613.1| radical SAM superfamily protein [uncultured marine bacterium
EB0_39F01]
Length = 390
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 138/321 (42%), Positives = 204/321 (63%), Gaps = 15/321 (4%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFML 197
+W+ LY A +E+ L+KDF+ +L ++ A++ +I+T S DGTRK L +
Sbjct: 55 IWQWLYVKG--AQNFEEMTNLSKDFRNLLVQNF---AITRPEIVTRQISKDGTRKYLLRV 109
Query: 198 DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR 257
G +E V IP + R T+C+SSQ+GC + C FC+TG L R+LT AEIV Q + AR
Sbjct: 110 TGGHEVEAVYIP-EKDRGTLCISSQIGCTLTCTFCHTGTQKLVRNLTPAEIVGQILIARD 168
Query: 258 LL------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL 311
L + + +++N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+
Sbjct: 169 DLDEWGKDAGQKRNVSNIVLMGMGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGV 228
Query: 312 VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371
VP++ + +E C LA+S +ATTDEVR+ ++PINRK+K+ L+E R N+ ++ F
Sbjct: 229 VPEIIRTGSEIGCMLAISFHATTDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITF 288
Query: 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431
EYVML +NDS +DA+RL+ L+ GIP KINLI FNP GS + + ++ F +I+ A
Sbjct: 289 EYVMLKNINDSDEDARRLVDLISGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKA 348
Query: 432 GCTVFLRLSRGDDQMAACGQL 452
G +R RG+D MAACGQL
Sbjct: 349 GYASPIRRPRGEDIMAACGQL 369
>gi|255261946|ref|ZP_05341288.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62]
gi|255104281|gb|EET46955.1| radical SAM enzyme, Cfr family [Thalassiobium sp. R2A62]
Length = 395
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 215/365 (58%), Gaps = 18/365 (4%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTD 156
+++ +P+K + L G+ ++ + H QA M +W+ +Y + D
Sbjct: 10 DVHTIPRKLPEGPINLVGLRRDAMRDVLIEHGTPEKQAKMRVGQIWQWIYVKGL--RSFD 67
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTT 216
E+ L+KD++ L+E+ + S DGTRK L + G +E V IP GR T
Sbjct: 68 EMTNLSKDYRAKLAENFVIEVPEVVTKQVSEDGTRKYLVRIAGGHEVEVVYIP-EEGRGT 126
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSEVGSIT 267
+C+SSQVGC + C FC+TG L R+LT AEI+ Q + AR L + E ++
Sbjct: 127 LCISSQVGCTLTCSFCHTGTQKLVRNLTPAEIIGQVMVARDDLGEWPEPGTPNDEARLLS 186
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N E V A I + +G+ S R++T+STSG+VP++ + E C LA
Sbjct: 187 NIVLMGMGEPLYNFEGVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLA 246
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
VS +ATTD+VR+ ++PIN+++ + L++ LR N+ ++ FEYVML GVND+ +DA
Sbjct: 247 VSFHATTDDVRDKLVPINKRWNIAELLDALRAYPKVSNSERITFEYVMLDGVNDTDEDAH 306
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RL+ L++GIP KINLI FN G+ + +++ ++ F +I+ AG +R RG+D MA
Sbjct: 307 RLVELIKGIPAKINLIPFNEWPGAPYKRSSNNRIRAFAHIIYKAGYASPIRKPRGEDIMA 366
Query: 448 ACGQL 452
ACGQL
Sbjct: 367 ACGQL 371
>gi|374849841|dbj|BAL52845.1| hypothetical conserved protein [uncultured gamma proteobacterium]
Length = 366
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/346 (43%), Positives = 209/346 (60%), Gaps = 14/346 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
+RV L G+S ++L+++ +P +A + K ++G + E E + K + +
Sbjct: 7 TRVDLLGLSRSKLEEFFARMGEKPFRARQVLKWVHGRGV-----TEFEAMTDLGKALRAR 61
Query: 172 HAEFRALSLKDIL---TSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
E L+L ++ S DGT K L L DG IETV IP R R T+CVSSQVGCA+
Sbjct: 62 LGEIFNLTLPCVVGRQESRDGTVKWLMALADGNCIETVFIPEER-RGTLCVSSQVGCALG 120
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAA 288
C FC T R G R+L+AAEI+ Q +A R L ITNVV MGMGEPL N + V+ AA
Sbjct: 121 CAFCATARQGFSRNLSAAEIIGQVWYAFRQLDCR---ITNVVLMGMGEPLLNFDAVVDAA 177
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+M+ + + R+VTVST+GL P +++ S+ +LAVSL+ATTDE+R+ ++PINRKY
Sbjct: 178 ELMMDDLAYGLAKRRVTVSTAGLAPAIERLAEISDVSLAVSLHATTDELRDLLVPINRKY 237
Query: 349 KLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
L L+ R + K+ FEYVML GVND+ DAKRL L+ +P KINLI FN
Sbjct: 238 PLQRLLAACRRFAGSERQKGRKITFEYVMLQGVNDADADAKRLAKLLSQVPAKINLIPFN 297
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P G+ F + E ++ F++ILA +G +R +RG+D AACGQL
Sbjct: 298 PFPGAPFRCSPPETILRFQSILADSGFLTTVRRTRGEDIAAACGQL 343
>gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
Length = 364
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWIHQAG----AQSFDEMTDLAKSLRLKLNEQASVDVPKLMMAQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +T+E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|385851095|ref|YP_005897610.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
gi|389605577|emb|CCA44494.1| ribosomal RNA large subunit methyltransferase N [Neisseria
meningitidis alpha522]
Length = 364
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|126733857|ref|ZP_01749604.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
gi|126716723|gb|EBA13587.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
Length = 391
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 198/307 (64%), Gaps = 16/307 (5%)
Query: 158 LEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNRGR 214
+ L+KD++ ML AE ++L +++T S DGTRK L + G +E V IP R
Sbjct: 69 MTNLSKDYRAML---AETFVIALPEVVTRQVSDDGTRKYLVRIAGGHEVEVVYIP-ETDR 124
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS------- 265
T+C+SSQVGC + C FC+TG L R+LTAAEI+ Q + AR L E G+
Sbjct: 125 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMIARDDLDEWPEPGTRTEDTRL 184
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 185 LSNIVLMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCQ 244
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LAVS +ATT++VR+ ++PIN+++ + L++ LRE N+ ++ FEYVML GVNDS +D
Sbjct: 245 LAVSFHATTNDVRDRLVPINKRWPISDLLDALREYPKVSNSERITFEYVMLDGVNDSDED 304
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A RLI L++GIP KINLI FN G+ + +++ ++ +F I+ AG +R RG+D
Sbjct: 305 AHRLIKLIEGIPAKINLIPFNEWPGAPYKRSSNNRIRKFSEIIYQAGYASPVRKPRGEDI 364
Query: 446 MAACGQL 452
MAACGQL
Sbjct: 365 MAACGQL 371
>gi|383456472|ref|YP_005370461.1| radical SAM protein [Corallococcus coralloides DSM 2259]
gi|380734155|gb|AFE10157.1| radical SAM protein [Corallococcus coralloides DSM 2259]
Length = 360
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/337 (43%), Positives = 207/337 (61%), Gaps = 13/337 (3%)
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSS-DGTRK 192
RP +A L++ L+ A DE+ L+K ++ L AE L +KD+ S DGT K
Sbjct: 29 RPFRAAQLYRWLH--QRGATSFDEMTDLSKALREKLKVKAEIVPL-VKDLEQRSVDGTIK 85
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
F DG IE+V +P R T+CVS+QVGCAM C FC TG +GLKR+LT EIV Q
Sbjct: 86 YRFKTRDGRFIESVYMPAE-DRKTLCVSTQVGCAMACSFCMTGTLGLKRNLTPGEIVAQV 144
Query: 253 -VFARRLLSSE----VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
R + +E + +TN+VFMGMGEPLHN EN+ A I+ E+G +FS R +TVS
Sbjct: 145 HAVNREVRRNENLETLRPLTNLVFMGMGEPLHNFENLKTALAILQSEEGPNFSHRHITVS 204
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY 367
T GLVP +++F E++ LA+SLNA+TDE R+ MP+NRK+ + L++ R + +
Sbjct: 205 TVGLVPMIERFGQETDVKLAISLNASTDEQRSKTMPVNRKWNIQALLDACR-KFPLRQGR 263
Query: 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNI 427
++ FEYV+L G ND+ +DA RL L++ IP K+NLI +N + G F T +++ EFR I
Sbjct: 264 RITFEYVLLKGFNDTDEDAHRLRELLRDIPAKVNLIPYNENPGLGFQTTGEQRAEEFRAI 323
Query: 428 LAGAGCTVFLRLSRGDDQMAACGQLGN--PGAIQAPL 462
LA A ++R +RG D ACGQL N A +AP+
Sbjct: 324 LAEAHVAAYIRKNRGRDIAGACGQLANRDETAAEAPV 360
>gi|84515768|ref|ZP_01003129.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53]
gi|84510210|gb|EAQ06666.1| radical SAM superfamily protein [Loktanella vestfoldensis SKA53]
Length = 392
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 221/370 (59%), Gaps = 28/370 (7%)
Query: 103 NINVLPKKGSRVL--LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHC 154
++ +P+K + L L GM+ ++ + + QA M +W+ +Y G +A
Sbjct: 11 DVLTIPRKAAEGLPNLVGMTRDGMRDALIAAGTPEKQAKMRVGQIWQWVYHWGVRDFAKM 70
Query: 155 TDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCN 211
T+ L KD++ ML+++ ++L +++T S DGTRK L + G +E V IP
Sbjct: 71 TN----LAKDYRAMLADNF---VVALPEVVTRQVSGDGTRKYLVRIAGGHEVEVVYIP-E 122
Query: 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSE 262
R T+C+SSQVGC + C FC+TG L R+LTAAEI+ Q + AR L E
Sbjct: 123 TDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVLVARDDLGEWPVQGTPKDE 182
Query: 263 VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES 322
V ++N+V MGMGEPL+N ENV A I + G+ S R++T+STSG+VP++ + E
Sbjct: 183 VRLLSNIVLMGMGEPLYNFENVRDAMKIAMDPDGIQLSRRRITLSTSGVVPEIARTAQEI 242
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 382
C LA+S +ATTDEVR+ ++PIN+++ L L++ LR N+ ++ FEYVML GVNDS
Sbjct: 243 GCQLAISFHATTDEVRDKLVPINKRWPLADLLDALRTYPKVSNSERITFEYVMLDGVNDS 302
Query: 383 FDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
DA RLI L+ GIP KINLI FN G+ + +++ ++ F +I+ AG +R RG
Sbjct: 303 DADAHRLIKLIDGIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPIRTPRG 362
Query: 443 DDQMAACGQL 452
+D MAACGQL
Sbjct: 363 EDIMAACGQL 372
>gi|448748166|ref|ZP_21729811.1| Ribosomal RNA large subunit methyltransferase RlmN [Halomonas
titanicae BH1]
gi|445564287|gb|ELY20411.1| Ribosomal RNA large subunit methyltransferase RlmN [Halomonas
titanicae BH1]
Length = 394
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 213/349 (61%), Gaps = 14/349 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
R L GMS +++ + S FR Q LM W G D +A T+ L+K ++ L
Sbjct: 28 RQNLLGMSREQMEAFFLSIGEKKFRAAQ-LMKWIHQEGSDDFAAMTN----LSKALREKL 82
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG-RTTVCVSSQVGCAMN 228
+ AE R + TSSDGTRK + ++DG +ETV+IP G R T+CVSSQVGC+++
Sbjct: 83 ARLAEIRGPGVIYEGTSSDGTRKWVLEVEDGSYVETVLIPAENGKRRTLCVSSQVGCSLD 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENV 284
C FC TG+ G +R+LTAAEI+ Q A+R + + +TNVV MGMGEPL N +NV
Sbjct: 143 CSFCSTGKQGFQRNLTAAEIIGQVWVAQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +M+ + G S R+VT+STSG+VP + + +E + +LA+SL+A+TDE+RN ++PI
Sbjct: 203 VPAMKLMLDDNGYGLSKRRVTLSTSGVVPMIDKLGDEMDVSLAISLHASTDELRNELVPI 262
Query: 345 NRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
NRKY + L++ L +N +V EY ++ VND + A++L L++ +PCKINLI
Sbjct: 263 NRKYNIRALLDACHRYLSKCPDNRQVTIEYTLIKDVNDQQEHAEQLAALLKELPCKINLI 322
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + + +++ F+ L G +R +RG+D AACGQL
Sbjct: 323 PFNPFPNSGYEKPSRNQVMRFQQWLYDLGYNATVRTTRGEDIDAACGQL 371
>gi|288957012|ref|YP_003447353.1| radical SAM enzyme [Azospirillum sp. B510]
gi|288909320|dbj|BAI70809.1| radical SAM enzyme [Azospirillum sp. B510]
Length = 396
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/357 (43%), Positives = 213/357 (59%), Gaps = 16/357 (4%)
Query: 106 VLPKKGS--RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGL 161
VLP + R L G+S EL+ + + +A LW +Y G +A E+ L
Sbjct: 18 VLPATDADGRKNLVGLSREELEAEMLAVGLEKFRARQLWHWIYHRGSTDFA----EMTTL 73
Query: 162 NKDFKKMLSE-HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
K ++ L++ H R + D L S+DGTRK L + DG +E+V IP R T+CVS
Sbjct: 74 AKPVREKLADTHIVARPTVVTD-LKSADGTRKWLLRMPDGQEVESVHIP-EEDRGTLCVS 131
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMG 275
SQVGC + C+FC+TG L R+L AAEIV Q + AR +L + ++N+V MGMG
Sbjct: 132 SQVGCTLTCRFCHTGTQRLVRNLDAAEIVAQVMLARDMLGEWPAPPDGRMLSNIVMMGMG 191
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N +NV KA I++ G+ S R++T+STSG+VP +++ E N LAVSL+A TD
Sbjct: 192 EPLFNYDNVAKALKIVMDGDGISISKRRITLSTSGVVPMMERCGQELNVNLAVSLHAVTD 251
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
E+RN IMPINRKY L L+E R N ++ FEYVML GVND+ DA+ L+ L++G
Sbjct: 252 ELRNIIMPINRKYPLRELMEACRTYPGLSNARRITFEYVMLKGVNDTPADARALVKLLEG 311
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
IP KINLI FN G+ + +T + F +I+ AG +R RG+D MAACGQL
Sbjct: 312 IPAKINLIPFNEWPGAPYERSTARAIQLFGDIVNNAGYASPVRTPRGEDIMAACGQL 368
>gi|352106567|ref|ZP_08961510.1| hypothetical protein HAL1_19551 [Halomonas sp. HAL1]
gi|350597610|gb|EHA13738.1| hypothetical protein HAL1_19551 [Halomonas sp. HAL1]
Length = 399
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 223/383 (58%), Gaps = 17/383 (4%)
Query: 79 TATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRS---HAFRP 135
T T + P + SDA P++ + L GMS +++ + S FR
Sbjct: 2 TTTVAQHTPAPRTDADSSDAASTPAAKATPERHN---LLGMSREQMEDFFLSIGEKKFRA 58
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
Q LM W G D +A T+ L+K ++ L+ AE R ++ TSSDGTRK +
Sbjct: 59 AQ-LMKWIHQEGSDDFAAMTN----LSKPLREKLARVAEIRGPAVIYEGTSSDGTRKWVL 113
Query: 196 MLDDGLVIETVVIPCNRG-RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
++DG +ETV+IP G R T+CVSSQVGC+++C FC TG+ G +R+LTAAEI+ Q
Sbjct: 114 EVEDGSYVETVLIPAENGKRRTLCVSSQVGCSLDCSFCSTGKQGFQRNLTAAEIIGQVWV 173
Query: 255 ARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSG 310
A+R + + +TNVV MGMGEPL N +NV+ A +M+ + G S R+VT+STSG
Sbjct: 174 AQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNVVPAMKLMLDDNGYGLSKRRVTLSTSG 233
Query: 311 LVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL-HFKNNYKV 369
+VP + + +E + +LA+SL+A+ DE+RN ++PINRKY + L++ L +N +V
Sbjct: 234 VVPMIDKLGDEMDVSLAISLHASNDELRNTLVPINRKYNIRALLDACHRYLAKCPDNRQV 293
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
EY ++ +ND + A++L L++ +PCKINLI FNP S + + +++ F+ L
Sbjct: 294 TIEYTLIKDINDQQEHAEQLAALLKELPCKINLIPFNPFPNSGYEKPSRNQVMRFQQWLY 353
Query: 430 GAGCTVFLRLSRGDDQMAACGQL 452
+R +RG+D AACGQL
Sbjct: 354 DLNYNATVRTTRGEDIDAACGQL 376
>gi|83941897|ref|ZP_00954359.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
gi|83847717|gb|EAP85592.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
Length = 391
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 196/329 (59%), Gaps = 15/329 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
R GQ + W +G +A T+ L+K F+ L+E + S DGTRK
Sbjct: 49 MRVGQ-IWQWIYQWGTRDFADMTN----LSKAFRAELAEKFVIEVPEVVTKQVSEDGTRK 103
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +E V IP GR T+CVSSQVGC + C FC+TG L R+LTAAEI+ Q
Sbjct: 104 YLVRIAGGHEVEVVYIP-EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQV 162
Query: 253 VFARR---------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
+ AR L+ ++N+V MGMGEPL+N ENV A I + +G+ S R+
Sbjct: 163 MVARDDLGEWPVPGTLTDAPRLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRR 222
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
+T+STSG+VP++ + E C LAVS +ATTDEVRN ++PIN+++ + LI+ LR
Sbjct: 223 ITLSTSGVVPEIARTAEEIGCQLAVSFHATTDEVRNKLVPINKRWNIAELIKALRAYPKV 282
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N+ ++ FEYVML GVNDS DA RLI L++GIP KINLI FN G+ + +++ ++
Sbjct: 283 SNSERITFEYVMLDGVNDSDADAHRLIELIRGIPAKINLIPFNEWPGAPYKRSSNNRIRA 342
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F I+ AG +R RG+D MAACGQL
Sbjct: 343 FSEIVYQAGYASPVRKPRGEDIMAACGQL 371
>gi|83855374|ref|ZP_00948904.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1]
gi|83843217|gb|EAP82384.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. NAS-14.1]
Length = 391
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 196/329 (59%), Gaps = 15/329 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
R GQ + W +G +A T+ L+K F+ L+E + S DGTRK
Sbjct: 49 MRVGQ-IWQWIYQWGTRDFADMTN----LSKAFRAELAEKFVIEVPEVVTKQVSEDGTRK 103
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +E V IP GR T+CVSSQVGC + C FC+TG L R+LTAAEI+ Q
Sbjct: 104 YLVRIAGGHEVEVVYIP-EEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQV 162
Query: 253 VFARR---------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
+ AR L+ ++N+V MGMGEPL+N ENV A I + +G+ S R+
Sbjct: 163 MVARDDLGEWPVPGTLTDAPRLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRR 222
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
+T+STSG+VP++ + E C LAVS +ATTDEVR+ ++PIN+++ + LIE LR
Sbjct: 223 ITLSTSGVVPEIARTAEEIGCQLAVSFHATTDEVRDKLVPINKRWNIAELIEALRAYPKV 282
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N+ ++ FEYVML GVNDS DA RLI L++GIP KINLI FN G+ + +++ ++
Sbjct: 283 SNSERITFEYVMLDGVNDSDADAHRLIELIRGIPAKINLIPFNEWPGAPYKRSSNNRIRA 342
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F I+ AG +R RG+D MAACGQL
Sbjct: 343 FSEIVYQAGYASPVRKPRGEDIMAACGQL 371
>gi|197106949|ref|YP_002132326.1| Fe-S-cluster redox protein [Phenylobacterium zucineum HLK1]
gi|254807192|sp|B4RCA4.1|RLMN_PHEZH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|196480369|gb|ACG79897.1| predicted Fe-S-cluster redox enzyme [Phenylobacterium zucineum
HLK1]
Length = 385
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/358 (43%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 108 PKKGSRVLLKGMSFTELQQ-WVRSHAFRPGQALMLWKRLYGDDIWAH--CTDELEGLNKD 164
P SR L GM+ EL V RP +A M +L+ W H + E +
Sbjct: 14 PLAPSRPNLSGMTRAELAACLVELGVVRPEKAKMRASQLWR---WMHHYGVTDFEKMTDV 70
Query: 165 FKKMLSEHAEFRALSLKDIL---TSSDGTRKILFMLDDGLVIETVVIPCNRGRT-TVCVS 220
K+ + AE A+S ++ S DGTRK L + G+ +ETV IP + GR +CVS
Sbjct: 71 AKETRAALAEVCAISRPQVVERQVSKDGTRKWLIRMAPGIEVETVYIP-DVGRAGALCVS 129
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMG 275
SQVGC +NC FC+TG L R+LTAAEIV Q AR L E ++N+VFMGMG
Sbjct: 130 SQVGCTLNCTFCHTGTQALVRNLTAAEIVAQVQVARDDLGEWPSPKEDRRLSNIVFMGMG 189
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL+N++NV A +I+ +G+ S R++TVSTSG+VP+L + LA+SL+AT D
Sbjct: 190 EPLYNLDNVAAAIDIIADNEGIAISRRRITVSTSGVVPELAALGERTQAMLAISLHATND 249
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
E+R ++P+NRKY + L+ +R N+ +V FEYVML GVNDS +AK L+ L++G
Sbjct: 250 ELREKLVPLNRKYPIAELMAAIRAYPGLSNSKRVTFEYVMLKGVNDSPAEAKALVNLLKG 309
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+P KINLI FNP GSQ+ +D IE F +L AG +R RG D +AACGQL
Sbjct: 310 VPAKINLIPFNPWPGSQYE-CSDWGTIERFAAVLNRAGYASPIRTPRGRDILAACGQL 366
>gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58]
gi|385341775|ref|YP_005895646.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|385853062|ref|YP_005899576.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|385857379|ref|YP_005903891.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
gi|416170615|ref|ZP_11608367.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|416187679|ref|ZP_11614291.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|416196373|ref|ZP_11618143.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|418288492|ref|ZP_12900973.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM233]
gi|418290737|ref|ZP_12902857.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM220]
gi|421540565|ref|ZP_15986710.1| 23S rRNA methyltransferase [Neisseria meningitidis 93004]
gi|421559264|ref|ZP_16005139.1| 23S rRNA methyltransferase [Neisseria meningitidis 92045]
gi|421567660|ref|ZP_16013394.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|427827981|ref|ZP_18995000.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|433465256|ref|ZP_20422738.1| 23S rRNA methyltransferase [Neisseria meningitidis NM422]
gi|433488593|ref|ZP_20445755.1| 23S rRNA methyltransferase [Neisseria meningitidis M13255]
gi|433490636|ref|ZP_20447762.1| 23S rRNA methyltransferase [Neisseria meningitidis NM418]
gi|433504965|ref|ZP_20461904.1| 23S rRNA methyltransferase [Neisseria meningitidis 9506]
gi|433507319|ref|ZP_20464227.1| 23S rRNA methyltransferase [Neisseria meningitidis 9757]
gi|433509250|ref|ZP_20466119.1| 23S rRNA methyltransferase [Neisseria meningitidis 12888]
gi|433511525|ref|ZP_20468352.1| 23S rRNA methyltransferase [Neisseria meningitidis 4119]
gi|81784539|sp|Q9JZ42.1|RLMN_NEIMB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
gi|372201111|gb|EHP15078.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM220]
gi|372201790|gb|EHP15672.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM233]
gi|402318719|gb|EJU54235.1| 23S rRNA methyltransferase [Neisseria meningitidis 93004]
gi|402336659|gb|EJU71919.1| 23S rRNA methyltransferase [Neisseria meningitidis 92045]
gi|402343693|gb|EJU78839.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|432203200|gb|ELK59254.1| 23S rRNA methyltransferase [Neisseria meningitidis NM422]
gi|432223426|gb|ELK79207.1| 23S rRNA methyltransferase [Neisseria meningitidis M13255]
gi|432227627|gb|ELK83336.1| 23S rRNA methyltransferase [Neisseria meningitidis NM418]
gi|432241090|gb|ELK96620.1| 23S rRNA methyltransferase [Neisseria meningitidis 9506]
gi|432241684|gb|ELK97213.1| 23S rRNA methyltransferase [Neisseria meningitidis 9757]
gi|432246638|gb|ELL02084.1| 23S rRNA methyltransferase [Neisseria meningitidis 12888]
gi|432247573|gb|ELL03010.1| 23S rRNA methyltransferase [Neisseria meningitidis 4119]
Length = 364
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|451948480|ref|YP_007469075.1| 23S rRNA methyltransferase [Desulfocapsa sulfexigens DSM 10523]
gi|451907828|gb|AGF79422.1| 23S rRNA methyltransferase [Desulfocapsa sulfexigens DSM 10523]
Length = 357
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 212/348 (60%), Gaps = 17/348 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L+ ++ EL +V S AFR Q +M W G ++ TD L KDF+++L+E+
Sbjct: 7 LRNLTQDELVCYVESLGQPAFRARQ-IMSWLYRPGITDFSQMTD----LAKDFRRLLAEN 61
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A I S DG K F LDDG +IE+V+IP R T+CVSSQVGCAMNC FC
Sbjct: 62 ARISQFQDPLIQQSQDGCVKFGFTLDDGKLIESVLIP-EPDRNTLCVSSQVGCAMNCSFC 120
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVG--SITNVVFMGMGEPLHNVENVI 285
T MG R+LT +EIV Q A L S +G +TN+VFMGMGEPL+N++N+I
Sbjct: 121 LTATMGFTRNLTPSEIVNQVCAAGDFLRNAPKSKRIGPDRVTNLVFMGMGEPLNNLDNLI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
KA +I+ ++GL + R++TVST G+V ++ + +++ LA+SL+A D RN +MP+N
Sbjct: 181 KAISILTEQRGLDMTNRRITVSTCGIVSKMLELGEKTDVNLAISLHAVDDTTRNSLMPVN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
+Y L L++ R+ K +++FEY++L G+NDS ++A L +++ IPCKINL+ +
Sbjct: 241 NRYSLEELLQACRDYPMAKRK-RIMFEYILLHGINDSDENAYELARILRDIPCKINLLPY 299
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
N G + + ++ F+ I+ G +VF+R SRG+D AACGQL
Sbjct: 300 NESPGLPYKSPSRNRVFAFQKIVRDKGYSVFIRTSRGEDISAACGQLA 347
>gi|297568774|ref|YP_003690118.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
gi|296924689|gb|ADH85499.1| radical SAM enzyme, Cfr family [Desulfurivibrio alkaliphilus AHT2]
Length = 354
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/353 (40%), Positives = 207/353 (58%), Gaps = 20/353 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD-----ELEGLNKDFK 166
+V LK M+ EL WV S +P +A ++ W H D ++ + K +
Sbjct: 4 EKVDLKNMTLPELTAWVESLDLKPFRARQIFA-------WIHRPDFTDFSQMTDIAKHVR 56
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
+L+E A L + +S DGT K F L DG +IE+V+IP + R T+CVSSQVGCA
Sbjct: 57 SLLAEKAFLSRLEPDKVESSQDGTVKFAFRLADGQLIESVLIPED-DRYTLCVSSQVGCA 115
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS------ITNVVFMGMGEPLHN 280
M C+FC T MG KR+L AAEIV Q A R L + G+ I N+VFMGMGEPL N
Sbjct: 116 MGCRFCLTATMGFKRNLEAAEIVGQVDAALRWLLARPGATGEKTRINNLVFMGMGEPLLN 175
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+++++A I++ ++G FS R++TVST G+VP++K+ + LAVSL+A +++R+
Sbjct: 176 FDHLLRAIKILMEQRGHDFSGRRITVSTCGIVPKMKELGEQVPVNLAVSLHAADNDIRDQ 235
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
+MPIN+KY L L+ R E +++ EYVM+ +NDS A+ L+ + GI CKI
Sbjct: 236 LMPINKKYPLEQLLRACR-EYPLPPRRRIMIEYVMIKDLNDSVAQARLLVKKLHGIRCKI 294
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
N++ +N + S + +E + FR IL AG T LR SRG D AACGQL
Sbjct: 295 NILPYNENPDSPYQAPDEETVENFRQILRRAGHTTLLRQSRGADISAACGQLA 347
>gi|349611007|ref|ZP_08890323.1| ribosomal RNA large subunit methyltransferase N [Neisseria sp.
GT4A_CT1]
gi|348615037|gb|EGY64569.1| ribosomal RNA large subunit methyltransferase N [Neisseria sp.
GT4A_CT1]
Length = 364
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L S+DGTRK
Sbjct: 25 FRAKQ-VMRWIHQAG----AQSFDEMTDLAKSLRLKLNEQASVDVPKLMMAQESTDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +T+E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|359393966|ref|ZP_09187019.1| Ribosomal RNA large subunit methyltransferase N [Halomonas
boliviensis LC1]
gi|357971213|gb|EHJ93658.1| Ribosomal RNA large subunit methyltransferase N [Halomonas
boliviensis LC1]
Length = 399
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/383 (38%), Positives = 222/383 (57%), Gaps = 17/383 (4%)
Query: 79 TATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRS---HAFRP 135
T + P + SDA P++ + L GMS +++ + S FR
Sbjct: 2 TTNVAQHTPAPRTDAESSDAARTPATKAAPERQN---LLGMSREQMEAFFLSIGEKKFRA 58
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
Q LM W G D +A T+ L+K ++ L+ AE R + TSSDGTRK +
Sbjct: 59 AQ-LMKWIHQEGSDDFAAMTN----LSKPLREKLARLAEIRGPGVIYEGTSSDGTRKWVL 113
Query: 196 MLDDGLVIETVVIPCNRG-RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
++D +ETV+IP G R T+CVSSQVGC+++C FC TG+ G +R+LTAAEI+ Q
Sbjct: 114 EVEDSSYVETVLIPAENGKRRTLCVSSQVGCSLDCSFCSTGKQGFQRNLTAAEIIGQVWV 173
Query: 255 ARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSG 310
A+R + + +TNVV MGMGEPL N +NV+ A +M+ + G S R+VT+STSG
Sbjct: 174 AQRSVGPRRDTANRPVTNVVMMGMGEPLLNFDNVVPAMKLMLDDNGYGLSKRRVTLSTSG 233
Query: 311 LVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL-HFKNNYKV 369
+VP + + +E + +LA+SL+A+TDE+RN ++PINRKY + L++ L +N +V
Sbjct: 234 VVPMIDKLGDEMDVSLAISLHASTDELRNELVPINRKYNIRALLDACHRYLAKCPDNRQV 293
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
EY ++ VND + A++L L++ +PCKINLI FNP S + + +++ F+ L
Sbjct: 294 TIEYTLIKDVNDQQEHAEQLAALLKELPCKINLIPFNPFPNSGYEKPSRNQVMRFQQWLY 353
Query: 430 GAGCTVFLRLSRGDDQMAACGQL 452
G +R +RG+D AACGQL
Sbjct: 354 DLGYNATVRTTRGEDIDAACGQL 376
>gi|374293180|ref|YP_005040215.1| ribosomal RNA large subunit methyltransferase N [Azospirillum
lipoferum 4B]
gi|357425119|emb|CBS88002.1| Ribosomal RNA large subunit methyltransferase N [Azospirillum
lipoferum 4B]
Length = 389
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 214/357 (59%), Gaps = 16/357 (4%)
Query: 106 VLPKKGS--RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGL 161
VLP + R L G+S EL+ + + +A LW +Y G +A E+ L
Sbjct: 11 VLPATDADGRKNLVGLSREELEAEMLAVGLEKFRARQLWHWIYHRGSTDFA----EMTTL 66
Query: 162 NKDFKKMLSE-HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
K ++ L++ + R +KD L S+DGTRK L + DG +E+V IP R T+CVS
Sbjct: 67 AKPVREKLADAYIVARPTVVKD-LKSADGTRKWLLRMPDGQEVESVHIP-EEDRGTLCVS 124
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMG 275
SQVGC + C+FC+TG L R+L +AEIV Q + AR +L + ++N+V MGMG
Sbjct: 125 SQVGCTLTCRFCHTGTQRLVRNLDSAEIVAQVMLARDMLGEWPAPPDGRMLSNIVMMGMG 184
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N +NV KA I++ G+ S R++T+STSG+VP +++ E N LAVSL+A TD
Sbjct: 185 EPLFNYDNVAKALKIVMDGDGISISKRRITLSTSGVVPMMERCGEELNVNLAVSLHAVTD 244
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
E+RN IMPINRKY L L+E R N ++ FEYVML GVND+ DA+ L+ L++G
Sbjct: 245 ELRNLIMPINRKYPLRDLMEACRNYPGLSNARRITFEYVMLKGVNDTPADARALVKLLEG 304
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
IP KINLI FN G+ + +T + F +I+ AG +R RG+D MAACGQL
Sbjct: 305 IPAKINLIPFNEWPGAPYERSTARAIQVFGDIVNNAGYASPVRTPRGEDIMAACGQL 361
>gi|333369698|ref|ZP_08461804.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
Length = 403
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/350 (41%), Positives = 212/350 (60%), Gaps = 19/350 (5%)
Query: 118 GMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHAEF 175
GMS +L + + +P +A + K +Y + TD ++ L+K ++ LSE A
Sbjct: 30 GMSQEQLGDYFKQIGEKPFRATQVMKWIYQHGV----TDFAQMTNLSKGLREKLSEKACV 85
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCN----RGRTTVCVSSQVGCAMNCQF 231
+ S DGTRK +F + G ++ETV+IP + GR T+C+SSQVGCA++C F
Sbjct: 86 ETPEVVHKEFSEDGTRKWVFKVAGGSLVETVLIPADDSKVNGRKTLCISSQVGCALDCSF 145
Query: 232 CYTGRMGLKRHLTAAEIVEQ-----AVFARRLLSSE-VGSITNVVFMGMGEPLHNVENVI 285
C TG+ G +R LTAAEI+ Q A + + SSE ++TNVV MGMGEPL N + V+
Sbjct: 146 CSTGKQGFERDLTAAEIIGQLWVANASYMEGVDSSEWQNNVTNVVMMGMGEPLLNYKPVV 205
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
+ ++M+ + S R+VT+STSG+VP++ + + ALA+SL+A DE+RN ++PIN
Sbjct: 206 SSMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDIDVALAISLHAPNDELRNELVPIN 265
Query: 346 RKYKLGLLIETLREELHFKN---NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
+KY L LI + +H N V EYVMLAGVNDS + A +L+ L++G+P KINL
Sbjct: 266 KKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAHQLVALLEGLPSKINL 325
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP + + +++ ++ F NIL AG +R +RGDD AACGQL
Sbjct: 326 IPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDDIDAACGQL 375
>gi|421563510|ref|ZP_16009329.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2795]
gi|421907044|ref|ZP_16336932.1| Ribosomal RNA large subunit methyltransferase N 2 [Neisseria
meningitidis alpha704]
gi|393292008|emb|CCI72901.1| Ribosomal RNA large subunit methyltransferase N 2 [Neisseria
meningitidis alpha704]
gi|402341206|gb|EJU76393.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2795]
Length = 364
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+N+V MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNIVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|403529952|ref|YP_006664481.1| hypothetical protein RM11_0019 [Bartonella quintana RM-11]
gi|403232024|gb|AFR25767.1| hypothetical protein RM11_0019 [Bartonella quintana RM-11]
Length = 387
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 215/385 (55%), Gaps = 30/385 (7%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKD 164
KK S+ L G+S E+ + +++ Q M LW LY + DE+ ++K
Sbjct: 2 KKRSKRSLIGLSQNEMAEALKAIGVPEQQTRMRVRQLWHWLYVRGV--SNFDEILNISKP 59
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFML---DDG--LVIETVVIPCNRGRTTVCV 219
++ML H + S DGTRK L +DG + +ETV IP GR T+C+
Sbjct: 60 IREMLKNHFSIARPEIVGEQISKDGTRKWLLRFPAREDGRPVEVETVYIP-EEGRGTLCL 118
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------------EVGS 265
SSQVGC + C FCYTG L R+LTA EI+ Q + AR L E
Sbjct: 119 SSQVGCTLTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPNRITPDGAIVPVEGRK 178
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
ITNVV MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E
Sbjct: 179 ITNVVMMGMGEPLYNFEGVKKALLIASDGDGLSLSKRRITLSTSGVVPEIVRAGEEIGVM 238
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LAVSL+A D +R+ ++PIN+KY L LLI+ R N ++ FEYVML G+NDS DD
Sbjct: 239 LAVSLHAVHDTLRDMLVPINKKYPLALLIDACRNYPGLSNAKRITFEYVMLKGINDSLDD 298
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
AKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ RG D
Sbjct: 299 AKRLIQLLKGIPSKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPRGRDI 358
Query: 446 MAACGQLGNPGAIQAPLLRVPEKFQ 470
+AACGQL + + LR E+ Q
Sbjct: 359 LAACGQLKS----ASERLRKSERLQ 379
>gi|83945705|ref|ZP_00958050.1| hypothetical protein OA2633_10954 [Oceanicaulis sp. HTCC2633]
gi|83850906|gb|EAP88766.1| hypothetical protein OA2633_10954 [Oceanicaulis alexandrii
HTCC2633]
Length = 391
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 209/355 (58%), Gaps = 12/355 (3%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSHAFRPGQ-----ALMLWKRLYGDDIWAHCTDELEGLN 162
P+ + L GM+ +L+ + H + A LW+ +Y + D++ ++
Sbjct: 12 PETTGPIALVGMTRPQLRDALVEHGLVDEKKAKMRAEQLWRWIYHYGVTEF--DQMTNVS 69
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
KD ++ L + + S DGTRK L + G+ +ETV IP +CVSSQ
Sbjct: 70 KDLRQQLEAKFTLARPEITERQVSVDGTRKYLIRMASGVEVETVFIPAVARSGALCVSSQ 129
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVGSITNVVFMGMGEP 277
VGC +NC FC+TG L R+LTAAEIV Q + AR L S+E ITN+VFMGMGEP
Sbjct: 130 VGCTLNCTFCHTGTQPLVRNLTAAEIVAQVMIARDDLGEWPTSNEDRQITNIVFMGMGEP 189
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L+N+++V + +++ +G+ R+ TVSTSG+VP++ + + LA+SL+AT DE+
Sbjct: 190 LYNLDHVSDSIDVISDHEGIGIGRRRTTVSTSGVVPKIPELGERTRSMLAISLHATNDEL 249
Query: 338 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
RN ++P+N+KY + L++ +R N+ +V FEYVML GVNDS +A+ L+ L++GIP
Sbjct: 250 RNELVPLNKKYPIAELMDAIRAYPDLSNSKRVTFEYVMLKGVNDSLAEARALVKLLKGIP 309
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
KINLI FNP GS + + +++ F +++ AG +R RG D AACGQL
Sbjct: 310 AKINLIPFNPWPGSPYECSDWDQIEAFADVVNRAGYASPIRTPRGRDIFAACGQL 364
>gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
Length = 362
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L S+DGTRK
Sbjct: 25 FRAKQ-VMRWMHQAG----AQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQESTDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +T+E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|347738747|ref|ZP_08870170.1| radical SAM enzyme, Cfr family [Azospirillum amazonense Y2]
gi|346918128|gb|EGY00234.1| radical SAM enzyme, Cfr family [Azospirillum amazonense Y2]
Length = 404
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/351 (42%), Positives = 208/351 (59%), Gaps = 10/351 (2%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
P+ RV L G+S +L+ V +A LW +Y + L K ++
Sbjct: 15 PRADGRVNLVGLSRDDLEAEVAKAGLERFRARQLWHWIYHRGATDFAV--ISTLAKPVRE 72
Query: 168 MLSE-HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L++ + R ++KD L S DGTRK L + DG IETV IP R T+CVSSQVGC
Sbjct: 73 KLADLYVIDRPTAVKD-LKSEDGTRKWLARMPDGQEIETVHIP-EEDRGTLCVSSQVGCT 130
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHNV 281
+ C+FC+TG L R+L A EIV Q + AR L + ++N+V MGMGEPL N
Sbjct: 131 LTCRFCHTGTQRLVRNLDATEIVGQVMLARDHLDEWPAPPDGRMLSNIVMMGMGEPLFNY 190
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
NV KA I++ +G+ S R++T+STSG+VP ++Q +E LAVSL+A DE+R+ I
Sbjct: 191 ANVAKALKIVMDGEGIAISKRRITLSTSGVVPMMRQCGDELGVNLAVSLHAVNDELRDRI 250
Query: 342 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
+P+NRKY + L++ R+ N ++ FEYVML GVNDS DA+ L+ L++GIP KIN
Sbjct: 251 VPLNRKYPIKELMQACRDYPGLSNARRITFEYVMLKGVNDSLADARELVRLLRGIPAKIN 310
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
LI FN G+ F +TDE++ +F + + AG +R RG D +AACGQL
Sbjct: 311 LIPFNYWPGAPFECSTDEQITKFADFVNNAGYASPVRTPRGRDILAACGQL 361
>gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442]
gi|205829821|sp|A9LZN6.1|RLMN_NEIM0 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 364
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDRAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|159045851|ref|YP_001534645.1| radical SAM protein [Dinoroseobacter shibae DFL 12]
gi|157913611|gb|ABV95044.1| radical SAM enzyme [Dinoroseobacter shibae DFL 12]
Length = 406
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 197/322 (61%), Gaps = 13/322 (4%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG 200
+W+ LY + +++ L K ++ +L++ E + S DGTRK L + G
Sbjct: 67 IWQWLYERGV--RDFNDMTNLAKPYRALLADQFEIAVPEVVSRHVSEDGTRKYLVRIAGG 124
Query: 201 LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR---- 256
+E V IP R T+CVSSQVGC + C FC+TG L R+LTA EIV Q + AR
Sbjct: 125 HEVEVVYIP-EEDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLG 183
Query: 257 ------RLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSG 310
R +E ++N+V MGMGEPL+N E V A I + +G+ S R++T+STSG
Sbjct: 184 EWPLPGRNPKNETRLLSNIVLMGMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSG 243
Query: 311 LVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 370
+VP++ + E C LAVS +ATTDEVR+ ++PIN+++ + L++ LR+ N+ ++
Sbjct: 244 VVPEIARTAEEIGCMLAVSFHATTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERIT 303
Query: 371 FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 430
FEYVML GVNDS +DA+RL+ L++GIP KINLI FN G+ + +++ ++ F +I+
Sbjct: 304 FEYVMLKGVNDSDEDARRLVELIKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYK 363
Query: 431 AGCTVFLRLSRGDDQMAACGQL 452
AG +R RG+D MAACGQL
Sbjct: 364 AGYASPIRTPRGEDIMAACGQL 385
>gi|126727284|ref|ZP_01743120.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium
HTCC2150]
gi|126703493|gb|EBA02590.1| radical SAM enzyme, Cfr family protein [Rhodobacterales bacterium
HTCC2150]
Length = 392
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 212/364 (58%), Gaps = 21/364 (5%)
Query: 99 GGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDEL 158
GG N+ L + G R L E Q +R+ GQ +W +Y + D +
Sbjct: 20 GGKINLVGLTRDGMRDALIAAGLPEKQGKMRT-----GQ---IWAWIYEKGV--RTFDVM 69
Query: 159 EGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVC 218
L+K ++ L+E E + S DGTRK L + G +E V IP + R T+C
Sbjct: 70 TNLSKGYRAELAESFEIAVPEVVTRQISEDGTRKYLVRIAGGHEVEVVYIP-EKDRGTLC 128
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----------EVGSITN 268
+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L E ++N
Sbjct: 129 ISSQVGCTLTCSFCHTGTQKLVRNLTAGEIIGQVMIARDDLGEWPELAQSPNVEARLLSN 188
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
+V MGMGEPL+N E+V A I + +G+ S R++T+STSG+VP++ + +E C LAV
Sbjct: 189 IVLMGMGEPLYNFESVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTADEIGCMLAV 248
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKR 388
S +ATTD+VR+ ++PIN+K+ + L++ LR N+ ++ FEYVML GVNDS +DA R
Sbjct: 249 SFHATTDDVRDKLVPINKKWNIEALLDALRAYPKASNSERITFEYVMLNGVNDSDEDAHR 308
Query: 389 LIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAA 448
L+ L++GIP KINLI FN G+ + +++ ++ F +I+ AG + +R RG+D MAA
Sbjct: 309 LVELIKGIPAKINLIPFNEWPGAPYQRSSNNRIRAFADIVFNAGYSSPVRRPRGEDIMAA 368
Query: 449 CGQL 452
CGQL
Sbjct: 369 CGQL 372
>gi|385328576|ref|YP_005882879.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
Length = 364
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LT+AEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|149201312|ref|ZP_01878287.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035]
gi|149145645|gb|EDM33671.1| hypothetical protein RTM1035_16842 [Roseovarius sp. TM1035]
Length = 392
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 143/352 (40%), Positives = 208/352 (59%), Gaps = 19/352 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCTDELEGLNKDFKKMLS 170
L G++ L++ + +H QA M +W+ +Y W + L K ++ L+
Sbjct: 25 LVGLTRDALREVLIAHGTPEKQAKMRVNQIWQWIYQ---WGVRDFHAMTNLAKAYRAQLA 81
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQ 230
E+ + S+DGTRK L + G +E V IP R T+C+SSQVGC + C
Sbjct: 82 ENFVVTIPEVVSKQVSADGTRKYLVRIAGGHEVEVVYIP-ETDRGTLCISSQVGCTLTCS 140
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARRLLSS------EVGS----ITNVVFMGMGEPLHN 280
FC+TG L R+LTA EI+ Q + AR L+ G I+N+V MGMGEPL+N
Sbjct: 141 FCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPKPGEPAGERPRLISNIVLMGMGEPLYN 200
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+NV A I + +G+ S R++T+STSG+VP++ + E C LAVS +ATTDEVR+
Sbjct: 201 FDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCLLAVSFHATTDEVRDT 260
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
++PIN+++ + L++TLRE N+ ++ FEYVML GVNDS DA+RL+ L++GIP KI
Sbjct: 261 LVPINKRWNIATLLDTLREYPRLSNSERITFEYVMLKGVNDSDADARRLVQLIKGIPAKI 320
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FN GS + + E++ F +I+ AG +R RG+D MAACGQL
Sbjct: 321 NLIPFNEWPGSPYQRSDWERIERFADIIYKAGYASPIRTPRGEDIMAACGQL 372
>gi|429745119|ref|ZP_19278562.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161326|gb|EKY03743.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 362
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 146/339 (43%), Positives = 196/339 (57%), Gaps = 10/339 (2%)
Query: 120 SFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA 177
L W +P +A +M W G + TD L K + L E A+
Sbjct: 9 DLNSLTAWFAEMGEKPFRARQVMRWMHWGGAANFTEMTD----LAKSLRAKLEEKAQIGV 64
Query: 178 LSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM 237
+L S DGTRK L + G +ETV IP R T+C+SSQVGCA+ C FC TGR
Sbjct: 65 PALMTSQESRDGTRKWLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQ 123
Query: 238 GLKRHLTAAEIVEQAVFARRLLSS---EVGSITNVVFMGMGEPLHNVENVIKAANIMVHE 294
G R+LT AEI+ Q +A + L + + I+NVV MGMGEPL N ENV++A ++M+ +
Sbjct: 124 GFNRNLTTAEIIGQLWWANKALGATPKDERVISNVVMMGMGEPLANYENVVRALSVMLDD 183
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
G S R+VTVSTSG+VPQ+ + + ALAVSL+A+ D VR+ I+P+N+KY L L+
Sbjct: 184 HGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDAVRDQIVPLNKKYPLKELM 243
Query: 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
R L V FEYVML G+ND + A+ L+ LV+ +PCK NLI FNP S +
Sbjct: 244 GACRRYLVKAPRDFVTFEYVMLDGINDKVEHARELLKLVEDVPCKFNLIPFNPFPNSGYD 303
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
++ E + FR+IL AG V +R +RGDD AACGQL
Sbjct: 304 RSSAENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLA 342
>gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
Length = 362
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L S+DGTRK
Sbjct: 25 FRAKQ-VMRWMHQAG----AQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQESTDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +T+E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRIFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
Length = 364
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV +PCK NLI FNP S++ +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSRYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472]
gi|81654669|sp|Q7NS85.1|RLMN_CHRVO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 364
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 146/330 (44%), Positives = 194/330 (58%), Gaps = 11/330 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q + ++ DD D + L K + L E AE R SL SSDGTRK
Sbjct: 25 FRAKQVMRWMHQMAEDDF-----DAMTDLAKSLRAKLHERAEVRVPSLMTGQASSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP + R T+CVSSQVGCA+ C FC TGR G R+L+ AEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIPED-DRGTLCVSSQVGCALECTFCSTGRQGFNRNLSTAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + ++NVV MGMGEPL N +NV+ A IM+ + G S R+VT+STS
Sbjct: 139 WWANKAMGVTPKNERVVSNVVMMGMGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
GLVPQ+ + E ALAVSL+A D +R+ I+PIN+KY L L+ R L +
Sbjct: 199 GLVPQMDRLREECPVALAVSLHAPNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND + A++L+ LV+ +PCK NLI FNP S + +++ + FR IL
Sbjct: 259 TFEYVMLDGVNDRPEHARQLLELVRDVPCKFNLIPFNPFPNSGYDRSSNNAIRIFREILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
G V +R +RGDD AACGQL G +Q
Sbjct: 319 EQGYVVTVRKTRGDDIDAACGQLA--GQVQ 346
>gi|86139440|ref|ZP_01058009.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193]
gi|85823943|gb|EAQ44149.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. MED193]
Length = 395
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 206/365 (56%), Gaps = 23/365 (6%)
Query: 99 GGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT-DE 157
G N+ + + R L G+ E Q R GQ +W+ +Y W E
Sbjct: 21 AGKTNLVGMTRDAMRQALVGIGVPEKQA-----KMRVGQ---IWQWIYQ---WGKRDFSE 69
Query: 158 LEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
+ L+K + L E E + S DGTRK L + G +E V IP R T+
Sbjct: 70 MTNLSKALRAQLEEGFEIAIPEVVSKQVSEDGTRKYLVRIAGGHEVEVVYIP-ETDRGTL 128
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----------SEVGSIT 267
C+SSQVGC + C FC+TG L R+LTAAEI+ Q + AR L E ++
Sbjct: 129 CISSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPVPGTRNPDEARLLS 188
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C LA
Sbjct: 189 NIVLMGMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGCLLA 248
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
VS +ATTDEVR+ ++PIN+++ + L+E LR N+ ++ FEYVML VNDS +DA
Sbjct: 249 VSFHATTDEVRDKLVPINKRWNIEALLEALRAYPRLANSERITFEYVMLDHVNDSKEDAH 308
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RL+ L++GIP KINLI FN GS + +++ ++ F +I+ AG +R RG+D MA
Sbjct: 309 RLVKLIEGIPAKINLIPFNEWPGSPYQRSSNNRIHAFADIIHDAGYASPIRKPRGEDIMA 368
Query: 448 ACGQL 452
ACGQL
Sbjct: 369 ACGQL 373
>gi|205829860|sp|A8LNF0.2|RLMN_DINSH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 394
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 197/322 (61%), Gaps = 13/322 (4%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG 200
+W+ LY + +++ L K ++ +L++ E + S DGTRK L + G
Sbjct: 55 IWQWLYERGV--RDFNDMTNLAKPYRALLADQFEIAVPEVVSRHVSEDGTRKYLVRIAGG 112
Query: 201 LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL- 259
+E V IP R T+CVSSQVGC + C FC+TG L R+LTA EIV Q + AR L
Sbjct: 113 HEVEVVYIP-EEDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMIARDDLG 171
Query: 260 ---------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSG 310
+E ++N+V MGMGEPL+N E V A I + +G+ S R++T+STSG
Sbjct: 172 EWPLPGRNPKNETRLLSNIVLMGMGEPLYNFEAVRDAMKIAMDPEGISLSRRRITLSTSG 231
Query: 311 LVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 370
+VP++ + E C LAVS +ATTDEVR+ ++PIN+++ + L++ LR+ N+ ++
Sbjct: 232 VVPEIARTAEEIGCMLAVSFHATTDEVRDKLVPINKRWNIATLLDALRDYPKASNSERIT 291
Query: 371 FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 430
FEYVML GVNDS +DA+RL+ L++GIP KINLI FN G+ + +++ ++ F +I+
Sbjct: 292 FEYVMLKGVNDSDEDARRLVELIKGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYK 351
Query: 431 AGCTVFLRLSRGDDQMAACGQL 452
AG +R RG+D MAACGQL
Sbjct: 352 AGYASPIRTPRGEDIMAACGQL 373
>gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18]
gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14]
gi|385340216|ref|YP_005894088.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
gi|416177921|ref|ZP_11610290.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|416191949|ref|ZP_11616330.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|416203929|ref|ZP_11620162.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|421538259|ref|ZP_15984436.1| 23S rRNA methyltransferase [Neisseria meningitidis 93003]
gi|421544602|ref|ZP_15990678.1| 23S rRNA methyltransferase [Neisseria meningitidis NM140]
gi|421546717|ref|ZP_15992762.1| 23S rRNA methyltransferase [Neisseria meningitidis NM183]
gi|421548969|ref|ZP_15994993.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|421552920|ref|ZP_15998892.1| 23S rRNA methyltransferase [Neisseria meningitidis NM576]
gi|433467457|ref|ZP_20424911.1| 23S rRNA methyltransferase [Neisseria meningitidis 87255]
gi|433492708|ref|ZP_20449801.1| 23S rRNA methyltransferase [Neisseria meningitidis NM586]
gi|433494842|ref|ZP_20451910.1| 23S rRNA methyltransferase [Neisseria meningitidis NM762]
gi|433497009|ref|ZP_20454047.1| 23S rRNA methyltransferase [Neisseria meningitidis M7089]
gi|433499071|ref|ZP_20456080.1| 23S rRNA methyltransferase [Neisseria meningitidis M7124]
gi|433501047|ref|ZP_20458033.1| 23S rRNA methyltransferase [Neisseria meningitidis NM174]
gi|433503188|ref|ZP_20460149.1| 23S rRNA methyltransferase [Neisseria meningitidis NM126]
gi|205829823|sp|A1KUD6.1|RLMN_NEIMF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
gi|402317078|gb|EJU52617.1| 23S rRNA methyltransferase [Neisseria meningitidis 93003]
gi|402322962|gb|EJU58412.1| 23S rRNA methyltransferase [Neisseria meningitidis NM183]
gi|402323793|gb|EJU59235.1| 23S rRNA methyltransferase [Neisseria meningitidis NM140]
gi|402325648|gb|EJU61057.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|402330099|gb|EJU65448.1| 23S rRNA methyltransferase [Neisseria meningitidis NM576]
gi|432202291|gb|ELK58355.1| 23S rRNA methyltransferase [Neisseria meningitidis 87255]
gi|432228494|gb|ELK84194.1| 23S rRNA methyltransferase [Neisseria meningitidis NM586]
gi|432230045|gb|ELK85724.1| 23S rRNA methyltransferase [Neisseria meningitidis NM762]
gi|432233502|gb|ELK89129.1| 23S rRNA methyltransferase [Neisseria meningitidis M7089]
gi|432234905|gb|ELK90525.1| 23S rRNA methyltransferase [Neisseria meningitidis M7124]
gi|432236338|gb|ELK91947.1| 23S rRNA methyltransferase [Neisseria meningitidis NM174]
gi|432239953|gb|ELK95497.1| 23S rRNA methyltransferase [Neisseria meningitidis NM126]
Length = 364
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
Length = 363
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 143/321 (44%), Positives = 193/321 (60%), Gaps = 6/321 (1%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
DE+ L K + L+E A+ +L S DGTRK L + G +ETV IP R
Sbjct: 43 DEMTDLAKSLRAKLNESAQVGVPALMAAQESRDGTRKWLLDVGTGNGVETVFIP-ETDRG 101
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---EVGSITNVVFM 272
T+C+SSQVGCA+ C FC TGR G R+L+ AEI+ Q +A + L + + I+NVV M
Sbjct: 102 TLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQLWWANKALGATPKDERVISNVVMM 161
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL N +NV+ A +IM+ + G S R+VTVSTSG+VPQ+ + + ALAVSL+A
Sbjct: 162 GMGEPLANYDNVVTALSIMLDDHGYALSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHA 221
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
D +RN I+P+N+KY L L+ + L V FEYVML GVND + A+ L+ L
Sbjct: 222 PNDAIRNEIVPLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGVNDKPEHARELLEL 281
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
V+ +PCK NLI FNP S + ++DE + FR+IL AG V +R +RGDD AACGQL
Sbjct: 282 VKDVPCKFNLIPFNPFPNSGYNRSSDENIRVFRDILYQAGLVVTVRKTRGDDIDAACGQL 341
Query: 453 GNPGAIQAPLLRVPEKFQTAI 473
G +Q R + Q +
Sbjct: 342 A--GQVQDKTRRQQKWLQLQV 360
>gi|345875081|ref|ZP_08826877.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
gi|343969508|gb|EGV37720.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
Length = 362
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 203/356 (57%), Gaps = 11/356 (3%)
Query: 121 FTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSL 180
TE Q + FR Q L W G +A TD L K + L E AE L
Sbjct: 13 LTEHFQAMGEKPFRAKQVLR-WIHQGGASDFAEMTD----LAKSLRSKLEEKAEIAVPEL 67
Query: 181 KDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
SSDGTRK L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G
Sbjct: 68 MTSQISSDGTRKWLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFN 126
Query: 241 RHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
R+LTAAEI+ Q +A + + + I+NVV MGMGEPL N +NV+ A +IM+ + G
Sbjct: 127 RNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPLANFDNVVTALSIMLDDHGY 186
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R+VTVSTSG+VPQ+ + ALAVSL+A+ DEVR+ I+P+N+KY L L+
Sbjct: 187 GLSRRRVTVSTSGMVPQMDRLKEVMPVALAVSLHASNDEVRDEIVPLNKKYPLRELMAAC 246
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
+ L + FEYVML GVND A LI LV+ +PCK NLI FNP S + ++
Sbjct: 247 QRYLVKAPRDFITFEYVMLDGVNDKPQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSS 306
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAI 473
+E + FR+IL AG V +R +RGDD AACGQL G +Q R + Q A+
Sbjct: 307 NENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQLA--GQVQDKTKRQQKWQQIAL 360
>gi|349574484|ref|ZP_08886432.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
gi|348013953|gb|EGY52849.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
Length = 363
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 148/324 (45%), Positives = 194/324 (59%), Gaps = 9/324 (2%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W L G A D++ L K + L + AE L S DGTRK
Sbjct: 25 FRARQ-VMRWMHLGG----AADFDDMTDLAKSLRAKLKDRAEVGVPDLMTAQKSRDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+L+AAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + L + I+NVV MGMGEPL N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKALGVTPKNERVISNVVMMGMGEPLANYDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ D VRN I+P+N+KY L L+ R L V
Sbjct: 199 GMVPQMDRLKEDMPVALAVSLHASNDAVRNEIVPLNKKYPLTELMAACRRYLAKAPRDFV 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND + A+ L+ LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGVNDRPEHARELLTLVRDVPCKFNLIPFNPFPHSGYQRSSNENIRIFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLG 453
AG V +R +RGDD AACGQL
Sbjct: 319 QAGLVVTVRKTRGDDIDAACGQLA 342
>gi|302341935|ref|YP_003806464.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075]
gi|301638548|gb|ADK83870.1| radical SAM enzyme, Cfr family [Desulfarculus baarsii DSM 2075]
Length = 359
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 143/343 (41%), Positives = 203/343 (59%), Gaps = 17/343 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFKKMLSEH 172
L+ ++ +L + + +P +A + + L+G DDI ++ L+K + LS
Sbjct: 7 LRDLTAEQLARLLADLGEKPFRARQVSQWLHGHGVDDIA-----DMTSLSKALRAKLSAV 61
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A+ +L S+DGTRK+LF+L+DG IE+V++P + G T+CVS+QVGC C+FC
Sbjct: 62 GRLTAMGPAKVLQSADGTRKLLFLLEDGQAIESVLMPED-GHHTLCVSTQVGCRQGCRFC 120
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
T +GL+R+L AEI+ Q + ARRL E +TN+VFMGMGEPL N++NVI A ++
Sbjct: 121 ATASLGLRRNLRPAEILGQVLAARRL-CDEFRPLTNLVFMGMGEPLDNLDNVIVALGHIL 179
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
E GL S R+VTVST GLV +L S CALA+SLNA + +R IMP+ +++ L
Sbjct: 180 GEHGLQMSQRRVTVSTVGLVDRLPLLAAASPCALAISLNAPNEHIRRQIMPVTKRFGL-- 237
Query: 353 LIETLRE---ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC 409
E LR + K +V EYV+L GVND + A+ L +G+P K+NLI+FNPH
Sbjct: 238 --EALRRAIVDYPLKPTRRVTLEYVLLGGVNDRPEHARELARWAKGLPVKVNLIAFNPHQ 295
Query: 410 GSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F + EF+N+L T LR SRG D AACGQL
Sbjct: 296 AGPFQAPEAAAVEEFQNVLIEGHVTALLRRSRGQDIAAACGQL 338
>gi|406889517|gb|EKD35688.1| hypothetical protein ACD_75C01819G0010 [uncultured bacterium]
Length = 361
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 210/351 (59%), Gaps = 17/351 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ LK ++ L +V S AFR G+ +M W G ++ TD L K F+ +L
Sbjct: 6 KIDLKNLTQAGLIAYVESLGQPAFR-GRQIMGWMYRPGITEFSQMTD----LAKVFRNIL 60
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
E+A + IL S DG K F L DG +IE+V+IP R T+C+SSQVGCAM C
Sbjct: 61 EENAFISRFTDPLILKSDDGCVKFGFRLTDGNLIESVLIP-EPDRNTLCISSQVGCAMGC 119
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVE 282
FC TG MG KR+LT AEIV Q AR L ++ +TNVV+MGMGEPL+N+E
Sbjct: 120 SFCLTGTMGFKRNLTPAEIVNQICGARDYLLAQPKEQLLGPDRVTNVVYMGMGEPLNNLE 179
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ + +I+ ++GL + R++TVST G+VP++++ +S LA+SL+A DE R +M
Sbjct: 180 NVLASLSIITEQKGLDLTSRRITVSTCGIVPKMRELGEKSAVNLAISLHAVDDETRRRLM 239
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN +Y + L+ R + +++FEY++L G+NDS +A+ L ++ IPCKINL
Sbjct: 240 PINDRYSIDDLLAACR-DFPMPKRKRIMFEYILLKGINDSDREARELARKLKDIPCKINL 298
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ +N G + E+++ F+ IL A TVF+R SRG D AACGQL
Sbjct: 299 LPYNESPGLPYRSPGMERLLAFQKILLDAHYTVFIRNSRGSDISAACGQLA 349
>gi|389878972|ref|YP_006372537.1| cfr family radical SAM enzyme [Tistrella mobilis KA081020-065]
gi|388529756|gb|AFK54953.1| cfr family radical SAM enzyme [Tistrella mobilis KA081020-065]
Length = 421
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 145/355 (40%), Positives = 206/355 (58%), Gaps = 10/355 (2%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNK 163
+ ++P G R L+ G+ EL+ + + +P +A LW +Y A D++ + K
Sbjct: 34 VTLVPGNGRRTLI-GLDRQELEAEMAALGEKPFRAKQLWHWMYFRG--ARDFDDMTNVPK 90
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
F+ L+EH + SSDGT K L DG +ETV IP + GR +CVSSQV
Sbjct: 91 AFRAKLAEHFVIGRPEITTDQLSSDGTAKWLLRFADGREVETVHIP-DDGRGALCVSSQV 149
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS------ITNVVFMGMGEP 277
GC + C+FC+TG R+L+AAEI Q + AR L I+N+V MGMGEP
Sbjct: 150 GCTLTCKFCHTGTQTWVRNLSAAEITAQMLVARDRLGEWPTPTDANRLISNIVLMGMGEP 209
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L+N + V KA I++ +G+ S R++T+STSG+VP +++ E LAVSL+A TD+V
Sbjct: 210 LYNFDAVAKAMRIVMDGEGVALSRRRITLSTSGVVPMMQRCGEELGVNLAVSLHAVTDDV 269
Query: 338 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
R+ ++PINRKY + L+E R N ++ FEYVML GVNDS DA+ L+ L+ GIP
Sbjct: 270 RDVLVPINRKYPIAELMEACRTYPAASNARRITFEYVMLKGVNDSLADARELVRLLDGIP 329
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
K+NLI FNP GS F ++ ++ F L G + +R RG D +AACGQL
Sbjct: 330 AKVNLIPFNPWPGSTFECSSWTQIRNFATYLNDQGYSSPVRTPRGRDILAACGQL 384
>gi|417958218|ref|ZP_12601134.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
gi|343967280|gb|EGV35529.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
Length = 362
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 203/356 (57%), Gaps = 11/356 (3%)
Query: 121 FTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSL 180
TE Q + FR Q L W G +A TD L K + L E AE L
Sbjct: 13 LTEHFQAMGEKPFRAKQVLR-WIHQGGASDFAEMTD----LAKSLRSKLEEKAEIAIPEL 67
Query: 181 KDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
SSDGTRK L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G
Sbjct: 68 MTSQISSDGTRKWLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFN 126
Query: 241 RHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
R+LTAAEI+ Q +A + + + I+NVV MGMGEPL N +NV+ A +IM+ + G
Sbjct: 127 RNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPLANFDNVVTALSIMLDDHGY 186
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R+VTVSTSG+VPQ+ + ALAVSL+A+ DEVR+ I+P+N+KY L L+
Sbjct: 187 GLSRRRVTVSTSGMVPQMDRLKEVMPVALAVSLHASNDEVRDEIVPLNKKYPLRELMAAC 246
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
+ L + FEYVML GVND A LI LV+ +PCK NLI FNP S + ++
Sbjct: 247 QRYLVKAPRDFITFEYVMLDGVNDKPQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSS 306
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAI 473
+E + FR+IL AG V +R +RGDD AACGQL G +Q R + Q A+
Sbjct: 307 NENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQLA--GQVQDKTKRQQKWQQIAL 360
>gi|407781692|ref|ZP_11128909.1| radical SAM enzyme [Oceanibaculum indicum P24]
gi|407207318|gb|EKE77255.1| radical SAM enzyme [Oceanibaculum indicum P24]
Length = 383
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 198/328 (60%), Gaps = 15/328 (4%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
AFR Q +W +Y + TD + + KD + L+E + S+DG
Sbjct: 48 AFRMKQ---VWNWVYHRGV----TDFEAMTNIAKDLRGKLAEQFRIERPQVVTEQKSTDG 100
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K L +DG +ETV IP R T+CVSSQVGC + C+FC+TG R+L A EIV
Sbjct: 101 TIKWLLRFEDGNEVETVFIP-EEDRGTLCVSSQVGCTLTCKFCHTGTQRWVRNLGAPEIV 159
Query: 250 EQAVFARRLL-----SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
Q + AR L S E + TN+V MGMGEPL+N +NV KA I++ +G+ S RK+
Sbjct: 160 GQVMLARDKLGEWPASMEGRNFTNIVMMGMGEPLYNYDNVAKALKIIMDGEGIALSRRKI 219
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+ST+G+VP + + E LAVSL+A TDE+R+ I+P+NRKYKL LI+ R+
Sbjct: 220 TLSTAGVVPAMAKCGEELGVNLAVSLHAVTDEIRDVIVPLNRKYKLAELIQACRDYPGAS 279
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
N ++ FEYVML GVNDS +DA L+ L++GIP K+NLI FNP GS F +++ ++ +F
Sbjct: 280 NARRITFEYVMLKGVNDSDEDAHALVKLLEGIPAKMNLIPFNPWPGSPFERSSNTRIDKF 339
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQL 452
IL AG +R +RG D MAACGQL
Sbjct: 340 SKILMAAGYASPVRTTRGADIMAACGQL 367
>gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
Length = 378
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 148/356 (41%), Positives = 210/356 (58%), Gaps = 17/356 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGL 161
N + KK V L ++ ++ + + +P +A + K LY DD DE+ L
Sbjct: 3 NAIDKK---VNLLNLNRDGMKAFFKEMGEKPFRADQVMKWLYHFCVDDF-----DEMTNL 54
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK ++ L + AE RA +++ SSDGT K + L DG +ETV IP R R T+CVSS
Sbjct: 55 NKGLREKLKQCAEIRAPEIREQQQSSDGTIKFVMTLFDGQDVETVWIP-ERDRATLCVSS 113
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEP 277
QVGCA+ C FC TG+ G R+L AEI+ Q +LL + + +TNVV MGMGEP
Sbjct: 114 QVGCALECTFCSTGQQGFNRNLNVAEIIGQVWRVNQLLGAYGKTGIKPVTNVVMMGMGEP 173
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A ++M+ + G S R+VT+STSG+VP L + + + LA+SL+A DE+
Sbjct: 174 LLNLNNVVPAMDLMMDDYGFGLSKRRVTLSTSGVVPALDKLREQIDVMLAISLHAPNDEL 233
Query: 338 RNWIMPINRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
RN I+PIN+KY + + + R+ + K +KV EYVML VNDS D A L ++
Sbjct: 234 RNEIVPINKKYNIEQFLASSRKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELARTLKDT 293
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P KINLI FNP GS + +++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 294 PSKINLIPFNPFPGSDYGRSSNSRIDRFAKVLMDYGFTVMVRKTRGDDIDAACGQL 349
>gi|298368581|ref|ZP_06979899.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282584|gb|EFI24071.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
F0314]
Length = 364
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 147/324 (45%), Positives = 193/324 (59%), Gaps = 9/324 (2%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K ++ L E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQAG----AQNFDEMTDLAKSLRQKLIEGATIEVPKLMAAQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ETDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDNHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDAMPVALAVSLHASNDEVRDKIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND+ A+ LI LV+ +PCK NLI FNP S + ++ E + FR+IL
Sbjct: 259 TFEYVMLDGVNDNAQHARELIDLVRDVPCKFNLIPFNPFPHSGYERSSAENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLG 453
AG V +R +RGDD AACGQL
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA 342
>gi|419797471|ref|ZP_14322948.1| 23S rRNA m2A2503 methyltransferase [Neisseria sicca VK64]
gi|385698033|gb|EIG28425.1| 23S rRNA m2A2503 methyltransferase [Neisseria sicca VK64]
Length = 364
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L S+DGTRK
Sbjct: 25 FRAKQ-VMRWIHQAG----AQSFNEMTDLAKSLRLKLNEQASVDVPKLMMAQESTDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +T+E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491]
gi|385324024|ref|YP_005878463.1| hypothetical protein NMV_1088 [Neisseria meningitidis 8013]
gi|385338161|ref|YP_005892034.1| hypothetical protein NMAA_1039 [Neisseria meningitidis WUE 2594]
gi|416182800|ref|ZP_11612236.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
gi|421550805|ref|ZP_15996806.1| 23S rRNA methyltransferase [Neisseria meningitidis 69166]
gi|433471445|ref|ZP_20428831.1| 23S rRNA methyltransferase [Neisseria meningitidis 68094]
gi|433475156|ref|ZP_20432497.1| 23S rRNA methyltransferase [Neisseria meningitidis 88050]
gi|433477755|ref|ZP_20435075.1| 23S rRNA methyltransferase [Neisseria meningitidis 70012]
gi|433479825|ref|ZP_20437115.1| 23S rRNA methyltransferase [Neisseria meningitidis 63041]
gi|433513632|ref|ZP_20470422.1| 23S rRNA methyltransferase [Neisseria meningitidis 63049]
gi|433515920|ref|ZP_20472688.1| 23S rRNA methyltransferase [Neisseria meningitidis 2004090]
gi|433517705|ref|ZP_20474451.1| 23S rRNA methyltransferase [Neisseria meningitidis 96023]
gi|433520087|ref|ZP_20476807.1| 23S rRNA methyltransferase [Neisseria meningitidis 65014]
gi|433522022|ref|ZP_20478713.1| 23S rRNA methyltransferase [Neisseria meningitidis 61103]
gi|433524326|ref|ZP_20480987.1| 23S rRNA methyltransferase [Neisseria meningitidis 97020]
gi|433526413|ref|ZP_20483043.1| 23S rRNA methyltransferase [Neisseria meningitidis 69096]
gi|433528380|ref|ZP_20484989.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3652]
gi|433530581|ref|ZP_20487170.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3642]
gi|433532850|ref|ZP_20489413.1| 23S rRNA methyltransferase [Neisseria meningitidis 2007056]
gi|433534647|ref|ZP_20491187.1| 23S rRNA methyltransferase [Neisseria meningitidis 2001212]
gi|433539090|ref|ZP_20495566.1| 23S rRNA methyltransferase [Neisseria meningitidis 70030]
gi|433541165|ref|ZP_20497617.1| 23S rRNA methyltransferase [Neisseria meningitidis 63006]
gi|205829822|sp|A1ISB3.1|RLMN_NEIMA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
gi|402329342|gb|EJU64703.1| 23S rRNA methyltransferase [Neisseria meningitidis 69166]
gi|432208297|gb|ELK64275.1| 23S rRNA methyltransferase [Neisseria meningitidis 68094]
gi|432210974|gb|ELK66929.1| 23S rRNA methyltransferase [Neisseria meningitidis 88050]
gi|432215420|gb|ELK71309.1| 23S rRNA methyltransferase [Neisseria meningitidis 70012]
gi|432216164|gb|ELK72046.1| 23S rRNA methyltransferase [Neisseria meningitidis 63041]
gi|432247164|gb|ELL02603.1| 23S rRNA methyltransferase [Neisseria meningitidis 63049]
gi|432252846|gb|ELL08196.1| 23S rRNA methyltransferase [Neisseria meningitidis 2004090]
gi|432253441|gb|ELL08785.1| 23S rRNA methyltransferase [Neisseria meningitidis 96023]
gi|432254809|gb|ELL10143.1| 23S rRNA methyltransferase [Neisseria meningitidis 65014]
gi|432259570|gb|ELL14841.1| 23S rRNA methyltransferase [Neisseria meningitidis 97020]
gi|432259839|gb|ELL15109.1| 23S rRNA methyltransferase [Neisseria meningitidis 61103]
gi|432261177|gb|ELL16434.1| 23S rRNA methyltransferase [Neisseria meningitidis 69096]
gi|432265181|gb|ELL20377.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3652]
gi|432266673|gb|ELL21855.1| 23S rRNA methyltransferase [Neisseria meningitidis 2007056]
gi|432267088|gb|ELL22269.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3642]
gi|432271389|gb|ELL26514.1| 23S rRNA methyltransferase [Neisseria meningitidis 2001212]
gi|432273452|gb|ELL28550.1| 23S rRNA methyltransferase [Neisseria meningitidis 70030]
gi|432277178|gb|ELL32227.1| 23S rRNA methyltransferase [Neisseria meningitidis 63006]
Length = 364
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1]
gi|205829828|sp|A5WGQ4.1|RLMN_PSYWF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148572786|gb|ABQ94845.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter sp. PRwf-1]
Length = 403
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 215/360 (59%), Gaps = 19/360 (5%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDF 165
P ++ + GM+ +L + + +P +A + K +Y + TD ++ L+K
Sbjct: 18 PNAPTKTNILGMNQEQLGAYFKHIGEKPFRATQVMKWIYQHGV----TDFAQMTNLSKGL 73
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCN----RGRTTVCVSS 221
++ LSE A + S DGTRK +F + G ++ETV+IP + GR T+C+SS
Sbjct: 74 REKLSEQACIELPEVMHKEFSEDGTRKWVFKVAGGSLVETVLIPADDSKVNGRKTLCISS 133
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ-----AVFARRLLSSE-VGSITNVVFMGMG 275
QVGCA++C FC TG+ G +R LTAAEI+ Q A + + S+E ++TNVV MGMG
Sbjct: 134 QVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASYMEGVDSTEWQNNVTNVVMMGMG 193
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N V+ + +M+ + S R+VT+STSG+VP++ + + + ALA+SL+A D
Sbjct: 194 EPLLNYTPVVSSMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDIDVALAISLHAPND 253
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKN---NYKVLFEYVMLAGVNDSFDDAKRLIGL 392
E+RN ++PIN+KY L LI + +H N V EYVMLAGVNDS + A++L+ L
Sbjct: 254 ELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAQQLVAL 313
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ G+P KINLI FNP + + +++ ++ F NIL AG +R +RGDD AACGQL
Sbjct: 314 LDGLPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDDIDAACGQL 373
>gi|416161426|ref|ZP_11606391.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
gi|421557411|ref|ZP_16003316.1| 23S rRNA methyltransferase [Neisseria meningitidis 80179]
gi|421561379|ref|ZP_16007227.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2657]
gi|433469505|ref|ZP_20426926.1| 23S rRNA methyltransferase [Neisseria meningitidis 98080]
gi|433473705|ref|ZP_20431066.1| 23S rRNA methyltransferase [Neisseria meningitidis 97021]
gi|433482269|ref|ZP_20439529.1| 23S rRNA methyltransferase [Neisseria meningitidis 2006087]
gi|433484252|ref|ZP_20441478.1| 23S rRNA methyltransferase [Neisseria meningitidis 2002038]
gi|433486519|ref|ZP_20443714.1| 23S rRNA methyltransferase [Neisseria meningitidis 97014]
gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
gi|402335049|gb|EJU70324.1| 23S rRNA methyltransferase [Neisseria meningitidis 80179]
gi|402338842|gb|EJU74072.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2657]
gi|432203775|gb|ELK59825.1| 23S rRNA methyltransferase [Neisseria meningitidis 98080]
gi|432210003|gb|ELK65969.1| 23S rRNA methyltransferase [Neisseria meningitidis 97021]
gi|432216062|gb|ELK71945.1| 23S rRNA methyltransferase [Neisseria meningitidis 2006087]
gi|432220938|gb|ELK76755.1| 23S rRNA methyltransferase [Neisseria meningitidis 2002038]
gi|432221804|gb|ELK77608.1| 23S rRNA methyltransferase [Neisseria meningitidis 97014]
Length = 364
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|259417568|ref|ZP_05741487.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B]
gi|259346474|gb|EEW58288.1| radical SAM enzyme, Cfr family [Silicibacter sp. TrichCH4B]
Length = 397
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 216/369 (58%), Gaps = 23/369 (6%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HC 154
++ LP+K G ++ L G++ +++ + H QA M +W+ +Y W
Sbjct: 10 DVLTLPRKEPEGGKINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQ---WGVRN 66
Query: 155 TDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGR 214
E+ L K ++ L E E R + S+DGTRK L ++ G +E V IP + R
Sbjct: 67 FSEMTNLAKAYRAQLEETFEIRIPEVVSKQVSTDGTRKYLVRINGGHEVEVVYIPED-DR 125
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGS 265
T+C+SSQVGC + C FC+TG L R+LT AEI+ Q + AR L E
Sbjct: 126 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTPGAPKDETRL 185
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 186 LSNIVLMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCL 245
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LA+S +ATT+EVR+ ++PINR++ + L+++L N+ ++ FEYVML GVNDS +D
Sbjct: 246 LAISFHATTNEVRDVLVPINRRWNIDELLQSLANYPKVSNSERITFEYVMLDGVNDSDED 305
Query: 386 AKRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
A RL+ ++ IP KINLI FN G+ + +++ ++ F NI+ AG +R +RGD
Sbjct: 306 AHRLLEHIKRYDIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGD 365
Query: 444 DQMAACGQL 452
D MAACGQL
Sbjct: 366 DIMAACGQL 374
>gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica 020-06]
gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 364
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/357 (43%), Positives = 207/357 (57%), Gaps = 18/357 (5%)
Query: 123 ELQQWVRSHA------FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFR 176
+LQ +R A FR Q +M W G A DE+ L K + L+E A
Sbjct: 9 DLQGLIRHFADMGEKPFRAKQ-VMRWIHQSG----AQNFDEMTDLAKSLRHKLNEQANIG 63
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
L SSDGTRK L + G +ETV IP + R T+C+SSQVGCA+ C FC TGR
Sbjct: 64 IPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESE-RGTLCISSQVGCALECTFCSTGR 122
Query: 237 MGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVH 293
G R+LTAAEI+ Q +A + + + I+NVV MGMGEP+ N +NV+ A +IM+
Sbjct: 123 QGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLD 182
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353
+ G S R+VTVSTSG+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L
Sbjct: 183 DHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKEL 242
Query: 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 413
+ R L + FEYVML G+ND A LI LV+ +PCK NLI FNP S +
Sbjct: 243 MAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGY 302
Query: 414 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
++ E + F++IL AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 303 ERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
Length = 364
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+++ G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLNDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND A LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
A V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAEFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|421565597|ref|ZP_16011370.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|433536930|ref|ZP_20493435.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
gi|402344032|gb|EJU79174.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|432273866|gb|ELL28963.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
Length = 364
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 202/341 (59%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LT+AEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|153005041|ref|YP_001379366.1| radical SAM protein [Anaeromyxobacter sp. Fw109-5]
gi|205829648|sp|A7HCD6.1|RLMN_ANADF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|152028614|gb|ABS26382.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. Fw109-5]
Length = 377
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/366 (42%), Positives = 211/366 (57%), Gaps = 22/366 (6%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA 173
L+ + L++ V + RP +A L W + G A DEL + + + L+E
Sbjct: 16 LRSLPLDRLERLVAALGERPFRARQLHRWLQQKG----AASLDELTDVPRALRAALAEAT 71
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
L S DGT K + DG ++E+V +P R T+CVSSQVGCA+ C FC
Sbjct: 72 TLTTLERATEQRSVDGTIKWTWRTHDGKLVESVYMP-EPDRRTLCVSSQVGCAVGCTFCL 130
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS------ITNVVFMGMGEPLHNVENVIKA 287
TG MGL R+LT EIVEQ A R + E+G +TN+VFMGMGEPL N ++ A
Sbjct: 131 TGTMGLARNLTPGEIVEQVHRANRRIV-ELGEGQGPRPLTNLVFMGMGEPLANYRSLKVA 189
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
++++ E G +FS R VTVSTSGLVP +++ E+ LA+SLNATTD R+ +MPINR+
Sbjct: 190 LDLLLSEDGPNFSHRHVTVSTSGLVPMIRKLGEETPVKLAISLNATTDAQRDALMPINRR 249
Query: 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
Y L L+E R +N ++ FEYV+L GVNDS +DA RL LV+GIP K+NLI +N
Sbjct: 250 YPLAQLLEACR-SFPIRNGRRITFEYVLLGGVNDSLEDAVRLARLVRGIPTKVNLIPYNA 308
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL---GNPG----AIQA 460
+ G + E+++EF+ LA T +R +RG D AACGQL G PG
Sbjct: 309 NPGLPYRAPAPERVVEFQETLAARNLTAVVRKNRGGDISAACGQLAAEGGPGDPRRPAPP 368
Query: 461 PLLRVP 466
PL R+P
Sbjct: 369 PLTRLP 374
>gi|161170314|gb|ABX59284.1| predicted FeS cluster redox protein [uncultured marine bacterium
EB000_55B11]
gi|297183841|gb|ADI19964.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
Length = 390
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 203/321 (63%), Gaps = 15/321 (4%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFML 197
+W+ LY A +E+ L+KDF+ +L ++ A++ +I+T S DGTRK L +
Sbjct: 55 IWQWLYVKG--AQNFEEMTNLSKDFRNLLVQNF---AITRPEIVTRQISKDGTRKYLLRV 109
Query: 198 DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR 257
G +E V IP + R T+C+SSQ+GC + C FC+TG L R+LT AEIV Q + AR
Sbjct: 110 TGGHEVEAVYIP-EKDRGTLCISSQIGCTLTCTFCHTGTQKLVRNLTPAEIVGQILIARD 168
Query: 258 LL------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL 311
L + + +++N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+
Sbjct: 169 DLDEWGKDAGQKRNVSNIVLMGMGEPLYNTDNVRDAMLIAMDNEGIALSRRRITLSTSGV 228
Query: 312 VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371
VP++ + +E C LA+S +ATTDEVR+ ++PINRK+K+ L+E R N+ ++ F
Sbjct: 229 VPEIIRTGSEIGCMLAISFHATTDEVRDVLVPINRKHKIAELLEACRNYPKLSNSERITF 288
Query: 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431
EYVML +NDS +DA+RL+ L+ GIP KINLI FNP GS + + ++ F +I+ A
Sbjct: 289 EYVMLKNINDSDEDARRLVDLISGIPAKINLIPFNPWPGSGYERSDWNRIEAFGDIVNKA 348
Query: 432 GCTVFLRLSRGDDQMAACGQL 452
G +R RG+D MAA GQL
Sbjct: 349 GYASPIRRPRGEDIMAAXGQL 369
>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
Length = 381
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 210/350 (60%), Gaps = 17/350 (4%)
Query: 113 RVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGD-DIWAHCTDELEGLNKDFKKM 168
R+ L GMS T+L+ + + FR Q LM W G+ D A + L K ++
Sbjct: 13 RINLLGMSRTQLEDFFLGLGEKRFR-AQQLMKWMHHQGECDFSA-----MSNLGKALRER 66
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L+ AE R ++ SSDGTRK L +D G ++ETV+IP + R T+CVSSQVGC+++
Sbjct: 67 LAAIAEVRPPPVESQHDSSDGTRKWLVRVDGGGLVETVLIP-DGNRATLCVSSQVGCSLD 125
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQ---AVFARRLLSSEVGSI-TNVVFMGMGEPLHNVENV 284
C FC TG+ G +R L+AAEI+ Q A+ + S G + TNVV MGMGEPL N +NV
Sbjct: 126 CSFCSTGKQGFQRDLSAAEIIGQVWLAINSYDAFKSGNGRVVTNVVMMGMGEPLLNFDNV 185
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A ++M+ + G S R+VT+STSG+VP L + S +LAVSL+A DE+RN ++P+
Sbjct: 186 VTAMDLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLHAPNDELRNQLVPV 245
Query: 345 NRKYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NR+Y + L+++ R + + + K V EY ++AGVND D A+ L L+ PCKINL
Sbjct: 246 NRRYPIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQARELATLLADFPCKINL 305
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP S + + + F +L AG V +R +RGDD AACGQL
Sbjct: 306 IPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAACGQL 355
>gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
Length = 398
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/341 (43%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L S+DGTRK
Sbjct: 61 FRAKQ-VMRWMHQAG----AQNFEEMTDLAKSLRAKLNEQATIEVPKLMMAQESTDGTRK 115
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 116 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 174
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 175 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 234
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L+ + L +
Sbjct: 235 GMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFI 294
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV+ +PCK NLI FNP S + +T+E + FR+IL
Sbjct: 295 TFEYVMLDGINDKAQHARELIELVKDVPCKFNLIPFNPFPNSGYERSTNENIRVFRDILQ 354
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
G V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 355 QVGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 392
>gi|416213193|ref|ZP_11622177.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
gi|421542612|ref|ZP_15988719.1| 23S rRNA methyltransferase [Neisseria meningitidis NM255]
gi|421554912|ref|ZP_16000851.1| 23S rRNA methyltransferase [Neisseria meningitidis 98008]
gi|254673132|emb|CBA07913.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|325144551|gb|EGC66850.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
gi|402317442|gb|EJU52980.1| 23S rRNA methyltransferase [Neisseria meningitidis NM255]
gi|402332065|gb|EJU67396.1| 23S rRNA methyltransferase [Neisseria meningitidis 98008]
Length = 364
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G++PQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMIPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090]
gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945]
gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18]
gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140]
gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1]
gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|385335912|ref|YP_005889859.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|75356171|sp|Q5F911.1|RLMN_NEIG1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807190|sp|B4RMG2.1|RLMN_NEIG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 364
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 200/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFDEMTDLAKSLRHKLNEQASIEIPKLMMSQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND A LI LV+ +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSSNENIRIFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
A V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAEFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|381166612|ref|ZP_09875826.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Phaeospirillum molischianum DSM 120]
gi|380684185|emb|CCG40638.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Phaeospirillum molischianum DSM 120]
Length = 379
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/346 (42%), Positives = 207/346 (59%), Gaps = 13/346 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHA 173
L G+S +L + + +P +A LW +Y G+ +A + ++K + L+EH
Sbjct: 10 LIGLSRVDLIAAMDAIGEKPFRAKQLWHWMYHRGETDFA----AMSSISKTMQARLAEHF 65
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFC 232
R +++ L SSD TRK L +DG ETV IP + R CVS+QVGC + C+FC
Sbjct: 66 VVRRPTVERELISSDTTRKWLLRFNDGNEAETVYIPDGDEDRGAACVSTQVGCTLTCRFC 125
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLS-----SEVGS-ITNVVFMGMGEPLHNVENVIK 286
+TG L R+L+AAEIV Q + AR L + G ++NVV MGMGEPL+N +NV
Sbjct: 126 HTGTQTLVRNLSAAEIVGQVMVARDSLGEWPTPDDSGRRLSNVVVMGMGEPLYNFDNVAT 185
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
A I++ +G+ S R++T+STSG+VP +K LAVSL+A TDE+R+ IMPIN+
Sbjct: 186 AMEIVMDGEGIGISRRRITLSTSGVVPMMKLCGERLGVNLAVSLHAVTDELRDRIMPINK 245
Query: 347 KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
KY L LI+ R+ N ++ FEY+ML GVNDS DA+ L+ L++G+P K NLI FN
Sbjct: 246 KYPLKELIQACRDYPGASNARRITFEYIMLKGVNDSAADARALLKLIKGLPAKFNLIPFN 305
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P GS+F + F +IL AG + +R+ RG D +AACGQL
Sbjct: 306 PWPGSEFDTPEPRSVKAFSDILQDAGYSAPIRMPRGRDILAACGQL 351
>gi|89052760|ref|YP_508211.1| hypothetical protein Jann_0269 [Jannaschia sp. CCS1]
gi|88862309|gb|ABD53186.1| 23S rRNA m(2)A-2503 methyltransferase [Jannaschia sp. CCS1]
Length = 410
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 202/335 (60%), Gaps = 18/335 (5%)
Query: 129 RSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSD 188
+ R GQ +W+ LY + + + L+KD++ ML+E + S+D
Sbjct: 63 KQAKMRTGQ---IWQWLYQKGVRDFAS--MTNLSKDYRAMLAETFVADVPEVVSRQVSAD 117
Query: 189 GTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
GTRK L + G +E V IP +RG T+C+SSQVGC + C FC+TG L R+LTA E
Sbjct: 118 GTRKYLVRIAGGHEVEVVYIPEVDRG--TLCISSQVGCTLTCSFCHTGTQKLVRNLTAGE 175
Query: 248 IVEQAVFARRLLSSEV----GS------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
I+ Q + AR L V GS ++N+V MGMGEPL+N ENV A I + +G+
Sbjct: 176 IIGQVMLARDDLDEWVPTGEGSDAKPRLVSNIVLMGMGEPLYNFENVRDAMKIAMDPEGI 235
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R++T+STSG+VP++ + E C LAVS +ATTD+VR+ ++PIN+++ + L++ L
Sbjct: 236 SLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHATTDDVRDKLVPINKRWPIADLLDAL 295
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
R+ N+ ++ FEYVML VNDS DA+RL+ L++GIP KINLI FN G+ + +
Sbjct: 296 RDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLIKGIPAKINLIPFNEWPGAPYERSD 355
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ F +I+ AG +R RG+D MAACGQL
Sbjct: 356 WARIEAFADIIYKAGYASPIRTPRGEDIMAACGQL 390
>gi|385855368|ref|YP_005901881.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
Length = 364
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/341 (43%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A +E+ L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQSG----AQNFNEMTDLAKSLRHKLNEQAGIEIPKLMMSQKSSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LT+AEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGRQGFNRNLTSAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND A+ LI LV +PCK NLI FNP S + +++E + FR+IL
Sbjct: 259 TFEYVMLDGINDKAQHARELIELVTDVPCKFNLIPFNPFPNSGYERSSNENIRVFRDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
Length = 364
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 206/357 (57%), Gaps = 18/357 (5%)
Query: 123 ELQQWVRSHA------FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFR 176
+LQ +R A FR Q +M W G A DE+ L K + L+E A
Sbjct: 9 DLQGLIRHFADMGEKPFRAKQ-VMRWIHQSG----AQNFDEMTDLAKSLRHKLNEQANIG 63
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
L SSDGTRK L + G +ETV IP R T+C+SSQVGCA+ C FC TGR
Sbjct: 64 IPKLMMSQESSDGTRKWLLDVGTGNGVETVFIP-ESDRGTLCISSQVGCALECTFCSTGR 122
Query: 237 MGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVH 293
G R+LTAAEI+ Q +A + + + I+NVV MGMGEP+ N +NV+ + +IM+
Sbjct: 123 QGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTSLSIMLD 182
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353
+ G S R+VTVSTSG+VPQ+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L
Sbjct: 183 DHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKEL 242
Query: 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 413
+ R L + FEYVML G+ND A LI LV+ +PCK NLI FNP S +
Sbjct: 243 MAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGY 302
Query: 414 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
++ E + F++IL AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 303 ERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|114797352|ref|YP_762004.1| radical SAM protein [Hyphomonas neptunium ATCC 15444]
gi|122942041|sp|Q0BWY9.1|RLMN_HYPNA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114737526|gb|ABI75651.1| radical SAM enzyme, Cfr family [Hyphomonas neptunium ATCC 15444]
Length = 387
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 200/348 (57%), Gaps = 15/348 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALML------WKRLYGDDIWAHCTDELEGLNKDFKKML 169
L G+S L+ + + P A M W +G +A TD + KD + L
Sbjct: 20 LTGLSVPALKAEMEALGLEPKAANMRARQIRRWIHHFGTTDFAAMTD----IAKDLRAQL 75
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+E E + D S DGT+K L G+ E+V IP +CVSSQVGC +NC
Sbjct: 76 AEKFEVERPEIADHQVSRDGTQKWLTRYGPGIEGESVYIPDVGKAGALCVSSQVGCTLNC 135
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI-----TNVVFMGMGEPLHNVENV 284
FC+TG L R+LTAAEIV+Q + AR LS SI TN+VFMGMGEPL+N++NV
Sbjct: 136 TFCHTGTQALVRNLTAAEIVQQVIIARDALSEWPSSIEERRLTNIVFMGMGEPLYNLDNV 195
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+A + + G+ R++TVST+G+ P++ + + LA+SL+AT +++RN ++P+
Sbjct: 196 AEAIDTISDGDGMAIGRRRITVSTAGVAPKIPELGERTGAMLAISLHATNNDLRNELVPL 255
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
NRKY + L + +R N +V FEYVML G+ND+ +A+ L+ L++G+P KINLI
Sbjct: 256 NRKYDIQTLFDAIRAYPGLGNAKRVTFEYVMLKGINDTLAEARDLVKLMKGVPSKINLIP 315
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP GS + + E + EF +L AG +R RG D +AACGQL
Sbjct: 316 FNPWPGSPYECSDWETIEEFAEVLNRAGYASPIRTPRGRDILAACGQL 363
>gi|344923138|ref|ZP_08776599.1| radical SAM enzyme [Candidatus Odyssella thessalonicensis L13]
Length = 366
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 202/340 (59%), Gaps = 8/340 (2%)
Query: 118 GMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA 177
G++ +L++ + +W LY + + +E++ L KD ++ L++
Sbjct: 9 GIAREDLEKEFTDAGIAKFRVKQVWHWLYFQGVRSF--EEMQNLPKDLRQTLTDTYMIHR 66
Query: 178 LSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM 237
+ L S DGT+K L DG E V IP R T+C+SSQVGC + C+FC+TG
Sbjct: 67 PDITKALRSCDGTQKWLLRFADGEEAECVHIP-EVDRGTICISSQVGCTLTCKFCHTGTQ 125
Query: 238 GLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
L R+LT+AEIV Q + AR + I+N+V MGMGEPL+N +NV KA I++
Sbjct: 126 KLVRNLTSAEIVGQLMLARDAFNEWPTPFSNRHISNIVMMGMGEPLYNFDNVAKALKIIM 185
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
+G+ S RK+T+STSG+VP + + E LAVSL+A D++RN ++P+N+KY +
Sbjct: 186 DPEGISLSKRKITLSTSGVVPMMDRCGQEIGVNLAVSLHAVRDDLRNILVPLNKKYPIKE 245
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
LIE R N ++ FEYVML GVND+ +DAK L+ L++GIP KINLI FNP GS
Sbjct: 246 LIEACRRYPGVNNANRITFEYVMLKGVNDTNNDAKELVRLIRGIPAKINLIPFNPWPGST 305
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F +T +++ F I++ AG + +R RG D +AACGQL
Sbjct: 306 FECSTADRIAAFSEIVSKAGYSSPVRTPRGRDILAACGQL 345
>gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
Length = 372
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 205/335 (61%), Gaps = 18/335 (5%)
Query: 126 QWVRSHAFRPGQALMLWKRLYG-DDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDIL 184
Q + +FR QAL W G DI D++ +K + L A+ + L +I+
Sbjct: 21 QELGEKSFRAQQALK-WIHQEGITDI-----DKMSNFSKSLRSRLKTIAQ---IDLPEII 71
Query: 185 ---TSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKR 241
S DGT+K L L D +ETV IP RGR T+CVSSQVGCA+NC FC T + G R
Sbjct: 72 IEKKSEDGTKKWLLRLTDANCVETVFIP-ERGRGTLCVSSQVGCALNCSFCSTAQQGFNR 130
Query: 242 HLTAAEIVEQAVFARRLLSSEV----GSITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
+LT AEI+ Q A R LS + +++N+V MGMGEPL N ++V+KA N+M+ + G
Sbjct: 131 NLTVAEIIGQVWLAVRCLSRDSLRHDHTVSNIVMMGMGEPLLNFDSVVKAMNLMMDDFGY 190
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
FS R+VT+STSG+VP L++ S +LA+SL+A DE+R+ ++PIN+KY L L+E
Sbjct: 191 GFSKRRVTLSTSGVVPALRRLSKASEVSLAISLHAPNDELRDRLVPINKKYPLSELLEVC 250
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
R ++ +V EYVML G+ND + A++LI +++GIP KINLI FNP +++ ++
Sbjct: 251 RNYFRSEHRRRVTMEYVMLEGINDQPEHARQLIKILEGIPVKINLIPFNPFPFARYRRSS 310
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F++IL AG R +RG+D AACGQL
Sbjct: 311 QITIERFKSILVKAGLNTITRKTRGEDIDAACGQL 345
>gi|347759028|ref|YP_004866590.1| radical SAM superfamily protein [Micavibrio aeruginosavorus ARL-13]
gi|347591546|gb|AEP10588.1| radical SAM superfamily protein [Micavibrio aeruginosavorus ARL-13]
Length = 378
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 200/353 (56%), Gaps = 14/353 (3%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
R+ L G++ E+ + H +A +W +Y + + + L +D + L
Sbjct: 18 AGRIALIGLTLPEMIAALEEHGLPKFRAKQVWHWVYHRGVTDF--EAMTNLPRDLRDTLI 75
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQ 230
E + S+DGT K L ++ DG IE V IP R T+CVSSQVGC + C+
Sbjct: 76 EKFSIERPGVMTEQKSTDGTMKWLLVMADGQQIEMVFIP-EADRGTLCVSSQVGCTLTCR 134
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARRLL-----------SSEVGSITNVVFMGMGEPLH 279
FC+TG L R+L EI++Q ++AR +L +++ +TN+V MGMGEPL+
Sbjct: 135 FCHTGTQPLVRNLGPHEILQQIMYARDVLGEWPVAGEKKDANQGRDLTNIVLMGMGEPLY 194
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N NV KA I + E GL S R++T+STSG+VPQ+ Q E N LA+SL+A D VR+
Sbjct: 195 NYANVAKAMQICMDEDGLGISKRRITLSTSGVVPQIVQCGEELNVNLAISLHAPNDAVRS 254
Query: 340 WIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
IMPIN KY L L++ R +N ++ FEYVML VNDS D A+ L L++GIPCK
Sbjct: 255 EIMPINNKYPLAELLDACRNYPGLSDNRRITFEYVMLKDVNDSDDQARELAQLLRGIPCK 314
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+NLI FNP S + ++ ++ F IL G G +R +RG D +AACGQL
Sbjct: 315 VNLIPFNPWPNSPYECSSGNRIHAFARILNGEGYDAPIRKTRGQDILAACGQL 367
>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
gi|387814569|ref|YP_005430055.1| Fe-S protein [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|205829787|sp|A1TZP7.1|RLMN_MARAV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
gi|381339585|emb|CCG95632.1| putative Fe-S containing enzyme (yfgB) [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 369
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 204/349 (58%), Gaps = 13/349 (3%)
Query: 111 GSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
+V L GM +L+ + + FR Q L W G D + D++ ++K ++
Sbjct: 5 AEKVNLLGMPKAKLEAFFETLGEKRFRAQQVLQ-WMHQRGVDDF----DQMTNMSKSLRE 59
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L E AE R + TS DGTRK + +D+G +ETV+IP + R T+CVSSQ+GC++
Sbjct: 60 QLKEVAEIRGPEVVYDETSKDGTRKWVMRMDNGNSVETVLIP-DGERGTLCVSSQIGCSL 118
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---SSEVGSITNVVFMGMGEPLHNVENV 284
+C FC TG+ G R+LTAAEI+ Q ARR ITNVV MGMGEPL N ENV
Sbjct: 119 DCTFCSTGKRGFNRNLTAAEIIGQVWVARRAFMPFDPNDRPITNVVMMGMGEPLLNFENV 178
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A N+M+ + S R+VT+STSG+VP L + ++ +LA+SL+A DE+RN ++P+
Sbjct: 179 VDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLHAPNDELRNQLVPL 238
Query: 345 NRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
N+KY + L+ R L + K EY ++ GVND + A+ L+ L++G+PCKINLI
Sbjct: 239 NKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELVVLLKGLPCKINLI 298
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S F + F+ +L AG +R +RGDD AACGQL
Sbjct: 299 PFNPFPESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACGQL 347
>gi|205829857|sp|Q28VS6.2|RLMN_JANSC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 392
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 202/335 (60%), Gaps = 18/335 (5%)
Query: 129 RSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSD 188
+ R GQ +W+ LY + + + L+KD++ ML+E + S+D
Sbjct: 45 KQAKMRTGQ---IWQWLYQKGVRDFAS--MTNLSKDYRAMLAETFVADVPEVVSRQVSAD 99
Query: 189 GTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
GTRK L + G +E V IP +RG T+C+SSQVGC + C FC+TG L R+LTA E
Sbjct: 100 GTRKYLVRIAGGHEVEVVYIPEVDRG--TLCISSQVGCTLTCSFCHTGTQKLVRNLTAGE 157
Query: 248 IVEQAVFARRLLSSEV----GS------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
I+ Q + AR L V GS ++N+V MGMGEPL+N ENV A I + +G+
Sbjct: 158 IIGQVMLARDDLDEWVPTGEGSDAKPRLVSNIVLMGMGEPLYNFENVRDAMKIAMDPEGI 217
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R++T+STSG+VP++ + E C LAVS +ATTD+VR+ ++PIN+++ + L++ L
Sbjct: 218 SLSRRRITLSTSGVVPEIAKTAQEIGCQLAVSFHATTDDVRDKLVPINKRWPIADLLDAL 277
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
R+ N+ ++ FEYVML VNDS DA+RL+ L++GIP KINLI FN G+ + +
Sbjct: 278 RDYPRVSNSERITFEYVMLKDVNDSDADARRLVQLIKGIPAKINLIPFNEWPGAPYERSD 337
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ F +I+ AG +R RG+D MAACGQL
Sbjct: 338 WARIEAFADIIYKAGYASPIRTPRGEDIMAACGQL 372
>gi|114568582|ref|YP_755262.1| radical SAM protein [Maricaulis maris MCS10]
gi|122317061|sp|Q0ATR3.1|RLMN_MARMM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114339044|gb|ABI64324.1| 23S rRNA m(2)A-2503 methyltransferase [Maricaulis maris MCS10]
Length = 396
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/359 (40%), Positives = 212/359 (59%), Gaps = 12/359 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GM+ EL+ +A M LW+ +Y + + DE+ ++KD + ++++
Sbjct: 28 LAGMTREELRLVAIDCGVEEKKAKMRAEQLWRWIYHYGVTSF--DEMTNISKDLRAVIAD 85
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
L D S DGTRK L L G+ ETV IP +CVSSQVGC +NC F
Sbjct: 86 KYALHRPKLIDRQVSVDGTRKYLIELAPGVECETVFIPDVARSGALCVSSQVGCTLNCTF 145
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVGSITNVVFMGMGEPLHNVENVIK 286
C+TG L R+LTAAEIV Q + AR L S+E ITN+VFMGMGEPL+N+++V
Sbjct: 146 CHTGTQALVRNLTAAEIVAQVMIARDDLDEWPTSNENRKITNIVFMGMGEPLYNLDHVAT 205
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
+ +I+ +G+ S R+ TVSTSG+VP++++ + LA+SL+AT D +R+ ++P+N+
Sbjct: 206 SIDIISDGEGIAISRRRTTVSTSGVVPKIEELGARTGTMLAISLHATNDTLRDELVPLNK 265
Query: 347 KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
KY L L+ +R N+ +V FEYVML GVNDS +AK L+ L++GIP KINLI FN
Sbjct: 266 KYPLVELMNAIRAYPGLGNSKRVTFEYVMLKGVNDSLAEAKALVKLLKGIPAKINLIPFN 325
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL-GNPGAIQAPLLR 464
P S + + +++ F +++ AG +R RG D AACGQL ++A +LR
Sbjct: 326 PWPKSPYECSDWDQIEAFADVVNKAGYASPIRTPRGRDIFAACGQLRSESQKVKASVLR 384
>gi|406947137|gb|EKD78125.1| hypothetical protein ACD_42C00034G0001 [uncultured bacterium]
Length = 368
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/299 (45%), Positives = 185/299 (61%), Gaps = 2/299 (0%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D++ L+K F++ L L TSSDGTRK LF L DG IETV IP + R
Sbjct: 46 DDMSNLSKLFREKLKAETCITLLETISDQTSSDGTRKFLFRLYDGNAIETVFIP-EKTRG 104
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-SITNVVFMGM 274
T+CVSSQVGCA+NC FC TG+ G R+L+ AEI+ Q R L + +ITNVV MGM
Sbjct: 105 TLCVSSQVGCALNCSFCSTGKEGFNRNLSLAEIIGQVFLVRDKLKDKPRLTITNVVMMGM 164
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATT 334
GEPL N VI+A ++M H+ S +VT+STSG+VP + Q +S +LAVSL+A T
Sbjct: 165 GEPLLNYPPVIEAMDLMTHDLAYGLSKYRVTLSTSGVVPMMLQLKKDSPVSLAVSLHAPT 224
Query: 335 DEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+E+R ++PIN+KY L +L+ R + ++FEYVML +NDS AK+LI L+
Sbjct: 225 NELREQLVPINKKYPLEVLMPVCRNYFPADSKRCIVFEYVMLKNINDSLTHAKQLIRLLD 284
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+PCK+NLI FNP + + + E ++ F+N L AG ++R +RG+D ACGQL
Sbjct: 285 NMPCKVNLIPFNPFPKTNYVCSDMETILAFQNRLTAAGIKTWIRKTRGEDIDGACGQLA 343
>gi|407784579|ref|ZP_11131728.1| hypothetical protein B30_01010 [Celeribacter baekdonensis B30]
gi|407204281|gb|EKE74262.1| hypothetical protein B30_01010 [Celeribacter baekdonensis B30]
Length = 392
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 212/367 (57%), Gaps = 21/367 (5%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HC 154
++ +P+K ++ L G+S +L+ + + QA M +W+ +Y W
Sbjct: 10 DVLTIPRKDPASDKINLVGLSREDLRTVLIENGTPEKQAKMRAGQIWQWIYQ---WGVRD 66
Query: 155 TDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGR 214
++ L K ++ L E R + S DGTRK L ++ G +E V IP GR
Sbjct: 67 FTQMTNLGKAYRDELDAKFEARIPEVVSKQVSEDGTRKYLVRINGGHEVEVVYIP-EEGR 125
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS------- 265
T+C+SSQVGC + C FC+TG L R+LTA EIV Q + AR L E GS
Sbjct: 126 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQVMMARDDLDEWPEKGSRKPDVRL 185
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N ENV A I++ G+ R++T+STSG+VP++ + E C
Sbjct: 186 LSNIVLMGMGEPLYNFENVRDAMKIVMDGDGIALGRRRITLSTSGVVPEIHRTAKEIGCL 245
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LAVS +ATTDE R ++PIN+++ + L++ LR+ N+ ++ FEYVML VNDS +D
Sbjct: 246 LAVSFHATTDETRGMLVPINKRWNIEALLDALRDYPKVSNSERITFEYVMLKDVNDSDED 305
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A RLI L++GIP K+NLI FN G+ + +++ ++ F IL AG +R RG+D
Sbjct: 306 AYRLIKLLEGIPSKVNLIPFNEWPGAPYKRSSNNRIHAFAKILLAAGYASPIRTPRGEDI 365
Query: 446 MAACGQL 452
MAACGQL
Sbjct: 366 MAACGQL 372
>gi|315497788|ref|YP_004086592.1| radical sam enzyme, cfr family [Asticcacaulis excentricus CB 48]
gi|315415800|gb|ADU12441.1| radical SAM enzyme, Cfr family [Asticcacaulis excentricus CB 48]
Length = 411
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 153/357 (42%), Positives = 206/357 (57%), Gaps = 18/357 (5%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
NI L + G LK E ++ A Q + W YG + TD +
Sbjct: 18 NITGLTRDGLIAALKESGVVEERK-----AKMRAQQIWRWVHHYGFTDFDKMTD----IG 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT-TVCVSS 221
KD + LSE + + S DGTRK L + G+ +ETV IP + GR+ +CVSS
Sbjct: 69 KDQRGPLSEKFTLARPEVVERQVSKDGTRKWLIRMAPGIEVETVYIP-DVGRSGALCVSS 127
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGE 276
QVGC +NC FC+TG L R+LTAAEIV Q AR L E ++N+VFMGMGE
Sbjct: 128 QVGCTLNCSFCHTGTQRLVRNLTAAEIVAQVQVARDDLGEWPSPKEDRRLSNIVFMGMGE 187
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL+N++NV A +I+ +G+ S R++TVSTSG+VP+L + LA+SL+AT DE
Sbjct: 188 PLYNLDNVADAIDIISDNEGIAISRRRITVSTSGVVPELDALGKRTAAMLAISLHATNDE 247
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+R+ ++PIN+KY L L+ +R N +V FEYVML GVNDS +A+ LI L++GI
Sbjct: 248 LRDVLVPINKKYPLKDLMAAIRAYPDLSNARRVTFEYVMLKGVNDSPAEARELIKLIKGI 307
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P KINLI FNP G+ + +D + IE F IL AG +R RG D +AACGQL
Sbjct: 308 PAKINLIPFNPWPGTDYQ-CSDWRTIEAFAAILNKAGYASPIRTPRGRDILAACGQL 363
>gi|205829855|sp|Q2W897.2|RLMN_MAGSA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 456
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 206/350 (58%), Gaps = 13/350 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
S+ L G+S +L + S +P +A LW +Y G+ +A T ++K L
Sbjct: 85 SKTNLIGLSRDQLIAEMASIGEKPFRAKQLWHWMYNRGETDFAKMTS----ISKSMHGAL 140
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMN 228
+E R + L S+D TRK L DDG ETV IP + R VC+S+QVGC +
Sbjct: 141 AERYVVRRPGVTKELISADTTRKWLLKFDDGHEAETVYIPDADEERGAVCISTQVGCTLT 200
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFAR----RLLSSEVG--SITNVVFMGMGEPLHNVE 282
C+FC+TG L R+L+AAEIV Q + AR + + G ++N+V MGMGEPL+N E
Sbjct: 201 CRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDDGGRQLSNIVVMGMGEPLYNFE 260
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV A I + +G+ S R++T+STSG+VP +K+ LAVSL+A TDE+R+ IM
Sbjct: 261 NVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSLHAVTDEIRDRIM 320
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L L++ RE N ++ FEY+ML G+NDS DA+ L+ LV+G+P K NL
Sbjct: 321 PINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALLKLVKGLPAKFNL 380
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP GS+F + F +IL AG + +R+ RG D +AACGQL
Sbjct: 381 IPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACGQL 430
>gi|89070636|ref|ZP_01157916.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516]
gi|89043783|gb|EAR49985.1| radical SAM superfamily protein [Oceanicola granulosus HTCC2516]
Length = 392
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/376 (38%), Positives = 219/376 (58%), Gaps = 23/376 (6%)
Query: 96 SDAGGGDNINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGD 148
+DA ++ +P+K R L G++ L + +R+ Q M +W+ +Y
Sbjct: 3 ADAPITQDVLTIPRKIPDSGRTNLVGLTRPALAEALRAAGTPDKQVRMRVNQVWQWIYH- 61
Query: 149 DIWA-HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVV 207
W + + L K ++ +L+E+ E + S+DGTRK L + G +ETV
Sbjct: 62 --WGVRDFEAMTNLAKPYRALLAENFEIALPEIVSRQVSNDGTRKYLVRIAGGHEVETVY 119
Query: 208 IPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL-------- 259
IP R T+C+SSQVGC + C FC+TG L R+LT AEIV Q + AR L
Sbjct: 120 IP-EEDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTPAEIVGQIMLARDDLGEWPAPGT 178
Query: 260 -SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
+ E G ++N+V MGMGEPL+N + V A I + +G+ S R++T+STSG+V ++
Sbjct: 179 GTGESGPRLLSNIVLMGMGEPLYNFDAVRDAMKIAMDGEGIALSRRRITLSTSGVVAEIA 238
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E C LAVS +ATTDEVR+ ++PIN+K+ + L+E+L+ N+ ++ FEYVML
Sbjct: 239 RCAEEIGCMLAVSFHATTDEVRDRLVPINKKWNIETLLESLKAYPKLSNSERITFEYVML 298
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
VNDS DDA+RL+ L++GIP KINLI FN G+ + +++ ++ F +I+ AG
Sbjct: 299 KDVNDSDDDARRLVKLIEGIPAKINLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASP 358
Query: 437 LRLSRGDDQMAACGQL 452
+R RG+D MAACGQL
Sbjct: 359 IRTPRGEDIMAACGQL 374
>gi|83310223|ref|YP_420487.1| Fe-S-cluster redox protein [Magnetospirillum magneticum AMB-1]
gi|82945064|dbj|BAE49928.1| Predicted Fe-S-cluster redox enzyme [Magnetospirillum magneticum
AMB-1]
Length = 546
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 206/350 (58%), Gaps = 13/350 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
S+ L G+S +L + S +P +A LW +Y G+ +A T ++K L
Sbjct: 175 SKTNLIGLSRDQLIAEMASIGEKPFRAKQLWHWMYNRGETDFAKMTS----ISKSMHGAL 230
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMN 228
+E R + L S+D TRK L DDG ETV IP + R VC+S+QVGC +
Sbjct: 231 AERYVVRRPGVTKELISADTTRKWLLKFDDGHEAETVYIPDADEERGAVCISTQVGCTLT 290
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFAR----RLLSSEVGS--ITNVVFMGMGEPLHNVE 282
C+FC+TG L R+L+AAEIV Q + AR + + G ++N+V MGMGEPL+N E
Sbjct: 291 CRFCHTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDDGGRQLSNIVVMGMGEPLYNFE 350
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV A I + +G+ S R++T+STSG+VP +K+ LAVSL+A TDE+R+ IM
Sbjct: 351 NVATALEIAMDGEGIGISKRRITLSTSGVVPMMKECGERLGVNLAVSLHAVTDEIRDRIM 410
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L L++ RE N ++ FEY+ML G+NDS DA+ L+ LV+G+P K NL
Sbjct: 411 PINKKYPLKELMQACREYPGASNARRITFEYIMLKGINDSAADARALLKLVKGLPAKFNL 470
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP GS+F + F +IL AG + +R+ RG D +AACGQL
Sbjct: 471 IPFNPWPGSEFDTPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACGQL 520
>gi|384918062|ref|ZP_10018158.1| radical SAM family protein [Citreicella sp. 357]
gi|384468058|gb|EIE52507.1| radical SAM family protein [Citreicella sp. 357]
Length = 395
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 219/377 (58%), Gaps = 23/377 (6%)
Query: 95 CSDAGGGDNINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYG 147
+DA ++ +P+K G +V L G++ L++ + + QA M LW+ +Y
Sbjct: 2 AADAPITQDLVTIPRKLPEGGKVNLVGLTRDALREALIAAGTPEKQAKMRVNQLWQWVYH 61
Query: 148 DDIWA-HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETV 206
W ++ L K ++ +L +H + + S+DGTRK L + G +E V
Sbjct: 62 ---WGVRDFADMTNLAKPYRALLDDHFQIALPEIVSKQVSTDGTRKYLVRIAGGHEVEVV 118
Query: 207 VIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVG 264
IP R T+C+SSQVGC + C FC+TG L R+LTA EIV Q + AR L VG
Sbjct: 119 YIP-ETDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLDEWPAVG 177
Query: 265 S---------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 315
+ ++N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++
Sbjct: 178 TGTGDAGPRLLSNIVLMGMGEPLYNFDNVRDAMKIAMDGEGIALSRRRITLSTSGVVPEI 237
Query: 316 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375
+ E C +AVS +ATTDEVR+ ++PIN+++ + L+ LRE N+ ++ FEYVM
Sbjct: 238 AKCAEEIGCLMAVSFHATTDEVRDKLVPINKRWNIETLLNALREYPRLSNSERITFEYVM 297
Query: 376 LAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTV 435
L VND+ DA+RL+ L++GIP KINLI FN G+ + + ++ +F +I+ AG
Sbjct: 298 LKDVNDTDADARRLVTLIKGIPAKINLIPFNEWPGAPYERSDPARIRKFADIVYKAGYAS 357
Query: 436 FLRLSRGDDQMAACGQL 452
+R RG+D MAACGQL
Sbjct: 358 PIRTPRGEDIMAACGQL 374
>gi|260432258|ref|ZP_05786229.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416086|gb|EEX09345.1| radical SAM enzyme, Cfr family [Silicibacter lacuscaerulensis
ITI-1157]
Length = 395
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/371 (38%), Positives = 221/371 (59%), Gaps = 28/371 (7%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 155
++ +P+K ++ L G++ L++ + H QA M +W+ +Y W
Sbjct: 10 DVVTIPRKLPEGKINLVGLTRDRLREVLIEHGTPEKQAKMRVNQIWQWIYQ---WGVRDF 66
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNR 212
D++ L K ++ L+EH + + +++T SSDGTRK L + G +E V IP
Sbjct: 67 DQMTNLAKAYRAQLAEHF---VIEIPEVVTRQISSDGTRKYLVRIAGGHEVEVVYIP-EE 122
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SEV 263
R T+C+SSQVGC + C FC+TG L R+LTAAEI+ Q + AR L +E
Sbjct: 123 DRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMMARDDLDEWPTPGAPKNET 182
Query: 264 GSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESN 323
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E
Sbjct: 183 RLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIG 242
Query: 324 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 383
C LA+S +ATTDEVR+ ++PIN+++ + L++ L + N+ ++ FEYVML GVNDS
Sbjct: 243 CLLAISFHATTDEVRDVLVPINKRWNIEELLQALASYPNASNSERITFEYVMLDGVNDSD 302
Query: 384 DDAKRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
+DA RLI ++ IP KINLI FN G+ + +++ ++ F NI+ AG +R +R
Sbjct: 303 EDAHRLIDHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTR 362
Query: 442 GDDQMAACGQL 452
G+D MAACGQL
Sbjct: 363 GEDIMAACGQL 373
>gi|220917417|ref|YP_002492721.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955271|gb|ACL65655.1| radical SAM enzyme, Cfr family [Anaeromyxobacter dehalogenans
2CP-1]
Length = 372
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 192/329 (58%), Gaps = 11/329 (3%)
Query: 142 WKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL 201
W L G A +EL + + ++ L+E L S+DGT K + DG
Sbjct: 39 WLHLRG----AASLEELTDVPRALRERLAEGTRLTTLERATEQRSADGTIKWTWRTGDGK 94
Query: 202 VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA-RRLLS 260
+IE+V +P R T+CVS+QVGCA+ C FC TG MGL R+LT EIV+Q A RRL+
Sbjct: 95 LIESVYMP-ETDRKTLCVSTQVGCAVGCTFCMTGTMGLARNLTPGEIVDQVHRANRRLIE 153
Query: 261 SEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
G +TN+VFMGMGEPL N ++ A ++++ E G +FS R VTVSTSGLVP ++
Sbjct: 154 LGEGEGPRPLTNLVFMGMGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMR 213
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E+ LAVSLNATTD R+ IMPINR+Y L L+ R E K ++ FEYVML
Sbjct: 214 RLGEETQVKLAVSLNATTDAQRDAIMPINRRYPLAELLRACR-EFPMKQGRRITFEYVML 272
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
GVND+ +DA+RL L++GIP K+NLI +N + G F + FR++L T
Sbjct: 273 GGVNDAPEDAERLARLLRGIPAKVNLIPYNENPGLGFAAPAPSAVERFRDLLVARNVTAV 332
Query: 437 LRLSRGDDQMAACGQLGNPGAIQAPLLRV 465
+R +RG D AACGQL G P R
Sbjct: 333 VRKNRGTDIAAACGQLAAEGGPGDPRRRA 361
>gi|388456385|ref|ZP_10138680.1| Fe-S containing enzyme [Fluoribacter dumoffii Tex-KL]
Length = 375
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 207/353 (58%), Gaps = 21/353 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT-----DELEGLNKDFK 166
+V L ++ ++++ + S +P +A + + W H T E+ L+K +
Sbjct: 4 QKVNLLDYNYQQMRELLDSWGEKPYRAQQIIQ-------WIHQTGLSDFTEMTNLSKQLR 56
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
+ L++ A + + SSDGT K L LD G IETV IP R T+CVSSQVGCA
Sbjct: 57 EKLAQRAHIKLPEIIACQKSSDGTHKWLLKLDCGNCIETVFIP-EATRGTLCVSSQVGCA 115
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVE 282
+NC FC T + G R+L+ AEI+ Q A R LS E G +TNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAVRELSLEEGVHDKRVTNVVMMGMGEPLLNFD 175
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A +IM+ + S R+VT+STSG++P+L++ S ALAVSL+A DE+RN ++
Sbjct: 176 NVVSAMSIMMDDFAYGLSKRRVTLSTSGVLPELQRLREVSPVALAVSLHAPNDELRNELV 235
Query: 343 PINRKYKLGLLIETLREELHFKNN--YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY L L+ + +FKN KV FEYVML GVND + A +LI L++ IP K+
Sbjct: 236 PINKKYPLSQLMALCK--TYFKNEPRRKVTFEYVMLKGVNDQPEHANQLIKLLRNIPAKV 293
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI FNP + + ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 294 NLIPFNPFPMTHYERSSQEAIDAFRDKLIAHGINTITRKTRGDDIDAACGQLA 346
>gi|149924885|ref|ZP_01913219.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1]
gi|149814238|gb|EDM73847.1| hypothetical protein PPSIR1_09370 [Plesiocystis pacifica SIR-1]
Length = 382
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 204/360 (56%), Gaps = 23/360 (6%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT-----DELEGLNKD 164
+G + L+GMS EL +++ P + +++G W H D + L+K
Sbjct: 19 RGDKPNLRGMSREELGEFLGRELSAPAYRV---DQVFG---WIHQRRAPDFDAMTNLSKA 72
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L E A L + I + DGTRK+ DG IE+V+IP + T C+SSQVG
Sbjct: 73 DRAKLRERASLDTLEVDTIQRARDGTRKLRLRTADGEAIESVLIPNDERGLTQCISSQVG 132
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG--------SITNVVFMGMGE 276
CA++C+FC T +G +R+L EIV+Q AR LL+ E ITN+V+MGMGE
Sbjct: 133 CALDCRFCATASLGFRRNLDTWEIVDQVARARTLLAEEAEREGARWTPRITNIVYMGMGE 192
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE---SNCALAVSLNAT 333
PLHN V ++ +I+ G + R++TVSTSGLVP +++F E LA+SLNAT
Sbjct: 193 PLHNFNQVRRSLSILTDAGGEAIAGRRITVSTSGLVPAIERFAREGLGEEVGLAISLNAT 252
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
TD VR+ +MPINRK+K+ L+ +R + FEYV+L GVNDS DA RLI LV
Sbjct: 253 TDAVRDEVMPINRKWKIDELLAAVRRVPTSRRRRVT-FEYVLLGGVNDSDADAHRLIELV 311
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ C +N+I FNPH + + + ++ F IL +G V+LR RGDD AACGQL
Sbjct: 312 REFRCHVNVIPFNPHEHAPYRRPSQSRVRAFMAILRRSGVDVWLRTPRGDDIQAACGQLA 371
>gi|85706112|ref|ZP_01037207.1| radical SAM superfamily protein [Roseovarius sp. 217]
gi|85669276|gb|EAQ24142.1| radical SAM superfamily protein [Roseovarius sp. 217]
Length = 392
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 214/367 (58%), Gaps = 21/367 (5%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 155
++ +P+K V L G++ L++ + +H QA M +W+ +Y W
Sbjct: 10 DVLTIPRKLPDGPVNLVGLTRDALREALIAHGTPEKQAKMRVNQIWQWIYQ---WGVRDF 66
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
+ L K ++ L+E+ + S+DGTRK L + G +E V IP R
Sbjct: 67 HAMTNLAKAYRAQLAENFVVTIPEVVSKQVSTDGTRKYLVRIAGGHEVEVVYIP-ETDRG 125
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS------EVGS---- 265
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L+ VG
Sbjct: 126 TLCISSQVGCTLTCSFCHTGTQKLVRNLTAGEIIGQVMLARDDLNEWPRPGEPVGERPRL 185
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
I+N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 186 ISNIVLMGMGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAQEIGCL 245
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LAVS +ATTD VR+ ++PIN+K+ + L++TLR+ N+ ++ FEYVML VNDS D
Sbjct: 246 LAVSFHATTDAVRDALVPINKKWNIATLLDTLRDYPRLSNSERITFEYVMLKDVNDSDAD 305
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A+RL+ L++GIP KINLI FN GS + + +++ F +I+ AG +R RG+D
Sbjct: 306 ARRLVQLIKGIPAKINLIPFNEWPGSPYERSDRDRIQRFADIIYKAGYASPIRTPRGEDI 365
Query: 446 MAACGQL 452
MAACGQL
Sbjct: 366 MAACGQL 372
>gi|224370186|ref|YP_002604350.1| putative SAM-dependent methyltransferase [Desulfobacterium
autotrophicum HRM2]
gi|223692903|gb|ACN16186.1| putative SAM-dependent methyltransferase [Desulfobacterium
autotrophicum HRM2]
Length = 345
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 198/336 (58%), Gaps = 13/336 (3%)
Query: 123 ELQQWVRSH---AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALS 179
EL W ++ +FR GQ ++K LY A DE+ + KD ++ L E+ A+
Sbjct: 11 ELTAWFENNNERSFRGGQ---VFKWLYLRQ--AQTFDEMTDIGKDLRQRLKENFTLSAMV 65
Query: 180 LKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL 239
S DGT K+LF L D IE V+IP + T+C+SSQ GCA C+FC T + G
Sbjct: 66 FDRSEISRDGTEKLLFRLHDNAYIEAVLIP-EKDHFTLCISSQAGCAQGCKFCLTAKGGF 124
Query: 240 KRHLTAAEIVEQAVFARRLLSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVH-EQG 296
R+LT EI+ Q A+ +L+ ++N+VFMGMGEPL N + V++A +IM + G
Sbjct: 125 TRNLTTGEIIGQIRTAKTVLAKRKAQRPLSNIVFMGMGEPLANYDTVVRALSIMTDSDYG 184
Query: 297 LHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356
L S R++T+ST GLVP++ + N++ LAVSLNATTDE R+ +MPINR+Y + L++
Sbjct: 185 LKLSSRRITLSTCGLVPEILRLGNDTEVNLAVSLNATTDETRSMLMPINRRYPMHELLKA 244
Query: 357 LREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPT 416
K K+ FEY+++ VND+ DDAKRLI L+ I K+NLI FN H S F
Sbjct: 245 C-TNFQMKPRKKITFEYILIKNVNDTMDDAKRLITLLLPIRAKVNLIPFNEHDQSDFKRP 303
Query: 417 TDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ E ++ F +L T +R S+GDD AACGQL
Sbjct: 304 SKESILAFLQMLLDHNLTAMVRKSKGDDISAACGQL 339
>gi|330999629|ref|ZP_08323338.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329574135|gb|EGG55711.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 389
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 201/356 (56%), Gaps = 17/356 (4%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKD 164
LP+K V L G L+++ +P +A L W G ++ TD L K
Sbjct: 6 LPQK---VNLLGFDAEGLKKFCEDLGEKPFRAKQLERWIHRRGARDFSEMTD----LAKS 58
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
F+ L + AE R + T++DGTRK L + G +E V IP + GR T+CVSSQ G
Sbjct: 59 FRAKLEKVAEIRGPEIIRDKTAADGTRKWLLDVGSGNAVEMVYIPQD-GRGTLCVSSQAG 117
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-------SITNVVFMGMGEP 277
CAMNC FC TG+ G R+L A+EI+ Q A L ++G I+NVV MGMGEP
Sbjct: 118 CAMNCLFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITDENERVISNVVMMGMGEP 177
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N++ VI + +M+ + S R+VTVSTSGLV Q+ + + ALAVSL+A +E+
Sbjct: 178 LQNLDAVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNEL 237
Query: 338 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
R+ IMP+NRK+ L L+ + L + FEY+++ GVNDS AK LI LVQ IP
Sbjct: 238 RDKIMPVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELITLVQDIP 297
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CK NLI FNP GS + E++ F + L GAG +R RGDD AACGQL
Sbjct: 298 CKFNLIPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQLA 353
>gi|402820217|ref|ZP_10869784.1| hypothetical protein IMCC14465_10180 [alpha proteobacterium
IMCC14465]
gi|402510960|gb|EJW21222.1| hypothetical protein IMCC14465_10180 [alpha proteobacterium
IMCC14465]
Length = 384
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 192/317 (60%), Gaps = 8/317 (2%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG 200
+W LY + D++ L+ ++ L EH L++ + S DGTRK LF L DG
Sbjct: 41 IWSWLYVHGVQE--IDKMTTLSGALREQLGEHHTLERLTISEKQVSEDGTRKYLFKLHDG 98
Query: 201 LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS 260
IETV IP R T+CVSSQVGC +NC FC+TG M L R+L EIV Q + R L+
Sbjct: 99 HEIETVYIP-ETDRGTLCVSSQVGCTLNCTFCHTGTMRLVRNLEPHEIVGQLIAVRDDLA 157
Query: 261 S-----EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 315
+++N+V MGMGEPL+N ++VI A N+M G S R++T+STSG+VP +
Sbjct: 158 DWHNNESKRAVSNIVMMGMGEPLYNTDHVITALNVMSDGDGTALSKRRITLSTSGVVPDI 217
Query: 316 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375
+ + + LA+SL+A D++RN ++P+N+KY + L+E R N ++ FEYVM
Sbjct: 218 ARVGDATGVMLAISLHAVRDDLRNELVPLNKKYPIEELLEACRAYPGLSNARRITFEYVM 277
Query: 376 LAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTV 435
L VNDS DA+ L+ ++ GIP KINLI FNP GS + ++ ++++F +I+ AG
Sbjct: 278 LKDVNDSDADARELVRVLSGIPAKINLIPFNPWPGSPYECSSRNRIMKFADIVNHAGYAS 337
Query: 436 FLRLSRGDDQMAACGQL 452
+R RG D MAACGQL
Sbjct: 338 PVRTPRGRDIMAACGQL 354
>gi|114762064|ref|ZP_01441532.1| radical SAM superfamily protein [Pelagibaca bermudensis HTCC2601]
gi|114545088|gb|EAU48091.1| radical SAM superfamily protein [Roseovarius sp. HTCC2601]
Length = 398
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 185/307 (60%), Gaps = 12/307 (3%)
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTT 216
E+ L K+++ L H E + S DGTRK L + G +E V IP GR T
Sbjct: 69 EMTNLAKEYRAKLDAHFEILLPEIVSKNVSVDGTRKYLVRIAGGHEVEVVYIP-EEGRGT 127
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----------- 265
+C+SSQVGC + C FC+TG L R+LTA EIV Q + AR L
Sbjct: 128 LCISSQVGCTLTCSFCHTGTQKLVRNLTAGEIVGQIMLARDDLDEWPEPGTGTGEGGPRL 187
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 188 LSNIVLMGMGEPLYNFDNVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIAKCAKEIGCL 247
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
+AVS +ATTDEVRN ++PIN+++ + L+ LRE N+ ++ FEYVML VNDS D
Sbjct: 248 MAVSFHATTDEVRNKLVPINKRWNIETLLNALREYPRLSNSERITFEYVMLKDVNDSDAD 307
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A+RL+ L++GIP KINLI FN G+ + + E++ F +I+ AG +R RG+D
Sbjct: 308 ARRLVNLIKGIPAKINLIPFNEWPGAPYQRSDWERIERFADIVYKAGYASPIRTPRGEDI 367
Query: 446 MAACGQL 452
MAACGQL
Sbjct: 368 MAACGQL 374
>gi|452966202|gb|EME71216.1| Fe-S-cluster redox protein [Magnetospirillum sp. SO-1]
Length = 375
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/346 (42%), Positives = 202/346 (58%), Gaps = 13/346 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHA 173
L G+S +L + +P +A LW +Y G+ +A T ++K L+E
Sbjct: 8 LIGLSRDQLIAEMAQIGEKPFRAKQLWHWMYNRGETDFAKMT----SISKSMHGALAERY 63
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFC 232
R + LTS+D TRK L DDG ETV IP + R VC+S+QVGC + C+FC
Sbjct: 64 VVRRPQVTRELTSTDTTRKWLLKFDDGHEAETVYIPDADEDRGAVCISTQVGCTLTCRFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFAR----RLLSSEVGS--ITNVVFMGMGEPLHNVENVIK 286
+TG L R+L+AAEIV Q + AR + + G ++N+V MGMGEPL+N ENV
Sbjct: 124 HTGTQLLVRNLSAAEIVGQFMVARDSYGEWPTPDDGGRRLSNIVVMGMGEPLYNFENVAT 183
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
A I + +G+ S R++T+STSG+VP +K+ LA+SL+A TDE+R+ IMPIN+
Sbjct: 184 ALEIAMDGEGIGISRRRITLSTSGVVPMMKECGERLGVNLAISLHAVTDEIRDRIMPINK 243
Query: 347 KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
KY L L+ RE N ++ FEY+ML GVNDS DA+ L+ LV+G+P K NLI FN
Sbjct: 244 KYPLAELMRACREYPGASNARRITFEYIMLKGVNDSAADARALLKLVKGLPAKFNLIPFN 303
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P GS+F F +IL AG + +R+ RG D +AACGQL
Sbjct: 304 PWPGSEFETPDIRTTKAFSDILQDAGYSAPIRMPRGRDILAACGQL 349
>gi|402771059|ref|YP_006590596.1| ribosomal RNA large subunit methyltransferase N [Methylocystis sp.
SC2]
gi|401773079|emb|CCJ05945.1| Ribosomal RNA large subunit methyltransferase N [Methylocystis sp.
SC2]
Length = 396
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 215/375 (57%), Gaps = 27/375 (7%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N++ P + L GM+ E+ +R+ A + M +++ + D E LN
Sbjct: 5 NLSAAPTMTLQPSLAGMTRAEIGDALRALALPEREIRMRVSQIWHWVYFRGARDFGEMLN 64
Query: 163 KDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFML------DDGLVIETVVIPCNRG 213
K M ++ A+ AL L +I+ S DGTRK L L D G +E V IP
Sbjct: 65 VS-KAMRTQLADAFALRLPEIVEEQISVDGTRKWLLRLQPVDAFDKGAEVECVYIP-ESD 122
Query: 214 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG--------- 264
R T+CVSSQVGC +NC FC+TG L R+LT+AEIV Q + ARR L G
Sbjct: 123 RGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTSAEIVGQLLVARRRLGDFPGRERPTDGLV 182
Query: 265 -------SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQ 317
+++N+VFMGMGEPL+N++NV+ A IM GL S R++TVSTSG+VPQ+++
Sbjct: 183 PSGEGVRAVSNIVFMGMGEPLYNLDNVMAAVEIMADGDGLALSKRRITVSTSGVVPQIER 242
Query: 318 FLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 377
E ALA+SL+A D +RN ++P+NRKY + L++ R+ N ++ FEYVML
Sbjct: 243 LGAECGPALAISLHAVRDGLRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLK 302
Query: 378 GVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 437
GVNDS DAK L+ L++G+P KINLI FNP G+ + + E + F +I+ AG +
Sbjct: 303 GVNDSPADAKELVRLLKGLPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPV 362
Query: 438 RLSRGDDQMAACGQL 452
R RG D +AACGQL
Sbjct: 363 RTPRGRDILAACGQL 377
>gi|303257588|ref|ZP_07343600.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
gi|302859558|gb|EFL82637.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
Length = 384
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 198/350 (56%), Gaps = 14/350 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G L+++ +P +A L W G ++ TD L K F+ L
Sbjct: 3 QKVNLLGFDAEGLKKFCEDLGEKPFRAKQLERWIHRRGARDFSEMTD----LAKSFRAKL 58
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ AE R + T++DGTRK L + G +E V IP + GR T+CVSSQ GCAMNC
Sbjct: 59 EKVAEIRGPEIIRDKTAADGTRKWLLDVGSGNAVEMVYIPQD-GRGTLCVSSQAGCAMNC 117
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-------SITNVVFMGMGEPLHNVE 282
FC TG+ G R+L A+EI+ Q A L ++G I+NVV MGMGEPL N++
Sbjct: 118 LFCSTGKQGFNRNLKASEIIGQLRHAEHTLRKDLGITDENERVISNVVMMGMGEPLQNLD 177
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
VI + +M+ + S R+VTVSTSGLV Q+ + + ALAVSL+A +E+R+ IM
Sbjct: 178 AVIPSLKLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIM 237
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
P+NRK+ L L+ + L + FEY+++ GVNDS AK LI LVQ IPCK NL
Sbjct: 238 PVNRKHPLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELITLVQDIPCKFNL 297
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP GS + E++ F + L GAG +R RGDD AACGQL
Sbjct: 298 IPFNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQL 347
>gi|406915762|gb|EKD54811.1| hypothetical protein ACD_60C00041G0002 [uncultured bacterium]
Length = 381
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 146/348 (41%), Positives = 205/348 (58%), Gaps = 13/348 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYG-DDIWAHCTDELEGLNKDFKKM 168
+++ L G+S E++ + S +P +A ++ W G DI A + ++K ++
Sbjct: 8 NKINLLGLSRKEMEAFCMSLGEKPYRATQILKWIHFQGVRDIHA-----MSNISKALREK 62
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
+S AE + TS DGT K + L DG IETV IP + R T+CVSSQVGC +N
Sbjct: 63 ISAIAEILPPEIAYENTSLDGTHKWVLRLADGNCIETVFIP-EKTRGTLCVSSQVGCTLN 121
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENV 284
C FC TG+ G R+LTA EI+ Q A R LS + G ++TNVV MGMGEPL N ENV
Sbjct: 122 CDFCSTGKQGFNRNLTAHEIIGQLFIAVRSLSKQQGLHDHAVTNVVMMGMGEPLLNFENV 181
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A NIM+ + G S R+VT+ST+G++P + + S+ ALAVSL+A TDE+RN ++P+
Sbjct: 182 VNAMNIMLDDFGYGLSKRRVTLSTAGVIPAMYELRKVSDVALAVSLHAPTDELRNVLVPL 241
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
N+KY L L+ +E V EYVMLAG+NDS A++LI L++G+ K+NLI
Sbjct: 242 NKKYPLKELMTACKEYFKEDKRRYVTMEYVMLAGINDSDQHAQQLIRLLKGVRAKVNLIP 301
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP + + + + FR L AG R +RGD AACGQL
Sbjct: 302 FNPFPNTAYKRSDQPTIDRFRETLMRAGINAITRKTRGDAIDAACGQL 349
>gi|126738619|ref|ZP_01754324.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6]
gi|126720418|gb|EBA17124.1| radical SAM enzyme, Cfr family protein [Roseobacter sp. SK209-2-6]
Length = 396
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 216/370 (58%), Gaps = 25/370 (6%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAH 153
+I +P+K G ++ L G++ ++++ + H QA M +W+ +Y G +A
Sbjct: 10 DILTVPRKEPEGGKINLVGLTRDKMREVLIEHGTPEKQAKMRVGQIWQWIYQWGKRDFAD 69
Query: 154 CTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG 213
T+ L K ++ L EH E R + S+DGTRK L + G +E V IP
Sbjct: 70 MTN----LAKAYRAQLDEHFEIRIPEVVSKQVSTDGTRKYLVRIAGGHEVEVVYIP-EED 124
Query: 214 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SEVG 264
R T+C+SSQVGC + C FC+TG L R+LT E++ Q + AR L E
Sbjct: 125 RGTLCISSQVGCTLTCSFCHTGTQKLVRNLTPGEVIGQVMMARDDLEEWPIPGAPKDETR 184
Query: 265 SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNC 324
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 185 LLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAQEIGC 244
Query: 325 ALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFD 384
LA+S +ATT++VR+ ++PIN+++ + L++ L + N+ ++ FEYVML VNDS +
Sbjct: 245 LLAISFHATTNDVRDVLVPINKRWNIDALLQALADYPKASNSERITFEYVMLKDVNDSDE 304
Query: 385 DAKRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
DA RLI ++ IP KINLI FN GS + +++ ++ F NI+ AG +R +RG
Sbjct: 305 DAHRLIEHIKRYNIPAKINLIPFNEWPGSPYQRSSNNRIRAFANIIYQAGYASPIRKTRG 364
Query: 443 DDQMAACGQL 452
DD MAACGQL
Sbjct: 365 DDIMAACGQL 374
>gi|221133865|ref|ZP_03560170.1| hypothetical protein GHTCC_02964 [Glaciecola sp. HTCC2999]
Length = 389
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 204/358 (56%), Gaps = 13/358 (3%)
Query: 102 DNINVLPKKGSRVL-LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEG 160
+N + P K + +L L E + FR Q +M W +G DE+
Sbjct: 10 NNASQAPTKKTNLLDLTRSGMREFLSSIGEKPFRADQ-IMQWIYHHG----VSSVDEMSN 64
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK K L+ HAE A + ++DGT K L+ G +E V IP R T+CVS
Sbjct: 65 INKQLKAKLNTHAEIVAPEIAYQQNATDGTIKFALTLNGGQEVEAVWIP-ETDRATLCVS 123
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA--VFARRLLSSEVGS--ITNVVFMGMGE 276
SQVGCA+ C FC T + G R+L+ +EI+ Q V LS + ITNVV MGMGE
Sbjct: 124 SQVGCALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSKDTAKRPITNVVMMGMGE 183
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N++NV+ A +M+ + G S R+VT+STSG+VP L ++ + ALA+SL+A D
Sbjct: 184 PLLNLKNVVPAMELMMDDYGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPNDT 243
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ I+P+N+KY + + +R L N KV EYVML+ +NDS D A L ++
Sbjct: 244 LRDEIVPVNKKYNIETFLAGVRRYLDKSKANQGKVTVEYVMLSHINDSTDQAHELAKVLS 303
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
G PCKINLI FNP+ GS +T +++ ++ F +L AG TV +R +RGDD AACGQL
Sbjct: 304 GTPCKINLIPFNPYPGSPYTCSSNSRIDRFSKVLMAAGYTVMVRKTRGDDIDAACGQL 361
>gi|58038729|ref|YP_190693.1| Fe-S-cluster redox protein [Gluconobacter oxydans 621H]
gi|81352583|sp|Q5FUA9.1|RLMN_GLUOX RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|58001143|gb|AAW60037.1| Putative Fe-S-cluster redox enzyme [Gluconobacter oxydans 621H]
Length = 407
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 203/348 (58%), Gaps = 16/348 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY---GDDIWAHCTDELEGLNKDFKKMLSEH 172
L G+S EL + +P +A LW +Y D A T + K + L+EH
Sbjct: 50 LVGLSREELAALMTEIGEKPFRAKQLWHWIYHQGATDFSAMTT-----IAKPMQAKLAEH 104
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQF 231
+ TS D TRK LF DG ETV IP R R VC+SSQVGC ++C F
Sbjct: 105 FVVSRPTTATEQTSVDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTF 164
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLL------SSEVGS-ITNVVFMGMGEPLHNVENV 284
C+TG L R+L AEIV Q + AR S+++ ++ +V MGMGEPL+N ENV
Sbjct: 165 CHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPSPSADMPRYLSTIVLMGMGEPLYNYENV 224
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
KA I++ +G+ S R++T+STSG+VP + + +E LA+SL+A T+E+R+ I+P+
Sbjct: 225 AKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNELRDQIVPL 284
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
NRKY + LI R N+ ++ FEY+ML GVNDS DA+ L+ L++ +P K+NLI
Sbjct: 285 NRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIRDLPAKVNLIP 344
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP GS F P+T +++ +F NI+ AG +R RG D +AACGQL
Sbjct: 345 FNPWPGSDFQPSTRQQLTKFANIVMDAGFASPIRTPRGQDILAACGQL 392
>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
gi|81368632|sp|Q5WWH4.1|RLMN_LEGPL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
Length = 382
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 207/351 (58%), Gaps = 19/351 (5%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+V L ++ +L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYLQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 60
Query: 171 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 226
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 61 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 115
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNDGTHDKKITNVVMMGMGEPLLNFD 175
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 176 NVVSAMNIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSPVALAVSLHAPTDELRNELV 235
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 236 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 295
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 346
>gi|205829854|sp|B1M1U6.2|RLMN_METRJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 424
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 206/369 (55%), Gaps = 34/369 (9%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFK 166
L + + L GM E R R GQ + W G +A T+ + K K
Sbjct: 37 LTRDALKAQLIGMGVPE-----RESRMRAGQ-VWHWVNFRGASDFAEMTN----VGKALK 86
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFML--------DDGLVIETVVIPCNRGRTTVC 218
L+EH + S DGTRK L + + G IE V IP R T+C
Sbjct: 87 AQLAEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIP-GPDRGTLC 145
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------------SSEVG 264
VSSQVGC + C FC+TG L R+L+AAEIV+Q V AR L S EVG
Sbjct: 146 VSSQVGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVG 205
Query: 265 S-ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESN 323
+TN+VFMGMGEPL+N++ V+ A +M ++GL S R++TVSTSG+VPQ+ + ++N
Sbjct: 206 RLVTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQAN 265
Query: 324 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 383
LA+SL+A D++R+ ++P+NRKY + L+ R N ++ FEYVML GVNDS
Sbjct: 266 AMLAISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSD 325
Query: 384 DDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
DA+ L+ L++GIP KINLI FNP GS++ + +++ F I+ AG +R RG
Sbjct: 326 ADARELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGR 385
Query: 444 DQMAACGQL 452
D +AACGQL
Sbjct: 386 DILAACGQL 394
>gi|397667169|ref|YP_006508706.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395130580|emb|CCD08825.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 208/351 (59%), Gaps = 19/351 (5%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+V L ++++L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 60
Query: 171 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 226
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 61 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 115
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFD 175
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 176 NVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELV 235
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 236 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 295
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 346
>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777412|ref|YP_005185849.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508226|gb|AEW51750.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 386
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 208/351 (59%), Gaps = 19/351 (5%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+V L ++++L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 9 KVNLLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 64
Query: 171 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 226
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 65 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 119
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 120 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFD 179
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 180 NVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELV 239
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 240 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 299
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 300 IPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 350
>gi|170747554|ref|YP_001753814.1| radical SAM protein [Methylobacterium radiotolerans JCM 2831]
gi|170654076|gb|ACB23131.1| radical SAM enzyme, Cfr family [Methylobacterium radiotolerans JCM
2831]
Length = 430
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/369 (40%), Positives = 206/369 (55%), Gaps = 34/369 (9%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFK 166
L + + L GM E R R GQ + W G +A T+ + K K
Sbjct: 43 LTRDALKAQLIGMGVPE-----RESRMRAGQ-VWHWVNFRGASDFAEMTN----VGKALK 92
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFML--------DDGLVIETVVIPCNRGRTTVC 218
L+EH + S DGTRK L + + G IE V IP R T+C
Sbjct: 93 AQLAEHFTLERPEVASRQVSRDGTRKWLLRMAPTNRQEHNRGAEIECVYIP-GPDRGTLC 151
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------------SSEVG 264
VSSQVGC + C FC+TG L R+L+AAEIV+Q V AR L S EVG
Sbjct: 152 VSSQVGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVTARDELGDWPGQMPSRDAGGSGEVG 211
Query: 265 S-ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESN 323
+TN+VFMGMGEPL+N++ V+ A +M ++GL S R++TVSTSG+VPQ+ + ++N
Sbjct: 212 RLVTNIVFMGMGEPLYNLDAVVDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEQAN 271
Query: 324 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 383
LA+SL+A D++R+ ++P+NRKY + L+ R N ++ FEYVML GVNDS
Sbjct: 272 AMLAISLHAVRDDLRDELVPLNRKYPIAELLAACRAYPGLSNARRITFEYVMLKGVNDSD 331
Query: 384 DDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
DA+ L+ L++GIP KINLI FNP GS++ + +++ F I+ AG +R RG
Sbjct: 332 ADARELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSEIVFNAGYASPVRTPRGR 391
Query: 444 DQMAACGQL 452
D +AACGQL
Sbjct: 392 DILAACGQL 400
>gi|421863302|ref|ZP_16295001.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 364
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 155/357 (43%), Positives = 206/357 (57%), Gaps = 18/357 (5%)
Query: 123 ELQQWVRSHA------FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFR 176
+LQ +R A FR Q +M W G A DE+ L K + L+E A
Sbjct: 9 DLQGLIRHFADMGEKPFRAKQ-VMRWIHQSG----AQNFDEMTDLAKSLRHKLNEQANIG 63
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
L SSDGTRK L + G +ETV IP + R T+C+SSQVGCA+ C FC TGR
Sbjct: 64 IPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESE-RGTLCISSQVGCALECTFCSTGR 122
Query: 237 MGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVH 293
G R+LTAAEI+ Q +A + + + I+NVV MGMGEP+ N +NV+ A +IM+
Sbjct: 123 QGFNRNLTAAEIIGQLWWANKAMGVTPKNERVISNVVMMGMGEPMANFDNVVTALSIMLD 182
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353
+ G S R+VTVSTSG+V Q+ + + ALAVSL+A+ DEVR+ I+P+N+KY L L
Sbjct: 183 DYGYGLSRRRVTVSTSGMVSQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKKYPLKEL 242
Query: 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 413
+ R L + FEYVML GVND A LI LV+ +PCK NLI FNP S +
Sbjct: 243 MAACRRYLVKAPRDFITFEYVMLDGVNDKAQHAHELINLVKDVPCKFNLIPFNPFPNSGY 302
Query: 414 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
++ E + F++IL AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 303 ERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|205829856|sp|Q5ZV93.2|RLMN_LEGPH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
Length = 382
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 208/351 (59%), Gaps = 19/351 (5%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+V L ++++L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 60
Query: 171 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 226
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 61 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 115
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFD 175
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 176 NVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELV 235
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 236 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 295
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 346
>gi|46201028|ref|ZP_00207935.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
magnetotacticum MS-1]
Length = 375
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/350 (41%), Positives = 206/350 (58%), Gaps = 13/350 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
+++ L G+S +L + + +P +A LW +Y G+ +A T ++K L
Sbjct: 4 TKINLIGLSRDQLIAEMAAIGEKPFRAKQLWHWMYNRGETDFAKMT----SISKSMHGAL 59
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMN 228
+E R + L S+D TRK L DDG ETV IP + R VC+S+QVGC +
Sbjct: 60 AERYVVRRPQMTKELISADTTRKWLLKFDDGHEAETVYIPDADEDRGAVCISTQVGCTLT 119
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFAR----RLLSSEVG--SITNVVFMGMGEPLHNVE 282
C+FC+TG L R+LTAAEIV Q + AR + + G ++N+V MGMGEPL+N E
Sbjct: 120 CRFCHTGTQLLVRNLTAAEIVGQFMVARDSYGEWPTPDDGGRQLSNIVVMGMGEPLYNFE 179
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV A I + +G+ S R++T+STSG+VP +K LAVSL+A TDE+R+ IM
Sbjct: 180 NVATALEIAMDGEGIGISKRRITLSTSGVVPMMKICGERLGVNLAVSLHAVTDEIRDRIM 239
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L L++ R+ N ++ FEY+ML GVNDS DA+ L+ L++G+P K NL
Sbjct: 240 PINKKYPLKELMQACRDYPGASNARRITFEYIMLKGVNDSAADARALLKLIKGLPAKFNL 299
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP GS+F + F +IL AG + +R+ RG D +AACGQL
Sbjct: 300 IPFNPWPGSEFETPDIKTTKAFSDILQDAGYSAPIRMPRGRDILAACGQL 349
>gi|393769945|ref|ZP_10358461.1| Ribosomal RNA large subunit methyltransferase N [Methylobacterium
sp. GXF4]
gi|392724610|gb|EIZ81959.1| Ribosomal RNA large subunit methyltransferase N [Methylobacterium
sp. GXF4]
Length = 424
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 150/369 (40%), Positives = 206/369 (55%), Gaps = 34/369 (9%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFK 166
L + + L GM E R R GQ + W G +A T+ + K K
Sbjct: 37 LTRDALKAQLIGMGVPE-----RESRMRAGQ-IWHWVNFRGATDFAAMTN----VGKALK 86
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFML--------DDGLVIETVVIPCNRGRTTVC 218
L+ H + S DGTRK L + + G IE V IP + R T+C
Sbjct: 87 AELARHFTLERPEVASRQVSRDGTRKWLLRMAPTNPQEHNRGAEIECVYIP-SPDRGTLC 145
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------------SSEVG 264
VSSQVGC + C FC+TG L R+L+AAEIV+Q V AR L + EVG
Sbjct: 146 VSSQVGCTLTCSFCHTGTQRLVRNLSAAEIVQQLVVARDELGDWAGQMPSRDASGAGEVG 205
Query: 265 S-ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESN 323
+TN+VFMGMGEPL+N++ VI A +M ++GL S R++TVSTSG+VPQ+ + +N
Sbjct: 206 RLVTNIVFMGMGEPLYNLDAVIDAVGVMSDQEGLGLSRRRITVSTSGVVPQIPRLGEAAN 265
Query: 324 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 383
LA+SL+A D++RN ++P+NRKY + L+E R N ++ FEYVML GVNDS
Sbjct: 266 AMLAISLHAVRDDLRNELVPLNRKYPIAQLLEACRTYPGVSNARRITFEYVMLKGVNDSD 325
Query: 384 DDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
DA+ L+ L++GIP KINLI FNP GS++ + +++ F I+ AG +R RG
Sbjct: 326 ADARELVRLLKGIPAKINLIPFNPWPGSRYECSDWDRIERFSGIVFNAGYASPVRTPRGR 385
Query: 444 DQMAACGQL 452
D +AACGQL
Sbjct: 386 DILAACGQL 394
>gi|330504682|ref|YP_004381551.1| radical SAM protein [Pseudomonas mendocina NK-01]
gi|328918968|gb|AEB59799.1| radical SAM protein [Pseudomonas mendocina NK-01]
Length = 382
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 207/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G D +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFESIGEKRFRAGQ-VMKWIHHFGVDDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP N GR T+CVSSQ GCA++C
Sbjct: 62 EASAEIRGPEVVSENISADGTRKWVVRVASGSCVETVYIPQN-GRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LT+AEI+ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 SAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRNQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L GVND + A+++I L+ +PCKINLI
Sbjct: 241 KKYPLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQLEHAEQMIALLADVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L AG V +R +RGDD AACGQL
Sbjct: 301 FNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRATRGDDIDAACGQL 348
>gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
Length = 380
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/352 (41%), Positives = 211/352 (59%), Gaps = 21/352 (5%)
Query: 113 RVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYG-DDIWAHCTDELEGLNKDFKKM 168
+V L GMS +++ + + FR GQ +M W +G DI A T L K ++
Sbjct: 16 KVNLLGMSRAQMEVFFTDLGEKRFRAGQ-VMKWIHHHGVSDIEAMTT-----LGKALRER 69
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
LS AE R + D S+DGTRK +D G ++E V+IP R T+CVSSQVGC+++
Sbjct: 70 LSSIAEVRPPEIADQKDSADGTRKWAIRVDGGALVEAVLIP-EGSRATLCVSSQVGCSLD 128
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARR----LLSSEVGSITNVVFMGMGEPLHNVENV 284
C+FC TG+ G +R LT+AEI+ Q A + S + +TNVV MGMGEPL N +NV
Sbjct: 129 CKFCSTGKQGFQRDLTSAEIIGQVWLAIKSYDAFQSGKGRVVTNVVMMGMGEPLLNFDNV 188
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ + ++M + S R+VT+STSG+VP L + S+ +LA+SL+ TDE+RN I+PI
Sbjct: 189 VSSMSLMTDDWAYGLSKRRVTLSTSGVVPALDKLAECSDVSLAISLHGPTDEIRNRIVPI 248
Query: 345 NRKYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N++Y + L+ + R + +++ K V EY +LAGVND + A++L L++ PCKINL
Sbjct: 249 NKRYPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLAVLLKDFPCKINL 308
Query: 403 ISFN--PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FN PH G FT + + F +L AG V +R +RGDD AACGQL
Sbjct: 309 IPFNDFPHSG--FTRPSGNAVSRFWQVLIDAGYVVTVRTTRGDDIDAACGQL 358
>gi|162147642|ref|YP_001602103.1| hypothetical protein GDI_1858 [Gluconacetobacter diazotrophicus PAl
5]
gi|209542271|ref|YP_002274500.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786219|emb|CAP55801.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209529948|gb|ACI49885.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
PAl 5]
Length = 404
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 208/365 (56%), Gaps = 30/365 (8%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLN 162
VLP G R L+ G+S EL Q + +P + LW +Y + TD + +
Sbjct: 40 GVLPD-GRRELV-GLSREELTQALVEIGEKPFRTKQLWHWIYHQGV----TDFARMSSIA 93
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSS 221
K + L+E + TS+D TRK LF DG ETV IP R R VC+SS
Sbjct: 94 KPLQAKLAERFVVGRPDAAMVQTSTDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISS 153
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSIT 267
QVGC ++C FC+TG L R+L AAEIV Q + AR RLLS+
Sbjct: 154 QVGCTLSCTFCHTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPKGDTPRLLST------ 207
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
+V MGMGEPL+N EN+ KA I++ +G+ S R++T+STSG++P + Q +E LA
Sbjct: 208 -IVLMGMGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGSELGINLA 266
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A +++R+ I+P+NRKY + LI R N ++ FEY+ML GVNDS +A+
Sbjct: 267 ISLHAVRNDLRDEIVPLNRKYPIEDLIAACRRYPTASNARRITFEYIMLRGVNDSEAEAR 326
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
L+ L+ GIP K+NLI FNP GS + P+T E++ +F I+ AG +R+ RG D +A
Sbjct: 327 ELVRLIAGIPAKVNLIPFNPWPGSAYKPSTREQLAKFAQIVMDAGFASPIRMPRGRDILA 386
Query: 448 ACGQL 452
ACGQL
Sbjct: 387 ACGQL 391
>gi|154251833|ref|YP_001412657.1| radical SAM protein [Parvibaculum lavamentivorans DS-1]
gi|205829796|sp|A7HSW7.1|RLMN_PARL1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|154155783|gb|ABS63000.1| radical SAM enzyme, Cfr family [Parvibaculum lavamentivorans DS-1]
Length = 399
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 196/334 (58%), Gaps = 20/334 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
R GQ +W LY + + L+K+ + L++ + L + S DGTRK
Sbjct: 48 MRAGQ---IWNGLYNRGFTDF--ERMTTLSKELRGKLADAFDISRLEIVTEQKSVDGTRK 102
Query: 193 ILFMLDDGL------VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAA 246
L L G+ +ETV IP GR T+CVSSQVGC + C FC+TG L R+LTA
Sbjct: 103 WLLRLPSGIPGVPGPEVETVYIP-EEGRGTLCVSSQVGCTLTCTFCHTGTQKLVRNLTAG 161
Query: 247 EIVEQAVFARRLL--------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 298
EIV Q + AR L +SE ITN+V MGMGEPL+N ENV A ++ +GL
Sbjct: 162 EIVGQILLARDALGEWPDGGRNSEDRLITNIVMMGMGEPLYNFENVRDALEVVSDGEGLS 221
Query: 299 FSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
S R++T+STSG+VP +++ E C LA+SL+A DE RN ++P+N+KY + L+E R
Sbjct: 222 LSKRRITLSTSGVVPMIERAGEEIGCMLAISLHAVDDETRNRLVPLNKKYPIAELLEACR 281
Query: 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
N ++ FEYVML GVNDS +DAK L+ L++ IP KINLI FNP GS + +
Sbjct: 282 NYPGVSNARRITFEYVMLKGVNDSLEDAKALVRLLKHIPAKINLIPFNPWPGSPYECSDW 341
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
E++ +F +++ AG +R RG D MAACGQL
Sbjct: 342 EQIEKFADVVNRAGYASPVRTPRGRDIMAACGQL 375
>gi|31789482|gb|AAP58595.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 396
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 190/312 (60%), Gaps = 17/312 (5%)
Query: 151 WAH--CTDELEGLNKDFKKMLSEHAEFR-ALSLKDIL---TSSDGTRKILFMLDDGLVIE 204
W H +EG+ D K L + LS I+ TS+DGTRK++ L D IE
Sbjct: 72 WIHRRAATSVEGMT-DLSKALRTRLDHEFTLSTPRIVGDETSADGTRKLVLELADRRRIE 130
Query: 205 TVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG 264
+V IP + T CVS+QVGCAM C FC TG+MGL RHLTA EI Q R+L+S G
Sbjct: 131 SVFIP-DTPAMTFCVSTQVGCAMACGFCLTGKMGLVRHLTAGEIAGQV----RVLASATG 185
Query: 265 SIT---NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
+ N+V MGMGEPLHN +N +KA ++ E GL SPR+VT+ST G+VP L++ E
Sbjct: 186 LLDQSFNIVLMGMGEPLHNYDNTMKALRMLHAEAGLAVSPRRVTLSTVGIVPGLERLAKE 245
Query: 322 SNCA-LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 380
S LAVSL+ATTDE R ++P NRKY L +++ R K ++ FEYV+L GVN
Sbjct: 246 SLMPNLAVSLHATTDEQRTALVPPNRKYPLAAILDACRA-FPLKKRNRITFEYVLLEGVN 304
Query: 381 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 440
D+ +DAKRL+ L+ GI K+NLI NP G F+ D ++ F ++LA A TV +R S
Sbjct: 305 DTPEDAKRLVRLLSGIKSKVNLIPLNPAPGIPFSRPPDARVDRFADVLARAHLTVSVRKS 364
Query: 441 RGDDQMAACGQL 452
RG D AACGQL
Sbjct: 365 RGRDIRAACGQL 376
>gi|339483565|ref|YP_004695351.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
Is79A3]
gi|338805710|gb|AEJ01952.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
Is79A3]
Length = 366
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/307 (45%), Positives = 183/307 (59%), Gaps = 11/307 (3%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGR 214
+ + L K ++ L++ A + ++DGTRK L + G IETV IP NRG
Sbjct: 43 NAMSDLAKSLREKLADQAVIELPQIISDYVATDGTRKWLLAVGAGNGIETVYIPEANRG- 101
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG--------SI 266
T+CVSSQVGCA+ C FC TG+ G R+LT AEIV Q A + L S+V ++
Sbjct: 102 -TLCVSSQVGCALACTFCSTGKQGFNRNLTVAEIVGQLWIANKTLRSDVSDTSIQANRAV 160
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
TNVV MGMGEPL N ENV+ A ++M+ + S R+VTVSTSGLVP + + AL
Sbjct: 161 TNVVMMGMGEPLANFENVVTALDLMLDDHAYGLSRRRVTVSTSGLVPAIDRLRERCPVAL 220
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
A+SL+A D +R+ ++PIN+KY + L+ + L + FEYVMLAGVNDS A
Sbjct: 221 AISLHAPNDALRDQLVPINKKYPIKELLAACQRYLLAAPRDFITFEYVMLAGVNDSIAHA 280
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+ LI LVQ PCK NLI FN GS F +T E + FR++L AG +R +RGDD
Sbjct: 281 RELIALVQDTPCKFNLIPFNSFPGSGFKRSTAETVRVFRDVLMQAGLVTTVRKTRGDDIA 340
Query: 447 AACGQLG 453
AACGQL
Sbjct: 341 AACGQLA 347
>gi|188580846|ref|YP_001924291.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001]
gi|205829790|sp|B1ZG98.1|RLMN_METPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|179344344|gb|ACB79756.1| radical SAM enzyme, Cfr family [Methylobacterium populi BJ001]
Length = 425
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/332 (43%), Positives = 194/332 (58%), Gaps = 23/332 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
+W LY A E+ + K K L+EH + S DGTRK L +
Sbjct: 67 IWHWLYVRG--AREFSEMTNVGKGLKAQLAEHFTLDRPEVVTEQVSRDGTRKWLLRMAPT 124
Query: 198 -----DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ G IE V IP + R T+CVSSQVGC + C FC+TG L R+L+ AEIV Q
Sbjct: 125 GAHDHNRGAEIECVYIPGD-DRGTLCVSSQVGCTLTCSFCHTGTQRLVRNLSTAEIVSQL 183
Query: 253 VFARRLLSS-----------EVGS-ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS 300
V AR L EVG +TN+VFMGMGEPL+N++ VI A +M ++GL S
Sbjct: 184 VVARDALGDFTGQMPGKDGGEVGRLVTNIVFMGMGEPLYNLDAVIDAIAVMSDQEGLALS 243
Query: 301 PRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
R++TVSTSG+VPQ+++ E+N LA+SL+A DE+R+ ++P+NRKY + L+E R
Sbjct: 244 RRRITVSTSGVVPQIERLGLEANAMLAISLHAVRDELRDELVPLNRKYPIAQLLEACRNY 303
Query: 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 420
N ++ FEYVML GVNDS DA+ L+ L++GIP KINLI FNP GS++ + E+
Sbjct: 304 PGLSNARRITFEYVMLKGVNDSDADARALVRLLKGIPAKINLIPFNPWPGSKYECSDWER 363
Query: 421 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F + AG +R RG D +AACGQL
Sbjct: 364 IERFSEFVFNAGYASPVRTPRGRDILAACGQL 395
>gi|397663988|ref|YP_006505526.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395127399|emb|CCD05591.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 207/351 (58%), Gaps = 19/351 (5%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+V L ++++L++ + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYSQLRELLIGWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 60
Query: 171 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 226
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 61 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 115
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFD 175
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 176 NVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELV 235
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 236 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 295
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 346
>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
gi|81370554|sp|Q5X516.1|RLMN_LEGPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
Length = 382
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 204/348 (58%), Gaps = 13/348 (3%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+V L ++++L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGICDFAQMTN----LGKVLRNKLS 60
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNC 229
+ A + S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA+NC
Sbjct: 61 QLACIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCALNC 118
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVI 285
FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +NV+
Sbjct: 119 SFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGTHDKKITNVVMMGMGEPLLNFDNVV 178
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A NIM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++PIN
Sbjct: 179 SAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPIN 238
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NLI F
Sbjct: 239 KKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNLIPF 298
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 299 NPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLA 346
>gi|56698170|ref|YP_168542.1| radical SAM protein [Ruegeria pomeroyi DSS-3]
gi|81348990|sp|Q5LN66.1|RLMN_SILPO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56679907|gb|AAV96573.1| radical SAM enzyme, Cfr family [Ruegeria pomeroyi DSS-3]
Length = 393
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 211/368 (57%), Gaps = 22/368 (5%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 155
++ +P+K R+ L G++ +++ + H QA M +W+ +Y W
Sbjct: 10 DVVTIPRKLPEGRINLVGLTRDRMREVLIDHGTPEKQAKMRVGQIWQWIYQ---WGVRDF 66
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
+ + L K ++ L+EH + L S DGTRK L + G +E V IP R
Sbjct: 67 EAMTNLAKAYRAQLAEHFTIEIPEVITRLVSEDGTRKYLVRIAGGHEVEVVYIP-EEDRG 125
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSEVGSI 266
T+C+SSQVGC + C FC+TG L R+LTAAEIV Q + AR L E +
Sbjct: 126 TLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLGEWPVPGAPKDETRLL 185
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
+N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C L
Sbjct: 186 SNIVLMGMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEIGCLL 245
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
A+S +ATTDEVR+ ++PIN+++ + L+ L N+ ++ FEYVML GVNDS DA
Sbjct: 246 AISFHATTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADA 305
Query: 387 KRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444
RL+ ++ IP KINLI FN G+ + +++ ++ F NI+ AG +R +RGDD
Sbjct: 306 HRLLDHIRRYKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYAAPIRKTRGDD 365
Query: 445 QMAACGQL 452
MAACGQL
Sbjct: 366 IMAACGQL 373
>gi|254477449|ref|ZP_05090835.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11]
gi|214031692|gb|EEB72527.1| radical SAM enzyme, Cfr family [Ruegeria sp. R11]
Length = 396
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 23/369 (6%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCT 155
++ LP+K G ++ L G++ +++ + + QA M +W+ +Y W
Sbjct: 10 DVMTLPRKLPEGGKINLVGLTREQMRDVLIENGTPEKQAKMRVGQIWQWIYQ---WGKRD 66
Query: 156 -DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGR 214
+E+ L K ++ L+E E + S+DGTRK L + G +E V IP + R
Sbjct: 67 FEEMTNLAKGYRAQLAETFEISVPEVVSKQVSTDGTRKYLVRIAGGHEVEVVYIPED-DR 125
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SEVGS 265
T+CVSSQVGC + C FC+TG L R+LT EI+ Q + AR L E
Sbjct: 126 GTLCVSSQVGCTLTCSFCHTGTQKLVRNLTPGEIIGQVMMARDDLEEWPTPGAPKDETRL 185
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 186 LSNIVLMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCL 245
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LA+S +ATT+EVR+ ++PIN+++ + L++ L + N+ ++ FEYVML GVNDS +D
Sbjct: 246 LAISFHATTNEVRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDSDED 305
Query: 386 AKRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
A RLI ++ IP KINLI FN GS + +++ ++ F NI+ AG +R +RGD
Sbjct: 306 AHRLIDHIKRYKIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGD 365
Query: 444 DQMAACGQL 452
D MAACGQL
Sbjct: 366 DIMAACGQL 374
>gi|74316609|ref|YP_314349.1| hypothetical protein Tbd_0591 [Thiobacillus denitrificans ATCC
25259]
gi|123773051|sp|Q3SL73.1|RLMN_THIDA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|74056104|gb|AAZ96544.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 372
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 190/346 (54%), Gaps = 21/346 (6%)
Query: 124 LQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLK 181
L W +P +A + W G +A TD + K ++ L A +A ++
Sbjct: 13 LTAWFGERGEKPFRARQVFHWIHQAGVTDFAQMTD----IAKSLREKLQNEAVVQAPAIN 68
Query: 182 DILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKR 241
S+DGTRK LF + G IETV IP + R T+CVSSQVGCA+ C FC TGR G R
Sbjct: 69 FAHLSADGTRKWLFDVGVGNGIETVFIPED-DRGTLCVSSQVGCALECTFCSTGRQGFNR 127
Query: 242 HLTAAEIVEQAVFARRLLSSE---------VGSI-----TNVVFMGMGEPLHNVENVIKA 287
+LT AEIV Q A+ L E G I TNVV MGMGEPL N ENV+ A
Sbjct: 128 NLTVAEIVGQLWVAQHSLKREPNRTASDHGAGEIAERPVTNVVMMGMGEPLANFENVVTA 187
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
+M+ + S R+VTVSTSGLVP + + ALAVSL+A D +R+ I+PINRK
Sbjct: 188 LGVMLDDHAYGLSRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAPNDALRDQIVPINRK 247
Query: 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
Y L L+ R L + FEYVMLAGVND + A++LI L + +PCK NLI FNP
Sbjct: 248 YPLAELMAACRRYLVHAPRDFITFEYVMLAGVNDQPEHARQLIALTRDVPCKFNLIPFNP 307
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
S + E M FR IL AG V R +RGDD AACGQL
Sbjct: 308 FPDSGYEKPRAEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQLA 353
>gi|374262913|ref|ZP_09621473.1| radical SAM protein [Legionella drancourtii LLAP12]
gi|363536729|gb|EHL30163.1| radical SAM protein [Legionella drancourtii LLAP12]
Length = 378
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/351 (42%), Positives = 208/351 (59%), Gaps = 17/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L ++ ++++ + S +P Q ++ W G +A T+ L K ++ L
Sbjct: 4 QKVNLLNYNYQQMRELLSSWGEQPYRAQQIIQWIHQSGLVDFAQMTN----LGKALREKL 59
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMN 228
S+ + + + SSDGT K L LD G IETV IP NRG T+CVSSQVGCA+N
Sbjct: 60 SQLSYIKVPEIVTCQKSSDGTHKWLLKLDCGNCIETVFIPEANRG--TLCVSSQVGCALN 117
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENV 284
C FC T + G R+L+ AEI+ Q A R LS+ G +TNVV MGMGEPL N +NV
Sbjct: 118 CSFCSTAKQGFNRNLSTAEIIGQVWLAVRELSTNQGVHDKRLTNVVMMGMGEPLLNFDNV 177
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A NIM+ + S R+VT+STSG++P L++ S ALAVSL+A DE+RN ++PI
Sbjct: 178 VSAMNIMMDDFAYGLSKRRVTLSTSGVLPDLERLRQVSPVALAVSLHAPNDELRNELVPI 237
Query: 345 NRKYKLGLLIETLREELHFKNN--YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N+KY L L+ + ++FK+ KV FEYVML GVND + A +LI L++ +P K+NL
Sbjct: 238 NKKYPLAQLMALCK--IYFKDEPRRKVTFEYVMLKGVNDQPEHATQLIKLLRDVPAKVNL 295
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FNP +Q+ ++ + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPMTQYQRSSQAAIDAFRDKLIANGINTITRKTRGDDIDAACGQLA 346
>gi|144899244|emb|CAM76108.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 380
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/353 (42%), Positives = 206/353 (58%), Gaps = 27/353 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S +L + S +P +A LW LY TD ++ ++K ++ L+E
Sbjct: 10 LIGLSRDQLTAEMASIGEKPFRAKQLWHWLYN----RGETDFLKMTSISKVMQERLAERY 65
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPC-NRGRTTVCVSSQVGCAMNCQFC 232
R ++ LTS D TRK L DDG ETV IP + R VC+SSQVGC + C+FC
Sbjct: 66 VVRRPLVERELTSVDTTRKWLLKFDDGNEAETVYIPDEDEQRGAVCISSQVGCTLTCKFC 125
Query: 233 YTGRMGLKRHLTAAEIVEQAVFAR-------------RLLSSEVGSITNVVFMGMGEPLH 279
+TG L R+LTAAEIV Q + AR RLLS N+V MGMGEPL+
Sbjct: 126 HTGTQLLVRNLTAAEIVGQFMLARDSYGEWPTPDDTTRLLS-------NIVMMGMGEPLY 178
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N +NV A I++ +G+ S R++T+STSG+VP + + E LA+SL+A TDEVRN
Sbjct: 179 NFDNVATALKIIMDGEGIGISRRRITLSTSGVVPMMGRAGAELGVNLAISLHAVTDEVRN 238
Query: 340 WIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
IMPIN+KY L L++ R+ N ++ FEYVML G+NDS DA+ L+ LV+G+P K
Sbjct: 239 QIMPINKKYPLKELMQACRDYPGASNARRITFEYVMLKGINDSLADARELLRLVKGLPAK 298
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS + ++ + F +++ G + +R SRG D +AACGQL
Sbjct: 299 FNLIPFNPWPGSDYECSSMRDIRAFSDLIQDNGYSAPIRKSRGADILAACGQL 351
>gi|121601967|ref|YP_989610.1| radical SAM protein [Bartonella bacilliformis KC583]
gi|421761409|ref|ZP_16198211.1| radical SAM protein [Bartonella bacilliformis INS]
gi|205829667|sp|A1UUF7.1|RLMN_BARBK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120614144|gb|ABM44745.1| radical SAM enzyme, Cfr family [Bartonella bacilliformis KC583]
gi|411172874|gb|EKS42924.1| radical SAM protein [Bartonella bacilliformis INS]
Length = 414
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 211/378 (55%), Gaps = 30/378 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G+S E+ Q +RS Q M LW Y + + DE+ ++K ++ML +
Sbjct: 32 LIGLSHDEMVQALRSIGVPEHQTRMRVRQLWHWFYVRGVSSF--DEMFNISKPMREMLKD 89
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
+ + + S DGT K L + IETV IP GR T+CVSSQVGC
Sbjct: 90 NFSIAYPEIVEEQISKDGTYKWLLRFPARGAGKPVEIETVYIP-GEGRGTLCVSSQVGCT 148
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFAR-RL-------------LSSEVGSITNVVFM 272
+ C FCYTG L R+LTA EI+ Q +FAR RL LS E ITN+V M
Sbjct: 149 LTCSFCYTGTQKLVRNLTAEEILLQLLFARNRLGDFPGKDKPDHSSLSEERRKITNIVMM 208
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + E LAVSL+A
Sbjct: 209 GMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGEEIGVMLAVSLHA 268
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
D +R+ ++PIN+KY L +L+E R N ++ FEYVML VNDS DDAK+LI L
Sbjct: 269 VCDSLRDVLVPINKKYPLSMLMEACRNYPGLSNAKRITFEYVMLKDVNDSLDDAKKLIKL 328
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++GIP KINLI FNP GS + + E++ F +++ AG +R+ RG D +AACG L
Sbjct: 329 LKGIPAKINLIPFNPWPGSHYECSDWEQIERFADVINRAGYASPIRMPRGRDILAACGNL 388
Query: 453 GNPGAIQAPLLRVPEKFQ 470
+ + LR E+ Q
Sbjct: 389 KS----TSERLRKSERLQ 402
>gi|149194715|ref|ZP_01871810.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
gi|149135138|gb|EDM23619.1| hypothetical protein CMTB2_05022 [Caminibacter mediatlanticus TB-2]
Length = 355
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 193/332 (58%), Gaps = 19/332 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q R Y DD +++ L KD ++ L + L L + +SDGT K
Sbjct: 21 FRVKQLYNWVYRKYVDDF-----EKMSNLPKDLREKLKKEFYINPLELINHEIASDGTEK 75
Query: 193 ILFMLDDGLVIETVVIPCNRGRT----------TVCVSSQVGCAMNCQFCYTGRMGLKRH 242
LF L+D IETV+I R TVCVS+QVGC + C FC T + G R+
Sbjct: 76 FLFKLNDNHTIETVLIKMKDDRVENGKKKEAKYTVCVSTQVGCKVGCAFCLTAKGGFVRN 135
Query: 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
L+A EIV Q F ++ + + NVVFMGMGEPL N N++KA I+ H GL+ +PR
Sbjct: 136 LSAGEIVAQVWFMKKFKNFDENKALNVVFMGMGEPLDNYNNLVKAIKIIAHTDGLNIAPR 195
Query: 303 KVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
+ TVSTSG+ P++K+ L E N LA+SL+A D++R ++P+N+ Y + +IE +R E
Sbjct: 196 RQTVSTSGIAPKIKK-LGEENLGVNLAISLHAVDDKLREQLIPLNKAYNIQSVIEAIR-E 253
Query: 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 420
KV+FEY+++ VND+ D AK+L+ L+ GIP K+NLI FNP+ GS F +E
Sbjct: 254 FPIDKRKKVMFEYLVIKDVNDNLDSAKKLVKLLNGIPSKVNLIYFNPYPGSPFKRPDEET 313
Query: 421 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
M +F+ L G T +R S+G D AACGQL
Sbjct: 314 MKKFQRYLLDRGITCTIRQSKGIDISAACGQL 345
>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
str. Corby]
gi|296107129|ref|YP_003618829.1| radical SAM protein [Legionella pneumophila 2300/99 Alcoy]
gi|205829782|sp|A5IC42.1|RLMN_LEGPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
Alcoy]
Length = 382
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/351 (42%), Positives = 208/351 (59%), Gaps = 19/351 (5%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+V L ++++L++ + + +P Q L W G +A T+ L K + LS
Sbjct: 5 KVNLLNYNYSQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTN----LGKVLRNKLS 60
Query: 171 EHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCA 226
+ A + L +I+ S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA
Sbjct: 61 QLA---CIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCA 115
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+NC FC T + G R+L+ AEI+ Q A R LS G+ ITNVV MGMGEPL N +
Sbjct: 116 LNCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDNNGAHDKKITNVVMMGMGEPLLNFD 175
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A +IM+ + S R+VT+STSG++P++++ S ALAVSL+A TDE+RN ++
Sbjct: 176 NVVSAMSIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELV 235
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L LI + + KV FEYVML GVND + A +LI L+ +P K+NL
Sbjct: 236 PINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHNVPAKVNL 295
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FNP +Q+ ++ E + FR+ L G R +RGDD AACGQL
Sbjct: 296 IPFNPFPLTQYQRSSRETIDAFRDKLIKHGINTITRKTRGDDIDAACGQLA 346
>gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
Length = 367
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/342 (41%), Positives = 195/342 (57%), Gaps = 16/342 (4%)
Query: 123 ELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSL 180
+L QW +P +A LM W +G H +++ + K+ ++ L+ AE ++
Sbjct: 11 QLAQWFADRGEKPFRAKQLMRWMHHFG----VHDFEQMTDIAKNLREKLAVDAEITLPTV 66
Query: 181 KDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
+ S+DGTRK L D IETV IP + R T+CVSSQVGCA+ C FC TGR G
Sbjct: 67 QLAQVSNDGTRKWLIGTDTANSIETVFIPED-DRGTLCVSSQVGCALECTFCSTGRQGFN 125
Query: 241 RHLTAAEIVEQAVFARRLLSSEVGS---------ITNVVFMGMGEPLHNVENVIKAANIM 291
R+L+ AEI+ Q A + L E G I+NVV MGMGEPL N +NV+ A IM
Sbjct: 126 RNLSVAEIIGQVAIANQTLRQEPGYDMLPANDRIISNVVMMGMGEPLANYDNVVTAMQIM 185
Query: 292 VHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 351
+ + S R+VT+STSG+VP + + + ALAVSL+A D +R+ I+PIN+KY L
Sbjct: 186 LDDSAYGLSRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAPNDALRDVIVPINKKYPLK 245
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
L+ L V FEYVML GVND+ + A +L+ LV+ + CK NLI FNP S
Sbjct: 246 ELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLELVKNVSCKFNLIPFNPFPNS 305
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ + + FR+IL AG V +R +RGDD AACGQL
Sbjct: 306 GYDTSKPNHVRVFRDILMQAGYVVTVRKTRGDDIDAACGQLA 347
>gi|94268941|ref|ZP_01291330.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
gi|93451405|gb|EAT02257.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
Length = 345
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/343 (41%), Positives = 197/343 (57%), Gaps = 11/343 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDI--WAHCTDELEGLNKDFKKMLSEHA 173
LK ++ EL WV + +P +A ++ LY D +A TD + K + +L+E A
Sbjct: 8 LKNLTLPELTAWVETLNLKPFRARQIFSWLYRPDFSDFAQMTD----IAKHVRALLAEKA 63
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
F L+ S+DGT K F L DG +IE+V+IP R T+CVSSQVGCAM C FC
Sbjct: 64 TFSRLAAAKEEHSTDGTVKFAFRLSDGHLIESVLIP-EEDRHTLCVSSQVGCAMGCNFCL 122
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLL---SSEVGSITNVVFMGMGEPLHNVENVIKAANI 290
TG MG R+LT AE+V Q A L + G + N+VFMGMGEPL N +N+IKA NI
Sbjct: 123 TGTMGFIRNLTVAEMVGQVDQAAHWLWQRGARSGRLNNLVFMGMGEPLLNFDNLIKAINI 182
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350
++ ++G S R++TVST G+VP++K+ + LAVSL+A R +MP+NR Y L
Sbjct: 183 LMEQRGHDLSGRRITVSTCGIVPRMKELGEKVPVNLAVSLHAADHATREQLMPVNRTYPL 242
Query: 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
L++ R + +++ EY +LAG+NDS A+ L+ + GI CKIN++ FN
Sbjct: 243 AELLQACR-QYPLPPRRRIMIEYALLAGINDSPAAARLLVKQLHGIRCKINILPFNETPA 301
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ + FR IL AG T LR SRG D AACGQL
Sbjct: 302 FPYRCPDPATIEAFRQILRRAGHTTLLRTSRGADIAAACGQLA 344
>gi|372282324|ref|ZP_09518360.1| hypothetical protein OS124_21919 [Oceanicola sp. S124]
Length = 394
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 220/372 (59%), Gaps = 30/372 (8%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HC 154
++ +P+K G+R L+ G++ +L++ + QA M LW+ LY W
Sbjct: 11 DVLTIPRKLPEGARNLV-GLTRPQLREALIEIGTPEKQAKMRVNQLWQWLYH---WGVRD 66
Query: 155 TDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCN 211
E+ L KDF+ L+E+ + L +I++ S DGTRK L + G +E V IP
Sbjct: 67 FAEMTNLAKDFRARLAENF---VIELPEIVSKNVSEDGTRKYLVKIAGGHEVEVVYIP-E 122
Query: 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------SSE 262
R T+CVSSQVGC + C FC+TG L R+LT EIV Q + R L + E
Sbjct: 123 TDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTPGEIVGQIMLVRDDLDEWPAPGTGTGE 182
Query: 263 VGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 320
G ++N+V MGMGEPL+N E+V A I + +G+ S R++T+STSG+VP++ +
Sbjct: 183 NGPRLLSNIVLMGMGEPLYNFEHVRDAMKIAMDGEGIALSRRRITLSTSGVVPEIARAAE 242
Query: 321 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 380
E C LAVS +ATTDEVR+ ++PIN+++ + L+E LR+ N+ ++ FEYVML VN
Sbjct: 243 EIGCMLAVSFHATTDEVRDKLVPINKRWNIETLLEALRDYPRLSNSERITFEYVMLKDVN 302
Query: 381 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 440
DS +DA+RL+ L++GIP KINLI FN GS + + ++ F +I+ AG +R
Sbjct: 303 DSDEDARRLVRLIKGIPAKINLIPFNEWPGSPYQRSDWTRIRAFADIVHKAGYASPIRTP 362
Query: 441 RGDDQMAACGQL 452
RG+D MAACGQL
Sbjct: 363 RGEDIMAACGQL 374
>gi|345877760|ref|ZP_08829498.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225211|gb|EGV51576.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 379
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 189/317 (59%), Gaps = 11/317 (3%)
Query: 143 KRLYGDDI--WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
K +G ++ W H +++ ++K + L AE R L + DGTRK +
Sbjct: 41 KAFHGRNVFKWIHKQGVIDFNQMTDISKRLRVQLESLAEIRLPELVFEQPARDGTRKWVL 100
Query: 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
LDDG IETV IP + R+T+CVSSQVGCA+NC FC T R G R+L+ AEI+ Q A
Sbjct: 101 QLDDGQRIETVYIP-DGERSTICVSSQVGCALNCSFCSTARQGFNRNLSVAEIIGQVWVA 159
Query: 256 RRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 315
R L TN+V MGMGEPL N + V+ A +IM + S +VT+STSG+VP L
Sbjct: 160 SRELGH---PPTNIVLMGMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPAL 216
Query: 316 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375
+Q S+ +LAVSL+A T+E+R+ ++PIN+KY L LI R+ + K+ +EYVM
Sbjct: 217 RQLREVSDVSLAVSLHAPTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVM 276
Query: 376 LAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTV 435
L G+NDS AK LI L++G P K+NLI FNP G+ + + E++ FR L AG
Sbjct: 277 LDGINDSIQHAKALIRLLEGTPSKLNLIPFNPFPGTSYKTSPPERVEVFRQRLMKAGIIS 336
Query: 436 FLRLSRGDDQMAACGQL 452
R +RG+D AACGQL
Sbjct: 337 ITRKTRGEDIDAACGQL 353
>gi|261377750|ref|ZP_05982323.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
gi|269146035|gb|EEZ72453.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
Length = 366
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 151/341 (44%), Positives = 199/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G + TD L K + L+E A L SSDGTRK
Sbjct: 25 FRAKQ-VMRWIHQSGAQNFGEMTD----LAKSLRYKLNEQASIDIPKLMMSQESSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP + R T+C+SSQVGCA+ C FC TGR G R+L+AAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIPESE-RGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEP+ N ENV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ DEVRN I+P+N+KY L L+ + L +
Sbjct: 199 GMVPQMDKLRDTMPVALAVSLHASNDEVRNKIVPLNKKYPLKELMAACQRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND A LI LV+ +PCK NLI FNP S + + +E + F +IL
Sbjct: 259 TFEYVMLDGVNDKAQHAYELIELVKDVPCKFNLIPFNPFPNSGYERSNNENIRIFIDILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 QAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|15599001|ref|NP_252495.1| hypothetical protein PA3806 [Pseudomonas aeruginosa PAO1]
gi|107103326|ref|ZP_01367244.1| hypothetical protein PaerPA_01004395 [Pseudomonas aeruginosa PACS2]
gi|116051831|ref|YP_789326.1| hypothetical protein PA14_14830 [Pseudomonas aeruginosa UCBPP-PA14]
gi|296387679|ref|ZP_06877154.1| hypothetical protein PaerPAb_05972 [Pseudomonas aeruginosa PAb1]
gi|313109224|ref|ZP_07795192.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
gi|355639717|ref|ZP_09051327.1| cfr family radical SAM enzyme [Pseudomonas sp. 2_1_26]
gi|386057199|ref|YP_005973721.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa M18]
gi|386067897|ref|YP_005983201.1| hypothetical protein NCGM2_4993 [Pseudomonas aeruginosa NCGM2.S1]
gi|392982467|ref|YP_006481054.1| hypothetical protein PADK2_05295 [Pseudomonas aeruginosa DK2]
gi|416856966|ref|ZP_11912445.1| hypothetical protein PA13_11338 [Pseudomonas aeruginosa 138244]
gi|416879311|ref|ZP_11920764.1| hypothetical protein PA15_21843 [Pseudomonas aeruginosa 152504]
gi|418585955|ref|ZP_13150001.1| hypothetical protein O1O_14788 [Pseudomonas aeruginosa MPAO1/P1]
gi|418589832|ref|ZP_13153751.1| hypothetical protein O1Q_04533 [Pseudomonas aeruginosa MPAO1/P2]
gi|419757096|ref|ZP_14283441.1| hypothetical protein CF510_29295 [Pseudomonas aeruginosa
PADK2_CF510]
gi|421152382|ref|ZP_15611962.1| hypothetical protein PABE171_1306 [Pseudomonas aeruginosa ATCC
14886]
gi|421165943|ref|ZP_15624221.1| hypothetical protein PABE177_1048 [Pseudomonas aeruginosa ATCC
700888]
gi|421172942|ref|ZP_15630697.1| hypothetical protein PACI27_1181 [Pseudomonas aeruginosa CI27]
gi|421179024|ref|ZP_15636621.1| hypothetical protein PAE2_1070 [Pseudomonas aeruginosa E2]
gi|421518351|ref|ZP_15965025.1| hypothetical protein A161_18770 [Pseudomonas aeruginosa PAO579]
gi|424939327|ref|ZP_18355090.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
NCMG1179]
gi|451985678|ref|ZP_21933891.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
aeruginosa 18A]
gi|3287987|sp|Q51385.2|RLMN_PSEAE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|122260978|sp|Q02RW0.1|RLMN_PSEAB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|9949979|gb|AAG07193.1|AE004798_16 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|1162959|gb|AAB40948.1| homologous to HI0365 in Haemophilus influenzae; ORF1 [Pseudomonas
aeruginosa PAO1]
gi|115587052|gb|ABJ13067.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
UCBPP-PA14]
gi|310881694|gb|EFQ40288.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
gi|334837516|gb|EGM16274.1| hypothetical protein PA15_21843 [Pseudomonas aeruginosa 152504]
gi|334841217|gb|EGM19852.1| hypothetical protein PA13_11338 [Pseudomonas aeruginosa 138244]
gi|346055773|dbj|GAA15656.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
NCMG1179]
gi|347303505|gb|AEO73619.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa M18]
gi|348036456|dbj|BAK91816.1| hypothetical protein NCGM2_4993 [Pseudomonas aeruginosa NCGM2.S1]
gi|354831765|gb|EHF15772.1| cfr family radical SAM enzyme [Pseudomonas sp. 2_1_26]
gi|375043629|gb|EHS36245.1| hypothetical protein O1O_14788 [Pseudomonas aeruginosa MPAO1/P1]
gi|375051368|gb|EHS43837.1| hypothetical protein O1Q_04533 [Pseudomonas aeruginosa MPAO1/P2]
gi|384396851|gb|EIE43269.1| hypothetical protein CF510_29295 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392317972|gb|AFM63352.1| hypothetical protein PADK2_05295 [Pseudomonas aeruginosa DK2]
gi|404347833|gb|EJZ74182.1| hypothetical protein A161_18770 [Pseudomonas aeruginosa PAO579]
gi|404525142|gb|EKA35418.1| hypothetical protein PABE171_1306 [Pseudomonas aeruginosa ATCC
14886]
gi|404536613|gb|EKA46249.1| hypothetical protein PACI27_1181 [Pseudomonas aeruginosa CI27]
gi|404539446|gb|EKA48927.1| hypothetical protein PABE177_1048 [Pseudomonas aeruginosa ATCC
700888]
gi|404547542|gb|EKA56536.1| hypothetical protein PAE2_1070 [Pseudomonas aeruginosa E2]
gi|451756727|emb|CCQ86414.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
aeruginosa 18A]
gi|453043514|gb|EME91244.1| hypothetical protein H123_25326 [Pseudomonas aeruginosa PA21_ST175]
Length = 379
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+Q+ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 8 KVNLLGLTQPQLEQFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKL 62
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 63 KASAEIRGPEIVSQDISADGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 121
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 122 SFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 181
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A NIM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 182 AAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPIN 241
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY LG+L++ R + +VL EY +L VND + A+++I L++ PCKINLI
Sbjct: 242 KKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKDTPCKINLIP 301
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V +R +RGDD AACGQL
Sbjct: 302 FNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 349
>gi|350571836|ref|ZP_08940152.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
gi|349791021|gb|EGZ44914.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
Length = 362
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/341 (43%), Positives = 199/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L + AE +L S DGTRK
Sbjct: 25 FRAKQ-VMRWMHQAG----ASDFDEMTDLAKSLRAKLQDKAEVGVPALMAAQESRDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+L+AAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEPL N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPLANFDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + ALAVSL+A+ D VR+ I+P+N+KY L L+ + L V
Sbjct: 199 GMVPQMDRLKEAMPVALAVSLHASNDAVRDEIVPLNKKYPLKELMAACQRYLVKAPRDFV 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND AK LI LV+ +PCK NLI FNP S + ++++ + F+ IL
Sbjct: 259 TFEYVMLDGINDKPQHAKELIELVKDVPCKFNLIPFNPFPNSGYDRSSNDAIRVFKEILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG V +R +RGDD AACGQL G +Q R +K+Q
Sbjct: 319 EAGFVVTVRKTRGDDIDAACGQLA--GQVQDKTRR-QQKWQ 356
>gi|99082854|ref|YP_615008.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
gi|122984035|sp|Q1GC70.1|RLMN_SILST RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|99039134|gb|ABF65746.1| hypothetical protein TM1040_3014 [Ruegeria sp. TM1040]
Length = 397
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/369 (38%), Positives = 215/369 (58%), Gaps = 23/369 (6%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HC 154
++ LP+K G ++ L G++ ++ + + QA M +W+ +Y W
Sbjct: 10 DVLTLPRKEPEGGKINLVGLTRDRMRAVLIENGTPEKQAKMRVGQIWQWIYQ---WGVRD 66
Query: 155 TDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGR 214
E+ L K ++ L E E R + S+DGTRK L ++ G +E V IP + R
Sbjct: 67 FAEMTNLAKAYRAQLEETFEIRIPEVVSKQVSTDGTRKYLVRINGGHEVEVVYIPED-DR 125
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------SEVGS 265
T+C+SSQVGC + C FC+TG L R+LT AEI+ Q + AR L E
Sbjct: 126 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTPAEIIGQVMMARDDLEEWPTPGAPKDETRL 185
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 186 LSNIVLMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCL 245
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LA+S +ATT+EVR+ ++PINR++ + L++ L + N+ ++ FEYVML GVNDS +D
Sbjct: 246 LAISFHATTNEVRDVLVPINRRWNIDELLQALADYPKVSNSERITFEYVMLDGVNDSDED 305
Query: 386 AKRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
A RL+ ++ IP KINLI FN G+ + +++ ++ F NI+ AG +R +RGD
Sbjct: 306 AHRLLDHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGD 365
Query: 444 DQMAACGQL 452
D MAACGQL
Sbjct: 366 DIMAACGQL 374
>gi|345863302|ref|ZP_08815514.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345125763|gb|EGW55631.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 365
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 189/317 (59%), Gaps = 11/317 (3%)
Query: 143 KRLYGDDI--WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
K +G ++ W H +++ ++K + L AE R L + DGTRK +
Sbjct: 27 KAFHGRNVFKWIHKQGVIDFNQMTDISKRLRVQLESLAEIRLPELVFEQPARDGTRKWVL 86
Query: 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
LDDG IETV IP + R+T+CVSSQVGCA+NC FC T R G R+L+ AEI+ Q A
Sbjct: 87 QLDDGQRIETVYIP-DGERSTICVSSQVGCALNCSFCSTARQGFNRNLSVAEIIGQVWVA 145
Query: 256 RRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 315
R L TN+V MGMGEPL N + V+ A +IM + S +VT+STSG+VP L
Sbjct: 146 SRELGH---PPTNIVLMGMGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPAL 202
Query: 316 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375
+Q S+ +LAVSL+A T+E+R+ ++PIN+KY L LI R+ + K+ +EYVM
Sbjct: 203 RQLREVSDVSLAVSLHAPTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVM 262
Query: 376 LAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTV 435
L G+NDS AK LI L++G P K+NLI FNP G+ + + E++ FR L AG
Sbjct: 263 LDGINDSIQHAKALIRLLEGTPSKLNLIPFNPFPGTSYKTSPPERVEVFRQRLMKAGIIS 322
Query: 436 FLRLSRGDDQMAACGQL 452
R +RG+D AACGQL
Sbjct: 323 ITRKTRGEDIDAACGQL 339
>gi|163851067|ref|YP_001639110.1| radical SAM protein [Methylobacterium extorquens PA1]
gi|205829789|sp|A9W383.1|RLMN_METEP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|163662672|gb|ABY30039.1| radical SAM enzyme, Cfr family [Methylobacterium extorquens PA1]
Length = 425
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 188/316 (59%), Gaps = 21/316 (6%)
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--------DDGLVIETVVI 208
E+ + K K L++H + S DGTRK L + + G IE V I
Sbjct: 81 EMTNVGKGLKAQLADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYI 140
Query: 209 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--- 265
P + R T+CVSSQVGC + C FC+TG L R+L+ AEIV Q V AR L G
Sbjct: 141 PGD-DRGTLCVSSQVGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPG 199
Query: 266 ---------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
+TN+VFMGMGEPL+N++ VI A +M ++GL S R++TVSTSG+VPQ++
Sbjct: 200 KDGGEPGRLVTNIVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQME 259
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E+N LA+SL+A DE+R+ ++P+NRKY + L++ R N ++ FEYVML
Sbjct: 260 RLGLEANAMLAISLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVML 319
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
GVNDS DA+ L+ L++GIP KINLI FNP GS++ + E++ F I+ AG
Sbjct: 320 KGVNDSDADARALVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASP 379
Query: 437 LRLSRGDDQMAACGQL 452
+R RG D +AACGQL
Sbjct: 380 VRTPRGRDILAACGQL 395
>gi|333892268|ref|YP_004466143.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
SN2]
gi|332992286|gb|AEF02341.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
SN2]
Length = 372
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 195/326 (59%), Gaps = 12/326 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G+ + +++ LNK+ + ML EH E +A + +SDGT K
Sbjct: 26 FRADQ-VMKWIYQQGESDF----EKMSNLNKNLRAMLIEHCEVKAPEIAYFQEASDGTIK 80
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ- 251
L+ G +ETV IP R T+CVSSQVGCA+ C FC T + G R+L+ +EI+ Q
Sbjct: 81 FALALEGGQEVETVWIP-EADRATLCVSSQVGCALECTFCSTAQQGFNRNLSVSEIIGQV 139
Query: 252 ---AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A F + ITNVV MGMGEPL N++NV+ A NIM+ + G S R+VT+ST
Sbjct: 140 WRVATFLGLSKDTSKRPITNVVMMGMGEPLLNLKNVVPAMNIMLDDFGFGLSKRRVTLST 199
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L ++ + ALA+SL+A DE+RN I+P+N+KY + + +R L N
Sbjct: 200 SGVVPALDMLGDQIDVALAISLHAPNDELRNEIVPVNKKYNIEAFLAGVRRYLEKSKANQ 259
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML+ +NDS D A L +++ PCKINLI FNP+ GS + +++ ++ F
Sbjct: 260 GRVTVEYVMLSHINDSTDQAHELAKVLKDTPCKINLIPFNPYPGSPYLCSSNSRIDRFSK 319
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQL 452
+L G T +R +RGDD AACGQL
Sbjct: 320 VLMDYGFTTVVRKTRGDDIDAACGQL 345
>gi|218889910|ref|YP_002438774.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
gi|218770133|emb|CAW25895.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
Length = 379
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+Q+ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 8 KVNLLGLTQPQLEQFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKL 62
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 63 KASAEIRGPEIVSQDISADGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 121
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 122 SFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 181
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A NIM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 182 AAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPIN 241
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY LG+L++ R + +VL EY +L VND + A+++I L++ PCKINLI
Sbjct: 242 KKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKDTPCKINLIP 301
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V +R +RGDD AACGQL
Sbjct: 302 FNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 349
>gi|218529897|ref|YP_002420713.1| radical SAM enzyme, Cfr family [Methylobacterium extorquens CM4]
gi|218522200|gb|ACK82785.1| radical SAM enzyme, Cfr family [Methylobacterium extorquens CM4]
Length = 425
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 188/316 (59%), Gaps = 21/316 (6%)
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--------DDGLVIETVVI 208
E+ + K K L++H + S DGTRK L + + G IE V I
Sbjct: 81 EMTNVGKGLKAQLADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYI 140
Query: 209 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--- 265
P + R T+CVSSQVGC + C FC+TG L R+L+ AEIV Q V AR L G
Sbjct: 141 PGD-DRGTLCVSSQVGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPG 199
Query: 266 ---------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
+TN+VFMGMGEPL+N++ VI A +M ++GL S R++TVSTSG+VPQ++
Sbjct: 200 KDGGEPGRLVTNIVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIE 259
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E+N LA+SL+A DE+R+ ++P+NRKY + L++ R N ++ FEYVML
Sbjct: 260 RLGLEANAMLAISLHAVRDELRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVML 319
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
GVNDS DA+ L+ L++GIP KINLI FNP GS++ + E++ F I+ AG
Sbjct: 320 KGVNDSDADARALVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASP 379
Query: 437 LRLSRGDDQMAACGQL 452
+R RG D +AACGQL
Sbjct: 380 VRTPRGRDILAACGQL 395
>gi|90417489|ref|ZP_01225412.1| hypothetical protein GB2207_07422 [gamma proteobacterium HTCC2207]
gi|90330730|gb|EAS46009.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
HTCC2207]
Length = 392
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 208/356 (58%), Gaps = 18/356 (5%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYG-DDIWAHCTDELEGLNK 163
P+K LL G+S + + ++ S FR G ++ W YG DD+ +E+ ++K
Sbjct: 15 PRKVKTNLL-GLSASRIGDFLESLGEKRFR-GTQILKWIHQYGIDDL-----NEMTNISK 67
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
++ L++ AE + S DGTRK L +D G IE V IP R R T+CVSSQ+
Sbjct: 68 SLRESLADVAEVVMPEVVSCQDSVDGTRKWLIKVDGGSCIEMVYIP-ERDRGTLCVSSQI 126
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLH 279
GCA++C FC TG+ G R LT AEI+ Q A + + +TNVV MGMGEPL
Sbjct: 127 GCALDCSFCATGKQGFARDLTTAEIIGQLWIAAKSFDQFDTKNPRRVTNVVMMGMGEPLM 186
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N NV+ A ++M+ + S R+VT+ST+G+VP+L + + S+ +LA+SL+A DE+RN
Sbjct: 187 NFNNVVDAMSLMMDDNAYGLSKRRVTLSTAGVVPELDKLGDVSDVSLAISLHAPNDELRN 246
Query: 340 WIMPINRKYKLGLLIETLREELHF--KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
++PINRKY L I + + L N KV EY ++ VND + AK L L++ +P
Sbjct: 247 QLVPINRKYPLVDFIGSAKRYLDKMPDNRRKVTVEYTLMDRVNDRDEHAKELSVLLRDLP 306
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI FNP GS++ T + FR+IL G TV +R +RGDD AACGQL
Sbjct: 307 CKINLIPFNPFPGSEYKKVTKVALNRFRDILQNDGYTVTVRTTRGDDIAAACGQLA 362
>gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
Length = 381
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 207/350 (59%), Gaps = 17/350 (4%)
Query: 113 RVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGD-DIWAHCTDELEGLNKDFKKM 168
+V L GMS T+L+ + + FR Q LM W G+ D A + L K ++
Sbjct: 13 KVNLFGMSRTQLEAFFLEMGEKRFR-AQQLMKWMHHQGECDFSA-----MSNLGKALRER 66
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
LS AE R ++ SSDGTRK L +D G ++ETV+IP + R T+CVSSQVGC+++
Sbjct: 67 LSAIAEVRPPVVESQHDSSDGTRKWLVHVDGGGLVETVLIP-DGNRATLCVSSQVGCSLD 125
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARR----LLSSEVGSITNVVFMGMGEPLHNVENV 284
C FC TG+ G +R L+AAEI+ Q A + S +TNVV MGMGEPL N +NV
Sbjct: 126 CSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSGNGRVVTNVVMMGMGEPLLNFDNV 185
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A N+M+ + G S R+VT+STSG+VP L + S +LAVSL+A DE+RN ++P+
Sbjct: 186 VTAMNLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLHAPNDELRNQLVPV 245
Query: 345 NRKYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NR+Y + L+ + + + + + K V EY ++AG+ND + A+ L L+ PCKINL
Sbjct: 246 NRRYPIAQLLASAQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARELALLLADFPCKINL 305
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP S + + + F +L AG V +R +RGDD AACGQL
Sbjct: 306 IPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAACGQL 355
>gi|146308518|ref|YP_001188983.1| radical SAM protein [Pseudomonas mendocina ymp]
gi|421505105|ref|ZP_15952045.1| radical SAM protein [Pseudomonas mendocina DLHK]
gi|205829652|sp|A4XY35.1|RLMN_PSEMY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145576719|gb|ABP86251.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas mendocina ymp]
gi|400344328|gb|EJO92698.1| radical SAM protein [Pseudomonas mendocina DLHK]
Length = 382
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 207/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G D +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFESIGEKRFRAGQ-VMKWIHHFGVDDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP N GR T+CVSSQ GCA++C
Sbjct: 62 EASAEIRGPEVVSENISADGTRKWVVRVASGSCVETVYIPQN-GRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LT+AEI+ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 SAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRNQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L GVND + A+++I L+ +PCKINLI
Sbjct: 241 KKYPLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLADVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L AG V +R +RGDD AACGQL
Sbjct: 301 FNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDAACGQL 348
>gi|301057688|ref|ZP_07198761.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
gi|300448149|gb|EFK11841.1| 23S rRNA m2A2503 methyltransferase [delta proteobacterium NaphS2]
Length = 346
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 145/350 (41%), Positives = 201/350 (57%), Gaps = 12/350 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSH---AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
S + LKG+S E+++W + A+R G+ + W +A DE++ L K + +
Sbjct: 2 SLIDLKGLSAAEMEKWAVDNGMEAYR-GRQIRHWILTR----FAKSFDEMDNLPKKLRSL 56
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L E A +L + S DGTRK L+ L DG IETV+IP R T+CVSSQVGCAM
Sbjct: 57 LKEKAHLSSLRELKAIQSEDGTRKYLYQLQDGHSIETVLIP-ERDHLTLCVSSQVGCAMG 115
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAA 288
C FC TG+ G R+L EI+EQ + ++ L+ + N+V MGMGEPL N + VIKA
Sbjct: 116 CVFCATGKQGFIRNLKPGEIIEQVIRTKQSLAFP-DRLRNIVLMGMGEPLANYDAVIKAL 174
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++ G++FS RKVT+ST GLVP++K+ + LAVSLN +E R+ +MPINRKY
Sbjct: 175 RNIIDPDGMNFSHRKVTLSTCGLVPEIKKLAKDITINLAVSLNGADNETRSRLMPINRKY 234
Query: 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 408
L LIE N + FEY+++ ND DA L L+ G+ KINLI N
Sbjct: 235 PLEALIEAC-SSFPLPNRRMITFEYILIKDENDRDRDAHNLCRLLSGLRAKINLIQLNAA 293
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL-GNPGA 457
S F+ + EK++ F+ IL T +R S+G D +AACGQL G G+
Sbjct: 294 PDSPFSIPSLEKVLHFQEILTDRHFTAIIRKSKGRDILAACGQLKGTSGS 343
>gi|49474851|ref|YP_032892.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1]
gi|81648360|sp|Q6G592.1|RLMN_BARHE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49237656|emb|CAF26836.1| hypothetical protein BH00200 [Bartonella henselae str. Houston-1]
Length = 408
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 208/371 (56%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
N++ K+ S++ L G+S E+ + +++ Q M LW LY + DE+
Sbjct: 20 NIIVKERSKLSLIGLSQDEMAEALKAIGIPERQTRMRVRQLWHWLYVRGV--SNFDEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K +++ +H + S DGTRK L + IETV IP GR
Sbjct: 78 ISKPMQEIFKKHFSIARPEIAGEQISKDGTRKWLLRFPPRGAGRPVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FCYTG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCYTGTQVLVRNLTAEEILAQLLVARDCLGDFPDRNTPDGAIVPV 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP + + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPGMIRTGEE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL++ R+ N ++ FEYVML VND
Sbjct: 257 IGVMLAISLHAVNDTLRDMLVPINKKYPLALLMDACRQYPGLSNAKRITFEYVMLKDVND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAKRL+ L++GIP KINLI FNP GS + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKRLVQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|197122634|ref|YP_002134585.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K]
gi|196172483|gb|ACG73456.1| radical SAM enzyme, Cfr family [Anaeromyxobacter sp. K]
Length = 372
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 191/329 (58%), Gaps = 11/329 (3%)
Query: 142 WKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL 201
W L G A +E+ + + ++ L+E L S+DGT K + DG
Sbjct: 39 WLHLRG----AASLEEMTDVPRALRERLAEGTRLTTLERATEQRSADGTIKWTWRTGDGK 94
Query: 202 VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA-RRLLS 260
+IE+V +P R T+CVS+QVGCA+ C FC TG MGL R+L EIV+Q A RRL+
Sbjct: 95 LIESVYMP-ETDRKTLCVSTQVGCAVGCTFCMTGTMGLARNLGPGEIVDQVHRANRRLIE 153
Query: 261 SEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
G +TN+VFMGMGEPL N ++ A ++++ E G +FS R VTVSTSGLVP ++
Sbjct: 154 LGEGEGPRPLTNLVFMGMGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMR 213
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E+ LAVSLNATTD R+ IMPINR+Y L L+ RE K ++ FEYVML
Sbjct: 214 RLGEETQVKLAVSLNATTDAQRDAIMPINRRYPLAELLRACRE-FPMKQGRRITFEYVML 272
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
GVND+ +DA+RL L++GIP K+NLI +N + G F + FR++L T
Sbjct: 273 GGVNDAPEDAERLARLLRGIPAKVNLIPYNENPGLGFAAPAPAAVERFRDLLVARNVTAV 332
Query: 437 LRLSRGDDQMAACGQLGNPGAIQAPLLRV 465
+R +RG D AACGQL G P R
Sbjct: 333 VRKNRGTDIAAACGQLAAEGGPGDPRRRA 361
>gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC
25196]
gi|123768149|sp|Q2Y6F3.1|RLMN_NITMU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis
ATCC 25196]
Length = 365
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 190/334 (56%), Gaps = 15/334 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H T D + L K ++ L+ A + T+SDGTRK L + G IET
Sbjct: 33 WIHRTGEADFDAMSDLAKGLREKLAAAAVIEPPKVISDHTASDGTRKWLLSVGAGNGIET 92
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----S 261
V IP R T+C+SSQVGCA+ C FC TGR G R+LT AEI+ Q +A + L+ S
Sbjct: 93 VYIP-ETSRGTLCISSQVGCALACAFCSTGRQGFNRNLTVAEIIGQLWWANKALTETFTS 151
Query: 262 EVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
E G ITN+V MGMGEPL N ENV+ + ++M+ + S R+VTVSTSG++P + +
Sbjct: 152 EAGRERPITNIVMMGMGEPLTNFENVVTSLDLMLDDNAYGLSRRRVTVSTSGIIPAMDRL 211
Query: 319 LNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG 378
ALAVSL+A D +R+ ++PINRKY + L+ L + FEYVML G
Sbjct: 212 RERCPVALAVSLHAPNDALRDQLVPINRKYPIRELLGACERYLQSAPRDFITFEYVMLDG 271
Query: 379 VNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 438
VNDS A+ L+ LV+ IPCK+NLI FNP S F ++ + FR++L AG +R
Sbjct: 272 VNDSVAQARELVQLVRDIPCKLNLIPFNPFPDSGFRRSSANAVSRFRDVLMEAGLVTTVR 331
Query: 439 LSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTA 472
+RGDD AACGQL G + RVP A
Sbjct: 332 KTRGDDIAAACGQLA--GKVLDKTRRVPRNIAEA 363
>gi|294084982|ref|YP_003551742.1| hypothetical protein [Candidatus Puniceispirillum marinum IMCC1322]
gi|292664557|gb|ADE39658.1| hypothetical protein SAR116_1415 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 372
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 203/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT---DELEGLNKDFKKML 169
R+ L G+S T L++ + + +A +W+ +W H DE+ L K ++ L
Sbjct: 10 RINLLGLSQTALEEQIIAAGLPKFRAKQIWRW-----VWRHGLTNFDEMSDLGKPVREQL 64
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ + ++ L S DGT K L DG E V IP ++ R T+C+SSQVGC + C
Sbjct: 65 ATMYKADRPAVSQRLNSKDGTIKWLLRFPDGNEAEAVYIP-DKTRGTLCISSQVGCTLTC 123
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-----ITNVVFMGMGEPLHNVENV 284
FC+TG L R+LT EI Q + A L+ +TN+V MGMGEPL N ENV
Sbjct: 124 SFCHTGTQKLVRNLTVDEICGQVMLAMDELADWPAGRNGRRLTNIVLMGMGEPLFNYENV 183
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+A I++ +G+ S R++T+STSG+VP++K+ E LA+SL+AT DE+R+ ++PI
Sbjct: 184 AEAMRIIMSGEGVAVSKRRITLSTSGVVPEIKRAGEELGVNLAISLHATRDELRDELVPI 243
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
NRKYKL LIE R N ++ +EYVML G+NDS +D ++L+ L++GIP K+NLI
Sbjct: 244 NRKYKLAALIEACRNYPGLSNARRITWEYVMLDGINDSDEDCRQLLALIKGIPSKLNLIP 303
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP GS + + +++ F + AG +R RG D +AACGQL
Sbjct: 304 FNPWPGSPYVCSKGDRIDAFAKRVLKAGYASPVRTPRGRDILAACGQL 351
>gi|83952609|ref|ZP_00961339.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
ISM]
gi|83835744|gb|EAP75043.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
ISM]
Length = 395
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 214/375 (57%), Gaps = 22/375 (5%)
Query: 96 SDAGGGDNINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDD 149
+DA ++ +P+K V L G++ +++ + +H QA M +W+ +Y
Sbjct: 3 TDAPITQDVMTIPRKLPEGPVNLVGLTRDKMRDVLIAHGTPEKQAKMRVSQIWQWIYQ-- 60
Query: 150 IWA-HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVI 208
W D + L K ++ L+E + SSDGTRK L + G +E V I
Sbjct: 61 -WGVRDFDAMTNLAKAYRAELAEKFVIEIPEVVSKQVSSDGTRKYLVRIAGGHEVEVVYI 119
Query: 209 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------- 259
P R T+CVSSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 120 P-EEDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIIGQVMMARDDLGEWPEQGAP 178
Query: 260 SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319
E ++N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ +
Sbjct: 179 KDETRLLSNIVLMGMGEPLYNFDNVRDAMKIAMDAEGIQLSRRRITLSTSGVVPEIARTA 238
Query: 320 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGV 379
E C LA+S +ATTDE RN ++PIN+++ + L++ L N+ ++ FEYVML GV
Sbjct: 239 QEIGCQLAISFHATTDETRNKLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGV 298
Query: 380 NDSFDDAKRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 437
ND+ DDA+RLI +++ IP KINLI FN G+ + +++ ++ F +I+ AG +
Sbjct: 299 NDTDDDARRLIQMIKDHAIPAKINLIPFNEWPGAPYKRSSNNRIRAFADIIYKAGYASPI 358
Query: 438 RLSRGDDQMAACGQL 452
R RG+D MAACGQL
Sbjct: 359 RTPRGEDIMAACGQL 373
>gi|386351421|ref|YP_006049669.1| hypothetical protein F11_17060 [Rhodospirillum rubrum F11]
gi|346719857|gb|AEO49872.1| hypothetical protein F11_17060 [Rhodospirillum rubrum F11]
Length = 364
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 135/273 (49%), Positives = 172/273 (63%), Gaps = 7/273 (2%)
Query: 186 SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTA 245
S DGTRK L DG ETV IP + R +CVSSQVGC + C+FC+TG L R+LTA
Sbjct: 54 SEDGTRKWLLRFPDGNEAETVYIPED-DRGALCVSSQVGCTLTCRFCHTGTQLLVRNLTA 112
Query: 246 AEIVEQAVFARRLL------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
EIV Q + AR + E ++N+V MGMGEPL+N +NV KA I++ +G+
Sbjct: 113 HEIVGQFMAARDAYGEWPSPTDESRQLSNIVLMGMGEPLYNYDNVAKAIGILLDNEGIAV 172
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R++T+STSG+VP +++ E LAVSL+A DE+R+ IMPINRKY L L+ RE
Sbjct: 173 SRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAARDEIRDEIMPINRKYPLAELMAACRE 232
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N ++ FEYVML GVNDS DA+ LI LV+G+PCK NLI FNP GS F
Sbjct: 233 YPGASNARRITFEYVMLKGVNDSEADARALIKLVEGVPCKFNLIPFNPWPGSGFECPPIR 292
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F NIL AG T +R+ RG D +AACGQL
Sbjct: 293 HIERFANILFEAGYTAPIRMPRGRDILAACGQL 325
>gi|218782479|ref|YP_002433797.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans
AK-01]
gi|218763863|gb|ACL06329.1| radical SAM enzyme, Cfr family [Desulfatibacillum alkenivorans
AK-01]
Length = 359
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 199/334 (59%), Gaps = 6/334 (1%)
Query: 120 SFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALS 179
+ EL +W+ H +P +A + + +Y A D + L K +++LS+H L
Sbjct: 14 THEELVRWLADHKLKPYRAFQILQWVYQRQ--ADSFDVMTNLAKRHRQLLSDHFTIGRLK 71
Query: 180 LKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL 239
+ SSDG+RK LF DG IETV+IP +G T+CVS+QVGCAM C+FC T MGL
Sbjct: 72 ILQTQDSSDGSRKFLFQCADGASIETVLIP-EKGHHTLCVSTQVGCAMGCKFCCTASMGL 130
Query: 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV-HEQGLH 298
R L A EI+ Q + + + + N+VFMGMGEPL N +NV +A +I+ ++ GL
Sbjct: 131 TRSLQANEIISQIRDVQATME-DPEHLRNLVFMGMGEPLANWDNVKQAMDIITDNDWGLR 189
Query: 299 FSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
FS R+VT+ST GLVP++ ++ LAVSLNA +E+R+ IMP+N+K+ + L++ +
Sbjct: 190 FSGRRVTISTVGLVPKMAAVGKDTRVKLAVSLNAPDNEIRDQIMPVNKKHPIEELLQACK 249
Query: 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
+ + +V FEYV+L GVNDS A++L L+ PCKINLI +NPH S F
Sbjct: 250 D-FPLRPGRRVTFEYVLLKGVNDSPAHARKLGKLLAHQPCKINLIPYNPHENSPFERPDP 308
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
E + F +L TV +R S+G D AACGQL
Sbjct: 309 EAVDAFYKVLMDKNYTVIVRHSKGLDIKAACGQL 342
>gi|420137994|ref|ZP_14645937.1| hypothetical protein PACIG1_1435 [Pseudomonas aeruginosa CIG1]
gi|421158384|ref|ZP_15617643.1| hypothetical protein PABE173_1260 [Pseudomonas aeruginosa ATCC
25324]
gi|403249259|gb|EJY62772.1| hypothetical protein PACIG1_1435 [Pseudomonas aeruginosa CIG1]
gi|404549671|gb|EKA58518.1| hypothetical protein PABE173_1260 [Pseudomonas aeruginosa ATCC
25324]
Length = 379
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+Q+ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 8 KVNLLGLTQPQLEQFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKL 62
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 63 KASAEIRGPEIVSQDISADGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 121
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 122 SFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 181
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A NIM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 182 VAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPIN 241
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY LG+L++ R + +VL EY +L VND + A+++I L++ PCKINLI
Sbjct: 242 KKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKDTPCKINLIP 301
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V +R +RGDD AACGQL
Sbjct: 302 FNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 349
>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
Length = 376
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 208/352 (59%), Gaps = 17/352 (4%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+V L ++ ++++ + S +P Q ++ W G +A T+ L K ++
Sbjct: 3 AQKVNLLNYNYQQMRELLSSWDEQPYRAQQIIQWIHQAGLTDFAKMTN----LGKTLREK 58
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAM 227
LS+ + + + S+DGT K L L+ G IETV IP NRG T+CVSSQVGCA+
Sbjct: 59 LSQLSCIKLPEIIACQKSNDGTHKWLLKLECGNCIETVFIPEANRG--TLCVSSQVGCAL 116
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVEN 283
NC FC T + G R+LT AEI+ Q A R LS G+ +TNVV MGMGEPL N +N
Sbjct: 117 NCSFCSTAKQGFNRNLTTAEIIGQVWLAVRELSQSQGNHDKRVTNVVMMGMGEPLLNFDN 176
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ A +IM+ + S R+VT+STSG++P L++ S ALAVSL+A DE+RN ++P
Sbjct: 177 VVSAMDIMMDDFAYGLSKRRVTLSTSGVLPDLERLREVSPVALAVSLHAPNDELRNELVP 236
Query: 344 INRKYKLGLLIETLREELHFKNN--YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
IN+KY L L+ + ++FKN KV FEYVML GVND + A +LI L++ IP K+N
Sbjct: 237 INKKYPLAQLMALCK--IYFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIKLLRNIPAKVN 294
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
LI FNP +Q+ ++ E + FR L G R +RGDD AACGQL
Sbjct: 295 LIPFNPFPMTQYERSSQETIDAFREKLMAHGINTITRKTRGDDIDAACGQLA 346
>gi|399519572|ref|ZP_10760367.1| radical SAM protein [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112668|emb|CCH36925.1| radical SAM protein [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 382
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 207/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G D +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFESIGEKRFRAGQ-VMKWIHHFGVDDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP N GR T+CVSSQ GCA++C
Sbjct: 62 EASAEIRGPEVVSENISADGTRKWVVRVASGSCVETVYIPQN-GRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LT+AEI+ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSDLTSAEIIGQVWIANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 SAMQIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRNQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L GVND + A++++ L+ +PCKINLI
Sbjct: 241 KKYPLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQPEHAEQMVALLADVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L AG V +R +RGDD AACGQL
Sbjct: 301 FNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDAACGQL 348
>gi|397687678|ref|YP_006524997.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 10701]
gi|395809234|gb|AFN78639.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 10701]
Length = 381
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+ + S FR GQ +M W +G D + D + + K ++ L
Sbjct: 7 KVNLLGLTQPQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNIGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+E R + SSDGTRK + + G +ETV IP N GR T+CVSSQ GCA++C
Sbjct: 62 KASSEIRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQN-GRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LTAAEI+ Q A + S +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSDLTAAEIIGQVWIANKSFGSVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A N+M+ + G S RKVT+STSG+ P + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMNLMMDDLGYGISKRKVTLSTSGVAPMIDRLGEVIDVSLALSLHAPNDELRNQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +++ R + +VL EY +L GVND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLAVVLGACRNYISRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL AG V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKAGHNVTVRTTRGEDIDAACGQL 348
>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
loihiensis L2TR]
gi|81363032|sp|Q5QYC0.1|RLMN_IDILO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
Length = 378
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 198/337 (58%), Gaps = 14/337 (4%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFKKMLSEHAEFRALSL 180
++++ R +P +A + K LY DD DE+ LNK ++ L + AE RA +
Sbjct: 19 IKEFFREMGEKPFRAEQVMKWLYHFCVDDF-----DEMTNLNKALREKLKQVAEIRAPEV 73
Query: 181 KDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
++ SSDGT K L DG +ETV IP R T+CVSSQVGCA+ C FC TG G
Sbjct: 74 REQQQSSDGTIKFAMTLFDGQDVETVWIP-EGDRATLCVSSQVGCALECTFCSTGAQGFN 132
Query: 241 RHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQG 296
R+L+ AEI+ Q +LL + + +TNVV MGMGEPL N+ NV+ A +M+ + G
Sbjct: 133 RNLSVAEIIGQVWRVNQLLGAYGKTGIKPVTNVVMMGMGEPLLNLNNVVPAMELMLDDLG 192
Query: 297 LHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356
S R+VT+STSG+VP L++ + LA+SL+A DE+RN I+PIN+KY + + +
Sbjct: 193 FGLSKRRVTLSTSGVVPALEKLRERIDVMLAISLHAPDDELRNEIVPINKKYNIEEFLAS 252
Query: 357 LREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP 415
R + K KV EYVML VNDS D A L ++ P KINLI FNP GS +
Sbjct: 253 SRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALAKTLKDTPSKINLIPFNPFPGSDYGR 312
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 313 SSNSRIDRFAKVLMEYGLTVMVRKTRGDDIDAACGQL 349
>gi|253999428|ref|YP_003051491.1| radical SAM enzyme, Cfr family [Methylovorus glucosetrophus SIP3-4]
gi|253986107|gb|ACT50964.1| radical SAM enzyme, Cfr family [Methylovorus glucosetrophus SIP3-4]
Length = 367
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/330 (43%), Positives = 189/330 (57%), Gaps = 11/330 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G H D++ + K + L + AE +K S DGTRK
Sbjct: 25 FRAKQ-LMRWMHHFG----VHDFDQMTDIAKSLRDKLKDQAEITPPGIKLEQISEDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L G +ETV IP R T+CVSSQVGCA+ C FC TGR G R+LT +EI+ Q
Sbjct: 80 WLIDAGTGNGVETVFIP-EAERGTLCVSSQVGCALECTFCSTGRQGFNRNLTVSEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
A + L + I+NVV MGMGEPL N +NV+ A NIM+ + S R+VTVSTS
Sbjct: 139 WVANKALGRDPKGDRIISNVVMMGMGEPLANFDNVVTALNIMLDDSAYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VP + + ALAVSL+A D +R+ I+PIN+KY + L+ + L V
Sbjct: 199 GMVPAMDRLREACPVALAVSLHAPNDALRDVIVPINKKYPIKELMAACQRYLEKAPRDFV 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVNDS + A++L+ +V+ +PCK NLI FNP S + + E + FR++L
Sbjct: 259 TFEYVMLDGVNDSVEHARQLLDIVRDVPCKFNLIPFNPFPNSGYDTSKPEAIRRFRDVLM 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
A V R +RGDD AACGQL G +Q
Sbjct: 319 QADYVVTTRKTRGDDIDAACGQLA--GKVQ 346
>gi|319406423|emb|CBI80063.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 409
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 204/366 (55%), Gaps = 26/366 (7%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDF 165
K ++ L G+S E+ Q +++ Q M LW LY I +H DE+ ++K
Sbjct: 25 KQPKLPLIGLSHDEMAQALQAIGVPEHQTQMRVRQLWHWLYVRGI-SHF-DEMLNISKPM 82
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG-----LVIETVVIPCNRGRTTVCVS 220
++ML EH + S DGTRK L + +ETV IP GR T+C+S
Sbjct: 83 REMLKEHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEVETVYIP-EEGRGTLCIS 141
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------------EVGSI 266
SQVGC + C FC+TG L R+LT EI+ Q + AR L E I
Sbjct: 142 SQVGCTLTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDSAIIPIEGRKI 201
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
TN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E L
Sbjct: 202 TNIVMMGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVVPRIIRTGKEIGVML 261
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
A+SL+A D +R+ ++PIN+KY L LL+E R N ++ FEYVML VNDS DDA
Sbjct: 262 AISLHAVHDALRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDA 321
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+RLI L++GIP KINLI FNP GS + + E + F +I+ AG +R+ RG D +
Sbjct: 322 RRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEHIERFADIINKAGYASPIRVPRGRDIL 381
Query: 447 AACGQL 452
AACGQL
Sbjct: 382 AACGQL 387
>gi|406912894|gb|EKD52413.1| hypothetical protein ACD_62C00033G0003 [uncultured bacterium]
Length = 344
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 199/337 (59%), Gaps = 5/337 (1%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
+K +S +LQ +++ +A + + LY D+ + ++ + F+++L E +
Sbjct: 7 IKSLSLQDLQNELKTLGLEGYRASQVKRWLYKFDVDSFA--KMTNIAGKFREILKEQFDL 64
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 235
L + + S DGT+K L L+DG +E V+IP + GR T+CVS+QVGC M C FC TG
Sbjct: 65 LRLPVVKMQLSKDGTKKYLLQLEDGHCVEVVLIPAD-GRNTLCVSTQVGCGMCCAFCLTG 123
Query: 236 RMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
MGL R+LT EI+EQ RR L+ E ITN+VFMGMGEPL N ++ A +I++ +
Sbjct: 124 TMGLIRNLTQFEILEQVSAIRRTLA-EGERITNLVFMGMGEPLANTASLYPAIDILLDAE 182
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 355
FS VTVST GL Q++ F +++ LA+SLNATTD VR+ IMPINRK + LI
Sbjct: 183 CFDFSRNHVTVSTCGLANQIESFGDKTQARLAISLNATTDTVRDQIMPINRKCNIKALI- 241
Query: 356 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP 415
T ++ ++ EYVML G+NDS DDA+RL+ L+ G+ KINL+ FN + +
Sbjct: 242 TACHKMKLPQRSRITIEYVMLGGINDSLDDARRLVRLLNGLRVKINLLPFNENPQMPYKR 301
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ EK+ F+ L G R SRG D ACGQL
Sbjct: 302 PSHEKVRAFQQYLMDKGLVAIERKSRGQDISGACGQL 338
>gi|94264318|ref|ZP_01288111.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
gi|93455284|gb|EAT05494.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
Length = 345
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 143/343 (41%), Positives = 196/343 (57%), Gaps = 11/343 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDI--WAHCTDELEGLNKDFKKMLSEHA 173
LK ++ EL WV + +P +A ++ LY D +A TD + K + +L+E A
Sbjct: 8 LKNLTLPELTAWVETLNLKPFRARQIFSWLYRPDFSDFAQMTD----IAKHVRALLAEKA 63
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
F L S+DGT K F L DG +IE+V+IP R T+CVSSQVGCAM C FC
Sbjct: 64 TFSRLEAAKEEHSTDGTVKFAFRLSDGHLIESVLIP-EEDRHTLCVSSQVGCAMGCNFCL 122
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLL---SSEVGSITNVVFMGMGEPLHNVENVIKAANI 290
TG MG R+LT AE+V Q A L + G + N+VFMGMGEPL N +N+IKA NI
Sbjct: 123 TGTMGFIRNLTVAEMVGQVDQAAHWLWQRGAGSGRLNNLVFMGMGEPLLNFDNLIKAINI 182
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350
++ ++G S R++TVST G+VP++K+ + LAVSL+A R +MP+NR Y L
Sbjct: 183 LMEQRGHDLSGRRITVSTCGIVPRMKELGEKVPVNLAVSLHAADHATREQLMPVNRTYPL 242
Query: 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
L++ R + +++ EY +LAG+NDS A+ L+ + GI CKIN++ FN
Sbjct: 243 AELLQACR-QYPLPPRRRIMIEYALLAGINDSPAAARLLVKQLHGIRCKINILPFNETPA 301
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ + FR IL AG T LR SRG D AACGQL
Sbjct: 302 FPYRCPDPATIEAFRQILRRAGHTTLLRTSRGADIAAACGQLA 344
>gi|84500532|ref|ZP_00998781.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597]
gi|84391485|gb|EAQ03817.1| radical SAM superfamily protein [Oceanicola batsensis HTCC2597]
Length = 398
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 215/386 (55%), Gaps = 28/386 (7%)
Query: 81 TCSPQIPLATIEDYCS----DAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPG 136
T +PQ P+ +D + GG NI L ++ R L M E Q +R +
Sbjct: 2 TDAPQTPIT--QDVMTIPRKQPGGKPNIVGLTREALRQALIDMGTPEKQARMRVN----- 54
Query: 137 QALMLWKRLYGDDIWA-HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
+W+ +Y W ++ L +D++ L+E + S+DGTRK L
Sbjct: 55 ---QVWQWIYH---WGVRDFSQMTNLARDYRGKLTETFRIDLPEMVSKQVSADGTRKYLM 108
Query: 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ G +ETV IP R T+C+SSQVGC + C FC+TG L R+L+A EIV Q + A
Sbjct: 109 RIAGGHEVETVYIP-EADRGTLCISSQVGCTLTCSFCHTGTQRLVRNLSADEIVGQIMVA 167
Query: 256 RRLLSS---------EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV 306
R L E ++N+V MGMGEPL+N +NV A I + +G+ S R++T+
Sbjct: 168 RDDLGEWPVPGAPKREERLLSNIVLMGMGEPLYNFDNVRDAMKIAMDGEGISLSRRRITL 227
Query: 307 STSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN 366
STSG+VP++ + E C LAVS +ATTDEVR+ ++PIN+++ + L+ LR+ N+
Sbjct: 228 STSGVVPEIARCAEEIGCLLAVSFHATTDEVRDRLVPINKRWNIETLLTALRDYPRLSNS 287
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
++ FEYVML VNDS DA+RL+ L+ GIP KINLI FN G+ + + ++ F +
Sbjct: 288 ERITFEYVMLKDVNDSDADARRLVKLISGIPAKINLIPFNEWPGAPYERSDWSRIESFAD 347
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQL 452
I+ AG +R RG+D MAACGQL
Sbjct: 348 IVHKAGYASPIRTPRGEDIMAACGQL 373
>gi|86158056|ref|YP_464841.1| hypothetical protein Adeh_1631 [Anaeromyxobacter dehalogenans
2CP-C]
gi|123750314|sp|Q2IIC5.1|RLMN_ANADE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|85774567|gb|ABC81404.1| 23S rRNA m(2)A-2503 methyltransferase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 372
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 191/329 (58%), Gaps = 11/329 (3%)
Query: 142 WKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL 201
W L G A +E+ + + ++ L+E L S+DGT K + DG
Sbjct: 39 WLHLRG----AASLEEMTDVPRALRERLAEGTRLTTLERATEQRSADGTIKWTWRTRDGK 94
Query: 202 VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA-RRLLS 260
++E+V +P R T+CVS+QVGCA+ C FC TG MGL R+L EIV+Q A RRL+
Sbjct: 95 LVESVYLP-ETDRKTLCVSTQVGCAVGCTFCMTGTMGLARNLEPGEIVDQVHRANRRLIE 153
Query: 261 SEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
G +TN+VFMGMGEPL N ++ A ++++ E G +FS R VTVSTSGLVP ++
Sbjct: 154 LGEGEGPRPLTNLVFMGMGEPLANYRSLKVALDLLLSEDGPNFSHRHVTVSTSGLVPVMR 213
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E+ LAVSLNATTD R+ IMPINR+Y L L+ R E K ++ FEYVML
Sbjct: 214 RLGEETQVKLAVSLNATTDAQRDAIMPINRRYPLAELLRACR-EFPMKQGRRITFEYVML 272
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
GVND+ +DA+RL L++GIP K+NLI +N + G F + FR++L T
Sbjct: 273 GGVNDAPEDAERLARLLRGIPAKVNLIPYNENPGLGFAAPAPGAVERFRDLLVARNVTAV 332
Query: 437 LRLSRGDDQMAACGQLGNPGAIQAPLLRV 465
+R +RG D AACGQL G P R
Sbjct: 333 VRKNRGTDIAAACGQLAAEGGPGDPRRRA 361
>gi|254464850|ref|ZP_05078261.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I]
gi|206685758|gb|EDZ46240.1| radical SAM enzyme, Cfr family [Rhodobacterales bacterium Y4I]
Length = 413
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 212/367 (57%), Gaps = 23/367 (6%)
Query: 103 NINVLPKK---GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCT 155
++ LP+K G ++ L G++ +++ + H QA M +W+ +Y W
Sbjct: 10 DVLTLPRKDPEGGKINLVGLTRDRMREVLMEHGTPEKQAKMRVGQIWQWIYQ---WGKRD 66
Query: 156 -DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGR 214
E+ L K ++ L+E E R + S+DGTRK L + G +E V IP R
Sbjct: 67 FAEMTNLAKAYRAQLAETFEIRIPEVVSKQVSTDGTRKYLVRIAGGHEVEVVYIP-EEDR 125
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGS 265
T+C+SSQVGC + C FC+TG L R+LT AEIV Q + AR L E
Sbjct: 126 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTPAEIVGQVMMARDDLEEWPVPGAPKEETRL 185
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
++N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C
Sbjct: 186 LSNIVLMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEIGCL 245
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LA+S +ATT+E R+ ++PIN+++ + L++ L + N+ ++ FEYVML GVND+ +D
Sbjct: 246 LAISFHATTNETRDVLVPINKRWNIDELLQALADYPKASNSERITFEYVMLDGVNDTDED 305
Query: 386 AKRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
A RLI ++ IP KINLI FN GS + +++ ++ F NI+ AG +R +RGD
Sbjct: 306 AHRLIDHIKRYNIPAKINLIPFNEWPGSPYKRSSNNRIRAFANIIYQAGYASPIRKTRGD 365
Query: 444 DQMAACG 450
D MAACG
Sbjct: 366 DIMAACG 372
>gi|23012331|ref|ZP_00052443.1| COG0820: Predicted Fe-S-cluster redox enzyme [Magnetospirillum
magnetotacticum MS-1]
Length = 425
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 208/373 (55%), Gaps = 29/373 (7%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELE 159
+++LP G + L G + L+Q + +A M +W LY A E+
Sbjct: 28 LSILP--GRKASLVGQTREGLKQALIGIGVPEREARMRTSQIWHWLYVRG--AREFSEMT 83
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--------DDGLVIETVVIPCN 211
+ K K L++H + S DGTRK L + + G IE V IP +
Sbjct: 84 NVGKGLKAQLAQHFTLDRPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYIPGD 143
Query: 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS------ 265
R T+CVSSQVGC + C FC+TG L R+L+ AEIV Q V AR L G
Sbjct: 144 -DRGTLCVSSQVGCTLTCSFCHTGTQRLVRNLSTAEIVSQLVVARDALGDFTGQMPGKDG 202
Query: 266 ------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319
+TN+VFMGMGEPL+N++ VI A +M +GL S R++TVSTSG+VPQ+++
Sbjct: 203 GEAGRLVTNIVFMGMGEPLYNLDAVIDAIAVMSDPEGLALSRRRITVSTSGVVPQIERLG 262
Query: 320 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGV 379
E+N LA+SL+A DE+R+ ++P+NRKY + L+E R N ++ FEYVML GV
Sbjct: 263 LEANAMLAISLHAVRDELRDELVPLNRKYPIAQLLEACRNYPGLSNARRITFEYVMLKGV 322
Query: 380 NDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
NDS DA+ L+ L++GIP KINLI FNP GS++ + E++ F + AG +R
Sbjct: 323 NDSDADARALVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEFVFNAGYASPVRT 382
Query: 440 SRGDDQMAACGQL 452
RG D +AACGQL
Sbjct: 383 PRGRDILAACGQL 395
>gi|395788152|ref|ZP_10467728.1| ribosomal RNA large subunit methyltransferase N [Bartonella
birtlesii LL-WM9]
gi|395409934|gb|EJF76519.1| ribosomal RNA large subunit methyltransferase N [Bartonella
birtlesii LL-WM9]
Length = 409
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 207/371 (55%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
NV K+ S++ L G+S E+ Q +++ Q M LW LY I DE+
Sbjct: 20 NVTVKEDSKLSLIGLSQDEMVQALKAIGIPEHQTRMRVRQLWHWLYVRGI--SNFDEMRN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++ML H + S DGTRK L + IETV IP GR
Sbjct: 78 ISKSMQEMLKSHFSIARPEIIGEQISKDGTRKWLLRFPARGAGRPVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCHTGTQLLVRNLTAEEILAQLLVARDCLGDFPNKDTPDGAIVPV 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I +GL S R++T+STSG+VP + + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGEGLSLSKRRITLSTSGVVPGIIRTGEE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL++ R+ N ++ FEYVML +ND
Sbjct: 257 IGVMLAISLHAVHDTLRDMLVPINKKYPLTLLMDACRQYPGLSNAKRITFEYVMLKDIND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAKRLI L++ IP KINLI FNP GS + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKRLIQLLKDIPAKINLIPFNPWPGSNYQCSDWEQIERFADVINKAGYASPIRVPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|158522322|ref|YP_001530192.1| radical SAM protein [Desulfococcus oleovorans Hxd3]
gi|205829745|sp|A8ZV25.1|RLMN_DESOH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|158511148|gb|ABW68115.1| radical SAM enzyme, Cfr family [Desulfococcus oleovorans Hxd3]
Length = 371
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 204/352 (57%), Gaps = 11/352 (3%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N LP++ ++ ++ W+ +H P +A ++K L+ A D++ ++
Sbjct: 20 NSTALPQE-----IQNLTRARFADWLNAHNIAPYRADQVFKWLFVH--RAESFDQMTNIS 72
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + +L+E L + S+DGTRK LF L DG IE+V+IP T+CVS+Q
Sbjct: 73 KPVRTLLAESFIIGRLKIARTQQSADGTRKYLFELSDGEHIESVLIP-EEDHFTLCVSTQ 131
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE 282
VGCA C FC T + G R+LT AEI Q + A + L+ E +TN+V MGMGEPL N +
Sbjct: 132 VGCAQGCAFCMTAKKGFVRNLTPAEITGQVLGALKTLAPE-ERLTNIVLMGMGEPLANYD 190
Query: 283 NVIKAANIMVH-EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
NVI + + + + GL FS R+VT+STSGLVP++ + LAVSLNAT ++ R+ +
Sbjct: 191 NVITSLDTICDGDCGLQFSTRRVTLSTSGLVPRMAPLGLATTVNLAVSLNATDNKTRDML 250
Query: 342 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
MPIN+ Y + +L+E R N K+ FEY+++AGVNDS DA RL+ L++ I K+N
Sbjct: 251 MPINKTYPIEVLLEACRT-YPLSNRRKITFEYILMAGVNDSEKDALRLVKLLRSIKAKVN 309
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
LI FN H G+ F D + F+ IL TV R S+G D AACGQL
Sbjct: 310 LIPFNEHEGAAFKRPDDAAIERFKQILHDRQYTVMTRQSKGADISAACGQLA 361
>gi|429212017|ref|ZP_19203182.1| putative Fe-S-cluster redox enzyme [Pseudomonas sp. M1]
gi|428156499|gb|EKX03047.1| putative Fe-S-cluster redox enzyme [Pseudomonas sp. M1]
Length = 380
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 206/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L GM+ +L+++ S FR GQ +M W +G A D + + K ++ L
Sbjct: 10 LLGMTKPQLEEFFESIGEKRFRAGQ-VMQWIHHFG----AEDFDAMTNVGKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP N GR T+CVSSQ GCA++C FC
Sbjct: 65 AEIRGPEVVSQDISSDGTRKWVVRVASGSCVETVYIPQN-GRGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVIKAA 288
TG+ G LT+AEI+ Q A + + G +ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSDLTSAEIIGQVWLANKSFGTVPGKIDRAITNVVMMGMGEPLLNFDNVVTAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+IM+ + G S RKVT+STSG+VP + + ++ +LA+SL+A DE+RN ++PIN+KY
Sbjct: 184 SIMMEDFGYGISKRKVTLSTSGVVPMIDKLGEVTDVSLALSLHAPNDELRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L++ + + +VL EY +L VND + A+++I L++ IPCKINLI FNP
Sbjct: 244 PLAVLLDACQRYIGRLGKERVLTVEYTLLKDVNDQPEHAEQMIALLKEIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L G V +R +RGDD AACGQL
Sbjct: 304 FPHSGYERPSNNSIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 348
>gi|240138201|ref|YP_002962673.1| Fe-S protein [Methylobacterium extorquens AM1]
gi|254560761|ref|YP_003067856.1| Fe-S containing enzyme [Methylobacterium extorquens DM4]
gi|418059752|ref|ZP_12697691.1| Ribosomal RNA large subunit methyltransferase N [Methylobacterium
extorquens DSM 13060]
gi|240008170|gb|ACS39396.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
AM1]
gi|254268039|emb|CAX23910.1| putative Fe-S containing enzyme (yfgB) [Methylobacterium extorquens
DM4]
gi|373566694|gb|EHP92684.1| Ribosomal RNA large subunit methyltransferase N [Methylobacterium
extorquens DSM 13060]
Length = 425
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 188/316 (59%), Gaps = 21/316 (6%)
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--------DDGLVIETVVI 208
E+ + K K L++H + S DGTRK L + + G IE V I
Sbjct: 81 EMTNVGKGLKAQLADHFTLERPEVVTEQVSRDGTRKWLLRMAPTGAHDHNRGAEIECVYI 140
Query: 209 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--- 265
P + R T+CVSSQVGC + C FC+TG L R+L+ AEIV Q V AR L G
Sbjct: 141 PGD-DRGTLCVSSQVGCTLTCSFCHTGTQRLVRNLSTAEIVAQLVVARDALGDFTGQMPG 199
Query: 266 ---------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
+TN+VFMGMGEPL+N++ VI A +M ++GL S R++TVSTSG+VPQ++
Sbjct: 200 KDGGEPGRLVTNIVFMGMGEPLYNLDAVIDAIAVMSDQEGLALSRRRITVSTSGVVPQIE 259
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E+N LA+SL+A D++R+ ++P+NRKY + L++ R N ++ FEYVML
Sbjct: 260 RLGLEANAMLAISLHAVRDDLRDELVPLNRKYPIAQLLDACRNYPGLSNARRITFEYVML 319
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
GVNDS DA+ L+ L++GIP KINLI FNP GS++ + E++ F I+ AG
Sbjct: 320 KGVNDSDADARALVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVFTAGYASP 379
Query: 437 LRLSRGDDQMAACGQL 452
+R RG D +AACGQL
Sbjct: 380 VRTPRGRDILAACGQL 395
>gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|347540922|ref|YP_004848347.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|345644100|dbj|BAK77933.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
Length = 364
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/330 (44%), Positives = 193/330 (58%), Gaps = 11/330 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G+ + TD + K + L E AE R L SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQMGEADFDAMTD----IAKSLRCKLHESAEVRVPDLMVEQASSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP + R T+C+SSQVGCA+ C FC TGR G R+L+ AEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIPED-DRGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEPL N +NV+ A IM+ + G S R+VTVSTS
Sbjct: 139 WWANKAMGVTPKNERVISNVVMMGMGEPLANFDNVVSALQIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + ALAVSL+A D +R+ I+PIN+KY L L+ + L V
Sbjct: 199 GMVPQMDRLREACPVALAVSLHAPNDAIRDVIVPINKKYPLRELMAACQRYLEKAPRDFV 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML VND + A++LI LV+ +PCK NLI FNP S + +++ + FR IL
Sbjct: 259 TFEYVMLDDVNDRPEHARQLIELVKDVPCKFNLIPFNPFPNSGYERSSNNAIHRFREILQ 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
AG V +R +RGDD AACGQL G +Q
Sbjct: 319 EAGYVVTVRKTRGDDIDAACGQLA--GQVQ 346
>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
Length = 402
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 209/347 (60%), Gaps = 9/347 (2%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
+V L GM +L + S + +A+ + K ++ + A D++ ++K + L +
Sbjct: 32 KVNLLGMPEAKLIAFFESIGEKKFRAIQVMKWIH--QLGADNFDDMSNVSKALRAKLKDC 89
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE A + L S+DGTRK L + G V+ETV IP + R T+CVSSQVGC+++C FC
Sbjct: 90 AEIYAPEVVRQLDSADGTRKFLIRVAGGNVVETVFIP-DGDRGTLCVSSQVGCSLDCSFC 148
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARR----LLSSEVGSITNVVFMGMGEPLHNVENVIKAA 288
TG+ G R LTAAEI+ Q A + L ++ ++TNVV MGMGEPL N +NV+ A
Sbjct: 149 ATGKQGFNRDLTAAEIIGQVWIAAKSFGQLQANGPRTVTNVVMMGMGEPLLNFDNVVDAM 208
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
N+M+H+ S R+VT+STSG+VPQL + ++ LA+SL+A DE+RN ++PINRKY
Sbjct: 209 NLMMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHAPNDELRNELVPINRKY 268
Query: 349 KLGLLIETLREELHF--KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
+ +L+++ R + + K+ EY ++ VND A++L L++ +P KINLI FN
Sbjct: 269 PIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLAELLRDVPVKINLIPFN 328
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
P S + ++ + +F++IL G +R +RGDD AACGQL
Sbjct: 329 PFNLSNYKRVSNNALRKFQDILMQEGYITTVRTTRGDDIDAACGQLA 375
>gi|307543979|ref|YP_003896458.1| hypothetical protein HELO_1390 [Halomonas elongata DSM 2581]
gi|307216003|emb|CBV41273.1| K06941 [Halomonas elongata DSM 2581]
Length = 378
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 209/348 (60%), Gaps = 18/348 (5%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLS 170
L GM+ E++ + S FR Q +M W G C+D + L+K + LS
Sbjct: 15 LLGMTREEMEAFFLSIGEKKFRAAQ-VMKWIHQEG------CSDFASMTNLSKALRAQLS 67
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG-RTTVCVSSQVGCAMNC 229
E AE R S+ TSSDGTRK + ++DG +ETV+IP + G R T+CVSSQVGC+++C
Sbjct: 68 EVAEIRGPSVVYEGTSSDGTRKWVLEVEDGSYVETVLIPADNGKRRTLCVSSQVGCSLDC 127
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVI 285
FC TG+ G +R+LTAAEI+ Q A + +TNVV MGMGEPL N +NV+
Sbjct: 128 SFCSTGKQGFQRNLTAAEIIGQVWVASNSFGPRHDTANRPVTNVVMMGMGEPLLNYDNVV 187
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +M+ + G S R+VT+STSG+VP L + +E + +LA+SL+A DE+R+ ++P+N
Sbjct: 188 PAMKLMLDDNGYSLSKRRVTLSTSGVVPMLDRLGDELDVSLAISLHAANDELRSELVPLN 247
Query: 346 RKYKLGLLIETLREELHFKNNYK-VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
RKY + L++ + L ++ + V EY ++ VND + A++L L+Q +P KINLI
Sbjct: 248 RKYNIRTLLDACQRYLAKCDDTRMVTIEYTLIKDVNDQQEHARQLAELLQELPSKINLIP 307
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + + ++ F+ LA G T +R +RGDD AACGQL
Sbjct: 308 FNPFPHSGYETPSRNQVKRFQQWLADLGYTAPIRSTRGDDIDAACGQL 355
>gi|395792651|ref|ZP_10472075.1| ribosomal RNA large subunit methyltransferase N [Bartonella
vinsonii subsp. arupensis Pm136co]
gi|395432208|gb|EJF98197.1| ribosomal RNA large subunit methyltransferase N [Bartonella
vinsonii subsp. arupensis Pm136co]
Length = 411
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/393 (39%), Positives = 215/393 (54%), Gaps = 30/393 (7%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
V+ ++ S++ L G+S E+ +++ Q M LW LY + DE+ +
Sbjct: 21 VIVEESSKLSLIGLSQDEMMHALKTIGVPERQTRMRVRQLWHWLYVRGVSNF--DEMLNI 78
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTT 216
+K ++ML H + S DGTRK L + IETV IP GR T
Sbjct: 79 SKSMQEMLKSHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIP-EEGRGT 137
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------------E 262
+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L E
Sbjct: 138 LCLSSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVE 197
Query: 263 VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES 322
ITN+V MGMGEPL+N E V KA I +GL S R++T+STSG+VP + + E
Sbjct: 198 GRKITNIVMMGMGEPLYNFEAVKKALLIASDGEGLSLSKRRITLSTSGIVPGIIRTGEEI 257
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 382
LA+SL+A D +R+ ++PIN+KY L LL++ R N ++ FEYVML +NDS
Sbjct: 258 GVMLAISLHAVHDTLRDMLVPINKKYPLALLMDACRNYPGLSNAKRITFEYVMLKDINDS 317
Query: 383 FDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ RG
Sbjct: 318 LDDAKRLIQLLEGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNRAGYASPIRIPRG 377
Query: 443 DDQMAACGQLGNPGAIQAPLLRVPEKFQTAINA 475
D +AACGQL + + LR E+FQ A
Sbjct: 378 RDILAACGQLKS----ASERLRKSERFQLECGA 406
>gi|451940063|ref|YP_007460701.1| hypothetical protein BAnh1_00190 [Bartonella australis Aust/NH1]
gi|451899450|gb|AGF73913.1| hypothetical protein BAnh1_00190 [Bartonella australis Aust/NH1]
Length = 411
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/393 (39%), Positives = 216/393 (54%), Gaps = 37/393 (9%)
Query: 108 PKKGSRVL-------LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTD 156
PK G V+ L G+S E+ Q V++ QA M LW LY + C D
Sbjct: 16 PKVGDAVVKAELKLPLIGLSQDEMVQAVKAVGVPDHQARMRVRQLWHWLYVRGV--SCFD 73
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG-----LVIETVVIPCN 211
E+ ++K +++ H + + S DGTRK L + + IETV IP
Sbjct: 74 EMLNVSKLTREVFKTHFSIAYPEIIEEQISKDGTRKWLLRFPERGAGRPVEIETVYIP-E 132
Query: 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------R 257
GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR
Sbjct: 133 EGRGTLCISSQVGCTLTCSFCHTGTQMLVRNLTAEEILAQLLVARVRLGDFPDKSAPDGA 192
Query: 258 LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQ 317
++ +E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ +
Sbjct: 193 IVPAEKRKITNIVMMGMGEPLYNFEAVKKALLIASDGNGLSMSKRRITLSTSGVVPEIIR 252
Query: 318 FLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 377
E LA+SL+A D +R+ ++PIN+KY L L++ R N ++ FEYVML
Sbjct: 253 AGKEIGVMLAISLHAVRDALRDILVPINKKYPLATLMDACRNYPGLSNARRITFEYVMLK 312
Query: 378 GVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 437
+NDS DDAK+LI L++GIP KINLI FNP GS + + EK+ F +++ AG +
Sbjct: 313 DINDSLDDAKQLIQLLKGIPAKINLIPFNPWPGSDYQCSDWEKIERFADVINQAGYASPI 372
Query: 438 RLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
R+ RG D +AACGQL + + LR E+ Q
Sbjct: 373 RMPRGRDILAACGQLKS----ASKRLRKSERLQ 401
>gi|326405176|ref|YP_004285258.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
multivorum AIU301]
gi|338986497|ref|ZP_08633530.1| Ribosomal RNA large subunit methyltransferase N [Acidiphilium sp.
PM]
gi|325052038|dbj|BAJ82376.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
multivorum AIU301]
gi|338206586|gb|EGO94689.1| Ribosomal RNA large subunit methyltransferase N [Acidiphilium sp.
PM]
Length = 394
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 198/348 (56%), Gaps = 16/348 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S EL + +P +A LW +Y + TD + + K + L+E
Sbjct: 44 LVGLSREELAAAMAEIGEQPFRAKQLWHWIYHQGV----TDFAAMANIAKPLRAKLAERF 99
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFC 232
+ S+D TRK+LF D +ETV IP R VC+SSQVGC ++C+FC
Sbjct: 100 AIGRPEVAADHLSADETRKMLFRFRDHEAVETVYIPDVTEDRGAVCLSSQVGCTLSCRFC 159
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENV 284
+TG L R+L+AAEIV Q A R E S ++ +V MGMGEPL+N ENV
Sbjct: 160 HTGTQRLTRNLSAAEIVGQ-FMAMRDAYGEWPSPKGETPRLLSTIVLMGMGEPLYNYENV 218
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
KA I++ +G+ S R++T+STSG+VP + + E LAVSL+A TD+VR+ I+P+
Sbjct: 219 AKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSLHAVTDDVRDVIVPL 278
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
NRKY + LI R N ++ FEYVML G+NDS DA+RL+ L+ GIP K+NLI
Sbjct: 279 NRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLVELIDGIPAKVNLIP 338
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP GS + ++ + F NI+ AG +R RG D +AACGQL
Sbjct: 339 FNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACGQL 386
>gi|302381137|ref|YP_003816960.1| radical SAM protein [Brevundimonas subvibrioides ATCC 15264]
gi|302191765|gb|ADK99336.1| radical SAM enzyme, Cfr family [Brevundimonas subvibrioides ATCC
15264]
Length = 385
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 188/291 (64%), Gaps = 10/291 (3%)
Query: 186 SSDGTRKILFMLDDGLVIETVVIPCNRGRT-TVCVSSQVGCAMNCQFCYTGRMGLKRHLT 244
S+DGTRK L G+ IETV IP + GR +CVSSQVGC +NC FC+TG L R+LT
Sbjct: 94 SADGTRKWLIRTAPGIEIETVYIP-DVGRAGALCVSSQVGCTLNCTFCHTGTQALVRNLT 152
Query: 245 AAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
AAEIV Q AR L+ E ++N+VFMGMGEPL+N+++V A +I+ +G+
Sbjct: 153 AAEIVAQVQVARDDLNEWPSPKEDRRLSNIVFMGMGEPLYNLDHVSDAIDIISDNEGIAL 212
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R++TVSTSG+VPQL+ + LA+SL+AT D +R+ ++P+N+KY L L++ +R
Sbjct: 213 SRRRITVSTSGVVPQLEPLGTRTQAMLAISLHATNDALRDVLVPLNKKYPLQQLMDGIRA 272
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N +V FEYVML GVNDS D+A+ L+ L++GIP K+NLI FNP G+ + +D
Sbjct: 273 YPGISNARRVTFEYVMLKGVNDSPDEARALVKLIEGIPAKVNLIPFNPWPGTDYE-CSDW 331
Query: 420 KMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG-AIQAPLLRVPEK 468
K IE F IL AG +R RG D +AACGQL + ++A LR E+
Sbjct: 332 KTIERFAAILNKAGYASPIRTPRGRDILAACGQLKSESEKVRASALRKAEQ 382
>gi|359783459|ref|ZP_09286673.1| hypothetical protein PPL19_20431 [Pseudomonas psychrotolerans L19]
gi|359368676|gb|EHK69253.1| hypothetical protein PPL19_20431 [Pseudomonas psychrotolerans L19]
Length = 379
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 204/349 (58%), Gaps = 14/349 (4%)
Query: 112 SRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+V L G++ +L+ + S FR GQ +M W +G D + D + L K K+
Sbjct: 6 DKVNLLGLTQPQLESFFESIGEKRFRAGQ-VMKWIHHFGIDDF----DAMSNLGKALKEK 60
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE R + S DGTRK + + G +ETV IP N GR T+CVSSQ GCA++
Sbjct: 61 LKAAAEIRGPEIVSEDISRDGTRKWVIRVASGSCVETVYIPQN-GRGTLCVSSQAGCALD 119
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENV 284
C FC TG+ G +LTAAE++ Q A + S +ITNVV MGMGEPL N +NV
Sbjct: 120 CSFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPAKIDRAITNVVMMGMGEPLLNFDNV 179
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + G S RKVT+STSG+VP +++ + + +LA+SL+A DE+RN ++PI
Sbjct: 180 VAAMRIMMDDLGYGISKRKVTLSTSGVVPMIEELAKQIDVSLALSLHAPNDELRNELVPI 239
Query: 345 NRKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
NRKY L +L++ + + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 240 NRKYPLAMLLDACQRYIGQLGEKRVLTIEYTLLKDVNDLPEHALQMIELLRNVPCKINLI 299
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + + F+ +L AG V +R +RGDD AACGQL
Sbjct: 300 PFNPFPHSGYERPSKNATRRFQELLQQAGFNVTVRTTRGDDIDAACGQL 348
>gi|148261683|ref|YP_001235810.1| radical SAM protein [Acidiphilium cryptum JF-5]
gi|205829703|sp|A5G209.1|RLMN_ACICJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146403364|gb|ABQ31891.1| 23S rRNA m(2)A-2503 methyltransferase [Acidiphilium cryptum JF-5]
Length = 390
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 198/348 (56%), Gaps = 16/348 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S EL + +P +A LW +Y + TD + + K + L+E
Sbjct: 40 LVGLSREELAAAMAEIGEQPFRAKQLWHWIYHQGV----TDFAAMANIAKPLRAKLAERF 95
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFC 232
+ S+D TRK+LF D +ETV IP R VC+SSQVGC ++C+FC
Sbjct: 96 AIGRPEVAADHLSADETRKMLFRFRDHEAVETVYIPDVTEDRGAVCLSSQVGCTLSCRFC 155
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENV 284
+TG L R+L+AAEIV Q A R E S ++ +V MGMGEPL+N ENV
Sbjct: 156 HTGTQRLTRNLSAAEIVGQ-FMAMRDAYGEWPSPKGETPRLLSTIVLMGMGEPLYNYENV 214
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
KA I++ +G+ S R++T+STSG+VP + + E LAVSL+A TD+VR+ I+P+
Sbjct: 215 AKAMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSLHAVTDDVRDVIVPL 274
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
NRKY + LI R N ++ FEYVML G+NDS DA+RL+ L+ GIP K+NLI
Sbjct: 275 NRKYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLVELIDGIPAKVNLIP 334
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP GS + ++ + F NI+ AG +R RG D +AACGQL
Sbjct: 335 FNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACGQL 382
>gi|423713313|ref|ZP_17687573.1| ribosomal RNA large subunit methyltransferase N [Bartonella
vinsonii subsp. arupensis OK-94-513]
gi|395423354|gb|EJF89549.1| ribosomal RNA large subunit methyltransferase N [Bartonella
vinsonii subsp. arupensis OK-94-513]
Length = 411
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 154/393 (39%), Positives = 215/393 (54%), Gaps = 30/393 (7%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
V+ ++ S++ L G+S E+ +++ Q M LW LY + DE+ +
Sbjct: 21 VIVEESSKLSLIGLSQDEMMHALKTIGVPERQTRMRVRQLWHWLYVRGVSNF--DEMLNI 78
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTT 216
+K ++ML H + S DGTRK L + IETV IP GR T
Sbjct: 79 SKSMQEMLKSHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIP-EEGRGT 137
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------------E 262
+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L E
Sbjct: 138 LCLSSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPVE 197
Query: 263 VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES 322
ITN+V MGMGEPL+N E V KA I +GL S R++T+STSG+VP + + E
Sbjct: 198 GRKITNIVMMGMGEPLYNFEAVKKALLIASDGEGLSLSKRRITLSTSGVVPGIIRTGEEI 257
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 382
LA+SL+A D +R+ ++PIN+KY L LL++ R N ++ FEYVML +NDS
Sbjct: 258 GVMLAISLHAVHDTLRDMLVPINKKYPLALLMDACRNYPGLSNAKRITFEYVMLKDINDS 317
Query: 383 FDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ RG
Sbjct: 318 LDDAKRLIQLLEGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNRAGYASPIRIPRG 377
Query: 443 DDQMAACGQLGNPGAIQAPLLRVPEKFQTAINA 475
D +AACGQL + + LR E+FQ A
Sbjct: 378 RDILAACGQLKS----ASERLRKSERFQLECGA 406
>gi|257453867|ref|ZP_05619145.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
gi|257448794|gb|EEV23759.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
Length = 399
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 211/352 (59%), Gaps = 19/352 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L GMS EL Q+ +P +A + K +Y + TD ++ L+K ++ L E A
Sbjct: 24 LLGMSKAELGQFFADLGEKPFRATQVMKWIYQFGV----TDFYQMTNLSKKLQETLDEVA 79
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR----GRTTVCVSSQVGCAMNC 229
++K S DGTRK +F + G ++ETV+IP + GR T+C+SSQVGCA++C
Sbjct: 80 TVSPPTVKFKQFSEDGTRKWVFEVAGGSLVETVLIPADDNKQFGRKTLCISSQVGCALDC 139
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMGMGEPLHNVEN 283
FC TG+ G +R L+ +EI+ Q A + V +TNVV MGMGEPL N E
Sbjct: 140 SFCSTGKQGFERDLSPSEIIGQLWVANQSYMENVPVTERENRVTNVVMMGMGEPLLNYEP 199
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ + ++M+ + G S R+VT+STSG+VP++ + + + ALA+SL+A DE+RN ++P
Sbjct: 200 VVASMSLMLDDFGFGLSKRRVTLSTSGIVPKMYELAKDIDVALAISLHAPNDELRNELVP 259
Query: 344 INRKYKLGLLIETLREELHFKN---NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
IN+KY L LI + ++ +N V EYVML VND+ + A++L+ L++ +PCKI
Sbjct: 260 INKKYPLKELIAAAKSYVYDENPRHKKHVTIEYVMLKDVNDTDEHARQLVNLLKDLPCKI 319
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP + + +++ ++ F NIL AG +R +RGDD AACGQL
Sbjct: 320 NLIPFNPFPHAPYGRSSNNRIHAFSNILNQAGFVCTIRQTRGDDIDAACGQL 371
>gi|421854121|ref|ZP_16286749.1| iron-sulfur cluster redox enzyme [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371477597|dbj|GAB31952.1| iron-sulfur cluster redox enzyme [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 408
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 199/354 (56%), Gaps = 28/354 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S EL + +P + LW +Y + TD + + K ++ L+E
Sbjct: 50 LVGLSRDELTDILTEIGEKPFRTKQLWHWIYHQGV----TDFSRMSTIAKPLQQKLAERF 105
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFC 232
+ TSSD TRK LF DG ETV IP R R VC+SSQVGC ++C FC
Sbjct: 106 IIGRPEAATVQTSSDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFC 165
Query: 233 YTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPL 278
+TG L R+L AAEIV Q + AR RLLS+ +V MGMGEPL
Sbjct: 166 HTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKGETPRLLST-------IVLMGMGEPL 218
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
+N ENV KA I++ +G+ S R++T+STSG+VP + + +E LAVSL+A +++R
Sbjct: 219 YNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLR 278
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
+ I+P+NRKY + ++ R N ++ FEY+ML GVNDS DA+ L+ L+ GIP
Sbjct: 279 DEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLISGIPA 338
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
K+NLI FNP GS + P+T E+ F I+ AG +R RG D +AACGQL
Sbjct: 339 KVNLIPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACGQL 392
>gi|357403874|ref|YP_004915798.1| Fe-S-cluster redox protein [Methylomicrobium alcaliphilum 20Z]
gi|351716539|emb|CCE22199.1| putative Fe-S-cluster redox enzyme [Methylomicrobium alcaliphilum
20Z]
Length = 370
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 201/350 (57%), Gaps = 4/350 (1%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N + P K +R L L+ + +P +A L K +Y + + ++ L+
Sbjct: 2 NFVLAPAKLNRTNLLDFDRKGLEAFFVEIGEKPFRATQLLKWVYQEGVEDF--SQMSNLS 59
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L+E + +SDGT K + G IETV IP GR T+CVSSQ
Sbjct: 60 KALRTQLAEQCSLDTPEIVLEQIASDGTCKWVLETSCGNRIETVFIP-EEGRGTLCVSSQ 118
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE 282
+GCA+ C FC T + G R+LT AEI+ Q A++ L S ITNVV MGMGEPL N +
Sbjct: 119 IGCALACTFCSTAQQGFNRNLTTAEIIGQLFAAQKRLGS-AQKITNVVMMGMGEPLLNFD 177
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A N+M+ + S R+VT+STSG+VP + + + +LAVSL+A TDE+RN ++
Sbjct: 178 NVVAAMNLMMDDFAYGLSKRRVTISTSGIVPAMYRLTEVCDVSLAVSLHAVTDELRNELV 237
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L L+ R+ + ++ FEYVML G+NDS DAK ++ L++ +P KINL
Sbjct: 238 PINKKYPLKELLAACRDNVIRSPRRRITFEYVMLDGINDSVQDAKAMVKLLKTVPSKINL 297
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP S + ++ + + FR +L AG +R +RGDD AACGQL
Sbjct: 298 IPFNPFPNSSYRCSSSDAIDRFRAVLHNAGMVTTIRKTRGDDIDAACGQL 347
>gi|350552153|ref|ZP_08921359.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
gi|349795018|gb|EGZ48824.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
Length = 390
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 203/345 (58%), Gaps = 11/345 (3%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQAL--MLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
V L GM+ EL + +S +P +A+ M W G D A TD L K + L +
Sbjct: 20 VNLLGMTQAELGAFFQSLEEKPFRAVQVMKWIHQRGCDDPAQMTD----LAKTLRARLPQ 75
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
A RA + T+ DGTRK L L DG +E V IP +GR T+CVS+QVGCA+ C F
Sbjct: 76 VACIRAPEVLLAQTARDGTRKWLLGLADGNAVEMVFIP-EQGRGTLCVSTQVGCALQCSF 134
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAA 288
C T R G R+L++AEI+ Q A R+L E G I+NVV MGMGEPL N E + A
Sbjct: 135 CATARQGFNRNLSSAEIIAQLWLASRVLQPEGGQSRVISNVVLMGMGEPLLNFEASVAAM 194
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+M+H+ S R+VTVST+G+VP + + + + +LA+SL+A D +R+ ++P+NRKY
Sbjct: 195 ELMLHDHAYGLSKRRVTVSTAGVVPAIDRLRDTLDVSLAISLHAPDDALRDQLVPLNRKY 254
Query: 349 KL-GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
+ LL R +++ ++ EY ++ GVND+ A+ L L++ +PCK+NLI FNP
Sbjct: 255 PIRELLAACKRYVREGRHHQRITVEYALINGVNDAPQQAQALARLLRDLPCKLNLIPFNP 314
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + T+ + F+++L AG T +R +RGD+ AACGQL
Sbjct: 315 FAQSPYAAPTEAAVARFQDVLTQAGYTTVIRRTRGDEIDAACGQL 359
>gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT]
gi|123078840|sp|Q1H0U6.1|RLMN_METFK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus
KT]
Length = 362
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/343 (41%), Positives = 198/343 (57%), Gaps = 11/343 (3%)
Query: 120 SFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALS 179
+ E Q + FR Q +M W +G + TD + K ++ L++ A S
Sbjct: 12 ALAEYFQGIGEKPFRAKQ-MMRWMHHFGVSDFGEMTD----IAKALREKLAKEAVVAPPS 66
Query: 180 LKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL 239
+ S DGTRK L + G +ETV IP + R T+CVSSQVGCA++C FC TGR G
Sbjct: 67 VHLEQISEDGTRKWLIDVGAGNGVETVFIPED-DRGTLCVSSQVGCALDCTFCSTGRQGF 125
Query: 240 KRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQG 296
R+L+ +EI+ Q A + L + I+NVV MGMGEPL N +NV+ A NIM+ +
Sbjct: 126 NRNLSVSEIIGQLWVANKALGRDPKGDRIISNVVMMGMGEPLANFDNVVAAMNIMLDDSA 185
Query: 297 LHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356
S R+VT+STSG+VP + + E ALAVSL+A D +R+ I+PINRKY + L+
Sbjct: 186 YGLSRRRVTLSTSGMVPAMDRLREECPVALAVSLHAPNDALRDEIVPINRKYPIAQLMAA 245
Query: 357 LREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPT 416
+ L V FEYVML GVND+ + A++L+ +VQ +PCK NLI FNP S + +
Sbjct: 246 CQRYLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIVQDVPCKFNLIPFNPFPNSGYDTS 305
Query: 417 TDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
+ + FR+IL AG V R +RG+D AACGQL G +Q
Sbjct: 306 KPDNIRRFRDILMQAGYVVTTRKTRGEDIDAACGQLA--GKVQ 346
>gi|359788523|ref|ZP_09291497.1| radical SAM enzyme, Cfr family protein [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359255612|gb|EHK58514.1| radical SAM enzyme, Cfr family protein [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 410
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 207/370 (55%), Gaps = 29/370 (7%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
V+P KGS L G+S EL + + S QA M LW LY + E+ +
Sbjct: 21 VMPAKGS---LIGLSRAELGEALISAGVPERQAKMRVQQLWHWLYVRGVSDFS--EMLNI 75
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTT 216
+KD + L +H + + S+DGTRK LF + IETV IP GR T
Sbjct: 76 SKDLRATLEQHFTIARPEIVEEQISNDGTRKWLFRFPPRGAGRPVEIETVYIP-EEGRGT 134
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------------SE 262
+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L +E
Sbjct: 135 LCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPERGTPDGAIVPAE 194
Query: 263 VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES 322
+TNVV MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + +E
Sbjct: 195 GRKVTNVVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGDEI 254
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 382
LA+SL+AT D++R+ ++PIN+KY L LI R N ++ FEYVML VNDS
Sbjct: 255 GVMLAISLHATNDDLRDLLVPINKKYPLSELIAACRAYPGLSNAKRITFEYVMLKDVNDS 314
Query: 383 FDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
+DAK LI L++GIP KINLI FNP G+ + + E + +F + + AG +R RG
Sbjct: 315 IEDAKALIKLLRGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRG 374
Query: 443 DDQMAACGQL 452
D +AACGQL
Sbjct: 375 RDILAACGQL 384
>gi|393720492|ref|ZP_10340419.1| radical SAM protein [Sphingomonas echinoides ATCC 14820]
Length = 394
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/383 (38%), Positives = 220/383 (57%), Gaps = 20/383 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDI--WAHCTDELE 159
++P+ R+ L G+S +L+ + + P QA + LW +Y + +A TD
Sbjct: 16 LVPRSDGRIDLLGLSKADLRMALETSQLDPKQAKLRAKQLWHWIYNRGVTDFALMTD--- 72
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
++K + L + + + S+DGTRK L DDG E V IP + R T+CV
Sbjct: 73 -ISKAMQPWLEQRFTISRPQVVEAQVSTDGTRKWLLRTDDGNDYEMVFIP-DADRGTLCV 130
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGM 274
SSQVGC +NC+FC+TG M L R+LT EIV Q + AR L E +TN+V MGM
Sbjct: 131 SSQVGCTLNCRFCHTGTMRLVRNLTPGEIVGQVMLARDALGEWPSQPEGRMLTNIVMMGM 190
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATT 334
GEPL+N +NV I++ G+ S R++T+STSG+VP + + E + LAVSL+A T
Sbjct: 191 GEPLYNFDNVRDGLKIVMDGDGIGLSRRRITLSTSGVVPLMARAGEEISVNLAVSLHAVT 250
Query: 335 DEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+E+R+ I+PINRKYKL +++ + N ++ FEYVML NDS DA+ L+ L++
Sbjct: 251 NEIRDEIVPINRKYKLEQVLQACADYPGANNARRITFEYVMLKDKNDSDADARELVRLLK 310
Query: 395 --GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+P K+NLI FNP G+ + +T E++ F NI+ AG + +R RG D AACGQL
Sbjct: 311 KYDLPAKVNLIPFNPWPGAPYECSTPERIKAFSNIVFDAGISAPVRTPRGRDIDAACGQL 370
Query: 453 --GNPGAIQAPLLRVPEKFQTAI 473
+ +A L R+ E+ Q A+
Sbjct: 371 KTASEKKTRAELDRLAEEKQAAL 393
>gi|254418192|ref|ZP_05031916.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3]
gi|196184369|gb|EDX79345.1| radical SAM enzyme, Cfr family [Brevundimonas sp. BAL3]
Length = 390
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/358 (41%), Positives = 208/358 (58%), Gaps = 18/358 (5%)
Query: 108 PKKGSRVLLKGMSFTELQQ-WVRSHAFRPGQALMLWKRLYGDDIWAHCT-----DELEGL 161
P + V L G++ L+Q + ++ P +A M +++ W H + +
Sbjct: 14 PALKAPVNLSGLTRAGLRQALIDANVCPPEKAKMRASQVWS---WIHHYGVTEFSAMSNV 70
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT-TVCVS 220
KD + L+EH + + S DGTRK L G+ IETV IP + GR +CVS
Sbjct: 71 AKDMQAKLAEHFTLARPEIVERQVSKDGTRKWLIRTAPGIEIETVYIP-DVGRAGALCVS 129
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMG 275
SQVGC +NC FC+TG L R+LTAAEIV Q AR L E ++N+VFMGMG
Sbjct: 130 SQVGCTLNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLEEWPSPKEDRRLSNIVFMGMG 189
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL+N+++V A +I+ +G+ S R++TVSTSG+ PQL + LA+SL+AT D
Sbjct: 190 EPLYNLDHVADAIDIISDNEGIALSRRRITVSTSGVAPQLDALGTRTAAMLAISLHATND 249
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++P+N+KY L L+ +R N +V FEYVML GVNDS ++A+ L+ L++G
Sbjct: 250 ALRDVLVPLNKKYPLDQLMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALLKLIEG 309
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
IP KINLI FNP G ++ +D K IE F IL AG +R RG D +AACGQL
Sbjct: 310 IPAKINLIPFNPWPGVEYE-CSDWKTIERFAAILNKAGYASPIRTPRGRDILAACGQL 366
>gi|390951014|ref|YP_006414773.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
gi|390427583|gb|AFL74648.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
Length = 365
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/297 (45%), Positives = 180/297 (60%), Gaps = 4/297 (1%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D + L++ ++ L E E R + + S DGT K + L DG IETV IP R R+
Sbjct: 48 DAMTDLSRSLRETLRETVEIRLPRIVEAHPSEDGTIKWIMELHDGQRIETVFIPEGR-RS 106
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG 275
T+CVSSQVGCA+ C FC T R G R+L +EI+ Q A R L TNVV MGMG
Sbjct: 107 TICVSSQVGCALECAFCATARQGFNRNLAVSEIIGQVWHAARQLDK---PPTNVVMMGMG 163
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N E+V+KA +IM + + ++VT+STSG+VP + + S+ +LAVSL+A D
Sbjct: 164 EPLANFESVVKAMDIMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSLAVSLHAPND 223
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++PINRKY L L+ + + KV +EYVML G+NDS AK+LI L++G
Sbjct: 224 ALRDQLVPINRKYPLAELLPACKAYIGQDKRRKVTWEYVMLDGINDSLAHAKQLIRLLEG 283
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
IP K+NLI FNP GS F + E++ FR L AG R +RGD+ AACGQL
Sbjct: 284 IPSKLNLIPFNPFAGSDFGTSPPERIEAFRLRLTRAGIFAMTRKTRGDEIAAACGQL 340
>gi|86747220|ref|YP_483716.1| hypothetical protein RPB_0093 [Rhodopseudomonas palustris HaA2]
gi|123293381|sp|Q2J405.1|RLMN_RHOP2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|86570248|gb|ABD04805.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 399
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 208/365 (56%), Gaps = 24/365 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQ----ALMLWKRLYGDDIWAHCTDELEGL 161
V P K S L G+S EL + + + P Q A LW +Y A E+ +
Sbjct: 19 VPPAKPS---LIGLSRAELAERLGAIGVAPAQRKMRAQQLWHWMYVRG--ARDFAEMTNV 73
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRT 215
+K+ + L+EH + S+DGTRK L L G +E V IP R
Sbjct: 74 SKEMRATLAEHCTVDRPEVVAEQISADGTRKWLLRLPSGDDVQKAHEVECVYIP-ETDRG 132
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------IT 267
T+CVSSQVGC +NC FC+TG L R+LTA EIV Q + AR L + +T
Sbjct: 133 TLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWIDRETPNGNRLVT 192
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
NVV MGMGEPL+N E V A I+ +G+ S R+VT+STSG+VP + + +E LA
Sbjct: 193 NVVMMGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIARTGDEIGVMLA 252
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A DE+R+ ++P+NRKY L L++ R+ N ++ FEYVML GVNDS DDA+
Sbjct: 253 ISLHAVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAR 312
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RL+ L++GIP KINLI FNP GS++ + +++ +F + AG + +R RG D +A
Sbjct: 313 RLVQLLKGIPAKINLIPFNPWPGSKYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILA 372
Query: 448 ACGQL 452
ACGQL
Sbjct: 373 ACGQL 377
>gi|313201450|ref|YP_004040108.1| radical sam enzyme, cfr family [Methylovorus sp. MP688]
gi|312440766|gb|ADQ84872.1| radical SAM enzyme, Cfr family [Methylovorus sp. MP688]
Length = 367
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/330 (43%), Positives = 189/330 (57%), Gaps = 11/330 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G H D++ + K + L + AE +K S DGTRK
Sbjct: 25 FRAKQ-LMRWMHHFG----VHDFDQMTDIAKSLRDKLKDQAEITPPGIKLEQISEDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L G +ETV IP R T+CVSSQVGCA+ C FC TGR G R+L+ +EI+ Q
Sbjct: 80 WLIDAGTGNGVETVFIP-EAERGTLCVSSQVGCALECTFCSTGRQGFNRNLSVSEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
A + L + I+NVV MGMGEPL N +NV+ A NIM+ + S R+VTVSTS
Sbjct: 139 WVANKALGRDPKGDRIISNVVMMGMGEPLANFDNVVTALNIMLDDSAYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VP + + ALAVSL+A D +R+ I+PIN+KY + L+ + L V
Sbjct: 199 GMVPAMDRLREACPVALAVSLHAPNDALRDVIVPINKKYPIKELMAACQRYLEKAPRDFV 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVNDS + A++L+ +V+ +PCK NLI FNP S + + E + FR++L
Sbjct: 259 TFEYVMLDGVNDSVEHARQLLDIVRDVPCKFNLIPFNPFPNSGYDTSKPEAIRRFRDVLM 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
A V R +RGDD AACGQL G +Q
Sbjct: 319 QADYVVTTRKTRGDDIDAACGQLA--GKVQ 346
>gi|453330449|dbj|GAC87677.1| Fe-S-cluster redox protein [Gluconobacter thailandicus NBRC 3255]
Length = 403
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 206/352 (58%), Gaps = 11/352 (3%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+ G R L+ GMS EL + +P +A +W +Y A ++ + K +
Sbjct: 44 EDGRRDLV-GMSREELATLMTEIGEKPFRAKQIWHWIYHQG--ATDFSKMSTIAKPLQAK 100
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAM 227
L+EH + TS D TRK LF DG ETV IP + R VC+SSQVGC +
Sbjct: 101 LAEHFIVGRPTTTTEQTSVDATRKFLFRFRDGQEAETVYIPDRKEDRGAVCISSQVGCTL 160
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL------SSEVGS-ITNVVFMGMGEPLHN 280
+C FC+TG L R+L AEIV Q + AR S+++ ++ +V MGMGEPL+N
Sbjct: 161 SCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYKEWPSPSADMPRFLSTIVLMGMGEPLYN 220
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+NV KA I++ +G+ S R++T+STSG+VP + + +E LA+SL+A T+E+R+
Sbjct: 221 YDNVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNELRDQ 280
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
I+P+NRKY + L+ R N+ ++ FEY+ML GVNDS DA+ L+ L++ +P K+
Sbjct: 281 IVPLNRKYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIKDMPAKV 340
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS F P+T E++ +F I+ AG +R RG D +AACGQL
Sbjct: 341 NLIPFNPWPGSDFKPSTREQLAKFAKIVMDAGFASPIRTPRGQDILAACGQL 392
>gi|357032441|ref|ZP_09094379.1| putative Fe-S-cluster redox protein [Gluconobacter morbifer G707]
gi|356413978|gb|EHH67627.1| putative Fe-S-cluster redox protein [Gluconobacter morbifer G707]
Length = 403
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 205/352 (58%), Gaps = 11/352 (3%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+ G R L+ G++ EL + +P +A LW +Y A ++ + K +
Sbjct: 44 EDGRRDLV-GLNREELAALMTEIGEKPFRAKQLWHWIYHQG--ATDFSKMSTIAKPMQAK 100
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAM 227
L+EH + TS D TRK LF DG ETV IP R R VC+SSQVGC +
Sbjct: 101 LAEHFIVGRPTTSTQQTSVDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTL 160
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---SEVGS----ITNVVFMGMGEPLHN 280
+C FC+TG L R+L AEIV Q + AR S G ++ +V MGMGEPL+N
Sbjct: 161 SCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYGEWPSPTGDTPRLLSTIVLMGMGEPLYN 220
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
ENV KA I++ G+ S R++T+STSG+VP + + +E LA+SL+A T+E+R+
Sbjct: 221 YENVAKAMKIVMDGDGIALSRRRITLSTSGVVPMMDRCGDELGVNLAISLHAVTNELRDQ 280
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
I+P+NRKY + L+ + N+ ++ FEY+ML G+NDS DA+ L+ L++ +P K+
Sbjct: 281 IVPLNRKYPIEELMAACKRYPAASNSRRITFEYIMLRGINDSEADARELVRLIRDLPAKV 340
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS F P+T E++ +F NI+ AG + +R RG D +AACGQL
Sbjct: 341 NLIPFNPWPGSDFRPSTKEQLNKFANIVMDAGFSSPIRTPRGRDILAACGQL 392
>gi|347759882|ref|YP_004867443.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter xylinus
NBRC 3288]
gi|347578852|dbj|BAK83073.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter xylinus
NBRC 3288]
Length = 412
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 199/352 (56%), Gaps = 24/352 (6%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
L G+S EL + +P + LW +Y A + + + ++ L+E
Sbjct: 49 LVGLSREELTDIMVEIGEKPFRTKQLWHWIYHQG--ATDFSRMSSIARPLQEKLAERFVV 106
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFCYT 234
+ TS D TRK LF DG ETV IP + R VC+SSQVGC ++C FC+T
Sbjct: 107 GRPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPDRQEDRGAVCISSQVGCTLSCTFCHT 166
Query: 235 GRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHN 280
G L R+L AAEIV Q + AR RLLS+ +V MGMGEPL+N
Sbjct: 167 GTQALVRNLGAAEIVGQFMAARDSYGEWPSPKGDTPRLLST-------IVLMGMGEPLYN 219
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+NV KA I++ +G+ S R++T+STSG+VP + Q E LAVSL+A D++R+
Sbjct: 220 YDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHAVRDDLRDE 279
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
I+P+NRKY + +I R N ++ FEY+ML G+NDS DA+ L+ L+ GIP K+
Sbjct: 280 IVPLNRKYPIKEVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLISGIPAKV 339
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS + P+T E++ +F NI+ AG +R+ RG D +AACGQL
Sbjct: 340 NLIPFNPWPGSSYRPSTREQLEKFANIVMDAGFASPIRMPRGRDILAACGQL 391
>gi|258542583|ref|YP_003188016.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01]
gi|384042504|ref|YP_005481248.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-12]
gi|384051021|ref|YP_005478084.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-03]
gi|384054129|ref|YP_005487223.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-07]
gi|384057363|ref|YP_005490030.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-22]
gi|384060004|ref|YP_005499132.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-26]
gi|384063296|ref|YP_005483938.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-32]
gi|384119306|ref|YP_005501930.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|421849418|ref|ZP_16282398.1| iron-sulfur cluster redox enzyme [Acetobacter pasteurianus NBRC
101655]
gi|256633661|dbj|BAH99636.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01]
gi|256636720|dbj|BAI02689.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-03]
gi|256639773|dbj|BAI05735.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-07]
gi|256642829|dbj|BAI08784.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-22]
gi|256645884|dbj|BAI11832.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-26]
gi|256648937|dbj|BAI14878.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-32]
gi|256651924|dbj|BAI17858.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|256654981|dbj|BAI20908.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-12]
gi|371459741|dbj|GAB27601.1| iron-sulfur cluster redox enzyme [Acetobacter pasteurianus NBRC
101655]
Length = 408
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 199/354 (56%), Gaps = 28/354 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S EL + +P + LW +Y + TD + + K ++ L+E
Sbjct: 50 LVGLSRDELTDILTEIGEKPFRTKQLWHWIYHQGV----TDFSRMSTIAKPLQQKLAERF 105
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFC 232
+ TSSD TRK LF DG ETV IP R R VC+SSQVGC ++C FC
Sbjct: 106 IIGRPEAATVQTSSDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFC 165
Query: 233 YTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPL 278
+TG L R+L AAEIV Q + AR RLLS+ +V MGMGEPL
Sbjct: 166 HTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKGETPRLLST-------IVLMGMGEPL 218
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
+N ENV KA I++ +G+ S R++T+STSG+VP + + +E LAVSL+A +++R
Sbjct: 219 YNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLR 278
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
+ I+P+NRKY + ++ R N ++ FEY+ML G+NDS DA+ L+ L+ GIP
Sbjct: 279 DEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLISGIPA 338
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
K+NLI FNP GS + P+T E+ F I+ AG +R RG D +AACGQL
Sbjct: 339 KVNLIPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACGQL 392
>gi|319403510|emb|CBI77089.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 409
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/371 (40%), Positives = 206/371 (55%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
N + K S++ L G+S E+ Q +++ Q M +W LY + +H DE+
Sbjct: 20 NTIVTKQSKLPLIGLSHDEIAQALQAIGVPEHQTQMRVRQIWHWLYVRGV-SHF-DEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG-----LVIETVVIPCNRGRT 215
++K ++ML EH + S DGTRK L + IETV IP R
Sbjct: 78 ISKPMREMLKEHFSIARPEIVAEQISQDGTRKWLLRFPASGAGKPVEIETVYIP-EEARG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LT EI+ Q + AR L
Sbjct: 137 TLCISSQVGCTLTCSFCHTGTQKLVRNLTVEEILVQLLVARDCLGDFPDKKTPDGAIIPI 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITNVV MGMGEPL+N E V KA I GL S R++T+STSG++P + + E
Sbjct: 197 EGRKITNVVMMGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL+E R N ++ FEYVML VND
Sbjct: 257 IGVMLAISLHAVHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDA++LI L++GIP KINLI FNP GS + + E++ F +I+ AG +R+ R
Sbjct: 317 SLDDARKLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIINKAGYASPIRMPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|410943443|ref|ZP_11375184.1| Fe-S-cluster redox protein [Gluconobacter frateurii NBRC 101659]
Length = 403
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 206/352 (58%), Gaps = 11/352 (3%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+ G R L+ GMS EL + +P +A +W +Y A ++ + K +
Sbjct: 44 EDGRRDLV-GMSREELATLMTEIGEKPFRAKQIWHWIYHQG--ATDFSKMSTIAKPLQAK 100
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAM 227
L+EH + TS D TRK LF DG ETV IP + R VC+SSQVGC +
Sbjct: 101 LAEHFIVGRPTTTTEQTSVDATRKFLFRFRDGQEAETVYIPDRKEDRGAVCISSQVGCTL 160
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL------SSEVGS-ITNVVFMGMGEPLHN 280
+C FC+TG L R+L AEIV Q + AR S+++ ++ +V MGMGEPL+N
Sbjct: 161 SCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYKEWPSPSADMPRFLSTIVLMGMGEPLYN 220
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+NV KA I++ +G+ S R++T+STSG+VP + + +E LA+SL+A T+++R+
Sbjct: 221 YDNVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNDLRDQ 280
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
I+P+NRKY + L+ R N+ ++ FEY+ML GVNDS DA+ L+ L++ IP K+
Sbjct: 281 IVPLNRKYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIKDIPAKV 340
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS F P+T E++ +F I+ AG +R RG D +AACGQL
Sbjct: 341 NLIPFNPWPGSDFKPSTREQLAKFAKIVMDAGFASPIRTPRGQDILAACGQL 392
>gi|387773831|ref|ZP_10129116.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parahaemolyticus
HK385]
gi|386903652|gb|EIJ68459.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parahaemolyticus
HK385]
Length = 386
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 215/366 (58%), Gaps = 14/366 (3%)
Query: 96 SDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAH 153
SD NI V K +V L M+ ++++++ S +P +A LM W +G+D +
Sbjct: 2 SDQIQATNIAVAHPKSEKVNLMNMTRPQMREFLASLGEKPFRADQLMKWIYHFGEDNF-- 59
Query: 154 CTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG 213
D + +NK ++ L + AE +A + S+DGT K + + IETV IP
Sbjct: 60 --DNMSNINKILREKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGEQQ-IETVYIP-EAD 115
Query: 214 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNV 269
R T+CVSSQVGCA+ C FC T + G R+L AEI+ Q A +++ + V ITNV
Sbjct: 116 RATLCVSSQVGCALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGVRPITNV 175
Query: 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVS 329
V MGMGEPL NV NV+ A IM+ + S R+VT+STSG+VP L ++ + ALA+S
Sbjct: 176 VMMGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDALRDKIDVALAIS 235
Query: 330 LNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
L+A DE+R+ I+PIN+KY + +LI+++ E+ N+ KV EYVML VND D A
Sbjct: 236 LHAPNDEIRDEIVPINKKYNMEMLIDSVNRYLEVSNANHGKVTIEYVMLDHVNDEVDHAH 295
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD A
Sbjct: 296 QLAKVLKNTPCKINLIPWNPFPEAPYAKSSNSRVDRFQKALMEYGFTVTIRKTRGDDIDA 355
Query: 448 ACGQLG 453
ACGQL
Sbjct: 356 ACGQLA 361
>gi|399908780|ref|ZP_10777332.1| hypothetical protein HKM-1_04906 [Halomonas sp. KM-1]
Length = 387
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 215/351 (61%), Gaps = 14/351 (3%)
Query: 111 GSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
R L G++ E++ + S FR Q +M W G D + T+ L+K ++
Sbjct: 19 AQRTNLLGLTREEMEAFFLSIGEKKFRAAQ-VMKWIHHDGCDDFEAMTN----LSKALRQ 73
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG-RTTVCVSSQVGCA 226
L+E AE R + TSSDGTRK + ++DG +ETV+IP + G R T+CVSSQVGC+
Sbjct: 74 RLAEVAEIRGPGVVYEGTSSDGTRKWVLEVEDGSYVETVLIPADNGKRRTLCVSSQVGCS 133
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
++C FC TG+ G +R+LTAAEI+ Q A+R + + +TNVV MGMGEPL N +
Sbjct: 134 LDCSFCSTGKQGFQRNLTAAEIIGQVWVAQRSVGPRKDTANRPVTNVVMMGMGEPLMNYD 193
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A +M+ + G S R+VT+STSG+VP L + +E + +LA+SL+A TDE+R+ ++
Sbjct: 194 NVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPMLDRLGDELDVSLAISLHAATDELRSELV 253
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
P+NRKY + L++ + L ++ +++ EY ++ VND + A++L L++ +PCKIN
Sbjct: 254 PLNRKYNIRTLLDACQRYLAKCDDTRMITIEYTVIKDVNDQQEHAQQLAELLRELPCKIN 313
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
LI FNP S + + +++ F+ L G T +R +RG D AACGQL
Sbjct: 314 LIPFNPFPHSGYEKPSRNQVMRFQQWLYELGYTAPIRTTRGGDIDAACGQL 364
>gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium]
gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium]
gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium]
Length = 364
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 189/324 (58%), Gaps = 9/324 (2%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR GQ L W +G + +A T+ L+K ++ L++ ++ A ++ +SDGTRK
Sbjct: 30 FRAGQVLQ-WLHAHGCEDFAAMTN----LSKALRERLAQESQIAAPQVQADHLASDGTRK 84
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
LF L G IETV IP R R T+CVSSQVGC +NC FC T R G R+L EIV Q
Sbjct: 85 WLFQLPGGSAIETVYIPETR-RGTLCVSSQVGCQLNCSFCQTARQGFNRNLGVDEIVGQI 143
Query: 253 VFARRLLSSEVG---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
A RLL ITNVVFMGMGEPL N +NV+ A +M+ + S R+VTVSTS
Sbjct: 144 WAASRLLPPHPAREKPITNVVFMGMGEPLLNFDNVVAAIRVMLDDLAYGLSWRRVTVSTS 203
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VP + + E ALAVSL+A D +R ++P+NR+Y + +L++ R + ++
Sbjct: 204 GVVPMIDRLREECPVALAVSLHAPDDALRAELVPLNRRYPIDVLLDACRRYVAGDQRRRI 263
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEY +LAGVND AK L L+ +P K+NLI +NP G + + + + +FR+ L
Sbjct: 264 TFEYTLLAGVNDHPGQAKALAKLLARVPSKVNLIPYNPVAGLPYATSPPQAVAQFRDELL 323
Query: 430 GAGCTVFLRLSRGDDQMAACGQLG 453
G +R +RGDD ACGQL
Sbjct: 324 RHGLVATVRKTRGDDIAGACGQLA 347
>gi|381393545|ref|ZP_09919266.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
gi|379330761|dbj|GAB54399.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
Length = 388
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 199/336 (59%), Gaps = 11/336 (3%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT-DELEGLNKDFKKMLSEHAEFRALSLKD 182
L++++ S +P + L K +Y + C ++ LNKD + L E RA + +
Sbjct: 30 LREYLSSIGEKPFRTEQLMKWIYQE---GQCDFTKMTNLNKDLRAKLIALCEVRAPEISE 86
Query: 183 ILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
+SDGT K MLD G +ETV IP R T+CVSSQVGCA+ C FC T + G R+
Sbjct: 87 HQQASDGTIKFAIMLDGGQEVETVWIP-ETDRATLCVSSQVGCALECTFCSTAQQGFNRN 145
Query: 243 LTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 298
L+ AEI+ Q A F + ITNVV MGMGEPL N++NV+ A +IM+ + G
Sbjct: 146 LSVAEIIGQVWRVATFIGLSKDTSKRPITNVVMMGMGEPLLNLKNVVPAMDIMLDDFGFG 205
Query: 299 FSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
S R+VT+STSG+VP L ++ + ALA+SL+A +E+R+ ++P+N+KY + + +R
Sbjct: 206 LSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAADNELRDELVPVNKKYPIEEFLAAVR 265
Query: 359 EEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPT 416
L N +V EYVML GVNDS D A L ++Q P KINLI FNP+ GS +T +
Sbjct: 266 RYLAKSKANQGRVTVEYVMLNGVNDSTDQAHALARVLQDTPSKINLIPFNPYPGSPYTCS 325
Query: 417 TDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 326 SNSRIDRFSKVLMSYGFTTVVRKTRGDDIDAACGQL 361
>gi|254236710|ref|ZP_04930033.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126168641|gb|EAZ54152.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 379
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+Q+ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 8 KVNLLGLTQPQLEQFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKL 62
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 63 KASAEIRGPEIVSQDISADGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 121
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LTAAE++ Q A + + +ITNVV MGM EPL N +NV+
Sbjct: 122 SFCSTGKQGFNSDLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMSEPLLNFDNVV 181
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A NIM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 182 AAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPIN 241
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY LG+L++ R + +VL EY +L VND + A+++I L++ PCKINLI
Sbjct: 242 KKYPLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKDTPCKINLIP 301
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V +R +RGDD AACGQL
Sbjct: 302 FNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 349
>gi|430806169|ref|ZP_19433284.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
gi|429501549|gb|EKZ99880.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
Length = 384
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 190/328 (57%), Gaps = 13/328 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W +G A D + L K ++ L+ AE R+ + TSSDGTRK
Sbjct: 27 FRARQ-LQRWIHQFG----ASHFDAMTDLAKSLREKLATRAEIRSPAAISDNTSSDGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + DG +ETV IP + R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 82 WLLDVGDGNAVETVYIPEDT-RGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQL 140
Query: 253 VFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
A + +++G I+NVV MGMGEPL N + V+ A +M+ + S R+VT
Sbjct: 141 WMAEFAMRAQLGRGPKDERVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + + ALAVSL+A+ D +R+ ++P+NRKY L L+ R L F
Sbjct: 201 LSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNRKYPLAELMAACRRYLEFAP 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+ FEY ML GVND + A+ L+ LV +PCK NLI FNP S + +E++ F
Sbjct: 261 RDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFA 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLG 453
IL AG +R +RGDD AACGQL
Sbjct: 321 QILMDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|329115338|ref|ZP_08244092.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
pomorum DM001]
gi|326695317|gb|EGE47004.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
pomorum DM001]
Length = 408
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 199/354 (56%), Gaps = 28/354 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S EL + +P + LW +Y + TD + + K ++ L+E
Sbjct: 50 LVGLSRDELTDILIEIGEKPFRTKQLWHWIYHQGV----TDFSRMSTIAKPLQQKLAERF 105
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFC 232
+ TSSD TRK LF DG ETV IP R R VC+SSQVGC ++C FC
Sbjct: 106 IIGRPEAATVQTSSDSTRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFC 165
Query: 233 YTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPL 278
+TG L R+L AAEIV Q + AR RLLS+ +V MGMGEPL
Sbjct: 166 HTGTQKLVRNLGAAEIVSQFMAARDSYGEWPSPKGETPRLLST-------IVLMGMGEPL 218
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
+N ENV KA I++ +G+ S R++T+STSG+VP + + +E LAVSL+A +++R
Sbjct: 219 YNYENVAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLR 278
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
+ I+P+NRKY + ++ R N ++ FEY+ML GVNDS DA+ L+ L+ GIP
Sbjct: 279 DEIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLISGIPA 338
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
K+NLI FNP GS + P+T E+ F I+ AG +R RG D +AACGQL
Sbjct: 339 KVNLIPFNPWPGSAYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACGQL 392
>gi|154147902|ref|YP_001407255.1| radical SAM protein [Campylobacter hominis ATCC BAA-381]
gi|205829692|sp|A7I414.1|RLMN_CAMHC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|153803911|gb|ABS50918.1| radical SAM enzyme, Cfr family [Campylobacter hominis ATCC BAA-381]
Length = 358
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/281 (45%), Positives = 179/281 (63%), Gaps = 16/281 (5%)
Query: 186 SSDGTRKILFMLDDGLVIETVVIPCN------------RGRTTVCVSSQVGCAMNCQFCY 233
S DG++K LF L DG IE+V++P R T+CVSSQVGC + C FC
Sbjct: 68 SVDGSKKYLFELKDGKTIESVLLPMKDEITDENGEILRHKRYTICVSSQVGCKIGCAFCL 127
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
T + G R+L+A EIVEQ +++ NVV+MGMGEPL+N+ENV KA I++
Sbjct: 128 TAKGGFVRNLSAGEIVEQIRLIKKINKIPYERRINVVYMGMGEPLNNLENVAKAIKILIQ 187
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLG 351
+GL SPR+ T+STSGL Q+K+ L E N LA+SL+A DE+R +MPINR Y +
Sbjct: 188 NEGLAISPRRQTISTSGLSSQIKK-LGEMNLGVLLAISLHAVNDELREKLMPINRAYNIA 246
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
+++ +R E +V+FEY+++ GVNDS +DAK L+ L+ GI K+NLI FNPH GS
Sbjct: 247 SIMQAVR-EFPIDLRKRVMFEYLVMDGVNDSINDAKTLVRLLNGIKAKVNLIYFNPHIGS 305
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F ++E MI+F++ L+ G T +R S+G D AACGQL
Sbjct: 306 KFHRPSEENMIKFQDYLSVHGITCTIRQSKGLDISAACGQL 346
>gi|389696205|ref|ZP_10183847.1| 23S rRNA m2A2503 methyltransferase [Microvirga sp. WSM3557]
gi|388585011|gb|EIM25306.1| 23S rRNA m2A2503 methyltransferase [Microvirga sp. WSM3557]
Length = 437
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 196/322 (60%), Gaps = 34/322 (10%)
Query: 163 KDFKKMLSEHAEFRA-------LSLKDILT---SSDGTRKILFM------LDDGLVIETV 206
+DF +M + E RA L+ +++ S DGTRK L LD G IE V
Sbjct: 87 RDFAEMTNVGKELRAKLAAAYTLARPQVVSEQVSKDGTRKWLIRMPSTGPLDKGAEIECV 146
Query: 207 VIP-CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR-------- 257
IP +RG T+CVSSQVGC + C FC+TG L R+LT+AEIV Q + AR
Sbjct: 147 YIPEVDRG--TLCVSSQVGCTLTCSFCHTGTQRLVRNLTSAEIVAQLIVARDSIGDWPDA 204
Query: 258 ------LLSSEVGS-ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSG 310
+ ++ G ++N+VFMGMGEPL+N+ +VI A ++M +GL S R++TVSTSG
Sbjct: 205 TPPEGAFVPTDGGRFVSNIVFMGMGEPLYNIGDVIAAIDVMSDGEGLTLSRRRITVSTSG 264
Query: 311 LVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 370
+VPQ+++ E+N LA+SL+A DE+R+ ++PINRKY + L++ R N ++
Sbjct: 265 VVPQMERLGAEANTMLAISLHAVRDELRDELVPINRKYDIKQLLDACRAYPGLSNARRIT 324
Query: 371 FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 430
FEYVML GVNDS DA+ L+ L++GIP KINLI FNP GS++ + E++ F I+
Sbjct: 325 FEYVMLKGVNDSDADARELVRLLKGIPAKINLIPFNPWPGSKYECSDWERIERFSEIVYR 384
Query: 431 AGCTVFLRLSRGDDQMAACGQL 452
AG +R RG D +AACGQL
Sbjct: 385 AGYASPVRTPRGRDILAACGQL 406
>gi|297183711|gb|ADI19836.1| predicted Fe-S cluster redox enzyme [uncultured alpha
proteobacterium EB000_37G09]
Length = 388
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 197/320 (61%), Gaps = 14/320 (4%)
Query: 143 KRLYGDDIWAH-CTD--ELEGLNKDFKKMLSE--HAEFRALSLKDILTSSDGTRKILFML 197
++L+G +W H TD ++ L K + +LSE H + A+S + SSDGT K L L
Sbjct: 50 RQLWGW-VWRHGVTDFSDMTDLGKPLQALLSERFHVDRPAVSRRQ--DSSDGTIKWLIKL 106
Query: 198 DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR 257
DG ETV IP + GR T+C+SSQ+GC + C FC+TG L R+L+ EI Q + A
Sbjct: 107 SDGQEAETVYIP-DDGRGTLCISSQIGCTLTCSFCHTGTQRLVRNLSVDEICGQILLAMD 165
Query: 258 LLSSEVGS-----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
L + +TN+V MGMGEPL+N + V A I++ +G+ S R++T+STSG+V
Sbjct: 166 ELGDWPATRPGRRLTNIVLMGMGEPLYNYDYVASAMRIIMSNEGVGVSKRRITLSTSGIV 225
Query: 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372
P++ + N+ LA+SL+A DE+RN ++PINRKY L LI+T+R N +V +E
Sbjct: 226 PEITRCGNDLGVNLAISLHAVRDELRNTLVPINRKYNLKTLIDTVRAYPGLSNARRVTWE 285
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
YVM+ GVNDS DA+ L+ L+ GIP KINLI FNP G+ + + DE + +F I+ AG
Sbjct: 286 YVMIDGVNDSEADARALVRLISGIPSKINLIPFNPWPGTDYKCSNDETIDKFAKIVMKAG 345
Query: 433 CTVFLRLSRGDDQMAACGQL 452
+R RG D +AACGQL
Sbjct: 346 YASPVRTPRGRDILAACGQL 365
>gi|386388745|ref|ZP_10073598.1| 23S rRNA m2A2503 methyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385697259|gb|EIG27694.1| 23S rRNA m2A2503 methyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 386
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 215/366 (58%), Gaps = 14/366 (3%)
Query: 96 SDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAH 153
SD NI V K +V L M+ ++++++ S +P +A LM W +G+D +
Sbjct: 2 SDQIQATNIAVAHPKSEKVNLMNMTRPQMREFLASLGEKPFRADQLMKWIYHFGEDNF-- 59
Query: 154 CTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG 213
D + +NK ++ L + AE +A + S+DGT K + + IETV IP
Sbjct: 60 --DNMSNINKVLREKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGEQQ-IETVYIP-EAD 115
Query: 214 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNV 269
R T+CVSSQVGCA+ C FC T + G R+L AEI+ Q A +++ + V ITNV
Sbjct: 116 RATLCVSSQVGCALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGVRPITNV 175
Query: 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVS 329
V MGMGEPL NV NV+ A IM+ + S R+VT+STSG+VP L ++ + ALA+S
Sbjct: 176 VMMGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDALRDKIDVALAIS 235
Query: 330 LNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
L+A DE+R+ I+PIN+KY + +LI ++ + E+ N+ KV EYVML VND D A
Sbjct: 236 LHAPNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHVNDEVDHAH 295
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD A
Sbjct: 296 QLAKVLKNTPCKINLIPWNPFPEAPYAKSSNSRVDRFQKALMEYGFTVTIRKTRGDDIDA 355
Query: 448 ACGQLG 453
ACGQL
Sbjct: 356 ACGQLA 361
>gi|209883455|ref|YP_002287312.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
gi|337739466|ref|YP_004631194.1| ribosomal RNA large subunit methyltransferase N [Oligotropha
carboxidovorans OM5]
gi|386028485|ref|YP_005949260.1| ribosomal RNA large subunit methyltransferase N [Oligotropha
carboxidovorans OM4]
gi|209871651|gb|ACI91447.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
gi|336093553|gb|AEI01379.1| ribosomal RNA large subunit methyltransferase N [Oligotropha
carboxidovorans OM4]
gi|336097130|gb|AEI04953.1| ribosomal RNA large subunit methyltransferase N [Oligotropha
carboxidovorans OM5]
Length = 404
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/332 (42%), Positives = 196/332 (59%), Gaps = 16/332 (4%)
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK- 192
R +A LW +Y A +E+ ++KD + L+ H + S+DGTRK
Sbjct: 54 RKMRAQQLWHWMYVRG--ARSFEEMSNVSKDMRAQLAAHFTVDRPEVVAEQVSNDGTRKW 111
Query: 193 ILFMLDDGL----VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI 248
+L M DG+ +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EI
Sbjct: 112 LLRMPGDGVGRAHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEI 170
Query: 249 VEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS 300
V Q + AR L+ V +TNVV MGMGEPL+N + V A IM +G+ S
Sbjct: 171 VGQVMVARDRLNDWVDRETPNGNRLVTNVVMMGMGEPLYNFDAVRDALKIMSDGEGIGLS 230
Query: 301 PRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
R++T+STSG+VP + + E+ LA+SL+A DE+RN ++P+NRKY + L++ R
Sbjct: 231 RRRITLSTSGVVPNIARIGEETGVMLAISLHAVRDELRNELVPLNRKYPIAQLLDACRNY 290
Query: 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 420
N ++ FEYVML GVNDS DDAK L+ L++GIP KINLI FNP GS + + E+
Sbjct: 291 PGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKGIPAKINLIPFNPWPGSVYECSDWEQ 350
Query: 421 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ +F + AG + +R RG D +AACGQL
Sbjct: 351 IEQFSEYVFNAGYSSPVRTPRGRDILAACGQL 382
>gi|329890963|ref|ZP_08269306.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568]
gi|328846264|gb|EGF95828.1| radical SAM superfamily protein [Brevundimonas diminuta ATCC 11568]
Length = 387
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/353 (42%), Positives = 205/353 (58%), Gaps = 20/353 (5%)
Query: 114 VLLKGMSFTELQQ-WVRSHAFRPGQALML------WKRLYGDDIWAHCTDELEGLNKDFK 166
V L G++ EL+Q + + P +A M W YG +A +D + KD +
Sbjct: 18 VNLSGLTRDELRQALIDAEICPPEKAKMRASQVWRWIHHYGVTDFALMSD----VAKDTR 73
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT-TVCVSSQVGC 225
L+E + + S DGTRK L G+ IETV IP + GR +CVSSQVGC
Sbjct: 74 AKLAEAFTLARPEIVERQVSKDGTRKWLIRTAPGIEIETVYIP-DVGRAGALCVSSQVGC 132
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHN 280
+NC FC+TG L R+LT AEIV Q AR L E ++N+VFMGMGEPL+N
Sbjct: 133 TLNCTFCHTGTQKLVRNLTTAEIVAQVQVARDDLDEWPSPKEDRRLSNIVFMGMGEPLYN 192
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+++V A +I+ +G+ S R++TVSTSG+VPQL + LA+SL+AT D +R+
Sbjct: 193 LDHVANAIDIISDNEGIALSRRRITVSTSGVVPQLNALGERTAAMLAISLHATNDPLRDQ 252
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
++P+N+KY L L+ +R N +V FEYVML GVNDS +A+ LI L++GIP K+
Sbjct: 253 LVPLNKKYPLDQLMAAIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIKLIEGIPSKV 312
Query: 401 NLISFNPHCGSQFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP G+ + +D K IE F IL AG +R RG D +AACGQL
Sbjct: 313 NLIPFNPWPGTDYQ-CSDWKTIETFAAILNKAGYASPIRTPRGRDILAACGQL 364
>gi|407684519|ref|YP_006799693.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'English Channel 673']
gi|407688447|ref|YP_006803620.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407700813|ref|YP_006825600.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Black Sea 11']
gi|407246130|gb|AFT75316.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'English Channel 673']
gi|407249960|gb|AFT79145.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Black Sea 11']
gi|407291827|gb|AFT96139.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 372
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 201/335 (60%), Gaps = 9/335 (2%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
L+ + + +P +A + K +Y I +E+ LNK+ + ML E+ E +A +
Sbjct: 14 LRNFFKEMGEKPFRADQVMKWIYQHGISDF--EEMSNLNKNLRAMLIENCEIKAPEIAYF 71
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
+SDGT K L+ G +E+V IP R T+CVSSQVGCA+ C FC T + G R+L
Sbjct: 72 QEASDGTIKFALTLEGGQEVESVWIP-ETDRATLCVSSQVGCALECTFCSTAQQGFNRNL 130
Query: 244 TAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
+ +EI+ Q A F S ITNVV MGMGEPL N++NV+ A +IM+ + G
Sbjct: 131 SVSEIIGQVWRVATFLGLSKDSSKRPITNVVMMGMGEPLLNLKNVVPAMDIMLDDFGFGL 190
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R+VT+STSG+VP L ++ + ALA+SL+A TDE+RN I+PIN+KY + + +R
Sbjct: 191 SKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPTDELRNEIVPINKKYNIEAFLAGVRR 250
Query: 360 EL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
L N +V EYVML+ +NDS + A +L +++ P KINLI FNP+ GS +T ++
Sbjct: 251 YLAKSKANQGRVTVEYVMLSNINDSTEQAHQLAKVLKDTPSKINLIPFNPYPGSPYTCSS 310
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ ++ F +L G T +R +RGDD AACGQL
Sbjct: 311 NSRIDRFAKVLMEYGFTTVVRKTRGDDIDAACGQL 345
>gi|384537753|ref|YP_005721838.1| Ribosomal RNA large subunit methyltransferase [Sinorhizobium
meliloti SM11]
gi|336034645|gb|AEH80577.1| Ribosomal RNA large subunit methyltransferase [Sinorhizobium
meliloti SM11]
Length = 411
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 190/331 (57%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + DE+ ++KD ++ML EH + + S DGTRK L
Sbjct: 58 LWHWLYVRGVSGF--DEMSNVSKDMREMLKEHFTIARPDIVEEQVSGDGTRKWLLRFPPR 115
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IETV IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + A
Sbjct: 116 GAGRPVEIETVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILSQLLLA 174
Query: 256 RRLLS--------------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R L +E ITN+V MGMGEPL+N ENV A I GL S
Sbjct: 175 RDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFENVKTALLIASDGDGLSLSK 234
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + E LA+SL+A D++R+ ++PIN+KY L L+E R
Sbjct: 235 RRITLSTSGIVPEIYRTGEEIGVMLAISLHAVRDDLRDMLVPINKKYPLKQLMEACRAYP 294
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML VNDS +DAK L+ L++GIP KINLI FNP G+ + + E++
Sbjct: 295 GLSNARRITFEYVMLKDVNDSLEDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQI 354
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + + AG +R RG D +AACGQL
Sbjct: 355 EKFADFINQAGYASPIRTPRGRDILAACGQL 385
>gi|408372889|ref|ZP_11170588.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
gi|407767241|gb|EKF75679.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
Length = 381
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 147/353 (41%), Positives = 210/353 (59%), Gaps = 21/353 (5%)
Query: 112 SRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+V L GMS +++ + + FR Q ++ W + D + TD + K ++
Sbjct: 5 QKVNLLGMSRPQMEAFFLEMGEKKFR-AQQVLKWIHHHQADSFEQMTD----VGKALRQK 59
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
LSE AE R ++ S DGTRK +F LD G +ETV IP R R T+CVSSQVGCA++
Sbjct: 60 LSEVAEIRGPDVEHESISRDGTRKWVFRLDTGGAVETVFIPDGR-RGTLCVSSQVGCAVD 118
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGEPLHNVENV 284
C FC TG+ G +R +T+AEI+ Q A R +G ITNVV MGMGEPL N +NV
Sbjct: 119 CSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGEHPITNVVMMGMGEPLLNYDNV 178
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM + G +++T+STSG++P++ Q ++ + ALAVSL+A DE+RN ++P+
Sbjct: 179 LTAMRIMKDDLGYGIGKKRITLSTSGVIPKMDQLSDDLDVALAVSLHAPNDELRNELVPL 238
Query: 345 NRKYKLGLLIETLR---EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
NRKY L L+ R + + ++N + EYVML VND + A++L+ L+ GIP KIN
Sbjct: 239 NRKYPLKELMAACRRYSKNITHRHN-TITMEYVMLRDVNDKPEHARQLVKLLNGIPVKIN 297
Query: 402 LISFN--PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
LI FN PH G + + +D ++EF L G +R +RGDD AACGQL
Sbjct: 298 LIPFNPFPHAGYERSRKSD--ILEFHKYLNDNGLLTTVRTTRGDDIDAACGQL 348
>gi|388257762|ref|ZP_10134941.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
gi|387938929|gb|EIK45481.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
Length = 392
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 196/327 (59%), Gaps = 12/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G D + D++ ++KD + L AE R + S+DGTRK
Sbjct: 44 FRAIQ-VMKWIHQLGADNF----DDMTNVSKDLRAKLKNIAEIRLPEVVQQFDSTDGTRK 98
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G VIETV IP + R T+CVSSQVGC+++C FC TG+ G R LTAAEI+ Q
Sbjct: 99 FLIRVTGGSVIETVFIP-DGDRGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQV 157
Query: 253 VFARR----LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A + L ++ +TNVV MGMGEPL N +NV+ + N+M+H+ S R+VT+ST
Sbjct: 158 WIAAKSFGQLQANGPRRVTNVVMMGMGEPLLNFDNVVDSMNLMMHDNAYGISKRRVTLST 217
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNN 366
SG+VPQL + ++ LA+SL+A DE+RN ++PINRKY + +L+++ + E +
Sbjct: 218 SGVVPQLDRLSQYTDACLAISLHAPNDELRNELVPINRKYPIAMLLDSAKRYIEAMPDTH 277
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
K+ EY ++ VND A L L++ +P KINLI FNP S + ++ + +F++
Sbjct: 278 RKITIEYTLIDQVNDRPHHAHELAELLRDVPVKINLIPFNPFNLSNYKRVSNNALRKFQD 337
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
IL AG +R +RGDD AACGQL
Sbjct: 338 ILMEAGYITTVRTTRGDDIDAACGQLA 364
>gi|414343116|ref|YP_006984637.1| Fe-S-cluster redox protein [Gluconobacter oxydans H24]
gi|411028451|gb|AFW01706.1| Fe-S-cluster redox protein [Gluconobacter oxydans H24]
Length = 403
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 205/352 (58%), Gaps = 11/352 (3%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+ G R L+ GMS EL + +P +A +W +Y A ++ + K +
Sbjct: 44 EDGRRDLV-GMSREELATLMTEIGEKPFRAKQIWHWIYHQG--ATDFSKMSTIAKPLQAK 100
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAM 227
L+EH + TS D TRK LF DG ETV IP + R VC+SSQVGC +
Sbjct: 101 LAEHFIVGRPTTTTEQTSVDATRKFLFRFRDGQEAETVYIPDRKEDRGAVCISSQVGCTL 160
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL------SSEVGS-ITNVVFMGMGEPLHN 280
+C FC+TG L R+L AEIV Q + AR S+++ ++ +V MGMGEPL+N
Sbjct: 161 SCTFCHTGTQKLVRNLGPAEIVGQFMAARDSYKEWPSPSADMPRFLSTIVLMGMGEPLYN 220
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+NV KA I++ +G+ S R++T+STSG+VP + + E LA+SL+A T+E+R+
Sbjct: 221 YDNVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGEELGINLAISLHAVTNELRDQ 280
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
I+P+NRKY + L+ R N+ ++ FEY+ML GVNDS DA+ L+ L++ +P K+
Sbjct: 281 IVPLNRKYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIKDMPAKV 340
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS F P+T E++ +F I+ AG +R RG D +AACGQL
Sbjct: 341 NLIPFNPWPGSDFKPSTREQLAKFAKIVMDAGFASPIRTPRGQDILAACGQL 392
>gi|339024848|ref|ZP_08646746.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter tropicalis
NBRC 101654]
gi|338750147|dbj|GAA10050.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter tropicalis
NBRC 101654]
Length = 404
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 202/347 (58%), Gaps = 14/347 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S E+ + + +P + LW +Y + TD + + K ++ L+E
Sbjct: 50 LVGLSRDEITEILLEIGEKPFRTKQLWHWIYHQGV----TDFSRMSSIAKPLQQKLAEQF 105
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFC 232
+ TS+D TRK LF DG ETV IP R R VC+SSQVGC ++C FC
Sbjct: 106 IIGRPDAAMVQTSTDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFC 165
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLS---SEVGS----ITNVVFMGMGEPLHNVENVI 285
+TG L R+L AAEIV Q + AR S S G ++ +V MGMGEPL+N EN+
Sbjct: 166 HTGTQKLVRNLGAAEIVGQFMAARDSYSEWPSPKGETPRLLSTIVLMGMGEPLYNYENIA 225
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
KA I++ +G+ S R++T+STSG+VP + + +E LAVSL+A +++R+ I+P+N
Sbjct: 226 KAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLRDQIVPLN 285
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
RKY + ++ R N ++ FEY+ML GVNDS DA+ L+ L+ GIP K+NLI F
Sbjct: 286 RKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLISGIPAKVNLIPF 345
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NP GS + P+T E+ +F +I+ AG +R RG D +AACGQL
Sbjct: 346 NPWPGSDYRPSTREQQNKFADIIMDAGFASPIRTPRGRDILAACGQL 392
>gi|308274581|emb|CBX31180.1| Ribosomal RNA large subunit methyltransferase N [uncultured
Desulfobacterium sp.]
Length = 347
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 194/331 (58%), Gaps = 5/331 (1%)
Query: 123 ELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKD 182
E W++ + ++K +Y + +E+ + + +K+L H L+ +
Sbjct: 16 EFSFWLKEMGIEAYRTHQIFKWIYSKQV--DTFEEMTDIGLELRKLLLNHYTINRLNKQK 73
Query: 183 ILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
+ SSDG++K LF L DG IE+V+IP + T+C+SSQVGCA C+FC T + G R+
Sbjct: 74 VEISSDGSKKYLFGLTDGNYIESVLIP-EKNHYTLCISSQVGCAQGCRFCLTAKGGFARN 132
Query: 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN-IMVHEQGLHFSP 301
LT AEIV Q + ++ E ++N+VFMGMGEPL N +NVIKA + I + GL FS
Sbjct: 133 LTKAEIVSQVRDIQNDVAGEKLRLSNIVFMGMGEPLANYKNVIKAIDTISAKDTGLGFSK 192
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
RK+T+ST+GLVP LK ++ LA+SLNA + R+ +MPINRKY + LIE R
Sbjct: 193 RKITISTAGLVPFLKDLGKDAGVNLAISLNAADNSTRDMLMPINRKYPVKELIEACR-TY 251
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
K ++ FEY+++ GVNDS DA RL L++ + KINLI FN + S+F + +
Sbjct: 252 DLKPRNRITFEYILIKGVNDSPADANRLAKLLRPVKSKINLIPFNEYETSEFKRPEESVI 311
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F NIL T +R S+G D AACGQL
Sbjct: 312 HHFLNILLNENYTAVIRNSKGQDISAACGQL 342
>gi|409394995|ref|ZP_11246121.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
Chol1]
gi|409395960|ref|ZP_11246985.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
Chol1]
gi|409119459|gb|EKM95842.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
Chol1]
gi|409120364|gb|EKM96713.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
Chol1]
Length = 382
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+ + S FR GQ +M W +G D + D + + K ++ L
Sbjct: 7 KVNLLGLTQPQLESFFESIGEKCFRAGQ-VMKWIHHFGVDDF----DAMSNIGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEIVSEDISSDGTRKWVVRVASGSCVETVYIP-QAGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A D +R+ ++PIN
Sbjct: 181 AAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + + +VL EY +L GVND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLQMLLESCQRYISRLGEKRVLTIEYTLLQGVNDQPEHAEQMIALLAKIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL AG V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKAGHNVTVRTTRGEDIDAACGQL 348
>gi|188997621|ref|YP_001931872.1| ribosomal RNA large subunit methyltransferase N
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932688|gb|ACD67318.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium sp. YO3AOP1]
Length = 354
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 209/347 (60%), Gaps = 11/347 (3%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
+V LK + EL+ +V ++ +A + K LY + ++ DE+ L+KD + L E+
Sbjct: 2 KVNLKNFNLKELENFVVEKGWQKFRAKQIAKWLYKKKVSSY--DEMTDLSKDIRNYLKEN 59
Query: 173 AEFRALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
EF AL L S DG+ K L+ L DG IETV+I + T+CVS+QVGCA+ C+F
Sbjct: 60 TEFNALELVMYQQSKIDGSIKFLWKLKDGNTIETVLIN-EKNHKTLCVSTQVGCAVGCKF 118
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLS-SEVGSITNVVFMGMGEPLHNVENVIKAANI 290
C+T + GL R+L AEIVEQ + +R L E I+N+V+MGMGEPL N ENV K+ I
Sbjct: 119 CFTTKDGLIRNLETAEIVEQYINVQRFLGMEEENRISNIVYMGMGEPLANYENVKKSVQI 178
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRK 347
H + S RK+T+S+SG++ Q+K+ + LAVSLNA+ + R ++MPI++
Sbjct: 179 FTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAVSLNASNQDQRAFLMPISQT 238
Query: 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP--CKINLISF 405
L L++ LR + K +++ EYV++ GVNDS DAKRL+ L++ K+NLI F
Sbjct: 239 NTLQDLMDLLR-SIPLKPGWRITLEYVLMKGVNDSEQDAKRLVNLLKKDKHRFKVNLIPF 297
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NP+ ++F +E++++F IL F+R S+G D AACGQL
Sbjct: 298 NPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDIDAACGQL 344
>gi|357974627|ref|ZP_09138598.1| radical SAM protein [Sphingomonas sp. KC8]
Length = 394
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 156/394 (39%), Positives = 218/394 (55%), Gaps = 24/394 (6%)
Query: 99 GGGDNINV----LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GD 148
GG D + V +P+ R L G++ +L+ + P QA + LW +Y G
Sbjct: 5 GGIDPVPVPRAQVPRADGRTDLIGLTRDQLRALLADAGLEPKQAKLRAKQLWHWIYNRGA 64
Query: 149 DIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVI 208
+A TD + K L E + SSDGTRK L DDG E V I
Sbjct: 65 TTFAVMTD----IAKTMHPWLDERFVIGRPEVVQAQVSSDGTRKWLLRSDDGQDYEMVFI 120
Query: 209 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EV 263
P + R T+CVSSQVGC +NC+FC+TG M L R+LTA EIV Q + AR L E
Sbjct: 121 P-DADRGTLCVSSQVGCTLNCRFCHTGTMKLVRNLTAGEIVGQVMLARDSLGEWPSQPEG 179
Query: 264 GSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESN 323
+TN+V MGMGEPL+N +NV A ++++ GL S R++T+STSG+VP +++ E
Sbjct: 180 RMLTNIVMMGMGEPLYNFDNVRDALSLVMDGDGLALSKRRITLSTSGVVPMMEKAGKEIG 239
Query: 324 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 383
LAVSL+A T E+R+ I+PINRKY + L+ N ++ FEYVML NDS
Sbjct: 240 VNLAVSLHAVTKEIRDEIVPINRKYGIEELLAACAAYPGANNARRITFEYVMLKDKNDSD 299
Query: 384 DDAKRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
DA+ L+ L++ +P K+NLI FNP G + ++DE++ F +I+ AG + +R R
Sbjct: 300 ADARELVRLIRHYKLPAKVNLIPFNPWPGVPYECSSDERIARFSDIIFKAGISAPVRQPR 359
Query: 442 GDDQMAACGQLGNPGA--IQAPLLRVPEKFQTAI 473
G D MAACGQL + +A L R E+ Q A+
Sbjct: 360 GRDIMAACGQLKSAAEKISRAELDRRAEEKQAAL 393
>gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1]
gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 410
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/345 (40%), Positives = 207/345 (60%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA 173
L GM+ EL+ + S +P +A +M W +G D + D++ +++D ++ L A
Sbjct: 10 LLGMTRRELEDFFVSLGEKPFRAHQVMKWIHFFGVDDF----DQMTNVSRDLREKLKAVA 65
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFC 232
A ++ S DGTRK + LD+G +ETV IP NRG T+CVSSQVGC+++C FC
Sbjct: 66 VIPAPAISYENISKDGTRKWVIRLDNGNAVETVFIPDGNRG--TLCVSSQVGCSLDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +R LTAAEI+ Q A R +ITNVV MGMGEPL N++NV+ A
Sbjct: 124 STGKQGFQRDLTAAEIIAQLWVANRSFGVPDNKGHRNITNVVMMGMGEPLLNLDNVVSAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
IM + G + ++VT+STSG+VP++ + + + +LAVSL+A D +R+ +MPINRKY
Sbjct: 184 EIMKDDLGYGVARKRVTLSTSGVVPKMYELFDRIDVSLAVSLHAPNDTLRDELMPINRKY 243
Query: 349 KLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L L++ R + + + +V EYV+L G+ND+F A L+ L++ +P KINLI FNP
Sbjct: 244 PLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTFAHAAELVELLRDVPSKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ + ++ F+ +L A +R +RGDD AACGQL
Sbjct: 304 FPHAPYKRPNGYRVKAFQEVLLKADYVTTIRTTRGDDIDAACGQL 348
>gi|237755450|ref|ZP_04584074.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692382|gb|EEP61366.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 354
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 207/347 (59%), Gaps = 11/347 (3%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
+V LK + EL+ +V ++ +A + K LY A DE+ L+KD + L E+
Sbjct: 2 KVNLKNFNLKELENFVVEKGWQKFRAKQIAKWLYKKK--ASSYDEMTDLSKDIRNYLKEN 59
Query: 173 AEFRALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
EF AL L S DG+ K L+ L DG IETV+I + T+CVS+QVGCA+ C+F
Sbjct: 60 TEFNALELVMYQQSKIDGSIKFLWKLKDGNTIETVLIN-EKNHKTLCVSTQVGCAVGCKF 118
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLL-SSEVGSITNVVFMGMGEPLHNVENVIKAANI 290
C+T + GL R+L AEIVEQ + +R L E I+N+V+MGMGEPL N ENV K+ I
Sbjct: 119 CFTTKDGLIRNLETAEIVEQYINVQRFLGDEEENRISNIVYMGMGEPLANYENVKKSVQI 178
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRK 347
H + S RK+T+S+SG++ Q+K+ + LAVSLNA+ + R ++MPI++
Sbjct: 179 FTHPDMVGLSHRKITISSSGILHQIKRMYEDKEFPEVKLAVSLNASNQDQRAFLMPISQT 238
Query: 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP--CKINLISF 405
L L++ LR + K +++ EYV++ GVNDS DAKRL+ L++ K+NLI F
Sbjct: 239 NTLQDLMDLLR-SIPLKPGWRITLEYVLIKGVNDSEQDAKRLVNLLKKDKHRFKVNLIPF 297
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NP+ ++F +E++++F IL F+R S+G D AACGQL
Sbjct: 298 NPYPSAEFERPEEERVLKFEKILWDNNIATFIRWSKGRDIDAACGQL 344
>gi|418294917|ref|ZP_12906794.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379066277|gb|EHY79020.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 382
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ ++L+ + S FR GQ +M W +G D + D + L K ++ L
Sbjct: 7 KVNLLGLTQSQLESFFESVGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNLGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEIVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + S +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +IM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+R+ ++PIN
Sbjct: 181 AAMHIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDELRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L G+ND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLDMLLAACKRYISQLGEKRVLTIEYTLLKGINDQPEHAEQMITLLANIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL G V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILRKGGHNVTVRTTRGEDIDAACGQL 348
>gi|358450412|ref|ZP_09160875.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
gi|385331231|ref|YP_005885182.1| hypothetical protein HP15_1490 [Marinobacter adhaerens HP15]
gi|311694381|gb|ADP97254.1| conserved hypothetical protein [Marinobacter adhaerens HP15]
gi|357225343|gb|EHJ03845.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
Length = 370
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L GM +L+ + S FR Q L + DD D++ ++K ++ L +
Sbjct: 10 LLGMPKAKLEAFFESLGEKRFRATQVLQWIHQRGADDF-----DQMTNMSKALREKLKQV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + TS DGTRK + +D+G +ETV+IP + R T+CVSSQ+GC+++C FC
Sbjct: 65 AEIRGPEVVYDETSKDGTRKWVMRMDNGNSVETVLIP-DGERGTLCVSSQIGCSLDCTFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARR-LLSSEVGS---ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G R+LTAAE++ Q AR+ + E G ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKRGFNRNLTAAEVIGQVWVARKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNVVDAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
N+M+ + S R+VT+STSG+VP L + ++ +LA+SL+A DE+RN ++P+N+KY
Sbjct: 184 NLMMEDLAYGISKRRVTLSTSGVVPALDRLSEVTDVSLAISLHAPNDELRNKLVPLNKKY 243
Query: 349 KLG-LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
+ LL T R + K EY ++ G+ND + A+ L L++ +PCKINLI FNP
Sbjct: 244 PISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELAVLLRDLPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S F + F+N+L AG +R +RGDD AACGQL
Sbjct: 304 FPESDFRRPSMNATRRFQNVLNEAGYITTIRTTRGDDIDAACGQL 348
>gi|240849701|ref|YP_002971089.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup]
gi|240266824|gb|ACS50412.1| hypothetical protein Bgr_00190 [Bartonella grahamii as4aup]
Length = 408
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 206/371 (55%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
NV+ K+ S++ L G+S E+ Q +++ Q M LW LY + DE+
Sbjct: 20 NVVVKESSKLSLIGLSQDEMVQALKTVGVPEHQTRMRVRQLWHWLYVRGVSNF--DEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++ L H + S DGTRK L + IETV IP GR
Sbjct: 78 ISKAMQETLKCHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPI 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP + + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL+E R N ++ FEYVML +ND
Sbjct: 257 IGVMLAISLHAVHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDIND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKRLIKLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|404255289|ref|ZP_10959257.1| radical SAM protein [Sphingomonas sp. PAMC 26621]
Length = 383
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 148/383 (38%), Positives = 221/383 (57%), Gaps = 20/383 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDI--WAHCTDELE 159
++P+ R+ L G+S +L+ + + P QA + LW +Y + ++ TD
Sbjct: 5 LVPRSDGRIDLLGLSKPDLRMALETSQLDPKQAKLRAKQLWHWIYNRGVTDFSLMTD--- 61
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
++K + L + + + S+DGTRK L DDG E V IP + R T+CV
Sbjct: 62 -ISKTMQPWLEQRFTISRPQVVEAQVSTDGTRKWLLRTDDGNDYEMVFIP-DADRGTLCV 119
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGM 274
SSQVGC +NC+FC+TG M L R+LT +EIV Q + AR L E +TN+V MGM
Sbjct: 120 SSQVGCTLNCRFCHTGTMRLVRNLTPSEIVGQVMLARDALGEWPSQPEGRMLTNIVMMGM 179
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATT 334
GEPL+N +NV I++ G+ S R++T+STSG+VP + + E + LAVSL+A T
Sbjct: 180 GEPLYNFDNVRDGLKIVMDGDGIGLSRRRITLSTSGVVPLMARAGEEISVNLAVSLHAVT 239
Query: 335 DEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+E+R+ I+PINRKYKL +++ + N ++ FEYVML NDS DA+ L+ L++
Sbjct: 240 NEIRDEIVPINRKYKLEQVLQACADYPGANNARRITFEYVMLKDKNDSDADARELVRLLK 299
Query: 395 --GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+P K+NLI FNP G+ + +T E++ F NI+ AG + +R RG D AACGQL
Sbjct: 300 LYDLPAKVNLIPFNPWPGAPYECSTPERIKAFSNIVFDAGISAPVRTPRGRDIDAACGQL 359
Query: 453 --GNPGAIQAPLLRVPEKFQTAI 473
+ +A L R+ E+ Q A+
Sbjct: 360 KTASEKKTRAELDRLAEEKQAAL 382
>gi|149913266|ref|ZP_01901800.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b]
gi|149813672|gb|EDM73498.1| hypothetical protein RAZWK3B_04720 [Roseobacter sp. AzwK-3b]
Length = 382
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 187/302 (61%), Gaps = 11/302 (3%)
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
L+K +++ML+E+ + S+DGTRK L + G +E V IP R T+C+S
Sbjct: 61 LSKTYRQMLAENFVIEIPEMVSKQVSADGTRKYLVRIAGGHEVEVVYIP-ETDRGTLCIS 119
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS------EVGS----ITNVV 270
SQVGC + C FC+TG L R+L+A EIV Q + AR L G ++N+V
Sbjct: 120 SQVGCTLTCSFCHTGTQKLVRNLSAGEIVGQVMMARDDLDEWPRPGEGAGERPRLLSNIV 179
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C LAVS
Sbjct: 180 LMGMGEPLYNFDNVRDAMKIAMDGEGISLSRRRITLSTSGVVPEIAKTAEEIGCMLAVSF 239
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+ATTDEVR+ ++PIN+K+ + L+ LRE N+ ++ FEYVML VNDS DA+RL+
Sbjct: 240 HATTDEVRDKLVPINKKWNIETLLGALREYPRLSNSERITFEYVMLKDVNDSDADARRLV 299
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++GIP KINLI FN G+ + +++ +F +I+ AG +R RG+D MAACG
Sbjct: 300 QLIKGIPAKINLIPFNEWPGAPHQRSDWDRIEKFADIVYKAGYASPIRTPRGEDIMAACG 359
Query: 451 QL 452
QL
Sbjct: 360 QL 361
>gi|426402701|ref|YP_007021672.1| hypothetical protein Bdt_0698 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425859369|gb|AFY00405.1| hypothetical protein Bdt_0698 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 399
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 206/351 (58%), Gaps = 7/351 (1%)
Query: 102 DNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGL 161
DN+ P + V ++ +L+ +++S +A ++K +Y + +++ L
Sbjct: 17 DNV-AKPLENQPVNFYSLTLEDLKAYIKSKGKEQFRAQQIFKWVYEQRVTD--PEQMTNL 73
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
+K+F++ L F + L S DGT+K LF + DG+ +E VVIP + R T+C+SS
Sbjct: 74 SKEFRQDLPSMLSFELPPVLQHLKSVDGTQKFLFDMKDGMSVEAVVIP-SEDRLTLCISS 132
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV 281
+VGC M C+FC+TG+ LKR L +IV Q + L+ E ITN+VFMGMGEPL N
Sbjct: 133 EVGCNMACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLA-EGQRITNIVFMGMGEPLDNP 191
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
E V K +++ G++ S +K+TVSTSG+VP++ + + ++ LAVSLN DE+R +
Sbjct: 192 EAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWR-VADAKVRLAVSLNGPNDEIRTQV 250
Query: 342 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
MPIN+++ L+E +E + K+ FEYV+L G+ D + A++L+ LV+ +PCKIN
Sbjct: 251 MPINKRWDTKTLLEACKEHYRVSKD-KITFEYVLLKGITDQLEHARQLVKLVKDVPCKIN 309
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+I FN H GS + D+ + F L G V LR S G D AACGQL
Sbjct: 310 IIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQL 360
>gi|418401461|ref|ZP_12974989.1| ribosomal RNA large subunit methyltransferase N [Sinorhizobium
meliloti CCNWSX0020]
gi|359504569|gb|EHK77103.1| ribosomal RNA large subunit methyltransferase N [Sinorhizobium
meliloti CCNWSX0020]
Length = 411
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 190/331 (57%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + DE+ ++KD ++ML EH + + S DGTRK L
Sbjct: 58 LWHWLYVRGVSDF--DEMSNVSKDMREMLKEHFTIARPEIVEEQVSGDGTRKWLLRFPPR 115
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IETV IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + A
Sbjct: 116 GAGRPVEIETVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILSQLLLA 174
Query: 256 RRLLS--------------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R L +E ITN+V MGMGEPL+N ENV A I GL S
Sbjct: 175 RDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFENVKTALLIASDGDGLSLSK 234
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + E LA+SL+A D++R+ ++PIN+KY L L+E R
Sbjct: 235 RRITLSTSGIVPEIYRTGEEIGVMLAISLHAVRDDLRDMLVPINKKYPLKQLMEACRAYP 294
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML VNDS +DAK L+ L++GIP KINLI FNP G+ + + E++
Sbjct: 295 GLSNARRITFEYVMLKDVNDSLEDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQI 354
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + + AG +R RG D +AACGQL
Sbjct: 355 EKFADFINQAGYASPIRTPRGRDILAACGQL 385
>gi|323143782|ref|ZP_08078450.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
12066]
gi|322416495|gb|EFY07161.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
12066]
Length = 357
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 133/341 (39%), Positives = 202/341 (59%), Gaps = 9/341 (2%)
Query: 119 MSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRAL 178
+ EL+ + S +P +A K +Y + D + + KD ++ L E A +A
Sbjct: 3 LGVDELKDFAVSLGEKPFRATQFLKWIYQYGVTDF--DLMTNIKKDLREKLKEIACIKAP 60
Query: 179 SLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG 238
+ SSDGT K + DG ++ETV+IP GR T+C+S+QVGC + C FC TG G
Sbjct: 61 EIVTEQRSSDGTVKWALDIGDGQLVETVLIP-EEGRNTLCISTQVGCPVKCAFCRTGASG 119
Query: 239 LKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE 294
R+L+ +EI+ Q A + + E I+NVV MGMGEPL+NV+ V+K I++++
Sbjct: 120 FNRNLSVSEIIGQVWRAASRVGFSQNEEQKPISNVVMMGMGEPLYNVDAVLKVTEILLND 179
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
S R+VT+STSG+ P + + + + ALA+SL+A DE+R+ ++P+N+KYK+ +++
Sbjct: 180 NAFALSKRRVTISTSGVAPIIDKIAGKVDVALALSLHAPNDELRDVLVPLNKKYKIDVVL 239
Query: 355 ETLREELHFKNNY--KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
+++R L N K EYV+L +NDS D A+ L L++ PCKINLI FNPH S+
Sbjct: 240 KSVRNYLSKSNANCGKATIEYVLLDHINDSTDQAEELARLLKDTPCKINLIPFNPHEQSE 299
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F ++ ++ F +L G G TV R +RGDD AACGQL
Sbjct: 300 FKRPSNSRVDRFYKVLTGHGYTVMTRTTRGDDIAAACGQLA 340
>gi|456351831|dbj|BAM86276.1| putative pyruvate formate lyase activating enzyme 2 [Agromonas
oligotrophica S58]
Length = 403
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 209/365 (57%), Gaps = 24/365 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
V P K S L G+S EL + P Q M LW LY A DE+ +
Sbjct: 23 VPPAKPS---LLGLSRAELAATLGEIGVAPRQQKMRVQQLWHWLYFRG--AKSFDEMTSV 77
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRT 215
+KD + L+EH + S+DGTRK L L G +E V IP R
Sbjct: 78 SKDTRTALAEHFTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIP-ETDRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS------SEVGS--IT 267
T+CVSSQVGC +NC FC+TG L R+LTA EI+ Q + AR L+ + +G+ IT
Sbjct: 137 TLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWADRETPLGNRLIT 196
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N + V A I+ +G+ S R++T+STSG+VP +K+ E LA
Sbjct: 197 NIVMMGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLA 256
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A DE+RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDA+
Sbjct: 257 ISLHAVRDELRNELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAR 316
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
L+ L++G+P KINLI FNP GS + + E++ +F + AG + +R RG D +A
Sbjct: 317 LLVKLLKGVPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILA 376
Query: 448 ACGQL 452
ACGQL
Sbjct: 377 ACGQL 381
>gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
Length = 386
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 215/366 (58%), Gaps = 14/366 (3%)
Query: 96 SDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAH 153
SD NI V K +V L M+ ++++++ S +P +A LM W +G+D +
Sbjct: 2 SDQIQATNIAVAHPKSEKVNLMNMTRPQMREFLASLGEKPFRADQLMKWIYHFGEDNF-- 59
Query: 154 CTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG 213
D + +NK ++ L + AE +A + S+DGT K + + IETV IP
Sbjct: 60 --DNMSNINKVLREKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGEQQ-IETVYIP-EAD 115
Query: 214 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNV 269
R T+CVSSQVGCA+ C FC T + G R+L AEI+ Q A +++ + V ITNV
Sbjct: 116 RATLCVSSQVGCALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGVRPITNV 175
Query: 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVS 329
V MGMGEPL NV NV+ A IM+ + S R+VT+STSG+VP L + + ALA+S
Sbjct: 176 VMMGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAIS 235
Query: 330 LNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
L+A DE+R+ I+PIN+KY + +LI+++ + E+ N+ KV EYVML +ND D A
Sbjct: 236 LHAPNDEIRDEIVPINKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAH 295
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD A
Sbjct: 296 QLAKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDA 355
Query: 448 ACGQLG 453
ACGQL
Sbjct: 356 ACGQLA 361
>gi|42522317|ref|NP_967697.1| hypothetical protein Bd0733 [Bdellovibrio bacteriovorus HD100]
gi|81618236|sp|Q6MPV7.1|RLMN_BDEBA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|39574848|emb|CAE78690.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 399
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 207/351 (58%), Gaps = 7/351 (1%)
Query: 102 DNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGL 161
DN+ P + V ++ +L+ +++S +A ++K +Y + +++ L
Sbjct: 17 DNV-AKPLENQPVNFYSLTLEDLKAYIKSKGKEQFRAQQIFKWVYEQRVTD--PEQMTNL 73
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
+K+F++ L F + L S DGT+K LF + DG+ +E VVIP + R T+C+SS
Sbjct: 74 SKEFRQDLPSMLSFDLPPVLQHLKSVDGTQKFLFDMKDGMSVEAVVIP-SEDRLTLCISS 132
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV 281
+VGC M C+FC+TG+ LKR L +IV Q + L+ E ITN+VFMGMGEPL N
Sbjct: 133 EVGCNMACKFCFTGKQKLKRRLRTEDIVGQFMQVHDRLA-EGQRITNIVFMGMGEPLDNP 191
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
E V K +++ G++ S +K+TVSTSG+VP++ + + ++ LAVSLN DE+R+ +
Sbjct: 192 EAVFKTIDVIHSPWGINLSRKKITVSTSGIVPEMWR-VADAKVRLAVSLNGPNDEIRSQV 250
Query: 342 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
MPIN+++ L+E +E + K+ FEYV+L G+ D + A++L+ LV+ +PCKIN
Sbjct: 251 MPINKRWDTKALLEACKEHYRVSKD-KITFEYVLLKGITDQLEHARQLVKLVKDVPCKIN 309
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+I FN H GS + D+ + F L G V LR S G D AACGQL
Sbjct: 310 IIPFNEHPGSGYERPDDDTIQAFHTELMNLGAHVLLRRSMGRDIFAACGQL 360
>gi|349700300|ref|ZP_08901929.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter
europaeus LMG 18494]
Length = 414
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 197/352 (55%), Gaps = 24/352 (6%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
L G+S EL + +P + LW +Y A + + + ++ L+E
Sbjct: 50 LVGLSREELTDIMVEIGEKPFRTKQLWHWIYHQG--ATDFSRMSSIARPLQEKLAERFVV 107
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFCYT 234
+ TS D TRK LF DG ETV IP + R VC+SSQVGC ++C FC+T
Sbjct: 108 GRPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPDRQEDRGAVCISSQVGCTLSCTFCHT 167
Query: 235 GRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHN 280
G L R+L AAEIV Q + AR RLLS+ +V MGMGEPL+N
Sbjct: 168 GTQALVRNLGAAEIVGQFMAARDSYGEWPSPKGDTPRLLST-------IVLMGMGEPLYN 220
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+NV KA I++ +G+ S R++T+STSG+VP + Q E LAVSL+A D++R+
Sbjct: 221 YDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHAVRDDLRDE 280
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
I+P+NRKY + +I R N ++ FEY+ML GVNDS DA+ L+ L+ GIP K+
Sbjct: 281 IVPLNRKYPIKEVIAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLISGIPAKV 340
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS + P+T E++ F I+ AG +R+ RG D +AACGQL
Sbjct: 341 NLIPFNPWPGSSYRPSTREQLDRFAKIVMDAGFASPIRMPRGRDILAACGQL 392
>gi|330994687|ref|ZP_08318610.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
sp. SXCC-1]
gi|329758328|gb|EGG74849.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
sp. SXCC-1]
Length = 412
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/352 (40%), Positives = 198/352 (56%), Gaps = 24/352 (6%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
L G+S EL + +P + LW +Y A + + + ++ L+E
Sbjct: 49 LVGLSREELTDIMVEIGEKPFRTKQLWHWIYHQG--ATDFSRMSSIARPLQEKLAERFVV 106
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFCYT 234
+ TS D TRK LF DG ETV IP + R VC+SSQVGC ++C FC+T
Sbjct: 107 GRPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPDRQEDRGAVCISSQVGCTLSCTFCHT 166
Query: 235 GRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHN 280
G L R+L AAEIV Q + AR RLLS+ +V MGMGEPL+N
Sbjct: 167 GTQALVRNLGAAEIVGQFMAARDSYGEWPSPKGDTPRLLST-------IVLMGMGEPLYN 219
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+NV KA I++ +G+ S R++T+STSG+VP + Q E LAVSL+A D++R+
Sbjct: 220 YDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHAVRDDLRDE 279
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
I+P+NRKY + +I R N ++ FEY+ML G+NDS DA+ L+ L+ GIP K+
Sbjct: 280 IVPLNRKYPIRDVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLISGIPAKV 339
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS + P+T E++ F NI+ AG +R+ RG D +AACGQL
Sbjct: 340 NLIPFNPWPGSSYRPSTREQLERFANIVMDAGFASPIRMPRGRDILAACGQL 391
>gi|15966967|ref|NP_387320.1| hypothetical protein SMc03831 [Sinorhizobium meliloti 1021]
gi|334317913|ref|YP_004550532.1| ribosomal RNA large subunit methyltransferase N [Sinorhizobium
meliloti AK83]
gi|384531037|ref|YP_005715125.1| ribosomal RNA large subunit methyltransferase N [Sinorhizobium
meliloti BL225C]
gi|407722224|ref|YP_006841886.1| hypothetical protein BN406_03015 [Sinorhizobium meliloti Rm41]
gi|433614987|ref|YP_007191785.1| 23S rRNA m2A2503 methyltransferase [Sinorhizobium meliloti GR4]
gi|81633717|sp|Q92L68.1|RLMN_RHIME RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|15076240|emb|CAC47793.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333813213|gb|AEG05882.1| Ribosomal RNA large subunit methyltransferase N [Sinorhizobium
meliloti BL225C]
gi|334096907|gb|AEG54918.1| Ribosomal RNA large subunit methyltransferase N [Sinorhizobium
meliloti AK83]
gi|407320456|emb|CCM69060.1| hypothetical protein BN406_03015 [Sinorhizobium meliloti Rm41]
gi|429553177|gb|AGA08186.1| 23S rRNA m2A2503 methyltransferase [Sinorhizobium meliloti GR4]
Length = 411
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 190/331 (57%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + DE+ ++KD ++ML EH + + S DGTRK L
Sbjct: 58 LWHWLYVRGVSDF--DEMSNVSKDMREMLKEHFTIARPDIVEEQVSGDGTRKWLLRFPPR 115
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IETV IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + A
Sbjct: 116 GAGRPVEIETVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILSQLLLA 174
Query: 256 RRLLS--------------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R L +E ITN+V MGMGEPL+N ENV A I GL S
Sbjct: 175 RDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFENVKTALLIASDGDGLSLSK 234
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + E LA+SL+A D++R+ ++PIN+KY L L+E R
Sbjct: 235 RRITLSTSGIVPEIYRTGEEIGVMLAISLHAVRDDLRDMLVPINKKYPLKQLMEACRAYP 294
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML VNDS +DAK L+ L++GIP KINLI FNP G+ + + E++
Sbjct: 295 GLSNARRITFEYVMLKDVNDSLEDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQI 354
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + + AG +R RG D +AACGQL
Sbjct: 355 EKFADFINQAGYASPIRTPRGRDILAACGQL 385
>gi|419954091|ref|ZP_14470232.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri TS44]
gi|387969180|gb|EIK53464.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri TS44]
Length = 382
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+ + S FR GQ +M W +G D + D + + K ++ L
Sbjct: 7 KVNLLGLTQPQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNIGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEIVSEDISSDGTRKWVVRVASGSCVETVYIP-QAGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A D +R+ ++PIN
Sbjct: 181 AAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + + +VL EY +L GVND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLQMLLESCQRYISRLGEKRVLTIEYTLLQGVNDQPEHAEQMIALLAKIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL AG V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKAGHNVTVRTTRGEDIDAACGQL 348
>gi|395491425|ref|ZP_10423004.1| radical SAM protein [Sphingomonas sp. PAMC 26617]
Length = 379
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 148/383 (38%), Positives = 221/383 (57%), Gaps = 20/383 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDI--WAHCTDELE 159
++P+ R+ L G+S +L+ + + P QA + LW +Y + ++ TD
Sbjct: 1 MVPRSDGRIDLLGLSKPDLRMALETSQLDPKQAKLRAKQLWHWIYNRGVTDFSLMTD--- 57
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
++K + L + + + S+DGTRK L DDG E V IP + R T+CV
Sbjct: 58 -ISKTMQPWLEQRFTISRPQVVEAQVSTDGTRKWLLRTDDGNDYEMVFIP-DADRGTLCV 115
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGM 274
SSQVGC +NC+FC+TG M L R+LT +EIV Q + AR L E +TN+V MGM
Sbjct: 116 SSQVGCTLNCRFCHTGTMRLVRNLTPSEIVGQVMLARDALGEWPSQPEGRMLTNIVMMGM 175
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATT 334
GEPL+N +NV I++ G+ S R++T+STSG+VP + + E + LAVSL+A T
Sbjct: 176 GEPLYNFDNVRDGLKIVMDGDGIGLSRRRITLSTSGVVPLMARAGEEISVNLAVSLHAVT 235
Query: 335 DEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+E+R+ I+PINRKYKL +++ + N ++ FEYVML NDS DA+ L+ L++
Sbjct: 236 NEIRDEIVPINRKYKLEQVLQACADYPGANNARRITFEYVMLKDKNDSDADARELVRLLK 295
Query: 395 --GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+P K+NLI FNP G+ + +T E++ F NI+ AG + +R RG D AACGQL
Sbjct: 296 LYDLPAKVNLIPFNPWPGAPYECSTPERIKAFSNIVFDAGISAPVRTPRGRDIDAACGQL 355
Query: 453 --GNPGAIQAPLLRVPEKFQTAI 473
+ +A L R+ E+ Q A+
Sbjct: 356 KTASEKKTRAELDRLAEEKQAAL 378
>gi|392375105|ref|YP_003206938.1| pyruvate formate lyase activating enzyme 2 (yfgB) [Candidatus
Methylomirabilis oxyfera]
gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Candidatus Methylomirabilis oxyfera]
Length = 372
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHA---FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+++ LKG+S E+++ V H +R G+ L W +Y D AH E+ L +
Sbjct: 20 NKIDLKGLSLEEMERVVSDHGEPVYR-GRQLFHW--IYARD--AHTFAEMTDLPIALRAR 74
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L+EH AL+ S DGTRK L D IETV+IP R R T C+S+QVGCA+
Sbjct: 75 LAEHTAIGALTPLAKEISRDGTRKYLLGCTDERQIETVLIPDER-RLTACLSTQVGCALA 133
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAA 288
C FC TG+MG RHL + E+V+Q + +R L I N+V MGMGEPLHN + +KA
Sbjct: 134 CAFCLTGKMGFVRHLQSGEVVDQVLALQRDLQPG-ERIGNLVLMGMGEPLHNYDATVKAL 192
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINR 346
I+ H GL + PR++T+ST GLVP++ + L +S LAVSL+A+TDE+R+ ++PINR
Sbjct: 193 TILSHPMGLAYPPRRITLSTVGLVPEIVR-LGQSGLGVNLAVSLHASTDELRDRLVPINR 251
Query: 347 KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
+Y L L+ LR + ++ FEYV++ GVND +DA+ L+ L++G+ CK+NL+S N
Sbjct: 252 RYPLKELMVALRA-YPLPSRRRLTFEYVLIDGVNDRSEDARELVKLLRGLRCKVNLLSLN 310
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
F + E++ F+ IL A +R SRG D AACG L
Sbjct: 311 EAPAIPFRRPSQERVEMFQRILRSADILATIRESRGLDISAACGLLAT 358
>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
Length = 411
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 212/365 (58%), Gaps = 23/365 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
V+P ++V L GMS TEL+++ + FR GQ +M W Y +A E+ ++
Sbjct: 23 VIPAAENKVNLLGMSRTELEKFFEDIGEKKFRAGQ-VMKWMHQYFITDFA----EMTNIS 77
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRG---RTTV 217
++ L + E +A + S DGTRK +F + DG ++ETV+IP R T+
Sbjct: 78 GKLREKLEQICEIKAPEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGLRKTL 137
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVF 271
C+SSQVGCA++C FC TG+ G +R LT EI+ Q A EV S+TNVV
Sbjct: 138 CISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVM 197
Query: 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLN 331
MGMGEPL N + V+ + IM+ + S R+VT+STSG+VP++ Q + + ALA+SL+
Sbjct: 198 MGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLH 257
Query: 332 ATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK----VLFEYVMLAGVNDSFDDAK 387
A DE+RN ++PIN+KY L LI + + N V EYVML GVND + A+
Sbjct: 258 APNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHPEHAQ 317
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
++I L++ +P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD A
Sbjct: 318 QMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDA 377
Query: 448 ACGQL 452
ACGQL
Sbjct: 378 ACGQL 382
>gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|410862372|ref|YP_006977606.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii AltDE1]
gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|410819634|gb|AFV86251.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii AltDE1]
Length = 372
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 201/335 (60%), Gaps = 9/335 (2%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
L+ + + +P +A + K +Y + +E+ LNK+ + ML E+ E +A +
Sbjct: 14 LRNFFKEMGEKPFRADQVMKWIYQHGVSDF--EEMSNLNKNLRAMLIENCEIKAPEIAYF 71
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
+SDGT K L+ G +E+V IP R T+CVSSQVGCA+ C FC T + G R+L
Sbjct: 72 QEASDGTIKFALTLEGGQEVESVWIP-ETDRATLCVSSQVGCALECTFCSTAQQGFNRNL 130
Query: 244 TAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
+ +EI+ Q A F S ITNVV MGMGEPL N++NV+ A +IM+ + G
Sbjct: 131 SVSEIIGQVWRVATFLGLSKDSSKRPITNVVMMGMGEPLLNLKNVVPAMDIMLDDFGFGL 190
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R+VT+STSG+VP L ++ + ALA+SL+A TDE+RN I+P+N+KY + + +R
Sbjct: 191 SKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPTDELRNEIVPVNKKYNIEAFLAGVRR 250
Query: 360 EL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
L N +V EYVML+ +NDS + A +L +++ P KINLI FNP+ GS +T ++
Sbjct: 251 YLAKSKANQGRVTVEYVMLSNINDSTEQAHQLAKVLKDTPSKINLIPFNPYPGSPYTCSS 310
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ ++ F +L G T +R +RGDD AACGQL
Sbjct: 311 NSRIDRFSKVLMEYGFTTVVRKTRGDDIDAACGQL 345
>gi|319404936|emb|CBI78538.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 409
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 150/366 (40%), Positives = 203/366 (55%), Gaps = 26/366 (7%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDF 165
K ++ L G+S E+ Q +R Q M LW LY + +H DE+ ++K
Sbjct: 25 KQPKLPLIGLSQDEMAQALRIIGVPEHQTRMRVHQLWHWLYVRGV-SHF-DEMLNISKPM 82
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVS 220
+KML +H + S DGTRK L + + IE V IP GR T+CVS
Sbjct: 83 RKMLKDHFSIARPEIVAEQISQDGTRKWLLRFPASGTERPVEIEMVYIP-EEGRGTLCVS 141
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------------EVGSI 266
SQVGC + C FC+TG L R+LTA EI+ Q + AR L E I
Sbjct: 142 SQVGCTLTCSFCHTGTQKLVRNLTAEEILVQLLVARDCLGDFPDKNTPNGAIIPIEGRKI 201
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
TN+V MGMGEPL+N E V KA I G S R++T+STSG++P + + E L
Sbjct: 202 TNIVMMGMGEPLYNFEAVKKALLIASDGNGFSLSKRRITLSTSGVIPGIIRTGKEIGVML 261
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
A+SL+A D +R+ ++PIN+KY L LL+E R N ++ FEYVML VNDS DDA
Sbjct: 262 AISLHAVHDTLRDILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVNDSLDDA 321
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
K+LI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ RG D +
Sbjct: 322 KKLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADLINKAGYASPIRMPRGRDIL 381
Query: 447 AACGQL 452
AACGQL
Sbjct: 382 AACGQL 387
>gi|429770220|ref|ZP_19302293.1| 23S rRNA methyltransferase [Brevundimonas diminuta 470-4]
gi|429185057|gb|EKY26047.1| 23S rRNA methyltransferase [Brevundimonas diminuta 470-4]
Length = 387
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 206/353 (58%), Gaps = 20/353 (5%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQ-----ALMLWKRL--YGDDIWAHCTDELEGLNKDFK 166
V L G++ EL+Q + P + A +W+ + YG +A +D + K+ +
Sbjct: 18 VNLSGLTRDELRQALIDAGICPPEKARMRASQVWRWIHHYGVTDFALMSD----IGKETR 73
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT-TVCVSSQVGC 225
L+E + + S DGTRK L G+ IETV IP + GR +CVSSQVGC
Sbjct: 74 AALAEAFTLARPEIVERQVSKDGTRKWLIRTAPGIEIETVYIP-DVGRAGALCVSSQVGC 132
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHN 280
+NC FC+TG L R+LT AEIV Q AR L E ++N+VFMGMGEPL+N
Sbjct: 133 TLNCTFCHTGTQKLVRNLTTAEIVAQVQVARDDLDEWPSPKEDRRLSNIVFMGMGEPLYN 192
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+++V A +I+ +G+ S R++TVSTSG+VPQL + LA+SL+AT D +R+
Sbjct: 193 LDHVANAIDIISDNEGIALSRRRITVSTSGVVPQLNALGERTAAMLAISLHATNDPLRDQ 252
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
++P+N+KY L L+ +R N +V FEYVML GVNDS +A+ LI L++GIP K+
Sbjct: 253 LVPLNKKYPLDQLMAAIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIKLIEGIPSKV 312
Query: 401 NLISFNPHCGSQFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP G+ + +D K IE F IL AG +R RG D +AACGQL
Sbjct: 313 NLIPFNPWPGTDYQ-CSDWKTIETFAAILNKAGYASPIRTPRGRDILAACGQL 364
>gi|225851618|ref|YP_002731851.1| radical SAM protein [Brucella melitensis ATCC 23457]
gi|256264871|ref|ZP_05467403.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 2 str. 63/9]
gi|384210443|ref|YP_005599525.1| radical SAM protein [Brucella melitensis M5-90]
gi|384407543|ref|YP_005596164.1| radical SAM protein [Brucella melitensis M28]
gi|384444165|ref|YP_005602884.1| radical SAM enzyme, Cfr family [Brucella melitensis NI]
gi|254807158|sp|C0RGD9.1|RLMN_BRUMB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|225639983|gb|ACN99896.1| radical SAM enzyme, Cfr family protein [Brucella melitensis ATCC
23457]
gi|263095326|gb|EEZ18953.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 2 str. 63/9]
gi|326408090|gb|ADZ65155.1| radical SAM protein [Brucella melitensis M28]
gi|326537806|gb|ADZ86021.1| radical SAM enzyme, Cfr family protein [Brucella melitensis M5-90]
gi|349742162|gb|AEQ07705.1| radical SAM enzyme, Cfr family [Brucella melitensis NI]
Length = 411
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 203/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GMS E+ + + Q M LW LY + ++ ++KD + ML++
Sbjct: 30 LIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFA--DMRNISKDLRAMLAQ 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK LF + IE+V IP GR T+C+SSQVGC
Sbjct: 88 HFTIARPEVVEEQISQDGTRKWLFRFPPRSAGRPVEIESVYIP-EEGRGTLCISSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+QGIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|349686641|ref|ZP_08897783.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter
oboediens 174Bp2]
Length = 417
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 197/352 (55%), Gaps = 24/352 (6%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
L G+S EL + +P + LW +Y A + + + ++ L+E
Sbjct: 50 LVGLSREELTDIMVEIGEKPFRTKQLWHWIYHQG--ATDFSRMSSIARPLQEKLAERFVI 107
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFCYT 234
+ TS D TRK LF DG ETV IP + R VC+SSQVGC ++C FC+T
Sbjct: 108 GRPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPDRQEDRGAVCISSQVGCTLSCTFCHT 167
Query: 235 GRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPLHN 280
G L R+L AAEIV Q + AR RLLS+ +V MGMGEPL+N
Sbjct: 168 GTQALVRNLGAAEIVGQFMAARDSYGEWPSPKGETPRLLST-------IVLMGMGEPLYN 220
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+NV KA I++ +G+ S R++T+STSG+VP + Q E LAVSL+A D++R+
Sbjct: 221 YDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHAVRDDLRDE 280
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
I+P+NRKY + +I R N ++ FEY+ML G+NDS DA+ L+ L+ GIP K+
Sbjct: 281 IVPLNRKYPIREVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLISGIPAKV 340
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP GS + P+T E++ F I+ AG +R+ RG D +AACGQL
Sbjct: 341 NLIPFNPWPGSSYRPSTREQLDRFAKIVMDAGFASPIRMPRGRDILAACGQL 392
>gi|17988150|ref|NP_540784.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M]
gi|148559330|ref|YP_001258119.1| hypothetical protein BOV_0076 [Brucella ovis ATCC 25840]
gi|161618064|ref|YP_001591951.1| radical SAM protein [Brucella canis ATCC 23365]
gi|163842351|ref|YP_001626755.1| radical SAM protein [Brucella suis ATCC 23445]
gi|225626623|ref|ZP_03784662.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo]
gi|256368543|ref|YP_003106049.1| radical SAM protein [Brucella microti CCM 4915]
gi|260563156|ref|ZP_05833642.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 1 str. 16M]
gi|260567277|ref|ZP_05837747.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
4 str. 40]
gi|261215209|ref|ZP_05929490.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
gi|261218081|ref|ZP_05932362.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M13/05/1]
gi|261221308|ref|ZP_05935589.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
B1/94]
gi|261314704|ref|ZP_05953901.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis M163/99/10]
gi|261316737|ref|ZP_05955934.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis B2/94]
gi|261321072|ref|ZP_05960269.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M644/93/1]
gi|261751404|ref|ZP_05995113.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
5 str. 513]
gi|261755967|ref|ZP_05999676.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
3 str. 686]
gi|261759193|ref|ZP_06002902.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
F5/99]
gi|265983258|ref|ZP_06095993.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
83/13]
gi|265987808|ref|ZP_06100365.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis M292/94/1]
gi|265992284|ref|ZP_06104841.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 1 str. Rev.1]
gi|265997270|ref|ZP_06109827.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M490/95/1]
gi|306838909|ref|ZP_07471737.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653]
gi|340789705|ref|YP_004755169.1| radical SAM protein [Brucella pinnipedialis B2/94]
gi|376275151|ref|YP_005115590.1| radical SAM enzyme, Cfr family [Brucella canis HSK A52141]
gi|81851121|sp|Q8YEL1.1|RLMN_BRUME RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829674|sp|A9M6S9.1|RLMN_BRUC2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829675|sp|A5VN22.1|RLMN_BRUO2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829676|sp|B0CII9.1|RLMN_BRUSI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|17983908|gb|AAL53048.1| florfenicol resistance protein [Brucella melitensis bv. 1 str. 16M]
gi|148370587|gb|ABQ60566.1| conserved hypothetical protein TIGR00048 [Brucella ovis ATCC 25840]
gi|161334875|gb|ABX61180.1| radical SAM enzyme, Cfr family [Brucella canis ATCC 23365]
gi|163673074|gb|ABY37185.1| radical SAM enzyme, Cfr family [Brucella suis ATCC 23445]
gi|225618280|gb|EEH15323.1| radical SAM enzyme, Cfr family protein [Brucella ceti str. Cudo]
gi|255998701|gb|ACU47100.1| radical SAM protein [Brucella microti CCM 4915]
gi|260153172|gb|EEW88264.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 1 str. 16M]
gi|260156795|gb|EEW91875.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
4 str. 40]
gi|260916816|gb|EEX83677.1| radical SAM protein [Brucella abortus bv. 3 str. Tulya]
gi|260919892|gb|EEX86545.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
B1/94]
gi|260923170|gb|EEX89738.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M13/05/1]
gi|261293762|gb|EEX97258.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M644/93/1]
gi|261295960|gb|EEX99456.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis B2/94]
gi|261303730|gb|EEY07227.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis M163/99/10]
gi|261739177|gb|EEY27173.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
F5/99]
gi|261741157|gb|EEY29083.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
5 str. 513]
gi|261745720|gb|EEY33646.1| ribosomal RNA large subunit methyltransferase N [Brucella suis bv.
3 str. 686]
gi|262551738|gb|EEZ07728.1| ribosomal RNA large subunit methyltransferase N [Brucella ceti
M490/95/1]
gi|263003350|gb|EEZ15643.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 1 str. Rev.1]
gi|264660005|gb|EEZ30266.1| ribosomal RNA large subunit methyltransferase N [Brucella
pinnipedialis M292/94/1]
gi|264661850|gb|EEZ32111.1| ribosomal RNA large subunit methyltransferase N [Brucella sp.
83/13]
gi|306406025|gb|EFM62276.1| radical SAM enzyme, Cfr family [Brucella sp. NF 2653]
gi|340558163|gb|AEK53401.1| radical SAM protein [Brucella pinnipedialis B2/94]
gi|363403718|gb|AEW14013.1| radical SAM enzyme, Cfr family [Brucella canis HSK A52141]
Length = 411
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 203/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GMS E+ + + Q M LW LY + ++ ++KD + ML++
Sbjct: 30 LIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFA--DMRNISKDLRAMLAQ 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK LF + IE+V IP GR T+C+SSQVGC
Sbjct: 88 HFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIP-EEGRGTLCISSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+QGIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|265994024|ref|ZP_06106581.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 3 str. Ether]
gi|262765005|gb|EEZ10926.1| ribosomal RNA large subunit methyltransferase N [Brucella
melitensis bv. 3 str. Ether]
Length = 411
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 203/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GMS E+ + + Q M LW LY + ++ ++KD + ML++
Sbjct: 30 LIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFA--DMRNISKDLRAMLAQ 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK LF + IE+V IP GR T+C+SSQVGC
Sbjct: 88 HFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIP-EEGRGTLCISSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+QGIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
Length = 370
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 139/345 (40%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L GM +++ + S FR Q L + DD D++ ++K ++ L
Sbjct: 10 LLGMPKAKMEAFFESLGEKRFRATQVLQWIHQRGADDF-----DQMTNMSKVLREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + +S DGTRK + +D+G +ETV+IP + R T+CVSSQ+GC+++C FC
Sbjct: 65 AEIRGPEVVYDESSKDGTRKWVMRMDNGNSVETVLIP-DGERGTLCVSSQIGCSLDCTFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARR-LLSSEVGS---ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G R+LTAAEI+ Q AR+ + E G ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKRGFNRNLTAAEIIGQVWVARKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNVVDAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
N+M+ + S R+VTVSTSG+VP L + ++ +LA+SL+A DE+RN ++P+N+KY
Sbjct: 184 NLMMEDLAYGISKRRVTVSTSGVVPALDKLGEVTDVSLAISLHAPNDELRNQLVPLNKKY 243
Query: 349 KLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
+ L+ R L + K EY ++ GVND + A+ L +++G+PCKINLI FNP
Sbjct: 244 PIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELAVVLRGLPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S F + F+++L AG +R +RGDD AACGQL
Sbjct: 304 FPESDFRRPSMNATRRFQSVLNEAGYIATVRTTRGDDIDAACGQL 348
>gi|157374568|ref|YP_001473168.1| ribosomal RNA large subunit methyltransferase N [Shewanella
sediminis HAW-EB3]
gi|205829886|sp|A8FT67.1|RLMN_SHESH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3]
Length = 373
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 209/372 (56%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +KG R L FTE+ + FR Q LM W +G+ + D + +N
Sbjct: 7 NLLDLDRKGLRAL-----FTEMGE----KPFRADQ-LMKWIYHFGETDF----DAMNNIN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + LS E A + S+DGT K + G +ETV IP R T+CVSSQ
Sbjct: 53 KVLRAKLSARCEVVAPEISSYQKSADGTIKFAINVGQGQEVETVYIP-EEDRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--SSEVGS--ITNVVFMGMGEPL 278
VGCA+ C FC T + G R+LT +EI+ Q + E G ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTAQQGFNRNLTVSEIIGQVWRVANFIGFQKETGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NVI A +IM+ + G S R+VTVSTSG+VP L + + + ALAVS++A DE+R
Sbjct: 172 LNLANVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++P+N+KY L + +R + N +V EYVML +NDS D A L L++
Sbjct: 232 DVLVPVNKKYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|424743184|ref|ZP_18171497.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
gi|422943445|gb|EKU38461.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
Length = 411
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 211/365 (57%), Gaps = 23/365 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
V+P ++V L GMS TEL+++ + FR GQ +M W Y +A E+ ++
Sbjct: 23 VMPAAENKVNLLGMSRTELEKFFEDIGEKKFRAGQ-VMKWIHQYFITDFA----EMTNIS 77
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRG---RTTV 217
+ L + E +A + S DGTRK +F + DG ++ETV+IP R T+
Sbjct: 78 GKLRAKLEQICEIKAPEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGLRKTL 137
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVF 271
C+SSQVGCA++C FC TG+ G +R LT EI+ Q A EV S+TNVV
Sbjct: 138 CISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVM 197
Query: 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLN 331
MGMGEPL N + V+ + IM+ + S R+VT+STSG+VP++ Q + + ALA+SL+
Sbjct: 198 MGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLH 257
Query: 332 ATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK----VLFEYVMLAGVNDSFDDAK 387
A DE+RN ++PIN+KY L LI + + N V EYVML GVND + A+
Sbjct: 258 APNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQ 317
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
++I L++ +P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD A
Sbjct: 318 QMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDA 377
Query: 448 ACGQL 452
ACGQL
Sbjct: 378 ACGQL 382
>gi|344338112|ref|ZP_08769045.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
gi|343802166|gb|EGV20107.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
Length = 376
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 189/317 (59%), Gaps = 8/317 (2%)
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
G++L W +G + TD L++ + L E E R + S+DGT K +
Sbjct: 32 GRSLFKWIHKHGVVDYDAMTD----LSRALRDALRESVEIRLPRIIHDQPSADGTVKWIM 87
Query: 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
L+DG IETV IP R RTT+CVSSQVGCA+NC FC T G R+LT EI Q A
Sbjct: 88 ELEDGQRIETVFIPEGR-RTTICVSSQVGCALNCSFCATATQGFNRNLTVGEIAGQIWHA 146
Query: 256 RRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 315
R + + +NVV MGMGEPL N + V+KA +IM + + ++T+STSG+VP +
Sbjct: 147 TRQTGA---APSNVVMMGMGEPLANFDAVVKAMDIMQDDFAYMIAKTRLTLSTSGIVPNI 203
Query: 316 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375
+ S+ +LAVSL+A D +R+ ++PINRKY L L+ + + ++ +EYVM
Sbjct: 204 YRLREVSDVSLAVSLHAPNDALRDELVPINRKYPLAELLPACKAYVGADKRRRITWEYVM 263
Query: 376 LAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTV 435
L G+NDS AK++I L++GIP K+NLI FNP G+Q+ + E++ FR LAGAG
Sbjct: 264 LDGINDSLAHAKQMIRLLEGIPSKVNLIPFNPFPGNQYGTSPPERIEAFRARLAGAGIFT 323
Query: 436 FLRLSRGDDQMAACGQL 452
R +RGD+ AACGQL
Sbjct: 324 MTRKTRGDEIAAACGQL 340
>gi|294851482|ref|ZP_06792155.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026]
gi|294820071|gb|EFG37070.1| cfr family radical SAM enzyme [Brucella sp. NVSL 07-0026]
Length = 411
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 193/331 (58%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + ++ ++KD + ML++H + + S DGTRK LF
Sbjct: 59 LWHWLYVRGVSDFA--DMRNISKDLRAMLAQHFTIARPEVVEEQISQDGTRKWLFRFPPR 116
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IE+V IP GR T+C+SSQVGC + C FC+TG L R+LT+ EI+ Q + A
Sbjct: 117 GAGRPVEIESVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTA 175
Query: 256 RR--------------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R ++ +E ITN+V MGMGEPL+N E V KA I GL S
Sbjct: 176 RDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSK 235
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + +E LA+SL+A DE+R+ ++PIN+KY L LI+ RE
Sbjct: 236 RRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLAELIKACREYP 295
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML +NDS DDAK L+ L+QGIP KINLI FNP G+ + + E++
Sbjct: 296 GLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQI 355
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + + AG +R RG D +AACGQL
Sbjct: 356 EKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|329848315|ref|ZP_08263343.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19]
gi|328843378|gb|EGF92947.1| radical SAM superfamily protein [Asticcacaulis biprosthecum C19]
Length = 405
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 147/357 (41%), Positives = 204/357 (57%), Gaps = 18/357 (5%)
Query: 103 NINVLPKKG-SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGL 161
NI L + G R LL+ E + +R Q + W YG + TD +
Sbjct: 19 NITGLTRDGLVRALLESGVVEERKAKMRM------QQIWRWIHHYGVTDFDLMTD----I 68
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
KD + + ++ + + S DGTRK L + G+ +E+V IP +CVSS
Sbjct: 69 AKDQRALFADRFTLARPEIVERQISRDGTRKYLIRMGPGIEVESVFIPSVGRAGALCVSS 128
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGE 276
QVGC +NC FC+TG L R+LTAAEIV Q AR L E ++N+VFMGMGE
Sbjct: 129 QVGCTLNCTFCHTGTQKLVRNLTAAEIVAQVQVARDDLGEWPSPKEDRQLSNIVFMGMGE 188
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL+N++NV A +I+ +G+ S R++TVSTSG+VP+L+ N + LA+SL+AT D
Sbjct: 189 PLYNLDNVADAIDIISDNEGIALSRRRITVSTSGVVPELEALGNRTAAMLAISLHATNDT 248
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+R+ I+P+N+KY + L+ +R N +V FEYVML GVNDS +A+ LI L++GI
Sbjct: 249 LRDEIVPLNKKYNIEALMAGIRAYPGLSNARRVTFEYVMLKGVNDSPAEARALIKLLKGI 308
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P KINLI FNP G+ + +D IE F IL AG +R RG D +AACGQL
Sbjct: 309 PAKINLIPFNPWPGTDYQ-CSDWTAIETFAAILNKAGYASPIRTPRGRDILAACGQL 364
>gi|323136337|ref|ZP_08071419.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
gi|322398411|gb|EFY00931.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
Length = 392
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/371 (39%), Positives = 209/371 (56%), Gaps = 29/371 (7%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNK 163
P + L GM+ E+ +R+ + M LW +Y A E+ ++K
Sbjct: 9 PALAEKPSLAGMTRAEIADTLRAFGLPEREIRMRVSQLWHWIYFRG--ARDFGEMLNISK 66
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFML------DDGLVIETVVIPCNRGRTTV 217
+ L R + + S DGTRK L L D G +E V IP R T+
Sbjct: 67 SLRLTLDGAFGLRHPEIVEEQVSVDGTRKWLLRLAPVDAQDKGAEVECVYIP-ESDRGTL 125
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL---------------SSE 262
CVSSQVGC +NC FC+TG L R+LT+AEI+ Q + AR+ L S E
Sbjct: 126 CVSSQVGCTLNCSFCHTGTQKLVRNLTSAEIIGQLLVARQRLGDFPDRERPTDGLVPSGE 185
Query: 263 -VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
V +++N+VFMGMGEPL+N++NV+ A +M GL S R++TVSTSG+VPQ+++ E
Sbjct: 186 GVRAVSNIVFMGMGEPLYNIDNVMAAIEVMADGDGLSLSKRRITVSTSGVVPQIERLGAE 245
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
ALA+SL+A D++RN ++P+NRKY + L++ R+ N ++ FEYVML GVND
Sbjct: 246 CGPALAISLHAVRDDLRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVND 305
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S +A+ L+ L++G+P KINLI FNP G+ + + E + F +I+ AG +R R
Sbjct: 306 SPAEARELVRLLKGVPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPR 365
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 366 GRDILAACGQL 376
>gi|261856771|ref|YP_003264054.1| Cfr family radical SAM protein [Halothiobacillus neapolitanus c2]
gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
Length = 392
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 201/355 (56%), Gaps = 18/355 (5%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAH-----CTDELEGLN 162
P +G+++ L G++ +L+ W +P +A L K W H D++ L
Sbjct: 17 PDRGNKINLLGLTPQQLKDWFVELGEKPFRATQLLK-------WVHQRRVDSFDDMTDLA 69
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L + A RA +++ SSDGTRK L LD G +E V IP + R T+C+SSQ
Sbjct: 70 KSLRDKLRDLACIRAPAIRLDQQSSDGTRKFLLELDGGGSVEMVYIPED-DRATLCISSQ 128
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG---SITNVVFMGMGEPLH 279
VGC++ C FC TGR G R+LT AEIV Q A R++ V +I+NVVFMGMGEPL
Sbjct: 129 VGCSLACTFCSTGRQGFNRNLTTAEIVGQLWLAERMIDRAVNHNRAISNVVFMGMGEPLL 188
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N E+V+ AA IM+ + S R+VT+STSG++P + + ALA+SL+A D +R+
Sbjct: 189 NFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLPVALAISLHAPNDALRD 248
Query: 340 WIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV--QGIP 397
++PIN+KY L L+ + +++EYVML GVND A+ +I L+ +
Sbjct: 249 VLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEMIRLLAPRKDA 308
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
K+NLI FNP S + ++ ++ FR L AG R +RGDD AACGQL
Sbjct: 309 VKVNLIPFNPFPSSGYKRSSRNRIERFRATLKAAGINTVPRKTRGDDIDAACGQL 363
>gi|170742676|ref|YP_001771331.1| radical SAM protein [Methylobacterium sp. 4-46]
gi|205829810|sp|B0UQR1.1|RLMN_METS4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|168196950|gb|ACA18897.1| radical SAM enzyme, Cfr family [Methylobacterium sp. 4-46]
Length = 431
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 193/347 (55%), Gaps = 29/347 (8%)
Query: 129 RSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSD 188
R R GQ L W + G A + + + K K L E + S D
Sbjct: 60 REQRMRTGQ-LWHWINVRG----AASFEAMTNVGKGLKAQLEEAYTLDRPEVVSEQVSRD 114
Query: 189 GTRKILFML--------DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
GTRK L + + G IE V IP N R T+CVSSQVGC + C FC+TG L
Sbjct: 115 GTRKWLLRMPPTGRHDHNRGAEIECVYIPAN-DRGTLCVSSQVGCTLTCSFCHTGTQRLV 173
Query: 241 RHLTAAEIVEQAVFARRLLSSEVGSI---------------TNVVFMGMGEPLHNVENVI 285
R+L+A EI Q V AR L G + +N+VFMGMGEPL+NV+NV+
Sbjct: 174 RNLSAQEITAQLVVARDRLGDWPGQVPPKGTFVPVDGSRFVSNIVFMGMGEPLYNVDNVV 233
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +M +GL S R++TVSTSG+VPQ ++ ++N LA+SL+A D++R+ ++P+N
Sbjct: 234 DAVGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDANAMLAISLHAVRDDLRDELVPLN 293
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
RKY + L+E R N ++ FEYVML GVNDS +A+ L+ L++GIP KINLI F
Sbjct: 294 RKYPIRTLLEACRNYPGVSNARRITFEYVMLKGVNDSDSEARELVRLLKGIPAKINLIPF 353
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NP GS++ + E++ F I+ AG +R RG D +AACGQL
Sbjct: 354 NPWPGSRYECSDWERIERFSEIVFNAGYASPVRTPRGRDILAACGQL 400
>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
Length = 364
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 196/341 (57%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L E A L S DGTRK
Sbjct: 25 FRAKQ-VMRWIHQGG----AESFDEMTDLAKSLRAKLQEKAVVGIPVLMAAQESRDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIPETE-RGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + L + I+NVV MGMGEP+ N +NV+ A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKALGVTPKNERVISNVVMMGMGEPMANYDNVVTALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ D+VR+ I+P+N+KY L L+ L +
Sbjct: 199 GMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLTKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND + A L+ LV+ PCK NLI FNP S + ++++ + F+ IL
Sbjct: 259 TFEYVMLDGVNDKPEHAHELVQLVKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILM 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
AG +R +RGDD AACGQL G +Q R EK+Q
Sbjct: 319 EAGLVTTVRKTRGDDIDAACGQLA--GQVQDKTKR-QEKWQ 356
>gi|377576744|ref|ZP_09805728.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
gi|377542776|dbj|GAB50893.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
Length = 388
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 211/359 (58%), Gaps = 16/359 (4%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEG 160
+NV+ K ++ L ++ +L+++ S +P +A + K +Y DD DE+
Sbjct: 12 VNVVSAKSEKINLLDLNRQQLREFFASLGEKPFRADQVMKWMYHYCCDDF-----DEMTD 66
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK + L E AE RA + + S+DGT K + D LV ETV IP R T+CVS
Sbjct: 67 INKVLRNKLKEIAEIRAPEVAEEQRSADGTIKWAIKIADQLV-ETVYIP-EEDRATLCVS 124
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGE
Sbjct: 125 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKKTGVRPITNVVMMGMGE 184
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TDE
Sbjct: 185 PLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDE 244
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ IMPIN+KY + + +R L N +V EYV+L +ND + A +L ++
Sbjct: 245 IRDRIMPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHINDGTEHAHQLAECLK 304
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCK+NLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 305 DTPCKLNLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|170725898|ref|YP_001759924.1| ribosomal RNA large subunit methyltransferase N [Shewanella woodyi
ATCC 51908]
gi|205829887|sp|B1KKI9.1|RLMN_SHEWM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|169811245|gb|ACA85829.1| radical SAM enzyme, Cfr family [Shewanella woodyi ATCC 51908]
Length = 373
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 209/372 (56%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +KG R L FTE+ + FR Q LM W +G DE+ +N
Sbjct: 7 NLLDLDRKGLRAL-----FTEMGE----KPFRADQ-LMKWIYHFG----VSDFDEMNNIN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L+ E A + S DGT K + G +ETV IP + R T+CVSSQ
Sbjct: 53 KALRAKLNARCEIVAPEISSFQKSEDGTIKFAINVGQGQEVETVYIPED-DRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGEPL 278
VGCA+ C FC T + G R+LT +EI+ Q + E G ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIGFVKETGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N++NVI A +IM+ + G S R+VTVSTSG+VP L + + + ALAVS++A DE+R
Sbjct: 172 LNLKNVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++P+N+KY L + +R + N +V EYVML +NDS D A L L++
Sbjct: 232 DVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
Length = 379
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 198/347 (57%), Gaps = 22/347 (6%)
Query: 120 SFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT-----DELEGLNKDFKKMLSEHAE 174
S EL QW + +P +A L K W H + D + L K F++ L+ A
Sbjct: 12 SVPELIQWCGNLGEKPFRAKQLAK-------WIHQSGMDNFDSMTDLAKSFRQNLNSRAC 64
Query: 175 FRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYT 234
+A S+ S DGTRK LF + +G +ETV IP R R T+CVSSQ GCA+NC+FC T
Sbjct: 65 IKAPSIISDNVSKDGTRKWLFDVGNGDAVETVFIPEER-RGTLCVSSQAGCAVNCRFCST 123
Query: 235 GRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIK 286
G+ G R+L+ AEIV Q A LL E G +TNVV MGMGEPL N + ++
Sbjct: 124 GKQGFSRNLSTAEIVAQLWKANVLLR-EAGDRVYAQERPVTNVVMMGMGEPLLNYDALVP 182
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A D +R+ ++P+N+
Sbjct: 183 ALQLMLDDTAYGLSRRRVTVSTSGVVPFMDRLSQDCPVALAVSLHAPNDALRDHLVPLNK 242
Query: 347 KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
KY L L++ L F + FEYVML GVND + A++L+ + + +PCK NLI FN
Sbjct: 243 KYPLRELLDACLRYLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAKIVPCKFNLIPFN 302
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
P S +T + F +IL GAG +R +RGDD AACGQL
Sbjct: 303 PFPESGLLKSTSPAIKTFVDILGGAGVVTTVRKTRGDDIDAACGQLA 349
>gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
Length = 365
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 136/317 (42%), Positives = 189/317 (59%), Gaps = 8/317 (2%)
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
G+ L W +G + TD L K + +L E E R + S+DGT K +
Sbjct: 32 GRNLFKWMHKHGVVDFDAMTD----LPKSLRTVLLETVEIRLPRILQTHPSADGTVKWVM 87
Query: 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
L DG +ETV IP + R+T+CVSSQVGCA+ C FC T R G R+L+ AEI+ Q A
Sbjct: 88 ELVDGQRVETVFIPEGK-RSTICVSSQVGCALECAFCATARQGFNRNLSVAEIIGQVWHA 146
Query: 256 RRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 315
R L + + TNVV MGMGEPL N E +KA ++M + + ++VT+STSG+VP +
Sbjct: 147 ARQLGA---APTNVVMMGMGEPLANFEAAVKAMDVMQDDLAYMLAKQRVTLSTSGIVPNI 203
Query: 316 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375
+ S+ +LAVSL+A DE+R+ ++PINRKY L LI + + K+ +EYVM
Sbjct: 204 YRLREVSDVSLAVSLHAPNDELRDELVPINRKYPLAELIPACKHYVAGDKRRKITWEYVM 263
Query: 376 LAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTV 435
L G+NDS AK+LI L++G+P K+NLI FNP GS F + +++ FR LA +G
Sbjct: 264 LDGINDSPAHAKQLIRLLEGVPSKVNLIPFNPFTGSDFGTSPPDRVETFRERLARSGIFA 323
Query: 436 FLRLSRGDDQMAACGQL 452
R +RGD+ AACGQL
Sbjct: 324 MTRKTRGDEIAAACGQL 340
>gi|398830689|ref|ZP_10588870.1| 23S rRNA methyltransferase [Phyllobacterium sp. YR531]
gi|398213269|gb|EJM99862.1| 23S rRNA methyltransferase [Phyllobacterium sp. YR531]
Length = 412
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 207/360 (57%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G++ EL + + + QA M +W LY + D+++ +++D +++L
Sbjct: 30 LIGLTRPELAEALIAVGVPERQAKMRVAQVWHWLYVRGV--SNFDDMQNISRDMRELLGR 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
+ + + S+DGTRK LF + IETV IP GR T+C+SSQVGC
Sbjct: 88 NFNIARPEIVEEQISNDGTRKWLFRFPARGAGRPVEIETVYIP-EEGRGTLCISSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------------SEVGSITNVVFM 272
+ C FC+TG L R+LTA EI+ Q + AR L +E ++N+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTAEEILSQLLVARDRLGDFPDRNTPDGTIVPAEGRKVSNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N ENV KA I + GL S R++T+STSG+VP++ + E LA+SL+A
Sbjct: 207 GMGEPLYNFENVKKALLIAADDAGLSLSRRRITLSTSGVVPEIYRAGEEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
TD++R+ ++PIN+KY L L+ R N+ ++ FEYVML GVNDS DDAK L+ +
Sbjct: 267 VTDDLRDMLVPINKKYPLQELLAACRAYPSLSNSKRITFEYVMLKGVNDSLDDAKELVRM 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++GIP KINLI FNP G + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LKGIPAKINLIPFNPWPGVNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|299771620|ref|YP_003733646.1| hypothetical protein AOLE_16930 [Acinetobacter oleivorans DR1]
gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter oleivorans DR1]
Length = 411
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 211/365 (57%), Gaps = 23/365 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
V+P ++V L GMS TEL+++ + FR GQ +M W Y +A E+ ++
Sbjct: 23 VIPAAENKVNLLGMSRTELEKFFEDIGEKKFRAGQ-VMKWIHQYFITDFA----EMTNIS 77
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRG---RTTV 217
+ L + E +A + S DGTRK +F + DG ++ETV+IP R T+
Sbjct: 78 GKLRAKLEQICEIKAPEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGLRKTL 137
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVF 271
C+SSQVGCA++C FC TG+ G +R LT EI+ Q A EV S+TNVV
Sbjct: 138 CISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNVVM 197
Query: 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLN 331
MGMGEPL N + V+ + IM+ + S R+VT+STSG+VP++ Q + + ALA+SL+
Sbjct: 198 MGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLH 257
Query: 332 ATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK----VLFEYVMLAGVNDSFDDAK 387
A DE+RN ++PIN+KY L LI + + N V EYVML GVND + A+
Sbjct: 258 APNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQ 317
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
++I L++ +P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD A
Sbjct: 318 QMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDA 377
Query: 448 ACGQL 452
ACGQL
Sbjct: 378 ACGQL 382
>gi|400287779|ref|ZP_10789811.1| hypothetical protein PPAM21_06876 [Psychrobacter sp. PAMC 21119]
Length = 409
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 220/373 (58%), Gaps = 26/373 (6%)
Query: 102 DNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELE 159
D+I ++ + ++ L GM+ +L ++ +S +P ++ + + +Y + TD ++
Sbjct: 17 DSIKLVDEAQAKTNLLGMTQAQLAEYFKSIGEKPFRSTQVVRWIYQQGV----TDFEQMT 72
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCN----RGRT 215
L+K + LS +A + S DGTRK +F + G ++ETV+IP + GR
Sbjct: 73 NLSKSLRDKLSANACVVPPKVIHRQYSDDGTRKWVFEVTGGSLVETVLIPADDSKINGRK 132
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR-RLLSSEVGS--------- 265
T+CVSSQVGCA++C FC TG+ G +R LTAAEI+ Q A ++ E S
Sbjct: 133 TLCVSSQVGCALDCSFCSTGKQGFERDLTAAEIIGQLWVANASYMTDENDSLENVDHSLW 192
Query: 266 ---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES 322
+TNVV MGMGEPL N + V+ + +M+ + S R+VT+STSG+VP++ Q +
Sbjct: 193 ENNVTNVVMMGMGEPLLNYKPVVGSMELMLSDHAYGLSKRRVTLSTSGVVPKMYQLAQDI 252
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE---ELHFKNNYKVLFEYVMLAGV 379
+ ALA+SL+A DE+RN ++PIN+KY L L+ R +++ ++ V EYVML GV
Sbjct: 253 DVALAISLHAPNDELRNELVPINKKYPLEELMAAARNYVYDVNPRHKKHVTIEYVMLDGV 312
Query: 380 NDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
NDS + A +L+ L+ +P KINLI FNP + + +++ ++ F NIL+ AG +R
Sbjct: 313 NDSNEHAHQLVALLGDLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQ 372
Query: 440 SRGDDQMAACGQL 452
+RGDD AACGQL
Sbjct: 373 TRGDDIDAACGQL 385
>gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
Length = 386
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 214/366 (58%), Gaps = 14/366 (3%)
Query: 96 SDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAH 153
SD NI V K +V L M+ ++++++ S +P +A LM W +G+D +
Sbjct: 2 SDQIQATNIAVAHPKSEKVNLMNMTRPQMREFLASLGEKPFRADQLMKWIYHFGEDNF-- 59
Query: 154 CTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG 213
D + +NK ++ L + AE +A + S+DGT K + + IETV IP
Sbjct: 60 --DNMSNINKVLREKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGEQQ-IETVYIP-EAD 115
Query: 214 RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNV 269
R T+CVSSQVGCA+ C FC T + G R+L AEI+ Q A +++ + V ITNV
Sbjct: 116 RATLCVSSQVGCALACTFCSTAQQGFNRNLNVAEIIGQVWRASKIIGNFGVTGVRPITNV 175
Query: 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVS 329
V MGMGEPL NV NV+ A IM+ + S R+VT+STSG+VP L + + ALA+S
Sbjct: 176 VMMGMGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAIS 235
Query: 330 LNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
L+A DE+R+ I+PIN+KY + +LI ++ + E+ N+ KV EYVML +ND D A
Sbjct: 236 LHAPNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAH 295
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD A
Sbjct: 296 QLAKVLKNTPCKINLIPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDA 355
Query: 448 ACGQLG 453
ACGQL
Sbjct: 356 ACGQLA 361
>gi|451812247|ref|YP_007448701.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778149|gb|AGF49097.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 378
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 206/381 (54%), Gaps = 27/381 (7%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHA----FRPGQALMLWKRLYGDDIWAHCTDELEGLNKD 164
K S V L G+ + L ++ ++ FR GQ L W + D + D + ++
Sbjct: 2 KNNSLVNLMGLDYKSLSLFLEENSIKSGFRTGQ-LQQWIHKFSADSF----DVMTNISNQ 56
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
K L E ++ A+ +K S DGT K LF + IETV IP + R T+C+SSQ G
Sbjct: 57 LKNKLKEISKIEAMPIKSESFSKDGTIKWLFDAGNSNAIETVFIP-EKNRRTLCISSQAG 115
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR----------------LLSSEVGSITN 268
CA+NC FC TGR G R+L+A+EIV Q A++ ++ S ITN
Sbjct: 116 CAVNCAFCATGRQGFNRNLSASEIVGQLWSAQKSINNNSIKNEDLENKSIIKSSNDQITN 175
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
+VFMGMGEPL N V+K+ +++ FS RKVTVSTSG+VP + + + ALAV
Sbjct: 176 IVFMGMGEPLLNYTQVLKSIKLLLDTNAYGFSRRKVTVSTSGVVPMIDKLARDCPVALAV 235
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKR 388
SL+A D +RN ++PIN+KY L LIE+ + + + FEY ML+ +ND+ + +
Sbjct: 236 SLHAANDVLRNKLVPINKKYPLSDLIESCKRYIMKAPRDFITFEYCMLSEINDTDNHLRE 295
Query: 389 LIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAA 448
LI LV I CKINLI FN S+F EK+ F N L +G +R +RGDD AA
Sbjct: 296 LINLVSQIKCKINLIPFNSFANSEFKAPKIEKINSFANKLLNSGIITTVRKTRGDDIYAA 355
Query: 449 CGQL-GNPGAIQAPLLRVPEK 468
CGQL GN I +P K
Sbjct: 356 CGQLAGNVKNITKIAKHIPLK 376
>gi|346993018|ref|ZP_08861090.1| radical SAM protein [Ruegeria sp. TW15]
Length = 395
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 22/368 (5%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 155
++ +P+K +V L G++ +L+ + H QA M +W+ +Y W
Sbjct: 10 DVMTIPRKLPEGKVNLVGLTRDQLRDVLIEHGTPEKQAKMRTGQIWQWIYQ---WGVRDF 66
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
E+ L K ++ L+E+ + S DGTRK L + G +E V IP R
Sbjct: 67 GEMTNLAKAYRAQLAENFLIEIPEVVTRQVSEDGTRKYLCRIAGGHEVEVVYIP-EEDRG 125
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSI 266
T+C+SSQVGC + C FC+TG L R+LTAAEIV Q + AR L E +
Sbjct: 126 TLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLEEWPTPGAPKDETRLL 185
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
+N+V MGMGEPL+N ENV A I + +G+ S R++T+STSG+VP++++ E C L
Sbjct: 186 SNIVLMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIERTAKEIGCLL 245
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
A+S +ATTDE R+ ++PIN+++ + L++ L + N+ ++ FEYVML GVNDS +DA
Sbjct: 246 AISFHATTDETRDVLVPINKRWNIEELLQALASYPNASNSERITFEYVMLDGVNDSDEDA 305
Query: 387 KRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444
RLI ++ IP KINLI FN G+ + +++ ++ F NI+ AG +R +RG+D
Sbjct: 306 HRLIEHIKRHKIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGED 365
Query: 445 QMAACGQL 452
MAACGQL
Sbjct: 366 IMAACGQL 373
>gi|92114968|ref|YP_574896.1| hypothetical protein Csal_2851 [Chromohalobacter salexigens DSM
3043]
gi|123387343|sp|Q1QTL1.1|RLMN_CHRSD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91798058|gb|ABE60197.1| 23S rRNA m(2)A-2503 methyltransferase [Chromohalobacter salexigens
DSM 3043]
Length = 375
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 205/351 (58%), Gaps = 18/351 (5%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKK 167
R L G++ E++ + S FR Q +M W G C D + L+K +
Sbjct: 9 RTNLLGLTREEMESFFVSLGEKKFRAAQ-VMKWIHHEG------CADFASMTNLSKALRT 61
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG-RTTVCVSSQVGCA 226
L E AE R + TS DGTRK + ++DG +ETV+IP G R T+CVSSQVGC+
Sbjct: 62 RLEELAEIRGPRVVYEGTSQDGTRKWVLEVEDGSYVETVLIPAEGGKRRTLCVSSQVGCS 121
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
++C FC TG+ G +R+LT+AEI+ Q A + + +TNVV MGMGEPL N +
Sbjct: 122 LDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFGARRDTTNRPVTNVVMMGMGEPLLNYD 181
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A +M+ + G S R+VT+STSG+VP+L Q +E + +LAVSL+A DE+RN ++
Sbjct: 182 NVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGDELDVSLAVSLHAANDELRNELV 241
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
P+NRKY + L++ R L ++ ++L EY ++ VND A+ L L+ +P KIN
Sbjct: 242 PLNRKYNIATLLDACRRYLAKCDDTRMLTIEYTLIKDVNDQQHHAEELAALLADLPSKIN 301
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
LI FNP S + + +++ F+ L G T +R +RGDD AACGQL
Sbjct: 302 LIPFNPFPHSGYEKPSRNQVMRFQQWLYDLGYTALVRTTRGDDIDAACGQL 352
>gi|414164722|ref|ZP_11420969.1| ribosomal RNA large subunit methyltransferase N [Afipia felis ATCC
53690]
gi|410882502|gb|EKS30342.1| ribosomal RNA large subunit methyltransferase N [Afipia felis ATCC
53690]
Length = 393
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 197/334 (58%), Gaps = 20/334 (5%)
Query: 134 RPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
R +A LW +Y G +A T+ ++KD + L + S+DGTR
Sbjct: 43 RKMRAQQLWHWMYVRGAQTFADMTN----VSKDMRAQLEARFTVDRPEVVAEQVSNDGTR 98
Query: 192 KILFML-DDGL----VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAA 246
K L L DG+ +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA
Sbjct: 99 KWLLRLPGDGVGRAHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAG 157
Query: 247 EIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 298
EIV Q + AR L+ V +TNVV MGMGEPL+N + V A NI++ +G+
Sbjct: 158 EIVGQVMVARDRLNDWVDRETPNGNRLVTNVVMMGMGEPLYNFDAVRDALNIVMDNEGIA 217
Query: 299 FSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
S R++T+STSG+VP + + E+ LA+SL+A DE+RN ++P+NRKY + L+E R
Sbjct: 218 LSRRRITLSTSGVVPNIGRMGEETGVMLAISLHAVRDELRNELVPLNRKYPIAELLEACR 277
Query: 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
N ++ FEYVML GVNDS DDAK L+ L++GIP KINLI FNP GS++ +
Sbjct: 278 NYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKGIPAKINLIPFNPWPGSKYECSDW 337
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
E++ +F + AG + +R RG D +AACGQL
Sbjct: 338 EQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 371
>gi|407893166|ref|ZP_11152196.1| hypothetical protein Dmas2_03745 [Diplorickettsia massiliensis 20B]
Length = 315
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/271 (46%), Positives = 171/271 (63%), Gaps = 5/271 (1%)
Query: 186 SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTA 245
S+DGTRK L L+DG +ETV IP R R T+CVSSQVGCA+NC FC TG+ G R+L
Sbjct: 29 SADGTRKWLLRLEDGNCVETVFIP-ERNRGTLCVSSQVGCALNCSFCSTGKQGFSRNLRI 87
Query: 246 AEIVEQAVFARRLLSSEV----GSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
EI+ Q A +S + +TNVV MGMGEPL N E V+ A N+M+ + FS
Sbjct: 88 DEIIAQVWIAVHFVSKHIEFFSSRVTNVVMMGMGEPLLNFEAVVPAMNLMMDDFAYGFSK 147
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R+VT+STSG+VP LK+ S+ ALA+SL+A DE+RN ++PIN+KY L L+E R
Sbjct: 148 RRVTLSTSGIVPMLKKLSQVSDVALAISLHAPNDELRNELVPINKKYPLRELLEACRHYF 207
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
+ ++ EYV+L G+ND A++LI ++QGI K+NLI FNP + + + ++
Sbjct: 208 SQDSRRRITMEYVLLDGINDQLHHAQQLIQILQGISVKVNLIPFNPFPRTTYRRSPQHQI 267
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FR+ L AG +R +RG D AACGQL
Sbjct: 268 ERFRDYLLKAGLNTIVRKTRGQDIDAACGQL 298
>gi|350561447|ref|ZP_08930285.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780479|gb|EGZ34797.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 377
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 194/334 (58%), Gaps = 11/334 (3%)
Query: 123 ELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKD 182
+ + W FR Q L+ W G +A TD L+K ++ L A +
Sbjct: 22 QFENW-GERGFRATQ-LVKWIHQRGVTDFAAMTD----LSKALRERLGLLATLELPEIAL 75
Query: 183 ILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
S DGT K + L DG IETV IP + R T+C+SSQVGCA++C FC T + G R+
Sbjct: 76 ERRSDDGTVKWVLRLADGNAIETVYIPED-DRGTLCISSQVGCALDCTFCSTAQQGFNRN 134
Query: 243 LTAAEIVEQAVFARRLLSSEVG---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
L+A EI+ Q A R L G ++TNVVFMGMGEPL NVE V+ A ++M+ +
Sbjct: 135 LSAQEIIGQLWLANRRLPIPEGRSRAVTNVVFMGMGEPLANVEAVVDAVDLMLDDNAYGL 194
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R+VTVSTSGLVP L + ++ ALAVSL+A D +R+ ++PINRKY + L++ R
Sbjct: 195 SKRRVTVSTSGLVPALDRLGASTDVALAVSLHAPNDALRDRLVPINRKYPIRELLDACRR 254
Query: 360 ELH-FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
+++V FEYV+LAG+ND A+ LI L++ +PCKINLI FNP GS F +
Sbjct: 255 YTRDGARHHRVTFEYVLLAGINDQPQHARELITLLRDVPCKINLIPFNPFPGSPFVRPSA 314
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F +L AG +R +RGDD AACGQL
Sbjct: 315 NAVQVFEKLLDDAGFVTIVRRTRGDDIDAACGQL 348
>gi|395780478|ref|ZP_10460940.1| ribosomal RNA large subunit methyltransferase N [Bartonella
washoensis 085-0475]
gi|395418824|gb|EJF85141.1| ribosomal RNA large subunit methyltransferase N [Bartonella
washoensis 085-0475]
Length = 409
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 213/389 (54%), Gaps = 30/389 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
+V+ K+ S++ L GM E+ + +++ Q M LW LY + DE+
Sbjct: 20 SVVVKERSKLSLIGMLQDEMVEALKAIGVPERQTRMRVRQLWHWLYVRGV--SNFDEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++M H + S DGTRK L + IETV IP GR
Sbjct: 78 ISKPMQEMFKNHFSIVRPEIIAEQISKDGTRKWLLRFPARGAGRSVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCISSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLVARDCLGDFPDKKTPDGAIVPV 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRTGKE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL+E R N ++ FEYVML VND
Sbjct: 257 IGVMLAISLHAVHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDVND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAKRL+ L++GIP KINLI FNP G+ + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKRLVQLLKGIPAKINLIPFNPWPGTNYQCSDWEQIERFADVVNQAGYASPIRMPR 376
Query: 442 GDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
G D +AACGQL + + LR E+ Q
Sbjct: 377 GRDILAACGQLKS----ASERLRKSERLQ 401
>gi|319941514|ref|ZP_08015841.1| ribosomal RNA large subunit methyltransferase N [Sutterella
wadsworthensis 3_1_45B]
gi|319804988|gb|EFW01827.1| ribosomal RNA large subunit methyltransferase N [Sutterella
wadsworthensis 3_1_45B]
Length = 400
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 155/379 (40%), Positives = 201/379 (53%), Gaps = 24/379 (6%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAH----CT-DELEGLNKDFKK 167
RV L L+ W S +P +A L + W H C +E+ L K F+
Sbjct: 24 RVNLLDFDAAGLKAWCESIGEKPFRARQLTR-------WVHRHLVCDFNEMTDLAKTFRA 76
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L + AE R + SSDGTRK LF + +G +E V IP + R T+C+SSQ GCAM
Sbjct: 77 KLLKLAEIRPPEVIHEKKSSDGTRKWLFAVGNGNAVEAVFIPED-DRGTLCISSQAGCAM 135
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-------SITNVVFMGMGEPLHN 280
C FC TG+ G R+LT AEIV Q A R L + G I+NVV MGMGEPL N
Sbjct: 136 GCLFCSTGKQGFNRNLTTAEIVGQLWTAERELCRDRGITDPNDRVISNVVLMGMGEPLQN 195
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
++ VI A I + + G S R+VTVSTSGLV Q+ + + ALAVSL+A D +R+
Sbjct: 196 LDAVIPAIKIFLDDDGYGLSRRRVTVSTSGLVRQIDKLAEAAPVALAVSLHAADDGLRDK 255
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV--QGIPC 398
+MPIN+K+ LG L+ R L + FEYVML G+NDS DA L LV + +PC
Sbjct: 256 LMPINKKHPLGDLMAACRRYLRVAPRDFITFEYVMLGGINDSLADADHLAALVRREHVPC 315
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 458
K NLI FNP S EK++ F L G +R +RGDD AACGQL G +
Sbjct: 316 KFNLIPFNPFPQSDLEKPDREKVLAFCRRLNELGYVTTVRKTRGDDIDAACGQLA--GEV 373
Query: 459 QAPLLRVPEKFQTAINASI 477
+ R Q A++
Sbjct: 374 RDRTRRAERLAQQKAEAAV 392
>gi|306842623|ref|ZP_07475272.1| radical SAM enzyme, Cfr family [Brucella sp. BO2]
gi|306287268|gb|EFM58756.1| radical SAM enzyme, Cfr family [Brucella sp. BO2]
Length = 411
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 193/331 (58%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + ++ ++KD + ML++H + + S DGTRK LF
Sbjct: 59 LWHWLYVRGVSDFA--DMRNISKDLRAMLAQHFTIARPEVVEEQISQDGTRKWLFRFPPR 116
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IE+V IP GR T+C+SSQVGC + C FC+TG L R+LT+ EI+ Q + A
Sbjct: 117 GAGRPVEIESVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTA 175
Query: 256 RR--------------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R ++ +E ITN+V MGMGEPL+N E V KA I GL S
Sbjct: 176 RDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSK 235
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + +E LA+SL+A DE+R+ ++PIN+KY L LI+ RE
Sbjct: 236 RRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLEQLIKACREYP 295
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML +NDS DDAK L+ L+QGIP KINLI FNP G+ + + E++
Sbjct: 296 GLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQI 355
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + + AG +R RG D +AACGQL
Sbjct: 356 EKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|399544718|ref|YP_006558026.1| ribosomal RNA large subunit methyltransferase N [Marinobacter sp.
BSs20148]
gi|399160050|gb|AFP30613.1| Ribosomal RNA large subunit methyltransferase N [Marinobacter sp.
BSs20148]
Length = 370
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 200/346 (57%), Gaps = 16/346 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALM-LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GM +L+ + S FR Q L + +R GD DE+ ++K + L
Sbjct: 10 LLGMPKAKLEAYFESLGEKRFRATQVLQWIHQRGVGD------FDEMTNMSKPLRDKLKL 63
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
AE R + + DGTRK + +D+G IETV+IP + R T+CVSSQ+GC+++C F
Sbjct: 64 IAEVRGPEVVYDELAKDGTRKWVMRMDNGNNIETVLIP-DGERGTLCVSSQIGCSLDCSF 122
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKA 287
C TG+ G R+LT+AEI+ Q AR+ ITNVV MGMGEPL N +NV+ A
Sbjct: 123 CSTGKRGFNRNLTSAEIIGQVWAARKTFMPYAPGPDRPITNVVMMGMGEPLLNFDNVVDA 182
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
N+M+ + S R+VT+STSG+VP + + ++ +LA+SL+A DE+RN ++PIN+K
Sbjct: 183 MNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLHAANDELRNQLVPINKK 242
Query: 348 YKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
Y + L+ R L + K EY ++AGVND D A+ L +++G+PCKINLI FN
Sbjct: 243 YPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELAEVLRGLPCKINLIPFN 302
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P S + + F+ +L AG +R+ RGDD AACGQL
Sbjct: 303 PFPDSGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACGQL 348
>gi|306846345|ref|ZP_07478896.1| radical SAM enzyme, Cfr family [Brucella inopinata BO1]
gi|306273188|gb|EFM55079.1| radical SAM enzyme, Cfr family [Brucella inopinata BO1]
Length = 411
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 193/331 (58%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + ++ ++KD + ML++H + + S DGTRK LF
Sbjct: 59 LWHWLYVRGVSDFA--DMRNISKDLRAMLAQHFTIARPEVVEEQISQDGTRKWLFRFPPR 116
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IE+V IP GR T+C+SSQVGC + C FC+TG L R+LT+ EI+ Q + A
Sbjct: 117 GAGRPVEIESVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTSEEILAQLLTA 175
Query: 256 RR--------------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R ++ +E ITN+V MGMGEPL+N E V KA I GL S
Sbjct: 176 RDRLGDFPDKDTPDGAMVPAEGRKITNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSK 235
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + +E LA+SL+A DE+R+ ++PIN+KY L LI+ RE
Sbjct: 236 RRITLSTSGVVPEIYRTGDEIGVMLAISLHAVRDELRDILVPINKKYPLEQLIKACREYP 295
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML +NDS DDAK L+ L+QGIP KINLI FNP G+ + + E++
Sbjct: 296 GLSNAKRITFEYVMLKDINDSLDDAKLLVKLLQGIPAKINLIPFNPWPGTNYQCSDWEQI 355
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + + AG +R RG D +AACGQL
Sbjct: 356 EKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|337286227|ref|YP_004625700.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
gi|335359055|gb|AEH44736.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
Length = 349
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 193/331 (58%), Gaps = 17/331 (5%)
Query: 131 HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDIL---TSS 187
A+R G+ + W G +A TD + L ++ K EF L L +I SS
Sbjct: 25 QAYR-GRQVFKWLAQPGIYSFAQMTDLPKALREELSK------EF-CLFLPEIYKEEVSS 76
Query: 188 DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
DGTRK+ L D +IE V+IP T+CVSSQVGCAM C FC T +MG +R+L+ E
Sbjct: 77 DGTRKLALRLKDDELIECVIIP-EEDHYTLCVSSQVGCAMGCAFCLTAKMGFRRNLSPHE 135
Query: 248 IVEQAVFARRLLSSE----VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
I Q + A+ +L E + N+VFMGMGEPL N EN+++A I++ E+G +FS R+
Sbjct: 136 ITAQVLRAKEVLIREGLIKEKPLRNIVFMGMGEPLANYENILRALKILLDEKGFNFSRRR 195
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VTVST GL+PQ+++ + LA+SL+A ++ R +MPIN++Y L LI R
Sbjct: 196 VTVSTVGLIPQMEKLGKDITAKLAISLHAADEDKRTQLMPINKRYPLKELIPACR-RYPL 254
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
+++ FEY+ML GVNDS DA +L L++G+P KINLI FN H F + +E +
Sbjct: 255 PKGWRITFEYLMLKGVNDSSHDAHKLAKLLKGVPAKINLIPFNEHPALPFKCSDEETIFR 314
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
F+ IL G +R S+G D AACGQL
Sbjct: 315 FQGILLSYGYVATIRKSKGRDISAACGQLAT 345
>gi|333985584|ref|YP_004514794.1| ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
gi|333809625|gb|AEG02295.1| Ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
Length = 371
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 196/329 (59%), Gaps = 4/329 (1%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
LQ + +P +A L K +Y + A D++ L+K + L E+ R +
Sbjct: 23 LQAFFVGLGEKPFRATQLLKWIYQE--GAVDFDDMTNLSKSLRSYLKENCCIRTPEIVAE 80
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
+SDGT K G +ETV IP R R T+C+SSQVGCA+ C FC T + G R+L
Sbjct: 81 QLASDGTCKWAMQTHCGNKVETVYIPEER-RATLCISSQVGCALACSFCSTAQQGFNRNL 139
Query: 244 TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
+ AE++ Q A++ L SE ITNVV MGMGEPL N +NV+ A N+M+ + S R+
Sbjct: 140 STAEVIGQLYLAQQRLGSE-HRITNVVMMGMGEPLLNFDNVVAAMNLMMDDFAFGLSKRR 198
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VT+STSG+VP + + + + ++AVSL+A DE+RN ++PIN KY L L++ R
Sbjct: 199 VTISTSGVVPAMHRLHDVCDVSMAVSLHAPNDELRNQLVPINIKYPLTELMDACRAYAKN 258
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
+ FEYVML G+NDS +DA+ L+ L++ +P K+NLI FNP SQ+ + +++
Sbjct: 259 GPRKHITFEYVMLDGINDSMEDARTLVKLLKNVPSKVNLIPFNPFPQSQYRCSEMAAILK 318
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FR+IL AG +R +RGDD AACGQL
Sbjct: 319 FRDILHNAGIVTTIRKTRGDDIDAACGQL 347
>gi|152989129|ref|YP_001346692.1| hypothetical protein PSPA7_1308 [Pseudomonas aeruginosa PA7]
gi|205829634|sp|A6V0V7.1|RLMN_PSEA7 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150964287|gb|ABR86312.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 378
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+Q+ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 7 KVNLLGLTQPQLEQFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KAFAEIRGPEIVSQDISADGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G L+AAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSDLSAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A NIM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMNIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNRLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L++ R + +VL EY +L VND + A+++I L++ PCKINLI
Sbjct: 241 KKYPLTMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKDTPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V +R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHKGGFNVTVRTTRGDDIDAACGQL 348
>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
gi|123748144|sp|Q4FTX0.1|RLMN_PSYA2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71038230|gb|AAZ18538.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter arcticus
273-4]
Length = 409
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 220/377 (58%), Gaps = 26/377 (6%)
Query: 98 AGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD- 156
A ++I ++ + ++ L GM+ +L + +S +P ++ + K +Y + TD
Sbjct: 13 AKTANSIKLVDEAQAKTNLLGMTQAQLADYFKSIGEKPFRSTQVIKWIYQQGV----TDF 68
Query: 157 -ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCN---- 211
++ L+K + LS +A + S DGTRK +F + G ++ETV+IP +
Sbjct: 69 EQMTNLSKSLRDKLSANACVIPPKVIHRQYSDDGTRKWVFEVTGGSLVETVLIPADDSKL 128
Query: 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR-RLLSSEVGS----- 265
GR T+C+SSQVGCA++C FC TG+ G +R LTAAEI+ Q A +S E S
Sbjct: 129 NGRKTLCISSQVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMSDENDSLENID 188
Query: 266 -------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+TNVV MGMGEPL N V+ + +M+ + S R+VT+STSG+VP++ +
Sbjct: 189 HSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYEL 248
Query: 319 LNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE---ELHFKNNYKVLFEYVM 375
E + ALA+SL+A DE+RN ++PIN+KY L L+ R +++ ++ V EYVM
Sbjct: 249 AKELDVALAISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVM 308
Query: 376 LAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTV 435
L GVNDS + A++L+ L+ +P KINLI FNP + + +++ ++ F NIL+ AG
Sbjct: 309 LDGVNDSNEHAEQLVALLGDLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVC 368
Query: 436 FLRLSRGDDQMAACGQL 452
+R +RGDD AACGQL
Sbjct: 369 TIRQTRGDDIDAACGQL 385
>gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
9799]
gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
9799]
Length = 372
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 209/359 (58%), Gaps = 23/359 (6%)
Query: 102 DNINVL--PKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE 159
D IN+L +K R F E+ + FR Q +M W +G D + T+
Sbjct: 3 DKINLLNLDRKAMRAF-----FAEMGE----KPFRADQ-VMKWIYHFGADDFEQMTN--- 49
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
+NK + L+E A A + SSDGT K + +G +ETV IP R T+CV
Sbjct: 50 -INKALRAKLAERAVIVAPEISTSQHSSDGTIKFAIDVGNGQEVETVYIP-ESDRATLCV 107
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA-VFARRL-LSSEVGS--ITNVVFMGMG 275
SSQVGCA+ C FC T + G R+L+ AEI+ Q A+ L L +E G I+NVV MGMG
Sbjct: 108 SSQVGCALECSFCSTAQQGFNRNLSVAEIIGQVWRVAKYLGLKNETGERPISNVVMMGMG 167
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N+ NV+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D
Sbjct: 168 EPLLNLSNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPND 227
Query: 336 EVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
E+R+ ++P+N+KY + + ++R L + N +V EYVML +NDS D A L ++
Sbjct: 228 ELRDVLVPVNKKYNIETFLASVRTYLTKSYANKGRVTVEYVMLDHINDSTDQAHELAKVM 287
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 288 KDTPCKINLIPFNPYPGSPYGKSSNSRIDRFAKVLMEYGMTVIVRKTRGDDIDAACGQL 346
>gi|335420573|ref|ZP_08551611.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
gi|334894932|gb|EGM33117.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
Length = 393
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 208/358 (58%), Gaps = 19/358 (5%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSH---AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKD 164
P K +RV L G+ + + R H AFR Q +M W G ++ TD L+K
Sbjct: 15 PAKTARVNLFGLDREAMSAFFREHGESAFRAKQ-VMQWIYARGVTDFSAMTD----LSKA 69
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL----VIETVVIPCNRGRTTVCVS 220
++ L + AE R + +SDGTRK L + + L IE V IP R T+C+S
Sbjct: 70 LRERLPDIAEIRPPAKIREQKASDGTRKWLLAVTEDLDPDNAIEAVYIP-EADRATLCIS 128
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE-----VGSITNVVFMGMG 275
SQ+GCA++C FC TG+ GL R+LT AEIV Q A L ++ +++N+VFMGMG
Sbjct: 129 SQIGCALDCSFCATGKQGLNRNLTTAEIVGQVWMAEHDLRAQGLVHGERALSNIVFMGMG 188
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N V+ A I++ + G S R+VTVSTSG+VP + + E + ALAVSL+A TD
Sbjct: 189 EPLANYRAVVPAIRILLDDYGFGLSKRRVTVSTSGMVPFMDRLREEVDVALAVSLHAPTD 248
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNY-KVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
++R+ ++PINRKY L L+ + K V++EYV+L GVND+ + A+ L+ L+
Sbjct: 249 DLRDELVPINRKYPLAELMGACDRYVEGKQRRAHVVYEYVLLNGVNDNPEQARGLVKLLA 308
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P KINLI FN GS +T + ++ +F++IL G +R +RGDD AACGQL
Sbjct: 309 DRPAKINLIPFNAFDGSGYTRPDEARIRQFQDILHNKGLRTTVRRTRGDDIDAACGQL 366
>gi|254512050|ref|ZP_05124117.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11]
gi|221535761|gb|EEE38749.1| radical SAM enzyme, Cfr family [Rhodobacteraceae bacterium KLH11]
Length = 397
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 210/368 (57%), Gaps = 22/368 (5%)
Query: 103 NINVLPKK--GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWA-HCT 155
++ +P+K +V L G++ L+ + H QA M +W+ +Y W
Sbjct: 10 DVMTIPRKLPEGKVNLVGLTRDALRAALIEHGTPEKQAKMRTGQIWQWIYQ---WGVRDF 66
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
E+ L K ++ L+EH + S DGTRK L + G +E V IP + R
Sbjct: 67 AEMTNLAKAYRAQLAEHFVIEIPEVVTRQVSEDGTRKYLCRIAGGHEVEVVYIPED-DRG 125
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---------EVGSI 266
T+C+SSQVGC + C FC+TG L R+LTAAEIV Q + AR L E +
Sbjct: 126 TLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDLEEWPTPGAPKDETRLL 185
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
+N+V MGMGEPL+N +NV A I + +G+ S R++T+STSG+VP++ + E C L
Sbjct: 186 SNIVLMGMGEPLYNFDNVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCLL 245
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386
A+S +ATTDE R+ ++PIN+++ + L++ L N+ ++ FEYVML GVNDS DA
Sbjct: 246 AISFHATTDETRDMLVPINKRWNIEELLQALASYPKVSNSERITFEYVMLDGVNDSDADA 305
Query: 387 KRLIGLVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444
RLI ++ IP KINLI FN G+ + +++ ++ F NI+ AG +R +RG+D
Sbjct: 306 HRLIEHIKRHNIPAKINLIPFNEWPGAPYKRSSNNRIRAFANIIYQAGYASPIRKTRGED 365
Query: 445 QMAACGQL 452
MAACGQL
Sbjct: 366 IMAACGQL 373
>gi|378827856|ref|YP_005190588.1| Ribosomal RNA large subunit methyltransferase [Sinorhizobium fredii
HH103]
gi|365180908|emb|CCE97763.1| Ribosomal RNA large subunit methyltransferase [Sinorhizobium fredii
HH103]
Length = 411
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 188/331 (56%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + D++ ++KD ++ML EH + + S DGTRK L
Sbjct: 58 LWHWLYVRGVSDF--DQMSNVSKDMREMLKEHFTVARPEIVEEQVSGDGTRKWLLRFPPR 115
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IETV IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + A
Sbjct: 116 GAGRPVEIETVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILSQLLLA 174
Query: 256 RRLLS--------------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R L +E ITN+V MGMGEPL+N ENV A I GL S
Sbjct: 175 RDRLGDFPERDTPQGTIVPAEGRKITNIVMMGMGEPLYNFENVKTALLIASDGDGLSLSK 234
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + E LA+SL+A DE+R+ ++PIN+KY L L+E R
Sbjct: 235 RRITLSTSGIVPEIYRTGEEIGVMLAISLHAVNDELRDMLVPINKKYPLKELMEACRAYP 294
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML VNDS DAK L+ L++GIP KINLI FNP G+ + + E++
Sbjct: 295 GLSNARRITFEYVMLKDVNDSLQDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQI 354
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F + + AG +R RG D +AACGQL
Sbjct: 355 EAFADFINQAGYASPIRTPRGRDILAACGQL 385
>gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
Length = 377
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 193/333 (57%), Gaps = 11/333 (3%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
L QW FR Q L+ W G + TD +++ ++ L+ E +
Sbjct: 23 LAQWGEPR-FRATQ-LVKWMHQRGVTDFDAMTD----VSRTLRERLARETEIALPEIALE 76
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
S DGT K + L DG IETV IP GR T+C+SSQVGCA++C FC T + G R+L
Sbjct: 77 KASGDGTVKWVLRLADGNAIETVFIP-ESGRGTLCISSQVGCALDCTFCSTAQQGFNRNL 135
Query: 244 TAAEIVEQAVFARRLLSSEVG---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS 300
TAAEI+ Q A + L + G +++NVV MGMGEPL N + V+ A +M + S
Sbjct: 136 TAAEIIGQVWLAMQRLPAPEGRQRAVSNVVLMGMGEPLANYDAVVAACQLMTDDNAYGLS 195
Query: 301 PRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
R+VT+STSGLVP L + ++ ALAVSL+A DE+R+ ++PINRKY + L+E+ R
Sbjct: 196 RRRVTLSTSGLVPALDRLSEHTDVALAVSLHAPNDELRDRLVPINRKYPIARLMESCRRY 255
Query: 361 LHFKNNYK-VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
+ + V FEYV+LAGVND + A +L G+++GIP KINLI FNP G+ F +
Sbjct: 256 VEATGAHSGVTFEYVLLAGVNDRPEHANQLAGVLRGIPGKINLIPFNPFPGAPFDRPAEG 315
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F L AG +R +RGDD AACGQL
Sbjct: 316 DIERFERQLQKAGYVTTVRRTRGDDIDAACGQL 348
>gi|299133126|ref|ZP_07026321.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
gi|298593263|gb|EFI53463.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
Length = 403
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/330 (42%), Positives = 195/330 (59%), Gaps = 18/330 (5%)
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
Q L W + G +A T+ ++KD + L + S+DGTRK L
Sbjct: 57 AQQLWHWMYVRGAQTFADMTN----VSKDMRTQLEARFTVDRPEVVAEQISNDGTRKWLL 112
Query: 196 ML-DDGL----VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
L DG+ +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV
Sbjct: 113 RLPGDGVGRAHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVG 171
Query: 251 QAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
Q + AR L+ V +TNVV MGMGEPL+N + V A NI++ +G+ S R
Sbjct: 172 QVMVARDRLNDWVDRETPNGNRLVTNVVMMGMGEPLYNFDAVRDALNIVMDNEGIALSRR 231
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
++T+STSG+VP + + E+ LA+SL+A DE+RN ++P+N+KY L L++ R
Sbjct: 232 RITLSTSGVVPNIGRMGEETGVMLAISLHAVRDELRNELVPLNKKYPLAQLLDACRNYPG 291
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
N+ ++ FEYVML GVNDS DDAK L+ L++GIP KINLI FNP GS++ + E++
Sbjct: 292 ASNSRRITFEYVMLKGVNDSLDDAKLLVKLLKGIPAKINLIPFNPWPGSKYECSDWEQIE 351
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + AG + +R RG D +AACGQL
Sbjct: 352 KFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|291613878|ref|YP_003524035.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
gi|291583990|gb|ADE11648.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
Length = 359
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 195/338 (57%), Gaps = 12/338 (3%)
Query: 127 WVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDIL 184
W H +P +A + + +Y G+ + D + L ++ L A ++ +
Sbjct: 15 WFAEHGEKPFRARQVLRWIYKGGESDF----DAMSDLAISLREKLKLIACIQSPKVMREE 70
Query: 185 TSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLT 244
T+SDGTRK L + G +ETV IP GR T+CVS+Q GCA++C FC TG+ G R+L+
Sbjct: 71 TASDGTRKWLLDVGTGNAVETVFIP-EEGRGTLCVSTQAGCALDCAFCSTGKQGFNRNLS 129
Query: 245 AAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
AEI+ Q +A R L + +TNVV MGMGEPL N +N + A +M+ + S
Sbjct: 130 TAEIIGQVWWANRELGKDADGNWPVTNVVLMGMGEPLLNFDNTVNALRLMLDDNAYGLSR 189
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R+VTVSTSG+VP + + +E ALA+SL+A D +RN ++PIN+KY L L+ + L
Sbjct: 190 RRVTVSTSGVVPAMDRLRDECPVALAISLHAPNDALRNVLVPINQKYPLQELMAACQRYL 249
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
V FEYVMLAGVNDS A+ LI LV+ +PCK NLI FNP + + + +
Sbjct: 250 EKAPRDFVTFEYVMLAGVNDSVQHARELIELVRDVPCKFNLIPFNPFPQAPYQRSDMPTV 309
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
+ FR++L AG +R RGDD AACGQL G +Q
Sbjct: 310 LRFRDVLMQAGIVTTIRKVRGDDIAAACGQLA--GQVQ 345
>gi|404316942|ref|ZP_10964875.1| radical SAM protein [Ochrobactrum anthropi CTS-325]
Length = 411
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 203/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GMS E+ + + Q M LW LY + ++ ++KD + ML++
Sbjct: 30 LIGMSREEMAEALVKAGVPERQVKMRISQLWHWLYVRGVSDFA--DMRNISKDLRAMLAQ 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK LF + IE+V IP GR T+CVSSQVGC
Sbjct: 88 HFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIP-EEGRGTLCVSSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS +DAK L+ L
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+QGIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSEWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
Length = 388
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 210/358 (58%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + TD +
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTD----I 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 246 RDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMGYGFTTIVRKTRGDDIDAACGQLA 363
>gi|367474570|ref|ZP_09474067.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 285]
gi|365273108|emb|CCD86535.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 285]
Length = 403
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 193/326 (59%), Gaps = 17/326 (5%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--D 198
LW LY A DE+ ++KD + L+E + S+DGTRK L L
Sbjct: 59 LWHWLYFRG--ASSFDEMTSVSKDTRTTLAERFTVDRPEVVAEQISNDGTRKWLLRLPSG 116
Query: 199 DGLV----IETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
DGL +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV Q +
Sbjct: 117 DGLQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVGQIMV 175
Query: 255 ARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV 306
AR L+ ITN+V MGMGEPL+N + V A I+ +G+ S R++T+
Sbjct: 176 ARDRLNDWADRETPHGNRLITNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITL 235
Query: 307 STSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN 366
STSG+VP +K+ E ALA+SL+A DE+RN ++P+NRKY + L++ R+ N
Sbjct: 236 STSGVVPNIKRAGEEIGVALAISLHAVRDELRNELVPLNRKYPIAELLQACRDYPGASNA 295
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
++ FEYVML GVNDS DDA+ L+ L++GIP KINLI FNP GS + + E++ +F
Sbjct: 296 RRITFEYVMLKGVNDSLDDARLLVKLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSE 355
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQL 452
+ AG + +R RG D +AACGQL
Sbjct: 356 YVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|406943843|gb|EKD75743.1| hypothetical protein ACD_44C00034G0002 [uncultured bacterium]
Length = 349
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 189/321 (58%), Gaps = 6/321 (1%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
A+R G L+ W G D + L+K ++ L E +E L + S DGTR
Sbjct: 25 AYR-GTQLLQWIHQKG----VFDFDAMSNLSKPLREKLKEKSEINFLDIALDQLSHDGTR 79
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K LF L +G IETV IP R T+CVSSQVGCA+NC FC TG+ G R LT AEI+ Q
Sbjct: 80 KWLFRLSEGNCIETVFIP-EDSRGTLCVSSQVGCAVNCTFCSTGKQGFSRDLTVAEIIGQ 138
Query: 252 AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL 311
+ A RLL + +ITNVV MGMGEPL N NV++ +I++ + S R+VTVSTSG+
Sbjct: 139 VLLASRLLLPQKKAITNVVMMGMGEPLLNFNNVVQTLDILLDDYAYGLSKRRVTVSTSGI 198
Query: 312 VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371
+P++ + S ALAVSL+A DE+RN ++P+NRKY L L+ + + V+
Sbjct: 199 IPKMIELKKRSPVALAVSLHAPNDELRNVLVPVNRKYPLSELMSVCSDYFKEEPRRAVMM 258
Query: 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431
EYVML +NDS AK+LI L++ K+NLI FNP + + + EK+ +F+ L +
Sbjct: 259 EYVMLDDINDSDLHAKQLIQLLKNKAVKVNLIPFNPFPKTTYHCSPMEKIKKFQKKLMDS 318
Query: 432 GCTVFLRLSRGDDQMAACGQL 452
+R +RG+D ACGQL
Sbjct: 319 DIMTTIRRTRGEDIEGACGQL 339
>gi|393778483|ref|ZP_10366756.1| Radical SAM enzyme, Cfr family [Ralstonia sp. PBA]
gi|392714521|gb|EIZ02122.1| Radical SAM enzyme, Cfr family [Ralstonia sp. PBA]
Length = 390
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 185/327 (56%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W G D + TD L + ++ L+ AE R SSDGTRK
Sbjct: 27 FRARQ-LQRWIHQSGADNFDGMTD----LARSLREKLATRAEIRTPQAITDHISSDGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+LTA EI+ Q
Sbjct: 82 WLIDVGGGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTAGEIIGQL 140
Query: 253 VFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
A + + +G ITNVV MGMGEPL N E V+ A +M+ + S R+VT
Sbjct: 141 WMAEFAMRARLGRGPKDPRVITNVVMMGMGEPLLNYEPVVTAMRLMLDDNAYGLSRRRVT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 201 LSTSGVVPMIDRLARDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLAFAP 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+ FEY ML GVNDS A+ L+ LV +PCK NLI FNP S + +E++ F
Sbjct: 261 RDFITFEYCMLDGVNDSIAHARELVALVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFG 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
+L AG +R +RGDD AACGQL
Sbjct: 321 QVLIDAGIVTTIRKTRGDDIDAACGQL 347
>gi|365884037|ref|ZP_09423117.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 375]
gi|365287402|emb|CCD95648.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 375]
Length = 403
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/326 (43%), Positives = 193/326 (59%), Gaps = 17/326 (5%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--D 198
LW LY A DE+ ++KD + L+E + S+DGTRK L L
Sbjct: 59 LWHWLYFRG--AQSFDEMTSVSKDTRSGLAERFTVDRPEVVAEQISNDGTRKWLLRLPSG 116
Query: 199 DGLV----IETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
DGL +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV Q +
Sbjct: 117 DGLQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVGQIMV 175
Query: 255 ARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV 306
AR L+ ITN+V MGMGEPL+N + V A I+ +G+ S R++T+
Sbjct: 176 ARDRLNDWADRETPHGNRLITNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITL 235
Query: 307 STSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN 366
STSG+VP +++ E ALA+SL+A DE+RN ++P+NRKY + L++ R+ N
Sbjct: 236 STSGVVPNIRRAGEEIGVALAISLHAVRDELRNELVPLNRKYPIAELLQACRDYPGASNA 295
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
++ FEYVML GVNDS DDAK L+ L++GIP KINLI FNP GS + + E++ +F
Sbjct: 296 RRITFEYVMLKGVNDSLDDAKLLVKLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSE 355
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQL 452
+ AG + +R RG D +AACGQL
Sbjct: 356 YVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|365858071|ref|ZP_09398029.1| 23S rRNA m2A2503 methyltransferase [Acetobacteraceae bacterium
AT-5844]
gi|363714792|gb|EHL98275.1| 23S rRNA m2A2503 methyltransferase [Acetobacteraceae bacterium
AT-5844]
Length = 403
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 202/347 (58%), Gaps = 14/347 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S EL + + +P +A LW +Y + TD + + K + L+E
Sbjct: 40 LVGLSREELAAEMVAIGEKPFRAKQLWHWIYHQGV----TDFSRMPSIAKTMQAKLAEKF 95
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFC 232
+ TS+DGTRK +F D +ETV IP R VC+S+QVGC ++C+FC
Sbjct: 96 VVGRPGVTTEQTSTDGTRKWVFAFRDDQKVETVYIPDQEEDRGAVCISTQVGCTLSCKFC 155
Query: 233 YTGRMGLKRHLTAAEIVEQAVFAR----RLLSSEVGS---ITNVVFMGMGEPLHNVENVI 285
+TG L R+L AAEIV Q + AR + GS ++N+V MGMGEPL+N ENV
Sbjct: 156 HTGTQKLVRNLGAAEIVGQFMAARDSYNEWPTPTDGSPRLLSNIVIMGMGEPLYNYENVA 215
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
KA I++ +G+ S R++T+STSG+VP + + E N LAVSL+A +++R+ I+P+N
Sbjct: 216 KAMRIIMDNEGIALSRRRITLSTSGVVPMMDKCGAELNVGLAVSLHAVRNDIRDEIVPLN 275
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
RKY + L+ R N ++ FEYVML GVNDS DA+ L+ L++GIP K+NLI F
Sbjct: 276 RKYPIEELMAACRRYPAASNARRITFEYVMLKGVNDSEADARELVRLLKGIPAKVNLIPF 335
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NP GS + +++ + F I+ AG +R RG D +AACGQL
Sbjct: 336 NPWPGSPYETSSNNAIHRFARIVQEAGYASPIRAPRGRDILAACGQL 382
>gi|114705378|ref|ZP_01438286.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506]
gi|114540163|gb|EAU43283.1| hypothetical protein FP2506_10576 [Fulvimarina pelagi HTCC2506]
Length = 407
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/381 (39%), Positives = 208/381 (54%), Gaps = 34/381 (8%)
Query: 97 DAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDI 150
DA G ++V R L GMS EL + + + Q M LW LY G
Sbjct: 17 DAAGLSPVDV----DERTSLIGMSREELGEALAAVGVPAKQVRMRTAQLWHWLYVRGVSD 72
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIET 205
+AH + ++KD + L + S DGTRK +F + IET
Sbjct: 73 FAH----MANVSKDLRNKLDAAYTIARPEIVTEQVSVDGTRKWVFRFPPRGAGRPVEIET 128
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----- 260
V IP GR T+CVSSQVGC + C FC+TG L R+LTA EIV Q + AR L
Sbjct: 129 VYIP-EEGRGTLCVSSQVGCTLTCTFCHTGTQRLVRNLTAGEIVSQVLLARERLGDFPDV 187
Query: 261 ---------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL 311
SE ++NVV MGMGEPL+N +NV A ++ +GL S R++T+STSG+
Sbjct: 188 DTPAGAIVPSEGRLVSNVVMMGMGEPLYNFDNVATALGVISDGEGLSVSKRRITLSTSGV 247
Query: 312 VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371
VP++ + E+ LA+SL+A DE+R+ ++PIN+KY L L+E R N ++ F
Sbjct: 248 VPEIVRAGEETGVMLAISLHAVNDELRDELVPINKKYPLATLLEACRNYPGLSNAKRITF 307
Query: 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431
EYVML GVNDS +DA+ L+ +++GIP KINLI FNP GS++ + +++ F + + A
Sbjct: 308 EYVMLKGVNDSMEDARNLVRMLKGIPAKINLIPFNPWPGSRYECSDWDQIERFADYVNQA 367
Query: 432 GCTVFLRLSRGDDQMAACGQL 452
G +R RG D AACGQL
Sbjct: 368 GYASPIRTPRGRDIFAACGQL 388
>gi|421528926|ref|ZP_15975477.1| radical SAM protein [Pseudomonas putida S11]
gi|402213563|gb|EJT84909.1| radical SAM protein [Pseudomonas putida S11]
Length = 388
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++++ S FR GQ +M W YG D +A T+ + K ++ L
Sbjct: 7 KINLLGLTLQEMEKFFESIGEKRFRAGQ-VMKWIHHYGVDDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRGPEVVSEDISADGTRKWVVRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|407778767|ref|ZP_11126029.1| radical SAM protein [Nitratireductor pacificus pht-3B]
gi|407299557|gb|EKF18687.1| radical SAM protein [Nitratireductor pacificus pht-3B]
Length = 408
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 201/360 (55%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G+S E+ + + QA M LW LY + ++ ++KD + L
Sbjct: 27 LIGLSRDEMAEALVGLGVPERQARMRVRQLWHWLYVRGVSDFS--QMFNISKDLRATLDA 84
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK L + +ETV IP GR T+C+SSQVGC
Sbjct: 85 HCTIARPEIVEEQISQDGTRKWLMRFPPRGAGRPVDVETVYIP-EEGRGTLCISSQVGCT 143
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------------SEVGSITNVVFM 272
+ C FC+TG L R+LT EI+EQ + AR L +E ITN+V M
Sbjct: 144 LTCTFCHTGTQKLVRNLTPGEILEQLLVARDRLGDFPDADTPDGAIVPAEGRKITNIVMM 203
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N ENV +A I +GL S R++T+STSG+VP++ + E LA+SL+A
Sbjct: 204 GMGEPLYNFENVKQALLIASDGEGLSLSKRRITLSTSGVVPEIYRTGEEIGVMLAISLHA 263
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PINRKY L L++ R N ++ FEYVML GVNDS DDA+ L+ L
Sbjct: 264 VRDELRDVLVPINRKYPLKELLDACRAYPGLSNARRITFEYVMLKGVNDSLDDARALVRL 323
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++GIP KINLI FNP GS + + E++ EF +++ AG +R RG D +AACGQL
Sbjct: 324 LRGIPAKINLIPFNPWPGSDYECSDWEQIEEFADLVNKAGYASPIRTPRGRDILAACGQL 383
>gi|126668577|ref|ZP_01739531.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
gi|126626982|gb|EAZ97625.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
Length = 370
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 200/346 (57%), Gaps = 16/346 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALM-LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GM +L+ + S FR Q L + +R GD DE+ ++K + L
Sbjct: 10 LLGMPKAKLEAYFESLGEKRFRATQVLQWVHQRGVGD------FDEMTNMSKPLRDKLKL 63
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
AE R + + DGTRK + +D+G IETV+IP + R T+CVSSQ+GC+++C F
Sbjct: 64 IAEVRGPEVVYDELAKDGTRKWVMRMDNGNNIETVLIP-DGERGTLCVSSQIGCSLDCSF 122
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKA 287
C TG+ G R+LT+AEI+ Q AR+ ITNVV MGMGEPL N +NV+ A
Sbjct: 123 CSTGKRGFNRNLTSAEIIGQVWAARKTFMPYAPGPDRPITNVVMMGMGEPLLNFDNVVDA 182
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
N+M+ + S R+VT+STSG+VP + + ++ +LA+SL+A DE+RN ++PIN+K
Sbjct: 183 MNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLHAANDELRNQLVPINKK 242
Query: 348 YKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
Y + L+ R L + K EY ++AGVND D A+ L +++G+PCKINLI FN
Sbjct: 243 YPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELAEVLRGLPCKINLIPFN 302
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P S + + F+ +L AG +R+ RGDD AACGQL
Sbjct: 303 PFPESGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACGQL 348
>gi|431806010|ref|YP_007232911.1| ribosomal RNA large subunit methyltransferase N [Liberibacter
crescens BT-1]
gi|430799985|gb|AGA64656.1| Ribosomal RNA large subunit methyltransferase N [Liberibacter
crescens BT-1]
Length = 379
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 194/338 (57%), Gaps = 28/338 (8%)
Query: 137 QALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKI 193
+A LW +Y + + EG+ K+M E ++ I++ S DGTRK
Sbjct: 31 RASQLWNWVY-----VRGSRDFEGMTNISKEMRHFFDERLSIVYPKIMSENISKDGTRKW 85
Query: 194 LFMLDDG-----LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI 248
L G + +ETV IP + R T+CVSSQVGC + C FCYTG L R+LT EI
Sbjct: 86 LLQFPAGGAGRPVEVETVYIP-EKDRGTLCVSSQVGCTLTCSFCYTGTQRLVRNLTVEEI 144
Query: 249 VEQAVFARRLLS--------------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE 294
+ Q + AR LL+ SE I+N+V MGMGEPL+N ENV +A I
Sbjct: 145 LLQILVARNLLNDFVELKTNTEVLVQSEQRKISNIVIMGMGEPLYNFENVKQALLIATDS 204
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
GL FS R+VT+STSG+V Q+ + +E LAVSL+A D++RN ++PIN+KY L L+
Sbjct: 205 SGLSFSKRRVTLSTSGVVSQMSRVGSEIGVMLAVSLHAVRDDLRNILVPINKKYPLATLM 264
Query: 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
E R N ++ FEYVML +NDS +DA LI L++GIP KINLI FNP GS +
Sbjct: 265 EACRNYPSLSNARRITFEYVMLKDINDSRNDAIELIKLLKGIPAKINLIPFNPWPGSNYQ 324
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ EK+ F +I+ AG + +R RG D +AACGQL
Sbjct: 325 CSDPEKINLFADIIKRAGYSSPIRAPRGRDILAACGQL 362
>gi|328953509|ref|YP_004370843.1| ribosomal RNA large subunit methyltransferase N [Desulfobacca
acetoxidans DSM 11109]
gi|328453833|gb|AEB09662.1| Ribosomal RNA large subunit methyltransferase N [Desulfobacca
acetoxidans DSM 11109]
Length = 350
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 203/345 (58%), Gaps = 10/345 (2%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY-GDDIWAHCTDELEGLNKDFKKMLSEHAE 174
LK ++ T+ +Q + S P +A + K L+ G + TD + K+ + +L E +
Sbjct: 7 LKELTQTDFEQLMVSWGQAPFRARQVQKWLFKGATEFNAMTD----IGKEVRHLLQEKSY 62
Query: 175 FRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYT 234
L+L S+DG+ K F L DG VIE+V+IP N T+C+SSQVGCA C+FC T
Sbjct: 63 ISQLALLARRRSADGSEKFSFGLSDGEVIESVLIPEN-DHYTLCLSSQVGCAQGCRFCLT 121
Query: 235 GRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE 294
GR GL R+L+ AEI+ Q + AR L+ +I+N+VFMGMGEPL N N++KA I++
Sbjct: 122 GRRGLTRNLSPAEIINQVLAARSLVGKR-QAISNLVFMGMGEPLDNFANLVKALTIILAP 180
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
GL+FS R+VTVST GL P + + LAVSLNA D +R+ +MP+NRKY L +I
Sbjct: 181 WGLNFSYRRVTVSTVGLAPLIPALGHAIRVNLAVSLNAPNDALRSQLMPVNRKYPLAQII 240
Query: 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
E R + ++ F YV+L G+ND+ A+ L L+QG KINLI FNP F
Sbjct: 241 EACR-AFPLPPHRRITFCYVLLQGINDTPSHARELSRLLQGFRAKINLIPFNPDSCLPFK 299
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
T E ++ F++IL T +R SRG D AACGQL G +Q
Sbjct: 300 RPTPEAVLAFQDILIQKHYTTLIRESRGADISAACGQLA--GEVQ 342
>gi|395789061|ref|ZP_10468591.1| ribosomal RNA large subunit methyltransferase N [Bartonella
taylorii 8TBB]
gi|395431195|gb|EJF97222.1| ribosomal RNA large subunit methyltransferase N [Bartonella
taylorii 8TBB]
Length = 409
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/374 (39%), Positives = 207/374 (55%), Gaps = 26/374 (6%)
Query: 102 DNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDE 157
D NV+ K+ S++ L G+S E+ Q +++ Q M +W LY + +E
Sbjct: 17 DTDNVVVKENSKLSLIGLSQDEMMQALKTVGVPERQIRMRVRQIWHWLYVRGV--SNFNE 74
Query: 158 LEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNR 212
+ ++K ++ML H + S DGTRK L + IETV IP
Sbjct: 75 MLNISKPMQEMLKSHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIP-EE 133
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----------- 261
GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 134 GRGTLCLSSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLIARDCLGDFPDKNTPDGAI 193
Query: 262 ---EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP + +
Sbjct: 194 VPVEGRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRT 253
Query: 319 LNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG 378
E LA+SL+A D +R+ ++PIN+KY L LL+ R N ++ FEYVML
Sbjct: 254 GEEIGVMLAISLHAVHDTLRDMLVPINKKYPLALLMNACRNYPGLSNAKRITFEYVMLKD 313
Query: 379 VNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 438
+NDS +DAK+LI L++GIP KINLI FNP GS + + E++ F +++ AG +R
Sbjct: 314 INDSLEDAKQLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVINKAGYASPIR 373
Query: 439 LSRGDDQMAACGQL 452
+ RG D +AACGQL
Sbjct: 374 IPRGRDILAACGQL 387
>gi|339485847|ref|YP_004700375.1| radical SAM protein [Pseudomonas putida S16]
gi|338836690|gb|AEJ11495.1| radical SAM protein [Pseudomonas putida S16]
Length = 381
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++++ S FR GQ +M W YG D +A T+ + K ++ L
Sbjct: 7 KINLLGLTLQEMEKFFESIGEKRFRAGQ-VMKWIHHYGVDDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRGPEVVSEDISADGTRKWVVRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
Length = 366
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A DE+ L K + L ++A +L S DGTRK
Sbjct: 25 FRAKQ-VMRWIHQSG----AQTFDEMTDLAKALRAKLEDNAVIGIPALMTSQESRDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+LTAAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIP-EAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + L + I+NVV MGMGEP+ N +NVI A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKALGVTPKNERVISNVVMMGMGEPMANYDNVITALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + ++ ALAVSL+A+ D+VR+ I+P+N+KY L L+ L +
Sbjct: 199 GMVPQMDRLKDDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLAKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND + A+ L+ LV+ PCK NLI FNP S + ++++ + F+ IL
Sbjct: 259 TFEYVMLDGINDKPEHARELVQLVKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILM 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLR 464
A +R +RGDD AACGQL G +Q R
Sbjct: 319 EADLVTTVRKTRGDDIDAACGQLA--GQVQDKTKR 351
>gi|431800905|ref|YP_007227808.1| radical SAM protein [Pseudomonas putida HB3267]
gi|430791670|gb|AGA71865.1| radical SAM protein [Pseudomonas putida HB3267]
Length = 378
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++++ S FR GQ +M W YG D +A T+ + K ++ L
Sbjct: 4 KINLLGLTLQEMEKFFESIGEKRFRAGQ-VMKWIHHYGVDDFAAMTN----VGKALREKL 58
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 59 EAVAEIRGPEVVSEDISADGTRKWVVRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 117
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 118 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVI 177
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 178 AAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPIN 237
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 238 KKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 297
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 298 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 345
>gi|296534699|ref|ZP_06897089.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
gi|296264972|gb|EFH11207.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
Length = 409
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 202/354 (57%), Gaps = 28/354 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S EL + + +P +A LW +Y + TD ++ + K + L+E
Sbjct: 44 LVGLSREELVAEMVAIGEKPFRAKQLWHWIYHQGV----TDFSQMSTIAKAMQGKLAERF 99
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFC 232
+ TS+DGTRK LF DG +ETV IP R VCVS+QVGC ++C+FC
Sbjct: 100 VVGRPGVTTEQTSTDGTRKWLFGFRDGQQVETVYIPDPEEDRGAVCVSTQVGCTLSCKFC 159
Query: 233 YTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVVFMGMGEPL 278
+TG L R+L AAEIV Q + AR RLLS+ +V MGMGEPL
Sbjct: 160 HTGTQKLVRNLGAAEIVGQFMAARDSYGEWPSPTDGTPRLLST-------IVIMGMGEPL 212
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
+N ENV KA I++ +G+ S R++T+STSG+VP + + E LAVSL+A +++R
Sbjct: 213 YNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGAELGVGLAVSLHAVRNDIR 272
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
+ I+P+NRKY + L+ R N ++ FEYVML GVNDS DA+ L+ L+QGIP
Sbjct: 273 DEIVPLNRKYPIEELMAACRRYPGASNARRITFEYVMLKGVNDSEADARELVRLLQGIPA 332
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
K+NLI FNP GS + +++ + F I+ AG +R RG D +AACGQL
Sbjct: 333 KVNLIPFNPWPGSPYETSSNNAIHRFARIVQEAGYASPIRTPRGRDILAACGQL 386
>gi|398355543|ref|YP_006401007.1| ribosomal RNA large subunit methyltransferase N [Sinorhizobium
fredii USDA 257]
gi|390130869|gb|AFL54250.1| ribosomal RNA large subunit methyltransferase N [Sinorhizobium
fredii USDA 257]
Length = 411
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 189/331 (57%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + D++ ++KD ++ML EH + + S DGTRK L
Sbjct: 58 LWHWLYVRGVSDF--DQMSNVSKDMREMLKEHFTIARPEIVEEQVSGDGTRKWLLRFPPR 115
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IETV IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + A
Sbjct: 116 GAGRPVEIETVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILSQLLLA 174
Query: 256 RR--------------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R ++ +E ITNVV MGMGEPL+N ENV A I GL S
Sbjct: 175 RDRLGDFPERDTPQGAIVPAEGRKITNVVMMGMGEPLYNFENVKTALLIASDGDGLSLSK 234
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + E LA+SL+A DE+R+ ++PIN+KY L L++ R
Sbjct: 235 RRITLSTSGIVPEIYRTGEEIGVMLAISLHAVNDELRDMLVPINKKYPLKELMDACRAYP 294
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML VNDS DAK L+ L++GIP KINLI FNP G+ + + E++
Sbjct: 295 GLSNARRITFEYVMLKDVNDSLQDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQI 354
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F + + AG +R RG D +AACGQL
Sbjct: 355 EAFADFINQAGYASPIRTPRGRDILAACGQL 385
>gi|354593754|ref|ZP_09011797.1| radical SAM enzyme, Cfr family protein [Commensalibacter intestini
A911]
gi|353672865|gb|EHD14561.1| radical SAM enzyme, Cfr family protein [Commensalibacter intestini
A911]
Length = 404
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 206/362 (56%), Gaps = 26/362 (7%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDF 165
VLP R L G+S EL+Q + + + LW +Y A +E+ + K
Sbjct: 36 VLPD--GRTELVGLSRAELEQLLVDMGEQRFRTKQLWHWIYHKG--ATDFNEMTSIGKPL 91
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG-RTTVCVSSQVG 224
+ L + + TS D TRK LF DG ETV IP R R VC+SSQVG
Sbjct: 92 RAKLIDRCVISRPKVVTEQTSKDETRKFLFQFRDGQEAETVYIPDRRADRGAVCISSQVG 151
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR--------------RLLSSEVGSITNVV 270
C ++C+FC+TG L R+L ++EI+ Q + AR RLLS+ +V
Sbjct: 152 CTLSCRFCHTGTQNLVRNLGSSEIISQFMAARDSYGEWPTPTADRPRLLST-------IV 204
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N EN+ KA I + ++G+ S R++T+STSG+VP + Q ++ LA+SL
Sbjct: 205 LMGMGEPLYNYENIAKAMRIAMDDEGIGISRRRITLSTSGVVPMMDQCGHDLAVNLAISL 264
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++RN I+P+NRKY + ++ R N+ ++ FEY+ML G+NDS DA+ L+
Sbjct: 265 HAVRDDLRNEIVPLNRKYPIKDVLAACRRYPAASNSRRITFEYIMLRGINDSEADARELV 324
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++GI K+NLI FNP GS + P+ E++ +F +I+ AG + +R RG D +AACG
Sbjct: 325 RLLKGIHAKVNLIPFNPWPGSDYKPSKGEQVQKFADIIMQAGYSSPIRTPRGRDILAACG 384
Query: 451 QL 452
QL
Sbjct: 385 QL 386
>gi|225850129|ref|YP_002730363.1| ribosomal RNA large subunit methyltransferase N [Persephonella
marina EX-H1]
gi|225644821|gb|ACO03007.1| radical SAM enzyme, Cfr family [Persephonella marina EX-H1]
Length = 353
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 210/345 (60%), Gaps = 11/345 (3%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA 173
+ +K +++ +L++WV+ ++ +A + K +Y + + DE+ L+K+ + L E+
Sbjct: 2 ISIKDLNYNQLERWVKDQGWKKFRAKQIAKWIYNKKV--NSYDEMTDLSKEVRNYLKENT 59
Query: 174 EFRALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
+ L L SS DG+ K L+ L+DG +E+V IP RG T+CVS+QVGCA+ C+FC
Sbjct: 60 KLNVLELVTFERSSQDGSIKFLWRLEDGHTVESVFIP-ERGHNTLCVSTQVGCAVGCKFC 118
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
+T + GL R+LT AEIV+Q + ++ + E I+NVV+MGMGEPL N ENV ++ I+
Sbjct: 119 FTTKDGLIRNLTTAEIVDQYIQSQIFVGPE-NRISNVVYMGMGEPLANYENVKRSVQILT 177
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESN---CALAVSLNATTDEVRNWIMPINRKYK 349
++ L S RK+T+S+SG++ Q+K+ ++ + LAVSLNA+ + R IMPI+
Sbjct: 178 DDRMLGLSNRKITISSSGIIHQIKKMYDDPSFPQVRLAVSLNASDQKTRERIMPISETNS 237
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV--QGIPCKINLISFNP 407
L L++TL L K ++++ EYV++ +ND +DA RL L+ K+NLI FNP
Sbjct: 238 LEDLMKTL-NRLPVKTGFRIMLEYVLIKDINDRPEDAHRLARLIGKNKKRYKVNLIPFNP 296
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ GS F E++ +F IL F+R S+G D AACGQL
Sbjct: 297 YPGSDFERPEKERVDQFHKILWQYNIGAFVRWSKGSDISAACGQL 341
>gi|153007435|ref|YP_001368650.1| radical SAM protein [Ochrobactrum anthropi ATCC 49188]
gi|205829793|sp|A6WV17.1|RLMN_OCHA4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151559323|gb|ABS12821.1| radical SAM enzyme, Cfr family [Ochrobactrum anthropi ATCC 49188]
Length = 411
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 203/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GMS E+ + + Q M LW LY + ++ ++KD + ML++
Sbjct: 30 LIGMSREEMAEALIKAGVPERQVKMRISQLWHWLYVRGVSDFA--DMRNISKDLRAMLAQ 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK LF + IE+V IP GR T+CVSSQVGC
Sbjct: 88 HFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIP-EEGRGTLCVSSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS +DAK L+ L
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+QGIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSEWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|126175195|ref|YP_001051344.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS155]
gi|386341948|ref|YP_006038314.1| radical SAM enzyme, Cfr family [Shewanella baltica OS117]
gi|205829878|sp|A3D6W2.1|RLMN_SHEB5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|125998400|gb|ABN62475.1| radical SAM enzyme, Cfr family [Shewanella baltica OS155]
gi|334864349|gb|AEH14820.1| radical SAM enzyme, Cfr family [Shewanella baltica OS117]
Length = 373
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 208/372 (55%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +K R L M FR Q LM W +G +E+ +N
Sbjct: 7 NLLDLDRKAMRALFADMG---------EKPFRADQ-LMKWLYHFG----VSDFEEMTNIN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K ++ L+ E A + S+DGT K + G +ETV IP + R T+CVSSQ
Sbjct: 53 KVLRQKLAARCEIVAPEISSFQKSTDGTIKFAINVGQGQEVETVYIPED-DRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--SSEVGS--ITNVVFMGMGEPL 278
VGCA+ C FC TG+ G R+LT +EIV Q L + + G ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NVI A +IM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE+R
Sbjct: 172 LNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++PIN+KY+L + +R + N +V EYVML +NDS D A L L++
Sbjct: 232 DILVPINKKYQLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|163867325|ref|YP_001608519.1| hypothetical protein Btr_0020 [Bartonella tribocorum CIP 105476]
gi|205829668|sp|A9IL44.1|RLMN_BART1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161016966|emb|CAK00524.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 408
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 205/371 (55%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
N++ K+ S++ L G+S E+ Q +++ Q M LW LY + DE+
Sbjct: 20 NIVVKESSKLSLIGLSQDEIVQALKTVGVPERQTRMRARQLWHWLYVRGV--SNFDEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++ L H + S DGTRK L + IETV IP GR
Sbjct: 78 ISKVMQETLKHHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKNTPDGAIVPV 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E +TN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP + + E
Sbjct: 197 EGRKVTNIVMMGMGEPLYNYEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D VR+ ++PIN+KY L LL++ R N ++ FEYVML +ND
Sbjct: 257 IGVMLAISLHAVHDTVRDMLVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDIND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R R
Sbjct: 317 SLDDAKRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRTPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
ATCC BAA-895]
gi|205829699|sp|A8AD69.1|RLMN_CITK8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
Length = 388
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 211/357 (59%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLN 162
V+P K ++ L ++ +++++ + +P +A + K +Y +C+D E+ +N
Sbjct: 14 VVPDKNGKINLLDLNRQQMREFFKELGEKPFRADQVMKWMY-----HYCSDNFDEMTDIN 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQ
Sbjct: 69 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQ 126
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R
Sbjct: 187 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PINRKY + ++ +R L N +V EYVML +ND + A +L L++
Sbjct: 247 DEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLAELLKDT 306
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|39933473|ref|NP_945749.1| hypothetical protein RPA0396 [Rhodopseudomonas palustris CGA009]
gi|39647319|emb|CAE25840.1| Cfr family protein [Rhodopseudomonas palustris CGA009]
Length = 424
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 196/333 (58%), Gaps = 17/333 (5%)
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 193
R +A LW +Y A E+ ++K+ + ML+EH + S+DGTRK
Sbjct: 73 RKMRAQQLWHWMYVRG--ARDFSEMTNVSKEMRAMLAEHFTVDRPEVVAEQISADGTRKW 130
Query: 194 LFMLDDG------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
L L G +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA E
Sbjct: 131 LLRLPSGGDGQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCAFCHTGTQRLVRNLTAGE 189
Query: 248 IVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
IV Q + AR L + ITN+V MGMGEPL+N + V A I+ +G+
Sbjct: 190 IVGQVMVARDRLGDWIDRETPNGNRLITNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGI 249
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R++T+STSG+VP +K+ +E LA+SL+A DE+R+ ++P+NRKY L L++ R+
Sbjct: 250 SRRRITLSTSGVVPNIKRTGDEIGVMLAISLHAVRDELRDELVPLNRKYPLKELLQACRD 309
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N ++ FEYVML GVNDS DDA++L+ L++GIP KINLI FNP GS + + +
Sbjct: 310 YPGASNARRITFEYVMLKGVNDSLDDARKLVQLLKGIPAKINLIPFNPWPGSNYECSDWD 369
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ +F + AG + +R RG D +AACGQL
Sbjct: 370 QIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 402
>gi|409399860|ref|ZP_11250068.1| iron-sulfur (Fe-S) cluster redox enzyme [Acidocella sp. MX-AZ02]
gi|409131005|gb|EKN00732.1| iron-sulfur (Fe-S) cluster redox enzyme [Acidocella sp. MX-AZ02]
Length = 387
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 205/356 (57%), Gaps = 12/356 (3%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKD 164
++LP G R L+ G+S EL + V + +P +A LW +Y + + + K
Sbjct: 25 HILPD-GRRDLV-GLSREELLEEVAAFGEKPFRAKQLWHWIYHQGVRDFAA--MSNIAKP 80
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQV 223
++ L++ + S D TRK LF D +ETV IP + R VC+SSQV
Sbjct: 81 LQEKLAQRFVIGRPEVATDQLSKDETRKFLFRFRDHEAVETVYIPDRQEDRGAVCLSSQV 140
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---SEVGS----ITNVVFMGMGE 276
GC ++C+FC+TG L R+L+AAEIV Q + AR S G ++ +V MGMGE
Sbjct: 141 GCTLSCRFCHTGTQRLSRNLSAAEIVGQFMAARDAYGEWPSPRGETPRLLSTIVLMGMGE 200
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL+N ENV KA I++ +G+ S R++T+STSG+VP + + E LAVSL+A D+
Sbjct: 201 PLYNYENVAKAMKIIMDGEGIALSRRRITLSTSGVVPMMDRAGEELGVNLAVSLHAVRDD 260
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+R+ ++P+NRKY + LIE N ++ FEYVML GVNDS +A L+ L+ G+
Sbjct: 261 LRDELVPLNRKYPIKELIEACHRYPGASNARRITFEYVMLRGVNDSEAEAHELVRLIAGL 320
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P K+NLI FNP GS + P+T E + +F I+ AG +R RG D +AACGQL
Sbjct: 321 PAKVNLIPFNPWPGSAYQPSTPEALKKFAAIVMQAGYASPIRTPRGRDILAACGQL 376
>gi|205829897|sp|Q6NCS3.2|RLMN_RHOPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 399
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 196/333 (58%), Gaps = 17/333 (5%)
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 193
R +A LW +Y A E+ ++K+ + ML+EH + S+DGTRK
Sbjct: 48 RKMRAQQLWHWMYVRG--ARDFSEMTNVSKEMRAMLAEHFTVDRPEVVAEQISADGTRKW 105
Query: 194 LFMLDDG------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
L L G +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA E
Sbjct: 106 LLRLPSGGDGQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCAFCHTGTQRLVRNLTAGE 164
Query: 248 IVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
IV Q + AR L + ITN+V MGMGEPL+N + V A I+ +G+
Sbjct: 165 IVGQVMVARDRLGDWIDRETPNGNRLITNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGI 224
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R++T+STSG+VP +K+ +E LA+SL+A DE+R+ ++P+NRKY L L++ R+
Sbjct: 225 SRRRITLSTSGVVPNIKRTGDEIGVMLAISLHAVRDELRDELVPLNRKYPLKELLQACRD 284
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N ++ FEYVML GVNDS DDA++L+ L++GIP KINLI FNP GS + + +
Sbjct: 285 YPGASNARRITFEYVMLKGVNDSLDDARKLVQLLKGIPAKINLIPFNPWPGSNYECSDWD 344
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ +F + AG + +R RG D +AACGQL
Sbjct: 345 QIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 377
>gi|91975189|ref|YP_567848.1| hypothetical protein RPD_0709 [Rhodopseudomonas palustris BisB5]
gi|123763075|sp|Q13D92.1|RLMN_RHOPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91681645|gb|ABE37947.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 398
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 206/365 (56%), Gaps = 24/365 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQ----ALMLWKRLYGDDIWAHCTDELEGL 161
V P K S L G+S EL + + P Q A LW +Y A E+ +
Sbjct: 18 VPPAKPS---LIGLSRAELAERLGHIGVAPAQRKMRAQQLWNWMYLRG--ARDFSEMTNV 72
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRT 215
+K+ + LS+H + S+DGTRK L L G +E V IP R
Sbjct: 73 SKEMRAQLSDHFTVDRPEVVAEQISNDGTRKWLLRLPSGDDVQKAHEVECVYIP-ETDRG 131
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------IT 267
T+CVSSQVGC +NC FC+TG L R+LTA EI+ Q + AR L+ V +T
Sbjct: 132 TLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWVDRETPNGNRLVT 191
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N E V A I+ +G+ S R+VT+STSG+VP + + E LA
Sbjct: 192 NIVMMGMGEPLYNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIIRTGEEIGVMLA 251
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A DE+R+ ++P+NRKY L L++ R+ N ++ FEYVML GVNDS DDA+
Sbjct: 252 ISLHAVRDELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAR 311
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
RL+ L++GIP KINLI FNP GS + + +++ +F + AG + +R RG D +A
Sbjct: 312 RLVQLLKGIPAKINLIPFNPWPGSAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILA 371
Query: 448 ACGQL 452
ACGQL
Sbjct: 372 ACGQL 376
>gi|451982040|ref|ZP_21930374.1| Ribosomal RNA large subunit methyltransferase N [Nitrospina
gracilis 3/211]
gi|451760705|emb|CCQ91650.1| Ribosomal RNA large subunit methyltransferase N [Nitrospina
gracilis 3/211]
Length = 341
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 188/298 (63%), Gaps = 4/298 (1%)
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTT 216
++ L+K +K L E R + S DG+ K LF L+DG +E + +P R T
Sbjct: 43 DMTNLSKALRKKLEERFYIRLPRIVMSTPSRDGSIKYLFGLEDGQEVEAIWMP-ETDRKT 101
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE 276
+C+S+QVGC + C FC T MGLKRHLT+AEI+ Q A +E ++N+VFMGMGE
Sbjct: 102 LCISTQVGCRLACSFCLTASMGLKRHLTSAEIIGQ-YLAVNADHTEENRVSNIVFMGMGE 160
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTD 335
PL N + V A +MV + L S RK+T+STSGLV ++++F +E+ + LA+SLNAT +
Sbjct: 161 PLDNYDAVCDALRLMVSPEALRISTRKITLSTSGLVDRIERFKSENLHVNLAISLNATDN 220
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ IMPINRKY + +L++ LR K + ++ FEYVML G+ND+ +DA+RL L++
Sbjct: 221 PTRDQIMPINRKYPIEVLLDCLRT-YPLKPSRRLTFEYVMLKGINDTDEDARRLAKLLRN 279
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
IP KINLI FN + + P +++ F++ L G +VF+R +RG D + ACGQL
Sbjct: 280 IPSKINLIPFNAFDSADYQPPAPQRVQAFQDYLIGKHYSVFVRKNRGTDILGACGQLA 337
>gi|395235042|ref|ZP_10413262.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
gi|394730327|gb|EJF30185.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
Length = 387
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 208/356 (58%), Gaps = 14/356 (3%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNK 163
V+ K ++ L ++ +L+++ +P +A +M W Y D + DE+ +NK
Sbjct: 13 VVSNKAEKINLLDLNRQQLREFFAELGEKPFRADQVMKWMYHYCSDDF----DEMTDINK 68
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L E AE RA + + S+DGT K + D LV ETV IP R T+CVSSQV
Sbjct: 69 VLRNKLKEIAEIRAPEVAEEQRSADGTIKWAIKIADQLV-ETVYIP-EEDRATLCVSSQV 126
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEPL
Sbjct: 127 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKKTGVRPITNVVMMGMGEPLL 186
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+
Sbjct: 187 NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRD 246
Query: 340 WIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
IMPIN+KY + + +R L N +V EYV+L VND + A +L ++ P
Sbjct: 247 EIMPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHVNDGTEHAHQLAECLKDTP 306
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 CKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 362
>gi|381400771|ref|ZP_09925691.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
gi|380834257|gb|EIC14105.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
Length = 364
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/341 (42%), Positives = 198/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G + + TD L K + L + AE +L S DGTRK
Sbjct: 25 FRAKQ-VMRWIHQGGAENFEQMTD----LAKSLRAKLEQQAEVGIPALMTSQESKDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+L+AAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIPETE-RGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + L + I+NVV MGMGEPL N +NVI A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKALGVTPKNERVISNVVMMGMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ D+VR+ I+P+N+KY L L+ L +
Sbjct: 199 GMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND + A+ L+ LV+ PCK NLI FNP S + ++++ + F+ IL
Sbjct: 259 TFEYVMLDGVNDKPEHARELVELVKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILM 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
A +R +RGDD AACGQL G ++ R EK+Q
Sbjct: 319 EANLVTTVRKTRGDDIDAACGQLA--GQVKDKTKR-QEKWQ 356
>gi|395783682|ref|ZP_10463531.1| ribosomal RNA large subunit methyltransferase N [Bartonella
melophagi K-2C]
gi|395425804|gb|EJF91964.1| ribosomal RNA large subunit methyltransferase N [Bartonella
melophagi K-2C]
Length = 395
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 152/385 (39%), Positives = 215/385 (55%), Gaps = 30/385 (7%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKD 164
K+ S++ L G+S E+ Q + Q M LW LY + +H DE+ + K
Sbjct: 10 KERSKLSLIGLSRDEMVQALEEIDVPKHQTRMRVRQLWHWLYVRGV-SH-FDEMLNIAKP 67
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCV 219
++ML +H + + TS+DGT K L + IETV IP GR T+C+
Sbjct: 68 MRRMLQDHFSIARPEIVEEQTSNDGTCKWLLRFPARGAGKPVEIETVYIP-EEGRGTLCI 126
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------------SSEVGS 265
SSQVGC + C FC+TG L R+LTA EI+ Q + AR L S E
Sbjct: 127 SSQVGCTLTCSFCHTGTQTLVRNLTAEEILAQLLVARDRLGDFPEKNTPNGAAVSIEGRK 186
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
+TN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E
Sbjct: 187 VTNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGKEIGVM 246
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LA+SL+A D +R+ ++PIN+KY+L LL++ R N ++ FEYVML VNDS DD
Sbjct: 247 LAISLHAVHDTLRDILVPINKKYQLALLMDACRNYPGLSNAKRITFEYVMLKDVNDSLDD 306
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
AK+L+ L++GIP KINLI FN GS + + E++ F +++ AG +R+ RG D
Sbjct: 307 AKQLVQLLKGIPAKINLIPFNSWPGSHYQCSDWEQIERFADVINRAGYASPIRMPRGRDI 366
Query: 446 MAACGQLGNPGAIQAPLLRVPEKFQ 470
+AACGQL + + LR E+ Q
Sbjct: 367 LAACGQLKSA----SERLRKSERLQ 387
>gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
Length = 391
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 210/359 (58%), Gaps = 17/359 (4%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYG-DDIWAHCTDELE 159
++ ++ +V L G+ ++Q+ + FR Q L W +G DI DE+
Sbjct: 9 VDATQQEPEKVNLLGLPLAAMEQYFLELGEKKFRAQQVLK-WIHHHGVTDI-----DEMS 62
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
L K ++ L AE + + S+DGTRK ++ G ++E V+IP + R T+CV
Sbjct: 63 NLGKVLREKLKSVAEIKPPEIVSQHDSNDGTRKWAIRVEGGGLVEAVLIPDGK-RATLCV 121
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ---AVFARRLLSSEVGSI-TNVVFMGMG 275
SSQVGC+++C FC TG+ G +R L+AAEI+ Q A+ + S G I TNVV MGMG
Sbjct: 122 SSQVGCSLDCSFCSTGKQGFQRDLSAAEIIGQVWLAIKSYDAFQSAKGRIVTNVVMMGMG 181
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N +NV+ A ++M+ + S R+VT+STSG+VP L + S +LAVSL+A D
Sbjct: 182 EPLLNFDNVVAAMDLMMEDNAYGISKRRVTLSTSGVVPALDKLAKVSEVSLAVSLHAPND 241
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLV 393
+R+ ++PINRKY + +L+E+ R + +++ K V EY ++AGVND + A+ L L+
Sbjct: 242 ALRSELVPINRKYPIAVLLESARNYIDAQSDKKRVVTIEYTLIAGVNDQREHAQELAQLL 301
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+G PCKINLI FN S + + + F +L AG V +R +RGDD AACGQL
Sbjct: 302 KGYPCKINLIPFNTFDQSDYRRPSGNAVSRFWQVLVDAGYIVTVRTTRGDDIDAACGQL 360
>gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72]
gi|205829650|sp|A1K3Y6.1|RLMN_AZOSB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 375
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 200/354 (56%), Gaps = 27/354 (7%)
Query: 124 LQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA-LSL 180
L W +P +A +M W G D + TD + K + L E A R + +
Sbjct: 15 LVDWFAGLGEKPFRARQVMRWMHREGCDDFDQMTD----VAKSLRAKLKEIAVIRPPVPV 70
Query: 181 KDILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFCYTGRMGL 239
+D + SSDGTRK L + + +ETV IP NRG T+CVSSQ GCA++C FC TG+ G
Sbjct: 71 RDSV-SSDGTRKWLLDVGNANAVETVFIPETNRG--TLCVSSQAGCALDCAFCSTGKQGF 127
Query: 240 KRHLTAAEIVEQAVFARRLLSS--------EVGS------ITNVVFMGMGEPLHNVENVI 285
R+LTAAEI+ Q A +LL + E G I+NVV MGMGEPL N +NV+
Sbjct: 128 NRNLTAAEIIGQLWLANKLLGAARDAAADLEAGEKDNGRIISNVVMMGMGEPLANFDNVV 187
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +M+ + S R+VTVSTSG+VP + + +E ALAVSL+A+ D +R+ ++PIN
Sbjct: 188 TALRLMLDDHAYGLSRRRVTVSTSGIVPAIDRLRDECPVALAVSLHASNDALRDRLVPIN 247
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
+KY L L+ + L + FEYVML GVND A+ LI LV+ +PCK NLI F
Sbjct: 248 QKYPLRELMAACQRYLERAPRDFITFEYVMLDGVNDQEAHARELIALVRDVPCKFNLIPF 307
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
NP S F + E++ F IL AG R +RGDD AACGQL G +Q
Sbjct: 308 NPFPNSGFQRSNAERIRRFAGILLDAGIVTTTRKTRGDDVDAACGQLA--GQVQ 359
>gi|333375090|ref|ZP_08466914.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
Length = 364
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/341 (42%), Positives = 198/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G + + TD L K + L + AE +L S DGTRK
Sbjct: 25 FRAKQ-VMRWIHQGGAENFEQMTD----LAKSLRAKLEQQAEVGIPALMTSQESKDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+L+AAEI+ Q
Sbjct: 80 WLLDVGTGNGVETVFIPETE-RGTLCISSQVGCALECTFCSTGRQGFNRNLSAAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + L + I+NVV MGMGEPL N +NVI A +IM+ + G S R+VTVSTS
Sbjct: 139 WWANKALGVTPKNERVISNVVMMGMGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ D+VR+ I+P+N+KY L L+ L +
Sbjct: 199 GMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFI 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML GVND + A+ L+ LV+ PCK NLI FNP S + ++++ + F+ IL
Sbjct: 259 TFEYVMLDGVNDKPEHARELVELVKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILM 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
A +R +RGDD AACGQL G ++ R EK+Q
Sbjct: 319 EADLVTTVRKTRGDDIDAACGQLA--GQVKDKTKR-QEKWQ 356
>gi|422671333|ref|ZP_16730699.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
str. M302273]
gi|330969073|gb|EGH69139.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
str. M302273]
Length = 382
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|104780237|ref|YP_606735.1| radical SAM protein [Pseudomonas entomophila L48]
gi|122985951|sp|Q1IEI4.1|RLMN_PSEE4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|95109224|emb|CAK13921.1| putative radical SAM enzyme, Cfr family [Pseudomonas entomophila
L48]
Length = 379
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G D +A T+ + K ++ L
Sbjct: 7 KINLLGLTLAEMEQFFDSIGEKRFRAGQ-VMKWIHHFGVDDFAAMTN----VGKVLREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRGPEVVSEDISADGTRKWVVRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|66044493|ref|YP_234334.1| hypothetical protein Psyr_1245 [Pseudomonas syringae pv. syringae
B728a]
gi|75503082|sp|Q4ZX26.1|RLMN_PSEU2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|63255200|gb|AAY36296.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas syringae pv.
syringae B728a]
Length = 382
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|94311047|ref|YP_584257.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
gi|123260051|sp|Q1LLI8.1|RLMN_RALME RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
Length = 384
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 189/328 (57%), Gaps = 13/328 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W +G A D + L K ++ L+ AE R+ + TSSDGTRK
Sbjct: 27 FRARQ-LQRWIHQFG----ASHFDAMTDLAKSLREKLATRAEIRSPAAISDHTSSDGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP + R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 82 WLLDVGAGNAVETVYIPEDT-RGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQL 140
Query: 253 VFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
A + +++G I+NVV MGMGEPL N + V+ A +M+ + S R+VT
Sbjct: 141 WMAEFAMRAQLGRGPKDERVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + + ALAVSL+A+ D +R+ ++P+NRKY L L+ R L F
Sbjct: 201 LSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNRKYPLAELMAACRRYLEFAP 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+ FEY ML GVND + A+ L+ LV +PCK NLI FNP S + +E++ F
Sbjct: 261 RDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFA 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 321 QVLMDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
gi|123264706|sp|Q1QD22.1|RLMN_PSYCK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|92393156|gb|ABE74431.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter cryohalolentis
K5]
Length = 413
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 218/372 (58%), Gaps = 26/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEG 160
+I ++ + ++ L GM+ +L + +S +P ++ + K +Y + TD ++
Sbjct: 22 SIKLVDEAQAKTNLLGMTQAQLADYFKSIGEKPFRSTQVIKWIYQQGV----TDFEQMTN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCN----RGRTT 216
L+K + LS +A + S DGTRK +F + G ++ETV+IP + GR T
Sbjct: 78 LSKSLRDKLSANACVIPPKVIHRQYSDDGTRKWVFEVTGGSLVETVLIPADDSKLNGRKT 137
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR-RLLSSEVGS---------- 265
+CVSSQVGCA++C FC TG+ G +R LTAAEI+ Q A ++ E S
Sbjct: 138 LCVSSQVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWE 197
Query: 266 --ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESN 323
+TNVV MGMGEPL N V+ + +M+ + S R+VT+STSG+VP++ + E +
Sbjct: 198 NNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELD 257
Query: 324 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE---ELHFKNNYKVLFEYVMLAGVN 380
ALA+SL+A DE+RN ++PIN+KY L L+ R +++ ++ V EYVML GVN
Sbjct: 258 VALAISLHAPNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVN 317
Query: 381 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 440
DS + A++L+ L+ +P KINLI FNP + + +++ ++ F NIL+ AG +R +
Sbjct: 318 DSNEHAEQLVALLGNLPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQT 377
Query: 441 RGDDQMAACGQL 452
RGDD AACGQL
Sbjct: 378 RGDDIDAACGQL 389
>gi|372268286|ref|ZP_09504334.1| radical SAM enzyme, Cfr family protein [Alteromonas sp. S89]
Length = 403
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 207/351 (58%), Gaps = 15/351 (4%)
Query: 112 SRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+V L G+S +L + + FR Q L W G D + T+ ++K +
Sbjct: 33 EKVNLLGLSVDKLADFFAGLGEKRFRAVQVLK-WIHQNGVDDFEQMTN----VSKAMRAK 87
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
LSE AE RA + + S+DGTRK L + G VIETV IP + R T+CVSSQVGC+++
Sbjct: 88 LSEIAEVRAPKVLKQMDSADGTRKWLIEVTGGNVIETVYIP-DGDRGTLCVSSQVGCSLD 146
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFA----RRLLSSEVGSITNVVFMGMGEPLHNVENV 284
C FC TG+ G R LTAAEI+ Q A +L + +TNVV MGMGEPL N +NV
Sbjct: 147 CSFCATGKQGFNRDLTAAEIIGQVWIACKSFGQLQPNGPRKVTNVVMMGMGEPLLNFDNV 206
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ + N+M+ + S R+VT+STSG+VP L + ++ +LA+SL+A DE+RN ++PI
Sbjct: 207 VDSMNLMMEDNAYGISKRRVTLSTSGVVPALDRLAEVTDVSLAISLHAPNDELRNELVPI 266
Query: 345 NRKYKLGLLIETLREELHF--KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N+KY + +L+++ + + N+ K+ EY M+ VND + A +L L++ +P KINL
Sbjct: 267 NKKYPIAMLLDSAQRYIENMPDNHRKMTIEYTMIREVNDRPEHAHQLAELLRDVPVKINL 326
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FNP S + ++ + F+ IL G TV +R +RGDD AACGQL
Sbjct: 327 IPFNPFELSDYQRVSNNALRRFQQILLDKGYTVTVRTTRGDDIDAACGQLA 377
>gi|422348552|ref|ZP_16429445.1| 23S rRNA methyltransferase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404659186|gb|EKB32041.1| 23S rRNA methyltransferase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 390
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 145/356 (40%), Positives = 197/356 (55%), Gaps = 20/356 (5%)
Query: 111 GSRVLLKGMSFTELQQW---VRSHAFRPGQ-ALMLWKRLYGDDIWAHCTDELEGLNKDFK 166
S+V L L W + AFR Q + L + + GD D + L K F+
Sbjct: 11 ASKVNLLDFDLEGLTAWCAGIGEKAFRATQLSRWLHRHVEGD------FDNMTNLAKVFR 64
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L + AE R S+DGTRK LF + +G +E+V IP + R T+C+S+Q GCA
Sbjct: 65 AKLKDMAEVRPPVPITEKKSADGTRKWLFDVGNGNAVESVFIPED-DRGTLCISTQAGCA 123
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLH 279
M C FC TG+ G R+LT AEIV Q +A R L + G I+NVV MGMGEPL
Sbjct: 124 MGCLFCSTGKQGFNRNLTTAEIVGQLWWAERELRRDAGVTDPNDRIISNVVLMGMGEPLQ 183
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N++NV++A ++ + + G S R+VTVSTSGLV Q+ + +S ALAVSL+A D +R+
Sbjct: 184 NLDNVLRALHVFLDDNGYGLSRRRVTVSTSGLVRQMDKLAEDSPVALAVSLHAGNDALRD 243
Query: 340 WIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV--QGIP 397
+MP+NRK+ L L+ R L + FEYVML G+ND + L+ LV + +P
Sbjct: 244 KLMPVNRKHPLADLMAACRRYLKVAPRDFITFEYVMLGGINDRLEQVDELVELVRRENVP 303
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CK NLI FNP S E+++ F L AG +R +RGDD AACGQL
Sbjct: 304 CKFNLIPFNPFTQSDLRKPEREQVLAFCRRLNEAGIVTTVRKTRGDDIDAACGQLA 359
>gi|223038329|ref|ZP_03608623.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
gi|222880186|gb|EEF15273.1| radical SAM enzyme, Cfr family [Campylobacter rectus RM3267]
Length = 416
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/332 (42%), Positives = 195/332 (58%), Gaps = 18/332 (5%)
Query: 135 PGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKIL 194
P +A +++ LY + A DE+ L KD + L + F L S+DG+ K L
Sbjct: 19 PFRAKQIFEWLYKKN--ATSFDEMLNLPKDLRANLVQEFYFDPLKCVKFEQSADGSIKYL 76
Query: 195 FMLDDGLVIETVVIPCNR------------GRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
F L DGL IE+V++P R TVCVSSQVGC M C FC T + GL R+
Sbjct: 77 FELKDGLRIESVLLPMKEEQTNEQGKISRHARYTVCVSSQVGCKMGCAFCLTAKGGLVRN 136
Query: 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
LTA EIV Q ++ +R NVV+MGMGEPL N+ +V KA I+ GL SPR
Sbjct: 137 LTAGEIVGQILWIKRENKIPYERRINVVYMGMGEPLDNLASVSKAVKILTENDGLAISPR 196
Query: 303 KVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
+ TVSTSGL Q+K+ L E + LA+SL+A TDE+R+ +MPIN+ Y + +++ +R
Sbjct: 197 RQTVSTSGLGNQIKK-LGEMDLGVLLAISLHAVTDELRSRLMPINKAYNIEAVMDAVRG- 254
Query: 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 420
+V+FEY+++ G+NDS DAK+L+ L+ GI K+NLI FNPH GS+F
Sbjct: 255 FPIDMRKRVMFEYLVIRGLNDSLADAKKLVRLLHGIRAKVNLIYFNPHEGSEFERPELSD 314
Query: 421 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
M++F++ L G T +R S+G D AACGQL
Sbjct: 315 MVKFQDYLCAHGITCTIRQSKGLDISAACGQL 346
>gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella
halifaxensis HAW-EB4]
gi|205829881|sp|B0TLI1.1|RLMN_SHEHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4]
Length = 373
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 211/372 (56%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +K RVL FTE+ + FR Q LM W +G +E+ +N
Sbjct: 7 NLLDLDRKALRVL-----FTEMGE----KPFRADQ-LMKWIYHFG----VSDFEEMTNIN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L+ E A + S DGT K + DG +ETV IP + R T+CVSSQ
Sbjct: 53 KVLRAKLAAKCEIVAPEISSYQKSVDGTIKFAINVGDGQEVETVYIPED-DRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPL 278
VGCA+ C FC T + G R+LT AEIV Q A F + + ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIGFVKDTGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N++NVI A +IM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE+R
Sbjct: 172 LNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++P+N+KY L + +R + N +V EYVML +NDS D A L L++
Sbjct: 232 DVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCK+NLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|220924357|ref|YP_002499659.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060]
gi|219948964|gb|ACL59356.1| radical SAM enzyme, Cfr family [Methylobacterium nodulans ORS 2060]
Length = 431
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 195/350 (55%), Gaps = 35/350 (10%)
Query: 129 RSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILT--- 185
R R GQ L W + G E + K + +E + L ++++
Sbjct: 60 REQRMRTGQ-LWHWINVRG-------ASSFEAMTNVGKALKAELEQVYTLDRPEVVSEQV 111
Query: 186 SSDGTRKILFML--------DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM 237
S DGTRK L + + G IE V IP N R T+CVSSQVGC + C FC+TG
Sbjct: 112 SRDGTRKWLLRMPPTGRHDHNRGAEIECVYIPAN-DRGTLCVSSQVGCTLTCSFCHTGTQ 170
Query: 238 GLKRHLTAAEIVEQAVFARRLLSSEVGS---------------ITNVVFMGMGEPLHNVE 282
L R+L+A EI Q V AR L G ++NVVFMGMGEPL+NV+
Sbjct: 171 RLVRNLSAQEITAQLVVARDRLGDWPGQSPPKGTFVPVDGSRFVSNVVFMGMGEPLYNVD 230
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NVI A +M +GL S R++TVSTSG+VPQ ++ ++N LA+SL+A D++RN ++
Sbjct: 231 NVIDAIGVMSDNEGLGLSRRRITVSTSGVVPQFERLGIDANAMLAISLHAVRDDLRNVLV 290
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
P+NRKY + L++ R N ++ FEYVML GVNDS +A+ L+ L++GIP KINL
Sbjct: 291 PLNRKYPIRELLDACRNYPGVSNARRITFEYVMLKGVNDSDAEARELVRLLKGIPAKINL 350
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP GS + + E++ F I+ AG +R RG D +AACGQL
Sbjct: 351 IPFNPWPGSSYECSDWERIERFSEIVFNAGYASPVRTPRGRDILAACGQL 400
>gi|163793899|ref|ZP_02187873.1| radical SAM family enzyme [alpha proteobacterium BAL199]
gi|159181010|gb|EDP65527.1| radical SAM family enzyme [alpha proteobacterium BAL199]
Length = 389
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/331 (42%), Positives = 191/331 (57%), Gaps = 11/331 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR GQ +W LY A + L K + L+E S+ S DGT
Sbjct: 52 AFRTGQ---IWHWLYHRG--ATDFQTMTTLAKPLRARLAETFRISRPSVVTRQDSIDGTI 106
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L DG E V IP R T+CVSSQVGC + C FC+TG L R+LT+AEIV Q
Sbjct: 107 KWLLRFADGNEAEAVFIP-EEDRGTLCVSSQVGCTLTCSFCHTGTQRLVRNLTSAEIVGQ 165
Query: 252 AVFARRLLSSEVGS-----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV 306
+ A L + +TN+V MGMGEPL+N +NV A I++ +G+ S R++T+
Sbjct: 166 VMVALDHLGAYPTGGPNRPLTNIVLMGMGEPLYNFDNVASAMRIIMDGEGVALSKRRITL 225
Query: 307 STSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN 366
STSG+VP + Q + LA+SL+ATTD VR+ ++PINRK+ + L++ R N
Sbjct: 226 STSGVVPMMAQCGADLGVNLAISLHATTDTVRDDLVPINRKWPIAELLDACRRYPGLNNA 285
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
++ FEYVMLAGVND+ DA+RL+ L++GIP KINLI FNP GS++ + + + F
Sbjct: 286 RRITFEYVMLAGVNDAPADARRLVALIEGIPAKINLIPFNPWPGSKYVCSDPDTIERFAQ 345
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGA 457
I+ AG +R RG D +AACGQL + A
Sbjct: 346 IVLAAGYASPVRTPRGRDILAACGQLKSESA 376
>gi|387128396|ref|YP_006297001.1| ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM1]
gi|386275458|gb|AFI85356.1| Ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM1]
Length = 368
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 190/308 (61%), Gaps = 7/308 (2%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D++ L+K ++ L++ AE R L S+DGTRK + +D IETV IP N GR
Sbjct: 46 DQMSNLSKSLREKLTQIAEIRVPELLHEHISTDGTRKWIIKMDGDNSIETVFIPEN-GRG 104
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFM 272
T+CVSSQVGCA+ C FC TG+ G R+L+AAEI+ Q A L + +TNVV M
Sbjct: 105 TLCVSSQVGCALTCTFCSTGQQGFNRNLSAAEIIAQLWIANEALGKDPKGNRMVTNVVMM 164
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL N NVI A N+M + S R++T+STSG+VP + + + + +LA+SL+A
Sbjct: 165 GMGEPLTNYNNVISAMNLMRDDLAYGISWRRLTLSTSGVVPMIDRLKEDCHVSLAISLHA 224
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKN-NYKVLFEYVMLAGVNDSFDDAKRLIG 391
D++R+ I+P+N KY + L+ + + + + EYVMLAG+NDS DA+ LI
Sbjct: 225 ANDKLRSEIIPLNDKYPIAELLAACKRYVTGEQLRRHITVEYVMLAGINDSEQDARDLIR 284
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
+++G+P KINLI FNP G+ + ++ +I F+ L AG +R +RGDD +AACGQ
Sbjct: 285 ILKGLPNKINLIPFNPFPGTDYQCSSRNVIIRFKEQLIAAGLVATVRKTRGDDIVAACGQ 344
Query: 452 LGNPGAIQ 459
L G +Q
Sbjct: 345 LA--GEVQ 350
>gi|194290009|ref|YP_002005916.1| hypothetical protein RALTA_A1912 [Cupriavidus taiwanensis LMG
19424]
gi|193223844|emb|CAQ69853.1| Conserved hypothetical protein; radical SAM enzyme, Cfr family
domain; putative iron binding enzyme [Cupriavidus
taiwanensis LMG 19424]
Length = 384
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 188/328 (57%), Gaps = 13/328 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W YG A D + L K ++ L+ AE RA ++ S+DGTRK
Sbjct: 27 FRARQ-LQRWIHHYG----ASRFDAMSDLAKSLREKLATRAEIRAPAVITDNLSADGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + +G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 82 WLLDVGEGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQL 140
Query: 253 VFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
A + ++G I+NVV MGMGEPL N + V+ A +M+ + S R+VT
Sbjct: 141 WMAEFAMREQLGRGPKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 201 LSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAP 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+ FEY ML GVND + A+ L+ LV +PCK NLI FNP S + +E++ F
Sbjct: 261 RDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFA 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 321 QVLMDAGVVTTIRKTRGDDIDAACGQLA 348
>gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
Length = 371
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/359 (37%), Positives = 212/359 (59%), Gaps = 9/359 (2%)
Query: 96 SDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT 155
S G N N P K L +S EL++W+R + +A+ +W+ +Y
Sbjct: 5 SALGIAKNKNHKPAKS----LLDLSLQELREWIRLRDYPEYRAVQVWQAIYRQ--LEVDP 58
Query: 156 DELEGLNKDFKKMLSEHAEFRALS-LKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGR 214
+++ L K +++LS F ++ ++ + T K+LF L+DG IE+V++ GR
Sbjct: 59 EKMTSLPKALREVLSAEFPFPNITPVRTFVADGGDTEKVLFQLEDGNAIESVLMEYMDGR 118
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 274
TVCVSSQ GCA+ C FC TG G R+L+A EIV Q ++ + L + +TN+V+MGM
Sbjct: 119 ATVCVSSQAGCAIGCTFCATGLGGFYRNLSAGEIVYQILYFSKKLRDKGKRLTNIVYMGM 178
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF-LNESNCALAVSLNAT 333
GEPL N++ V ++ + G++FS R++T+ST+GLV Q+ +F + LA+SL+A
Sbjct: 179 GEPLANLDAVWRSVENLHEPTGMNFSARRITISTAGLVHQIDRFPPTDLQVNLAISLHAP 238
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
D++R IMPINR++ + LI + + + + + ++ FEYV++AG N S + A+ L L+
Sbjct: 239 NDDLRTSIMPINRRWPISELIASAKRYVE-RTHRRITFEYVLIAGCNSSKEHARDLSNLL 297
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+G+ C +NLI N GS F P + E++ FR+IL AG +RL RG D +AACGQL
Sbjct: 298 RGLLCHVNLIPLNRVPGSPFEPPSTEEVNTFRDILLSAGIPCTVRLERGADILAACGQL 356
>gi|227823764|ref|YP_002827737.1| radical SAM enzyme, Cfr family [Sinorhizobium fredii NGR234]
gi|259491994|sp|C3MAJ1.1|RLMN_RHISN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|227342766|gb|ACP26984.1| putative radical SAM enzyme, Cfr family [Sinorhizobium fredii
NGR234]
Length = 411
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 189/331 (57%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + D++ ++KD ++ML EH + + S DGTRK L
Sbjct: 58 LWHWLYVRGVSDF--DQMSNVSKDMREMLKEHFTVARPEIVEEQVSGDGTRKWLLRFPPR 115
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IETV IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + A
Sbjct: 116 GAGRPVEIETVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLLA 174
Query: 256 RR--------------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R ++ +E ITN+V MGMGEPL+N +NV A I GL S
Sbjct: 175 RDRLGDFPERDTPQGAIVPAEGRKITNIVMMGMGEPLYNFDNVKTALLIASDGDGLSLSK 234
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + E LA+SL+A DE+R+ ++PIN+KY L L+E R
Sbjct: 235 RRITLSTSGIVPEIYRTGEEIGVMLAISLHAVNDELRDMLVPINKKYPLKELMEACRAYP 294
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML VNDS DAK L+ L++GIP KINLI FNP G+ + + E++
Sbjct: 295 GLSNARRITFEYVMLKDVNDSLQDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQI 354
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F + + AG +R RG D +AACGQL
Sbjct: 355 EAFADFINQAGYASPIRTPRGRDILAACGQL 385
>gi|410621688|ref|ZP_11332534.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410158926|dbj|GAC27908.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 385
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/331 (40%), Positives = 197/331 (59%), Gaps = 12/331 (3%)
Query: 128 VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSS 187
+ FR Q +M W G+ + D++ +NKD + L + +A + + ++
Sbjct: 34 INEKPFRAEQ-IMKWIYQVGESDF----DKMTNINKDLRSKLKSNCVIKAPVISEHQQAT 88
Query: 188 DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
DGT K +L+ G IE+V IP R T+CVSSQVGCA+ C FC TG+ G R+L+ AE
Sbjct: 89 DGTIKFAMLLEGGQEIESVWIP-ETDRATLCVSSQVGCALECTFCSTGQQGFNRNLSVAE 147
Query: 248 IVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
I+ Q A F + ITNVV MGMGEPL N++NV+ A IM+ + G S R+
Sbjct: 148 IIGQVWRVATFIGLSKDTSQRPITNVVMMGMGEPLLNLKNVVPAMRIMLDDFGFGLSKRR 207
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL-- 361
VT+STSG+VP L ++ + ALA+SL+A +++R+ I+P+N+KY + + ++R L
Sbjct: 208 VTLSTSGVVPALDMLGDQIDVALAISLHAPDNKLRDEIVPVNKKYPIEEFLASVRRYLAK 267
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N KV EYVML +NDS D A L +++ PCKINLI FNP+ G+ +T +++ +M
Sbjct: 268 SKANQGKVTVEYVMLNQINDSTDQAHELAKVLKETPCKINLIPFNPYPGTPYTCSSNSRM 327
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F +L G TV +R +RGDD AACGQL
Sbjct: 328 DRFSKVLMEYGFTVVIRKTRGDDIDAACGQL 358
>gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae]
Length = 389
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 208/355 (58%), Gaps = 20/355 (5%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNKD 164
K ++V L M +++Q+ +P +A +M W I+ HC D+ + +NK
Sbjct: 19 KSTKVNLLDMDRKQMRQFFSDTGEKPFRADQVMKW-------IYHHCYDDFDLMTDINKV 71
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L + AE RA + S+DGT K + + V ETV IP + R T+CVSSQVG
Sbjct: 72 LRNKLKQAAEIRAPEIAQEQRSTDGTIKWAITVGEQQV-ETVYIPED-DRATLCVSSQVG 129
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHN 280
CA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MGMGEPL N
Sbjct: 130 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKVIGSLKSSGRRPITNVVMMGMGEPLLN 189
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ NVI A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TDE+R+
Sbjct: 190 LNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDEIRDE 249
Query: 341 IMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
I+PIN+KY + + ++R L N +V EYVML GVNDS + A +L ++ P
Sbjct: 250 IVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQLAECLKHTPS 309
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ ++ +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 310 KINLIPWNPFPGAPYSRSSNSRIDRFAKVLMKYGFTTIVRKTRGDDIDAACGQLA 364
>gi|239830929|ref|ZP_04679258.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301]
gi|444312528|ref|ZP_21148109.1| radical SAM protein [Ochrobactrum intermedium M86]
gi|239823196|gb|EEQ94764.1| radical SAM enzyme, Cfr family [Ochrobactrum intermedium LMG 3301]
gi|443484125|gb|ELT46946.1| radical SAM protein [Ochrobactrum intermedium M86]
Length = 411
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 203/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GMS E+ Q + Q M LW LY + ++ ++KD + +L++
Sbjct: 30 LIGMSREEMAQALIKVGVPERQTKMRISQLWHWLYVRGVSDFA--DMRNISKDLRALLAQ 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK LF + IE+V IP GR T+C+SSQVGC
Sbjct: 88 HFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIP-EEGRGTLCISSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS +DAK L+ L
Sbjct: 267 VRDELRDILVPINKKYPLEQLIKACREYPGLSNAKRITFEYVMLKDINDSLEDAKLLVKL 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+QGIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|23500991|ref|NP_697118.1| hypothetical protein BR0077 [Brucella suis 1330]
gi|376279779|ref|YP_005153785.1| hypothetical protein BSVBI22_A0077 [Brucella suis VBI22]
gi|384223773|ref|YP_005614937.1| hypothetical protein BS1330_I0077 [Brucella suis 1330]
gi|81753358|sp|Q8G374.1|RLMN_BRUSU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|23346851|gb|AAN29033.1| conserved hypothetical protein TIGR00048 [Brucella suis 1330]
gi|343381953|gb|AEM17445.1| hypothetical protein BS1330_I0077 [Brucella suis 1330]
gi|358257378|gb|AEU05113.1| hypothetical protein BSVBI22_A0077 [Brucella suis VBI22]
Length = 411
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 202/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GMS E+ + + Q M LW LY + ++ ++KD + ML++
Sbjct: 30 LIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFA--DMRNISKDLRAMLAQ 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK LF + IE+V IP GR T+C+SSQVGC
Sbjct: 88 HFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIP-EEGRGTLCISSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I G S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGPSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+QGIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|452746471|ref|ZP_21946291.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri NF13]
gi|452009724|gb|EME01937.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri NF13]
Length = 382
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 204/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ ++L+ + S FR GQ +M W +G D + D + L K ++ L
Sbjct: 7 KVNLLGLTQSQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNLGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + S +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A D +R+ ++PIN
Sbjct: 181 AAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L G+ND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLEMLLAACKGYISRLGEKRVLTIEYTLLKGINDQPEHAEQMIALLADIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL G V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQL 348
>gi|392420160|ref|YP_006456764.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri CCUG 29243]
gi|390982348|gb|AFM32341.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri CCUG 29243]
Length = 382
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ ++L+ + S FR GQ +M W +G D + D + L K ++ L
Sbjct: 7 KVNLLGLTQSQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNLGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + S +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +IM+ + G S RKVT+STSG+VP + + + +LA+SL+A D +R+ ++PIN
Sbjct: 181 AAMHIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L G+ND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLDMLLAACKGYISRLGEKRVLTIEYTLLKGINDQPEHAEQMITLLADIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL G V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQL 348
>gi|237800040|ref|ZP_04588501.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022895|gb|EGI02952.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 382
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|338211352|ref|YP_004655405.1| ribosomal RNA large subunit methyltransferase N [Runella
slithyformis DSM 19594]
gi|336305171|gb|AEI48273.1| Ribosomal RNA large subunit methyltransferase N [Runella
slithyformis DSM 19594]
Length = 353
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 200/349 (57%), Gaps = 14/349 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSH---AFRPGQ-ALMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
S+ ++ ++ +L++W+ H AFR Q A LWK+ A DE+ L+ ++
Sbjct: 8 SKQDIRKLTVAQLKEWLGQHGEQAFRAKQIAEWLWKKS------ATSFDEMSNLSLKTRQ 61
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
+LSEH + RA+S S+DGT K F L DG +IE V+IP + R T CVSSQVGC++
Sbjct: 62 LLSEHFDIRAISNAKSQKSNDGTVKSAFKLHDGHLIEGVLIPAD-DRMTACVSSQVGCSL 120
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-SITNVVFMGMGEPLHNVENVIK 286
C+FC TG M KR+L AAE+ +Q V R +TN+V+MGMGEPL N NV++
Sbjct: 121 TCKFCATGYMDRKRNLDAAEMYDQVVAIDRQAKENFNVPLTNIVYMGMGEPLLNYANVLE 180
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF-LNESNCALAVSLNATTDEVRNWIMPIN 345
+ + +GL SP+++TVST+G+ +K+ +E LA+SL+A D RN IMPIN
Sbjct: 181 SIEKITSPEGLGMSPKRITVSTAGIAKMIKKLGDDEVKFNLALSLHAANDVKRNQIMPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
L L E L + + K ++ FEY++ ND+ DAK L + +P K+N+I +
Sbjct: 241 ESNSLENLAEAL-QYFYGKTKNRITFEYIVFNNFNDTLQDAKELWEFTKKVPAKVNIIEY 299
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
NP + F T +K+ +F L G V +R SRG D AACGQL N
Sbjct: 300 NPIAEADFKNTGVDKLEQFARFLESKGVIVNVRRSRGKDIDAACGQLAN 348
>gi|85859749|ref|YP_461951.1| radical SAM protein [Syntrophus aciditrophicus SB]
gi|123752486|sp|Q2LUM5.1|RLMN_SYNAS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|85722840|gb|ABC77783.1| radical SAM family enzyme [Syntrophus aciditrophicus SB]
Length = 348
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 196/341 (57%), Gaps = 5/341 (1%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
+R+ ++ MS E++ ++ S +A + K LY A DE+ L++ + L+E
Sbjct: 4 NRINIRDMSLEEIESFISSLGKEKYRARQIMKWLYSQG--AKSFDEMTTLSRAVRDQLNE 61
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
A + + SSDGTRKILF L D IE+V+IP + T C+S+QVGC M C+F
Sbjct: 62 MACITLPEIARVQQSSDGTRKILFRLQDNSFIESVLIP-GKHNWTACISTQVGCHMGCRF 120
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIM 291
C+T R G +R+L +EI Q + L E I N+V MGMGEPL N N +KA I+
Sbjct: 121 CFTARQGFRRNLKPSEITGQLTMLQFYLP-EGPEIKNIVMMGMGEPLANYRNTLKAIRII 179
Query: 292 VHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 351
+ GL FS RK+T+STSG+ P ++Q + LA+SLNA TD +R+ +MP+NRKY L
Sbjct: 180 TSDYGLGFSTRKITLSTSGITPMIEQLGRDLCINLAISLNAPTDSIRSELMPVNRKYPLD 239
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
L++ R + FEY+++ GVN S A+ L L++GI CK+NLI FN
Sbjct: 240 RLLQACR-NYPMPGRRMLTFEYILIDGVNSSPAHAEMLCRLLKGIRCKLNLIRFNEFPDC 298
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F ++E ++ F+ IL T +R SRG D +AACGQL
Sbjct: 299 PFKTPSEETVLAFQQILVKHHYTAIIRASRGRDILAACGQL 339
>gi|421618663|ref|ZP_16059638.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri KOS6]
gi|409779416|gb|EKN59074.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri KOS6]
Length = 382
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ ++L+ + S FR GQ +M W +G D + D + L K ++ L
Sbjct: 7 KVNLLGLTQSQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNLGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + S +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +IM+ + G S RKVT+STSG++P + + + +LA+SL+A D +R+ ++PIN
Sbjct: 181 AAMHIMMDDLGYGISKRKVTLSTSGVLPMIDELAKVIDVSLALSLHAPNDALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L G+ND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLDVLLAACKRYISRLGEKRVLTVEYTLLKGINDQPEHAEQMIALLADIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL G V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQL 348
>gi|254292458|ref|YP_003058481.1| Cfr family radical SAM protein [Hirschia baltica ATCC 49814]
gi|254040989|gb|ACT57784.1| radical SAM enzyme, Cfr family [Hirschia baltica ATCC 49814]
Length = 390
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 203/355 (57%), Gaps = 13/355 (3%)
Query: 108 PKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT-----DELEGLN 162
P + V L G+S +L++ + +A M ++ W H D++ +
Sbjct: 14 PAETGPVNLSGLSLVKLRERMEEIGIDKKKAKMRANQVSH---WMHNFGVTDFDDMTNIA 70
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
KD + L E+ + + S DGT+K L G+ E+V IP +CVSSQ
Sbjct: 71 KDMRAKLVENHIIARPDITEHKVSVDGTQKWLSRFGPGIEAESVFIPDVARSGALCVSSQ 130
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS-----SEVGSITNVVFMGMGEP 277
VGC ++C FC+TG + R+LTA EIV Q + AR L SE +TN+VFMGMGEP
Sbjct: 131 VGCTLSCTFCHTGTQKMVRNLTAQEIVAQVLVARDTLGEWPTPSENRKLTNIVFMGMGEP 190
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L+N++NV++A + + +G+ R++TVST+G+ P++ + +N LA+SL+AT D++
Sbjct: 191 LYNLDNVVEAIDTISDCEGISIGRRRITVSTAGVAPKIPELGARTNAMLAISLHATNDDL 250
Query: 338 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
R+ I+PIN+KY L L + +R N+ +V FEYVML VNDS +A LI L++G+P
Sbjct: 251 RDEIVPINKKYNLECLFDAIRSYPDLGNSKRVTFEYVMLKDVNDSLAEAVDLIKLLKGLP 310
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
KINLI FNP GS + + +K+ F +L AG + +R RG D AACGQL
Sbjct: 311 AKINLIPFNPWPGSPYECSDWDKIETFAEVLNRAGLSAPIRTPRGRDIFAACGQL 365
>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
gi|205829772|sp|A1WXZ3.1|RLMN_HALHL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
SL1]
Length = 359
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 184/297 (61%), Gaps = 3/297 (1%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
DE+ L+K ++ L EHA + +SDGTRK + L DG +E V IP + R
Sbjct: 50 DEMTDLSKALRQRLREHARVGLPEVAADQQASDGTRKWVVRLADGNCVEAVYIPEPK-RG 108
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG 275
T+C+SSQ GC M C FC TG G R+LTAAEIV Q AR+ L G+ITN+VFMGMG
Sbjct: 109 TLCISSQAGCPMGCTFCATGEGGFSRNLTAAEIVGQVHVARQHLPE--GAITNIVFMGMG 166
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + VI A+ + + G S R+VT+STSG+V +++ ++ +LAVSL+A +
Sbjct: 167 EPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQRVTDVSLAVSLHAPNN 226
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
E+RN ++P+NRK L L+ + K + ++ +EYVML GVND + A+ L+ ++G
Sbjct: 227 ELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLRG 286
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
IP K+NLI FNP+ G+++ T D ++ F + L G T +R +RGDD ACGQL
Sbjct: 287 IPSKVNLIPFNPYPGARYGRTPDRQVRRFADRLLEHGLTATIRETRGDDIDGACGQL 343
>gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS185]
gi|205829879|sp|A6WQQ0.1|RLMN_SHEB8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185]
Length = 373
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 207/372 (55%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +K R L M FR Q LM W +G +E+ +N
Sbjct: 7 NLLDLDRKAMRALFADMG---------EKPFRADQ-LMKWLYHFG----VSDFEEMTNIN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K ++ L+ E A + S+DGT K + G +ETV IP + R T+CVSSQ
Sbjct: 53 KVLRQKLAARCEIVAPEISSFQKSTDGTIKFAINVGQGQEVETVYIPED-DRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--SSEVGS--ITNVVFMGMGEPL 278
VGCA+ C FC TG+ G R+LT +EIV Q L + + G ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NVI A +IM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE+R
Sbjct: 172 LNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++PIN+KY L + +R + N +V EYVML +NDS D A L L++
Sbjct: 232 DILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|167644157|ref|YP_001681820.1| radical SAM protein [Caulobacter sp. K31]
gi|205829696|sp|B0T387.1|RLMN_CAUSK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|167346587|gb|ABZ69322.1| radical SAM enzyme, Cfr family [Caulobacter sp. K31]
Length = 404
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/272 (46%), Positives = 174/272 (63%), Gaps = 5/272 (1%)
Query: 186 SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTA 245
S DGTRK L + G+ +ETV IP +CVSSQVGC +NC FC+TG L R+LTA
Sbjct: 101 SKDGTRKWLIRMAPGIEVETVYIPSVGRAGALCVSSQVGCTLNCSFCHTGTQALVRNLTA 160
Query: 246 AEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS 300
AEIV Q A+ L+ E ++N+VFMGMGEPL+N+ +V A I+ +G+ S
Sbjct: 161 AEIVAQVQIAKDDLAEWPSDKEDRLLSNIVFMGMGEPLYNLGHVADAIEIISDNEGIGIS 220
Query: 301 PRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
R++TVSTSG+VPQL+ +++ LA+SL+AT D +R+ ++P+N+KY L L+ +R
Sbjct: 221 RRRITVSTSGVVPQLEALGDKTQAMLAISLHATNDALRDVLVPLNKKYPLEDLMAGVRAY 280
Query: 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 420
N +V FEYVML GVNDS D+A+ L+ L++GIP KINLI FNP G+ + +
Sbjct: 281 PGLSNARRVTFEYVMLKGVNDSPDEARALVKLIKGIPAKINLIPFNPWPGTDYVCSDWAA 340
Query: 421 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F IL AG + +R RG D +AACGQL
Sbjct: 341 IEAFGAILNKAGYSSPIRTPRGRDILAACGQL 372
>gi|386021784|ref|YP_005939808.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 4166]
gi|327481756|gb|AEA85066.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 4166]
Length = 382
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 203/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+ + S FR GQ +M W +G D + D + L K ++ L
Sbjct: 7 KVNLLGLTQPQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNLGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEIVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A D +R+ ++PIN
Sbjct: 181 AAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L GVND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL G V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQL 348
>gi|410089050|ref|ZP_11285679.1| hypothetical protein AAI_00450 [Pseudomonas viridiflava UASWS0038]
gi|409763709|gb|EKN48663.1| hypothetical protein AAI_00450 [Pseudomonas viridiflava UASWS0038]
Length = 382
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQLEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|395764888|ref|ZP_10445508.1| ribosomal RNA large subunit methyltransferase N [Bartonella sp.
DB5-6]
gi|395413705|gb|EJF80167.1| ribosomal RNA large subunit methyltransferase N [Bartonella sp.
DB5-6]
Length = 409
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 150/378 (39%), Positives = 209/378 (55%), Gaps = 28/378 (7%)
Query: 98 AGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAH 153
A G DN+ V K+ S++ L G+S E+ Q +++ Q M +W LY +
Sbjct: 15 ARGTDNVVV--KERSKLSLIGLSQNEMMQALKTIGVPERQIRMRVRQIWHWLYVRGV--S 70
Query: 154 CTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVI 208
+E+ ++K ++ML H + S DGTRK L + IETV I
Sbjct: 71 NFNEMLNISKPMQEMLKSHFSIARPEIVWEQISKDGTRKWLLRFPARGAGRPVEIETVYI 130
Query: 209 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS------- 261
P GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 131 P-EEGRGTLCLSSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLVARDCLGDFPDRNTP 189
Query: 262 -------EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQ 314
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP
Sbjct: 190 DGAIVPVEGRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPG 249
Query: 315 LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 374
+ + E LA+SL+A D +R+ ++PIN+KY L LL+ R N ++ FEYV
Sbjct: 250 IIRTGEEIGVMLAISLHAVHDTLRDMLVPINKKYPLALLMNACRNYPGLSNAKRITFEYV 309
Query: 375 MLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCT 434
ML +NDS DDAKRL+ L++GIP KINLI FNP G+ + + E++ F +++ AG
Sbjct: 310 MLKDINDSLDDAKRLVQLLKGIPAKINLIPFNPWPGTNYQCSDWEQIERFADVVNQAGYA 369
Query: 435 VFLRLSRGDDQMAACGQL 452
+R+ RG D +AACGQL
Sbjct: 370 SPIRVPRGRDILAACGQL 387
>gi|304392673|ref|ZP_07374613.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130]
gi|303295303|gb|EFL89663.1| radical SAM enzyme, Cfr family [Ahrensia sp. R2A130]
Length = 423
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 197/344 (57%), Gaps = 33/344 (9%)
Query: 137 QALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKIL 194
+A LW+ +Y W TD + + KD + L+++ L + L S+DGTRK L
Sbjct: 55 RASQLWQWIY----WYGHTDFAAMTNIAKDLRAKLADNFTLERPELVEELISTDGTRKWL 110
Query: 195 FML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
F + +ETV IP R T+C+SSQVGC + C FC+TG L R+LTA EI+
Sbjct: 111 FRFPARGAGAPVEVETVYIP-ESDRGTLCISSQVGCTLTCTFCHTGTQKLVRNLTAEEIL 169
Query: 250 EQAVFARRLL--------------SSEVG-------SITNVVFMGMGEPLHNVENVIKAA 288
Q + AR L + E ++N+V MGMGEPL+N E+V KA
Sbjct: 170 MQLMVARDRLGDFPDKPPVKAAAKNEEEAFIPDGDRKVSNIVMMGMGEPLYNFEHVKKAL 229
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
I +GL S R++T+STSG+VP +++ +E C LA+SL+AT DE+R+ ++PIN+KY
Sbjct: 230 LIASDNEGLSLSKRRITLSTSGVVPGIERTGDEIGCGLAISLHATNDELRDVLVPINKKY 289
Query: 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 408
+ L++ R N+ ++ FEYVML GVNDS DAK L+ L++GIP KINLI FNP
Sbjct: 290 PIAKLLDACRNYPGASNSKRITFEYVMLDGVNDSLADAKELVRLLKGIPAKINLIPFNPW 349
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
GSQ+ ++ EK+ F + G +R RG D AACGQL
Sbjct: 350 PGSQYECSSWEKIEAFAEFVNANGYASPVRTPRGRDIFAACGQL 393
>gi|150398262|ref|YP_001328729.1| radical SAM protein [Sinorhizobium medicae WSM419]
gi|205829889|sp|A6UE14.1|RLMN_SINMW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150029777|gb|ABR61894.1| radical SAM enzyme, Cfr family [Sinorhizobium medicae WSM419]
Length = 413
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 185/316 (58%), Gaps = 20/316 (6%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPC 210
+E+ ++KD ++MLS H + + S DGTRK L + IETV IP
Sbjct: 73 NEMSNVSKDMREMLSAHFTIARPEIVEEQVSGDGTRKWLLRFPPRGAGRPVEIETVYIP- 131
Query: 211 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---------- 260
GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 132 EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLLARDRLGDFPDRDTPQG 191
Query: 261 ----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
+E ITNVV MGMGEPL+N ENV A I GL S R++T+STSG+VP++
Sbjct: 192 AIVPAEGRKITNVVMMGMGEPLYNFENVKTALLIASDGDGLSLSKRRITLSTSGIVPEIY 251
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E LA+SL+A D++R+ ++PIN+KY L L+E R N ++ FEYVML
Sbjct: 252 RTGEEIGVMLAISLHAVRDDLRDMLVPINKKYPLKELMEACRAYPGLSNARRITFEYVML 311
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
VNDS +DAK L+ L++GIP KINLI FNP G+ + + E++ +F + + AG
Sbjct: 312 KDVNDSLEDAKELVKLLKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINQAGYASP 371
Query: 437 LRLSRGDDQMAACGQL 452
+R RG D +AACGQL
Sbjct: 372 IRTPRGRDILAACGQL 387
>gi|316931629|ref|YP_004106611.1| radical SAM protein [Rhodopseudomonas palustris DX-1]
gi|315599343|gb|ADU41878.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris DX-1]
Length = 399
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 197/333 (59%), Gaps = 17/333 (5%)
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 193
R +A LW +Y A E+ ++K+ + L+EH + S+DGTRK
Sbjct: 48 RKMRAQQLWHWMYVRG--ARDFSEMTNVSKEMRATLAEHVTVDRPEVVAEQISADGTRKW 105
Query: 194 LFMLDDG------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
L L G +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA E
Sbjct: 106 LLRLPSGGDGQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCAFCHTGTQRLVRNLTAGE 164
Query: 248 IVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
IV Q + AR L+ + ITN+V MGMGEPL+N + V A I+ +G+
Sbjct: 165 IVGQVMVARDRLNDWIDRETPNGNRLITNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGI 224
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R++T+STSG+VP +K+ +E LA+SL+A DE+R+ ++P+NRKY L L++ R+
Sbjct: 225 SRRRITLSTSGVVPNIKRTGDEIGVMLAISLHAVRDELRDELVPLNRKYPLKELLQACRD 284
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N ++ FEYVML GVND+ DDA++L+ L++GIP KINLI FNP GS++ + +
Sbjct: 285 YPGASNARRITFEYVMLKGVNDTIDDARKLVQLLKGIPAKINLIPFNPWPGSKYECSDWD 344
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ +F + AG + +R RG D +AACGQL
Sbjct: 345 QIEKFSEYIFNAGYSSPVRTPRGRDILAACGQL 377
>gi|345872018|ref|ZP_08823958.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
gi|343919552|gb|EGV30298.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
Length = 365
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/267 (48%), Positives = 170/267 (63%), Gaps = 4/267 (1%)
Query: 186 SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTA 245
S DGT K + L DG IETV IP + R+T+CVSSQVGCA+ C FC T R G R+L+
Sbjct: 78 SEDGTTKWVMELADGQRIETVFIPEGK-RSTICVSSQVGCALECAFCATARQGFNRNLSV 136
Query: 246 AEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
AEIV Q A R L + + TNVV MGMGEPL N E +KA +IM + + ++VT
Sbjct: 137 AEIVGQVWHAARQLGT---APTNVVMMGMGEPLANFEAAVKAMDIMQDDLAYMLAKQRVT 193
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + S+ +LAVSL+A DE+R+ ++PINRKY L LI + +
Sbjct: 194 LSTSGIVPNIYRLREVSDVSLAVSLHAPNDELRDQLVPINRKYPLSELIPACKAYIANDK 253
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV +EYVML GVNDS AK+LI L++G+P K+NLI FNP G+ F +T E++ FR
Sbjct: 254 RRKVTWEYVMLDGVNDSIAHAKQLIRLLEGVPSKLNLIPFNPFAGNDFGTSTPERIEAFR 313
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L AG R +RGD+ AACGQL
Sbjct: 314 VRLTRAGIFAMTRKTRGDEISAACGQL 340
>gi|307942545|ref|ZP_07657893.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4]
gi|307774184|gb|EFO33397.1| radical SAM enzyme, Cfr family [Roseibium sp. TrichSKD4]
Length = 406
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 185/311 (59%), Gaps = 20/311 (6%)
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
+ KD + L E+ + S DGTRK LF + +ETV IP GR
Sbjct: 81 IAKDLRAQLEENFSIARPEIVSEQISVDGTRKWLFRFPPRGAGRPVEVETVYIP-EEGRG 139
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------------S 261
T+CVSSQVGC + C FC+TG L R+LT+ EI+ Q + AR LL S
Sbjct: 140 TLCVSSQVGCTLTCTFCHTGTQKLVRNLTSEEILAQILMARDLLGDFPEAKTPQGAIVPS 199
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ++N+V MGMGEPL+N ENV +A I GL S R++T+STSG+VP++ + +E
Sbjct: 200 EGRLVSNIVMMGMGEPLYNFENVKRALLIASDGDGLSLSKRRITLSTSGVVPEIARTGDE 259
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
C LA+SL+A D++R+ ++PIN+K+ L L++T R N ++ FEYVML GVND
Sbjct: 260 IGCMLAISLHAVRDDLRDVLVPINKKWSLEKLLDTCRAYPGLSNAKRITFEYVMLKGVND 319
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DAK+L+ L++GIP KINLI FNP GS + + E++ EF +I+ AG +R R
Sbjct: 320 SNADAKQLVQLLKGIPAKINLIPFNPWPGSDYECSDWERIEEFADIVNRAGYASPIRTPR 379
Query: 442 GDDQMAACGQL 452
G D AACGQL
Sbjct: 380 GRDIFAACGQL 390
>gi|335043890|ref|ZP_08536915.1| putative Fe-S-cluster redox enzyme [Methylophaga aminisulfidivorans
MP]
gi|333787136|gb|EGL53020.1| putative Fe-S-cluster redox enzyme [Methylophaga aminisulfidivorans
MP]
Length = 366
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 184/306 (60%), Gaps = 6/306 (1%)
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTT 216
E+ L+K ++ L AE + + S DGTRK + L G IETV IP GR T
Sbjct: 46 EMSNLSKSLREKLQAVAEIKLPEVMHEHISQDGTRKWIIKLSCGNAIETVFIP-ESGRGT 104
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMG 273
+CVSSQVGCA+ C FC T + G R+L AAEI+ Q A L + +TNVV MG
Sbjct: 105 LCVSSQVGCALTCTFCSTAQQGFNRNLDAAEIIAQLWIANEALGKDPKGNRVVTNVVMMG 164
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N NV+ A N+M + G S R++T+STSG+VP + + + + +LA+SL+A
Sbjct: 165 MGEPLANYSNVVTAMNLMRDDFGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAISLHAA 224
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
DE+R+ I+PIN+KY + L+ + + + + EYVML G+NDS DAK L+ L+
Sbjct: 225 NDELRDQIVPINQKYPIAELLAACKRYVVGQQRRHITVEYVMLDGINDSIQDAKDLVRLL 284
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+G+P KINLI FNP G+ + ++ +++ F+ L G +R +RGDD +AACGQL
Sbjct: 285 KGLPNKINLIPFNPFPGTHYKCSSRNQIVRFQQYLIDQGLVATVRKTRGDDIVAACGQLA 344
Query: 454 NPGAIQ 459
G +Q
Sbjct: 345 --GEVQ 348
>gi|127512219|ref|YP_001093416.1| ribosomal RNA large subunit methyltransferase N [Shewanella loihica
PV-4]
gi|205829882|sp|A3QCF9.1|RLMN_SHELP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|126637514|gb|ABO23157.1| radical SAM enzyme, Cfr family [Shewanella loihica PV-4]
Length = 373
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 151/372 (40%), Positives = 209/372 (56%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +KG R L FTE+ + FR Q LM W +G + T+ +N
Sbjct: 7 NLLDLDRKGLRAL-----FTEMGE----KPFRADQ-LMKWLYHFGVSDFEQMTN----IN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L+ E A + S+DGT K + +G +ETV IP R T+CVSSQ
Sbjct: 53 KVLRAKLAARCEVVAPEISSYQKSADGTIKFAINVGNGQEVETVYIP-EEDRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--SSEVGS--ITNVVFMGMGEPL 278
VGCA+ C FC T + G R+LT +EIV Q L E G I+NVV MGMGEPL
Sbjct: 112 VGCALECTFCSTAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N++NV+ A +IM+ + G S R+VTVSTSG+VP L + + ALAVS++A DE+R
Sbjct: 172 LNLKNVMPAIDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++P+N+KY L + +R L N +V EYVML +NDS D A L L++
Sbjct: 232 DVLVPVNKKYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHELAELMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|109899434|ref|YP_662689.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
atlantica T6c]
gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 380
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 208/353 (58%), Gaps = 9/353 (2%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDF 165
V+ K +++ L + L+++ S +P +A + K +Y + D++ LNK
Sbjct: 4 VMSAKPTKINLLNFNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDF--DQMTNLNKAL 61
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGC 225
++ L E +A + +SDGT K L+ G +ETV IP + R T+CVSSQVGC
Sbjct: 62 REKLKAQCEVKAPEIAYQQGASDGTIKFALRLEGGQEVETVWIP-DEDRATLCVSSQVGC 120
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQA--VFARRLLSSEVGS--ITNVVFMGMGEPLHNV 281
A+ C FC T + G R+L+ +EI+ Q V LS++ ITNVV MGMGEPL N+
Sbjct: 121 ALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNL 180
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
+NV+ A ++M+ + S R+VT+STSG+VP L ++ + ALA+SL+A D++R+ I
Sbjct: 181 KNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDKLRDEI 240
Query: 342 MPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
+PIN+KY + + +R L N KV EYVML G+NDS D A L ++ PCK
Sbjct: 241 VPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLADTPCK 300
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
INLI FNP+ GS ++ +++ ++ F +L+ G V +R +RGDD AACGQL
Sbjct: 301 INLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|407793032|ref|ZP_11140067.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
xiamenensis 10-D-4]
gi|407215392|gb|EKE85231.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
xiamenensis 10-D-4]
Length = 378
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 198/353 (56%), Gaps = 11/353 (3%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKD 164
N + KK + + L E + + FR Q L DD D++ LNK
Sbjct: 3 NAIDKKVNLLDLDREGMREFFKELGEKPFRADQVLKWLYHYCVDDF-----DDMSNLNKK 57
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
++ L AE RA ++ SSDGT K + L DG +ETV IP R T+CVSSQVG
Sbjct: 58 LREKLKHIAEIRAPEIRLQQQSSDGTIKFVMTLFDGQDVETVWIP-ESDRATLCVSSQVG 116
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEPLHN 280
CA+ C FC T + G R+L AEI+ Q +LL + V ++TNVV MGMGEPL N
Sbjct: 117 CALECTFCSTAQQGFNRNLRVAEIIGQVWRVNKLLGAYAETGVKAVTNVVMMGMGEPLLN 176
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
++NV+ A +M+ + G S R+VT+STSG+VP L + + ALA+SL+A D +R+
Sbjct: 177 LKNVVPAMRLMMDDWGFGLSKRRVTLSTSGVVPALDLMKEQIDVALAISLHAPDDALRDQ 236
Query: 341 IMPINRKYKLGLLIETLREELH-FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
I+PIN+KY + + R + K N V EYVML VNDS + A L + G P K
Sbjct: 237 IVPINKKYPIAEFLAASRRYIDGSKANKAVTVEYVMLDHVNDSTEQAHALAKTLAGTPSK 296
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+NLI FNP G+++ +++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 297 VNLIPFNPFPGNEYGRSSNSRIDRFAKVLMSHGLTVMVRKTRGDDIDAACGQL 349
>gi|395767559|ref|ZP_10448092.1| ribosomal RNA large subunit methyltransferase N [Bartonella doshiae
NCTC 12862]
gi|395413922|gb|EJF80375.1| ribosomal RNA large subunit methyltransferase N [Bartonella doshiae
NCTC 12862]
Length = 410
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 212/389 (54%), Gaps = 30/389 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
NV+ KK ++ L G+S E++Q + Q M LW LY + E+
Sbjct: 20 NVVVKKRTKHSLIGLSRDEIEQALTELGVPERQVRMRVRQLWHWLYVRGVSDF--GEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++ML H + + S DGTRK L + +ETV IP GR
Sbjct: 78 ISKPMQEMLKIHFSIARPEIVEEQISQDGTRKWLLRFPARGAGRPVEVETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCISSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLIARDCLGDFPDKDTPNGAIIPL 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP + + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL+E R N ++ FEYVML VND
Sbjct: 257 IGVMLAISLHAVHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDVND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S +DAK+L+ L++GIP KINLI FNP G+ + + E++ F +++ AG +R+ R
Sbjct: 317 SLEDAKQLVQLLKGIPAKINLIPFNPWPGTNYQCSDWEQIERFADVVNQAGYASPIRVPR 376
Query: 442 GDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
G D AACGQL + + LR E+FQ
Sbjct: 377 GRDIFAACGQLKS----ASERLRKSERFQ 401
>gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS195]
gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS223]
gi|373950343|ref|ZP_09610304.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS183]
gi|378709457|ref|YP_005274351.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
gi|386323818|ref|YP_006019935.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
BA175]
gi|418024003|ref|ZP_12662987.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS625]
gi|205829880|sp|A9KXL1.1|RLMN_SHEB9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807210|sp|B8E9S4.1|RLMN_SHEB2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195]
gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223]
gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
gi|333817963|gb|AEG10629.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
BA175]
gi|353536876|gb|EHC06434.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS625]
gi|373886943|gb|EHQ15835.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS183]
Length = 373
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 207/372 (55%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +K R L M FR Q LM W +G +E+ +N
Sbjct: 7 NLLDLDRKAMRALFADMG---------EKPFRADQ-LMKWLYHFG----VSDFEEMTNIN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K ++ L+ E A + S+DGT K + G +ETV IP + R T+CVSSQ
Sbjct: 53 KVLRQKLAARCEIVAPEISSFQKSTDGTIKFAINVGQGQEVETVYIPED-DRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--SSEVGS--ITNVVFMGMGEPL 278
VGCA+ C FC TG+ G R+LT +EIV Q L + + G ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTGQQGFNRNLTVSEIVGQIWRVSHFLGFAKDTGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NVI A +IM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE+R
Sbjct: 172 LNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++PIN+KY L + +R + N +V EYVML +NDS D A L L++
Sbjct: 232 DILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCK+NLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|410637360|ref|ZP_11347940.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
gi|410142983|dbj|GAC15145.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
Length = 378
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 196/326 (60%), Gaps = 12/326 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W G+ + T+ LNK + L E E +A + ++DGT K
Sbjct: 32 FRADQ-LMKWIYQQGETDFEKMTN----LNKSLRAKLVERCEIKAPEIAYQQNATDGTIK 86
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L+ G +ETV IP R T+CVSSQVGCA+ C FC T + G R+LT +EI+ Q
Sbjct: 87 FALKLEGGQEVETVWIP-EADRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIIGQV 145
Query: 253 --VFARRLLSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
V LS + ITNVV MGMGEPL N+++V+ A +IM+ + G S R+VT+ST
Sbjct: 146 WRVATTIGLSKDTAKRPITNVVMMGMGEPLLNLKHVVPAMDIMLDDLGFGLSKRRVTLST 205
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALA+SL+A T+++R+ I+P+N+KY + + +R L N
Sbjct: 206 SGVVPALDKLGDMIDVALAISLHAPTNDLRDEIVPVNKKYPIEEFLAGVRRYLAKSNANQ 265
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML G+NDS D A +L +++ PCKINLI FNP+ GS +T +++ ++ F
Sbjct: 266 GKVTVEYVMLNGINDSTDQAHQLAKVLKETPCKINLIPFNPYPGSPYTCSSNSRIDRFSK 325
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQL 452
+L G TV +R +RGDD AACGQL
Sbjct: 326 VLMEYGITVVVRKTRGDDIDAACGQL 351
>gi|422643971|ref|ZP_16707110.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330957524|gb|EGH57784.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 382
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DVMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDQVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|422297377|ref|ZP_16385015.1| radical SAM enzyme, Cfr family [Pseudomonas avellanae BPIC 631]
gi|422587126|ref|ZP_16661797.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422652852|ref|ZP_16715629.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330872882|gb|EGH07031.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330965912|gb|EGH66172.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|407991223|gb|EKG33126.1| radical SAM enzyme, Cfr family [Pseudomonas avellanae BPIC 631]
Length = 382
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 350
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 136/344 (39%), Positives = 202/344 (58%), Gaps = 12/344 (3%)
Query: 114 VLLKGMSFTELQQWVRSH---AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+ + M EL+ ++ +FR G+ + W G ++ TD L+ + + L
Sbjct: 2 IKIDSMLLEELKDFMVEQGEKSFR-GEQVYKWIFQKGVKDFSQMTD----LSVELRGKLQ 56
Query: 171 EHAEFRALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+A F L +I DG++K LF L+D IE+V + ++ R T+CVS+QVGC M C
Sbjct: 57 NNASFTYLKPIEIKRDEYDGSQKFLFELEDKNKIESVALK-DQDRITLCVSTQVGCRMGC 115
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAAN 289
FC T ++G R LTA EIV Q + L++ +TN+VFMGMGEPL N NV+KA
Sbjct: 116 AFCATAKIGFIRDLTAGEIVRQIMEVNEHLATNSEKVTNIVFMGMGEPLDNYHNVVKAIG 175
Query: 290 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN-ESNCALAVSLNATTDEVRNWIMPINRKY 348
I+ E GL +S RKVTVSTSG+V ++ + + LAVSLNATTD++R+ IMPIN+K+
Sbjct: 176 IITDEMGLGYSHRKVTVSTSGVVDRIDELFKLKKQVNLAVSLNATTDDIRSAIMPINKKF 235
Query: 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 408
+ L++ L+ L + ++ EYVM+ GVND+ DDAKRL+ L+ G+P KINLI++N
Sbjct: 236 NIEKLMKKLK-SLPIQKRKRITIEYVMIKGVNDTLDDAKRLVRLLNGLPIKINLIAYNDG 294
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ ++ ++ F+ L T F+R S G + ACGQL
Sbjct: 295 GNENYRAPDEQTVLSFQKYLVDKHITAFIRKSLGKNIEGACGQL 338
>gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
Length = 380
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 203/357 (56%), Gaps = 22/357 (6%)
Query: 112 SRVLLKGMSFTELQQWVRSH---AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+++ L ++F +L+ + AFR Q DD DE+ L+K ++M
Sbjct: 5 AKINLLDLNFEQLKAFFSDRGEKAFRATQVTKWIHHRCVDDF-----DEMTDLSKSLREM 59
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDD-----------GLVIETVVIPCNRGRTTV 217
L AE RA + S+DGTRK + LD+ G +E V IP + GR T+
Sbjct: 60 LKRDAEVRAPEVVLEQKSADGTRKWVLDLDNQATASRTTPAIGNKVEMVFIPED-GRGTL 118
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGSITNVVFMGMG 275
CVSSQVGC+++C FC T R G R+L+ AEI+ Q A+R L E +TNVV MGMG
Sbjct: 119 CVSSQVGCSLDCSFCSTARQGFSRNLSVAEIIGQVWQAKRTLLELGEDERLTNVVMMGMG 178
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N VI+A N M+ + G S RKVT+STSG+VP +++ + ++ CALAVSL+A D
Sbjct: 179 EPLMNYRPVIQAVNTMMDDMGYGLSKRKVTISTSGMVPAMERMIEDTQCALAVSLHAPND 238
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++PIN+K+ L L+ + V +EYVML GVND+ + A L L++
Sbjct: 239 SLRDELVPINKKHPLNELMGVCDRWVEAGPKRNVTYEYVMLEGVNDNREQAHELGKLLKA 298
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
K+NLI FNP S + +++ ++ EF+ IL G F R +RGDD AACGQL
Sbjct: 299 REAKVNLIPFNPFPNSGYKRSSEARIKEFKRILNSYGVFTFPRKTRGDDIDAACGQL 355
>gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae
Ep1/96]
gi|385785505|ref|YP_005816614.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
Ejp617]
gi|387870486|ref|YP_005801856.1| hypothetical protein EPYR_01105 [Erwinia pyrifoliae DSM 12163]
gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96]
gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163]
gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
Ejp617]
Length = 389
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 211/359 (58%), Gaps = 17/359 (4%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEG 160
+ +PKK ++ L ++ +++++ S +P +A + K +Y DD DE+
Sbjct: 14 VTTIPKK-EKINLLDLNRQQMREFFASLGEKPFRADQVMKWIYHYCCDDF-----DEMTD 67
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK F+ L E AE RA + + S+DGT K + G +ETV IP + R T+CVS
Sbjct: 68 INKVFRNRLKELAEIRAPEVAEEQRSADGTIKWAIQVG-GQQVETVYIP-EKDRATLCVS 125
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGE
Sbjct: 126 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGE 185
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D
Sbjct: 186 PLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDS 245
Query: 337 VRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+RN I+PIN+KY + + ++ + N +V EYVML +NDS D+A L L++
Sbjct: 246 IRNEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHELAALLK 305
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 DTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 364
>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 418
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 222/399 (55%), Gaps = 24/399 (6%)
Query: 65 TFLSPVSPTRRPLSTATCSPQIPLATIEDYC-SDAGGGDNINVLPKKGSRVLLKGMSFTE 123
T +S + ++ +S T S Q T+ ++ + A ++ +K + + L +
Sbjct: 9 TVVSETTASKTTVSNTTVSEQ----TVSEFSPASADASQSVKASAEKINLLDLNRQQMRD 64
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLNKDFKKMLSEHAEFRALSL 180
L + FR Q +M W I+ +C D ++ +NK F+ L E AE RA +
Sbjct: 65 LFMSMGEKPFRADQ-VMKW-------IYHYCCDDFNQMTDINKVFRSKLQEIAEIRAPEV 116
Query: 181 KDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
D SSDGT K ++ G +ETV IP R T+CVSSQVGCA+ C+FC T + G
Sbjct: 117 VDEQRSSDGTIKWAILVG-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFN 174
Query: 241 RHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQG 296
R+L +EI+ Q A +++ + G ITNVV MGMGEPL N+ NV+ A IM+ + G
Sbjct: 175 RNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFG 234
Query: 297 LHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356
S R+VT+STSG+VP L + + + ALA+SL+A TD++RN IMPIN+KY + +
Sbjct: 235 FGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKYNIETFLSA 294
Query: 357 LREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
+R L N +V EYVML +ND + A +L ++ PCKINLI +NP G+ +
Sbjct: 295 VRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKNTPCKINLIPWNPFPGAPYG 354
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 355 RSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 393
>gi|114562291|ref|YP_749804.1| ribosomal RNA large subunit methyltransferase N [Shewanella
frigidimarina NCIMB 400]
gi|122300423|sp|Q085U9.1|RLMN_SHEFN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114333584|gb|ABI70966.1| radical SAM enzyme, Cfr family protein [Shewanella frigidimarina
NCIMB 400]
Length = 373
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 151/374 (40%), Positives = 211/374 (56%), Gaps = 27/374 (7%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEG 160
N+ L +KG R L F+E+ + FR Q LM W +G TD E+
Sbjct: 7 NLLDLDRKGLRAL-----FSEMGE----KPFRADQ-LMKWVYHFG------VTDFEEMNN 50
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK + L+ E A + S+DGT K + G +ETV IP R T+CVS
Sbjct: 51 INKVLRTKLAAKCEIVAPEIASFQKSNDGTIKFAINVGQGQEVETVYIP-EEDRATLCVS 109
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGE 276
SQVGCA+ C FC TG+ G R+LT +EI+ Q + L + G I+NVV MGMGE
Sbjct: 110 SQVGCALECTFCSTGQQGFNRNLTVSEIIGQVWRVSQFLGFHKDTGDRPISNVVMMGMGE 169
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NVI A +IM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE
Sbjct: 170 PLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAPNDE 229
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ ++P+N+KY L + +R L N +V EYVML +NDS D A L L++
Sbjct: 230 LRDVLVPVNKKYPLQEFLAGIRRYLEKSNANRGRVTVEYVMLDHINDSTDQAHELAILMK 289
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 290 DTPCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEHGLTVIVRKTRGDDIDAACGQLA- 348
Query: 455 PGAIQAPLLRVPEK 468
G I+ R+ +K
Sbjct: 349 -GDIRDRTKRLAKK 361
>gi|289626156|ref|ZP_06459110.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289649062|ref|ZP_06480405.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|422584772|ref|ZP_16659873.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330869580|gb|EGH04289.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 382
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+++ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|375336921|ref|ZP_09778265.1| ribosomal RNA large subunit methyltransferase N
[Succinivibrionaceae bacterium WG-1]
Length = 369
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 204/350 (58%), Gaps = 15/350 (4%)
Query: 112 SRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
S++ L + L+++V S FR Q +M W +G +A E+ + +D +
Sbjct: 5 SKINLLNFDYEALEKFVESLGEKKFRAKQ-IMKWIYQFGVTDFA----EMTNIKRDLQVK 59
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
LSE A +A +K S+DGT K DG +IETV IP + R T+CVS+QVGCA+N
Sbjct: 60 LSEIAYIKAPEIKVQNNSADGTIKWALDAGDGQLIETVYIP-DGDRATLCVSTQVGCAVN 118
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLHNVENV 284
C FC TG G R+L +EI+ Q A + + ++ +I NVV MGMGEPL N++NV
Sbjct: 119 CAFCATGAQGYNRNLKTSEIIGQVWRATSCIGFTPNPKLRAIDNVVLMGMGEPLFNLDNV 178
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + G S R+VT+ST+G+VP + + + + ALA+SL+A DE+R ++P+
Sbjct: 179 VPAMKIMLDDLGFGLSKRRVTISTAGVVPNIDKLGDMIDVALAISLHAPNDELRTKLVPL 238
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N +Y + +++ + + N+ +V EYV+LAGVNDS AK L + PCKINL
Sbjct: 239 NERYNIKSILDAVARYVSKSNANSGRVTIEYVLLAGVNDSPKQAKELAKTLANTPCKINL 298
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNPH S F + E + +F +L G TV R +RGDD AACGQL
Sbjct: 299 IPFNPHQDSSFKKPSIEAVNKFYQVLIDHGFTVVTRKTRGDDIKAACGQL 348
>gi|387886621|ref|YP_006316920.1| radical SAM supeorfamily protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871437|gb|AFJ43444.1| radical SAM supeorfamily protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 370
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 187/314 (59%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E+AE + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDSMTDLGKNLRNKLKENAEIVIPKVVFNKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQVGC +NC FC TG+ G R+L++AE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
S+TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFSVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPKIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A TD +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHAPTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA++L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEQLVELLRSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIYAACGQLA 347
>gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera versatilis 301]
gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera versatilis 301]
Length = 374
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 201/357 (56%), Gaps = 18/357 (5%)
Query: 110 KGSRVLLKGMSFTE--LQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDF 165
+G ++L+ ++F + L +W +P +A LM W +G + TD + K
Sbjct: 3 QGKKILVNLLNFNQPQLAKWFAEQGEKPFRAKQLMRWMHHFGVYDFEQMTD----IAKVL 58
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGC 225
++ L AE +++ S+DGTRK L D IETV IP + R T+C+SSQVGC
Sbjct: 59 REKLVVDAEITLPNVQLEQVSNDGTRKWLIGTDTANSIETVFIPED-DRGTLCISSQVGC 117
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---------ITNVVFMGMGE 276
A+ C FC TGR G R+L+ +EI+ Q A + L E G I+NVV MGMGE
Sbjct: 118 ALECTFCSTGRQGFNRNLSVSEIIGQLAIANQSLRQESGYDLLSANDRIISNVVMMGMGE 177
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N +NV+ A IM+ + S R+VT+STSG+VP + + + ALAVSL+A D
Sbjct: 178 PLANYDNVVTAMQIMLDDNAYGLSRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAPNDA 237
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+R+ I+PIN+KY L L+ L V FEYVML GVND+ + A +L+ LV+ +
Sbjct: 238 LRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLDLVRNV 297
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CK NLI FNP S + + + FR+IL AG V +R +RG+D AACGQL
Sbjct: 298 SCKFNLIPFNPFPNSGYDTSKASHIRVFRDILMQAGYVVTVRKTRGEDIDAACGQLA 354
>gi|410627452|ref|ZP_11338191.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
gi|410152944|dbj|GAC24960.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
Length = 380
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 208/353 (58%), Gaps = 9/353 (2%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDF 165
V+ K +++ L + L+++ S +P +A + K +Y + D++ LNK
Sbjct: 4 VMSAKPTKINLLNFNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDF--DQMTNLNKAL 61
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGC 225
++ L E +A + +SDGT K L+ G +ETV IP + R T+CVSSQVGC
Sbjct: 62 REKLKAQCEVKAPEIAYQQGASDGTIKFALRLEGGQEVETVWIP-DADRATLCVSSQVGC 120
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQA--VFARRLLSSEVGS--ITNVVFMGMGEPLHNV 281
A+ C FC T + G R+L+ +EI+ Q V LS++ ITNVV MGMGEPL N+
Sbjct: 121 ALECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNL 180
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
+NV+ A ++M+ + S R+VT+STSG+VP L ++ + ALA+SL+A D++R+ I
Sbjct: 181 KNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDKLRDEI 240
Query: 342 MPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
+PIN+KY + + +R L N KV EYVML G+NDS D A L ++ PCK
Sbjct: 241 VPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLADTPCK 300
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
INLI FNP+ GS ++ +++ ++ F +L+ G V +R +RGDD AACGQL
Sbjct: 301 INLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|289677951|ref|ZP_06498841.1| hypothetical protein PsyrpsF_31988 [Pseudomonas syringae pv.
syringae FF5]
gi|302185748|ref|ZP_07262421.1| hypothetical protein Psyrps6_05363 [Pseudomonas syringae pv.
syringae 642]
gi|422616365|ref|ZP_16685071.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
str. M301072]
gi|424071090|ref|ZP_17808517.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|440720311|ref|ZP_20900730.1| hypothetical protein A979_05905 [Pseudomonas syringae BRIP34876]
gi|440726439|ref|ZP_20906693.1| hypothetical protein A987_10307 [Pseudomonas syringae BRIP34881]
gi|443645105|ref|ZP_21128955.1| 23S Ribosomal RNA methyltransferase N [Pseudomonas syringae pv.
syringae B64]
gi|330895885|gb|EGH28170.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
str. M301072]
gi|407999549|gb|EKG39931.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|440366347|gb|ELQ03431.1| hypothetical protein A979_05905 [Pseudomonas syringae BRIP34876]
gi|440366600|gb|ELQ03679.1| hypothetical protein A987_10307 [Pseudomonas syringae BRIP34881]
gi|443285122|gb|ELS44127.1| 23S Ribosomal RNA methyltransferase N [Pseudomonas syringae pv.
syringae B64]
Length = 382
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++P+N+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|339495157|ref|YP_004715450.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|338802529|gb|AEJ06361.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 382
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 203/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+ + S FR GQ +M W +G D + D + L K ++ L
Sbjct: 7 KVNLLGLTQPQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNLGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEIVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A D +R+ ++PIN
Sbjct: 181 AAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY + +L+ + + +VL EY +L GVND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPMDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL G V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQL 348
>gi|71738083|ref|YP_273575.1| radical SAM protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|257487201|ref|ZP_05641242.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|416018175|ref|ZP_11565169.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
gi|416025545|ref|ZP_11569279.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|422403702|ref|ZP_16480759.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|422594704|ref|ZP_16668994.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422679836|ref|ZP_16738109.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|123761313|sp|Q48LZ7.1|RLMN_PSE14 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71558636|gb|AAZ37847.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298159497|gb|EFI00544.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322924|gb|EFW79014.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
gi|320329953|gb|EFW85941.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330874705|gb|EGH08854.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330985011|gb|EGH83114.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331009183|gb|EGH89239.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 382
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+++ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|319898214|ref|YP_004158307.1| Fe-S protein [Bartonella clarridgeiae 73]
gi|319402178|emb|CBI75709.1| putative Fe-S containing enzyme [Bartonella clarridgeiae 73]
Length = 411
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 203/371 (54%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
N + K S++ L G+S E+ Q ++ Q M LW LY + DE+
Sbjct: 20 NTIVTKQSKLSLIGLSRDEMTQALQVIGVPEHQKGMRVRQLWHWLYVRGV--SNFDEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++M +H + S DGTRK L + + IE V IP R R
Sbjct: 78 ISKPMREMFKDHFSIARPKIVAEQISQDGTRKWLLQFPASGTERPVEIEMVYIPEER-RG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LT EI+ Q + AR L
Sbjct: 137 TLCISSQVGCTLTCSFCHTGTQKLVRNLTTEEILVQLLVARDCLGDFPDKNIPDGAIIPI 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG++P + + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGNGLSLSKRRITLSTSGVIPGIIRTGKE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D++RN ++PIN+KY L LL+E R N ++ FEYVML VND
Sbjct: 257 IGVMLAISLHAVHDKLRNILVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKNVND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DAKRL+ L++GIP KINLI FNP GS + + E++ F +I+ AG +R+ R
Sbjct: 317 SLGDAKRLVQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADIVNKAGYASPIRMPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|28868638|ref|NP_791257.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|422660785|ref|ZP_16723190.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|81732046|sp|Q886Z3.1|RLMN_PSESM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|28851876|gb|AAO54952.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331019383|gb|EGH99439.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 382
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++P+N+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|423711927|ref|ZP_17686232.1| ribosomal RNA large subunit methyltransferase N [Bartonella
washoensis Sb944nv]
gi|395412775|gb|EJF79255.1| ribosomal RNA large subunit methyltransferase N [Bartonella
washoensis Sb944nv]
Length = 409
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 212/389 (54%), Gaps = 30/389 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
+V+ K+ S++ L GM E+ + +++ Q M LW LY + DE+
Sbjct: 20 SVVVKERSKLSLIGMLQDEMVEALKAIGVPERQTRMRVRQLWHWLYVRGV--SNFDEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++M H + S DGTRK L + IETV IP GR
Sbjct: 78 ISKPMQEMFKNHFSIVRPEIIAEQISKDGTRKWLLRFPARGAGRSVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCISSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLVARDCLGDFPDKKTPDGAIVPV 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRTGKE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL+E R N ++ FEYVML VND
Sbjct: 257 IGVMLAISLHAVHDTLRDMLVPINKKYPLALLMEACRNYPGLSNAKRITFEYVMLKDVND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DAKRL+ L++GIP KINLI FNP G+ + + E++ F +++ AG +R+ R
Sbjct: 317 SLGDAKRLVQLLKGIPAKINLIPFNPWPGTNYQCSDWEQIERFADVVNQAGYASPIRMPR 376
Query: 442 GDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
G D +AACGQL + + LR E+ Q
Sbjct: 377 GRDILAACGQLKS----ASERLRKSERLQ 401
>gi|419619737|ref|ZP_14153198.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 51494]
gi|419672789|ref|ZP_14202275.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 51037]
gi|380602241|gb|EIB22526.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 51494]
gi|380654874|gb|EIB71211.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 51037]
Length = 356
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 192/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK+L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKKLVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|365898931|ref|ZP_09436859.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. STM 3843]
gi|365420261|emb|CCE09401.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. STM 3843]
Length = 403
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 204/365 (55%), Gaps = 24/365 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
V P K S L G+S TEL + P Q M LW +Y A +E+ +
Sbjct: 23 VPPAKPS---LLGLSRTELAARLGDIGVPPRQQKMRVQQLWHWIYFRG--ARSFEEMTSV 77
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLV------IETVVIPCNRGRT 215
+KD + L+EH + S+DGTRK L L G +E V IP R
Sbjct: 78 SKDTRAALAEHFTVDRPEVVAEQISNDGTRKWLLRLPSGDTLQKAHEVECVYIP-ETDRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------IT 267
T+CVSSQVGC +NC FC+TG L R+LTA EI+ Q + AR L+ +T
Sbjct: 137 TLCVSSQVGCTLNCAFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWADRETPHGNRLVT 196
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N + V A I +G+ S R++T+STSG+VP + + E LA
Sbjct: 197 NIVMMGMGEPLYNFDAVRDALLIASDNEGIGISRRRITLSTSGVVPNILRAGEEIGVMLA 256
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A DE+RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDA+
Sbjct: 257 ISLHAVRDELRNELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAR 316
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
L+ L++GIP KINLI FNP GS + + E++ +F + AG + +R RG D +A
Sbjct: 317 LLVKLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSEYIFNAGYSSPVRTPRGRDILA 376
Query: 448 ACGQL 452
ACGQL
Sbjct: 377 ACGQL 381
>gi|431926418|ref|YP_007239452.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas stutzeri RCH2]
gi|431824705|gb|AGA85822.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas stutzeri RCH2]
Length = 382
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ ++L+ + S FR GQ +M W +G D + D + L K ++ L
Sbjct: 7 KVNLLGLTQSQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNLGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEIVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + S +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGSIPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +IM+ + G S RKVT+STSG+VP + + + +LA+SL+A + +R+ ++PIN
Sbjct: 181 AAMHIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNNALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L G+ND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLDMLLSACKRYISQLGEKRVLTIEYTLLKGINDQPEHAEQMITLLADIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL G V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQL 348
>gi|419640901|ref|ZP_14172818.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23357]
gi|380618783|gb|EIB37897.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23357]
Length = 356
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 192/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L+KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLSKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDTEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|440744297|ref|ZP_20923601.1| hypothetical protein A988_12848 [Pseudomonas syringae BRIP39023]
gi|440374311|gb|ELQ11047.1| hypothetical protein A988_12848 [Pseudomonas syringae BRIP39023]
Length = 382
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++P+N+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|399075352|ref|ZP_10751508.1| 23S rRNA methyltransferase [Caulobacter sp. AP07]
gi|398039065|gb|EJL32209.1| 23S rRNA methyltransferase [Caulobacter sp. AP07]
Length = 399
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/328 (42%), Positives = 195/328 (59%), Gaps = 15/328 (4%)
Query: 136 GQALMLWKRLYGDDIWAH---CTD--ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGT 190
G+A M +L+ W H TD + + K+ + L+E + + S DGT
Sbjct: 44 GKAKMRATQLFR---WMHHRGVTDFSMMTDVAKETRARLAEQFTVSRPEVVERQVSKDGT 100
Query: 191 RKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
RK L + G+ +ETV IP +CVSSQVGC +NC FC+TG L R+LTAAEIV
Sbjct: 101 RKWLLRMGPGIEVETVYIPSVGRAGALCVSSQVGCTLNCSFCHTGTQALVRNLTAAEIVA 160
Query: 251 QAVFARRLLSS-----EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A+ L+ E ++N+VFMGMGEPL+N+ V A I+ +G+ S R++T
Sbjct: 161 QVQVAKDDLAEWPSDKEDRLLSNIVFMGMGEPLYNLGQVADAIEIISDNEGIAISRRRIT 220
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
VSTSG+VPQL +++ LA+SL+AT D +R+ ++P+N+KY L L+ +R N
Sbjct: 221 VSTSGVVPQLDALGDKTQAMLAISLHATNDALRDELVPLNKKYPLEQLMAGIRAYPGISN 280
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE-F 424
+V FEYVML GVNDS D+A+ L+ L++GIP K+NLI FNP G+ + +D IE F
Sbjct: 281 ARRVTFEYVMLKGVNDSPDEARALVKLIKGIPAKVNLIPFNPWPGTDYE-CSDWATIEAF 339
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQL 452
IL AG + +R RG D +AACGQL
Sbjct: 340 GAILNKAGYSSPIRTPRGRDILAACGQL 367
>gi|389580858|ref|ZP_10170885.1| 23S rRNA m2A2503 methyltransferase [Desulfobacter postgatei 2ac9]
gi|389402493|gb|EIM64715.1| 23S rRNA m2A2503 methyltransferase [Desulfobacter postgatei 2ac9]
Length = 346
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 204/340 (60%), Gaps = 10/340 (2%)
Query: 119 MSFT--ELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFR 176
+ FT +L +W + R +A ++K L+ A +E+ L K + L+EH
Sbjct: 5 LDFTRQDLGEWFENKGIRRFRADQVFKWLHLK--LADSFEEMTDLGKALRGELAEHFFLG 62
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
L L+++ TS D T+K L L DG +E+V+IP + T+CVS+Q GCAMNC+FC T +
Sbjct: 63 TLELENMETSVDATKKFLHRLADGEYVESVLIP-EKEHYTLCVSTQAGCAMNCKFCLTAK 121
Query: 237 MGLKRHLTAAEIVEQAVFARRLLSS---EVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
G KR+LT EIV Q ARR ++ E S++N+VFMGMGEPL N +N++++ ++
Sbjct: 122 TGFKRNLTMGEIVGQVRDARRFVAQQGIEPLSLSNIVFMGMGEPLANYDNLLRSLGVIFD 181
Query: 294 EQ-GLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
G+ FS RKVTVSTSG+ P++ Q ++ LAVSLNAT +E+R+ +MP+NR + +
Sbjct: 182 TDFGMKFSRRKVTVSTSGIAPKIIQLGLDTEVNLAVSLNATDNELRSSLMPVNRTWPIEA 241
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
L+ +E K K+ FEY++++GVNDS A L+ L+ I K+NLI FN H +
Sbjct: 242 LLAACKE-FEMKPRNKITFEYILMSGVNDSDAHAHDLVRLLSPIRAKVNLIPFNEHPQAP 300
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F + +++ F IL T +R S+GDD AACGQL
Sbjct: 301 FKRPSRDRINAFLTILLNRNMTAIVRKSKGDDISAACGQL 340
>gi|62289063|ref|YP_220856.1| hypothetical protein BruAb1_0077 [Brucella abortus bv. 1 str.
9-941]
gi|82699000|ref|YP_413574.1| hypothetical protein BAB1_0074 [Brucella melitensis biovar Abortus
2308]
gi|189023336|ref|YP_001934104.1| hypothetical protein BAbS19_I00700 [Brucella abortus S19]
gi|237814550|ref|ZP_04593548.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A]
gi|260546356|ref|ZP_05822096.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
NCTC 8038]
gi|260755934|ref|ZP_05868282.1| radical SAM protein [Brucella abortus bv. 6 str. 870]
gi|260759158|ref|ZP_05871506.1| radical SAM protein [Brucella abortus bv. 4 str. 292]
gi|260760882|ref|ZP_05873225.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260884958|ref|ZP_05896572.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 9 str. C68]
gi|297247480|ref|ZP_06931198.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196]
gi|376272014|ref|YP_005150592.1| cfr family radical SAM enzyme [Brucella abortus A13334]
gi|423167780|ref|ZP_17154483.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI435a]
gi|423169844|ref|ZP_17156519.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI474]
gi|423175165|ref|ZP_17161834.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI486]
gi|423177984|ref|ZP_17164629.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI488]
gi|423179278|ref|ZP_17165919.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI010]
gi|423182408|ref|ZP_17169045.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI016]
gi|423186650|ref|ZP_17173264.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI021]
gi|423190913|ref|ZP_17177521.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI259]
gi|75497518|sp|Q57FT9.1|RLMN_BRUAB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123740915|sp|Q2YNV3.1|RLMN_BRUA2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807157|sp|B2S7X6.1|RLMN_BRUA1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|62195195|gb|AAX73495.1| conserved hypothetical protein TIGR00048 [Brucella abortus bv. 1
str. 9-941]
gi|82615101|emb|CAJ10030.1| Cytochrome c heme-binding site:Conserved hypothetical protein
48:Radical SAM [Brucella melitensis biovar Abortus 2308]
gi|189018908|gb|ACD71630.1| Conserved hypothetical protein 48 [Brucella abortus S19]
gi|237789387|gb|EEP63597.1| radical SAM enzyme, Cfr family [Brucella abortus str. 2308 A]
gi|260096463|gb|EEW80339.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
NCTC 8038]
gi|260669476|gb|EEX56416.1| radical SAM protein [Brucella abortus bv. 4 str. 292]
gi|260671314|gb|EEX58135.1| radical SAM protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260676042|gb|EEX62863.1| radical SAM protein [Brucella abortus bv. 6 str. 870]
gi|260874486|gb|EEX81555.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 9 str. C68]
gi|297174649|gb|EFH33996.1| cfr family radical SAM enzyme [Brucella abortus bv. 5 str. B3196]
gi|363399620|gb|AEW16590.1| cfr family radical SAM enzyme [Brucella abortus A13334]
gi|374537396|gb|EHR08909.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI486]
gi|374541214|gb|EHR12713.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI435a]
gi|374542080|gb|EHR13569.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI474]
gi|374548284|gb|EHR19735.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI488]
gi|374550797|gb|EHR22232.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI010]
gi|374551254|gb|EHR22688.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI016]
gi|374553603|gb|EHR25017.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI259]
gi|374558329|gb|EHR29723.1| ribosomal RNA large subunit methyltransferase N [Brucella abortus
bv. 1 str. NI021]
Length = 411
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 202/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GMS E+ + + Q M LW LY + ++ ++KD + ML++
Sbjct: 30 LIGMSREEMAAALIAAGVPERQVKMRISQLWHWLYVRGVSDFA--DMRNISKDLRAMLAQ 87
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK LF + IE+V IP GR T+C+SSQVGC
Sbjct: 88 HFTIARPEVVEEQISQDGTRKWLFRFPPRGAGRPVEIESVYIP-EEGRGTLCISSQVGCT 146
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LT+ EI+ Q + AR ++ +E ITN+V M
Sbjct: 147 LTCSFCHTGTQKLVRNLTSEEILAQLLTARDRLGDFPDKDTPDGAMVPAEGRKITNIVMM 206
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S ++T+STSG+VP++ + +E LA+SL+A
Sbjct: 207 GMGEPLYNFEEVKKALLIASDGDGLSLSKCRITLSTSGVVPEIYRTGDEIGVMLAISLHA 266
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LI+ RE N ++ FEYVML +NDS DDAK L+ L
Sbjct: 267 VRDELRDILVPINKKYPLAELIKACREYPGLSNAKRITFEYVMLKDINDSLDDAKLLVKL 326
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+QGIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 327 LQGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADYVNAAGYASPIRTPRGRDILAACGQL 386
>gi|374366356|ref|ZP_09624437.1| hypothetical protein OR16_10354 [Cupriavidus basilensis OR16]
gi|373102140|gb|EHP43180.1| hypothetical protein OR16_10354 [Cupriavidus basilensis OR16]
Length = 384
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 188/328 (57%), Gaps = 13/328 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W +G A D + L K ++ L+ AE R+ ++ S+DGTRK
Sbjct: 27 FRARQ-LQRWIHQFG----ASRFDAMSDLAKSLREKLATRAEIRSPAVITDNLSADGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 82 WLLDVGAGDAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQL 140
Query: 253 VFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
A + +++G I+NVV MGMGEPL N + V+ A +M+ + S R+VT
Sbjct: 141 WMAEFAMRAQLGRGAKDDRVISNVVMMGMGEPLLNYDQVVPAMRLMLDDHAYGLSRRRVT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 201 LSTSGVVPMMDRLAKDLPVALAVSLHASNDPLRDMLVPLNKKYPLAELMAACRRYLEFAP 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+ FEY ML GVND + A+ L+ LV +PCK NLI FNP S + +E++ F
Sbjct: 261 RDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNEQIRRFA 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 321 QVLMDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
Length = 349
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/344 (40%), Positives = 203/344 (59%), Gaps = 13/344 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNK---DFKKMLSEH 172
LK +S EL W + +A L+ +Y + + DE +N ++ L E
Sbjct: 7 LKSLSRKELLMWFEKRGYPSFRASQLFNWIYRNGV-----DEFSRMNNLPLVLREELEEK 61
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
+ L + + + DGT K L+ L DG IE+V IP R +VC+SSQVGC++ C+FC
Sbjct: 62 SYLTKLKIVNKSKAEDGTVKYLWELKDGETIESVFIPYEGSRNSVCISSQVGCSLGCKFC 121
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSE-VGS--ITNVVFMGMGEPLHNVENVIKAAN 289
TG GL R+LT EIV+Q + ++ +S++ GS ++NVVFMGMGEPL N+++V+KA
Sbjct: 122 ATGLTGLIRNLTPGEIVDQVLQIQKEISNDKYGSPRVSNVVFMGMGEPLANMKSVLKAIE 181
Query: 290 IMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKY 348
IM +GL+ RK+TVSTSGLVPQ+K+ ++ LA+SLNA + +R+ +MPINRK+
Sbjct: 182 IMNDSKGLNIGKRKITVSTSGLVPQIKELADKKLQIVLAISLNAPNNALRDKLMPINRKF 241
Query: 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 408
L L+E +R N +V FEYV+L G NDS + A +L+ L+ I +NLI FNP
Sbjct: 242 PLEKLLEAVRYYTEVTNR-RVTFEYVLLKGTNDSPEHAFQLVNLLSDIHGHVNLIPFNPV 300
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++F + E + F++IL G +R RG AACGQL
Sbjct: 301 QETEFKRPSKETVNRFKDILINNGVETTVRQERGTRIEAACGQL 344
>gi|114332136|ref|YP_748358.1| radical SAM protein [Nitrosomonas eutropha C91]
gi|122313183|sp|Q0AE39.1|RLMN_NITEC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114309150|gb|ABI60393.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosomonas eutropha C91]
Length = 379
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 187/338 (55%), Gaps = 26/338 (7%)
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
+ L+ W +G + +D L K F++ L E A + T+ DGTRK L
Sbjct: 26 ARQLLRWVHRFGKTEFIEMSD----LAKTFRQKLMERAVVHPPEIISDHTAGDGTRKWLL 81
Query: 196 MLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
G +E V IP NRG T+CVSSQVGCA+ C FC TGR G R+L+ AEI+ Q +
Sbjct: 82 STGTGNAVEMVFIPEPNRG--TLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWW 139
Query: 255 ARRLLSSEVGS-------------------ITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
A RLL +VG +TNVV MGMGEPL N ENV+ A ++M+ +
Sbjct: 140 ANRLLEGQVGELFSPDVAQIRADNTDTRRPVTNVVMMGMGEPLANFENVVTALDLMLSDD 199
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 355
S R+VTVSTSGLVP L + ALAVSL+A D +R+ ++PIN+KY + L+
Sbjct: 200 AYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLA 259
Query: 356 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP 415
L + FEYVML VNDS A+ L+ +V+ IPCK+NLI FN GS +
Sbjct: 260 ACERYLPAAPRDFITFEYVMLRDVNDSIALARELVQVVRNIPCKLNLIPFNTFAGSGYER 319
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ + + FR++L AG +R +RGDD AACGQL
Sbjct: 320 SNTDAIDNFRDVLMQAGIVTTVRKTRGDDIAAACGQLA 357
>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
Length = 380
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 207/351 (58%), Gaps = 17/351 (4%)
Query: 112 SRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+V L G+S +++++ + FR Q ++ W + D + TD + K ++
Sbjct: 5 QKVNLLGLSRPQMEEFFLTMGEKKFR-AQQVLKWIHHHQADSFEQMTD----VGKALRQK 59
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
LSE AE R + S DGTRK +F +D+G +ETV IP R R T+CVSSQVGCA++
Sbjct: 60 LSEVAEIRGPKVTHESISRDGTRKWVFEMDNGGAVETVFIPDGR-RGTLCVSSQVGCAVD 118
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGEPLHNVENV 284
C FC TG+ G +R +T+AEI+ Q A R +G ITNVV MGMGEPL N + V
Sbjct: 119 CSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKV 178
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM + G +++TVSTSG++P++ Q + + +LAVSL+A DE+RN ++P+
Sbjct: 179 LTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLAVSLHAPNDELRNQLVPL 238
Query: 345 NRKYKLGLLI---ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
NRKY L L+ ++ + + ++N + EYVML VND + A++L+ L+ GIP K+N
Sbjct: 239 NRKYPLKDLMAACKSYSKNITHRHN-TITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVN 297
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
LI FNP + + + ++EF L G +R +RGDD AACGQL
Sbjct: 298 LIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDIDAACGQL 348
>gi|395778913|ref|ZP_10459424.1| ribosomal RNA large subunit methyltransferase N [Bartonella
elizabethae Re6043vi]
gi|423714761|ref|ZP_17688985.1| ribosomal RNA large subunit methyltransferase N [Bartonella
elizabethae F9251]
gi|395417088|gb|EJF83440.1| ribosomal RNA large subunit methyltransferase N [Bartonella
elizabethae Re6043vi]
gi|395430980|gb|EJF97008.1| ribosomal RNA large subunit methyltransferase N [Bartonella
elizabethae F9251]
Length = 408
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 205/371 (55%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
+V+ ++ S++ L G+S E+ Q +++ Q M LW LY + DE+
Sbjct: 20 DVVVQESSKLSLIGLSQDEIVQALKTLGVPERQTRMRARQLWHWLYVRGV--SNFDEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++ H + S DGTRK L + IETV IP GR
Sbjct: 78 ISKAMQETFKRHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRPVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCHTGTQMLVRNLTAEEILAQLLVARDCLGDFPDKDTPDGAIVPV 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG++P + + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVIPGIIRTGEE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL++ R N ++ FEYVML +ND
Sbjct: 257 IGVMLAISLHAVHDTLRDMLVPINKKYPLALLMDACRNYPGLSNAKRITFEYVMLKDIND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|424066438|ref|ZP_17803904.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408002287|gb|EKG42546.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 387
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 15 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 69
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 70 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 128
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 129 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 188
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++P+N+KY
Sbjct: 189 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKY 248
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 249 PLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 308
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 309 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 353
>gi|404379277|ref|ZP_10984342.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
gi|404294703|gb|EJZ50198.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
Length = 364
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 198/341 (58%), Gaps = 12/341 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G A D++ L K + L+++A+ +L S DGTRK
Sbjct: 26 FRAKQ-VMRWIHQSG----AENFDQMTDLAKSLRAKLNDNAQVGIPALITSQESKDGTRK 80
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+SSQVGCA+ C FC TGR G R+L+ AEI+ Q
Sbjct: 81 WLLDVGTGNGVETVFIPETE-RGTLCISSQVGCALECTFCSTGRQGFNRNLSTAEIIGQL 139
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + L + I+NVV MGMGEPL N +NVI A +IM+ + G S R+VTVSTS
Sbjct: 140 WWANKALGVTPKNERVISNVVMMGMGEPLANYDNVINALSIMLDDHGYGLSRRRVTVSTS 199
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VPQ+ + + ALAVSL+A+ D+VR+ I+P+N+KY L L+ L +
Sbjct: 200 GMVPQMDRLKEDMPVALAVSLHASNDQVRDKIVPLNKKYPLKELMAACNRYLMKAPRDFI 259
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML G+ND + A L+ LV+ PCK NLI FNP S + ++++ + F+ IL
Sbjct: 260 TFEYVMLDGINDKPEHAHELVQLVKDTPCKFNLIPFNPFPNSGYERSSNKNINIFKEILM 319
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
A +R +RGDD AACGQL G +Q R EK+Q
Sbjct: 320 EADLVTTVRKTRGDDIDAACGQLA--GQVQDKTKR-QEKWQ 357
>gi|340777431|ref|ZP_08697374.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter aceti NBRC
14818]
Length = 393
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 202/347 (58%), Gaps = 14/347 (4%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L G+S EL + + + +P + LW +Y + TD ++ + K ++ L+E
Sbjct: 37 LVGLSREELTEELVAIGEKPFRTKQLWHWIYHQGV----TDFTKMTSIAKPLQQKLAERF 92
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR-GRTTVCVSSQVGCAMNCQFC 232
+ TS D TRK LF DG ETV IP R R VC+SSQVGC ++C FC
Sbjct: 93 IVGRPDPAVVQTSQDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFC 152
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLS---SEVGS----ITNVVFMGMGEPLHNVENVI 285
+TG L R+L AAEIV Q + AR + S G ++ +V MGMGEPL+N ENV
Sbjct: 153 HTGTQKLVRNLGAAEIVGQFMAARDSYNEWPSPKGDTPRLLSTIVLMGMGEPLYNYENVA 212
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
KA I++ +G+ S R++T+STSG+VP + + +E LAVSL+A +++R+ I+P+N
Sbjct: 213 KAMRIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLRDEIVPLN 272
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
RKY + +I R N ++ FEY+ML G+NDS DA+ L+ L++GIP K+NLI F
Sbjct: 273 RKYPIEEVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLIRGIPAKVNLIPF 332
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
N GS + P+T E+ +F I+ AG +R RG D +AACGQL
Sbjct: 333 NVWPGSDYKPSTREQQAKFAQIVMDAGFASPIRTPRGRDILAACGQL 379
>gi|146337410|ref|YP_001202458.1| pyruvate formate lyase activating enzyme 2 (yfgB) [Bradyrhizobium
sp. ORS 278]
gi|205829673|sp|A4YJY2.1|RLMN_BRASO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146190216|emb|CAL74208.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 278]
Length = 403
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/326 (42%), Positives = 190/326 (58%), Gaps = 17/326 (5%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG 200
LW LY A DE+ ++KD + L+E + S+DGTRK L L G
Sbjct: 59 LWHWLYFRG--ARSFDEMTSVSKDTRNGLAERFTVDRPEVVAEQISNDGTRKWLLRLPSG 116
Query: 201 ------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
+E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV Q +
Sbjct: 117 DDLQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCAFCHTGTQRLVRNLTAGEIVGQIMV 175
Query: 255 ARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV 306
AR L+ ITN+V MGMGEPL+N E V A I+ +G+ S R++T+
Sbjct: 176 ARDRLNDWADRETPHGNRLITNIVMMGMGEPLYNFEAVRDALLIVSDNEGIGISRRRITL 235
Query: 307 STSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN 366
STSG+VP +K+ E LA+SL+A DE+RN ++P+NRKY + L++ R+ N
Sbjct: 236 STSGVVPNIKRAGEEIGVMLAISLHAVRDELRNELVPLNRKYPIAELLQACRDYPGASNA 295
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
++ FEYVML GVNDS DDA+ L+ L++GIP KINLI FNP GS + + E++ +F
Sbjct: 296 RRITFEYVMLKGVNDSLDDARLLVKLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSE 355
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQL 452
+ AG + +R RG D +AACGQL
Sbjct: 356 YVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98]
Length = 358
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/278 (48%), Positives = 172/278 (61%), Gaps = 10/278 (3%)
Query: 186 SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTA 245
S DGTRK L L DG IE V IP + T C+S+QVGCAM C FC TG+MGL R+LTA
Sbjct: 75 SVDGTRKFLLALADGKRIEAVFIP-DTPAMTFCISTQVGCAMACGFCLTGKMGLVRNLTA 133
Query: 246 AEIVEQAVFARRLLSSEVG---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
EI Q R+L++ G N+V MGMGEPLHN +N +KA ++ E GL SPR
Sbjct: 134 GEIAGQV----RVLAAATGLADQAFNIVLMGMGEPLHNYDNTMKALRMLHSEHGLSISPR 189
Query: 303 KVTVSTSGLVPQLKQFLNESNCA-LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
+VT+ST G+VP L++ E LAVSL+ATTDE R+ ++P NRKY L +I +
Sbjct: 190 RVTLSTVGIVPGLERLAREPLMPNLAVSLHATTDEQRSALVPPNRKYPLADIIAAC-QRF 248
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
K ++ FEYV+L GVNDS +DA+RL+ L+ GI K+NLI NP G F +D ++
Sbjct: 249 PLKQRSRITFEYVLLDGVNDSPEDARRLVRLLAGIRAKVNLIPLNPAPGIPFERPSDARV 308
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
F ILA TV +R SRG D AACGQL G I+
Sbjct: 309 DRFAQILADRHLTVSVRKSRGQDIRAACGQLIVDGGIK 346
>gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
Length = 426
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 217/378 (57%), Gaps = 23/378 (6%)
Query: 90 TIEDYCSDA--GGGDNINVLPKK-GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKR 144
T+ D +DA I+V P+K + L ++ +++++ +P +A +M W
Sbjct: 33 TMSDMTTDAQCATSSAISVTPEKTNQKTNLLDLNRKQMREFFAQMGEKPFRADQVMKW-- 90
Query: 145 LYGDDIWAHCTDELE---GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL 201
I+ +C D+ + +NK + L E AE RA + D SSDGT K + D L
Sbjct: 91 -----IYHYCYDDFDQMTDINKVLRAKLKEVAEIRAPEVADEQRSSDGTIKWAIKVGDQL 145
Query: 202 VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS 261
V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S
Sbjct: 146 V-ETVYIP-EADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGS 203
Query: 262 EVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQ 317
S ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT+STSG+VP L +
Sbjct: 204 LKSSGRRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDK 263
Query: 318 FLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY--KVLFEYVM 375
+ + ALA+SL+A TD++R+ I+PIN+KY + + ++ L N +V EYVM
Sbjct: 264 LGDMIDVALAISLHAPTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVM 323
Query: 376 LAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTV 435
L VNDS + A +L ++ P KINLI +NP G+ + +++ ++ F +L G G T
Sbjct: 324 LDHVNDSVEQAHQLAECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTT 383
Query: 436 FLRLSRGDDQMAACGQLG 453
+R +RGDD AACGQL
Sbjct: 384 IVRKTRGDDIDAACGQLA 401
>gi|192288832|ref|YP_001989437.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
gi|254807199|sp|B3Q9D7.1|RLMN_RHOPT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|192282581|gb|ACE98961.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
Length = 399
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 195/333 (58%), Gaps = 17/333 (5%)
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 193
R +A LW +Y A E+ ++K+ + L+EH + S+DGTRK
Sbjct: 48 RKMRAQQLWHWMYVRG--ARDFSEMTNVSKEMRATLAEHFTVDRPEVVAEQISADGTRKW 105
Query: 194 LFMLDDG------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
L L G +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA E
Sbjct: 106 LLRLPSGGDGQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCAFCHTGTQRLVRNLTAGE 164
Query: 248 IVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
IV Q + AR L + ITN+V MGMGEPL+N + V A I+ +G+
Sbjct: 165 IVGQVMVARDRLGDWIDRETPNGNRLITNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGI 224
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R++T+STSG+VP +K+ +E LA+SL+A DE+R+ ++P+NRKY L L++ R+
Sbjct: 225 SRRRITLSTSGVVPNIKRTGDEIGVMLAISLHAVRDELRDELVPLNRKYPLKELLQACRD 284
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N ++ FEYVML GVNDS DDA++L+ L++GIP KINLI FNP GS + + +
Sbjct: 285 YPGASNARRITFEYVMLKGVNDSLDDARKLVQLLKGIPAKINLIPFNPWPGSNYECSDWD 344
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ +F + AG + +R RG D +AACGQL
Sbjct: 345 QIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 377
>gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
gi|225203712|gb|EEG86066.1| 23S rRNA m2A2503 methyltransferase [Proteus penneri ATCC 35198]
Length = 357
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 196/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + TD +NK + L E AE +A + + S+DGT K
Sbjct: 13 FRADQ-IMKWMYHYCYDDFDQMTD----INKVLRNKLKEIAEIKAPEVSEEQRSTDGTIK 67
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 68 WAIKVGDQQV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQV 125
Query: 253 VFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ S E G ITNVV MGMGEPL N+ NVI A IM+ + G S R+VTVST
Sbjct: 126 WRAAKIIGSLKETGRRPITNVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVST 185
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALA+SL+A TD++R+ I+PIN+KY + + +E +R + N
Sbjct: 186 SGVVPALDKLADAVDVALAISLHAPTDDIRDEIVPINKKYNIAMFLEGVRRYIAKSNANQ 245
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 246 GRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSK 305
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G T +R +RGDD AACGQL
Sbjct: 306 VLMEYGFTTIVRKTRGDDIDAACGQLA 332
>gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375137029|ref|YP_004997679.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|427423139|ref|ZP_18913305.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|425700239|gb|EKU69830.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
Length = 411
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 210/367 (57%), Gaps = 27/367 (7%)
Query: 106 VLPKKGSRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEG 160
V+P ++V L GMS EL+++ + FR GQ +M W Y TD E+
Sbjct: 23 VIPAAENKVNLLGMSRPELEKFFEDIGEKKFRAGQ-VMKWIHQY------FVTDFAEMTN 75
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRG---RT 215
++ + L + E +A + S DGTRK +F + +G ++ETV+IP R
Sbjct: 76 ISGKLRAKLEQICEIKAPEVVHRHYSKDGTRKWVFRVGEGAGSLVETVLIPAEDKTGLRK 135
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNV 269
T+C+SSQVGCA++C FC TG+ G +R LT EI+ Q A EV S+TNV
Sbjct: 136 TLCISSQVGCALDCSFCSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPVAERERSVTNV 195
Query: 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVS 329
V MGMGEPL N + V+ + IM+ + S R+VT+STSG+VP++ Q + + ALA+S
Sbjct: 196 VMMGMGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAIS 255
Query: 330 LNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK----VLFEYVMLAGVNDSFDD 385
L+A DE+RN ++PIN+KY L LI + + N V EYVML GVND +
Sbjct: 256 LHAPNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEH 315
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A+++I L++ +P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD
Sbjct: 316 AQQMIKLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDI 375
Query: 446 MAACGQL 452
AACGQL
Sbjct: 376 DAACGQL 382
>gi|365850692|ref|ZP_09391154.1| 23S rRNA m2A2503 methyltransferase [Yokenella regensburgei ATCC
43003]
gi|364566893|gb|EHM44571.1| 23S rRNA m2A2503 methyltransferase [Yokenella regensburgei ATCC
43003]
Length = 388
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/355 (39%), Positives = 206/355 (58%), Gaps = 14/355 (3%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKD 164
+P K ++ L ++ +++++ + +P +A +M W Y D + DE+ +NK
Sbjct: 15 VPNKNGKINLLDLNRQQMREFFKDMGEKPFRADQVMKWMYHYCSDDF----DEMTDINKV 70
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L E AE RA + + SSDGT K + D V ETV IP R T+CVSSQVG
Sbjct: 71 LRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSSQVG 128
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEPLHN 280
CA+ C+FC T + G R+L +EI+ Q A +++ + ITNVV MGMGEPL N
Sbjct: 129 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGTRPITNVVMMGMGEPLLN 188
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+
Sbjct: 189 LTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDE 248
Query: 341 IMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
I+PIN+KY + + +R L N +V EYVML VND + A +L L++ PC
Sbjct: 249 IVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPC 308
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 309 KINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|421855029|ref|ZP_16287411.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403189529|dbj|GAB73612.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 411
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 208/360 (57%), Gaps = 27/360 (7%)
Query: 113 RVLLKGMSFTELQQWVR---SHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKK 167
+V L GMS EL+ + FR GQ +M W Y TD E+ ++ +
Sbjct: 30 KVNLLGMSRAELENFFEKLGEKKFRAGQ-VMKWMHQY------FVTDFAEMTNISGKLRA 82
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRG---RTTVCVSSQ 222
L + E +A + S DGTRK +F + DG ++ETV+IP R T+C+SSQ
Sbjct: 83 KLEQLCEIKAPEVVHRHYSKDGTRKWVFRVGDGTGSLVETVLIPAEDKTGLRKTLCISSQ 142
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMGMGE 276
VGCA++C FC TG+ G +R LT EI+ Q A + +V S+TNVV MGMGE
Sbjct: 143 VGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPVAERTRSVTNVVMMGMGE 202
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N + V+ + +IM+ + S R+VT+STSG+VP++ Q + + ALA+SL+A DE
Sbjct: 203 PLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDE 262
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNN----YKVLFEYVMLAGVNDSFDDAKRLIGL 392
+RN ++PIN+KY L LI + ++ N V EYVML GVNDS + A+++I L
Sbjct: 263 LRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQMIRL 322
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ +P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD AACGQL
Sbjct: 323 LKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
Length = 373
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 213/372 (57%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +KG R L FT++ + FR Q LM W +G + T+ +N
Sbjct: 7 NLLDLDRKGLRAL-----FTDMGE----KPFRADQ-LMKWIYHFGVSDFEVMTN----IN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L+ E +A + S+DGT K + DG +ETV IP R T+CVSSQ
Sbjct: 53 KVLRAKLAASCEIKAPEISSYQKSADGTIKFSINVGDGQEVETVYIP-EGDRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPL 278
VGCA+ C FC T + G R+LT +EI+ Q A F + + ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIGFIKKTGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N++NVI A +IM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE+R
Sbjct: 172 LNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAANDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++P+N+KY L + ++R + N +V EYVML +NDS D A L L++
Sbjct: 232 DVLVPVNKKYPLQEFLASIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RG+D AACGQL G
Sbjct: 292 PCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGEDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|213971521|ref|ZP_03399632.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
gi|301386126|ref|ZP_07234544.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato Max13]
gi|302060174|ref|ZP_07251715.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato K40]
gi|302135117|ref|ZP_07261107.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213923713|gb|EEB57297.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
Length = 382
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 RLMMDDLGYGISKRRVTLSTSGVVPMIDELSRHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|348028465|ref|YP_004871151.1| ribosomal RNA large subunit methyltransferase N [Glaciecola
nitratireducens FR1064]
gi|347945808|gb|AEP29158.1| ribosomal RNA large subunit methyltransferase N [Glaciecola
nitratireducens FR1064]
Length = 393
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 191/331 (57%), Gaps = 12/331 (3%)
Query: 128 VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSS 187
+ FR Q LM W G+ + D + +NKD + L + A + + +S
Sbjct: 42 INEKPFRADQ-LMKWIYQAGESDF----DAMTNMNKDLRAKLKNYCVIEAPVISEHQQAS 96
Query: 188 DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
DGT K +L+ G +ETV IP R T+CVSSQVGCA+ C FC T + G R+L+ AE
Sbjct: 97 DGTIKFAMLLEGGQEVETVWIP-ETDRATLCVSSQVGCALECTFCSTAQQGFNRNLSIAE 155
Query: 248 IVEQ----AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
I+ Q A F + ITNVV MGMGEPL N++NV+ A IM+ + G S R+
Sbjct: 156 IIGQVWRVATFIGMSKDTSKRPITNVVMMGMGEPLLNLKNVVPAMRIMLDDYGFGLSKRR 215
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL-- 361
VT+STSG+VP L ++ + ALA+SL+A D++R+ I+P+N+KY + + +R L
Sbjct: 216 VTLSTSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIVPVNKKYPIEEFLAGVRRYLAK 275
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N KV EYVML +NDS D A L ++ PCKINLI FNP+ GS +T +++ +M
Sbjct: 276 SKANQGKVTVEYVMLNHINDSTDQAHALAKVLADTPCKINLIPFNPYPGSPYTCSSNSRM 335
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F +L TV +R +RGDD AACGQL
Sbjct: 336 DRFSKVLMDYNFTVVIRKTRGDDIDAACGQL 366
>gi|395791654|ref|ZP_10471110.1| ribosomal RNA large subunit methyltransferase N [Bartonella
alsatica IBS 382]
gi|395407957|gb|EJF74577.1| ribosomal RNA large subunit methyltransferase N [Bartonella
alsatica IBS 382]
Length = 409
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 205/371 (55%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
N++ K+ ++ L G+S E+ Q ++ Q M LW LY + DE+
Sbjct: 20 NIVVKERFKLPLIGLSQDEMIQALKEVGVPGYQTRMRVRQLWHWLYVRGV--SNFDEMRN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
++K ++ML H + S DGTRK L + IETV IP GR
Sbjct: 78 ISKPMQEMLKSHFSIARPEIIGEQISKDGTRKWLLRFPARGAGRPVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLIARDCLGDFPDRNTPDGAIVPV 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N + V KA I GL S R++T+STSG+VP++ + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFDAVKKALLIASDGNGLSLSKRRITLSTSGVVPEIIRAGEE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +RN ++PIN+KY L LL++ R N ++ FEYVML +ND
Sbjct: 257 IGVMLAISLHAVHDTLRNVLVPINKKYPLALLMDACRNYPGLSNAKRITFEYVMLKDIND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAK+L+ L++ IP KINLI FNP GS + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKQLVQLLKNIPAKINLIPFNPWPGSNYQCSDWEQIERFADVINQAGYASPIRIPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
Length = 388
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + TD +
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTD----I 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML +ND + A +L L++
Sbjct: 246 RDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|167627914|ref|YP_001678414.1| radical SAM superfamily protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|205829762|sp|B0U083.1|RLMN_FRAP2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|167597915|gb|ABZ87913.1| radical SAM superfamily protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 370
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 187/314 (59%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E+AE + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDSMTDLGKNLRNKLKENAEIVIPKVVFNKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQVGC +NC FC TG+ G R+L++AE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
S+TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFSVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A TD +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHAPTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA++LI L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEQLIELLRSREVPAKINLIPFNPYPGTPYRKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|333901478|ref|YP_004475351.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas fulva
12-X]
gi|333116743|gb|AEF23257.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas fulva
12-X]
Length = 382
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 203/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G D +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFESLGEKRFRAGQ-VMKWIHHFGVDDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
A R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 EAAAYIRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G LT+AEI+ Q A + S +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSDLTSAEIIGQVWIANKSFGSVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A DE+R+ ++PIN
Sbjct: 181 SAMKIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRSQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L VND + A++++ L+ +PCKINLI
Sbjct: 241 KKYPLDMLLAACKRYISRLGEKRVLTVEYTLLKDVNDKLEHAEQMVALLADVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+ +L AG V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQELLQKAGHNVTVRTTRGEDIDAACGQL 348
>gi|319407894|emb|CBI81546.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 405
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/367 (40%), Positives = 206/367 (56%), Gaps = 26/367 (7%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKD 164
K+ S++ L G+S E+ Q + Q M LW LY + +H DE+ + K
Sbjct: 20 KERSKLSLIGLSHDEMVQALEEIGVPKHQTRMRVRQLWHWLYVRGV-SH-FDEMLNIAKP 77
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCV 219
++ML H + + TS+DGT K L + IETV IP GR T+C+
Sbjct: 78 MRRMLQNHFSIARPEIVEEQTSNDGTCKWLLRFPARGAGKPVEIETVYIP-EEGRGTLCI 136
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------------SSEVGS 265
SSQVGC + C FC+TG L R+LTA EI+ Q + AR L S E
Sbjct: 137 SSQVGCTLTCSFCHTGTQTLVRNLTAEEILAQLLVARDRLGDFPEKNTPDGAAVSIEGRK 196
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
+TN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E
Sbjct: 197 VTNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIIRAGKEIGVM 256
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LA+SL+A D +R+ ++PIN+KY L LL++ R N ++ FEYVML VNDS DD
Sbjct: 257 LAISLHAVHDALRDILVPINKKYPLTLLMDACRNYPGLSNAKRITFEYVMLKDVNDSLDD 316
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
AK+L+ L++GIP KINLI FN GS + + E++ F +++ AG +R+ RG D
Sbjct: 317 AKQLVQLLKGIPAKINLIPFNSWPGSHYQCSDWEQIERFADVINQAGYASPVRMPRGRDI 376
Query: 446 MAACGQL 452
+AACGQL
Sbjct: 377 LAACGQL 383
>gi|262276957|ref|ZP_06054750.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
gi|262224060|gb|EEY74519.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
Length = 357
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 177/280 (63%), Gaps = 4/280 (1%)
Query: 175 FRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYT 234
F +K+ S DGT K L L+D ++ETV IP + +T+C+SSQVGC +NC+FC+T
Sbjct: 66 FSRPKIKNKQVSKDGTIKWLLELNDKNLVETVYIP-SETHSTLCISSQVGCTLNCKFCHT 124
Query: 235 GRMGLKRHLTAAEIVEQAVFARRLLSS--EVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
G L ++L++ EI+ Q + A+ L+ E I N+V+MGMGEP +N EN+ K+ I+
Sbjct: 125 GIQPLVKNLSSNEIISQILIAKDELNDWKEQKKINNIVYMGMGEPFYNFENIKKSVEILK 184
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
E GL+FS +K+TVSTSG+ P +K+ NE LA+SL+A +E+RN IMPIN+KY +
Sbjct: 185 DENGLNFSNKKITVSTSGISPNIKKAANEIGTYLALSLHAPNNEIRNEIMPINKKYNIEN 244
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
+IE + +N K+ EYV+L VND+ AK L ++ PCK+NLI FNP G +
Sbjct: 245 IIEHCSQYAK-ENGEKIFIEYVLLKDVNDTEQCAKELSKIMSQFPCKLNLIQFNPWPGVK 303
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ T E+ +F I+ G V LR SRGDD + ACGQL
Sbjct: 304 YKTATKEQTSKFIEIIKKNGHVVTLRKSRGDDILGACGQL 343
>gi|395227152|ref|ZP_10405480.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|420366694|ref|ZP_14867527.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|421845430|ref|ZP_16278584.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|424731693|ref|ZP_18160275.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|391324001|gb|EIQ80616.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|394719335|gb|EJF24940.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|411773333|gb|EKS56892.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|422893831|gb|EKU33647.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|455641364|gb|EMF20535.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii GTC 09479]
Length = 388
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 211/359 (58%), Gaps = 16/359 (4%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEG 160
I +P K ++ L ++ +++++ + +P +A + K +Y +C+D ++
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMY-----HYCSDNFDDMTD 66
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVS
Sbjct: 67 INKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVS 124
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGE
Sbjct: 125 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKATGVRPITNVVMMGMGE 184
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE
Sbjct: 185 PLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDE 244
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ I+PIN+KY + + +R L N +V EYVML +ND + A +L L++
Sbjct: 245 IRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLAELLK 304
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 305 DTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
Length = 399
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 212/369 (57%), Gaps = 19/369 (5%)
Query: 96 SDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWA 152
SD D + ++ ++V L GMS L+ + S FR Q L W G +A
Sbjct: 3 SDVSAVDAVEIVGD-AAKVNLLGMSQGRLEAFFESLGEKKFRATQVLK-WVHQLGVTDFA 60
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR 212
T+ ++K ++ L++ AE R + + S+DGTRK L + G IETV IP +
Sbjct: 61 QMTN----ISKALRERLADIAEVRIPEVIEQWDSTDGTRKFLIRVGGGNAIETVFIP-DG 115
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS----- 265
R T+CVSSQVGC+++C FC TG+ G R LT+ EI+ Q A + E G+
Sbjct: 116 ERGTLCVSSQVGCSLDCSFCATGKQGFNRDLTSDEIIGQVWIAAKSFGQLQEGGARGDRK 175
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
+TNVV MGMGEPL N ENV++A ++M+H+ S R+VT+STSG+VPQL + ++
Sbjct: 176 VTNVVLMGMGEPLLNFENVVEAMHLMMHDNCYGISKRRVTLSTSGVVPQLDRLGKYTDAC 235
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF--KNNYKVLFEYVMLAGVNDSF 383
LA+SL+A DE+RN ++PIN+KY + L+ + + + + K+ EY ++ VND
Sbjct: 236 LAISLHAPNDELRNQLVPINKKYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRI 295
Query: 384 DDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
+ A L+ L++ +P KINLI FNP S + ++ + F+ IL AG T +R +RGD
Sbjct: 296 EHAHELVELLKDVPVKINLIPFNPFGLSNYKKVSNNALRRFQQILIDAGYTATVRTTRGD 355
Query: 444 DQMAACGQL 452
D AACGQL
Sbjct: 356 DIDAACGQL 364
>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
gi|123050394|sp|Q0VND7.1|RLMN_ALCBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
borkumensis SK2]
Length = 381
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 206/351 (58%), Gaps = 17/351 (4%)
Query: 112 SRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+V L G+S +++++ + FR Q ++ W + D + TD + K ++
Sbjct: 5 QKVNLLGLSRPQMEEFFLTMGEKKFR-AQQVLKWIHHHQADSFEQMTD----VGKALRQK 59
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
LSE AE R + S DGTRK +F +D+G +ETV IP R R T+CVSSQVGCA++
Sbjct: 60 LSEVAEIRGPKVTHESISRDGTRKWVFEMDNGGAVETVFIPDGR-RGTLCVSSQVGCAVD 118
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--SEVGS--ITNVVFMGMGEPLHNVENV 284
C FC TG+ G +R +T+AEI+ Q A R +G ITNVV MGMGEPL N + V
Sbjct: 119 CSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKV 178
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM + G +++TVSTSG++P++ Q + + +LAVSL+A DE+RN ++P+
Sbjct: 179 LTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLAVSLHAPNDELRNQLVPL 238
Query: 345 NRKYKLGLLIETLR---EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
NRKY L L+ + + + ++N + EYVML VND + A++L+ L+ GIP K+N
Sbjct: 239 NRKYPLKDLMAACKRYSKNITHRHN-TITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVN 297
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
LI FNP + + + ++EF L G +R +RGDD AACGQL
Sbjct: 298 LIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDIDAACGQL 348
>gi|170723489|ref|YP_001751177.1| radical SAM protein [Pseudomonas putida W619]
gi|205829826|sp|B1JDQ5.1|RLMN_PSEPW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|169761492|gb|ACA74808.1| radical SAM enzyme, Cfr family [Pseudomonas putida W619]
Length = 381
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G D +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFDSIGEKRFRAGQ-VMKWIHHFGVDDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRPPEVVSEDISADGTRKWVIRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKMLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|260752519|ref|YP_003225412.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|397676167|ref|YP_006517705.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|258551882|gb|ACV74828.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|395396856|gb|AFN56183.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 391
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 209/369 (56%), Gaps = 20/369 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
+ +K R+ L G+S +++ ++S QA + LW +Y A D + +
Sbjct: 20 IATRKDGRIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRG--AVAFDGMTDI 77
Query: 162 NKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVC 218
K + L+EH A+S +++T S+DGTRK L DDG E V IP + R T+C
Sbjct: 78 AKTMRPWLAEHF---AISRPEVVTMQISTDGTRKWLLKTDDGYDYEMVFIP-DADRGTLC 133
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMG 273
+SSQ+GC +NC+FC TG M L R+LT EIV Q + AR L E +TNVV MG
Sbjct: 134 ISSQIGCTLNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPEGRLLTNVVMMG 193
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL+N +NV A +++ G+ S R++T+STSG+VP + + E LAVSL+A
Sbjct: 194 MGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAV 253
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
T VR+ I+PIN+KY + L+ N ++ FEYVML NDS +DA L+ L+
Sbjct: 254 TKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLL 313
Query: 394 Q--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
Q +P K+NLI FNP S + +T E++ F I+ AG + +R +RG D MAACGQ
Sbjct: 314 QYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQ 373
Query: 452 LGNPGAIQA 460
L + Q+
Sbjct: 374 LKSAAERQS 382
>gi|336451639|ref|ZP_08622076.1| methyltransferase [Idiomarina sp. A28L]
gi|336281452|gb|EGN74732.1| methyltransferase [Idiomarina sp. A28L]
Length = 378
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 194/328 (59%), Gaps = 17/328 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEG---LNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + LNK ++ L + AE +A +K S DG
Sbjct: 30 FRADQ-VMKW-------IYHYCIDDFDNMTNLNKPLREKLKQIAEIKAPEIKVQKESIDG 81
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K L DG +E+V IP R T+CVSSQVGCA+ C FC TG+ G R+L +EI+
Sbjct: 82 TIKFAMELSDGQEVESVWIP-EADRATLCVSSQVGCALECTFCSTGQQGFNRNLKVSEII 140
Query: 250 EQAVFARRLLSSE----VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q +LL S V +TNVV MGMGEPL N++N++ A +M+ + G S R++T
Sbjct: 141 GQVWRVNKLLGSYGDTGVKPVTNVVMMGMGEPLLNMKNLVPALQLMLEDFGYGLSKRRIT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF-K 364
VSTSG+VP L Q + + ALA+SL+A +++R+ I+PIN+KY + + R + K
Sbjct: 201 VSTSGVVPALDQLREQVDVALAISLHAPNNKLRDEIVPINKKYPIAEFLAASRRYVEASK 260
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
KV EYVM+ +NDS + A L +++ P KINLI FNP GS++ +++ ++ F
Sbjct: 261 AQTKVTVEYVMIDHINDSTEHAHELAEVLKDTPSKINLIPFNPFPGSEYGRSSNSRIDRF 320
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQL 452
+L G TV +R +RGDD AACGQL
Sbjct: 321 SKVLMDYGYTVIVRKTRGDDIDAACGQL 348
>gi|205355727|ref|ZP_03222497.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346504|gb|EDZ33137.1| hypothetical protein Cj8421_1776 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 335
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 191/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 15 YANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 74
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 75 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 134
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 135 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 193
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 194 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 252
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 253 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 312
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 313 IRESKGLDISAACGQL 328
>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
Length = 388
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/355 (39%), Positives = 208/355 (58%), Gaps = 14/355 (3%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKD 164
+P K ++ L ++ +++++ + +P +A +M W Y D + DE+ +NK
Sbjct: 15 VPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNF----DEMTDINKV 70
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVG
Sbjct: 71 LRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVG 128
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHN 280
CA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N
Sbjct: 129 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLN 188
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+
Sbjct: 189 LTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDE 248
Query: 341 IMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
I+PIN+KY + + +R L N +V EYVML VND + A +L L++ PC
Sbjct: 249 IVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPC 308
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 309 KINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|118594986|ref|ZP_01552333.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
HTCC2181]
gi|118440764|gb|EAV47391.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
HTCC2181]
Length = 363
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/355 (40%), Positives = 201/355 (56%), Gaps = 18/355 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHA 173
L + EL +++ +P +A L K +Y G+ ++ TD L K F++ L +
Sbjct: 4 LLDFNLRELTEYLEKFGHKPYRAKQLLKWIYQSGEHDFSQMTD----LAKSFRQSLQTTS 59
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
E S++ S+DGTRK L + IE V IP R T+C+SSQVGCA+ C FC
Sbjct: 60 EIATPSIQLDHLSTDGTRKWLLDVGAKNGIEAVFIP-ETDRGTLCISSQVGCALECTFCS 118
Query: 234 TGRMGLKRHLTAAEIVEQAVFAR---------RLLSSEVGSITNVVFMGMGEPLHNVENV 284
TGR G R+LT+ EIV Q A RLL+ E ITNVV MGMGEPL N +V
Sbjct: 119 TGRQGFNRNLTSGEIVGQLWLANKMLREQANYRLLAHEDRIITNVVMMGMGEPLTNYNHV 178
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +M+ + S R+VT+STSGL+P + + ++ +LA+SL+A D++R+ I+PI
Sbjct: 179 VHALEMMLDDHVYGLSRRRVTLSTSGLIPAIDKLRDDCPVSLAISLHAPDDKLRDEIVPI 238
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
N+KY L L+ + V FEYVML GVNDS D AK L+ LV+ +PCK NLI
Sbjct: 239 NKKYPLQDLMAACIRYIEKAPRDFVTFEYVMLEGVNDSVDQAKALVKLVKNVPCKFNLIP 298
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
FNP S + ++ + F+ +L AG +R +RGDD AACGQL G +Q
Sbjct: 299 FNPFPNSGYLCSSRSVINAFKQVLMDAGLVATVRKTRGDDIDAACGQLA--GQVQ 351
>gi|381151853|ref|ZP_09863722.1| 23S rRNA m2A2503 methyltransferase [Methylomicrobium album BG8]
gi|380883825|gb|EIC29702.1| 23S rRNA m2A2503 methyltransferase [Methylomicrobium album BG8]
Length = 370
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 193/325 (59%), Gaps = 10/325 (3%)
Query: 131 HAFRPGQALMLWKRLYGDDIWAHCTDELEG---LNKDFKKMLSEHAEFRALSLKDILTSS 187
H +P +A L K +Y + + D+ E L+K + L+ H A + +S
Sbjct: 30 HGEKPFRATQLLKWIYQEGV-----DDFEAMTNLSKPLRAWLTAHCRIEAPEIVLEQQAS 84
Query: 188 DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
DGT K + G +ETV IP R T+CVSSQ+GCA+ C FC T + G R+L +E
Sbjct: 85 DGTCKWVLETHCGNRVETVFIP-EESRGTLCVSSQIGCALACSFCSTAQQGFNRNLATSE 143
Query: 248 IVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
I+ Q + A++ L SE ITNVV MGMGEPL N +NV+ A N+M+ + S R+VT+S
Sbjct: 144 IIGQVLAAQKRLGSE-RKITNVVMMGMGEPLLNFDNVVAAMNLMMDDFAFGLSKRRVTLS 202
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY 367
TSG+VP + + + +LAVSL+A DE+R+ ++PIN+KY L L+E R+
Sbjct: 203 TSGVVPAMYRLTEVCDVSLAVSLHAVRDELRDQLVPINKKYPLSELMEACRDNAKLAPRR 262
Query: 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNI 427
+ FEYVML G+NDS +DAK LI L+ +P K+NLI FNP S + +++ ++ F+ +
Sbjct: 263 TITFEYVMLDGINDSPEDAKGLIELLSTVPSKLNLIPFNPFPNSPYRCSSNNRINLFKTM 322
Query: 428 LAGAGCTVFLRLSRGDDQMAACGQL 452
L AG +R +RGDD AACGQL
Sbjct: 323 LNEAGIVTTVRKTRGDDIDAACGQL 347
>gi|148926804|ref|ZP_01810483.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|419646717|ref|ZP_14178178.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 53161]
gi|419660634|ref|ZP_14191078.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|419666918|ref|ZP_14196906.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|419679604|ref|ZP_14208589.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 87459]
gi|145844529|gb|EDK21636.1| hypothetical protein Cj8486_1762 [Campylobacter jejuni subsp.
jejuni CG8486]
gi|380623195|gb|EIB41912.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 53161]
gi|380635918|gb|EIB53671.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-979]
gi|380646953|gb|EIB63889.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-10]
gi|380656846|gb|EIB72979.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 87459]
Length = 356
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 191/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|422628419|ref|ZP_16693628.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330936987|gb|EGH41085.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 382
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALSEKLKAC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++P+N+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|205829853|sp|Q15R53.2|RLMN_PSEA6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 376
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 207/352 (58%), Gaps = 9/352 (2%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFK 166
+ K +++ L + L+++ S +P +A + K +Y + D++ LNK +
Sbjct: 1 MSAKPTKINLLNFNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDF--DQMTNLNKALR 58
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
+ L E +A + +SDGT K L+ G +ETV IP + R T+CVSSQVGCA
Sbjct: 59 EKLKAQCEVKAPEIAYQQGASDGTIKFALRLEGGQEVETVWIP-DEDRATLCVSSQVGCA 117
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQA--VFARRLLSSEVGS--ITNVVFMGMGEPLHNVE 282
+ C FC T + G R+L+ +EI+ Q V LS++ ITNVV MGMGEPL N++
Sbjct: 118 LECTFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNLK 177
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A ++M+ + S R+VT+STSG+VP L ++ + ALA+SL+A D++R+ I+
Sbjct: 178 NVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIV 237
Query: 343 PINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY + + +R L N KV EYVML G+NDS D A L ++ PCKI
Sbjct: 238 PINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLADTPCKI 297
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP+ GS ++ +++ ++ F +L+ G V +R +RGDD AACGQL
Sbjct: 298 NLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQL 349
>gi|374328475|ref|YP_005078659.1| hypothetical protein PSE_0125 [Pseudovibrio sp. FO-BEG1]
gi|359341263|gb|AEV34637.1| hypothetical protein PSE_0125 [Pseudovibrio sp. FO-BEG1]
Length = 420
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 188/320 (58%), Gaps = 32/320 (10%)
Query: 164 DFKKMLSEHAEFRA-------LSLKDILT---SSDGTRKILFML-----DDGLVIETVVI 208
DF KM + + R ++ +I+T S DGTRK LF + +ETV I
Sbjct: 78 DFSKMSNVSKDLRTKLDFAFTIARPEIVTEQISVDGTRKWLFRFPSRGAGKPVEVETVYI 137
Query: 209 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------- 259
P R T+C+SSQVGC + C FC+TG + R+LTA EI+ Q + A+ L
Sbjct: 138 P-EEDRGTLCISSQVGCTLTCTFCHTGTQKMVRNLTAEEILAQLMLAKDRLNDFPDADAP 196
Query: 260 -------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
+S ITN+V MGMGEPL+N ENV KA I GL S R++T+STSG+
Sbjct: 197 EGGLDASTSNRRRITNIVMMGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVT 256
Query: 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372
P++ + +E C LA+SL+A DE+RN ++PIN+KY L L++ R+ N ++ FE
Sbjct: 257 PEIARTGDEIGCMLAISLHAVNDELRNVLVPINKKYNLETLLQACRDYPGLSNAKRITFE 316
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
YVML GVNDS +DAK+L+ L++GIP KINL+ FNP GS + + E++ EF +++ AG
Sbjct: 317 YVMLKGVNDSLEDAKKLVQLLKGIPAKINLLPFNPWPGSPYECSDWEQIEEFADVVNRAG 376
Query: 433 CTVFLRLSRGDDQMAACGQL 452
+R RG D AACGQL
Sbjct: 377 YASPIRTPRGRDIFAACGQL 396
>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
pealeana ATCC 700345]
gi|205829883|sp|A8H242.1|RLMN_SHEPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
Length = 373
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/372 (40%), Positives = 210/372 (56%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +K R L FTE+ + FR Q LM W +G +E+ +N
Sbjct: 7 NLLDLDRKALRAL-----FTEMGE----KPFRADQ-LMKWIYHFG----VSDFEEMTNIN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L+ E A + S DGT K + DG +ETV IP + R T+CVSSQ
Sbjct: 53 KVLRAKLAAKCEIVAPEISSYQKSVDGTIKFAINVGDGQEVETVYIPED-DRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPL 278
VGCA+ C FC T + G R+LT AEIV Q A F + + ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTAQQGFNRNLTVAEIVGQIWRVADFIGFVKDTGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N++NVI A +IM+ + G S R+VT+STSG+VP L + + + ALAVS++A DE+R
Sbjct: 172 LNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++P+N+KY L + +R + N +V EYVML +NDS D A L L++
Sbjct: 232 DVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCK+NLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum So ce56]
gi|205829655|sp|A9FFJ6.1|RLMN_SORC5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum So ce56]
Length = 389
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 196/370 (52%), Gaps = 50/370 (13%)
Query: 125 QQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE-GLNKDFKKMLSEHAEFRALSLKDI 183
++W S A R G+ K+++ W H L+ + L EH A L ++
Sbjct: 14 EEWSASLAAR-GERSFTAKQVFQ---WIHRRGVLDPAAMTNLPARLREH--LAAEGLGEV 67
Query: 184 LT------SSDGTRKILFMLDDGLVIETVVIPCNRG------------------------ 213
LT S DGTRK+L L DG IETV++P G
Sbjct: 68 LTPERVHRSEDGTRKLLLRLRDGATIETVLLPSVSGPGSQAQLDADAAAALDDDEDDDAA 127
Query: 214 ---------RTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG 264
R T C+S+QVGCAM C FC +G GLKRHL A EI Q + R +L E
Sbjct: 128 AEAGAAPRVRVTQCISTQVGCAMGCGFCASGVAGLKRHLGAEEIAGQVLLGRAMLE-EGE 186
Query: 265 SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE--S 322
+ NVV+MGMGEPLHN E ++ ++ H +G++ S R+VTVSTSGLVP++ + +
Sbjct: 187 ELRNVVYMGMGEPLHNYEATARSLRLLTHPEGINLSTRRVTVSTSGLVPEIARLGADFGG 246
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 382
ALA+SL+A DE R+ +MPINRK+ L L+ LR ++ EY ++AG ND
Sbjct: 247 QIALAISLHAADDETRSALMPINRKHPLDELLAALRA-YPLPRRRRITIEYTLVAGQNDD 305
Query: 383 FDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
+A+RL L++G+P KINLI NP S P E++ F+ +L AG + F+R RG
Sbjct: 306 PAEARRLAKLLRGLPVKINLIPMNPIEASSLGPPAQERVAAFQEVLTQAGYSCFVRRRRG 365
Query: 443 DDQMAACGQL 452
DD AACGQL
Sbjct: 366 DDVSAACGQL 375
>gi|254472235|ref|ZP_05085635.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062]
gi|211958518|gb|EEA93718.1| radical SAM enzyme, Cfr family [Pseudovibrio sp. JE062]
Length = 420
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 188/320 (58%), Gaps = 32/320 (10%)
Query: 164 DFKKMLSEHAEFRA-------LSLKDILT---SSDGTRKILFML-----DDGLVIETVVI 208
DF KM + + R ++ +I+T S DGTRK LF + +ETV I
Sbjct: 78 DFSKMSNVSKDLRTKLDFAFTIARPEIVTEQISVDGTRKWLFRFPSRGAGKPVEVETVYI 137
Query: 209 PCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL--------- 259
P R T+C+SSQVGC + C FC+TG + R+LTA EI+ Q + A+ L
Sbjct: 138 P-EEDRGTLCISSQVGCTLTCTFCHTGTQKMVRNLTAEEILAQLMLAKDRLNDFPDADAP 196
Query: 260 -------SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
+S ITN+V MGMGEPL+N ENV KA I GL S R++T+STSG+
Sbjct: 197 EGGLDASTSNRRRITNIVMMGMGEPLYNFENVKKALLIASDGDGLSLSKRRITLSTSGVT 256
Query: 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372
P++ + +E C LA+SL+A DE+RN ++PIN+KY L L++ R+ N ++ FE
Sbjct: 257 PEIARTGDEIGCMLAISLHAVNDELRNVLVPINKKYNLETLLQACRDYPGLSNAKRITFE 316
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
YVML GVNDS +DAK+L+ L++GIP KINL+ FNP GS + + E++ EF +++ AG
Sbjct: 317 YVMLKGVNDSLEDAKKLVQLLKGIPAKINLLPFNPWPGSPYECSDWEQIEEFADVVNRAG 376
Query: 433 CTVFLRLSRGDDQMAACGQL 452
+R RG D AACGQL
Sbjct: 377 YASPIRTPRGRDIFAACGQL 396
>gi|419648859|ref|ZP_14180177.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9217]
gi|380625820|gb|EIB44362.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9217]
Length = 356
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 191/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L+KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLSKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|419633586|ref|ZP_14166018.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23269]
gi|380611834|gb|EIB31376.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23269]
Length = 356
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPC 210
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 211 NR------------GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISYARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|421464220|ref|ZP_15912910.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|400204973|gb|EJO35954.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
Length = 411
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 207/360 (57%), Gaps = 27/360 (7%)
Query: 113 RVLLKGMSFTELQQWVR---SHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKK 167
+V L GMS EL+ + FR GQ +M W Y TD E+ ++ +
Sbjct: 30 KVNLLGMSRAELENFFEKLGEKKFRAGQ-VMKWMHQY------FVTDFAEMTNISGKLRA 82
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRG---RTTVCVSSQ 222
L + E +A + S DGTRK +F + DG ++ETV+IP R T+C+SSQ
Sbjct: 83 KLEQLCEIKAPEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGLRKTLCISSQ 142
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMGMGE 276
VGCA++C FC TG+ G +R LT EI+ Q A + +V S+TNVV MGMGE
Sbjct: 143 VGCALDCSFCSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPVAERTRSVTNVVMMGMGE 202
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N + V+ + IM+ + S R+VT+STSG+VP++ Q + + ALA+SL+A DE
Sbjct: 203 PLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDE 262
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNN----YKVLFEYVMLAGVNDSFDDAKRLIGL 392
+RN ++PIN+KY L LI + ++ N V EYVML GVNDS + A+++I L
Sbjct: 263 LRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQMIRL 322
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ +P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD AACGQL
Sbjct: 323 LKNLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|389686009|ref|ZP_10177332.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas chlororaphis O6]
gi|399009190|ref|ZP_10711632.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM17]
gi|425901324|ref|ZP_18877915.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|388550351|gb|EIM13621.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas chlororaphis O6]
gi|397883376|gb|EJK99862.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398113467|gb|EJM03314.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM17]
Length = 382
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEIRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVISAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIALLKDIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|389808181|ref|ZP_10204591.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter thiooxydans
LCS2]
gi|388443059|gb|EIL99218.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter thiooxydans
LCS2]
Length = 376
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 194/326 (59%), Gaps = 11/326 (3%)
Query: 134 RPGQALMLWKRLYGD--DIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+P +A + K +Y D D + + TD + K + L+E A ++DGT
Sbjct: 31 KPYRAEQVMKWIYHDLEDNFENMTD----VGKALRAKLTEACYIGAPKTLLDKVATDGTH 86
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L +D G IETV IP R T+CVSSQ+GCA+NCQFC TG G R+L+ AEI+ Q
Sbjct: 87 KWLLGMDSGNAIETVYIP-EPTRGTLCVSSQIGCALNCQFCSTGAQGFNRNLSTAEIIGQ 145
Query: 252 AVFARRLL---SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A + L + + ITNVV MGMGEPL N +NV+KA +M + G + ++VT+ST
Sbjct: 146 VWVAAKYLGNVTHQNRRITNVVMMGMGEPLANFDNVLKAMKLMRDDLGFGLAAKRVTLST 205
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368
+GLVP + Q + + +LAVSL+A DE+R +MPIN++Y L L+ + + K
Sbjct: 206 AGLVPLIDQLSDAIDVSLAVSLHAANDELRTELMPINKRYPLAELLAACQRWIARKPRTS 265
Query: 369 VLFEYVMLAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQFTPTTDEKMIEFRNI 427
+ FEY ++ GVND + A++LI L++ +P CK+NLI FNP G+QF + E + +F+
Sbjct: 266 ITFEYTLMQGVNDQPEHARQLIKLMRKLPTCKVNLIPFNPFPGTQFKRSAPEDIHQFQTQ 325
Query: 428 LAGAGCTVFLRLSRGDDQMAACGQLG 453
L AG LR +RGDD AACGQL
Sbjct: 326 LLNAGVLTMLRRTRGDDIDAACGQLA 351
>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|416157002|ref|ZP_11604848.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|416225542|ref|ZP_11626890.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|416231838|ref|ZP_11628904.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|416235984|ref|ZP_11630379.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|416242273|ref|ZP_11633309.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|416246881|ref|ZP_11635250.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|416249828|ref|ZP_11636925.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|416255365|ref|ZP_11639202.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|421780199|ref|ZP_16216689.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis BBH18]
gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|407812993|gb|EKF83777.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
Length = 395
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 212/362 (58%), Gaps = 25/362 (6%)
Query: 109 KKGSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNK 163
+ +V L GMS EL + S +FR Q +M W +G TD E+ ++K
Sbjct: 15 QAAKKVNLLGMSKDELSAFFVSLGEKSFRATQ-VMKWIYQFG------VTDFFEMTNISK 67
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG----RTTVCV 219
+ L E A ++K S DGTRK +F + G ++ETV+IP + G R T+C+
Sbjct: 68 KLQHKLHEVACVVPPTVKYKEFSQDGTRKWVFEVAGGSLVETVLIPADDGKQFGRKTLCI 127
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMG 273
SSQVGCA++C FC TG+ G +R LT +EI+ Q A + V +TNVV MG
Sbjct: 128 SSQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTERENRVTNVVMMG 187
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N + V+ + ++M+ + S R+VT+STSG+VP++ + + ALA+SL+A
Sbjct: 188 MGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAP 247
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKN---NYKVLFEYVMLAGVNDSFDDAKRLI 390
DE+RN ++PIN+KY L LI+ + ++ +N + EYVMLAGVNDS + A +L+
Sbjct: 248 NDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLV 307
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++ +P KINLI FNP + + +++ ++ F +IL AG +R +RGDD AACG
Sbjct: 308 DLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGDDIDAACG 367
Query: 451 QL 452
QL
Sbjct: 368 QL 369
>gi|205829717|sp|A4VNX4.2|RLMN_PSEU5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 382
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 203/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G++ +L+ + S FR GQ +M W +G D + D + L K ++ L
Sbjct: 7 KVNLLGLTQPQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNLGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEIVSEDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWIANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S RKVT+STSG+VP + + + +LA+SL+A + +R+ ++PIN
Sbjct: 181 AAMQIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNEALRDQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L GVND + A+++I L+ IPCKINLI
Sbjct: 241 KKYPLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLADIPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F++IL G V +R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQL 348
>gi|16124389|ref|NP_418953.1| hypothetical protein CC_0134 [Caulobacter crescentus CB15]
gi|221233072|ref|YP_002515508.1| radical SAM family enzyme [Caulobacter crescentus NA1000]
gi|81621310|sp|Q9ABT6.1|RLMN_CAUCR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807161|sp|B8GXM4.1|RLMN_CAUCN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|13421243|gb|AAK22121.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962244|gb|ACL93600.1| radical SAM family enzyme [Caulobacter crescentus NA1000]
Length = 404
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 204/349 (58%), Gaps = 16/349 (4%)
Query: 116 LKGMSFTEL-QQWVRSHAFRPGQALMLWKRLYGDDIWAH---CTD--ELEGLNKDFKKML 169
L G++ +L V S G+A M +++ W H TD ++ + K+ + L
Sbjct: 27 LSGLTRPQLVAALVESGVVEHGKAKMRATQIFR---WMHHRGVTDFADMSDVAKETRARL 83
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+E + + S DGTRK L + G+ +E+V IP +CVSSQVGC +NC
Sbjct: 84 AEAFTIARPEIVERQVSKDGTRKWLIRMAPGIEVESVYIPGVGRAGALCVSSQVGCTLNC 143
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGEPLHNVENV 284
FC+TG L R+LTAAEIV Q A+ L+ E ++N+VFMGMGEPL+N+ V
Sbjct: 144 SFCHTGTQPLVRNLTAAEIVAQVQVAKDDLAEWPSDKEDRQLSNIVFMGMGEPLYNLGQV 203
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
A I+ +G+ S R++TVSTSG+VP L++ + + LA+SL+AT D +R+ ++P+
Sbjct: 204 ADAIEIISDNEGIAISRRRITVSTSGVVPMLEKLGSTTQAMLAISLHATNDPLRDVLVPL 263
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
N+KY + L+ +R N +V FEYVML GVNDS ++A+ L+ L++GIP KINLI
Sbjct: 264 NKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPEEARALVKLIKGIPAKINLIP 323
Query: 405 FNPHCGSQFTPTTDEKMIE-FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP GS + +D IE F IL AG + +R RG D +AACGQL
Sbjct: 324 FNPWPGSDYQ-CSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQL 371
>gi|384411217|ref|YP_005620582.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|335931591|gb|AEH62131.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 391
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 208/366 (56%), Gaps = 20/366 (5%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKD 164
+K R+ L G+S +++ ++S QA + LW +Y A D + + K
Sbjct: 23 RKDGRIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRG--AVAFDGMTDIAKT 80
Query: 165 FKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
+ L+EH A+S +++T S+DGTRK L DDG E V IP + R T+C+SS
Sbjct: 81 MRPWLAEHF---AISRPEVVTMQISTDGTRKWLLKTDDGYDYEMVFIP-DADRGTLCISS 136
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMGE 276
Q+GC +NC+FC TG M L R+LT EIV Q + AR L E +TNVV MGMGE
Sbjct: 137 QIGCTLNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPEGRLLTNVVMMGMGE 196
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL+N +NV A +++ G+ S R++T+STSG+VP + + E LAVSL+A T
Sbjct: 197 PLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAVTKA 256
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ-- 394
VR+ I+PIN+KY + L+ N ++ FEYVML NDS +DA L+ L+Q
Sbjct: 257 VRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLLQYY 316
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
+P K+NLI FNP S + +T E++ F I+ AG + +R +RG D MAACGQL +
Sbjct: 317 RLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQLKS 376
Query: 455 PGAIQA 460
Q+
Sbjct: 377 AAERQS 382
>gi|91792611|ref|YP_562262.1| ribosomal RNA large subunit methyltransferase N [Shewanella
denitrificans OS217]
gi|123356968|sp|Q12PT7.1|RLMN_SHEDO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91714613|gb|ABE54539.1| conserved hypothetical protein [Shewanella denitrificans OS217]
Length = 373
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 213/372 (57%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +KG R L FTE+ + FR Q LM W +G + +E+ +N
Sbjct: 7 NLLDLDRKGLRAL-----FTEMGE----KPFRADQ-LMKWIYHFGVSDF----EEMTNIN 52
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L+E A + S+DGT K + G +ETV IP + R T+CVSSQ
Sbjct: 53 KVLRSKLAERCVIVAPEIASFQKSADGTIKFAINVGQGQEVETVYIPED-DRATLCVSSQ 111
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPL 278
VGCA+ C FC TG+ G R+LT +EIV Q A F + ++ ITNVV MGMGEPL
Sbjct: 112 VGCALECTFCSTGQQGFNRNLTVSEIVGQIWRVAQFLGFVKTTGERPITNVVMMGMGEPL 171
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N++NVI A +IM+ + G S R+VT+STSG+VP L + + ALAVS++A DE+R
Sbjct: 172 LNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIHAPNDELR 231
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++P+N+KY L + +R + N +V EYVML +NDS + A L L++
Sbjct: 232 DILVPVNKKYPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMKDT 291
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCK+NLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 292 PCKVNLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLA--G 349
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 350 DIRDRTKRLAKK 361
>gi|381403680|ref|ZP_09928364.1| ribosomal RNA large subunit methyltransferase N [Pantoea sp. Sc1]
gi|380736879|gb|EIB97942.1| ribosomal RNA large subunit methyltransferase N [Pantoea sp. Sc1]
Length = 389
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 211/359 (58%), Gaps = 20/359 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---G 160
V+ K ++ L ++ +++++ +S +P +A +M W I+ +C D+ E
Sbjct: 15 VVSPKSQKINLLDLNRQQMREFFQSLGEKPFRADQVMKW-------IYHYCCDDFEQMTD 67
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK + L E E RA + + + S+DGT K + D LV ETV IP R T+CVS
Sbjct: 68 INKKLRNRLMELTEIRAPEVAEEMRSTDGTIKWAIRVGDQLV-ETVYIP-EGDRATLCVS 125
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGE
Sbjct: 126 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGE 185
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D+
Sbjct: 186 PLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDK 245
Query: 337 VRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ I+PIN+KY + + ++ + N +V EYV+L VNDS DDA L L++
Sbjct: 246 LRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLK 305
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 ETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLA 364
>gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9]
gi|254807186|sp|C1DD41.1|RLMN_LARHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 366
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/330 (43%), Positives = 190/330 (57%), Gaps = 11/330 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W G + + TD L K + L + A SL SSDGTRK
Sbjct: 25 FRAKQ-VMRWMHQMGQNDFDAMTD----LAKSLRAKLHDTATVTVPSLMLEQASSDGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP + R T+CVSSQVGCA+ C FC TGR G R+L+ AEI+ Q
Sbjct: 80 WLLDVGTGNRVETVFIPED-DRGTLCVSSQVGCALECTFCSTGRQGFNRNLSTAEIIGQL 138
Query: 253 VFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
+A + + + I+NVV MGMGEPL N +NV+ A IM+ + G S R+VT+STS
Sbjct: 139 WWANKSMGVTPKNERVISNVVMMGMGEPLANYDNVVAAMRIMLDDHGYGLSRRRVTLSTS 198
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
GLVP + + + ALAVSL+A D +R+ I+PIN+KY L L+ L V
Sbjct: 199 GLVPAMDRLREDCPVALAVSLHAPNDRIRDEIVPINKKYPLRELLAACERYLEKAPRDFV 258
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML +ND + A+ L+ LV+ +PCK NLI FNP S + ++ + FR+ILA
Sbjct: 259 TFEYVMLDQINDRPEHARELVALVRDVPCKFNLIPFNPFPNSGYGRASNNAVRAFRDILA 318
Query: 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
AG +R +RG+D AACGQL G +Q
Sbjct: 319 EAGYITTVRKTRGEDIDAACGQLA--GQVQ 346
>gi|451941328|ref|YP_007461965.1| hypothetical protein BVwin_00190 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900715|gb|AGF75177.1| hypothetical protein BVwin_00190 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 409
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 203/370 (54%), Gaps = 26/370 (7%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
V+ + +++ L G+S E+ +++ Q M LW LY + DE+ +
Sbjct: 21 VIVEGSAKLSLIGLSQDEMMHTLKTIGVPERQTRMRVRQLWHWLYVRGV--SNFDEMLNI 78
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG-----LVIETVVIPCNRGRTT 216
+K ++M H + S DGTRK L + IETV IP GR T
Sbjct: 79 SKSMREMFKSHFSIARPEIVGEQISKDGTRKWLLRFPARGAGRLVEIETVYIP-EEGRGT 137
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--------------E 262
+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L E
Sbjct: 138 LCLSSQVGCTLTCSFCHTGTQVLVRNLTAEEILAQLLVARDRLGDFPDKNTPDRAIVPVE 197
Query: 263 VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES 322
ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP + + E
Sbjct: 198 GRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGEEI 257
Query: 323 NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDS 382
LA+SL+A D +R+ ++PIN+KY L LL++ R N ++ FEYVML +NDS
Sbjct: 258 GVMLAISLHAVHDTLRDMLVPINKKYPLALLMDACRHYPGLSNAKRITFEYVMLKDINDS 317
Query: 383 FDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRG 442
DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ RG
Sbjct: 318 LDDAKRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNRAGYASPIRIPRG 377
Query: 443 DDQMAACGQL 452
D +AACGQL
Sbjct: 378 RDILAACGQL 387
>gi|421595506|ref|ZP_16039531.1| hypothetical protein BCCGELA001_00732 [Bradyrhizobium sp.
CCGE-LA001]
gi|404272382|gb|EJZ36037.1| hypothetical protein BCCGELA001_00732 [Bradyrhizobium sp.
CCGE-LA001]
Length = 400
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 207/363 (57%), Gaps = 22/363 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
V P K S L G+S TEL + P Q M LW LY A D++ +
Sbjct: 22 VPPAKPS---LIGLSRTELADRLGDIGVAPAQRKMRVQQLWHWLYFRG--AQSFDDMTSI 76
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRT 215
+K + L++H + S+DGTRK L L G +E V IP R
Sbjct: 77 SKGIRAELAQHFTVDRPEVVAEQISNDGTRKWLLRLPSGDSVQKAHEVECVYIP-ETDRG 135
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGS--ITNV 269
T+CVSSQVGC +NC FC+TG L R+LTA EIV Q + AR L+ E G+ +TN+
Sbjct: 136 TLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADREDGTRRVTNI 195
Query: 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVS 329
V MGMGEPL+N + V A I+ +G+ S R++T+STSG+VP + + E LA+S
Sbjct: 196 VMMGMGEPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAIS 255
Query: 330 LNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRL 389
L+A DE+RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDAK L
Sbjct: 256 LHAVRDELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLL 315
Query: 390 IGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAAC 449
+ +++GIP KINLI FNP G+ + + +++ +F + AG + +R RG D +AAC
Sbjct: 316 VKMLKGIPAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAAC 375
Query: 450 GQL 452
GQL
Sbjct: 376 GQL 378
>gi|408376357|ref|ZP_11173962.1| hypothetical protein QWE_02160 [Agrobacterium albertimagni AOL15]
gi|407749824|gb|EKF61335.1| hypothetical protein QWE_02160 [Agrobacterium albertimagni AOL15]
Length = 412
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 188/331 (56%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
+W LY I D + ++KD ++ML H + + S+DGTRK L
Sbjct: 57 IWNWLYVRGISDF--DHMANVSKDMREMLKTHFTIARPEIVEEQVSNDGTRKWLLRFPPR 114
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ +E+V IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + A
Sbjct: 115 GAGRPVEVESVYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLLA 173
Query: 256 RR--------------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R ++ S ITNVV MGMGEPL+N E V KA I GL S
Sbjct: 174 RDRLGDFPDREIPVGTMMPSSDRKITNVVMMGMGEPLYNFEEVKKALLIATDGDGLSLSK 233
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R+VT+STSG+VP++ + E LA+SL+A DE+R+ ++PIN+KY L L+E R
Sbjct: 234 RRVTLSTSGVVPEIYRTGEEIGVMLAISLHAVRDELRDMLVPINKKYPLKELVEACRNYP 293
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML VNDS DDAK LI L++G+P KINLI FNP G+ + + ++
Sbjct: 294 GLSNARRITFEYVMLKDVNDSLDDAKGLIQLLKGVPAKINLIPFNPWPGTNYQCSDWAQI 353
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + + AG +R RG D +AACGQL
Sbjct: 354 EKFADFINQAGYASPIRTPRGRDILAACGQL 384
>gi|401764742|ref|YP_006579749.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
gi|400176276|gb|AFP71125.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
Length = 388
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 207/358 (57%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + DE+ +
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKDMGEKPFRADQVMKWMYHYCSDNF----DEMTDI 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + S+DGT K + D V ETV IP R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSADGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 246 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|419629559|ref|ZP_14162281.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 60004]
gi|380607913|gb|EIB27759.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 60004]
Length = 356
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 191/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLKVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|375109391|ref|ZP_09755639.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
gi|374570481|gb|EHR41616.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
Length = 375
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 207/349 (59%), Gaps = 18/349 (5%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
V L ++ +++Q++ S +P +A +M W I+ +C D+ + +NK +++
Sbjct: 8 VNLLDLTRSQMQEFFVSLGEKPFRADQVMKW-------IYHYCVDDFDKMTNINKKLREL 60
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L +A + S+DGT K + L+ G +ETV IP + R T+CVSSQVGCA++
Sbjct: 61 LKARCVIKAPVVATRQDSADGTIKFVMALEGGQEVETVWIP-EKDRRTLCVSSQVGCALD 119
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENV 284
C FC T + G R+L+ +EI+ Q +++ S + G +TNVV MGMGEPL N+ NV
Sbjct: 120 CSFCSTAQQGFNRNLSVSEIIGQVWRVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNV 179
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +M+ + G S R+VT+STSG+VP L + + ALA+SL+A + +R+ ++P+
Sbjct: 180 VPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPV 239
Query: 345 NRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
N+KY + + R + H K N KV EYVML G+NDS D A L ++ P KINLI
Sbjct: 240 NKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKDTPSKINLI 299
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 300 PFNPYPGSPYKRSSNSRIDRFNKVLQDYGFTVMVRKTRGDDIDAACGQL 348
>gi|359300528|ref|ZP_09186367.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
[parainfluenzae] CCUG 13788]
gi|402304723|ref|ZP_10823787.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sputorum HK 2154]
gi|400377130|gb|EJP30010.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sputorum HK 2154]
Length = 389
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 212/359 (59%), Gaps = 14/359 (3%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEG 160
+ +V P K ++ L ++ E+++ +P +A LM W +G+D + D +
Sbjct: 12 DASVQPAKAEKINLMNLTRQEMRELFAQMGEKPFRADQLMKWIYHFGEDNF----DNMSN 67
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK ++ L + AE +A + S+DGT K + D IETV IP R T+CVS
Sbjct: 68 INKVLREKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGDQQ-IETVYIP-EADRATLCVS 125
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGE 276
SQVGCA+ C FC T + G R+LT +EI+ Q A +++ + V ITNVV MGMGE
Sbjct: 126 SQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGE 185
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NVI A IM+ + S R+VT+STSG+VP L + + ALA+SL+A DE
Sbjct: 186 PLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMMREKIDVALAISLHAPNDE 245
Query: 337 VRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ IMPIN+KY + +L++++ + E+ N+ KV EYV+L VND + A +L +++
Sbjct: 246 LRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLK 305
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 306 NTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLA 364
>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
gi|123753570|sp|Q2SDW1.1|RLMN_HAHCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
Length = 378
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 207/346 (59%), Gaps = 8/346 (2%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
+++ L GM+ ++L+ + S + +A L K +Y + D + ++K ++ L E
Sbjct: 6 AKINLLGMNRSDLETFFESLGEKKFRATQLMKWMY--HLGVSDFDLMTNMSKALREKLKE 63
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
AE + S+DGTRK + L G IETV IP N GR T+CVSSQ+GC+++C F
Sbjct: 64 VAEVSVPEVIYEDISADGTRKWVMRLAGGNSIETVYIPDN-GRGTLCVSSQIGCSLDCSF 122
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKA 287
C TG+ G R+L++AEI+ Q A R S+ +TN+VFMGMGEPL N +NV++A
Sbjct: 123 CSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKERYVTNIVFMGMGEPLLNFDNVVRA 182
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
++M+ + G S R++TVSTSGLVP L + + ++ +LA+SL+A + +R+ ++P+N+K
Sbjct: 183 CDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDVTDVSLAISLHAPNNSLRDVLVPVNKK 242
Query: 348 YKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
Y + L+ L + ++ EY ++AGVNDS A L L++ +PCKINLI FN
Sbjct: 243 YPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRDLLRDLPCKINLIPFN 302
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P S + + + F+ +L+ AG +R +RGDD AACGQL
Sbjct: 303 PFPNSGYERPSRNATLRFQKVLSDAGYVATVRTTRGDDIDAACGQL 348
>gi|254877000|ref|ZP_05249710.1| radical SAM family protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843021|gb|EET21435.1| radical SAM family protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 370
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 187/314 (59%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E+AE + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDSMTDLGKNLRNKLRENAEIVIPKVVFNKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQVGC +NC FC TG+ G R+L++AE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
S+TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFSVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A TD +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHAPTDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA++L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEQLVELLRSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|395782182|ref|ZP_10462586.1| ribosomal RNA large subunit methyltransferase N [Bartonella
rattimassiliensis 15908]
gi|395419121|gb|EJF85422.1| ribosomal RNA large subunit methyltransferase N [Bartonella
rattimassiliensis 15908]
Length = 408
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/371 (39%), Positives = 204/371 (54%), Gaps = 26/371 (7%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEG 160
NV+ K S++ L G+S E+ Q +++ Q M LW LY I DE+
Sbjct: 20 NVVVKDDSKLSLIGLSQDEMVQALKTIGVPERQTRMRARQLWHWLYVRGISNF--DEMLN 77
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRT 215
+++ ++ L + + S DGTRK L + IETV IP GR
Sbjct: 78 ISRAMQETLKCYFSIARPEIVGEQISKDGTRKWLLRFPARGAGKPVEIETVYIP-EEGRG 136
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-------------- 261
T+C+SSQVGC + C FC+TG L R+LT EI+ Q + AR L
Sbjct: 137 TLCLSSQVGCTLTCSFCHTGTQMLVRNLTVEEILAQLLVARDCLGDFPDKNTPDGAIVPI 196
Query: 262 EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
E ITN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP + + E
Sbjct: 197 EGRKITNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPGIIRTGKE 256
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
LA+SL+A D +R+ ++PIN+KY L LL++ R N ++ FEYVML +ND
Sbjct: 257 IGVMLAISLHAVHDTLRDMLVPINKKYPLALLMDACRNYPGLSNARRITFEYVMLKDIND 316
Query: 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSR 441
S DDAKRLI L++GIP KINLI FNP GS + + E++ F +++ AG +R+ R
Sbjct: 317 SLDDAKRLIQLLKGIPAKINLIPFNPWPGSNYQCSDWEQIERFADVVNQAGYASPIRIPR 376
Query: 442 GDDQMAACGQL 452
G D +AACGQL
Sbjct: 377 GRDILAACGQL 387
>gi|188533171|ref|YP_001906968.1| ribosomal RNA large subunit methyltransferase N [Erwinia
tasmaniensis Et1/99]
gi|254807181|sp|B2VE98.1|RLMN_ERWT9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99]
Length = 389
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 211/357 (59%), Gaps = 17/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLN 162
V+PKK ++ L ++ +++++ +P +A + K +Y DD DE+ +N
Sbjct: 16 VIPKK-EKINLLDLNRQQMREFFAGLGEKPFRADQVMKWIYHYCCDDF-----DEMTDIN 69
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K F+ L E AE RA + + SSDGT K + G +ETV IP + R T+CVSSQ
Sbjct: 70 KVFRNRLKELAEIRAPEVAEEQRSSDGTIKWAIQVG-GQQVETVYIP-EKDRATLCVSSQ 127
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + +G ITNVV MGMGEPL
Sbjct: 128 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGATKVIGQRPITNVVMMGMGEPL 187
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 188 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIR 247
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + ++ + N +V EYVML +NDS D+A L L++
Sbjct: 248 DEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHELAALLKET 307
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 364
>gi|114327110|ref|YP_744267.1| radical SAM protein [Granulibacter bethesdensis CGDNIH1]
gi|122327908|sp|Q0BV08.1|RLMN_GRABC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114315284|gb|ABI61344.1| radical SAM family enzyme [Granulibacter bethesdensis CGDNIH1]
Length = 397
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 201/349 (57%), Gaps = 18/349 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTD--ELEGLNKDFKKMLSE 171
L G+S +L + + F +A LW +Y G+ TD + + K ++ L+E
Sbjct: 44 LVGLSREQLTEALAEIGFPAFRAKQLWHWIYHRGE------TDFRVMSSIAKPQQETLAE 97
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCN-RGRTTVCVSSQVGCAMNCQ 230
++ + LTS D TRK LF DG ETV IP R VC+SSQVGC ++C+
Sbjct: 98 RFVISRPAVTECLTSVDETRKWLFRFRDGQEAETVYIPDPVEDRGAVCISSQVGCTLSCR 157
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARRLLS---SEVGS----ITNVVFMGMGEPLHNVEN 283
FC+TG L R+L AEIV Q + AR S G ++ +V MGMGEPL+N EN
Sbjct: 158 FCHTGTQPLVRNLGPAEIVGQFMAARDAYGEWPSPKGETPRLLSTIVLMGMGEPLYNYEN 217
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V +A I++ G+ S R++T+STSG+VP + + E LA+SL+A TDE+R+ ++P
Sbjct: 218 VKQAMRIVMDGDGIALSRRRITLSTSGVVPMMDRCGTELAVNLAISLHAVTDELRDELVP 277
Query: 344 INRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
+NRKY + LI R N ++ FEY+ML G+NDS +A+ L+ L+ GIP K+NLI
Sbjct: 278 LNRKYPIRELIAACRRYPAASNARRITFEYIMLDGINDSEAEARELVRLIAGIPAKVNLI 337
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP GSQ+TP+ + + F I+ AG +R RG D +AACGQL
Sbjct: 338 PFNPWPGSQYTPSRPKALERFSRIVMEAGFASPIRTPRGRDILAACGQL 386
>gi|419693358|ref|ZP_14221349.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9872]
gi|380672777|gb|EIB87925.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9872]
Length = 356
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 191/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|416218218|ref|ZP_11624766.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|416237493|ref|ZP_11631003.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
Length = 395
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 212/362 (58%), Gaps = 25/362 (6%)
Query: 109 KKGSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNK 163
+ +V L GMS EL + S +FR Q +M W +G TD E+ ++K
Sbjct: 15 QAAKKVNLLGMSKDELSAFFVSLGEKSFRATQ-VMKWIYQFG------VTDFFEMTNISK 67
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG----RTTVCV 219
+ L E A ++K S DGTRK +F + G ++ETV+IP + G R T+C+
Sbjct: 68 KLQYKLHEVACVVPPTVKYKEFSQDGTRKWVFEVAGGSLVETVLIPADDGKQFGRKTLCI 127
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMG 273
SSQVGCA++C FC TG+ G +R LT +EI+ Q A + V +TNVV MG
Sbjct: 128 SSQVGCALDCSFCSTGKQGFERDLTPSEIIGQLWVANQSYMENVPPTERENRVTNVVMMG 187
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N + V+ + ++M+ + S R+VT+STSG+VP++ + + ALA+SL+A
Sbjct: 188 MGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAP 247
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKN---NYKVLFEYVMLAGVNDSFDDAKRLI 390
DE+RN ++PIN+KY L LI+ + ++ +N + EYVMLAGVNDS + A +L+
Sbjct: 248 NDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLV 307
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++ +P KINLI FNP + + +++ ++ F +IL AG +R +RGDD AACG
Sbjct: 308 DLLKDLPSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGDDIDAACG 367
Query: 451 QL 452
QL
Sbjct: 368 QL 369
>gi|444920988|ref|ZP_21240826.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507724|gb|ELV07898.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 371
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 202/350 (57%), Gaps = 18/350 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
L G+++ + + +P +A+ + K +Y A D++ ++K ++ L
Sbjct: 13 LYGLTYPAMLELCEEIGEKPYRAMQIMKWVYHKG--ASSIDDMTDISKKTREKLKSRL-- 68
Query: 176 RALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
L L +L S+DGT K L L+ G IE V IP + R T+CVSSQVGCA+ C FC
Sbjct: 69 -VLELPKVLLDKPSNDGTHKWLIQLESGNAIEMVFIPED-DRGTLCVSSQVGCALECSFC 126
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI--------TNVVFMGMGEPLHNVENV 284
T R G R+L+ AEIV Q + A+RLL G + TNVV MGMGEPL N NV
Sbjct: 127 STARQGFNRNLSTAEIVGQVMLAKRLLGEYEGDVQQSQNRRVTNVVLMGMGEPLLNFTNV 186
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+A +IM+++ G S R+VT+STSG+VP L + S+ +LA+SL+A D +RN ++PI
Sbjct: 187 TQAIDIMLNDYGFGLSKRRVTLSTSGVVPALYRLKEVSDVSLAISLHAPYDTLRNELVPI 246
Query: 345 NRKYKLGLLIETLREELHFKNNY-KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
N+KY L L+E + + + Y K+ +EYVML VND +DA L L++ IP K+NLI
Sbjct: 247 NKKYPLAELLEACKAYITESSAYRKITWEYVMLKDVNDREEDAFALAKLIKDIPGKVNLI 306
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
FNP S + ++ ++ FR IL G +R +RG+D AACGQL
Sbjct: 307 PFNPFPNSGYECSSMNRINRFREILQRQGVVTTVRKTRGEDIDAACGQLA 356
>gi|365836071|ref|ZP_09377478.1| 23S rRNA m2A2503 methyltransferase [Hafnia alvei ATCC 51873]
gi|364564882|gb|EHM42625.1| 23S rRNA m2A2503 methyltransferase [Hafnia alvei ATCC 51873]
Length = 419
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 196/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + DE+ +NK + L E AE RA + + S+DGT K
Sbjct: 75 FRADQ-VMKWMYHYCCDNF----DEMTDINKVLRNKLKEIAEIRAPEVAEEQRSTDGTIK 129
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 130 WAIQVGDQRV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 187
Query: 253 VFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + + ITNVV MGMGEPL N+ NV+ A NIM+ + G S R+VT+ST
Sbjct: 188 WRAAKIIGAHKVTGQRPITNVVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLST 247
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L++ + + ALA+SL+A TDE+R+ I+PINRKY + + +R L N
Sbjct: 248 SGVVPALEKLGDMIDVALAISLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQ 307
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 308 GRVTVEYVMLDHINDGMEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 367
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G TV +R +RGDD AACGQL
Sbjct: 368 VLMEYGFTVIVRKTRGDDIDAACGQLA 394
>gi|86150562|ref|ZP_01068786.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86154131|ref|ZP_01072330.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597741|ref|ZP_01100974.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
84-25]
gi|317510835|ref|ZP_07968218.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
305]
gi|384448923|ref|YP_005656974.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|407943044|ref|YP_006858691.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni PT14]
gi|419623892|ref|ZP_14157013.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|419631454|ref|ZP_14164040.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|419636670|ref|ZP_14168862.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|419638460|ref|ZP_14170521.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 86605]
gi|419650458|ref|ZP_14181677.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|419655889|ref|ZP_14186725.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|419661704|ref|ZP_14192024.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|419663110|ref|ZP_14193313.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|419669047|ref|ZP_14198846.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|419672295|ref|ZP_14201867.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|419675380|ref|ZP_14204648.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 110-21]
gi|419676887|ref|ZP_14206050.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 87330]
gi|419684384|ref|ZP_14212985.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1577]
gi|419688885|ref|ZP_14217196.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1854]
gi|424848983|ref|ZP_18273452.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni D2600]
gi|85839014|gb|EAQ56279.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85842371|gb|EAQ59587.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88190045|gb|EAQ94021.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
84-25]
gi|284926904|gb|ADC29256.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315929674|gb|EFV08851.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
305]
gi|356487620|gb|EHI17562.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni D2600]
gi|380600042|gb|EIB20390.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23218]
gi|380610695|gb|EIB30276.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23264]
gi|380617086|gb|EIB36269.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9879]
gi|380618652|gb|EIB37770.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 86605]
gi|380628453|gb|EIB46764.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-1025]
gi|380636327|gb|EIB54040.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-988]
gi|380639504|gb|EIB56991.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-831]
gi|380643581|gb|EIB60803.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-4]
gi|380646488|gb|EIB63452.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-14]
gi|380648069|gb|EIB64944.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-11]
gi|380651756|gb|EIB68282.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 110-21]
gi|380655562|gb|EIB71875.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 87330]
gi|380664429|gb|EIB80030.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1854]
gi|380667102|gb|EIB82578.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1577]
gi|407906882|gb|AFU43711.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni PT14]
Length = 356
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 191/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|344942369|ref|ZP_08781657.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
gi|344263561|gb|EGW23832.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
Length = 370
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/319 (41%), Positives = 190/319 (59%), Gaps = 4/319 (1%)
Query: 134 RPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 193
+P +A L K +Y + + D + L+K + L+E+ + ++DGT K
Sbjct: 33 KPFRATQLLKWIYQEGVEDF--DLMTNLSKSLRAYLTENCYIATPEIVLEKVATDGTCKW 90
Query: 194 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAV 253
+ G IETV IP GR T+CVSSQ+GCA+ C FC T + G R+LT AEI+ Q
Sbjct: 91 VMQTGCGNRIETVFIP-EEGRGTLCVSSQIGCALACTFCSTAQQGFNRNLTTAEIIGQLF 149
Query: 254 FARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP 313
A++ L ITNVV MGMGEPL N +NV+ A N+M+ + S R+VT+STSG+VP
Sbjct: 150 VAQKRLGPG-NRITNVVMMGMGEPLLNFDNVVAAMNLMMDDFTFGLSKRRVTISTSGVVP 208
Query: 314 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 373
+ + + +LAVSL+A TDE+R+ ++PIN+KY L L+E R+ V FEY
Sbjct: 209 AMYRLTQVCDVSLAVSLHAVTDELRDELVPINKKYPLKELMEACRDNAKIAPRRTVTFEY 268
Query: 374 VMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGC 433
VML G+NDS DA+ L+ L++ +P KINLI FNP S + ++ E + F+ +L AG
Sbjct: 269 VMLDGINDSLQDARGLVKLLKTVPSKINLIPFNPFPNSAYRCSSKEAINCFKTLLNDAGI 328
Query: 434 TVFLRLSRGDDQMAACGQL 452
+R +RG+D AACGQL
Sbjct: 329 VTTVRKTRGEDIDAACGQL 347
>gi|294140143|ref|YP_003556121.1| hypothetical protein SVI_1372 [Shewanella violacea DSS12]
gi|293326612|dbj|BAJ01343.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 379
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 209/372 (56%), Gaps = 23/372 (6%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLN 162
N+ L +KG R L FT++ + FR Q LM W +G + T+ +N
Sbjct: 13 NLLDLDRKGLRAL-----FTDMGE----KPFRADQ-LMKWIYHFGVSDFELMTN----IN 58
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L+ E A + S DGT K + DG +ETV IP R T+CVSSQ
Sbjct: 59 KGLRAKLAARCEITAPQISSYQKSEDGTIKFAINVGDGQEVETVYIP-EGDRATLCVSSQ 117
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQ----AVFARRLLSSEVGSITNVVFMGMGEPL 278
VGCA+ C FC T + G R+LT +EI+ Q A F + + ITNVV MGMGEPL
Sbjct: 118 VGCALECTFCSTAQQGFNRNLTVSEIIGQVWRVADFIGFIKDTGERPITNVVMMGMGEPL 177
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N++NVI A +IM+ + G S R+VT+STSG+VP L + + ALAVS++A DE+R
Sbjct: 178 LNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDAIDVALAVSIHAANDELR 237
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ ++P+N+KY L + +R + N +V EYVML +NDS D A L L++
Sbjct: 238 DVLVPVNKKYPLEEFLAAIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKDT 297
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456
PCKINLI FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL G
Sbjct: 298 PCKINLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLA--G 355
Query: 457 AIQAPLLRVPEK 468
I+ R+ +K
Sbjct: 356 DIRDRTKRLAKK 367
>gi|56551928|ref|YP_162767.1| Cfr family radical SAM enzyme [Zymomonas mobilis subsp. mobilis
ZM4]
gi|81355066|sp|Q5NNQ4.1|RLMN_ZYMMO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56543502|gb|AAV89656.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 391
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 209/369 (56%), Gaps = 20/369 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
+ +K R+ L G+S +++ ++S QA + LW +Y A D + +
Sbjct: 20 IATRKDGRIDLLGLSREDIRAALKSKGLDEKQAKLRTKQLWHWMYNRG--AVAFDGMTDI 77
Query: 162 NKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVC 218
K + L+EH A+S +++T S+DGTRK L DDG E V IP + R T+C
Sbjct: 78 AKTMRPWLAEHF---AISRPEVVTMQISTDGTRKWLLKTDDGYDYEMVFIP-DADRGTLC 133
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMG 273
+SSQ+GC +NC+FC TG M L R+LT EIV Q + AR L E +TNVV MG
Sbjct: 134 ISSQIGCTLNCRFCNTGTMRLVRNLTVGEIVGQIMLARDSLDEWPSKPEGRLLTNVVMMG 193
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL+N +NV A +++ G+ S R++T+STSG+VP + + E LAVSL+A
Sbjct: 194 MGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTSGVVPMMARAGEEIGVNLAVSLHAV 253
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
T VR+ I+PIN+KY + L+ N ++ FEYVML NDS +DA L+ L+
Sbjct: 254 TKVVRDEIVPINKKYGIDELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLL 313
Query: 394 Q--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
Q +P K+NLI FNP S + +T E++ F I+ AG + +R +RG D MAACGQ
Sbjct: 314 QYYRLPAKVNLIPFNPWPNSPYECSTPERIARFSEIVFNAGISAPVRRTRGQDIMAACGQ 373
Query: 452 LGNPGAIQA 460
L + Q+
Sbjct: 374 LKSAAERQS 382
>gi|291279341|ref|YP_003496176.1| hypothetical protein DEFDS_0948 [Deferribacter desulfuricans SSM1]
gi|290754043|dbj|BAI80420.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 360
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 208/338 (61%), Gaps = 5/338 (1%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
+ +S TEL++ V +P +A L+K +Y + + DE+ L +F+K L E+ F
Sbjct: 5 IDNLSLTELKEVVTQLNEKPFRATQLFKWIYQKGVTSF--DEMTDLPLEFRKKLIENFSF 62
Query: 176 RALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYT 234
L++ + L S DG+ K+LF L+D IE+V++ + R T C+S+QVGC M CQFC T
Sbjct: 63 TKLTVVEQLESQLDGSIKVLFRLEDDNFIESVLM-FDGKRVTACLSTQVGCRMGCQFCNT 121
Query: 235 GRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE 294
++GL R+LT+AEI+ Q ++ R L ++ +TN+VFMGMGEPL N +N+ K+ +I+++E
Sbjct: 122 AKIGLIRNLTSAEIIRQIIYLRNLAETKKKPLTNLVFMGMGEPLDNFDNLTKSLDIILNE 181
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
+ L+FS RKVTVST G++ +L +A+SLNA T+++R+ +MP+N++Y + +I
Sbjct: 182 EALNFSHRKVTVSTCGIMDKLNLLAKHYKVNIAISLNAVTNKIRSKLMPVNKRYPIEEII 241
Query: 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
++ +L ++ EYV++ G+N++ DA L+ ++G+P K+NLI +N S F
Sbjct: 242 NGIK-KLPIPKRKRITLEYVLIDGLNNTTKDANLLVKQLKGLPIKVNLILYNKTKLSDFH 300
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F+ L G F+R S G D AACGQL
Sbjct: 301 SPQLNYALNFQKTLINNGIATFIRKSFGQDIEAACGQL 338
>gi|344343058|ref|ZP_08773928.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
gi|343805610|gb|EGV23506.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
Length = 364
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 179/297 (60%), Gaps = 4/297 (1%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D + L ++ L E E R + S+DGT K + L DG IETV IP R R+
Sbjct: 48 DAMTDLPLALRQQLRERTEIRLPRIVHAHPSADGTIKWVMELTDGQHIETVFIPEGR-RS 106
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG 275
T+CVSSQVGCA++C+FC T + G R+L +EI+ Q A R L + S TNVV MGMG
Sbjct: 107 TICVSSQVGCALDCRFCATAKQGFNRNLAVSEIIAQVWHATRHLQA---SPTNVVMMGMG 163
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + V+KA +M + + ++VTVST G+VP +++ S+ +LAVSL+A D
Sbjct: 164 EPLANFDAVVKAMAVMQDDLAYMLAKQRVTVSTVGIVPAIERLREVSDVSLAVSLHAPND 223
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+RN ++PINRKY L LI R + KV +EY+M+AG+NDS AK+LI L++G
Sbjct: 224 ALRNELVPINRKYPLAELIPACRRYVAADKRRKVTWEYIMIAGLNDSIAHAKQLIRLLEG 283
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P KINLI FNP G + + E++ FR L +G R +RG++ AACGQL
Sbjct: 284 TPSKINLIPFNPFPGVDYATSPPEQVEAFRQRLIRSGLIATTRKTRGEEIAAACGQL 340
>gi|451936487|ref|YP_007460341.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777410|gb|AGF48385.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 379
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 151/383 (39%), Positives = 206/383 (53%), Gaps = 28/383 (7%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHA----FRPGQALMLWKRLYGDDIWAHCTDELEGLNKD 164
KK S V L G+ L ++ ++ FR GQ L W + D + D + ++
Sbjct: 2 KKNSLVNLIGLDSESLSLFLEENSIKSSFRIGQ-LHKWIHKFSADSF----DVMTNISCQ 56
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L E ++ A+ ++ S DGT K LF + IETV IP + R T+C+SSQ G
Sbjct: 57 LRHKLKEISKIEAMPIESETLSKDGTIKWLFDAGNSNAIETVFIP-EKNRRTLCISSQAG 115
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR-----------------LLSSEVGSIT 267
CA+NC FC TG G R+L+A EIV Q A+R + S IT
Sbjct: 116 CAVNCAFCATGHQGFNRNLSANEIVGQLWSAQRSINLNLITGIEDLNNKNTIKSGNNLIT 175
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
NVVFMGMGEPL N + VIK+ +++ FS RK+TVSTSG+VP + + + +LA
Sbjct: 176 NVVFMGMGEPLLNYKQVIKSIKLLLDVNAYGFSRRKITVSTSGIVPMIDKLARDCPVSLA 235
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
VSL+A D++RN ++PIN+KY L LIE+ + + + FEY ML+GVND+ K
Sbjct: 236 VSLHAANDDLRNKLVPINKKYPLNELIESCKRYITRSPRDFITFEYCMLSGVNDTDKHIK 295
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
LI LV I CKINLI FN S F T EK+ F N L +G +R +RGDD A
Sbjct: 296 ELINLVSQIKCKINLIPFNSFESSDFRAPTIEKINSFANKLLNSGIMTTVRKTRGDDIHA 355
Query: 448 ACGQL-GNPGAIQAPLLRVPEKF 469
ACGQL GN + + +P K
Sbjct: 356 ACGQLAGNVKNVTKIAMHIPIKI 378
>gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16]
gi|123032871|sp|Q0K959.1|RLMN_CUPNH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16]
Length = 384
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 186/328 (56%), Gaps = 13/328 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W YG A D + L K ++ L+ AE RA + S+DGTRK
Sbjct: 27 FRARQ-LQRWIHHYG----ASRFDAMSDLAKSLREKLATRAEIRAPAAITDHLSADGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 82 WLLDVGQGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQL 140
Query: 253 VFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
A + ++G I+NVV MGMGEPL N + V+ A +M+ + S R+VT
Sbjct: 141 WMAEFAMREQLGRGPKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 201 LSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAP 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+ FEY ML GVND + A+ L+ LV +PCK NLI FNP S + ++++ F
Sbjct: 261 RDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFA 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 321 QVLMDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 419
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 196/330 (59%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTD---ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D ++ +NK F+ L E AE RA + D SSDG
Sbjct: 75 FRADQ-VMKW-------IYHYCCDDFNQMTDINKVFRSKLQEIAEIRAPEVVDEQRSSDG 126
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K ++ G +ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 127 TIKWAILVG-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 184
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ + + ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT
Sbjct: 185 GQVWRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVT 244
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK- 364
+STSG+VP L + + + ALA+SL+A TD++RN IMPIN+KY + + + +R L
Sbjct: 245 LSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSN 304
Query: 365 -NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++
Sbjct: 305 ANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDR 364
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 365 FSKVLMEYGFTTIVRKTRGDDIDAACGQLA 394
>gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia
profundicola AmH]
gi|259491991|sp|B9L721.1|RLMN_NAUPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH]
Length = 354
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/341 (37%), Positives = 194/341 (56%), Gaps = 17/341 (4%)
Query: 123 ELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKD 182
EL ++ FR Q R Y DD +E++ + KD K L + L L +
Sbjct: 13 ELMEFGIQPKFRTKQLYQWVYRKYVDDF-----EEMKNIPKDLKAKLKKEFIINPLELIN 67
Query: 183 ILTSSDGTRKILFMLDDGLVIETVVIP----------CNRGRTTVCVSSQVGCAMNCQFC 232
++DGT K LF + D +ETV+I + TVCVS+QVGC + C FC
Sbjct: 68 HEIATDGTEKFLFKMHDNHTVETVLIKMKDEEIKDGKIKEAKYTVCVSTQVGCKVGCAFC 127
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
T + G R+L+A EIV Q + ++ + + NVV+MGMGEPL N + ++KA I+
Sbjct: 128 LTAKGGFVRNLSAGEIVAQVWWMKKFKNFDENKALNVVYMGMGEPLDNYDALVKAIKILA 187
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLG 351
+ G++ SPR+ TVSTSG+ P++K+ NE+ LA+SL+A DE+R ++P+N+ Y +
Sbjct: 188 NPDGMNISPRRQTVSTSGIAPKIKRLGNENLGVNLAISLHAVDDELREQLIPLNKAYNIE 247
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
+I+ +R E KV+FEY+++ VND + AK+L+ L+ GIP K+NLI FNP+ G+
Sbjct: 248 SVIDAIR-EFPIDKRKKVMFEYLVIKDVNDDIESAKKLVKLLNGIPSKVNLIYFNPYPGT 306
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F D M +F++ L G +R S+G D AACGQL
Sbjct: 307 NFKRPDDATMKKFQDYLINKGIMCTIRKSKGMDISAACGQL 347
>gi|392980211|ref|YP_006478799.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
gi|392326144|gb|AFM61097.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
Length = 388
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 207/355 (58%), Gaps = 14/355 (3%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKD 164
+P K ++ L ++ +++++ + +P +A +M W Y D + TD +NK
Sbjct: 15 VPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTD----INKV 70
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L E AE RA + + SSDGT K + D V ETV IP R T+CVSSQVG
Sbjct: 71 LRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSSQVG 128
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEPLHN 280
CA+ C+FC T + G R+L +EI+ Q A +++ + G+ ITNVV MGMGEPL N
Sbjct: 129 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEPLLN 188
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+
Sbjct: 189 LTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDE 248
Query: 341 IMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
I+PIN+KY + + +R L N +V EYVML VND + A +L L++ PC
Sbjct: 249 IVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPC 308
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 309 KINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|419627032|ref|ZP_14159945.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23263]
gi|380607360|gb|EIB27227.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23263]
Length = 356
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 191/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L+KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLSKDLRLELAQNFHFSPVKCFKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|307250523|ref|ZP_07532468.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307257327|ref|ZP_07539097.1| hypothetical protein appser10_13250 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306857465|gb|EFM89576.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306864177|gb|EFM96090.1| hypothetical protein appser10_13250 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 393
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 215/367 (58%), Gaps = 14/367 (3%)
Query: 95 CSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWA 152
C+ N+ V K ++ L ++ E+++ +P +A LM W +G+D +
Sbjct: 8 CASEIQATNVAVQHPKSEKINLMNLTRQEMRELFAEMGEKPFRADQLMKWIYHFGEDNF- 66
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR 212
D + +NK ++ L + AE +A + SSDGT K + D IETV IP +
Sbjct: 67 ---DNMSNINKVLREKLKQIAEIKAPEVSVEQRSSDGTIKWAMQVGDQQ-IETVYIPED- 121
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITN 268
R T+CVSSQVGCA+ C+FC T + G R+LT +EI+ Q A +++ + V ITN
Sbjct: 122 DRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGVRPITN 181
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL N+ NVI A IM+ + S R+VT+ST+G+VP L + + ALA+
Sbjct: 182 VVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAI 241
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDA 386
SL+A DE+R+ IMPIN+KY + +L++++ + E+ N+ KV EYV+L VND + A
Sbjct: 242 SLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHA 301
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 302 HQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 361
Query: 447 AACGQLG 453
AACGQL
Sbjct: 362 AACGQLA 368
>gi|307246190|ref|ZP_07528272.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255171|ref|ZP_07536989.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259608|ref|ZP_07541333.1| hypothetical protein appser11_14070 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853125|gb|EFM85348.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862044|gb|EFM94020.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866544|gb|EFM98407.1| hypothetical protein appser11_14070 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 393
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 215/367 (58%), Gaps = 14/367 (3%)
Query: 95 CSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWA 152
C+ N+ V K ++ L ++ E+++ +P +A LM W +G+D +
Sbjct: 8 CASEIQATNVAVQHPKSEKINLMNLTRKEMRELFAEMGEKPFRADQLMKWIYHFGEDNF- 66
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR 212
D + +NK ++ L + AE +A + SSDGT K + D IETV IP +
Sbjct: 67 ---DNMSNINKVLREKLKQIAEIKAPEVSVEQRSSDGTIKWAMQVGDQQ-IETVYIPED- 121
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITN 268
R T+CVSSQVGCA+ C+FC T + G R+LT +EI+ Q A +++ + V ITN
Sbjct: 122 DRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITN 181
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL N+ NVI A IM+ + S R+VT+ST+G+VP L + + ALA+
Sbjct: 182 VVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAI 241
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDA 386
SL+A DE+R+ IMPIN+KY + +L++++ + E+ N+ KV EYV+L VND + A
Sbjct: 242 SLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHA 301
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 302 HQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 361
Query: 447 AACGQLG 453
AACGQL
Sbjct: 362 AACGQLA 368
>gi|165976692|ref|YP_001652285.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303250645|ref|ZP_07336842.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252906|ref|ZP_07534795.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307261750|ref|ZP_07543416.1| hypothetical protein appser12_13090 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263937|ref|ZP_07545541.1| hypothetical protein appser13_13460 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|205829706|sp|B0BQK6.1|RLMN_ACTPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|165876793|gb|ABY69841.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302650633|gb|EFL80792.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859695|gb|EFM91719.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306868568|gb|EFN00379.1| hypothetical protein appser12_13090 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870802|gb|EFN02542.1| hypothetical protein appser13_13460 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 393
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 215/367 (58%), Gaps = 14/367 (3%)
Query: 95 CSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWA 152
C+ N+ V K ++ L ++ E+++ +P +A LM W +G+D +
Sbjct: 8 CASEIQATNVAVQHPKSEKINLMNLTRQEMRELFAEMGEKPFRADQLMKWIYHFGEDNF- 66
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR 212
D + +NK ++ L + AE +A + SSDGT K + D IETV IP +
Sbjct: 67 ---DNMSNINKVLREKLKQIAEIKAPEVSVEQRSSDGTIKWAMQVGDQQ-IETVYIPED- 121
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITN 268
R T+CVSSQVGCA+ C+FC T + G R+LT +EI+ Q A +++ + V ITN
Sbjct: 122 DRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITN 181
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL N+ NVI A IM+ + S R+VT+ST+G+VP L + + ALA+
Sbjct: 182 VVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAI 241
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDA 386
SL+A DE+R+ IMPIN+KY + +L++++ + E+ N+ KV EYV+L VND + A
Sbjct: 242 SLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHA 301
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 302 HQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 361
Query: 447 AACGQLG 453
AACGQL
Sbjct: 362 AACGQLA 368
>gi|32035054|ref|ZP_00135120.1| COG0820: Predicted Fe-S-cluster redox enzyme [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208740|ref|YP_001053965.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|205829705|sp|A3N1S4.1|RLMN_ACTP2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|126097532|gb|ABN74360.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 393
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 215/367 (58%), Gaps = 14/367 (3%)
Query: 95 CSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWA 152
C+ N+ V K ++ L ++ E+++ +P +A LM W +G+D +
Sbjct: 8 CASEIQATNVAVQHPKSEKINLMNLTRKEMRELFAEMGEKPFRADQLMKWIYHFGEDNF- 66
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR 212
D + +NK ++ L + AE +A + SSDGT K + D IETV IP +
Sbjct: 67 ---DNMSNINKVLREKLKQIAEIKAPEVSVEQRSSDGTIKWAMQVGDQQ-IETVYIPED- 121
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITN 268
R T+CVSSQVGCA+ C+FC T + G R+LT +EI+ Q A +++ + V ITN
Sbjct: 122 DRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGVRPITN 181
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL N+ NVI A IM+ + S R+VT+ST+G+VP L + + ALA+
Sbjct: 182 VVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAI 241
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDA 386
SL+A DE+R+ IMPIN+KY + +L++++ + E+ N+ KV EYV+L VND + A
Sbjct: 242 SLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHA 301
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 302 HQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 361
Query: 447 AACGQLG 453
AACGQL
Sbjct: 362 AACGQLA 368
>gi|430377501|ref|ZP_19431634.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
gi|429540638|gb|ELA08667.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
Length = 402
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/352 (39%), Positives = 211/352 (59%), Gaps = 19/352 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD--ELEGLNKDFKKMLSEHA 173
L GMS T+L ++ ++ +P +A + K +Y + TD E+ L+K ++ L+ A
Sbjct: 28 LLGMSKTKLMEFFKNLDEKPFRATQVMKWIYQFGV----TDFFEMTNLSKKLQEKLTNIA 83
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR----GRTTVCVSSQVGCAMNC 229
++K S DGTRK +F + G ++ETV+IP + GR T+C+SSQVGCA++C
Sbjct: 84 CVIPPAVKYKEFSEDGTRKWVFEVAGGSLVETVLIPADDNKQFGRKTLCISSQVGCALDC 143
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMGMGEPLHNVEN 283
FC TG+ G +R+LT +EI+ Q A + V +TNVV MGMGEPL N E
Sbjct: 144 SFCSTGKQGFERNLTESEIIGQLFVANQSYMEGVPAVKRENRVTNVVMMGMGEPLLNYEP 203
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ + ++M+ + G S R+VT+STSG+VP++ + + ALA+SL+A D++RN ++P
Sbjct: 204 VVASMSLMLDDFGFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAPNDKLRNELVP 263
Query: 344 INRKYKLGLLIETLREELHFKN---NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
IN+KY L LI+ + ++ +N V EYVML VNDS + A +L L+Q +P KI
Sbjct: 264 INKKYPLAELIKAAKAYVYDENPRHKKHVTIEYVMLKDVNDSDEHAHQLAVLLQDLPSKI 323
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NLI FNP + + +++ ++ F IL AG +R +RGDD AACGQL
Sbjct: 324 NLIPFNPFAHAPYERSSNNRIHAFSGILNNAGFVCTIRQTRGDDIDAACGQL 375
>gi|338972590|ref|ZP_08627963.1| ribosomal RNA large subunit methyltransferase N [Bradyrhizobiaceae
bacterium SG-6C]
gi|338234375|gb|EGP09492.1| ribosomal RNA large subunit methyltransferase N [Bradyrhizobiaceae
bacterium SG-6C]
Length = 403
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 195/330 (59%), Gaps = 18/330 (5%)
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
Q L W + G +A T+ ++KD + L +H + S+DGTRK L
Sbjct: 57 AQQLWHWMYVRGAQTFADMTN----VSKDMRAELEKHFTVDRPEVVTEQISNDGTRKWLL 112
Query: 196 ML-DDGL----VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
L DG+ +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV
Sbjct: 113 RLPGDGVGRAHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVG 171
Query: 251 QAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
Q + AR L+ + +TN+V MGMGEPL+N + V A I+ +G+ S R
Sbjct: 172 QIMVARDRLNDWIDRETPNGNRLVTNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGISRR 231
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
++T+STSG+VP + + +E LA+SL+A DE+RN ++P+NRKY + L+E R
Sbjct: 232 RITLSTSGVVPNIARTGDEIGVMLAISLHAVRDELRNELVPLNRKYPIKELLEACRAYPG 291
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
N+ ++ FEYVML GVNDS DDA+ L+ L++GIP KINLI FNP GS++ + E++
Sbjct: 292 SSNSRRITFEYVMLKGVNDSLDDARLLVKLLKGIPAKINLIPFNPWPGSKYECSDWEQIE 351
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + AG + +R RG D +AACGQL
Sbjct: 352 KFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|338741467|ref|YP_004678429.1| Fe-S protein [Hyphomicrobium sp. MC1]
gi|337762030|emb|CCB67865.1| putative Fe-S containing enzyme (yfgB) [Hyphomicrobium sp. MC1]
Length = 397
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 200/344 (58%), Gaps = 33/344 (9%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDG 189
R GQ LW +Y + + +++ ++KD ++ L A+ L +I++ S DG
Sbjct: 44 MRVGQ---LWSWIYVRGVTSF--EDMTDVSKDLRRQL---ADLYTLDRPEIVSEQISVDG 95
Query: 190 TRKILFMLDDGL------VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
TRK L L IETV IP R T+C+SSQVGC +NC FC+TG L R+L
Sbjct: 96 TRKWLLRLAKRSHEARPPEIETVYIP-ESDRGTLCISSQVGCTLNCSFCHTGTQRLVRNL 154
Query: 244 TAAEIVEQAVFAR---------------RLLSSEVGSITNVVFMGMGEPLHNVENVIKAA 288
A EIV Q + AR RLL + ITNVV MGMGEPL+N +NV A
Sbjct: 155 EAEEIVGQIMLARDRIGDWPGAKGPDDGRLLPNAERKITNVVLMGMGEPLYNFDNVKAAM 214
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++ +GL S R++T+STSG+VP++ ++ E++ LA+SL+AT D +R+ ++PIN+KY
Sbjct: 215 DVASDGEGLSLSKRRITLSTSGVVPEIPRWGEEADTMLAISLHATNDALRDELVPINKKY 274
Query: 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH 408
+ L+E R N ++ FEYVML GVNDS +A+ L+ L+ GIP KINLI FNP
Sbjct: 275 PIAELMEACRNYPGLSNARRITFEYVMLKGVNDSLAEARALVRLLSGIPAKINLIPFNPW 334
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
GS++ + E + F +++ AG +R RG D +AACGQL
Sbjct: 335 PGSRYECSDWETIERFADVVNRAGYASPVRTPRGRDILAACGQL 378
>gi|385870746|gb|AFI89266.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium sp.
SCC3193]
Length = 400
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 196/330 (59%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTD---ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D ++ +NK F+ L E AE RA + D SSDG
Sbjct: 56 FRADQ-VMKW-------IYHYCCDDFNQMTDINKVFRSKLQEIAEIRAPEVVDEQRSSDG 107
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K ++ G +ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 108 TIKWAILVG-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 165
Query: 250 EQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ + G ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT
Sbjct: 166 GQVWRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVT 225
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK- 364
+STSG+VP L + + + ALA+SL+A TD++RN IMPIN+KY + + + +R L
Sbjct: 226 LSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSN 285
Query: 365 -NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++
Sbjct: 286 ANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDR 345
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 346 FSKVLMEYGFTTIVRKTRGDDIDAACGQLA 375
>gi|421080362|ref|ZP_15541296.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
gi|401705215|gb|EJS95404.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
Length = 400
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 196/330 (59%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDE---LEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + +NK F+ L E AE RA + D SSDG
Sbjct: 56 FRADQ-VMKW-------IYHYCCDDFNQMTDINKVFRSKLQEIAEIRAPEVVDEQRSSDG 107
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K ++ G +ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 108 TIKWAILVG-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 165
Query: 250 EQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ + G ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT
Sbjct: 166 GQVWRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVT 225
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK- 364
+STSG+VP L + + + ALA+SL+A TD++RN IMPIN+KY + + + +R L
Sbjct: 226 LSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSN 285
Query: 365 -NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++
Sbjct: 286 ANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDR 345
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 346 FSKVLMEYGFTTIVRKTRGDDIDAACGQLA 375
>gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 419
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 196/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + DE+ +NK + L E AE RA + + S+DGT K
Sbjct: 75 FRADQ-VMKWMYHYCCDNF----DEMTDINKVLRNKLKEIAEIRAPEVAEEQRSTDGTIK 129
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 130 WAIQVGDQRV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 187
Query: 253 VFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + + ITNVV MGMGEPL N+ NV+ A NIM+ + G S R+VT+ST
Sbjct: 188 WRAAKIIGAHKVTGQRPITNVVMMGMGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLST 247
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L++ + + ALA+SL+A TDE+R+ I+PINRKY + + +R L N
Sbjct: 248 SGVVPALEKLGDMIDVALAISLHAPTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQ 307
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 308 GRVTVEYVMLDHINDGMEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 367
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G TV +R +RGDD AACGQL
Sbjct: 368 VLMEYGFTVIVRKTRGDDIDAACGQLA 394
>gi|148555870|ref|YP_001263452.1| radical SAM protein [Sphingomonas wittichii RW1]
gi|205829890|sp|A5VAJ8.1|RLMN_SPHWW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148501060|gb|ABQ69314.1| radical SAM enzyme, Cfr family [Sphingomonas wittichii RW1]
Length = 402
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 207/361 (57%), Gaps = 18/361 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDEL 158
++ P+ R+ L G+S +L+ + + P QA + LW +Y G +A TD
Sbjct: 23 DLKPRVDGRIDLLGLSRDDLRMALETAQLEPRQAKLRAKQLWHWIYNRGATDFAVMTD-- 80
Query: 159 EGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVC 218
+ KD + L + + + S+DGTRK L DDG E V IP + R T+C
Sbjct: 81 --IAKDMRGWLDQRFVVSRPEVVEAQVSTDGTRKWLLRSDDGQDYEMVFIP-DADRGTLC 137
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMG 273
VSSQVGC +NC+FC+TG M L R+LT AEIV Q + AR L E +TN+V MG
Sbjct: 138 VSSQVGCTLNCRFCHTGTMKLVRNLTPAEIVGQVMLARDALGEWPSQPEGRMLTNIVMMG 197
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL+N +NV A +++ GL S R++T+ST+G+VP + + E LAVSL+A
Sbjct: 198 MGEPLYNFDNVRDALKLVMDGDGLALSKRRITLSTAGVVPMMARAGEEIGVNLAVSLHAI 257
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
T EVR+ I+P+NRKY + L++ + N ++ FEYVML ND +DA L+ L+
Sbjct: 258 TKEVRDEIVPLNRKYGIEDLLQACADYPGANNARRITFEYVMLKDKNDRDEDALELVRLI 317
Query: 394 QG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
+ +P K+NLI FNP G+ + + +++ F +++ AG + +R RG D MAACGQ
Sbjct: 318 RKYRLPAKVNLIPFNPWPGAPYECSDPDRVARFSDLIFKAGISAPVRTPRGRDIMAACGQ 377
Query: 452 L 452
L
Sbjct: 378 L 378
>gi|365888213|ref|ZP_09427000.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. STM 3809]
gi|365336119|emb|CCD99531.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. STM 3809]
Length = 403
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 190/326 (58%), Gaps = 17/326 (5%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG 200
LW LY A DE+ ++KD + L+E + S+DGTRK L L G
Sbjct: 59 LWHWLYFRG--AQSFDEMTSVSKDTRNGLAERFTVDRPEVVAEQISNDGTRKWLLRLPSG 116
Query: 201 ------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
+E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV Q +
Sbjct: 117 DDLQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCAFCHTGTQRLVRNLTAGEIVGQIMV 175
Query: 255 ARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV 306
AR L+ +TN+V MGMGEPL+N + V A I+ +G+ S R++T+
Sbjct: 176 ARDRLNDWADRETPHGNRLVTNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGISRRRITL 235
Query: 307 STSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN 366
STSG+VP +K+ E LA+SL+A DE+RN ++P+NRKY + L++ R+ N
Sbjct: 236 STSGVVPNIKRAGEEIGVMLAISLHAVRDELRNELVPLNRKYPIAELLQACRDYPGASNA 295
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
++ FEYVML GVNDS DDA+ L+ L++GIP KINLI FNP GS + + E++ +F
Sbjct: 296 RRITFEYVMLKGVNDSLDDARLLVKLLKGIPAKINLIPFNPWPGSAYECSDWEQIEKFSE 355
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQL 452
+ AG + +R RG D +AACGQL
Sbjct: 356 YVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae WPP163]
gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
Length = 400
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 196/330 (59%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTD---ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D ++ +NK F+ L E AE RA + D SSDG
Sbjct: 56 FRADQ-VMKW-------IYHYCCDDFNQMTDINKVFRSKLQEIAEIRAPEVVDEQRSSDG 107
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K ++ G +ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 108 TIKWAILVG-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 165
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ + + ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT
Sbjct: 166 GQVWRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVT 225
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK- 364
+STSG+VP L + + + ALA+SL+A TD++RN IMPIN+KY + + + +R L
Sbjct: 226 LSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSN 285
Query: 365 -NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++
Sbjct: 286 ANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDR 345
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 346 FSKVLMEYGFTTIVRKTRGDDIDAACGQLA 375
>gi|153951816|ref|YP_001398992.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. doylei 269.97]
gi|205829694|sp|A7H662.1|RLMN_CAMJD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|152939262|gb|ABS44003.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. doylei
269.97]
Length = 356
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 191/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC +C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDTEGKRISHARYTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|330996801|ref|ZP_08320673.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
11841]
gi|329572523|gb|EGG54174.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella xylaniphila YIT
11841]
Length = 348
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 196/342 (57%), Gaps = 11/342 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
++ L GM+ +EL+ A + + LYG + + DE+ ++ + +L+E
Sbjct: 3 DKIALLGMTLSELKSVAGEIGMPSFAARQMAEWLYGKKVAS--IDEMTNISAKNRCLLNE 60
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
L D S+DGT K L+ G +ETV IP + R T+CVSSQVGC MNC+F
Sbjct: 61 RYTVGCLGPVDCQRSADGTVKYLYRTAAGGYVETVYIP-DGDRATLCVSSQVGCRMNCRF 119
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLS-SEVGSITNVVFMGMGEPLHNVENVIKAANI 290
C TG+ G LTAA+I+ Q L S E ++TNVVFMG GEPL N++NV++A I
Sbjct: 120 CMTGKQGFSGQLTAADILNQ------LYSLPERDTLTNVVFMGQGEPLDNLDNVLRATEI 173
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350
+ + G +SP+++TVST GL LK+FL+ES C LAVSL+ + R +MP Y L
Sbjct: 174 LTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLHNPFADQRARLMPAENSYGL 233
Query: 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
++ LR E F + ++ FEY M GVND+ AK L+ L+ G+ C++NLI F+P G
Sbjct: 234 QEIVALLR-EYDFTHQRRLSFEYTMFEGVNDTLAHAKELLRLLGGVECRMNLIRFHPVPG 292
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
T++E M+ FR+ L G G +R SRG D AACG L
Sbjct: 293 VDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGLL 334
>gi|339326398|ref|YP_004686091.1| ribosomal RNA large subunit methyltransferase N [Cupriavidus
necator N-1]
gi|338166555|gb|AEI77610.1| ribosomal RNA large subunit methyltransferase N [Cupriavidus
necator N-1]
Length = 384
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 186/328 (56%), Gaps = 13/328 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W YG A D + L K ++ L+ AE RA + S+DGTRK
Sbjct: 27 FRARQ-LQRWIHHYG----ASRFDAMSDLAKSLREKLATRAEIRAPAAITDNLSADGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 82 WLLDVGQGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQL 140
Query: 253 VFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
A + ++G I+NVV MGMGEPL N + V+ A +M+ + S R+VT
Sbjct: 141 WMAEFAMREQLGRGPKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 201 LSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAP 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+ FEY ML GVND + A+ L+ LV +PCK NLI FNP S + ++++ F
Sbjct: 261 RDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFA 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 321 QVLMDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|397170950|ref|ZP_10494360.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
aestuarii B11]
gi|396087424|gb|EJI85024.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
aestuarii B11]
Length = 375
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 207/349 (59%), Gaps = 18/349 (5%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
V L ++ +++Q++ S +P +A +M W I+ +C D+ + +NK +++
Sbjct: 8 VNLLDLTRSQMQEFFVSLGEKPFRADQVMKW-------IYHYCVDDFDKMTNINKKLREL 60
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L +A + S+DGT K + L+ G +ETV IP + R T+CVSSQVGCA++
Sbjct: 61 LKARCVIKAPVVATRQDSADGTIKFVMALEGGQEVETVWIP-EKDRRTLCVSSQVGCALD 119
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENV 284
C FC T + G R+L+ +EI+ Q +++ S + G +TNVV MGMGEPL N+ NV
Sbjct: 120 CSFCSTAQQGFNRNLSVSEIIGQVWRVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNV 179
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +M+ + G S R+VT+STSG+VP L + + ALA+SL+A + +R+ ++P+
Sbjct: 180 VPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPV 239
Query: 345 NRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
N+KY + + R + H K N KV EYVML G+NDS D A L ++ P KINLI
Sbjct: 240 NKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKDTPSKINLI 299
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 300 PFNPYPGSPYKRSSNSRIDRFNKVLQDHGFTVMVRKTRGDDIDAACGQL 348
>gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 393
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 215/367 (58%), Gaps = 14/367 (3%)
Query: 95 CSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWA 152
C+ N+ V K ++ L ++ E+++ +P +A LM W +G+D +
Sbjct: 8 CASEIQATNVAVQHPKSEKINLMNLTRKEMRELFAEMGEKPFRADQLMKWIYHFGEDNF- 66
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR 212
D + +NK ++ L + AE +A + SSDGT K + D IETV IP +
Sbjct: 67 ---DNMSNINKVLREKLKQIAEIKAPEVSVEQRSSDGTIKWAMQVGDQQ-IETVYIPED- 121
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITN 268
R T+CVSSQVGCA+ C+FC T + G R+LT +EI+ Q A +++ + V ITN
Sbjct: 122 DRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITN 181
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL N+ NVI A IM+ + S R+VT+ST+G+VP L + + ALA+
Sbjct: 182 VVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAI 241
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDA 386
SL+A DE+R+ IMPIN+KY + +L++++ + E+ N+ KV EYV+L VND + A
Sbjct: 242 SLHAPNDELRDEIMPINKKYNIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHA 301
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 302 HQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 361
Query: 447 AACGQLG 453
AACGQL
Sbjct: 362 AACGQLA 368
>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
atrosepticum SCRI1043]
gi|81644326|sp|Q6D273.1|RLMN_ERWCT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 398
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 194/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + TD +NK F+ L E AE RA + D SSDGT K
Sbjct: 54 FRADQ-VMKWMYHYCCDDFNQMTD----INKVFRTKLQEIAEIRAPEVVDEQRSSDGTIK 108
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
++ G +ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 109 WAILVG-GQRVETVYIP-EEERATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 166
Query: 253 VFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + + ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT+ST
Sbjct: 167 WRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLST 226
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + + ALA+SL+A TD++RN IMPIN+KY + + + +R L N
Sbjct: 227 SGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQ 286
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 287 GRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 346
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G T +R +RGDD AACGQL
Sbjct: 347 VLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|410618485|ref|ZP_11329430.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
gi|410162027|dbj|GAC33568.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
Length = 380
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/349 (39%), Positives = 207/349 (59%), Gaps = 9/349 (2%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
K +++ L + L+++ S +P +A + K +Y I D++ LNK ++ L
Sbjct: 8 KPTKINLLNFNRAGLREYFSSIGEKPFRADQMMKWIYQQGISDF--DQMTNLNKILREKL 65
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ E +A + +SDGT K + L+ G +ETV IP + R T+CVSSQVGCA+ C
Sbjct: 66 NAQCEIKAPEIAYQQAASDGTIKFVLRLEGGQEVETVWIP-DADRATLCVSSQVGCALEC 124
Query: 230 QFCYTGRMGLKRHLTAAEIVEQA--VFARRLLSSEVGS--ITNVVFMGMGEPLHNVENVI 285
FC T + G R+L+ +EI+ Q V LS++ ITNVV MGMGEPL N++NV+
Sbjct: 125 TFCSTAQQGFNRNLSVSEIIGQVWRVATTIGLSNDSSKRPITNVVMMGMGEPLLNLKNVV 184
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +M+ + S R+VT+STSG+VP L ++ + ALA+SL+A D++R+ ++P+N
Sbjct: 185 PAMELMLDDLAFGLSKRRVTLSTSGVVPALDILGDKIDVALAISLHAPDDKLRDELVPVN 244
Query: 346 RKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
+KY + + +R L N KV EYVML GVNDS D A L ++ PCK+NLI
Sbjct: 245 KKYPIQEFLAGVRRYLAKSHANQGKVTVEYVMLNGVNDSTDQAHALAKVLADTPCKLNLI 304
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP+ GS +T +++ ++ F +L+ G V +R +RGDD AACGQL
Sbjct: 305 PFNPYPGSPYTRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 418
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 221/399 (55%), Gaps = 24/399 (6%)
Query: 65 TFLSPVSPTRRPLSTATCSPQIPLATIEDYC-SDAGGGDNINVLPKKGSRVLLKGMSFTE 123
T +S ++ + S T S Q T+ ++ + A ++ +K + + L +
Sbjct: 9 TVVSEMTASNTTASKTTVSEQ----TVSEFSPASADASQSVKASAEKINLLDLNRQQMRD 64
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDE---LEGLNKDFKKMLSEHAEFRALSL 180
L + FR Q +M W I+ +C D+ + +NK F+ L E AE RA +
Sbjct: 65 LFMSMGEKPFRADQ-VMKW-------IYHYCCDDFNQMTDINKVFRSKLQEIAEIRAPEV 116
Query: 181 KDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
D SSDGT K ++ G +ETV IP R T+CVSSQVGCA+ C+FC T + G
Sbjct: 117 VDEQRSSDGTIKWAILVG-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFN 174
Query: 241 RHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQG 296
R+L +EI+ Q A +++ + G ITNVV MGMGEPL N+ NV+ A IM+ + G
Sbjct: 175 RNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFG 234
Query: 297 LHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356
S R+VT+STSG+VP L + + + ALA+SL+A TD++RN IMPIN+KY + +
Sbjct: 235 FGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKYNIETFLSA 294
Query: 357 LREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
+R L N +V EYVML +ND + A +L ++ PCKINLI +NP G+ +
Sbjct: 295 VRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYG 354
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 355 RSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 393
>gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 388
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 207/355 (58%), Gaps = 14/355 (3%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKD 164
+P K ++ L ++ +++++ + +P +A +M W Y D + TD +NK
Sbjct: 15 VPNKNGKINLLDLNRQQMREFFKELGEKPFRADQVMKWMYHYCSDNFDDMTD----INKV 70
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVG
Sbjct: 71 LRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVG 128
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEPLHN 280
CA+ C+FC T + G R+L +EI+ Q A +++ + G+ ITNVV MGMGEPL N
Sbjct: 129 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEPLLN 188
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+
Sbjct: 189 LTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDE 248
Query: 341 IMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
I+PIN+KY + + +R L N +V EYVML VND + A L L++ PC
Sbjct: 249 IVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKDTPC 308
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 309 KINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|92119085|ref|YP_578814.1| hypothetical protein Nham_3626 [Nitrobacter hamburgensis X14]
gi|123386907|sp|Q1QHE3.1|RLMN_NITHX RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91801979|gb|ABE64354.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter hamburgensis
X14]
Length = 397
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 200/355 (56%), Gaps = 21/355 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G+S E+ + + + P Q M LW +Y A E+ ++KD + L +
Sbjct: 24 LIGLSRAEISERLAAIGVAPAQRRMRVQQLWHWMYVRG--AKTVGEMTNVSKDMRAELEK 81
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLV------IETVVIPCNRGRTTVCVSSQVGC 225
H + S+DGTRK L L G +E V IP R T+CVSSQVGC
Sbjct: 82 HVTVDRPEVVAEQISNDGTRKWLLRLPSGNTLEKPHEVECVYIP-ETDRGTLCVSSQVGC 140
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEP 277
+NC FC+TG L R+LTA EIV Q + AR L+ +TN+V MGMGEP
Sbjct: 141 TLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADRETPHGNRLVTNIVMMGMGEP 200
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L+N + V A I+ +G+ S R++T+STSG+VP + + E LA+SL+A DE+
Sbjct: 201 LYNFDAVRDALLIVADNEGIGISKRRITLSTSGVVPNIVRTGEEIGVMLAISLHAVRDEL 260
Query: 338 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDAK L+ L++GI
Sbjct: 261 RNELVPLNRKYPIAELMQACRDYPAASNAKRITFEYVMLKGVNDSLDDAKLLVKLLKGIH 320
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
KINLI FNP G+++ + E++ +F + AG + +R RG D +AACGQL
Sbjct: 321 AKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 375
>gi|423097174|ref|ZP_17084970.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens Q2-87]
gi|397884551|gb|EJL01034.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens Q2-87]
Length = 382
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEIRGPEVVSQDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
Length = 388
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 209/356 (58%), Gaps = 16/356 (4%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLNK 163
+P K +++ L ++ +L+++ + +P +A + K +Y +C D E+ +NK
Sbjct: 15 VPNKDAKINLLDLNRQQLREFFHNLGEKPFRADQVMKWMY-----HYCCDNFDEMTDINK 69
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQV
Sbjct: 70 VLRGKLKEVAEIRAPDVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQV 127
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL 187
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+
Sbjct: 188 NLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRD 247
Query: 340 WIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PIN+KY + + +R L N +V EYVML VND + A +L L++ P
Sbjct: 248 EIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTP 307
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 CKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMNYGFTTIVRKTRGDDIDAACGQLA 363
>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|429101334|ref|ZP_19163308.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|426287983|emb|CCJ89421.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
Length = 388
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/352 (39%), Positives = 207/352 (58%), Gaps = 14/352 (3%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
K ++ L ++ E++++ ++ +P +A +M W Y D + DE+ +NK +
Sbjct: 18 KSEKINLLDLNRQEMREFFKTLGEKPFRADQVMKWMYHYCSDDF----DEMTDINKVLRG 73
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA+
Sbjct: 74 KLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCAL 131
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVEN 283
C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+ N
Sbjct: 132 ECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTN 191
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ I+P
Sbjct: 192 VVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVP 251
Query: 344 INRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
IN+KY + + +R L N +V EYVML VND + A +L L++ PCKIN
Sbjct: 252 INKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKIN 311
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
LI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 312 LIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|390452128|ref|ZP_10237680.1| radical SAM protein [Nitratireductor aquibiodomus RA22]
gi|389660102|gb|EIM71820.1| radical SAM protein [Nitratireductor aquibiodomus RA22]
Length = 408
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 202/365 (55%), Gaps = 26/365 (7%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFK 166
R L G+S EL + + S QA M LW LY + ++ ++KD +
Sbjct: 22 ADRQSLIGLSRDELAEALLSLDVPERQARMRVRQLWHWLYVRGVSDFS--QMFNISKDLR 79
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSS 221
L E + + S DGT K L + +ETV IP GR T+C+SS
Sbjct: 80 AKLDERFTIARPEIIEEQISKDGTCKWLMRFPARGAGRPVDVETVYIP-EEGRGTLCISS 138
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------------SEVGSIT 267
QVGC + C FC+TG L R+LT EI++Q + AR L +E +T
Sbjct: 139 QVGCTLTCTFCHTGTQKLVRNLTPGEILDQLLVARDRLGDFPDADTPDGAIVPAEGRKVT 198
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N ENV +A I +GL S R++T+STSG+VP++ + E LA
Sbjct: 199 NIVMMGMGEPLYNFENVKQALLIASDGEGLSLSKRRITLSTSGVVPEIYRTGEEIGVMLA 258
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A DE+RN ++PIN+KY L L++ R N ++ FEYVML GVNDS DDA+
Sbjct: 259 ISLHAVRDELRNELVPINKKYPLKELLDACRAYPGLSNARRITFEYVMLKGVNDSLDDAR 318
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
L+ L++GIP KINLI FNP GS + + E++ EF +++ AG +R RG D +A
Sbjct: 319 ELVRLLKGIPAKINLIPFNPWPGSDYECSDWEQIEEFADLVNKAGYASPIRTPRGRDILA 378
Query: 448 ACGQL 452
ACGQL
Sbjct: 379 ACGQL 383
>gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
gi|440757322|ref|ZP_20936510.1| Ribosomal RNA large subunit methyltransferase N [Pantoea
agglomerans 299R]
gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
gi|436428881|gb|ELP26530.1| Ribosomal RNA large subunit methyltransferase N [Pantoea
agglomerans 299R]
Length = 389
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 210/359 (58%), Gaps = 20/359 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---G 160
V+ K ++ L ++ +++++ S +P +A +M W I+ +C D+ E
Sbjct: 15 VVSPKSQKINLLDLNRQQMREFFLSLGEKPFRADQVMKW-------IYHYCCDDFEQMTD 67
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK + L E E RA + + + S+DGT K + D LV ETV IP R T+CVS
Sbjct: 68 INKKLRNRLMELTEIRAPEVAEEMRSTDGTIKWAIRVGDQLV-ETVYIP-EGDRATLCVS 125
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGE
Sbjct: 126 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGE 185
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D+
Sbjct: 186 PLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAANDK 245
Query: 337 VRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ I+PIN+KY + + ++ + N +V EYV+L VNDS DDA L L++
Sbjct: 246 LRDDIVPINKKYNIETFLAAVKRYIAKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLK 305
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 ETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLA 364
>gi|256823058|ref|YP_003147021.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
gi|256796597|gb|ACV27253.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
Length = 374
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 189/326 (57%), Gaps = 11/326 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W +G + + DE+ ++K ++ L + AE + + + S DGT K
Sbjct: 28 FR-AQQVMKWVHQFGVEDF----DEMTNISKVCRERLKDVAEIKGPEVLSVQESKDGTVK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ G +E V IP R R T+CVSSQVGCA+ C FC TG G R+LT AEI+ Q
Sbjct: 83 WALKIPGGQAVEMVFIP-ERHRGTLCVSSQVGCALECTFCSTGYQGFNRNLTTAEIIGQV 141
Query: 253 VFARRLL----SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A R L S+ +TNVV MGMGEPL N + V+K+ +M+ + S R+VT+ST
Sbjct: 142 WLAARYLHGKHKSDERVVTNVVMMGMGEPLANFDPVVKSMQLMMDDLAYGLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN-NY 367
SG+VPQL + ++E + ALA+SL+A D +R+ ++PIN+KY + L+ ++ L N
Sbjct: 202 SGMVPQLDRLIDEVDVALAISLHAPNDALRDVLVPINKKYPIKELMASVHRYLDRSNAAR 261
Query: 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNI 427
K EYVML VND+ AK L L++ PCKINLI FNP + + +T E + F +
Sbjct: 262 KATIEYVMLKDVNDTLQHAKELAELLKNTPCKINLIPFNPFPQANYQTSTQEAIDLFSDY 321
Query: 428 LAGAGCTVFLRLSRGDDQMAACGQLG 453
L G V R +RGDD AACGQL
Sbjct: 322 LIKKGYVVVTRRTRGDDIDAACGQLA 347
>gi|403059493|ref|YP_006647710.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402806819|gb|AFR04457.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 418
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 220/399 (55%), Gaps = 24/399 (6%)
Query: 65 TFLSPVSPTRRPLSTATCSPQIPLATIEDYC-SDAGGGDNINVLPKKGSRVLLKGMSFTE 123
T +S + + S T S Q T+ ++ + A ++ +K + + L +
Sbjct: 9 TVVSETTASNTTASNTTVSEQ----TVSEFSPASADASQSVKASAEKINLLDLNRQQMRD 64
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDE---LEGLNKDFKKMLSEHAEFRALSL 180
L + FR Q +M W I+ +C D+ + +NK F+ L E AE RA +
Sbjct: 65 LFMSMGEKPFRADQ-VMKW-------IYHYCCDDFNQMTDINKVFRSKLQEIAEIRAPEV 116
Query: 181 KDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
D SSDGT K ++ G +ETV IP R T+CVSSQVGCA+ C+FC T + G
Sbjct: 117 VDEQRSSDGTIKWAILVG-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFN 174
Query: 241 RHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQG 296
R+L +EI+ Q A +++ + G ITNVV MGMGEPL N+ NV+ A IM+ + G
Sbjct: 175 RNLRVSEIIGQVWRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFG 234
Query: 297 LHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356
S R+VT+STSG+VP L + + + ALA+SL+A TD++RN IMPIN+KY + +
Sbjct: 235 FGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKYNIETFLSA 294
Query: 357 LREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
+R L N +V EYVML +ND + A +L ++ PCKINLI +NP G+ +
Sbjct: 295 VRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYG 354
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 355 RSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 393
>gi|392547027|ref|ZP_10294164.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
rubra ATCC 29570]
Length = 376
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 198/349 (56%), Gaps = 14/349 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W +G D + D++ +NK + L E RA + +SDGT K
Sbjct: 30 FRADQ-VMKWIYHFGIDNF----DDMSNINKKLRAKLQAECEIRAPEISVRQQASDGTIK 84
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+LD G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+L +EI+ Q
Sbjct: 85 YALVLDGGQEVETVWIP-EKDRATLCVSSQVGCALECTFCSTAQQGFNRNLKVSEIIGQV 143
Query: 253 VFARRLLSSEVGS-----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
+ + G ITNVV MGMGEPL N+ NV+ A +M+ + S R+VT+S
Sbjct: 144 WRVAKDIGLHDGDSTKRPITNVVMMGMGEPLLNINNVVPAMELMMDDWAFGLSKRRVTLS 203
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH-FKNN 366
TSG+VP L + + ALA+SL+A + +R+ ++PIN+KY + + R + K N
Sbjct: 204 TSGVVPALDILKEKIDVALAISLHAPNNPLRDELVPINKKYPIEEFLAACRRYIDGSKAN 263
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
V EYVML GVNDS D A L+ +++G P KINLI FNP G+++ +++ ++ F
Sbjct: 264 KDVTIEYVMLQGVNDSTDHAHELVQVLKGTPSKINLIPFNPFPGNEYGRSSNSRIDRFSK 323
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQTAINA 475
+L AG T +R +RGDD AACGQL G + R+ +K Q NA
Sbjct: 324 VLQAAGLTCIVRRTRGDDIDAACGQL--VGDVVDRTKRLAKKKQLEDNA 370
>gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
Length = 392
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 150/383 (39%), Positives = 215/383 (56%), Gaps = 22/383 (5%)
Query: 77 LSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPG 136
+S T SP + ++ + A + IN+L +R ++ F EL + FR
Sbjct: 1 MSEQTVSPVVAMS--DAIAVAANSNEKINLL--DFNRQQMRAF-FAELGE----KPFRAD 51
Query: 137 QALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFM 196
Q +M W Y D + TD +NK + L AE RA + D SSDGT K +
Sbjct: 52 Q-VMKWMYHYCCDDFNQMTD----INKVLRGKLQAIAEIRAPEVVDEQRSSDGTIKWAIL 106
Query: 197 LDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFAR 256
+D G +ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q A
Sbjct: 107 VD-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAA 164
Query: 257 RLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
+++ + + ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT+STSG+V
Sbjct: 165 KIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVV 224
Query: 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVL 370
P L + + + ALA+SL+A TDE+RN IMPIN+KY + + +R L N +V
Sbjct: 225 PALDKLGDMIDVALAISLHAPTDEIRNEIMPINKKYDIETFLSAVRRYLEKSNANQGRVT 284
Query: 371 FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 430
EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++ F +L
Sbjct: 285 VEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLME 344
Query: 431 AGCTVFLRLSRGDDQMAACGQLG 453
G T +R +RGDD AACGQL
Sbjct: 345 YGFTTIVRKTRGDDIDAACGQLA 367
>gi|225847963|ref|YP_002728126.1| ribosomal RNA large subunit methyltransferase N
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644008|gb|ACN99058.1| radical SAM enzyme, Cfr family [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 353
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 205/344 (59%), Gaps = 11/344 (3%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
LK ++F EL+ +V + + +A + K LY + D++ L+K+ ++ L E E
Sbjct: 4 LKNLNFKELENFVVENGWPKFRAKQIAKWLYNKKV--ESFDQMTDLSKEIRQTLKEKCEI 61
Query: 176 RALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYT 234
+L L S DG+ K L+ L DG IETV+I + T+CVS+QVGCA+ C+FCYT
Sbjct: 62 NSLKLLTYQQSKIDGSIKFLWQLKDGNTIETVLIN-EKNHKTLCVSTQVGCAVGCKFCYT 120
Query: 235 GRMGLKRHLTAAEIVEQAVFARRLL-SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
+ GL R+L AEIV+Q + +R L E I+N+V+MGMGEPL N +NV K+ I H
Sbjct: 121 TKDGLIRNLETAEIVDQYINVQRFLGDEEENRISNIVYMGMGEPLANYDNVKKSVQIFTH 180
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESN---CALAVSLNATTDEVRNWIMPINRKYKL 350
S RK+T+S+SG++ Q+K+ + + LAVSLNA+ R+++MPI++ L
Sbjct: 181 PDMCKLSHRKITISSSGILHQIKRMFEDKDFPQVKLAVSLNASHQSQRSYLMPISQTNTL 240
Query: 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPH 408
L++ LR +L K +++ EYV++ VND+ +DAKRL+ L++ K+NLI FNP+
Sbjct: 241 EDLMDLLR-KLPLKPGWRITLEYVLIKNVNDTVEDAKRLVNLIKKDKHRFKVNLIPFNPY 299
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
GS F + +++ F +L F+R S+G D AACGQL
Sbjct: 300 PGSDFERPEESRVLAFEKVLWDNNIATFIRWSKGRDIDAACGQL 343
>gi|404403282|ref|ZP_10994866.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas fuscovaginae
UPB0736]
Length = 377
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/345 (40%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 5 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKTV 59
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 60 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 118
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI----TNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S SI TNVV MGMGEPL N +NVI A
Sbjct: 119 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPASIDRAITNVVMMGMGEPLLNFDNVIAAM 178
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+M+ + G S R+VT+STSG+VP + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 179 RLMMDDLGYGISKRRVTLSTSGVVPMIDVLAEHIDVSLALSLHAPNDALRNQLVPINKKY 238
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY +L VND + A +I L++ PCKINLI FNP
Sbjct: 239 PLKMLLESCRRYMDTLGEKRVLTVEYTLLKDVNDQVEHAVEMIELLKDTPCKINLIPFNP 298
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 299 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 343
>gi|372489753|ref|YP_005029318.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Dechlorosoma suillum PS]
gi|359356306|gb|AEV27477.1| 23S rRNA m2A2503 methyltransferase [Dechlorosoma suillum PS]
Length = 367
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 194/345 (56%), Gaps = 16/345 (4%)
Query: 124 LQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLK 181
L W + +P +A ++ W +G + TD + K ++ML +A ++
Sbjct: 12 LTAWFAARGEKPFRARQVLRWMHHFGQADFDAMTD----IAKSLREMLKANAVVLPPAIV 67
Query: 182 DILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKR 241
S DGTRK LF + +G +ETV IP + R T+C+S+Q GCA++C FC TG+ G R
Sbjct: 68 SDKLSDDGTRKFLFDVGNGNAVETVFIPED-DRGTLCISTQAGCALDCAFCSTGKQGFNR 126
Query: 242 HLTAAEIVEQAVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHE 294
+L +EI+ Q A R L + I+NVV MGMGEPL N E + A +M+ +
Sbjct: 127 NLAVSEIIGQLWQANRALGVDPRHPDKAERIISNVVLMGMGEPLANFEAAVAALKLMLDD 186
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
S R+VTVSTSGLVP + + +E ALAVSL+A D++R+ ++PIN+KY + L+
Sbjct: 187 NAYGLSRRRVTVSTSGLVPAMDRLRDECPVALAVSLHAPNDKLRDELVPINQKYPIAELM 246
Query: 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
+ L V FEYVML GVNDS A+ L+ + + +PCK NLI FNP GS F
Sbjct: 247 AACQRYLEKAPRDFVTFEYVMLDGVNDSDAHARELLAITRDVPCKFNLIPFNPFPGSPFR 306
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
+ E++ F +IL AG R +RGDD AACGQL G +Q
Sbjct: 307 RSKAERIRRFADILIQAGVVTTTRKTRGDDIDAACGQLA--GQVQ 349
>gi|398795004|ref|ZP_10554946.1| 23S rRNA methyltransferase [Pantoea sp. YR343]
gi|398797058|ref|ZP_10556384.1| 23S rRNA methyltransferase [Pantoea sp. GM01]
gi|398103873|gb|EJL94034.1| 23S rRNA methyltransferase [Pantoea sp. GM01]
gi|398207283|gb|EJM94033.1| 23S rRNA methyltransferase [Pantoea sp. YR343]
Length = 389
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 209/357 (58%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLN 162
V+ K ++ L ++ +++++ +P +A + K +Y +C D+ E +N
Sbjct: 15 VVSPKNEKINLLDLNRQQMREFFLEMGEKPFRADQVMKWMY-----HYCCDDFEQMTDIN 69
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L + AE RA + + + S+DGT K + D LV ETV IP R T+CVSSQ
Sbjct: 70 KVLRGKLMQRAEIRAPEVAEEMRSTDGTIKWAIRVGDQLV-ETVYIP-EADRATLCVSSQ 127
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 128 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKITGQRPITNVVMMGMGEPL 187
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 188 LNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIR 247
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + ++ + N +V EYVML VNDS D+A L L++
Sbjct: 248 DEIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTDNAHELAALLKET 307
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLA 364
>gi|70732281|ref|YP_262037.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Pseudomonas protegens Pf-5]
gi|123748356|sp|Q4K6U6.1|RLMN_PSEF5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|68346580|gb|AAY94186.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas protegens Pf-5]
Length = 382
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEIRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ +PCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKDVPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|422009346|ref|ZP_16356329.1| ribosomal RNA large subunit methyltransferase N [Providencia
rettgeri Dmel1]
gi|414093164|gb|EKT54836.1| ribosomal RNA large subunit methyltransferase N [Providencia
rettgeri Dmel1]
Length = 393
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 211/362 (58%), Gaps = 21/362 (5%)
Query: 104 INVLPKK-GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE- 159
I+V P+K + L ++ +++++ +P +A +M W I+ +C D+ +
Sbjct: 16 ISVTPEKTNQKTNLLDLNRKQMREFFAQMGEKPFRADQVMKW-------IYHYCYDDFDQ 68
Query: 160 --GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
+NK + L E AE RA + D SSDGT K + D LV ETV IP R T+
Sbjct: 69 MTDINKVLRAKLKEVAEIRAPEVADEQRSSDGTIKWAIKVGDQLV-ETVYIP-EADRATL 126
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMG 273
CVSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MG
Sbjct: 127 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMG 186
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A
Sbjct: 187 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAP 246
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNY--KVLFEYVMLAGVNDSFDDAKRLIG 391
TD++R+ I+PIN+KY + + ++ L N +V EYVML VNDS + A +L
Sbjct: 247 TDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQLAE 306
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
++ P KINLI +NP G+ + +++ ++ F +L G G T +R +RGDD AACGQ
Sbjct: 307 CLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTTIVRKTRGDDIDAACGQ 366
Query: 452 LG 453
L
Sbjct: 367 LA 368
>gi|218563299|ref|YP_002345079.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
gi|403056421|ref|YP_006633826.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NCTC 11168-BN148]
gi|415733959|ref|ZP_11474423.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|123042659|sp|Q0P7R8.1|RLMN_CAMJE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|112361006|emb|CAL35807.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|315926640|gb|EFV06020.1| radical SAM superfamily protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|401782073|emb|CCK67784.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NCTC 11168-BN148]
Length = 356
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+ + F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELARNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|375106264|ref|ZP_09752525.1| 23S rRNA m2A2503 methyltransferase [Burkholderiales bacterium
JOSHI_001]
gi|374666995|gb|EHR71780.1| 23S rRNA m2A2503 methyltransferase [Burkholderiales bacterium
JOSHI_001]
Length = 377
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/330 (42%), Positives = 187/330 (56%), Gaps = 16/330 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W G ++ TD L K ++ L++ AE R L++ TS+DGT K
Sbjct: 26 FRATQ-LFRWIHQKGARDFSQMTD----LAKGLREGLADLAEVRPLAIVSEHTSADGTVK 80
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
LF + G +ETV IP R T+C+SSQ GCA+ C+FC TG G R+L+ EI+ Q
Sbjct: 81 WLFDVGGGNAVETVFIP-EDDRGTLCISSQAGCAVGCRFCSTGHQGFSRNLSTGEIIAQL 139
Query: 253 VFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A L GS I+NVV MGMGEPL N VI A M+ + G S R+VTVST
Sbjct: 140 WHAEHALRERFGSTERVISNVVMMGMGEPLQNYAAVIPALRTMLDDHGYGLSRRRVTVST 199
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368
SG+V ++ +E ALAVSL+A TDE+RN ++P+N+K + L++ L
Sbjct: 200 SGMVAKIDTLRDECPVALAVSLHAPTDELRNELVPLNKKDGIVALMQACERYLSAAPRDF 259
Query: 369 VLFEYVMLAGVNDSFDDAKRLIGLVQG------IPCKINLISFNPHCGSQFTPTTDEKMI 422
+ FEY ML GVND+ A++L+ LVQG +PCK NLI FNP S T ++ E++
Sbjct: 260 ITFEYCMLDGVNDTPAQARQLLDLVQGRAGAPRVPCKFNLIPFNPFPASGLTRSSPERVA 319
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F +L G +R +RGDD AACGQL
Sbjct: 320 AFAKVLQDGGVVTTIRKTRGDDIAAACGQL 349
>gi|283956169|ref|ZP_06373654.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
1336]
gi|283792323|gb|EFC31107.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
1336]
Length = 356
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|205829851|sp|Q82XV4.2|RLMN_NITEU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 379
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 193/358 (53%), Gaps = 36/358 (10%)
Query: 122 TELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD-----ELEGLNKDFKKMLSEHAEFR 176
TEL ++ +P +A L + W H + E+ L K F+ L E A +
Sbjct: 10 TELVRFCGEMGEKPYRARQLLR-------WVHQSGKTDFMEMSDLAKGFRHKLMECAVVQ 62
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
+ T+ DGTRK L G +E V IP R T+CVSSQVGCA+ C FC TGR
Sbjct: 63 LPEIVSDHTAGDGTRKWLLSTGAGNAVEMVFIP-EPSRGTLCVSSQVGCALACSFCSTGR 121
Query: 237 MGLKRHLTAAEIVEQAVFARRLLSSEVGS---------------------ITNVVFMGMG 275
G R+L+ AEI+ Q +A RLL E GS +TNVV MGMG
Sbjct: 122 QGFNRNLSVAEIIGQLWWANRLL--EAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMG 179
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N EN++ A ++M+ + S R+VTVSTSGLVP L + ALAVSL+A D
Sbjct: 180 EPLANFENLVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPND 239
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++PIN+KY + L+ L + FEYVML GVNDS A+ L+ LV+
Sbjct: 240 ALRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRN 299
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+PCK+NLI FN GS + + E + FR++L AG +R +RGDD AACGQL
Sbjct: 300 VPCKLNLIPFNAFSGSGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQLA 357
>gi|330807644|ref|YP_004352106.1| hypothetical protein PSEBR_a933 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378948956|ref|YP_005206444.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens F113]
gi|423695452|ref|ZP_17669942.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens
Q8r1-96]
gi|327375752|gb|AEA67102.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359758970|gb|AEV61049.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens F113]
gi|388009256|gb|EIK70507.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens
Q8r1-96]
Length = 382
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEIRGPEVVSQDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVSAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|148251858|ref|YP_001236443.1| pyruvate formate lyase activating enzyme 2 (yfgB) [Bradyrhizobium
sp. BTAi1]
gi|205829672|sp|A5E8P3.1|RLMN_BRASB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146404031|gb|ABQ32537.1| 23S rRNA m(2)A-2503 methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 403
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 190/330 (57%), Gaps = 19/330 (5%)
Query: 137 QALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFM 196
Q L W G A DE+ ++KD + L+E + S+DGTRK L
Sbjct: 57 QQLWHWIYFRG----ARSFDEMSSVSKDTRTALAERFTVDRPEVVAEQISNDGTRKWLLR 112
Query: 197 LDDG------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
L G +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV
Sbjct: 113 LPSGDDLQKAHEVECVYIP-ETDRGTLCVSSQVGCTLNCAFCHTGTQRLVRNLTAGEIVG 171
Query: 251 QAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
Q + AR L+ ITN+V MGMGEPL+N + V A I+ +G+ S R
Sbjct: 172 QVMVARDRLNDWADRETPHGNRLITNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGISRR 231
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
++T+STSG+VP +K+ E LA+SL+A DE+R+ ++P+NRKY + L++ R+
Sbjct: 232 RITLSTSGVVPNIKRAGEEIGVMLAISLHAVRDELRDELVPLNRKYPIAELLQACRDYPG 291
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
N ++ FEYVML GVNDS DDA+ L+ L++GIP KINLI FNP GS + + E++
Sbjct: 292 ASNARRITFEYVMLKGVNDSLDDARLLVKLLKGIPAKINLIPFNPWPGSAYECSDWEQIE 351
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + AG + +R RG D +AACGQL
Sbjct: 352 KFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|424862911|ref|ZP_18286824.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86A]
gi|400757532|gb|EJP71743.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86A]
Length = 359
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/341 (39%), Positives = 202/341 (59%), Gaps = 11/341 (3%)
Query: 116 LKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G S L+ + + ++R Q L W G ++ TD LNKD + L+ H
Sbjct: 7 LLGYSLESLKDFFTDIGEQSYRAKQVLK-WIHQKGVLDFSEMTD----LNKDLRNKLNNH 61
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
A + +++ S++GT+K L LD G +IE V+IP + R T+C+SSQ GCA+ C FC
Sbjct: 62 AFIKPPQIEEEFISNEGTKKYLLKLDSGSMIEMVIIPEGK-RRTLCISSQAGCALACTFC 120
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292
TG G ++L ++EI+ Q A ITNVVFMGMGEPL N + VI++A IM
Sbjct: 121 ATGAQGFDQNLNSSEIIGQLWLAN-FNKKNNKLITNVVFMGMGEPLLNFDAVIESAKIMK 179
Query: 293 HEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGL 352
+ G S +++T+ST+G+VP +K+ N + +LA+SL+A+ D +R+ I+PIN+KY +
Sbjct: 180 DQLGYGLSRKRITISTAGIVPNIKKLNNYVDVSLAISLHASNDVLRDEIVPINKKYPIEK 239
Query: 353 LIETLREELHFKNNYK-VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
L+ ++ L +N K V EY+++ VNDS +DAK L+ L+ +PCKINLI FN GS
Sbjct: 240 LLNACQDYLGKENKRKHVTIEYILIKNVNDSLEDAKGLVKLLSKLPCKINLIPFNSFNGS 299
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ ++ + +F++ L G LR +RGD AACGQL
Sbjct: 300 NYERPCNKTINDFKSFLINKGFIATLRTTRGDGVDAACGQL 340
>gi|440286596|ref|YP_007339361.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440046118|gb|AGB77176.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 388
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 210/359 (58%), Gaps = 16/359 (4%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEG 160
I +P K ++ L ++ +++++ + +P +A + K +Y +C+D ++
Sbjct: 12 IPAVPNKDGKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCSDNFDDMTD 66
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVS
Sbjct: 67 INKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVS 124
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGE
Sbjct: 125 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGE 184
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE
Sbjct: 185 PLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDE 244
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 245 IRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLK 304
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 305 DTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|365971621|ref|YP_004953182.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
gi|365750534|gb|AEW74761.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
Length = 388
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 206/358 (57%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + TD +
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTD----I 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + S+DGT K + D V ETV IP R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSADGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 246 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|398965245|ref|ZP_10680872.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM30]
gi|398147360|gb|EJM36070.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM30]
Length = 382
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI----TNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S +I TNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKDIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQL 348
>gi|407975494|ref|ZP_11156399.1| radical SAM protein [Nitratireductor indicus C115]
gi|407429122|gb|EKF41801.1| radical SAM protein [Nitratireductor indicus C115]
Length = 408
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 202/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G++ EL + + + QA M LW LY + ++ ++KD + L E
Sbjct: 27 LIGLTREELAEALLTVGVPERQARMRVRQLWHWLYVRGVSDFT--QMFNISKDLRAALDE 84
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
+ + S DGTRK L + +ETV IP GR T+C+SSQVGC
Sbjct: 85 TFTIARPEIVEEQISEDGTRKWLMRFPPRGAGRPVEVETVYIP-EEGRGTLCISSQVGCT 143
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------------SEVGSITNVVFM 272
+ C FC+TG + R+LT+ EI++Q + AR L +E +TN+V M
Sbjct: 144 LTCSFCHTGTQKMVRNLTSGEILDQLLVARDRLGDFPDADTPDGAIVPAEGRKVTNIVMM 203
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N ENV KA + GL S R++T+STSG+VP++ + E LA+SL+A
Sbjct: 204 GMGEPLYNFENVKKALLVASDGDGLSLSKRRITLSTSGVVPEIYRTGEEIGVMLAISLHA 263
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
D++RN ++PIN+KY L L++ R N ++ FEYVML GVNDS +DA+ L+ L
Sbjct: 264 VRDDLRNELVPINKKYPLKELLDACRAYPGLSNARRITFEYVMLKGVNDSLEDARELVRL 323
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++GIP KINLI FNP GS + + E++ EF +++ AG +R RG D +AACGQL
Sbjct: 324 LKGIPAKINLIPFNPWPGSAYECSDWEQIEEFADVVNRAGYASPIRTPRGRDILAACGQL 383
>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
amazonensis SB2B]
gi|205829877|sp|A1S866.1|RLMN_SHEAM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 373
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 195/342 (57%), Gaps = 14/342 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W +G + T+ +NK + L+ E A + SSDGT K
Sbjct: 28 FR-AQQIMQWIYHFGVSDFEQMTN----INKAMRAKLAARCEIVAPEITSYQKSSDGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAINVGQGQEVETVYIPED-DRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L E G I+NVV MGMGEPL N+ NV+ A NIM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFQKETGERPISNVVMMGMGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + + ALAVS++A DE+R+ ++PIN+KY L + +R L N
Sbjct: 202 SGVVPALDKLGDVIDVALAVSIHAPNDELRDVLVPINKKYPLQEFLAAIRRYLEKSNANR 261
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS D A L L++ PCKINLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTLEYVMLDHINDSTDQAHELAKLMKDTPCKINLIPFNPYPGSPYGRSSNSRIDRFAK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYDLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>gi|308187773|ref|YP_003931904.1| hypothetical protein Pvag_2282 [Pantoea vagans C9-1]
gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
Length = 389
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 210/359 (58%), Gaps = 20/359 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---G 160
V+ K ++ L ++ +++++ S +P +A +M W I+ +C D+ E
Sbjct: 15 VVSPKSQKINLLDLNRQQMREFFLSLGEKPFRADQVMKW-------IYHYCCDDFEQMTD 67
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK + L E E RA + + + S+DGT K + D LV ETV IP R T+CVS
Sbjct: 68 INKKLRNRLMELTEIRAPEVAEEMRSTDGTIKWAIRVGDQLV-ETVYIP-EGDRATLCVS 125
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGE
Sbjct: 126 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGE 185
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D+
Sbjct: 186 PLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDK 245
Query: 337 VRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ I+PIN+KY + + ++ + N +V EYV+L VNDS DDA L L++
Sbjct: 246 LRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLK 305
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 ETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLA 364
>gi|30248171|ref|NP_840241.1| hypothetical protein NE0145 [Nitrosomonas europaea ATCC 19718]
gi|30180056|emb|CAD84056.1| Conserved hypothetical protein 48 [Nitrosomonas europaea ATCC
19718]
Length = 361
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/329 (42%), Positives = 182/329 (55%), Gaps = 29/329 (8%)
Query: 151 WAHCTD-----ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H + E+ L K F+ L E A + + T+ DGTRK L G +E
Sbjct: 14 WVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRKWLLSTGAGNAVEM 73
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS 265
V IP R T+CVSSQVGCA+ C FC TGR G R+L+ AEI+ Q +A RLL E GS
Sbjct: 74 VFIP-EPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLWWANRLL--EAGS 130
Query: 266 ---------------------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
+TNVV MGMGEPL N EN++ A ++M+ + S R+V
Sbjct: 131 HDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDLMLSDDAYGLSRRRV 190
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
TVSTSGLVP L + ALAVSL+A D +R+ ++PIN+KY + L+ L
Sbjct: 191 TVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLLAACERYLPAA 250
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEYVML GVNDS A+ L+ LV+ +PCK+NLI FN GS + + E + F
Sbjct: 251 PRDFITFEYVMLKGVNDSVALARELVQLVRNVPCKLNLIPFNAFSGSGYERSGAEAIGNF 310
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
R++L AG +R +RGDD AACGQL
Sbjct: 311 RDVLMQAGIVTTVRKTRGDDIAAACGQLA 339
>gi|336246651|ref|YP_004590361.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
aerogenes KCTC 2190]
gi|444355373|ref|YP_007391517.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|334732707|gb|AEG95082.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
aerogenes KCTC 2190]
gi|443906203|emb|CCG33977.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 388
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 209/356 (58%), Gaps = 16/356 (4%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNK 163
+P K +++ L ++ +++++ ++ +P +A + K +Y DD DE+ +NK
Sbjct: 15 VPNKDAKINLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCCDDF-----DEMTDINK 69
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L E AE RA + + SSDGT K + D V ETV IP R T+CVSSQV
Sbjct: 70 VLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSSQV 127
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEPL
Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMGMGEPLL 187
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+
Sbjct: 188 NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRD 247
Query: 340 WIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PIN+KY + + ++R + N +V EYVML VND + A L L++ P
Sbjct: 248 EIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKDTP 307
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 CKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|253988864|ref|YP_003040220.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 392
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 207/356 (58%), Gaps = 20/356 (5%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNK 163
KK ++ L + +++Q+ +P +A +M W I+ +C D+ E +NK
Sbjct: 21 KKSGKINLLDLDRKQMRQFFVDMGEKPFRADQVMKW-------IYHYCYDDFEQMTDINK 73
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L + AE RA + + S+DGT K + D V ETV IP + R T+CVSSQV
Sbjct: 74 TLRAKLQQVAEIRAPEVAEEQRSADGTIKWAISVGDQQV-ETVYIPED-DRATLCVSSQV 131
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MGMGEPL
Sbjct: 132 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMGMGEPLL 191
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+
Sbjct: 192 NLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRD 251
Query: 340 WIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PINRKY + + +R L N +V EYVML +NDS + A +L ++ P
Sbjct: 252 DIVPINRKYNIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDSVEQAHQLAECLKDTP 311
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G G T +R +RGDD AACGQL
Sbjct: 312 SKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMGYGFTTIVRKTRGDDIDAACGQLA 367
>gi|426407849|ref|YP_007027948.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
UW4]
gi|426266066|gb|AFY18143.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
UW4]
Length = 382
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|443468238|ref|ZP_21058468.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
pseudoalcaligenes KF707]
gi|442897355|gb|ELS24297.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
pseudoalcaligenes KF707]
Length = 375
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 199/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ +L+ + S FR GQ +M W +G D + D + + K + L
Sbjct: 3 LLGLTQPQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNIGKALRDKLKAS 57
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP GR T+CVSSQ GCA++C FC
Sbjct: 58 AEIRGPEVVSQDISSDGTRKWVVRVASGSCVETVYIP-QGGRGTLCVSSQAGCALDCSFC 116
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVIKAA 288
TG+ G LTAAE++ Q A + + +ITNVV MGMGEPL N +NV+ A
Sbjct: 117 STGKQGFNSDLTAAEVIGQVWIANKSFGTIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 176
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
NIM+ + G S RKVT+STSG+ P + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 177 NIMMDDLGYGISKRKVTLSTSGVAPMIDKLGEVIDVSLALSLHAPNDPLRNQLVPINKKY 236
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L ++++ R + +VL EY +L VND + A ++I L++ PCKINLI FNP
Sbjct: 237 PLSVVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAAQMIELLKEFPCKINLIPFNP 296
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RGDD AACGQL
Sbjct: 297 FPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDAACGQL 341
>gi|372276915|ref|ZP_09512951.1| ribosomal RNA large subunit methyltransferase N [Pantoea sp.
SL1_M5]
gi|390435944|ref|ZP_10224482.1| ribosomal RNA large subunit methyltransferase N [Pantoea
agglomerans IG1]
Length = 389
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 210/359 (58%), Gaps = 20/359 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---G 160
V+ K ++ L ++ +++++ S +P +A +M W I+ +C D+ E
Sbjct: 15 VVSPKSQKINLLDLNRQQMREFFLSLGEKPFRADQVMKW-------IYHYCCDDFEQMTD 67
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK + L E E RA + + + S+DGT K + D LV ETV IP R T+CVS
Sbjct: 68 INKKLRNRLMELTEIRAPEVAEEMRSTDGTIKWAIRVGDQLV-ETVYIP-EGDRATLCVS 125
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGE
Sbjct: 126 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGE 185
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D+
Sbjct: 186 PLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDK 245
Query: 337 VRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ I+PIN+KY + + ++ + N +V EYV+L VNDS DDA L L++
Sbjct: 246 LRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLK 305
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 ETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLA 364
>gi|440231978|ref|YP_007345771.1| 23S rRNA m(2)A-2503 methyltransferase [Serratia marcescens FGI94]
gi|440053683|gb|AGB83586.1| 23S rRNA m(2)A-2503 methyltransferase [Serratia marcescens FGI94]
Length = 398
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/354 (39%), Positives = 208/354 (58%), Gaps = 20/354 (5%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNKDF 165
+++ L ++ +++++ S +P +A +M W I+ +C D+ E +NK
Sbjct: 29 AAKINLLDLNRQQMREFFASLGEKPFRADQVMKW-------IYHYCCDDFEQMTDINKVL 81
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGC 225
+ L + AE RA + + SSDGT K + D V ETV IP R T+CVSSQVGC
Sbjct: 82 RGKLQQIAEIRAPEVAEEQRSSDGTIKWAIKVGDQQV-ETVYIP-EADRATLCVSSQVGC 139
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNV 281
A+ C+FC T + G R+L +EI+ Q A +++ ++ + ITNVV MGMGEPL N+
Sbjct: 140 ALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGQRPITNVVMMGMGEPLLNL 199
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D VR+ I
Sbjct: 200 TNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAVRDEI 259
Query: 342 MPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
+PINRKY + + +R L N +V EYVML VNDS DDA +L +++ PCK
Sbjct: 260 VPINRKYNIEAFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSTDDAHQLAEVLKDTPCK 319
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
INLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 320 INLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|77460825|ref|YP_350332.1| hypothetical protein Pfl01_4604 [Pseudomonas fluorescens Pf0-1]
gi|123772061|sp|Q3K7B3.1|RLMN_PSEPF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77384828|gb|ABA76341.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 382
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI----TNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S +I TNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKDIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQL 348
>gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
ANA-3]
gi|205829885|sp|A0KUJ2.1|RLMN_SHESA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3]
Length = 373
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 200/342 (58%), Gaps = 14/342 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 28 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISSYQKSTDGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAIHVGEGQEVETVYIPED-DRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + E G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFAKETGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N
Sbjct: 202 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 261
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>gi|398864931|ref|ZP_10620459.1| 23S rRNA methyltransferase [Pseudomonas sp. GM78]
gi|398244323|gb|EJN29880.1| 23S rRNA methyltransferase [Pseudomonas sp. GM78]
Length = 380
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|392552324|ref|ZP_10299461.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
spongiae UST010723-006]
Length = 377
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 190/325 (58%), Gaps = 11/325 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR G +M W +G D + DE+ +NK K L E +A + +SDGT K
Sbjct: 30 FR-GDQVMKWMYHFGIDNF----DEMSNINKKLKAKLHAECEIKAPEISVKQVASDGTIK 84
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+L+ G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+L +EI+ Q
Sbjct: 85 YALVLEGGQEVETVWIP-EKDRATLCVSSQVGCALECTFCSTAQQGFNRNLKVSEIIGQV 143
Query: 253 VFARRLL----SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
+ + S +TNVV MGMGEPL N+ NV+ A +M+ + S R+VT+ST
Sbjct: 144 WRVAKDIGLHGDSTKRPVTNVVMMGMGEPLLNLNNVVPAMELMMDDWAFGLSKRRVTLST 203
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH-FKNNY 367
SG+VP L + + ALA+SL+A +E+R+ ++PIN+KY + + R + K N
Sbjct: 204 SGVVPALDILKEKIDVALAISLHAPNNELRDVLVPINKKYPIEEFLAACRRYIDGSKANK 263
Query: 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNI 427
+ EYVML GVNDS D A L+ +++G P KINLI FNP G+++ +++ ++ F +
Sbjct: 264 DITIEYVMLQGVNDSTDHAHELVKVLKGTPSKINLIPFNPFPGNEYGRSSNSRIDRFSKV 323
Query: 428 LAGAGCTVFLRLSRGDDQMAACGQL 452
L AG T +R +RGDD AACGQL
Sbjct: 324 LQAAGLTCIVRRTRGDDIDAACGQL 348
>gi|86152381|ref|ZP_01070591.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
260.94]
gi|315125097|ref|YP_004067101.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85840678|gb|EAQ57930.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
260.94]
gi|315018819|gb|ADT66912.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 356
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|430760187|ref|YP_007216044.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009811|gb|AGA32563.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 377
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 193/334 (57%), Gaps = 11/334 (3%)
Query: 123 ELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKD 182
+ + W FR Q L+ W G +A TD L+K ++ L A +
Sbjct: 22 QFESW-GERGFRATQ-LVKWIHQRGVTDFAAMTD----LSKTLREQLGLLAAVELPEIAL 75
Query: 183 ILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
S DGT K + L DG IETV IP + R T+C+SSQVGCA++C FC T + G R+
Sbjct: 76 ERRSDDGTVKWVLRLADGNAIETVYIPED-DRGTLCISSQVGCALDCTFCSTAQQGFNRN 134
Query: 243 LTAAEIVEQAVFARRLLSSEVG---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
L+A EI+ Q A + + G ++TNVVFMGMGEPL N++ V+ A ++M+ +
Sbjct: 135 LSAHEIIGQLWLANQRVPVPEGRSRAVTNVVFMGMGEPLANLDAVVDAIDLMLDDNAYGL 194
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R+VTVSTSGLVP L + ++ ALAVSL+A D +RN ++PINRKY + L+ R
Sbjct: 195 SKRRVTVSTSGLVPALDRLGAATDVALAVSLHAPNDALRNRLVPINRKYPIHELLNACRR 254
Query: 360 ELH-FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
+++V FEYV+LAG+ND A+ L+ L++ +PCKINLI FNP GS F +
Sbjct: 255 YTRDGARHHRVTFEYVLLAGINDQPRHARELMALLRDVPCKINLIPFNPFPGSPFVRPSS 314
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F +L AG +R +RGDD AACGQL
Sbjct: 315 NAVRVFEKLLDDAGFVTIVRRTRGDDIDAACGQL 348
>gi|395225716|ref|ZP_10404232.1| 23S rRNA m2A2503 methyltransferase [Thiovulum sp. ES]
gi|394446116|gb|EJF06961.1| 23S rRNA m2A2503 methyltransferase [Thiovulum sp. ES]
Length = 355
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 134/350 (38%), Positives = 200/350 (57%), Gaps = 24/350 (6%)
Query: 118 GMSFTELQQWVRSHAFRPGQ--ALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
G+S E+Q+ V P + A ++ +Y + + DE+ ++K +K LSE
Sbjct: 6 GLSLGEVQKLV------PKKFVAKQIYNWIYHN--YKSSFDEMGNISKALRKELSEKFSI 57
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIP------------CNRGRTTVCVSSQV 223
+ + S DGT K LF L+DG +ETV+I + R T+CVS+QV
Sbjct: 58 HTMEIAKKEESLDGTIKYLFRLEDGRTVETVLIKMRDEVFNEDGDILQQARYTICVSTQV 117
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVEN 283
GC + C FC T + G R L+ AEIVEQ + +R E NVV+MGMGEPL N +
Sbjct: 118 GCKVGCSFCSTAKGGFVRDLSTAEIVEQVLAIKREQEIEYSRKGNVVYMGMGEPLDNFTS 177
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN-ESNCALAVSLNATTDEVRNWIM 342
++ A I+ E GL SPR+ TVSTSG+ ++ + + + +A+SL+A DEVR ++
Sbjct: 178 LVNAIAILKDENGLSISPRRQTVSTSGISTKIDKLGSLDLGVHIAISLHAVDDEVRTELI 237
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
P+N+ + + +I ++ + N +V+FEY+M+ GVNDS + AK+LI L++GI KINL
Sbjct: 238 PMNKAFNIQSIISAVK-RFPYDNRKRVMFEYLMIRGVNDSLESAKKLIKLLEGIKAKINL 296
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNPH GS++ T+E M +F + L G +R SRG + AACGQL
Sbjct: 297 IYFNPHDGSEYERPTEENMEKFADYLNRRGLLATIRASRGVEISAACGQL 346
>gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134]
gi|123732898|sp|Q46ZI0.1|RLMN_CUPPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|72119190|gb|AAZ61453.1| 23S rRNA m(2)A-2503 methyltransferase [Ralstonia eutropha JMP134]
Length = 384
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 187/328 (57%), Gaps = 13/328 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W +G A D + L K ++ L+ AE R+ + S+DGTRK
Sbjct: 27 FRARQ-LQRWIHQFG----ASRFDAMSDLAKSLREKLATRAEIRSPAAITDNLSADGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + +G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+LT EI+ Q
Sbjct: 82 WLLDVGNGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEIIGQL 140
Query: 253 VFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
A + ++G I+NVV MGMGEPL N + V+ A +M+ + S R+VT
Sbjct: 141 WMAEFAMREQLGRGPKDDRVISNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVT 200
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 201 LSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFAP 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+ FEY ML GVND + A+ L+ LV +PCK NLI FNP S + ++++ F
Sbjct: 261 RDFITFEYCMLDGVNDGVEHARELLKLVADVPCKFNLIPFNPFPESGLKRSNNDQIRRFA 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 321 QVLMDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|398978326|ref|ZP_10687701.1| 23S rRNA methyltransferase [Pseudomonas sp. GM25]
gi|398137126|gb|EJM26192.1| 23S rRNA methyltransferase [Pseudomonas sp. GM25]
Length = 382
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI----TNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S +I TNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSELGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQL 348
>gi|291618414|ref|YP_003521156.1| hypothetical protein PANA_2861 [Pantoea ananatis LMG 20103]
gi|378766152|ref|YP_005194613.1| ribosomal RNA large subunit methyltransferase N [Pantoea ananatis
LMG 5342]
gi|386016734|ref|YP_005935024.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355]
gi|386078386|ref|YP_005991911.1| ribosomal RNA large subunit methyltransferase N YfgB [Pantoea
ananatis PA13]
gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103]
gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355]
gi|354987567|gb|AER31691.1| ribosomal RNA large subunit methyltransferase N YfgB [Pantoea
ananatis PA13]
gi|365185626|emb|CCF08576.1| ribosomal RNA large subunit methyltransferase N [Pantoea ananatis
LMG 5342]
Length = 389
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 212/361 (58%), Gaps = 21/361 (5%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE-- 159
I+V PK ++ L ++ +++++ S +P +A +M W I+ +C D+ E
Sbjct: 14 ISVSPK-SQKINLLDLNRQQMREFFVSLGEKPFRADQVMKW-------IYHYCCDDFEQM 65
Query: 160 -GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVC 218
+NK + L E E RA + + + S+DGT K + D LV ETV IP R T+C
Sbjct: 66 TDINKKLRNRLMELTEIRAPEVAEEMRSTDGTIKWAIRVGDQLV-ETVYIP-EGDRATLC 123
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGM 274
VSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGM
Sbjct: 124 VSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGM 183
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATT 334
GEPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A
Sbjct: 184 GEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPN 243
Query: 335 DEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
D++R+ I+PIN+KY + + ++ + N +V EYV+L VNDS DDA L L
Sbjct: 244 DKLRDDIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAAL 303
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 304 LKETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQL 363
Query: 453 G 453
Sbjct: 364 A 364
>gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
2336]
gi|205829771|sp|B0UWR0.1|RLMN_HAES2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829859|sp|Q0I3U8.2|RLMN_HAES1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336]
Length = 372
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 196/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + H T+ +NK ++ L AE +A + S+DGT K
Sbjct: 27 FRADQ-LVKWIYHFGEDNFDHMTN----INKKLREKLKTVAEIKAPEIAVEQRSADGTIK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C FC T + G R+LT +EI+ Q
Sbjct: 82 WAMQVGDQQV-ETVYIP-ETDRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQV 139
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 140 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 199
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + ALA+SL+A DE+RN I+PIN+KY + +L+E++ L+ N+
Sbjct: 200 SGVVPALDKLSEMIDVALAISLHAPNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANH 259
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 260 GKVTIEYVMLDHINDGTEHAHQLAEVLKNTPCKINLIPWNPFPDAPYAKSSNTRIDRFQK 319
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV LR +RGDD AACGQL
Sbjct: 320 TLMEYGFTVILRKTRGDDIDAACGQLA 346
>gi|300717954|ref|YP_003742757.1| Fe-S protein [Erwinia billingiae Eb661]
gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661]
Length = 389
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 207/353 (58%), Gaps = 16/353 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFK 166
K ++ L ++ +++++ S +P +A + K +Y DD DE+ +NK F+
Sbjct: 19 KTEKINLLDLNRQQMREFFASMGEKPFRADQVMKWMYHYCCDDF-----DEMTDINKVFR 73
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L E AE RA + S+DGT K + G +ETV IP + R T+CVSSQVGCA
Sbjct: 74 NRLKEVAEIRAPEVATEQRSTDGTIKWAITVG-GQQVETVYIP-EKDRATLCVSSQVGCA 131
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEPLHNVE 282
+ C+FC T + G R+L +EI+ Q A +++ + G+ ITNVV MGMGEPL N+
Sbjct: 132 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGASKITGTRPITNVVMMGMGEPLLNLN 191
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+ I+
Sbjct: 192 NVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIV 251
Query: 343 PINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
P+N+KY + + ++ + N +V EYVML VNDS D+A L L++ PCKI
Sbjct: 252 PVNKKYNIETFLASVSRYIAKSNANQGRVTIEYVMLDHVNDSTDNAHELAALLKNTPCKI 311
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 312 NLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLA 364
>gi|424924744|ref|ZP_18348105.1| radical SAM enzyme [Pseudomonas fluorescens R124]
gi|404305904|gb|EJZ59866.1| radical SAM enzyme [Pseudomonas fluorescens R124]
Length = 382
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI----TNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S +I TNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKDIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQL 348
>gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430]
gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946]
gi|428786010|ref|ZP_19003493.1| UPF0063 protein yfgB [Erwinia amylovora ACW56400]
gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430]
gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158]
gi|426275405|gb|EKV53140.1| UPF0063 protein yfgB [Erwinia amylovora ACW56400]
Length = 388
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/359 (38%), Positives = 211/359 (58%), Gaps = 21/359 (5%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTD---ELEG 160
+ PKK ++ L ++ +++++ S +P +A +M W I+ +C D E+
Sbjct: 15 ITPKK-EKINLLDLNRQQMREFFASLGEKPFRADQVMKW-------IYHYCCDDFNEMTD 66
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK F+ L E AE RA + + S+DGT K + G +ETV IP + R T+CVS
Sbjct: 67 INKVFRNRLQELAEIRAPEVAEEQRSADGTIKWAIQVG-GQQVETVYIP-EKDRATLCVS 124
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGE
Sbjct: 125 SQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGE 184
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D
Sbjct: 185 PLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDT 244
Query: 337 VRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+R+ I+PIN+KY + + ++ + N +V EYVML +NDS D+A L L++
Sbjct: 245 IRDEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHELAALLK 304
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 305 DTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|254490112|ref|ZP_05103304.1| radical SAM enzyme, Cfr family [Methylophaga thiooxidans DMS010]
gi|224464700|gb|EEF80957.1| radical SAM enzyme, Cfr family [Methylophaga thiooxydans DMS010]
Length = 367
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 202/349 (57%), Gaps = 17/349 (4%)
Query: 116 LKGMS--FTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA 173
LKG+ F EL + FR Q L+ W Y +A E+ L+K ++ L +
Sbjct: 12 LKGLEAFFVELGE----KPFRARQ-LLQWIHKYRVVDFA----EMTNLSKALREKLQAVS 62
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
+ R + S+DGTRK + L G IETV IP GR T+CVSSQVGCA+ C FC
Sbjct: 63 DIRLPEVLHEHISTDGTRKWIIKLSCGNAIETVFIP-EGGRGTLCVSSQVGCALTCTFCS 121
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANI 290
T + G R+L AAEI+ Q A L + +TNVV MGMGEPL N NV+ A N+
Sbjct: 122 TAQQGFNRNLDAAEIIAQLWIANEALGKDPKGNRVVTNVVMMGMGEPLANYNNVVTAMNL 181
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350
M + G S R++T+STSG+VP + + + + +LA+SL+A DE+R+ I+PIN+KY +
Sbjct: 182 MRDDYGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAISLHAANDELRDQIVPINQKYPI 241
Query: 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
L+ + + + + EYVML G+NDS DAK L+ +++ +P KIN+I FNP G
Sbjct: 242 KELLAACKRYVVGQQRRHITVEYVMLDGINDSMQDAKDLVRILKDLPTKINMIPFNPFPG 301
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
+ +T ++ ++ F+N L G +R +RGDD +AACGQL G +Q
Sbjct: 302 TDYTCSSRNQIKRFQNYLIEQGMVATVRKTRGDDIVAACGQLA--GEVQ 348
>gi|398952438|ref|ZP_10674786.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM33]
gi|398155192|gb|EJM43646.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM33]
Length = 382
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQLEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|311105357|ref|YP_003978210.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
gi|310760046|gb|ADP15495.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
Length = 384
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 198/358 (55%), Gaps = 21/358 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKML 169
R+ L G+ + L + V +P +A L W G D + TD L +DF+ L
Sbjct: 5 ERINLLGLDGSALSELVGKWGGKPFRARQLQRWMHQRGADSFDAMTD----LARDFRGQL 60
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
++H AL + S+DGTRK LF + G IETV IP + R T+C+SSQ GC +NC
Sbjct: 61 AQHCRIEALPVNIEQRSTDGTRKWLFDVGQGNAIETVFIPED-DRGTLCISSQAGCVVNC 119
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------------ITNVVFMGMG 275
+FC TG G R+L +EI+ Q +A+R+L +++G+ I+NVV MGMG
Sbjct: 120 RFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVISNVVMMGMG 179
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + V+ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A D
Sbjct: 180 EPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPND 239
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++P+N+KY L L+ L F + FEY ML G+ND+ AK LI + +
Sbjct: 240 ALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQ 299
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ CK+NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 300 LRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLA 357
>gi|254504202|ref|ZP_05116353.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11]
gi|222440273|gb|EEE46952.1| radical SAM enzyme, Cfr family [Labrenzia alexandrii DFL-11]
Length = 421
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/331 (41%), Positives = 188/331 (56%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW LY + E+ + KD + L E + S DGTRK LF
Sbjct: 71 LWHWLYVRGVSDFA--EMSNIAKDLRSKLDEAFTIARPKIVSEQISVDGTRKWLFQFPPR 128
Query: 198 --DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ + +ETV IP GR T+CVSSQVGC + C FC+TG L R+LT+ EI+ Q + A
Sbjct: 129 GAGNPVEVETVYIP-EEGRGTLCVSSQVGCTLTCTFCHTGTQKLVRNLTSEEILSQILIA 187
Query: 256 RRLLS--------------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R L SE +TN+V MGMGEPL+N ENV KA I GL S
Sbjct: 188 RDRLGDFPDAHTPQGAIVPSEGRLVTNIVMMGMGEPLYNFENVKKALLIASDGDGLSLSK 247
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG+VP++ + +E C LA+SL+A DE R+ ++PIN+K+ + L++ R
Sbjct: 248 RRITLSTSGVVPEIFRTGDEIGCMLAISLHAVRDEDRDILVPINKKWNIKELLDACRNYP 307
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML +NDS +DA L+ L++GIP KINLI FNP GSQ+ + E++
Sbjct: 308 GLSNAKRITFEYVMLKDINDSNEDALELVRLLKGIPAKINLIPFNPWPGSQYACSDWERI 367
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
EF +I+ AG +R RG D AACGQL
Sbjct: 368 EEFADIVNRAGYASPIRTPRGRDIFAACGQL 398
>gi|397164379|ref|ZP_10487834.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
gi|396093527|gb|EJI91082.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
Length = 388
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 139/360 (38%), Positives = 209/360 (58%), Gaps = 14/360 (3%)
Query: 102 DNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE 159
+N +P K +++ L ++ +++++ ++ +P +A +M W Y D + DE+
Sbjct: 10 NNALTVPNKDAKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCSDDF----DEMT 65
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
+NK + L E AE RA + + SSDGT K + D V ETV IP R T+CV
Sbjct: 66 DINKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIP-EEDRATLCV 123
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMG 275
SSQVGCA+ C+FC T + G R+L +EI+ Q A +++ + ITNVV MGMG
Sbjct: 124 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGTRPITNVVMMGMG 183
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D
Sbjct: 184 EPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPND 243
Query: 336 EVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
E+R+ I+PIN+KY + + +R + N +V EYVML VND + A L L+
Sbjct: 244 EIRDEIVPINKKYNIETFLGAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHELAELL 303
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 304 KDTPCKINLIPWNPFPGAPYGRSSNSRIDRFCKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|222087496|ref|YP_002546033.1| hypothetical protein Arad_4378 [Agrobacterium radiobacter K84]
gi|398378826|ref|ZP_10536978.1| 23S rRNA methyltransferase [Rhizobium sp. AP16]
gi|254807146|sp|B9JCI9.1|RLMN_AGRRK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|221724944|gb|ACM28100.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
gi|397724013|gb|EJK84492.1| 23S rRNA methyltransferase [Rhizobium sp. AP16]
Length = 411
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 188/316 (59%), Gaps = 20/316 (6%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPC 210
D + ++KD ++ML H + + S+DGTRK L + +ETV IP
Sbjct: 71 DAMANVSKDMREMLKAHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEVETVYIP- 129
Query: 211 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR------------- 257
GR T+CVSSQVGC++ C FC+TG L R+LTA EI+ Q + AR
Sbjct: 130 EEGRGTLCVSSQVGCSLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQG 189
Query: 258 -LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
++ +E ++N+V MGMGEPL+N E+V A I GL S R++T+STSG+VP++
Sbjct: 190 TIMPAEGRKVSNMVMMGMGEPLYNFESVKTALLIASDGDGLSLSKRRITLSTSGVVPEIY 249
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ +E LA+SL+A D++R+ ++PIN+KY L L++ R N ++ FEYVML
Sbjct: 250 RTGDEIGVMLAISLHAVRDDLRDMLVPINKKYPLKELMDACRAYPGLSNARRITFEYVML 309
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
GVNDS +DAK LI L++GIP KINLI FNP G+ + + E++ +F + + AG
Sbjct: 310 KGVNDSLEDAKGLIQLLKGIPSKINLIPFNPWPGTNYQCSDWEQIEKFADFINAAGYASP 369
Query: 437 LRLSRGDDQMAACGQL 452
+R RG D +AACGQL
Sbjct: 370 IRTPRGRDILAACGQL 385
>gi|387895486|ref|YP_006325783.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas fluorescens
A506]
gi|423693449|ref|ZP_17667969.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens SS101]
gi|387162859|gb|AFJ58058.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens A506]
gi|387998288|gb|EIK59617.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens SS101]
Length = 382
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY ML VND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMATLGEKRVLTIEYTMLKDVNDKLEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|163856328|ref|YP_001630626.1| hypothetical protein Bpet2017 [Bordetella petrii DSM 12804]
gi|205829671|sp|A9IK57.1|RLMN_BORPD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|163260056|emb|CAP42357.1| conserved hypothetical protein [Bordetella petrii]
Length = 381
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 199/359 (55%), Gaps = 20/359 (5%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFK 166
+ RV L G+ L V +P +A L W G D + TD L +DF+
Sbjct: 2 ETAERVNLLGLDGAALSDLVGQWGGKPFRARQLQRWIHQRGADSFDAMTD----LARDFR 57
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L++ +AL + SSDGTRK LF + G IETV IP + R T+CVSSQ GCA
Sbjct: 58 GQLAQQCRIQALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPED-DRGTLCVSSQAGCA 116
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------------ITNVVFMG 273
+NC+FC TG G R+LT++EI+ Q +A+R+L ++ G+ ++NVV MG
Sbjct: 117 VNCRFCSTGHQGFNRNLTSSEIIGQLWWAKRVLEADAGTARLGGAGNDDTRVVSNVVMMG 176
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N + ++ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A
Sbjct: 177 MGEPLLNYDQLLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSRDCPVALAVSLHAP 236
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
TD +R+ ++P+N+KY L L+ L + FEY ML G+ND+ A+ LI +
Sbjct: 237 TDALRDELVPLNKKYPLAELLAACERYLASAPRDFITFEYCMLDGINDTDQHARALIQVA 296
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ + CK+NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 297 RQVRCKLNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIVTTVRKTRGDDIDAACGQL 355
>gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
129PT]
gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT]
Length = 365
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 196/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + H T+ +NK ++ L AE +A + S+DGT K
Sbjct: 20 FRADQ-LVKWIYHFGEDNFDHMTN----INKKLREKLKTVAEIKAPEIAVEQRSADGTIK 74
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C FC T + G R+LT +EI+ Q
Sbjct: 75 WAMQVGDQQV-ETVYIP-ETDRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQV 132
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 133 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 192
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + ALA+SL+A DE+RN I+PIN+KY + +L+E++ L+ N+
Sbjct: 193 SGVVPALDKLSEMIDVALAISLHAPNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANH 252
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 253 GKVTIEYVMLDHINDGTEHAHQLAEVLKNTPCKINLIPWNPFPDAPYAKSSNTRIDRFQK 312
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV LR +RGDD AACGQL
Sbjct: 313 TLMEYGFTVILRKTRGDDIDAACGQLA 339
>gi|57236899|ref|YP_179852.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni RM1221]
gi|384444072|ref|YP_005660324.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni S3]
gi|424846555|ref|ZP_18271149.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NW]
gi|81557377|sp|Q5HS83.1|RLMN_CAMJR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|57165703|gb|AAW34482.1| radical SAM enzyme, Cfr family [Campylobacter jejuni RM1221]
gi|315059159|gb|ADT73488.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni S3]
gi|356485853|gb|EHI15840.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni NW]
Length = 356
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH G + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|365143329|ref|ZP_09348249.1| ribosomal RNA large subunit methyltransferase N [Klebsiella sp.
4_1_44FAA]
gi|378980078|ref|YP_005228219.1| hypothetical protein KPHS_39190 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386036000|ref|YP_005955913.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae KCTC 2242]
gi|402779528|ref|YP_006635074.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|419764239|ref|ZP_14290479.1| 23S rRNA methyltransferase domain protein [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|419975700|ref|ZP_14491107.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH1]
gi|419981597|ref|ZP_14496871.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH2]
gi|419986790|ref|ZP_14501918.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH4]
gi|419992529|ref|ZP_14507484.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH5]
gi|419998752|ref|ZP_14513536.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH6]
gi|420004590|ref|ZP_14519225.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH7]
gi|420010336|ref|ZP_14524810.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH8]
gi|420016468|ref|ZP_14530759.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH9]
gi|420022049|ref|ZP_14536222.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH10]
gi|420027472|ref|ZP_14541464.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH11]
gi|420033393|ref|ZP_14547198.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH12]
gi|420039761|ref|ZP_14553389.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH14]
gi|420044934|ref|ZP_14558409.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH16]
gi|420050811|ref|ZP_14564106.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH17]
gi|420056372|ref|ZP_14569529.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH18]
gi|420061024|ref|ZP_14574017.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH19]
gi|420067735|ref|ZP_14580524.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH20]
gi|420072996|ref|ZP_14585628.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH21]
gi|420080373|ref|ZP_14592797.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH22]
gi|420082543|ref|ZP_14594839.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH23]
gi|421911304|ref|ZP_16341067.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421917099|ref|ZP_16346663.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424831843|ref|ZP_18256571.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424932305|ref|ZP_18350677.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|425075470|ref|ZP_18478573.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082682|ref|ZP_18485779.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425086105|ref|ZP_18489198.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425092764|ref|ZP_18495849.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428149849|ref|ZP_18997658.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428936471|ref|ZP_19009875.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae JHCK1]
gi|428942440|ref|ZP_19015434.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae VA360]
gi|449059461|ref|ZP_21737156.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae hvKP1]
gi|205829779|sp|A6TCD6.1|RLMN_KLEP7 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|339763128|gb|AEJ99348.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae KCTC 2242]
gi|363649671|gb|EHL88778.1| ribosomal RNA large subunit methyltransferase N [Klebsiella sp.
4_1_44FAA]
gi|364519489|gb|AEW62617.1| hypothetical protein KPHS_39190 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397342365|gb|EJJ35527.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH1]
gi|397342883|gb|EJJ36038.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH2]
gi|397346794|gb|EJJ39906.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH4]
gi|397359708|gb|EJJ52399.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH6]
gi|397360780|gb|EJJ53452.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH5]
gi|397365269|gb|EJJ57894.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH7]
gi|397374848|gb|EJJ67162.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH9]
gi|397378915|gb|EJJ71118.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH8]
gi|397385452|gb|EJJ77548.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH10]
gi|397393278|gb|EJJ85040.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH11]
gi|397395056|gb|EJJ86770.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH12]
gi|397402169|gb|EJJ93780.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH14]
gi|397410403|gb|EJK01685.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH17]
gi|397410876|gb|EJK02146.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH16]
gi|397420629|gb|EJK11689.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH18]
gi|397427544|gb|EJK18312.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH20]
gi|397431931|gb|EJK22599.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH19]
gi|397438490|gb|EJK28988.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH21]
gi|397441407|gb|EJK31782.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH22]
gi|397452140|gb|EJK42214.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH23]
gi|397742822|gb|EJK90040.1| 23S rRNA methyltransferase domain protein [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|402540467|gb|AFQ64616.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|405594344|gb|EKB67759.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405600934|gb|EKB74099.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405605638|gb|EKB78667.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405611990|gb|EKB84756.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806492|gb|EKF77743.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|410114840|emb|CCM83692.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410120816|emb|CCM89288.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414709280|emb|CCN30984.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426298281|gb|EKV60699.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae JHCK1]
gi|426298658|gb|EKV61047.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae VA360]
gi|427540205|emb|CCM93796.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448874746|gb|EMB09778.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae hvKP1]
Length = 388
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 209/356 (58%), Gaps = 16/356 (4%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNK 163
+P K +++ L ++ +++++ ++ +P +A + K +Y DD DE+ +NK
Sbjct: 15 VPNKDAKINLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCCDDF-----DEMTDINK 69
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L E AE RA + + S+DGT K + D V ETV IP R T+CVSSQV
Sbjct: 70 VLRSKLKEVAEIRAPEVVEEQRSTDGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSSQV 127
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEPL
Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMGMGEPLL 187
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+
Sbjct: 188 NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRD 247
Query: 340 WIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PIN+KY + + ++R + N +V EYVML VND + A L L++ P
Sbjct: 248 EIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKDTP 307
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 CKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|121612139|ref|YP_001001357.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 81-176]
gi|167006246|ref|ZP_02272004.1| radical SAM enzyme, Cfr family protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|419618882|ref|ZP_14152407.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 129-258]
gi|419625133|ref|ZP_14158157.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|419642108|ref|ZP_14173918.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni ATCC 33560]
gi|205829695|sp|A1W1W6.1|RLMN_CAMJJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|87249061|gb|EAQ72023.1| radical SAM enzyme, Cfr family [Campylobacter jejuni subsp. jejuni
81-176]
gi|380594141|gb|EIB14949.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 129-258]
gi|380605477|gb|EIB25450.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23223]
gi|380625402|gb|EIB43991.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni ATCC 33560]
Length = 356
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 189/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPC 210
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 211 NR------------GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+ EIV Q ++ ++
Sbjct: 96 KKEKINTEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSTGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|414169431|ref|ZP_11425268.1| ribosomal RNA large subunit methyltransferase N [Afipia
clevelandensis ATCC 49720]
gi|410886190|gb|EKS34003.1| ribosomal RNA large subunit methyltransferase N [Afipia
clevelandensis ATCC 49720]
Length = 403
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 195/330 (59%), Gaps = 18/330 (5%)
Query: 136 GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195
Q L W + G +A T+ ++KD + L +H + S+DGTRK L
Sbjct: 57 AQQLWHWMYVRGAQTFADMTN----VSKDMRAELEKHFTVDRPEVVTEQISNDGTRKWLL 112
Query: 196 ML-DDGL----VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
L DG+ +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV
Sbjct: 113 RLPGDGVGRAHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVG 171
Query: 251 QAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
Q + AR L+ + +TN+V MGMGEPL+N + V A I+ +G+ S R
Sbjct: 172 QIMVARDRLNDWIDRETPNGNRLVTNIVMMGMGEPLYNFDAVRDALLIVSDNEGIGISRR 231
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
++T+STSG+VP + + +E LA+SL+A DE+RN ++P+NRKY + L++ R
Sbjct: 232 RITLSTSGVVPNIARTGDEIGVMLAISLHAVRDELRNELVPLNRKYPIKELLDACRAYPG 291
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
N+ ++ FEYVML GVNDS DDA+ L+ L++GIP KINLI FNP GS++ + E++
Sbjct: 292 SSNSRRITFEYVMLKGVNDSLDDARLLVKLLKGIPAKINLIPFNPWPGSKYECSDWEQIE 351
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + AG + +R RG D +AACGQL
Sbjct: 352 KFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|375262232|ref|YP_005021402.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
KCTC 1686]
gi|397659355|ref|YP_006500057.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
E718]
gi|402844577|ref|ZP_10892929.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. OBRC7]
gi|421726692|ref|ZP_16165861.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
M5al]
gi|423104272|ref|ZP_17091974.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5242]
gi|423125188|ref|ZP_17112867.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5250]
gi|365911710|gb|AEX07163.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
KCTC 1686]
gi|376384135|gb|EHS96861.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5242]
gi|376399439|gb|EHT12054.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5250]
gi|394347547|gb|AFN33668.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
E718]
gi|402273534|gb|EJU22731.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. OBRC7]
gi|410372419|gb|EKP27131.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
M5al]
Length = 388
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 210/356 (58%), Gaps = 16/356 (4%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLNK 163
+P K +++ L ++ +L+++ ++ +P +A + K +Y +C D E+ +NK
Sbjct: 15 VPNKDAKINLLDLNRQQLREFFKNMGEKPFRADQVMKWMY-----HYCCDNFDEMTDINK 69
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQV
Sbjct: 70 VLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQV 127
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEPL
Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMGMGEPLL 187
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+
Sbjct: 188 NLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRD 247
Query: 340 WIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PIN+KY + + ++R + N +V EYVML VND + A L L++ P
Sbjct: 248 EIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKDTP 307
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 CKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|429091189|ref|ZP_19153877.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
gi|429097418|ref|ZP_19159524.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426283758|emb|CCJ85637.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426744313|emb|CCJ79990.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
Length = 388
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 207/352 (58%), Gaps = 14/352 (3%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
K ++ L ++ E++++ ++ +P +A +M W Y D + DE+ +NK +
Sbjct: 18 KSEKINLLDLNRQEMREFFKTLGEKPFRADQVMKWMYHYCSDDF----DEMTDINKVLRG 73
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA+
Sbjct: 74 KLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCAL 131
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVEN 283
C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+ N
Sbjct: 132 ECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTN 191
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ I+P
Sbjct: 192 VVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVP 251
Query: 344 INRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
IN+KY + + +R + N +V EYVML VND + A +L L++ PCKIN
Sbjct: 252 INKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKIN 311
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
LI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 312 LIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|110635192|ref|YP_675400.1| radical SAM protein [Chelativorans sp. BNC1]
gi|122965694|sp|Q11EE0.1|RLMN_MESSB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|110286176|gb|ABG64235.1| 23S rRNA m(2)A-2503 methyltransferase [Chelativorans sp. BNC1]
Length = 408
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 199/360 (55%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G+S E+ Q + S Q M LW LY + + ++K+ + L E
Sbjct: 27 LIGLSREEMAQALASIGVPERQVNMRVRQLWHWLYVRGVSDFS--RMFNISKELRAKLDE 84
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S DGTRK L + +ETV IP R T+C+SSQVGC
Sbjct: 85 HFTIARPEIVEEQISQDGTRKWLLRFPPRGAGRPVEVETVYIP-EEDRGTLCISSQVGCT 143
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------------SEVGSITNVVFM 272
+ C FC+TG + R+LTA EI++Q + AR L +E ITN+V M
Sbjct: 144 LTCSFCHTGTQKMVRNLTAGEILDQLLIARDRLGDFPDADTPDGAIVPAEGRKITNIVMM 203
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N ENV +A + GL S R++T+STSG+VP++ + E LA+SL+A
Sbjct: 204 GMGEPLYNFENVKQALLVASDGDGLSLSKRRITLSTSGVVPEIYRTGEEIGIMLAISLHA 263
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+RN ++PIN+KY L L++ R N ++ FEYVML GVNDS DDA+ L+ L
Sbjct: 264 VRDELRNELVPINKKYPLKDLLDACRAYPGLSNARRITFEYVMLKGVNDSLDDARELVRL 323
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++GIP KINLI FNP GS + + E++ +F ++ AG +R RG D +AACGQL
Sbjct: 324 LKGIPAKINLIPFNPWPGSAYECSDWEQIEKFAELVNRAGYASPIRTPRGRDILAACGQL 383
>gi|377820992|ref|YP_004977363.1| radical SAM enzyme, Cfr family [Burkholderia sp. YI23]
gi|357935827|gb|AET89386.1| radical SAM enzyme, Cfr family [Burkholderia sp. YI23]
Length = 380
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 143/342 (41%), Positives = 198/342 (57%), Gaps = 27/342 (7%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA-LSLKDILT---SSD 188
FR Q L W YG D+ +G+ D K L E + RA +++ I++ S+D
Sbjct: 29 FRAKQ-LQRWIHQYG-------ADDFDGMT-DLAKSLREKLKGRANMAMPGIISDHVSTD 79
Query: 189 GTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI 248
GTRK L + +G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+LT EI
Sbjct: 80 GTRKWLIDVGNGNAVETVFIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEI 138
Query: 249 VEQ---AVFA-RRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
+ Q A FA RR L EVG +TNVV MGMGEP+ N + V+ A +M+ +
Sbjct: 139 IGQLRMAEFALRRSLGREVGGPGKGERVVTNVVMMGMGEPMLNYDAVVPAMRLMLDDNAY 198
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R+VT+STSG+VP + + + ALAVSL+A D +R+ ++P+N+KY L L+
Sbjct: 199 GLSRRRVTLSTSGVVPMMDRLAADLPVALAVSLHAPNDPLRDMLVPLNKKYPLRELMAAC 258
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
+ L + FEY ML GVNDS A+ L+ + + +PCK NLI FNP S T +
Sbjct: 259 QRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRDVPCKFNLIPFNPFPESGLTRSK 318
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
+E++ F +L AG +R +RGDD AACGQL GA+Q
Sbjct: 319 NEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLA--GAVQ 358
>gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii
Ech703]
gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703]
Length = 393
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 137/330 (41%), Positives = 195/330 (59%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDE---LEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + +NK + L AE RA + D SSDG
Sbjct: 48 FRADQ-VMKW-------IYHYCCDDFNQMTDINKALRTRLQAIAEIRAPDVVDEQRSSDG 99
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K ++D G +ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 100 TIKWAILVD-GQRVETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 157
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ + + ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT
Sbjct: 158 GQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVT 217
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK- 364
+STSG+VP L + + + ALA+SL+A TDE+RN IMPIN+KY + + +R L
Sbjct: 218 LSTSGVVPALDKLGDMIDVALAISLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSN 277
Query: 365 -NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++
Sbjct: 278 ANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDR 337
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 338 FSKVLMEYGFTTIVRKTRGDDIDAACGQLA 367
>gi|452751805|ref|ZP_21951550.1| Ribosomal RNA large subunit methyltransferase N [alpha
proteobacterium JLT2015]
gi|451961024|gb|EMD83435.1| Ribosomal RNA large subunit methyltransferase N [alpha
proteobacterium JLT2015]
Length = 399
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 205/358 (57%), Gaps = 23/358 (6%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFK 166
RV L G++ EL+ + + QA M LW +Y G +A TD + K +
Sbjct: 23 RVNLVGLTKDELRAALEAAGIEGKQARMRTKQLWHWIYLRGKSDFAEMTD----IAKMHR 78
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
++L++ + L S DGTRK L DDG E V IP + R T+CVSSQVGC
Sbjct: 79 ELLAKLFVIARPEVTQALVSEDGTRKWLLKTDDGNEYEMVFIP-DADRGTLCVSSQVGCT 137
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----------SSEVGSITNVVFMGMGE 276
+NC+FC+TG M L R+LTA EI Q + AR L + E +TN+V MGMGE
Sbjct: 138 LNCRFCHTGTMKLVRNLTAGEIAGQIMLARDALGEWPKPGEDLTGEARMLTNIVMMGMGE 197
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL+N +NV A +++ E GL S R++T+STSG+VP +++ E LAVSL+A E
Sbjct: 198 PLYNFDNVKGALLLVMDETGLGLSRRRITLSTSGVVPMMQRCGEELGVNLAVSLHAVNKE 257
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ-- 394
R+ I+P+N+KY + L++ + N ++ FEYVML VNDS +DA+ L+ L++
Sbjct: 258 TRDEIVPLNKKYGIEELLQACADYPGASNARRITFEYVMLKDVNDSDEDARELVRLIKRY 317
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+P K+NLI FNP GS + + +++ F I+ AG + +R RG D MAACGQL
Sbjct: 318 KLPAKVNLIPFNPWPGSNYECSHPKRIQAFSKIVFDAGISAPVRTPRGRDIMAACGQL 375
>gi|442610727|ref|ZP_21025437.1| Ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747756|emb|CCQ11499.1| Ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 377
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 201/355 (56%), Gaps = 20/355 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W +G DE+ LNK + L E E +A + +SDGT K
Sbjct: 30 FRADQ-MMKWIYHFG----VSNFDEMTNLNKKLRATLHEKCEIKAPEIAVKQVASDGTIK 84
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L+ G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+L +EI+ Q
Sbjct: 85 YALALEGGQEVETVWIP-EKDRATLCVSSQVGCALECTFCSTAQQGFNRNLKVSEIIGQV 143
Query: 253 VFARRLLSSEVG--------SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
+++++G ITNVV MGMGEPL N+ NV+ A +M+ + G S R+V
Sbjct: 144 W----RVATDIGLYNDSTRRPITNVVMMGMGEPLLNLNNVVPAMELMMDDWGFGLSKRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH-F 363
T+STSG+VP L + ALA+SL+A + +R+ I+PIN+KY + + R +
Sbjct: 200 TLSTSGVVPALDLLKERIDVALAISLHAPNNPLRDEIVPINKKYPIEEFLAACRRYIDGS 259
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
K N V EYVML G+ND+ D A L+ +++G P KINLI FNP GS + +++ ++
Sbjct: 260 KANKDVTIEYVMLQGINDTTDHAHELVQVLKGTPSKINLIPFNPFPGSDYQRSSNSRIDR 319
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQL-GNPGAIQAPLLRVPEKFQTAINASI 477
F +L AG T +R +RGDD AACGQL G+ LL+ + + AI+ S+
Sbjct: 320 FSKVLQEAGLTCIVRRTRGDDIDAACGQLVGDVKDRTKRLLKKKQMDENAISISV 374
>gi|401677597|ref|ZP_10809571.1| RlmN Protein [Enterobacter sp. SST3]
gi|400215120|gb|EJO46032.1| RlmN Protein [Enterobacter sp. SST3]
Length = 388
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 206/358 (57%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + TD +
Sbjct: 12 IPAVPNKYGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTD----I 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + S+DGT K + D V ETV IP R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSADGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 246 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|419695637|ref|ZP_14223527.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23210]
gi|380677842|gb|EIB92702.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23210]
Length = 356
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSNLPKDLRLELAQNFHLSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|354596617|ref|ZP_09014634.1| Ribosomal RNA large subunit methyltransferase N [Brenneria sp.
EniD312]
gi|353674552|gb|EHD20585.1| Ribosomal RNA large subunit methyltransferase N [Brenneria sp.
EniD312]
Length = 393
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D +A TD +NK F+ L + AE RA + D SSDGT K
Sbjct: 49 FRADQ-VMKWIYHYCCDDFAQMTD----INKAFRAKLQQVAEIRAPEVVDEQRSSDGTIK 103
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
++ D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 104 WAILVGDQRV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 161
Query: 253 VFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + + ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT+ST
Sbjct: 162 WRAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLST 221
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + + ALA+SL+A DE+RN IMP+N+KY + + +R L N
Sbjct: 222 SGVVPALDKLGDMIDVALAISLHAPNDEIRNEIMPLNKKYNIETFLGAVRRYLEKSNANQ 281
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 282 GRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 341
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G T +R +RGDD AACGQL
Sbjct: 342 VLMEYGFTTIVRKTRGDDIDAACGQLA 368
>gi|374620265|ref|ZP_09692799.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
gi|374303492|gb|EHQ57676.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
Length = 378
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 199/351 (56%), Gaps = 15/351 (4%)
Query: 111 GSRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
S+V L GM+ +L+ + + FR Q +M W G + T+ L K +
Sbjct: 12 ASKVNLLGMTRAQLEAFFGEIGEKKFR-AQQVMKWMHHQGVRDFQAMTN----LGKGLRD 66
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L AE ++ S+DGTRK +D G ++E V+IP R T+CVSSQVGC++
Sbjct: 67 RLESCAEITPPQIESQQDSADGTRKWAIKVDGGALVEAVLIP-EGDRATLCVSSQVGCSL 125
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-EVGS---ITNVVFMGMGEPLHNVEN 283
+C+FC TG+ G +R LTAAEI+ Q A + G +TNVV MGMGEPL N +N
Sbjct: 126 DCKFCSTGKQGFQRDLTAAEIIGQVWLAINSYDGWQAGKGRVVTNVVMMGMGEPLLNFDN 185
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ + ++M + S RKVT+STSG+VP L + S+ +LAVSL+A D +RN I+P
Sbjct: 186 VVSSMDLMCDDLAYGLSKRKVTLSTSGVVPALDRLAELSDVSLAVSLHAPNDAIRNKIVP 245
Query: 344 INRKYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
INR+Y + L+++ R + + + K V EY +LAGVND + A L L++ PCKIN
Sbjct: 246 INRRYPIAKLLDSARAYIDAQTDRKRVVTIEYTLLAGVNDQVEHAHELAALLKDYPCKIN 305
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
LI FN S F + + F +L AG V +R +RGDD AACGQL
Sbjct: 306 LIPFNDFPNSGFERPSGNAVSRFWKVLMEAGFIVTVRTTRGDDIDAACGQL 356
>gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella
putrefaciens CN-32]
gi|205829884|sp|A4Y8U3.1|RLMN_SHEPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32]
Length = 373
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 200/342 (58%), Gaps = 14/342 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 28 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISSFQKSTDGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAIHVGEGQEVETVYIPED-DRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + + G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFAKDTGDRPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N
Sbjct: 202 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 261
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTVEYVMLDHINDSTEQAHELAKLMEDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>gi|393723122|ref|ZP_10343049.1| radical SAM protein [Sphingomonas sp. PAMC 26605]
Length = 402
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 206/359 (57%), Gaps = 18/359 (5%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDI--WAHCTDELEG 160
+P+ R+ L G+S +L+ + + P QA + LW +Y + +A TD
Sbjct: 25 VPRSDGRIDLLGLSKADLRLALETSQLDPKQAKLRAKQLWHWIYNRGVRDFALMTD---- 80
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+ K + L + + + S+DGTRK L DDG E V IP + R T+CVS
Sbjct: 81 IAKTMQPWLEQRFVISRPQVVEAQVSNDGTRKWLLRSDDGNDYEMVFIP-DADRGTLCVS 139
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS-----EVGSITNVVFMGMG 275
SQVGC +NC+FC+TG M L R+LTA EIV Q + AR L E +TN+V MGMG
Sbjct: 140 SQVGCTLNCRFCHTGTMRLVRNLTAGEIVGQVMLARDALGEWPSQPEGRMLTNIVMMGMG 199
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL+N +NV I++ GL S R++T+STSG+VP + + E + LA+SL+A T
Sbjct: 200 EPLYNFDNVRDGLKIVMDGDGLGLSRRRITLSTSGVVPLMARAGEEISVNLAISLHAVTK 259
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ- 394
EVR+ ++PIN+KY + L++ + N ++ FEYVML NDS DA+ L+ L++
Sbjct: 260 EVRDELVPINKKYGIEELLQACADYPGTNNARRITFEYVMLKDKNDSDADARELVRLLKH 319
Query: 395 -GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+P K+NLI FNP G+ + +T E++ F NI+ AG + +R RG D AACGQL
Sbjct: 320 YDLPAKVNLIPFNPWPGAPYECSTPERIKSFSNIVFDAGISAPVRTPRGRDIDAACGQL 378
>gi|187478836|ref|YP_786860.1| hypothetical protein BAV2346 [Bordetella avium 197N]
gi|123725044|sp|Q2KY87.1|RLMN_BORA1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|115423422|emb|CAJ49956.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 382
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 182/321 (56%), Gaps = 19/321 (5%)
Query: 151 WAH-----CTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L +DF+ LSE A AL + SSDGTRK LF + G IET
Sbjct: 37 WVHQRSVDSFDAMTDLARDFRAQLSERAIIEALPVNIEQRSSDGTRKWLFDVGQGNAIET 96
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS 265
V IP + R T+C+SSQ GC +NC+FC TG G R+L +EI+ Q +A+R+L +++GS
Sbjct: 97 VFIPED-DRGTLCISSQAGCVVNCRFCSTGHQGFNRNLRTSEIIGQLWWAKRVLEADIGS 155
Query: 266 -------------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
I+NVV MGMGEPL N + V+ A +M+ + G S R+VTVSTSG+V
Sbjct: 156 ARLANAGAEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNGYGLSRRRVTVSTSGVV 215
Query: 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372
P + + + ALAVSL+A D +R+ ++P+N+KY L L+ L + FE
Sbjct: 216 PMMDRLAQDCPVALAVSLHAPNDALRDDLVPLNKKYPLKELLAACERYLAHAPRDFITFE 275
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
Y ML G+ND+ AK LI L + + CK+NLI FNP S + ++ F L AG
Sbjct: 276 YCMLDGINDTDQHAKELIQLARQVRCKLNLIPFNPFPASGLKRSAAPRVKVFAQRLMDAG 335
Query: 433 CTVFLRLSRGDDQMAACGQLG 453
+R +RGDD AACGQL
Sbjct: 336 IITTVRKTRGDDIDAACGQLA 356
>gi|325272138|ref|ZP_08138570.1| radical SAM protein [Pseudomonas sp. TJI-51]
gi|324102734|gb|EGC00149.1| radical SAM protein [Pseudomonas sp. TJI-51]
Length = 381
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 204/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFDSIGEKRFRAGQ-VMKWIHHFGVSDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRPPEVVSEDISADGTRKWVIRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKMLLESCMGYMATLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|328541802|ref|YP_004301911.1| ribosomal RNA large subunit methyltransferase N [Polymorphum gilvum
SL003B-26A1]
gi|326411554|gb|ADZ68617.1| Ribosomal RNA large subunit methyltransferase N [Polymorphum gilvum
SL003B-26A1]
Length = 414
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 192/337 (56%), Gaps = 26/337 (7%)
Query: 137 QALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKIL 194
+A LW LY G +A T+ + KD ++ L + S DGTRK L
Sbjct: 64 RAAQLWHWLYVRGVSDFALMTN----IAKDLRQQLDARFTIARPEIVSEQISVDGTRKWL 119
Query: 195 FML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
F + IETV IP GR T+CVSSQVGC + C FC+TG L R+LTA EI+
Sbjct: 120 FRFPPRGAGRPVEIETVYIP-EEGRGTLCVSSQVGCTLTCTFCHTGTQKLVRNLTAEEIL 178
Query: 250 EQAVFARRLLS--------------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
Q + AR L SE ++N+V MGMGEPL+N ENV KA I
Sbjct: 179 SQILMARDRLGDFPDAATPQGAVVPSEGRLVSNIVMMGMGEPLYNFENVKKALLIASDGD 238
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 355
GL S R++T+STSG+VP++ + E C LA+SL+A D++R+ ++PINRK+++ L++
Sbjct: 239 GLSLSKRRITLSTSGVVPEIARAGAEIGCMLAISLHAVNDDLRDVLVPINRKWRIRDLLD 298
Query: 356 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP 415
R N ++ FEYVML GVNDS DA+ L+ L++GIP KINLI FNP GS +
Sbjct: 299 ACRAYPGLSNAKRITFEYVMLKGVNDSDADARELVRLLKGIPAKINLIPFNPWPGSDYEC 358
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ E++ +F +I+ AG +R RG D AACGQL
Sbjct: 359 SDWERIEQFADIVNRAGYASPIRTPRGRDIFAACGQL 395
>gi|387930290|gb|AFK11687.1| ribosomal RNA large subunit methyltransferase [Gallibacterium
anatis]
Length = 372
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 196/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W YG+D + D + +NK ++ L + AE +A + S DGT K
Sbjct: 28 FRADQ-IMKWIYHYGEDNF----DNMTNINKVLREKLKQVAEIKAPEIAVEQRSFDGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D IE+V IP R T+CVSSQVGCA+ C FC T + G R+LT +EI+ Q
Sbjct: 83 WAMQVGDQQ-IESVYIP-EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQV 140
Query: 253 VFARRLL----SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ ++V ITNVV MGMGEPL NV NV+ A IM+ + G S R+VT+ST
Sbjct: 141 WRASKVIGAFGETKVRPITNVVMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLST 200
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + ALA+SL+A DE+RN I+P+N+KY + +L++++ L N+
Sbjct: 201 SGVVPALDKLGEMIDVALAISLHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANH 260
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML VND + A +L +++ PCKINLI +NP + + +T+ ++ F+
Sbjct: 261 GKVTIEYVMLDHVNDEVEHAHQLAKVLKNTPCKINLIPWNPFPEAPYNKSTNTRIDRFQK 320
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 321 TLMEYGFTVIVRKTRGDDIDAACGQLA 347
>gi|24374826|ref|NP_718869.1| 23S rRNA (adenine2503-C2)-methyltransferase RlmN [Shewanella
oneidensis MR-1]
gi|81589118|sp|Q8EC29.1|RLMN_SHEON RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24349512|gb|AAN56313.1| 23S rRNA (adenine2503-C2)-methyltransferase RlmN [Shewanella
oneidensis MR-1]
Length = 373
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 200/342 (58%), Gaps = 14/342 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 28 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISGYQKSADGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAIHVGEGQEVETVYIPED-DRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + E G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFAKETGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N
Sbjct: 202 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 261
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
Length = 372
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/334 (42%), Positives = 195/334 (58%), Gaps = 19/334 (5%)
Query: 133 FRPGQAL-MLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILT---SSD 188
FR Q L +++R D ++ TD LNK +K L+E A +SL +I+ S+D
Sbjct: 28 FRARQVLRWIYQRFVTD--FSAMTD----LNKSLRKRLAESA---VISLPEIVQQHRSAD 78
Query: 189 GTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI 248
GTRK L + IETV IP R T+C+SSQVGC ++C FC TG+ G R+L +EI
Sbjct: 79 GTRKWLLRIHGNNCIETVFIP-EEDRGTLCISSQVGCILDCSFCATGKQGFNRNLAISEI 137
Query: 249 VEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
+ Q A ++L ITNVV MGMGEPL N NV+ A N+M+ + S R+VT
Sbjct: 138 IGQLWLANKILGRTPKGERIITNVVMMGMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVT 197
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+ST+G+VP + + +LAVSL+A TD++R+ ++P+N+KY L L+ R +
Sbjct: 198 LSTAGMVPAIDRLRAVCPVSLAVSLHAPTDKLRDELVPLNKKYPLEDLLSACRRYVAGDR 257
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
V FEYVMLA VNDSF A+ L+ L+QG+P K+NLI FNP GS + + E + FR
Sbjct: 258 RRAVTFEYVMLADVNDSFSHARALLRLLQGLPAKVNLIPFNPFPGSVYRRSDAETIDRFR 317
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
L G R +RGDD AACGQL G +Q
Sbjct: 318 EKLLRGGIMTVTRKTRGDDIAAACGQLA--GQVQ 349
>gi|158422376|ref|YP_001523668.1| hypothetical protein AZC_0752 [Azorhizobium caulinodans ORS 571]
gi|205829661|sp|A8IQ73.1|RLMN_AZOC5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|158329265|dbj|BAF86750.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 406
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 198/356 (55%), Gaps = 27/356 (7%)
Query: 118 GMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA 177
G++ + R R Q L W L G +A T+ ++K + L+EH
Sbjct: 34 GLALAAIGVPERERKMRVNQ-LWHWIYLRGATDFAEMTN----VSKTLRTQLAEHYSLAR 88
Query: 178 LSLKDILTSSDGTRKILFML------DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
+ S DGTRK L L + +E V IP R R T+CVSSQVGC +NC F
Sbjct: 89 PEIVVEQVSQDGTRKWLLRLPAETPGERPHEVEAVYIP-ERDRGTLCVSSQVGCTLNCAF 147
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS---------------ITNVVFMGMGE 276
C+TG L R+LTAAEIV Q + AR L G +TN+VFMGMGE
Sbjct: 148 CHTGTQRLVRNLTAAEIVAQVLVARDRLGDYPGRERAVGPGLPTEGDRLVTNIVFMGMGE 207
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL+ ++V +A I+ GL R++TVSTSG+VP++++ E LA+SL+A D+
Sbjct: 208 PLYAYDSVAEAIEILADGDGLGLGKRRITVSTSGVVPEIEKLGREVGPMLAISLHAVRDD 267
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+R+ ++PIN+KY + L+E R N ++ FEYVML GVNDS DA+ L+ L++G+
Sbjct: 268 LRDVLVPINKKYPIAELMEACRTYPAASNAKRITFEYVMLKGVNDSPADARALVKLLEGV 327
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P KINLI FNP G+++ + E + +F +I+ AG +R RG D +AACGQL
Sbjct: 328 PAKINLIPFNPWPGTKYECSDWETIEKFSDIVFRAGYASPVRTPRGRDILAACGQL 383
>gi|222823067|ref|YP_002574640.1| ribosomal RNA large subunit methyltransferase N [Campylobacter lari
RM2100]
gi|254807160|sp|B9KEA4.1|RLMN_CAMLR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|222538288|gb|ACM63389.1| conserved hypothetical protein, radical SAM enzyme (Cfr family)
[Campylobacter lari RM2100]
Length = 356
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 195/350 (55%), Gaps = 24/350 (6%)
Query: 119 MSFT--ELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFR 176
+ FT EL+ V+ FR Q + Y DD ++ L KDF+ L ++ F
Sbjct: 8 LDFTKEELENLVQPK-FRAKQIFEWVYKKYADDFL-----QMSSLPKDFRVYLQKNFHFS 61
Query: 177 ALSLKDILTSSDGTRKILFMLDDGLVIETVVIP------------CNRGRTTVCVSSQVG 224
L S DG+ K LF L DG IE V++P R T+CVSSQVG
Sbjct: 62 PLKCVKDEKSKDGSIKYLFELLDGKKIEAVLLPMKEELVDENGKIIKHARYTICVSSQVG 121
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENV 284
C C FC T + GL R+L+A EIV Q ++ ++ N+V+MGMGEPL N++NV
Sbjct: 122 CKSGCSFCLTAKGGLSRNLSAGEIVGQILWIKKHNKIPYERRVNIVYMGMGEPLDNLKNV 181
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIM 342
KA I+ L SPR+ T+STSGL Q+K+ L E N LA+SL+A DE+R+ +M
Sbjct: 182 SKAVKILADNDALAISPRRQTISTSGLAKQIKE-LGEMNLGVLLAISLHAVNDELRSELM 240
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+ Y + ++E +R +V+FEY+++ G+ND + AK L+ L+ GI K+NL
Sbjct: 241 PINKAYNIASIMEAVRN-FPIDQRKRVMFEYLLIDGINDKIEHAKELVKLLNGIKAKVNL 299
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNPH GS + + E I+F++ L+ G T +R S+G D AACGQL
Sbjct: 300 ILFNPHEGSLYNRPSVENAIKFQDYLSAKGVTCTIRESKGLDISAACGQL 349
>gi|187928149|ref|YP_001898636.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
gi|254807195|sp|B2U9U6.1|RLMN_RALPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|187725039|gb|ACD26204.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
Length = 383
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 187/329 (56%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGASEFGEMTD----LAKSLREKLATRANIQAPAVISDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 81 KWLVDVGQGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPALALMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
TVSTSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVND+ + A+ L+ +V +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|419697890|ref|ZP_14225617.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23211]
gi|380676920|gb|EIB91796.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23211]
Length = 356
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDTEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DSINDKIEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|374335136|ref|YP_005091823.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
gi|372984823|gb|AEY01073.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
Length = 372
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 197/340 (57%), Gaps = 21/340 (6%)
Query: 123 ELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKD 182
EL + FR Q +M W +G D + D++ +NK + L E AE RA +
Sbjct: 18 ELFHEMGEKPFRADQ-VMKWIYHFGCDDF----DQMTNINKVLRGKLKERAEIRAPEITV 72
Query: 183 ILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
S+DGT K + D V ETV IP + R T+CVSSQVGCA++C+FC T + G R+
Sbjct: 73 EKKSADGTIKWAMQVGDQEV-ETVYIP-DGDRATLCVSSQVGCALDCKFCSTAQQGFNRN 130
Query: 243 LTAAEIVEQAVFARRLLSSEVG--------SITNVVFMGMGEPLHNVENVIKAANIMVHE 294
L +EI+ Q A +S VG ITNVV MGMGEPL N+ NV+ A +M+ +
Sbjct: 131 LKVSEIIGQVWRA----ASRVGFVRDSGRKPITNVVMMGMGEPLLNLNNVVPAMRLMLED 186
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
G S R+VT+STSG+VP L + + + ALAVSL+A D++R+ IMPIN KY + LI
Sbjct: 187 YGFGLSKRRVTLSTSGVVPALDKLADMIDVALAVSLHAPNDQLRSEIMPINDKYNIAELI 246
Query: 355 ETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
++R L N+ KV EYV+L VND A L L++ +PCKINLI FNP G+
Sbjct: 247 ASIRRYLAVSNANHGKVTIEYVLLDHVNDDMQHAHELAELLKDLPCKINLIPFNPFPGNP 306
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ ++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 307 YGKPSNSRIDRFNKVLMQYGNTVTIRKTRGDDIDAACGQL 346
>gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81419944|sp|Q7N709.1|RLMN_PHOLL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 392
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 208/356 (58%), Gaps = 20/356 (5%)
Query: 109 KKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNK 163
KKG ++ L ++ +++Q+ +P +A +M W I+ +C D+ E +NK
Sbjct: 21 KKGGKINLLDLNRKQMRQFFIDMGEKPFRADQVMKW-------IYHYCYDDFEQMTDINK 73
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L + AE RA + + S+DGT K + D V ETV IP + R T+CVSSQV
Sbjct: 74 ILRAKLQQVAEIRAPEVAEEQRSADGTIKWAITVGDQQV-ETVYIPED-DRATLCVSSQV 131
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MGMGEPL
Sbjct: 132 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMGMGEPLL 191
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD+VR+
Sbjct: 192 NLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDVRD 251
Query: 340 WIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PINRKY + + +R L N +V EYVML +NDS + A +L ++ P
Sbjct: 252 DIVPINRKYNIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQLAECLKETP 311
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 312 SKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACGQLA 367
>gi|398893847|ref|ZP_10646356.1| 23S rRNA methyltransferase [Pseudomonas sp. GM55]
gi|398183469|gb|EJM70952.1| 23S rRNA methyltransferase [Pseudomonas sp. GM55]
Length = 382
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQLEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|423115572|ref|ZP_17103263.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5245]
gi|376380962|gb|EHS93703.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5245]
Length = 388
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 210/356 (58%), Gaps = 16/356 (4%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLNK 163
+P K +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +NK
Sbjct: 15 VPNKDAKINLLDLNRQQMREFFKNMGEKPFRADQVMKWMY-----HYCCDNFDEMTDINK 69
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQV
Sbjct: 70 VLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQV 127
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEPL
Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMGMGEPLL 187
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+
Sbjct: 188 NLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRD 247
Query: 340 WIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PIN+KY + + ++R + N +V EYVML VND + A L L++ P
Sbjct: 248 EIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKDTP 307
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 CKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|397696914|ref|YP_006534797.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
DOT-T1E]
gi|421524502|ref|ZP_15971124.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
LS46]
gi|397333644|gb|AFO50003.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
DOT-T1E]
gi|402751681|gb|EJX12193.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
LS46]
Length = 381
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 204/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFDSIGEKRFRAGQ-VMKWIHHFGVSDFAAMTN----VGKVLREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRPPEVVSEDISADGTRKWVIRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKMLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|340000243|ref|YP_004731127.1| hypothetical protein SBG_2301 [Salmonella bongori NCTC 12419]
gi|339513605|emb|CCC31359.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 388
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 210/357 (58%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLN 162
V+P K +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +N
Sbjct: 14 VVPNKEAKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMY-----HYCCDNFDEMTDIN 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQ
Sbjct: 69 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQ 126
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 187 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 247 DEIVPINKKYNIDTFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDT 306
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|336310628|ref|ZP_08565600.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
gi|386314500|ref|YP_006010665.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|205829898|sp|A1RHQ0.2|RLMN_SHESW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|335866358|gb|EGM71349.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
Length = 373
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 200/342 (58%), Gaps = 14/342 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 28 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISSFQKSTDGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAIHVGEGQEVETVYIPED-DRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + + G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFAKDTGDRPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N
Sbjct: 202 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 261
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTVEYVMLDHINDSTEQAHELAKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae
Ech1591]
gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591]
Length = 392
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/386 (38%), Positives = 217/386 (56%), Gaps = 28/386 (7%)
Query: 77 LSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPG 136
+S T SP + ++ + A + IN+L +R ++ F EL + FR
Sbjct: 1 MSEQTVSPVVAVS--DAIAVAANSNEKINLL--DFNRQQMRAF-FAELGE----KPFRAD 51
Query: 137 QALMLWKRLYGDDIWAHCTDE---LEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 193
Q +M W I+ +C D+ + +NK + L AE RA + D SSDGT K
Sbjct: 52 Q-VMKW-------IYHYCCDDFNQMTDINKVLRGKLQAIAEIRAPEVVDEQRSSDGTIKW 103
Query: 194 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAV 253
++D G +ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 104 AILVD-GQRVETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW 161
Query: 254 FARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
A +++ + + ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT+STS
Sbjct: 162 RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTS 221
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NNY 367
G+VP L + + + ALA+SL+A TDE+RN IMPIN+KY + + +R L N
Sbjct: 222 GVVPALDKLGDMIDVALAISLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQG 281
Query: 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNI 427
+V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++ F +
Sbjct: 282 RVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKV 341
Query: 428 LAGAGCTVFLRLSRGDDQMAACGQLG 453
L G T +R +RGDD AACGQL
Sbjct: 342 LMEYGFTTIVRKTRGDDIDAACGQLA 367
>gi|206580011|ref|YP_002237132.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae 342]
gi|288934092|ref|YP_003438151.1| Cfr family radical SAM protein [Klebsiella variicola At-22]
gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
gi|254807185|sp|B5XNL2.1|RLMN_KLEP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
Length = 388
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 209/356 (58%), Gaps = 16/356 (4%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNK 163
+P K +++ L ++ +++++ ++ +P +A + K +Y DD DE+ +NK
Sbjct: 15 VPNKDAKINLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCCDDF-----DEMTDINK 69
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L E AE RA + + S+DGT K + D V ETV IP R T+CVSSQV
Sbjct: 70 VLRGKLKEVAEIRAPEVVEEQRSTDGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSSQV 127
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEPL
Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMGMGEPLL 187
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+
Sbjct: 188 NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRD 247
Query: 340 WIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PIN+KY + + ++R + N +V EYVML VND + A L L++ P
Sbjct: 248 EIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKDTP 307
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 CKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|332880555|ref|ZP_08448229.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357046079|ref|ZP_09107709.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella clara YIT 11840]
gi|332681543|gb|EGJ54466.1| 23S rRNA m2A2503 methyltransferase [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355531085|gb|EHH00488.1| 23S rRNA m2A2503 methyltransferase [Paraprevotella clara YIT 11840]
Length = 344
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/342 (40%), Positives = 196/342 (57%), Gaps = 11/342 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
++ L GM+ EL+ A + + LYG + + DE+ ++ +++L+E
Sbjct: 3 DKIALLGMTLAELKAVAGEIGMPSFAARQMAEWLYGKKVAS--IDEMTNISAKNRRLLNE 60
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
+ D S+DGT K L+ G +ETV IP + R T+CVSSQVGC MNC+F
Sbjct: 61 RYTVGCAAPVDGQRSADGTVKYLYRTAAGGYVETVYIP-DGDRATLCVSSQVGCRMNCRF 119
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLS-SEVGSITNVVFMGMGEPLHNVENVIKAANI 290
C TG+ G LTAA+I+ Q L S E ++TNVVFMG GEPL N++NV++A I
Sbjct: 120 CMTGKQGFSGQLTAADILNQ------LYSLPERDTLTNVVFMGQGEPLDNLDNVLRATEI 173
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350
+ + G +SP+++TVST GL LK+FL+ES C LAVSL+ + R +MP Y L
Sbjct: 174 LTADYGYAWSPKRITVSTVGLRKGLKRFLDESECHLAVSLHNPFADQRALLMPAENSYGL 233
Query: 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
++ LR E F + ++ FEY M GVND+ AK L+ L+ G+ C++NLI F+P G
Sbjct: 234 REIVALLR-EYDFTHQRRLSFEYTMFEGVNDTPAHAKELLRLLDGLECRMNLIRFHPVPG 292
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
T++E M+ FR+ L G G +R SRG D AACG L
Sbjct: 293 VDLKGTSEEGMLRFRDYLTGHGLFSTIRASRGQDIFAACGLL 334
>gi|398990012|ref|ZP_10693223.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM24]
gi|399015188|ref|ZP_10717464.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM16]
gi|398109199|gb|EJL99138.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM16]
gi|398145664|gb|EJM34442.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM24]
Length = 382
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKVI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIALLKDIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQL 348
>gi|374702664|ref|ZP_09709534.1| radical SAM protein [Pseudomonas sp. S9]
Length = 382
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 203/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 7 KINLLGLTQQEMEQFFDSIGEKRFRAGQ-IMKWIHHFGIDDF----DAMSNVSKVLREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP R T+CVSSQ GCA++C
Sbjct: 62 KACAEIRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIP-QGARGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI----TNVVFMGMGEPLHNVENVI 285
FC TG+ G LTAAEI+ Q + + ++ I TNVV MGMGEPL N +NV+
Sbjct: 121 SFCSTGKQGFNSDLTAAEIIGQVWISNKSFGTQPAKIDRAVTNVVMMGMGEPLLNFDNVV 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
+ IM+ + G S RKVT+STSG+VP + + + +LA+SL+A D +RN ++PIN
Sbjct: 181 ASMKIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDALRNQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+ + + +VL EY +L VND + A+ +I L++ +PCKINLI
Sbjct: 241 KKYPLEMLLAACKRYVSRLGEKRVLTIEYTLLKDVNDKIEHAEEMIALLKDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 301 FNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDIDAACGQL 348
>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 466
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/304 (43%), Positives = 177/304 (58%), Gaps = 7/304 (2%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D++ L K + L HAE RAL + S+DGT K LF + +G +ETV IP R
Sbjct: 43 DDMSDLAKSLRDKLRGHAEVRALPVITQHISADGTIKWLFDVGNGDAVETVFIP-ESDRG 101
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVF 271
T+C+SSQ GCA+ C+FC TG G R+L EI+ Q FA L S +G I+NVV
Sbjct: 102 TLCISSQAGCAVGCRFCSTGHQGFSRNLKTWEILAQLWFAEHFLRSHLGVSDRVISNVVM 161
Query: 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLN 331
MGMGEPL N ++ A +M+ + G S R+VTVSTSG+VP + + + ALAVSL+
Sbjct: 162 MGMGEPLQNYVALVPALKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLGEDCPVALAVSLH 221
Query: 332 ATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIG 391
A D +R+ ++P+NRKY L L+E R L + FEY ML GVND + AK L+
Sbjct: 222 APEDSLRDNLVPLNRKYPLKELMEACRRYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQ 281
Query: 392 LVQ--GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAAC 449
LV+ G+PCK NLI FNP S +++ + F IL G +R +RGDD AAC
Sbjct: 282 LVKESGVPCKFNLIPFNPFPASGLLRSSNNAVQAFARILVDGGLVTTIRKTRGDDIDAAC 341
Query: 450 GQLG 453
GQL
Sbjct: 342 GQLA 345
>gi|402698607|ref|ZP_10846586.1| hypothetical protein PfraA_02215 [Pseudomonas fragi A22]
Length = 382
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ +++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQPQMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + ++ G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVESGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATADRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +R+ ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRSQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ R + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCRRYMSTLGEKRVLTVEYTMLKDINDHVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|229592444|ref|YP_002874563.1| hypothetical protein PFLU5060 [Pseudomonas fluorescens SBW25]
gi|440741229|ref|ZP_20920678.1| hypothetical protein A986_22863 [Pseudomonas fluorescens BRIP34879]
gi|447918225|ref|YP_007398793.1| hypothetical protein H045_16170 [Pseudomonas poae RE*1-1-14]
gi|259491993|sp|C3K1L7.1|RLMN_PSEFS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|229364310|emb|CAY52051.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
gi|440373210|gb|ELQ09975.1| hypothetical protein A986_22863 [Pseudomonas fluorescens BRIP34879]
gi|445202088|gb|AGE27297.1| hypothetical protein H045_16170 [Pseudomonas poae RE*1-1-14]
Length = 382
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKNTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|409439406|ref|ZP_11266455.1| putative Fe-S containing enzyme [Rhizobium mesoamericanum STM3625]
gi|408748782|emb|CCM77636.1| putative Fe-S containing enzyme [Rhizobium mesoamericanum STM3625]
Length = 410
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 209/374 (55%), Gaps = 32/374 (8%)
Query: 106 VLPK--KGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDE 157
VLP+ G + L G+S E+ +R Q M LW +Y G + H T+
Sbjct: 15 VLPQLDAGQKPSLIGLSREEMGAALREKGVPDKQIKMRVAQLWNWIYVRGVSDFDHMTN- 73
Query: 158 LEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNR 212
+ KD ++ML +H + + S+DGTRK L + IE V IP
Sbjct: 74 ---VAKDMREMLKQHFSIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EE 129
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------L 258
GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR +
Sbjct: 130 GRGTLCISSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTI 189
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ +E ++N+V MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ +
Sbjct: 190 MPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRT 249
Query: 319 LNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG 378
+E LA+SL+A D++R+ ++PIN+KY L LI+ R+ N ++ FEYVML
Sbjct: 250 GDEIGVMLAISLHAVRDDLRDILVPINKKYPLKELIDACRKYPGLSNARRITFEYVMLKD 309
Query: 379 VNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLR 438
VNDS +DAK L+ L++G+P KINLI FNP G+ + + E++ +F + + AG +R
Sbjct: 310 VNDSLEDAKGLVQLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIR 369
Query: 439 LSRGDDQMAACGQL 452
RG D +AACGQL
Sbjct: 370 TPRGRDILAACGQL 383
>gi|388467704|ref|ZP_10141914.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas synxantha BG33R]
gi|388011284|gb|EIK72471.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas synxantha BG33R]
Length = 382
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY ML +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKNTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|423109698|ref|ZP_17097393.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5243]
gi|376381266|gb|EHS94004.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5243]
Length = 388
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 210/356 (58%), Gaps = 16/356 (4%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLNK 163
+P K +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +NK
Sbjct: 15 VPNKDAKINLLDLNRQQMREFFKNMGEKPFRADQVMKWMY-----HYCCDNFDEMTDINK 69
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
+ L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQV
Sbjct: 70 VLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQV 127
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLH 279
GCA+ C+FC T + G R+L +EI+ Q A +++ ++ V ITNVV MGMGEPL
Sbjct: 128 GCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKTTGVRPITNVVMMGMGEPLL 187
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+
Sbjct: 188 NLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRD 247
Query: 340 WIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PIN+KY + + ++R + N +V EYVML VND + A L L++ P
Sbjct: 248 EIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKDTP 307
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
CKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 CKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|299067263|emb|CBJ38460.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum CMR15]
Length = 383
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 188/329 (57%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGAADFGEMTD----LAKSLREKLATRATIQAPAVISDNLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EIV Q
Sbjct: 81 KWLVDVGAGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+STSG+VP + + ++ ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TLSTSGVVPMMDRLSHDLPVALAVSLHASNDALRDVLVPLNKKYPLAELVAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVNDS + A+ L+ +V +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|392309331|ref|ZP_10271865.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
citrea NCIMB 1889]
Length = 378
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 191/326 (58%), Gaps = 12/326 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W +G D + +++ +NK K LS E A + +SDGT K
Sbjct: 30 FRADQ-VMKWIYHFGIDDF----EQMSNINKKLKAKLSADCEIVAPEISVRQEASDGTIK 84
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+L+ G +ETV IP ++ R T+CVSSQVGCA+ C FC T + G R+L +EI+ Q
Sbjct: 85 YALVLEGGQEVETVWIP-DKDRATLCVSSQVGCALECTFCSTAQQGFNRNLKVSEIIGQV 143
Query: 253 VFARRLLSSEVGS-----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
+ + G +TNVV MGMGEPL NV NV+ A +M+ + S R+VT+S
Sbjct: 144 WRVAKDIGLHDGDSTKRPVTNVVMMGMGEPLLNVNNVVPAMELMMDDWAFGLSKRRVTLS 203
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH-FKNN 366
TSG+VP L + ALA+SL+A T+++R+ ++PIN+KY + + R + K N
Sbjct: 204 TSGVVPALDILKERIDVALAISLHAPTNDLRDVLVPINKKYPIEEFLAACRRYIDGSKAN 263
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
V EYVML G+NDS D A L+ +++G P KINLI FNP G+++ +++ ++ F
Sbjct: 264 KDVTIEYVMLQGINDSTDQAHELVKVLKGTPSKINLIPFNPFPGNEYGRSSNSRIDRFSK 323
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQL 452
+L AG T +R +RGDD AACGQL
Sbjct: 324 VLQAAGLTCIVRRTRGDDIDAACGQL 349
>gi|423016749|ref|ZP_17007470.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans AXX-A]
gi|338780177|gb|EGP44592.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans AXX-A]
Length = 384
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 197/358 (55%), Gaps = 21/358 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKML 169
R+ L G+ + L + V +P +A L W G D + TD L +DF+ L
Sbjct: 5 ERINLLGLDASALSELVGQWGGKPFRARQLQRWMHQRGADSFDAMTD----LARDFRGQL 60
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ AL++ SSDGTRK LF + G IETV IP + R T+C+SSQ GC +NC
Sbjct: 61 ASRCVIEALAVNTEQRSSDGTRKWLFDVGQGNAIETVFIPED-DRGTLCISSQAGCVVNC 119
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------------ITNVVFMGMG 275
+FC TG G R+L +EI+ Q +A+R+L +++G+ I+NVV MGMG
Sbjct: 120 RFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVISNVVMMGMG 179
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + V+ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A D
Sbjct: 180 EPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPND 239
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++P+N+KY L L+ L F + FEY ML G+ND+ A+ LI + +
Sbjct: 240 ALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHARELINIARQ 299
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I CK+NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 300 IRCKLNLIPFNPFPASGLKRSPTARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLA 357
>gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
Length = 392
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + TD +NK + L AE RA + D SSDGT K
Sbjct: 48 FRADQ-VMKWMYHYCCDDFNQMTD----INKVLRGKLQAIAEIRAPEVVDEQRSSDGTIK 102
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
++D G +ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 103 WAILVD-GQRVETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 160
Query: 253 VFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + + ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT+ST
Sbjct: 161 WRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLST 220
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + + ALA+SL+A TDE+RN IMPIN+KY + + +R L N
Sbjct: 221 SGVVPALDKLGDMIDVALAISLHAPTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQ 280
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +ND + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 281 GRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 340
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G T +R +RGDD AACGQL
Sbjct: 341 VLMEYGFTTIVRKTRGDDIDAACGQLA 367
>gi|424772058|ref|ZP_18199173.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
gi|421939046|gb|EKT96577.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
Length = 384
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 210/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV+ K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVITKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRDKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|419683053|ref|ZP_14211764.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1213]
gi|380660049|gb|EIB76005.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1213]
Length = 356
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 189/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH G + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|410663508|ref|YP_006915879.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
gi|409025865|gb|AFU98149.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
Length = 385
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 211/365 (57%), Gaps = 20/365 (5%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G+S ++++ + S FR Q L +L D DE+ ++KD + L +
Sbjct: 16 LLGLSQSKMEAFFESIGEKRFRAQQVLKWIHQLGVVDF-----DEMTNISKDLRNKLKDV 70
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + L S DGTRK L ++ G +ETV IP + R T+CVSSQ+GC+++C FC
Sbjct: 71 AEIRFPEVMKQLDSVDGTRKFLIKVEGGSAVETVFIP-DGERGTLCVSSQIGCSLDCSFC 129
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-----SITNVVFMGMGEPLHNVENVIKA 287
TG+ G R LTAAEI+ Q A + ++G +TNVV MGMGEPL N +NV+ A
Sbjct: 130 ATGKQGFNRDLTAAEIIAQVWIAAKSFG-QLGVNGPRKVTNVVLMGMGEPLLNFDNVVDA 188
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
++M+H+ S R+VT+STSG+VP L + ++ LA+SL+A D +RN ++PIN+K
Sbjct: 189 MSLMMHDNCYGISKRRVTLSTSGVVPALDRLGEYTDACLAISLHAPNDALRNELVPINKK 248
Query: 348 YKLGLLIETLREELHF--KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
Y + +L+++ + + + K+ EY ++ VND + A L L++ +P KINLI F
Sbjct: 249 YPIAMLLDSAKRYIEQLPDTHRKITIEYTLIDHVNDRPEHAHELAELLRDVPVKINLIPF 308
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRV 465
NP S + ++ + F+ IL +G +R +RGDD AACGQL G++ L R
Sbjct: 309 NPFSQSDYKRVSNNALRRFQTILIESGYVTTVRTTRGDDIDAACGQLA--GSVN-DLTRR 365
Query: 466 PEKFQ 470
E+++
Sbjct: 366 AERYR 370
>gi|422013650|ref|ZP_16360269.1| ribosomal RNA large subunit methyltransferase N [Providencia
burhodogranariea DSM 19968]
gi|414102688|gb|EKT64279.1| ribosomal RNA large subunit methyltransferase N [Providencia
burhodogranariea DSM 19968]
Length = 393
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 213/362 (58%), Gaps = 21/362 (5%)
Query: 104 INVLPKKGS-RVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE- 159
I+V P+ S ++ L ++ +++++ +P +A +M W I+ +C D+ +
Sbjct: 16 ISVTPENNSQKINLLDLNRKQMREFFAQMGEKPFRADQVMKW-------IYHYCYDDFDQ 68
Query: 160 --GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
+NK + L E AE RA + + SSDGT K + G +ETV IP + R T+
Sbjct: 69 MTDINKVLRAKLKEVAEIRAPEVAEEQRSSDGTIKWAITVG-GQQVETVYIPED-DRATL 126
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMG 273
CVSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MG
Sbjct: 127 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMG 186
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A
Sbjct: 187 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAP 246
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIG 391
TD+VR+ I+PIN+KY + + ++R L N+ +V EYVML +NDS + A +L
Sbjct: 247 TDDVRDEIVPINKKYNIETFLSSVRRYLSKSNANSGRVTVEYVMLDHINDSIEQAHQLAE 306
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
++ P KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQ
Sbjct: 307 CLKDTPSKINLIPWNPFPGAPYNRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQ 366
Query: 452 LG 453
L
Sbjct: 367 LA 368
>gi|241662752|ref|YP_002981112.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
gi|240864779|gb|ACS62440.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
Length = 383
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 187/329 (56%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGASDFGEMTD----LAKSLREKLATRANIQAPAVITDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 81 KWLVDVGQGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPALALMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
TVSTSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVND+ + A+ L+ +V +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|414176852|ref|ZP_11431081.1| ribosomal RNA large subunit methyltransferase N [Afipia broomeae
ATCC 49717]
gi|410887005|gb|EKS34817.1| ribosomal RNA large subunit methyltransferase N [Afipia broomeae
ATCC 49717]
Length = 404
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 201/355 (56%), Gaps = 21/355 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G+S EL Q + Q M LW +Y A ++ ++KD + L +
Sbjct: 31 LVGLSREELAQRLGEIGVAEKQRKMRVQQLWHWMYVRG--AQSFADMTNVSKDMRAELEQ 88
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLV------IETVVIPCNRGRTTVCVSSQVGC 225
H + S+DGTRK L L G +E V IP R T+CVSSQVGC
Sbjct: 89 HFTVDRPEVVAEQISNDGTRKWLLRLPSGHASERPHEVECVYIP-ETDRGTLCVSSQVGC 147
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEP 277
+NC FC+TG L R+LTA EIV Q + AR L+ + +TNVV MGMGEP
Sbjct: 148 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWIDRETPNGNRLVTNVVMMGMGEP 207
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L+N + V A I+ +G+ S R++T+STSG+VP + + +E LA+SL+A DE+
Sbjct: 208 LYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIARTGDEIGVMLAISLHAVRDEL 267
Query: 338 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
RN ++P+N+KY + L++ R N+ ++ FEYVML GVNDS DDAK L+ L++GIP
Sbjct: 268 RNELVPLNKKYPIKELLDACRAYPGSSNSRRITFEYVMLKGVNDSLDDAKLLVKLLKGIP 327
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
KINLI FNP G+++ + E++ +F + AG + +R RG D +AACGQL
Sbjct: 328 AKINLIPFNPWPGTRYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 382
>gi|399003840|ref|ZP_10706489.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM18]
gi|398121584|gb|EJM11207.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM18]
Length = 382
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEIRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ +PCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNVPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|420242979|ref|ZP_14746955.1| 23S rRNA methyltransferase [Rhizobium sp. CF080]
gi|398064376|gb|EJL56062.1| 23S rRNA methyltransferase [Rhizobium sp. CF080]
Length = 412
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 202/365 (55%), Gaps = 26/365 (7%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFK 166
G++ L G++ ++ ++ Q M LW LY + D + + KD +
Sbjct: 24 GTKPSLIGLTREDMAAALKEKGVSEKQVRMRVSQLWHWLYIRGVSDF--DAMTNVAKDMR 81
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSS 221
+ML H + + S+DGTRK L + +ETV IP GR T+C+SS
Sbjct: 82 EMLKAHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEVETVYIP-EEGRGTLCISS 140
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------------IT 267
QVGC++ C FC+TG L R+LTA EI+ Q + AR L G+ +T
Sbjct: 141 QVGCSLTCSFCHTGTQRLVRNLTAEEILAQLLLARDRLGDFPGTDTPPGAFVPTGDRKVT 200
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N E+V A I GL S R+VT+STSG+VP++ + +E LA
Sbjct: 201 NIVMMGMGEPLYNFESVKTALLIATDGDGLSLSKRRVTLSTSGVVPEIYRTGDEIGVMLA 260
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A D++R+ ++PIN+KY L LIE R N ++ FEYVML VNDS +DAK
Sbjct: 261 ISLHAVRDDLRDMLVPINKKYPLKELIEACRNYPGLSNARRITFEYVMLKDVNDSLEDAK 320
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
LI L++G+P KINLI FNP G+ + + ++ +F + + AG +R RG D +A
Sbjct: 321 ALIQLLKGVPAKINLIPFNPWPGTNYQCSEWAQIEKFADFINQAGYASPIRTPRGRDILA 380
Query: 448 ACGQL 452
ACGQL
Sbjct: 381 ACGQL 385
>gi|406941482|gb|EKD73958.1| hypothetical protein ACD_45C00125G0007 [uncultured bacterium]
Length = 368
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 198/348 (56%), Gaps = 15/348 (4%)
Query: 113 RVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGD-DIWAHCTDELEGLNKDFKKM 168
++ L G+S E++ + + ++R Q L W G DI A + L+K ++
Sbjct: 9 KINLLGLSRKEMEAFCITLGEKSYRATQILK-WIHFQGVCDIQA-----MSNLSKSLREK 62
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
+++ AE + TS DGT K + L DG IE V IP + R T+CVSSQVGC +N
Sbjct: 63 IADLAEIHPPEVAYENTSPDGTHKWILRLTDGNCIEAVFIP-EKTRGTLCVSSQVGCTLN 121
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGSITNVVFMGMGEPLHNVENV 284
C FC TG+ G R+LT EI+ Q A R + +ITNVV MGMGEPL N ENV
Sbjct: 122 CDFCSTGKQGFSRNLTTDEIIGQVWLAVRHFAKNHRVHDHAITNVVMMGMGEPLLNFENV 181
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + S R+VT+ST+G+VP + + N S+ ALAVSL+A DE+RN ++P+
Sbjct: 182 VNAMDIMLDDFAYGLSKRRVTLSTAGVVPAMYELRNVSDVALAVSLHAPNDELRNVLVPL 241
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
N+KY L L+ +E V EYVMLAG+ND+ + A++LI L+ GI K+NLI
Sbjct: 242 NKKYPLKELMTACKEYFKEDKRRYVTMEYVMLAGINDTDEHAQQLIRLLNGIRAKVNLIP 301
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP + + + + FR L AG R +RGD AACGQL
Sbjct: 302 FNPFPNTSYQRSDAPTIDRFRETLMHAGINAITRKTRGDAIDAACGQL 349
>gi|449146973|ref|ZP_21777724.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
CAIM 602]
gi|449077467|gb|EMB48450.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
CAIM 602]
Length = 373
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 194/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + S+DGT
Sbjct: 28 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSEAQYSADGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMRVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A DE+R+ IMPIN ++ + + T+R + N
Sbjct: 201 TSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|26987586|ref|NP_743011.1| radical SAM enzyme, Cfr family [Pseudomonas putida KT2440]
gi|148546124|ref|YP_001266226.1| radical SAM protein [Pseudomonas putida F1]
gi|386010513|ref|YP_005928790.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
BIRD-1]
gi|395447288|ref|YP_006387541.1| radical SAM enzyme, Cfr family [Pseudomonas putida ND6]
gi|81586431|sp|Q88PK0.1|RLMN_PSEPK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829824|sp|A5VYT2.1|RLMN_PSEP1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24982262|gb|AAN66475.1|AE016276_10 conserved hypothetical protein TIGR00048 [Pseudomonas putida
KT2440]
gi|148510182|gb|ABQ77042.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas putida F1]
gi|313497219|gb|ADR58585.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
BIRD-1]
gi|388561285|gb|AFK70426.1| radical SAM enzyme, Cfr family [Pseudomonas putida ND6]
Length = 381
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 204/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFDSIGEKRFRAGQ-VMKWIHHFGVSDFAAMTN----VGKVLREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRPPEVVSEDISADGTRKWVIRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|383784040|ref|YP_005468608.1| radical SAM family protein [Leptospirillum ferrooxidans C2-3]
gi|383082951|dbj|BAM06478.1| putative radical SAM family protein [Leptospirillum ferrooxidans
C2-3]
Length = 372
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 188/316 (59%), Gaps = 22/316 (6%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRG-R 214
D ++ L+K ++ LS + ++L S DGT+KILF L D +IE+V+IP RG R
Sbjct: 42 DLMKNLSKGLQEALSSQVSLTLPKVLNVLESKDGTKKILFQLKDEQMIESVIIP--RGDR 99
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS---EVGSITN--- 268
T+C+SSQVGC + C+FC T MGL R+LT EIV Q + A ++L + GS +N
Sbjct: 100 ATLCISSQVGCGIGCKFCRTAEMGLIRNLTMGEIVGQVIMANKILKENPIKDGSTSNLED 159
Query: 269 ---------VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319
+VFMGMGEPL N++ VI + + GL SPR++TVSTSGL ++ + L
Sbjct: 160 QPLLNRVNHIVFMGMGEPLANLDQVINSIRTLTSSDGLGMSPRRITVSTSGLPSKIIE-L 218
Query: 320 NESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 377
+S LAVSL A D R +MPINR Y + +++ +R+ L K +V FEYV+L+
Sbjct: 219 GQSGIPVNLAVSLTAADDPTREKLMPINRHYPIRAILDAIRQ-LPLKKRQRVTFEYVLLS 277
Query: 378 GVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 437
GVND +DAK+L L+ K+NLI FNP+ GS F + + ++ F+ IL +
Sbjct: 278 GVNDRPEDAKKLARLLAPFKSKVNLIPFNPYEGSPFVSPSKDDVLLFQKILLEKMVATTI 337
Query: 438 RLSRGDDQMAACGQLG 453
R SRGDD + ACGQL
Sbjct: 338 RQSRGDDILGACGQLA 353
>gi|33151554|ref|NP_872907.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
ducreyi 35000HP]
gi|81423849|sp|Q7VNZ4.1|RLMN_HAEDU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|33147774|gb|AAP95296.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 393
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 215/359 (59%), Gaps = 14/359 (3%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEG 160
+ +V K +V L M+ E+++++ + +P +A LM W +G+D + D +
Sbjct: 16 DFSVQHSKSEKVNLMNMTRQEMREFLANLGEKPFRADQLMKWIYHFGEDEF----DNMSN 71
Query: 161 LNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVS 220
+NK ++ L + AE +A ++ SSDGT K + + IETV IP R T+CVS
Sbjct: 72 INKVLREKLKKVAEIKAPAIAIEQRSSDGTIKWAMQVGNQQ-IETVYIP-EGDRATLCVS 129
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGE 276
SQVGCA+ C+FC T + G R+LT +EI+ Q A +++ + V ITNVV MGMGE
Sbjct: 130 SQVGCALECKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGITGVRPITNVVMMGMGE 189
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N+ NVI A IM+ + S R+VT+ST+G+VP L + + ALA+SL+A +E
Sbjct: 190 PLLNMNNVIPAMQIMLDDFAYGLSKRRVTLSTAGVVPALDLMREKIDVALAISLHAPNNE 249
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
+RN IMPIN+KY + +L++++ + L N+ KV EYV+L VND + A +L +++
Sbjct: 250 LRNEIMPINKKYNIKMLMDSVAKYLAVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLK 309
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 310 NTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLA 368
>gi|157164532|ref|YP_001467818.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
concisus 13826]
gi|205829689|sp|A7ZGB0.1|RLMN_CAMC1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|112801745|gb|EAT99089.1| radical SAM enzyme, Cfr family [Campylobacter concisus 13826]
Length = 381
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 203/348 (58%), Gaps = 22/348 (6%)
Query: 119 MSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRAL 178
+S EL++ V S +FR Q +++ +Y + A ++ L KD ++ L+E L
Sbjct: 7 LSIEELKELV-SPSFRATQ---IYEWVYKKN--ATEFSQMLNLPKDMRQDLAEKFYLDPL 60
Query: 179 SLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR------------GRTTVCVSSQVGCA 226
SSDG+ K LF L DGL IE+V++P R T+CVSSQVGC
Sbjct: 61 KCVKFEQSSDGSIKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTICVSSQVGCK 120
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286
M C FC T + GL R+LTA EIV Q ++ +R NVV+MGMGEPL N+ NV K
Sbjct: 121 MGCAFCLTAKGGLVRNLTAGEIVGQILWIKRENKIPYERRINVVYMGMGEPLDNLTNVSK 180
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPI 344
A I+ +GL SPR+ TVSTSGL Q+K+ L E + LA+SL+A T+E+R+ +MPI
Sbjct: 181 AIKILALNEGLAISPRRQTVSTSGLGSQIKK-LGEMDLGVLLAISLHAVTNELRSRLMPI 239
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
N+ Y + +++ +R +V+FEY+++ +NDS DAK+L+ L+ GI K+NLI
Sbjct: 240 NKAYNIEAVMDAVRG-FPIDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLHGIKAKVNLIY 298
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNPH GS+F M++F+ L G T +R S+G D AACGQL
Sbjct: 299 FNPHEGSEFGRPELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQL 346
>gi|419621493|ref|ZP_14154745.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23216]
gi|380601803|gb|EIB22109.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 23216]
Length = 356
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/334 (38%), Positives = 194/334 (58%), Gaps = 21/334 (6%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q + Y +D ++ L KD + L+++ F + S DG+ K
Sbjct: 23 FRVKQIYQWIYQKYANDF-----SDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIK 77
Query: 193 ILFMLDDGLVIETVVIP------------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
LF L DGL +E+V++P + R T+CVSSQVGC C FC T + GLK
Sbjct: 78 YLFELIDGLRVESVLLPMKEEKIDTEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLK 137
Query: 241 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS 300
R+L+A EIV Q ++ ++ + N+V+MGMGEPL N++NV KA I+ +GL S
Sbjct: 138 RNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAIS 197
Query: 301 PRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
PR+ T+STSGL Q+K+ L + N LA+SL+A DE+R +MPIN+ Y + +++ +R
Sbjct: 198 PRRQTISTSGLAKQIKE-LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR 256
Query: 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
E +V+FEY+++ G+ND + AK L+ L+ GI K+NLI FNPH GS + +
Sbjct: 257 -EFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSL 315
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
E I+F+++L+ G +R S+G D AACGQL
Sbjct: 316 ENAIKFQDLLSNKGVICTIRESKGLDISAACGQL 349
>gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|424808315|ref|ZP_18233717.1| hypothetical protein SX4_2236 [Vibrio mimicus SX-4]
gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|342324852|gb|EGU20633.1| hypothetical protein SX4_2236 [Vibrio mimicus SX-4]
Length = 373
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 194/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + S+DGT
Sbjct: 28 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMRVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A DE+R+ IMPIN ++ + + T+R + N
Sbjct: 201 TSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|419657783|ref|ZP_14188431.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-1]
gi|380634331|gb|EIB52218.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-1]
Length = 356
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 189/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIATIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH G + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|424782345|ref|ZP_18209192.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
showae CSUNSWCD]
gi|421959665|gb|EKU11273.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
showae CSUNSWCD]
Length = 363
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 191/332 (57%), Gaps = 18/332 (5%)
Query: 135 PGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKIL 194
P +A +++ LY + A DE+ L KD + L++ L S+DG+ K L
Sbjct: 19 PFRAKQIFEWLYKKN--ATSFDEMLNLPKDLRANLAQQFYLDPLKCVKFEQSADGSIKYL 76
Query: 195 FMLDDGLVIETVVIP------------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
F L DGL IE+V++P R T+CVSSQVGC M C FC TG+ GL R+
Sbjct: 77 FELKDGLRIESVLLPMKEELSDKNGEVARHARYTICVSSQVGCRMGCSFCLTGKSGLTRN 136
Query: 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
LT EIV Q ++ +R NVV+MGMGEPL N+ENV KA I+ GL +PR
Sbjct: 137 LTPGEIVGQILWIKRENKIPYERRVNVVYMGMGEPLDNLENVSKAIKILKENDGLAIAPR 196
Query: 303 KVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
+ TVSTSGL Q+K+ L E + LA+SL+A T+E+R+ +MPIN YK+ ++E +R
Sbjct: 197 RQTVSTSGLGSQIKK-LGEMDLGVLLAISLHAVTNELRSKLMPINNAYKIESVMEAVRG- 254
Query: 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 420
+V+FEY+++ +ND DAK+L+ L+ GI K+NLI FNPH GS++
Sbjct: 255 FPIDMRKRVMFEYLVIKDMNDGIKDAKKLVSLLHGIKAKVNLIYFNPHEGSEYGRPNTAD 314
Query: 421 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
M F+ L G T +R S+G D AACGQL
Sbjct: 315 MEAFQTYLRDHGVTCTIRQSKGLDISAACGQL 346
>gi|393764186|ref|ZP_10352798.1| ribosomal RNA large subunit methyltransferase N [Alishewanella agri
BL06]
gi|392604816|gb|EIW87715.1| ribosomal RNA large subunit methyltransferase N [Alishewanella agri
BL06]
Length = 375
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 205/349 (58%), Gaps = 18/349 (5%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
V L ++ +++Q++ S +P +A +M W I+ C D+ + +NK + +
Sbjct: 8 VNLLDLTRSQMQEFFVSLGEKPFRADQVMKW-------IYHFCVDDFDKMTNINKKLRDL 60
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L +A + S+DGT K + L+ G +ETV IP + R T+CVSSQVGCA++
Sbjct: 61 LKARCVIKAPVVATRQDSADGTIKFVMALEGGQEVETVWIP-EKDRRTLCVSSQVGCALD 119
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENV 284
C FC T + G R+L+ +EI+ Q +++ S + G +TNVV MGMGEPL N+ NV
Sbjct: 120 CSFCSTAQQGFNRNLSVSEIIGQVWRVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNV 179
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +M+ + G S R+VT+STSG+VP L + + ALA+SL+A + +R+ ++P+
Sbjct: 180 VPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPV 239
Query: 345 NRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
N+KY + + R + H K N KV EYVML G+NDS D A L ++ P KINLI
Sbjct: 240 NKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKDTPSKINLI 299
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP+ GS + +++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 300 PFNPYPGSPYKRSSNSRIDRFNKVLQEHGFTVMVRKTRGDDIDAACGQL 348
>gi|337755452|ref|YP_004647963.1| ribosomal RNA large subunit methyltransferase N [Francisella sp.
TX077308]
gi|336447057|gb|AEI36363.1| Ribosomal RNA large subunit methyltransferase N [Francisella sp.
TX077308]
Length = 370
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/314 (41%), Positives = 187/314 (59%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D++ L K+ + L E +E + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDKMTDLGKNLRNKLQETSEIFIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP + GR T+CVSSQVGC +NC FC TG+ G R+L++AE++ Q A R LS G
Sbjct: 95 VFIPED-GRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSSAEVISQLWIAARTLSKNNGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
S+TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFSVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A TD +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHAATDSLRNEIVPINKKYNIDELLEACKLYAEKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLV--QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L+ + +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEGLVELLRSRNVPAKINLIPFNPYPGTPYRKPSNNRIHRFKEYLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|365154435|ref|ZP_09350868.1| ribosomal RNA large subunit methyltransferase N [Campylobacter sp.
10_1_50]
gi|363650273|gb|EHL89364.1| ribosomal RNA large subunit methyltransferase N [Campylobacter sp.
10_1_50]
Length = 381
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 204/348 (58%), Gaps = 22/348 (6%)
Query: 119 MSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRAL 178
+S EL++ V S +FR Q +++ +Y + A ++ L KD ++ L+E L
Sbjct: 7 LSIEELKELV-SPSFRATQ---IYEWVYKKN--ATEFSQMLNLPKDMRQDLTEKFYLDPL 60
Query: 179 SLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR------------GRTTVCVSSQVGCA 226
SSDG+ K LF L DGL IE+V++P R TVCVSSQVGC
Sbjct: 61 KCVKFEQSSDGSIKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTVCVSSQVGCK 120
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286
M C FC T + GL R+LTA EIV Q ++ +R + NVV+MGMGEPL N+ NV K
Sbjct: 121 MGCAFCLTAKGGLVRNLTAGEIVGQILWIKRGNNIPYERRINVVYMGMGEPLDNLANVSK 180
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPI 344
A I+ +GL SPR+ TVSTSGL Q+K+ L E + LA+SL+A T+E+R+ +MPI
Sbjct: 181 AIKILALNEGLAISPRRQTVSTSGLGSQIKK-LGEMDLGVLLAISLHAVTNELRSRLMPI 239
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
N+ Y + +++ +R +V+FEY+++ +NDS DAK+L+ L+ GI K+NLI
Sbjct: 240 NKAYNIEAVMDAVRG-FPIDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLHGIKAKVNLIY 298
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNPH GS+F M++F+ L G T +R S+G D AACGQL
Sbjct: 299 FNPHEGSEFGRPELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQL 346
>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
Length = 388
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/350 (41%), Positives = 203/350 (58%), Gaps = 15/350 (4%)
Query: 112 SRVLLKGMSFTELQQW---VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
++V L G+S +L+ + + FR Q +M W G +A + L K ++
Sbjct: 15 AKVNLLGLSRQQLEDFFTDLGEKRFR-AQQVMKWMHHQGVIDFA----AMSNLGKGLREK 69
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L A + D S+DGTRK + G ++E V+IP GR T+CVSSQVGC+++
Sbjct: 70 LETLATITPPEIADQQDSADGTRKWAVRVAGGALVEAVLIP-EAGRATLCVSSQVGCSLD 128
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS---SEVGSI-TNVVFMGMGEPLHNVENV 284
C+FC TG+ G +R LTAAEI+ Q A S S G I TNVV MGMGEPL N +NV
Sbjct: 129 CKFCSTGKQGFQRDLTAAEIIGQVWLAINSYSGWQSGKGRIVTNVVMMGMGEPLLNFDNV 188
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A ++M + S RKVT+STSG+VP L + S+ +LAVSL+A DE+RN I+PI
Sbjct: 189 VSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRLAEFSDVSLAVSLHAPNDEIRNKIVPI 248
Query: 345 NRKYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NR+Y + L+++ + + +++ K V EY +LAGVND + A+ L L++ PCKINL
Sbjct: 249 NRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELSTLLKDFPCKINL 308
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FN S F + + F +L AG V +R +RGDD AACGQL
Sbjct: 309 IPFNHFPNSGFDRPSGNAVSRFWQVLVDAGFIVTVRSTRGDDIDAACGQL 358
>gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-7]
gi|123326715|sp|Q0HX60.1|RLMN_SHESR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7]
Length = 373
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 200/342 (58%), Gaps = 14/342 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 28 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISSYQKSTDGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAIHVGEGQEVETVYIPED-DRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + + G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFAKDTGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N
Sbjct: 202 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 261
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
Length = 398
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + TD +NK + L AE RA + S+DGT K
Sbjct: 54 FRADQ-VMKWMYHYCYDDFEQMTD----INKALRAKLQRVAEIRAPEVAQEQRSADGTIK 108
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 109 WAITVGDQQV-ETVYIP-EADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 166
Query: 253 VFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ S G+ ITNVV MGMGEPL N+ NV+ A +IM+ + G S R+VT+ST
Sbjct: 167 WRAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLST 226
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + + ALA+SL+A TD++RN I+PINRKY + + +R L N
Sbjct: 227 SGVVPALDKLGDMIDVALAISLHAPTDDIRNEIVPINRKYNIETFLAAVRRYLDKSKANG 286
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 287 GRVTVEYVMLDHINDSVEQAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 346
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G T +R +RGDD AACGQL
Sbjct: 347 VLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
Length = 398
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 206/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
+++ L ++ +L+++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 AKINLLDLNRQQLREFFAELGEKPFRADQVMKWMY-----HYCCDDFEQMTDINKVLRNK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 85 LQSIAEIRAPEVAEEQRSADGTIKWAIKVGDQQV-ETVYIP-EADRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ ++ + ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAQKVTGQRPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+ I+PI
Sbjct: 203 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPI 262
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + ++R L N +V EYVML +NDS DDA +L +++ PCKINL
Sbjct: 263 NRKYNIETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLAEVLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|116254249|ref|YP_770087.1| hypothetical protein RL4522 [Rhizobium leguminosarum bv. viciae
3841]
gi|123384474|sp|Q1MAN2.1|RLMN_RHIL3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|115258897|emb|CAK10006.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 408
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L GMS E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 25 LIGMSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTN----VAKDMREML 80
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 81 KQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCISSQVG 139
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 199
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 259
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LIE R N ++ FEYVML VNDS +DAK LI
Sbjct: 260 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379
Query: 451 QL 452
QL
Sbjct: 380 QL 381
>gi|430005448|emb|CCF21249.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Rhizobium sp.]
Length = 412
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 200/365 (54%), Gaps = 26/365 (7%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFK 166
G++ L G++ ++ ++ Q M LW LY + D + + KD +
Sbjct: 24 GTKPSLIGLTREQMADALKEKGVPEKQVRMRVSQLWHWLYIRGVSDF--DAMTNVAKDMR 81
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSS 221
+ML EH + + S+DGTRK L + +ETV IP GR T+C+SS
Sbjct: 82 QMLKEHFTIARPEVVEEQVSNDGTRKWLLRFPPRGAGRPVEVETVYIP-EEGRGTLCISS 140
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSIT 267
QVGC++ C FC+TG L R+LTA EI+ Q + AR ++ S IT
Sbjct: 141 QVGCSLTCSFCHTGTQRLVRNLTAEEILAQLLLARDRLGDFPDRDVPQGAMIPSSDRKIT 200
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+V MGMGEPL+N E V A I GL S R++T+STSG+VP++ + E LA
Sbjct: 201 NIVMMGMGEPLYNFEAVKTALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGEEIGVMLA 260
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A DE+R+ ++PIN+KY L LIE R N ++ FEYVML VNDS +DAK
Sbjct: 261 ISLHAVRDELRDMLVPINKKYPLKELIEACRAYPGLSNARRITFEYVMLKDVNDSLEDAK 320
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
L+ L++G+P KINLI FNP G+ + + + +F + + AG +R RG D +A
Sbjct: 321 ELVKLLKGVPAKINLIPFNPWPGTNYQCSDWATIEKFADFINQAGYASPIRTPRGRDILA 380
Query: 448 ACGQL 452
ACGQL
Sbjct: 381 ACGQL 385
>gi|407691681|ref|YP_006816470.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
suis H91-0380]
gi|407387738|gb|AFU18231.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
suis H91-0380]
Length = 393
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 213/367 (58%), Gaps = 14/367 (3%)
Query: 95 CSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWA 152
C+ N V K ++ L ++ E+++ +P +A LM W +G+D +
Sbjct: 8 CASEIQAMNAAVQHPKSEKINLMNLTRQEMRELFAEMGEKPFRADQLMKWIYHFGEDNF- 66
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR 212
D + +NK ++ L + AE +A + SSDGT K + D IETV IP
Sbjct: 67 ---DNMSNINKVLREKLKQIAEIKAPEVSVEQRSSDGTIKWAMQVGDQQ-IETVYIP-EA 121
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITN 268
R T+CVSSQVGCA+ C+FC T + G R+LT +EI+ Q A +++ + V ITN
Sbjct: 122 DRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITN 181
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL N+ NVI A IM+ + S R+VT+ST+G+VP L + + ALA+
Sbjct: 182 VVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAI 241
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDA 386
SL+A DE+R+ IMPIN+KY + +L++++ + E+ N+ KV EYV+L VND + A
Sbjct: 242 SLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHA 301
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 302 HQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 361
Query: 447 AACGQLG 453
AACGQL
Sbjct: 362 AACGQLA 368
>gi|419588870|ref|ZP_14124686.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
317/04]
gi|380569152|gb|EIA91601.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
317/04]
Length = 356
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 188/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L+KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLSKDLRLELAQTYHFTPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDDEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|115522068|ref|YP_778979.1| radical SAM protein [Rhodopseudomonas palustris BisA53]
gi|122298191|sp|Q07VN5.1|RLMN_RHOP5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|115516015|gb|ABJ03999.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris BisA53]
Length = 403
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 197/342 (57%), Gaps = 26/342 (7%)
Query: 132 AFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
A R +A LW +Y G +A T ++K+ + L+EH + S+DG
Sbjct: 45 AQRKMRAQQLWHWIYVRGATDFAQMT----SISKELRAQLAEHFTVDRPEVVTEQISNDG 100
Query: 190 TRKILFMLDDGLV------IETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
TRK L L G +E V IP R T+CVSSQVGC +NC FC+TG L R+L
Sbjct: 101 TRKWLLRLPSGQAGERAHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQKLVRNL 159
Query: 244 TAAEIVEQAVFARRLL---------SSEVGS----ITNVVFMGMGEPLHNVENVIKAANI 290
TA EIV Q + A+ L + + G ITNVV MGMGEPL+N E V A I
Sbjct: 160 TAGEIVGQVMVAKDRLGDWPMAVASTQDAGENNRLITNVVMMGMGEPLYNFEAVRDALLI 219
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350
+ +G+ S R++T+STSG+VP + + +E LA+SL+A DE+RN ++P+N+KY L
Sbjct: 220 VSDNEGIGLSRRRITLSTSGVVPNIFRTGDEIGVMLAISLHAVRDELRNELVPLNKKYPL 279
Query: 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCG 410
L++ R+ N ++ FEYVML GVNDS DDAK L+ L++G+P KINLI FNP G
Sbjct: 280 KELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKGVPAKINLIPFNPWPG 339
Query: 411 SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + + +++ +F + AG + +R RG D +AACGQL
Sbjct: 340 SAYQCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQL 381
>gi|226946070|ref|YP_002801143.1| hypothetical protein Avin_40320 [Azotobacter vinelandii DJ]
gi|226720997|gb|ACO80168.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 381
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 199/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ +L+ + S FR GQ +M W +G D + D + + K ++ L
Sbjct: 9 LLGLTQPQLESFFESIGEKRFRAGQ-VMKWIHHFGVDDF----DAMSNIGKALREKLKAC 63
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S DGTRK + + G +ETV IP GR T+CVSSQ GC+++C FC
Sbjct: 64 AEIRGPEVVSQDISGDGTRKWVVRVASGSCVETVYIP-QAGRGTLCVSSQAGCSLDCSFC 122
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVIKAA 288
TG+ G LTAAEI+ Q A + + G +ITNVV MGMGEPL N +N + A
Sbjct: 123 STGKQGFNSDLTAAEIIGQVWIANKSFGTVPGKIDRAITNVVMMGMGEPLMNFDNAVAAM 182
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
IM+ + G S RKVT+STSG+ P + + + +LA+SL+A DE+RN ++PINRKY
Sbjct: 183 QIMMDDLGYGISKRKVTLSTSGVAPMIDELGKIIDVSLALSLHAPNDELRNRLVPINRKY 242
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +++ R + +VL EY +L VND + A +++ L++ +PCKINLI FNP
Sbjct: 243 PLAQVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAAQMVELLRDVPCKINLIPFNP 302
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F+++L AG V +R +RG+D AACGQL
Sbjct: 303 FPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDIDAACGQL 347
>gi|440228223|ref|YP_007335314.1| radical SAM enzyme, Cfr family [Rhizobium tropici CIAT 899]
gi|440039734|gb|AGB72768.1| radical SAM enzyme, Cfr family [Rhizobium tropici CIAT 899]
Length = 411
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 202/360 (56%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L GM+ E+ ++ Q M LW +Y + D + ++KD ++ML
Sbjct: 29 LIGMTREEMGAALKEKGVADKQIKMRVSQLWNWIYVRGVSDF--DAMANVSKDMREMLKT 86
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S+DGTRK L + IE V IP GR T+C+SSQVGC+
Sbjct: 87 HFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCISSQVGCS 145
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V M
Sbjct: 146 LTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIVMM 205
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N ++V A I GL S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 206 GMGEPLYNFDSVKTALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 265
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
D++R+ ++PIN+KY L L++ R N ++ FEYVML GVNDS +DAK LI L
Sbjct: 266 VRDDLRDMLVPINKKYPLKELMDACRAYPGLSNARRITFEYVMLKGVNDSLEDAKGLIQL 325
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++GIP KINLI FNP G+ + + E++ +F + + AG +R RG D +AACGQL
Sbjct: 326 LKGIPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACGQL 385
>gi|378580972|ref|ZP_09829624.1| ribosomal RNA large subunit methyltransferase N [Pantoea stewartii
subsp. stewartii DC283]
gi|377816451|gb|EHT99554.1| ribosomal RNA large subunit methyltransferase N [Pantoea stewartii
subsp. stewartii DC283]
Length = 389
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 208/355 (58%), Gaps = 20/355 (5%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNKD 164
K ++ L ++ +++++ S +P +A +M W I+ +C D+ E +NK
Sbjct: 19 KSQKINLLDLNRQQMREFFVSLGEKPFRADQVMKW-------IYHYCCDDFEQMTDINKK 71
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L E E RA + + + S+DGT K + D LV ETV IP R T+CVSSQVG
Sbjct: 72 LRNRLMELTEIRAPEVAEEMRSTDGTIKWAIRVGDQLV-ETVYIP-EGDRATLCVSSQVG 129
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHN 280
CA+ C+FC T + G R+L +EI+ Q A +++ + + ITN+V MGMGEPL N
Sbjct: 130 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKLTGQRPITNIVMMGMGEPLLN 189
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D++R+
Sbjct: 190 LNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKLRDD 249
Query: 341 IMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
I+PIN+KY + + ++ + N +V EYV+L VNDS DDA L L++ PC
Sbjct: 250 IVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLKETPC 309
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 310 KINLIPWNPFPGAPYGRSSNSRIDRFAKVLMDYGFTTIVRKTRGDDIDAACGQLA 364
>gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-4]
gi|122943998|sp|Q0HKW2.1|RLMN_SHESM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4]
Length = 373
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 200/342 (58%), Gaps = 14/342 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 28 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISSYQKSADGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP + R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 83 FAIHVGEGQEVETVYIPED-DRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 141
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + + G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 142 WRVSHFLGFAKDTGERPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 201
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N
Sbjct: 202 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 261
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 262 GRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 321
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 322 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 361
>gi|340782108|ref|YP_004748715.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
gi|340556261|gb|AEK58015.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
Length = 370
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 189/331 (57%), Gaps = 10/331 (3%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
LQ+W FR Q L + DD A + + K + L + +
Sbjct: 29 LQEWGEP-PFRASQILQWLHQRQVDDFAA-----MSNIGKALRARLMAETRWDEPEVIAD 82
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
+ DGTRK L L DG IETV IP R T+C+SSQVGC++ C FC TG GL R+L
Sbjct: 83 QLACDGTRKWLLRLPDGNAIETVFIP-EEDRGTLCISSQVGCSLACSFCATGAQGLNRNL 141
Query: 244 TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
++ EIV Q ARR L + +ITNVVFMGMGEPL N++ VI +++ + S R+
Sbjct: 142 SSHEIVAQVRVARRHLG--LDAITNVVFMGMGEPLLNLKQVIPVIRLLLDDFAYGLSSRR 199
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VTVST+G++P L+Q E+ LA+SL+A+ +++R+ ++PINR Y L L+ R
Sbjct: 200 VTVSTAGVLPGLEQLGRETPVNLAISLHASRNDLRDELVPINRHYPLAQLMAACR-SYPL 258
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
++ FEYVML GVNDS DA+ L+ L++G+P +NLI FNP GS + ++ ++
Sbjct: 259 PPRRRITFEYVMLDGVNDSDADARALVRLLRGLPALVNLIPFNPFPGSPYRRSSLARIDA 318
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
FR I+ AG R RGDD AACGQL
Sbjct: 319 FREIVLSAGIMTVTRRPRGDDIAAACGQLAG 349
>gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
Length = 378
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/330 (42%), Positives = 193/330 (58%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ E +NK + L + AE RA + S+DG
Sbjct: 33 FRADQ-VMKW-------IYHYCYDDFEQMSDINKVLRTKLQQIAEIRAPEVAQEQRSADG 84
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K + D V ETV IP R T+CVSSQVGCA+ C FC T + G R+L AEI+
Sbjct: 85 TIKWAIKVGDQQV-ETVYIP-EADRATLCVSSQVGCALECTFCSTAQQGFSRNLRVAEII 142
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ S S ITNVV MGMGEPL N+ NV+ A +IM+ + G S R+VT
Sbjct: 143 GQVWRAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVT 202
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HF 363
+STSG+VP L + + + ALA+SL+A TDE+R+ I+PINRKY + + +R L
Sbjct: 203 LSTSGVVPALDKLGDMIDVALAISLHAPTDEIRDEIVPINRKYNIDTFLAAVRRYLAKSN 262
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +NDS + A +L ++ PCKINLI +NP G+ + +++ ++
Sbjct: 263 ANQGRVTVEYVMLDHINDSPEQAHQLAECLKNTPCKINLIPWNPFPGAPYGRSSNSRVDR 322
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 323 FSKVLIQYGFTTIVRKTRGDDIDAACGQLA 352
>gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|418241088|ref|ZP_12867621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|433548003|ref|ZP_20504053.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica IP 10393]
gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica W22703]
gi|351779572|gb|EHB21678.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|431790563|emb|CCO67093.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica IP 10393]
Length = 397
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 209/361 (57%), Gaps = 16/361 (4%)
Query: 102 DNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE-- 159
DN V S++ L ++ +++++ +P +A + K +Y +C D+ E
Sbjct: 19 DNAVVTASATSKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCFDDFEQM 73
Query: 160 -GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVC 218
+NK + L AE RA + + S+DGT K + D V ETV IP R T+C
Sbjct: 74 TDINKVLRAKLQRVAEIRAPEVAEEQRSTDGTIKWAIKVGDQQV-ETVYIP-EGDRATLC 131
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGM 274
VSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S G+ ITNVV MGM
Sbjct: 132 VSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMGM 191
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATT 334
GEPL N+ NV+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A T
Sbjct: 192 GEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPT 251
Query: 335 DEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
D++R+ I+PINRKY + + +R L N +V EYVML +NDS + A +L
Sbjct: 252 DDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAEC 311
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 312 LKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQL 371
Query: 453 G 453
Sbjct: 372 A 372
>gi|383934221|ref|ZP_09987663.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
gi|383704677|dbj|GAB57754.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
Length = 375
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 196/329 (59%), Gaps = 19/329 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILT----SSD 188
FR Q +M W I+ C D+ + ++ + K+L E + R + ++ SSD
Sbjct: 30 FRADQ-VMKW-------IYHFCIDDFDKMS-NINKVLREKLKARCVIEAPVVVTRQDSSD 80
Query: 189 GTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI 248
GT K + L G +ETV IP + R T+CVSSQVGCA++C FC T + G R+LT AEI
Sbjct: 81 GTIKFVMGLSGGQEVETVWIP-EKDRRTLCVSSQVGCALDCSFCSTAQQGFNRNLTVAEI 139
Query: 249 VEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
+ Q +L+ S + G +TNVV MGMGEPL N+ NV+ A +M+ + G S R+V
Sbjct: 140 IGQVWRVAQLIGSYGDTGDKPVTNVVMMGMGEPLLNLNNVVPAMELMLEDFGFGLSKRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL-GLLIETLREELHF 363
T+STSG+VP L + + ALA+SL+A +E+RN ++P+NRKY + L + R +
Sbjct: 200 TLSTSGVVPALDLLREKIDVALAISLHAPNNELRNELVPVNRKYPMEEFLAASRRYVANS 259
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
K N KV EYVML GVNDS + A L ++ P KINLI FNP+ GS + +++ ++
Sbjct: 260 KANDKVTVEYVMLEGVNDSMEQAHELAQALKDTPSKINLIPFNPYPGSPYKRSSNSRIDR 319
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F +L G TV +R +RGDD AACGQL
Sbjct: 320 FNKVLQEYGFTVIVRKTRGDDIDAACGQL 348
>gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 396
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 194/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + S+DGT
Sbjct: 51 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTI 105
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 106 KWAMRVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 163
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 164 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 223
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A DE+R+ IMPIN ++ + + T+R + N
Sbjct: 224 TSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNAN 283
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 284 RGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 343
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 344 KTLMQYEHTVTIRKTRGDDIDAACGQL 370
>gi|217979092|ref|YP_002363239.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2]
gi|254807188|sp|B8EIR0.1|RLMN_METSB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|217504468|gb|ACK51877.1| radical SAM enzyme, Cfr family [Methylocella silvestris BL2]
Length = 399
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 193/332 (58%), Gaps = 23/332 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW +Y A D++ ++K + L+E + S+DGTRK L
Sbjct: 54 LWHWIYHRG--AGSFDDMLNVSKVLRTQLAEKFTLARPQIVTEQVSTDGTRKWLIRFAPS 111
Query: 198 ---DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
D +E V IP + R T+CVSSQVGC + C FC+TG R+LTA EI+ Q +
Sbjct: 112 AESDRLAEVECVYIP-DVDRGTLCVSSQVGCTLTCSFCHTGTQKFVRNLTAQEIIAQLII 170
Query: 255 ARRLLS------------SEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS 300
AR + S GS +TN+VFMGMGEPL+N++NV+ A +++ GL S
Sbjct: 171 ARDRIGDFPGLAPRDGKGSNSGSRLVTNIVFMGMGEPLYNLDNVVDAVSVLSDGDGLSLS 230
Query: 301 PRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
R++TVST+G+VP+L + ++ LA+SL+A DE+RN ++P+N+KY + L++ R+
Sbjct: 231 RRRITVSTAGVVPKLPELGEKTGAMLAISLHAVRDELRNTLVPLNKKYPIAALLQACRDY 290
Query: 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 420
N ++ FEYVML G+NDS DA+ L+ L++GIP KINLI FNP G+ + + D
Sbjct: 291 PGASNARRITFEYVMLKGINDSPSDARELVRLLKGIPAKINLIPFNPWPGTAYECSDDAV 350
Query: 421 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ +F +I+ AG +R RG D +AACGQL
Sbjct: 351 IEKFSDIVFNAGYASPVRTPRGRDILAACGQL 382
>gi|300704417|ref|YP_003746020.1| hypothetical protein RCFBP_20221 [Ralstonia solanacearum CFBP2957]
gi|421888535|ref|ZP_16319625.1| conserved hypothetical protein, predicted radical SAM enzyme
[Ralstonia solanacearum K60-1]
gi|299072081|emb|CBJ43413.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum CFBP2957]
gi|378966093|emb|CCF96373.1| conserved hypothetical protein, predicted radical SAM enzyme
[Ralstonia solanacearum K60-1]
Length = 383
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 188/329 (57%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGAADFGEMTD----LAKSLREKLATRATIQAPAVISDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EIV Q
Sbjct: 81 KWLVDVGAGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+STSG+VP + + ++ ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TLSTSGVVPMMDRLSHDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVNDS + A+ L+ +V +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|418939534|ref|ZP_13492929.1| Ribosomal RNA large subunit methyltransferase N [Rhizobium sp.
PDO1-076]
gi|375053767|gb|EHS50167.1| Ribosomal RNA large subunit methyltransferase N [Rhizobium sp.
PDO1-076]
Length = 414
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 184/316 (58%), Gaps = 20/316 (6%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPC 210
D + ++KD ++ML H + + S+DGTRK L + IE V IP
Sbjct: 71 DAMVNVSKDMREMLKTHFTIARPEIVEEQISNDGTRKWLLRFPPRGAGRPVEIEAVYIP- 129
Query: 211 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR------------- 257
GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR
Sbjct: 130 EEGRGTLCISSQVGCTLTCTFCHTGTQKLVRNLTAEEILSQLLLARDRLGDFPDRDVPQG 189
Query: 258 -LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316
++ S +TN+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++
Sbjct: 190 GMVPSSDRKVTNIVMMGMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIY 249
Query: 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ +E LA+SL+A D++R+ ++PIN+KY L LIE R N ++ FEYVML
Sbjct: 250 RTGDEIGVMLAISLHAVRDDLRDLLVPINKKYPLKDLIEACRNYPGLSNARRITFEYVML 309
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
VNDS +DAK LI L++G+P KINLI FNP G+ + + E++ +F + + AG
Sbjct: 310 KDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINAAGYASP 369
Query: 437 LRLSRGDDQMAACGQL 452
+R RG D +AACGQL
Sbjct: 370 IRTPRGRDILAACGQL 385
>gi|398845270|ref|ZP_10602311.1| 23S rRNA methyltransferase [Pseudomonas sp. GM84]
gi|398253722|gb|EJN38838.1| 23S rRNA methyltransferase [Pseudomonas sp. GM84]
Length = 381
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 205/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++++ S FR GQ +M W +G D +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDFAAMTN----VGKALREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRPPEVVSEDISADGTRKWVIRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNQLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKVLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RG+D AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGEDIDAACGQL 348
>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|440765905|ref|ZP_20944916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|440766943|ref|ZP_20945929.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
gi|440773642|ref|ZP_20952535.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|254807201|sp|B5F1A0.1|RLMN_SALA4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|436411112|gb|ELP09066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|436415369|gb|ELP13289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|436421442|gb|ELP19287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
Length = 388
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 210/357 (58%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLN 162
V+P K +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +N
Sbjct: 14 VVPNKEAKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMY-----HYCCDNFDEMTDIN 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQ
Sbjct: 69 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQ 126
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 187 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 247 DEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKET 306
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|395649896|ref|ZP_10437746.1| hypothetical protein Pext1s1_15012 [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 382
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKHIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQL 348
>gi|17545931|ref|NP_519333.1| hypothetical protein RSc1212 [Ralstonia solanacearum GMI1000]
gi|81505540|sp|Q8Y032.1|RLMN_RALSO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|17428226|emb|CAD14914.1| conserved hypothetical protein 48 [Ralstonia solanacearum GMI1000]
Length = 383
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 187/329 (56%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGAADFGEMTD----LAKSLREKLATRATIQAPAVISDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EIV Q
Sbjct: 81 KWLVDVGAGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TLSTSGVVPMMDRLSQDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVNDS + A+ L+ +V +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDSVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|374981957|ref|ZP_09723279.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378445942|ref|YP_005233574.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378451265|ref|YP_005238624.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700426|ref|YP_005182383.1| hypothetical protein SL1344_2487 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378985084|ref|YP_005248239.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378989905|ref|YP_005253069.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|379701754|ref|YP_005243482.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497213|ref|YP_005397902.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|417540943|ref|ZP_12192814.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|81594911|sp|Q8ZN52.1|RLMN_SALTY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|353661724|gb|EHD00962.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|380464034|gb|AFD59437.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
Length = 388
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 210/357 (58%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLN 162
V+P K +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +N
Sbjct: 14 VVPNKETKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMY-----HYCCDNFDEMTDIN 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQ
Sbjct: 69 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQ 126
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 187 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 247 DEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKET 306
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|398915995|ref|ZP_10657563.1| 23S rRNA methyltransferase [Pseudomonas sp. GM49]
gi|398924360|ref|ZP_10661149.1| 23S rRNA methyltransferase [Pseudomonas sp. GM48]
gi|398173485|gb|EJM61319.1| 23S rRNA methyltransferase [Pseudomonas sp. GM48]
gi|398175524|gb|EJM63273.1| 23S rRNA methyltransferase [Pseudomonas sp. GM49]
Length = 380
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQLEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKAV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSNLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|385792913|ref|YP_005825889.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678238|gb|AEE87367.1| radical SAM superfamily protein [Francisella cf. novicida Fx1]
Length = 370
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 185/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E A+ + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ +ND
Sbjct: 214 SGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEIND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA++L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEQLVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
W3-18-1]
gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1]
Length = 399
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 199/342 (58%), Gaps = 14/342 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q LM W +G + +E+ +NK ++ L+ E A + S+DGT K
Sbjct: 54 FRADQ-LMKWIYHFGVSDF----EEMTNINKVLRQKLAARCEIVAPEISSFQKSTDGTIK 108
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +G +ETV IP R T+CVSSQVGCA+ C FC T + G R+LT +EIV Q
Sbjct: 109 FAIHVGEGQEVETVYIP-EDDRATLCVSSQVGCALECTFCSTAQQGFNRNLTVSEIVGQI 167
Query: 253 VFARRLL--SSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
L + + G ITNVV MGMGEPL N+ NVI A +IM+ + G S R+VT+ST
Sbjct: 168 WRVSHFLGFAKDTGDRPITNVVMMGMGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLST 227
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALAVS++A DE+R+ ++P+N+KY L + +R + N
Sbjct: 228 SGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANR 287
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A L L++ PCK+NLI FNP+ GS + +++ ++ F
Sbjct: 288 GRVTVEYVMLDHINDSTEQAHELAKLMKDTPCKVNLIPFNPYPGSPYGRSSNSRIDRFSK 347
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEK 468
+L G TV +R +RGDD AACGQL G I+ R+ +K
Sbjct: 348 VLMEYGLTVIVRKTRGDDIDAACGQLA--GDIRDRTKRLAKK 387
>gi|118592064|ref|ZP_01549458.1| hypothetical protein SIAM614_25347 [Stappia aggregata IAM 12614]
gi|118435360|gb|EAV42007.1| hypothetical protein SIAM614_25347 [Labrenzia aggregata IAM 12614]
Length = 407
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 206/372 (55%), Gaps = 31/372 (8%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELE 159
VLP + L+ G+S EL + + + Q M LW LY G +A T+
Sbjct: 24 VLPGEDKPTLI-GLSREELGEALGTIGVPQKQWRMRASQLWHWLYVRGVSDFAQMTN--- 79
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGR 214
+ KD ++ L E + S DGTRK LF + +ETV IP GR
Sbjct: 80 -IAKDLRQKLDEAFTIARPEIVSEQISVDGTRKWLFRFPARGAGRPVEVETVYIP-EEGR 137
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS-------------- 260
T+CVSSQVGC + C FC+TG + R+LTA EI+ Q + AR L
Sbjct: 138 GTLCVSSQVGCTLTCTFCHTGTQKMVRNLTAEEILSQILIARDRLGDFPHADTPQGAIVP 197
Query: 261 SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 320
SE +TN+V MGMGEPL+N +NV KA I GL S R++T+STSG+VP++ +
Sbjct: 198 SEGRLVTNIVMMGMGEPLYNFDNVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGE 257
Query: 321 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 380
E C LA+SL+A DE+R+ ++PIN+K+ + L++ R+ N ++ FEYVML GVN
Sbjct: 258 EIGCMLAISLHAVRDELRDVLVPINKKWNIKELLDACRQYPGLSNAKRITFEYVMLKGVN 317
Query: 381 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 440
DS DA L+ L++GIP KINLI FNP G+ + + E++ EF +I+ AG +R
Sbjct: 318 DSNKDALELVRLLKGIPAKINLIPFNPWPGTDYECSDWERIEEFADIVNRAGYASPIRTP 377
Query: 441 RGDDQMAACGQL 452
RG D AACGQL
Sbjct: 378 RGRDIFAACGQL 389
>gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
Length = 372
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 196/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W YG+D + D + +NK ++ L + AE +A + S DGT K
Sbjct: 28 FRADQ-IMKWIYHYGEDNF----DNMTNINKVLREKLKQVAEIKAPEIAVEQRSFDGTIK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D IE+V IP R T+CVSSQVGCA+ C FC T + G R+LT +EI+ Q
Sbjct: 83 WAMQVGDQQ-IESVYIP-EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQV 140
Query: 253 VFARRLL----SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ ++V ITNVV MGMGEPL NV NV+ A IM+ + G S R+VT+ST
Sbjct: 141 WRASKVIGAFGETKVRPITNVVMMGMGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLST 200
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + ALA+SL+A DE+RN I+P+N+KY + +L++++ L N+
Sbjct: 201 SGVVPALDKLGEMIDVALAISLHAPNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANH 260
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML VND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 261 GKVTIEYVMLDHVNDEVEHAHQLAKVLKNTPCKINLIPWNPFPEAPYNKSSNTRIDRFQK 320
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 321 TLMEYGFTVIVRKTRGDDIDAACGQLA 347
>gi|187931627|ref|YP_001891611.1| radical SAM protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|205829765|sp|B2SGH6.1|RLMN_FRATM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|187712536|gb|ACD30833.1| radical SAM enzyme domain, Cfr family [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 370
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 184/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E A+ + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQNGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|118497539|ref|YP_898589.1| radical SAM superfamily protein [Francisella novicida U112]
gi|195536235|ref|ZP_03079242.1| radical SAM enzyme, Cfr family [Francisella novicida FTE]
gi|208779338|ref|ZP_03246684.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
gi|254372900|ref|ZP_04988389.1| hypothetical protein FTCG_00471 [Francisella tularensis subsp.
novicida GA99-3549]
gi|205829766|sp|A0Q6H0.1|RLMN_FRATN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118423445|gb|ABK89835.1| radical SAM superfamily protein [Francisella novicida U112]
gi|151570627|gb|EDN36281.1| hypothetical protein FTCG_00471 [Francisella novicida GA99-3549]
gi|194372712|gb|EDX27423.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
novicida FTE]
gi|208745138|gb|EDZ91436.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
Length = 370
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 184/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E A+ + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|448243474|ref|YP_007407527.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445213838|gb|AGE19508.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|453061734|gb|EMF02731.1| ribosomal RNA large subunit methyltransferase N [Serratia
marcescens VGH107]
Length = 398
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 209/362 (57%), Gaps = 20/362 (5%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE- 159
++NV +++ L ++ +++++ +P +A +M W I+ +C D+ E
Sbjct: 21 SVNVEQPAAAKINLLDLNRQQMREFFAEMGEKPFRADQVMKW-------IYHYCCDDFEQ 73
Query: 160 --GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
+NK + L AE RA + + S+DGT K + D V ETV IP R T+
Sbjct: 74 MTDINKVLRGKLQRVAEIRAPEVAEEQRSADGTIKWAIKVGDQQV-ETVYIP-EADRATL 131
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMG 273
CVSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MG
Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGQRPITNVVMMG 191
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAP 251
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIG 391
D +R+ I+PINRKY + + +R L N +V EYVML +NDS DDA +L
Sbjct: 252 NDTIRDEIVPINRKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLAE 311
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
+++ PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQ
Sbjct: 312 VLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQ 371
Query: 452 LG 453
L
Sbjct: 372 LA 373
>gi|419644180|ref|ZP_14175767.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9081]
gi|380622514|gb|EIB41263.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni LMG 9081]
Length = 356
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/316 (40%), Positives = 189/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L ++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSNLPKDLRLELVQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNISAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH G + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|167031908|ref|YP_001667139.1| radical SAM protein [Pseudomonas putida GB-1]
gi|205829825|sp|B0KPI4.1|RLMN_PSEPG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|166858396|gb|ABY96803.1| radical SAM enzyme, Cfr family [Pseudomonas putida GB-1]
Length = 381
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 204/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L G++ E++Q+ S FR GQ +M W +G +A T+ + K ++ L
Sbjct: 7 KINLLGLTQPEMEQFFDSIGEKRFRAGQ-VMKWIHHFGVSDFAAMTN----VGKVLREKL 61
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C
Sbjct: 62 EAVAEIRPPEVVSEDISADGTRKWVIRVASGSCVETVYIPTD-DRGTLCVSSQAGCALDC 120
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFMGMGEPLHNVENVI 285
FC TG+ G +LTAAE++ Q A + + +ITNVV MGMGEPL N +NVI
Sbjct: 121 SFCSTGKQGFNSNLTAAEVIGQVWLANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVI 180
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + G S R+VT+STSG+VP + + + +LA+SL+A DE+RN ++PIN
Sbjct: 181 AAMKIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
+KY L +L+E+ + +VL EY +L VND + A ++I L++ +PCKINLI
Sbjct: 241 KKYPLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRDVPCKINLIP 300
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP S + ++ + F+++L G V R +RGDD AACGQL
Sbjct: 301 FNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQL 348
>gi|429081719|ref|ZP_19144819.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
gi|426549611|emb|CCJ70860.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
Length = 388
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 207/353 (58%), Gaps = 16/353 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFK 166
K ++ L ++ E++++ ++ +P +A + K +Y DD DE+ +NK +
Sbjct: 18 KSEKINLLDLNRHEMREFFKTMGEKPFRADQVMKWMYHYCCDDF-----DEMTDINKVLR 72
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA
Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCA 130
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLT 190
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ I+
Sbjct: 191 NVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIV 250
Query: 343 PINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY + + +R + N +V EYVML VND + A +L L++ PCKI
Sbjct: 251 PINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKI 310
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 311 NLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|398874325|ref|ZP_10629536.1| 23S rRNA methyltransferase [Pseudomonas sp. GM74]
gi|398195394|gb|EJM82441.1| 23S rRNA methyltransferase [Pseudomonas sp. GM74]
Length = 381
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K ++ L
Sbjct: 10 LLGLTQLEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALREKLKSV 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSNLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
Length = 393
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 212/362 (58%), Gaps = 21/362 (5%)
Query: 104 INVLPKKGS-RVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE- 159
+++ P+K + ++ L ++ +++++ +P +A +M W I+ +C D+ +
Sbjct: 16 VSITPEKNTQKINLLDLNRKQMREFFAELGEKPFRADQVMKW-------IYHYCYDDFDQ 68
Query: 160 --GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
+NK + L E AE RA + D SSDGT K + D LV ETV IP R T+
Sbjct: 69 MTDINKVLRTKLKEVAEIRAPEVADEQRSSDGTIKWAIKVGDQLV-ETVYIP-EADRATL 126
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMG 273
CVSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S + ITNVV MG
Sbjct: 127 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGRRPITNVVMMG 186
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A
Sbjct: 187 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAP 246
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNY--KVLFEYVMLAGVNDSFDDAKRLIG 391
TD+VR+ I+PIN+KY + + ++ L N +V EYVML +NDS + A +L
Sbjct: 247 TDDVRDEIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQLAE 306
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
++ P KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQ
Sbjct: 307 CLKNTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQ 366
Query: 452 LG 453
L
Sbjct: 367 LA 368
>gi|422321702|ref|ZP_16402747.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans C54]
gi|317403336|gb|EFV83849.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans C54]
Length = 384
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 197/358 (55%), Gaps = 21/358 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKML 169
R+ L G+ + L + V +P +A L W G D + TD L +DF+ L
Sbjct: 5 ERINLLGLDGSALSELVGQWGGKPFRARQLQRWMHQRGADSFDAMTD----LARDFRGQL 60
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ AL++ SSDGTRK LF + G IETV IP + R T+C+SSQ GC +NC
Sbjct: 61 ASRCVIEALAVNTEQRSSDGTRKWLFDVGQGNAIETVFIPED-DRGTLCISSQAGCVVNC 119
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------------ITNVVFMGMG 275
+FC TG G R+L +EI+ Q +A+R+L +++G+ I+NVV MGMG
Sbjct: 120 RFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATDDTRVISNVVMMGMG 179
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + V+ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A D
Sbjct: 180 EPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPND 239
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++P+N+KY L L+ L F + FEY ML G+ND+ A+ LI + +
Sbjct: 240 ALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHARELIHIARQ 299
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I CK+NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 300 IRCKLNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLA 357
>gi|413962504|ref|ZP_11401731.1| radical SAM enzyme, Cfr family protein [Burkholderia sp. SJ98]
gi|413928336|gb|EKS67624.1| radical SAM enzyme, Cfr family protein [Burkholderia sp. SJ98]
Length = 380
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/342 (41%), Positives = 199/342 (58%), Gaps = 27/342 (7%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA-LSLKDILT---SSD 188
FR Q L W YG ++ +G+ D K L E + RA +++ DI++ S+D
Sbjct: 29 FRAKQ-LQRWIHQYG-------AEDFDGMT-DLAKSLREKLKGRANMAMPDIISDHVSAD 79
Query: 189 GTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI 248
GTRK L + +G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+LT EI
Sbjct: 80 GTRKWLVDVGNGNAVETVFIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLTTGEI 138
Query: 249 VEQ---AVFA-RRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
+ Q A FA R+ L EVG +TNVV MGMGEP+ N + V+ A +M+ +
Sbjct: 139 IGQLRMAEFALRKSLGREVGGPGKGERVVTNVVMMGMGEPMLNYDAVVPAMRLMLDDNAY 198
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R+VT+STSG+VP + + + ALAVSL+A D +R+ ++P+N+KY L L+
Sbjct: 199 GLSRRRVTLSTSGVVPMMDRLAADLPVALAVSLHAPNDPLRDMLVPLNKKYPLRELMAAC 258
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
+ L + FEY ML GVND+ A+ L+ + + +PCK NLI FNP S T +
Sbjct: 259 QRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRDVPCKFNLIPFNPFPESGLTRSK 318
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
+E++ F +L AG +R +RGDD AACGQL GA+Q
Sbjct: 319 NEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLA--GAVQ 358
>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
Length = 384
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEMAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFLGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis PB1/+]
gi|205829930|sp|B2K9Q3.1|RLMN_YERPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+]
Length = 398
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 206/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
S++ L ++ +++++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 SKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCYDDFEQMTDINKGLRAK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 85 LQRVAEIRAPEVAEEQRSVDGTIKWAIKVGDQQV-ETVYIP-EADRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ S G+ ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+PI
Sbjct: 203 VPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPI 262
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + + +R L N +V EYVML +NDS + A +L ++ PCKINL
Sbjct: 263 NRKYNIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|336323368|ref|YP_004603335.1| ribosomal RNA large subunit methyltransferase N [Flexistipes
sinusarabici DSM 4947]
gi|336106949|gb|AEI14767.1| Ribosomal RNA large subunit methyltransferase N [Flexistipes
sinusarabici DSM 4947]
Length = 346
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 200/341 (58%), Gaps = 8/341 (2%)
Query: 115 LLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAE 174
L +S L+ + +P + L+K +Y I+ E+ L+K ++ L +
Sbjct: 3 FLDDLSRQNLEYEMTELGEKPFRGRQLYKWMYSKGIFD--LQEMTDLSKQLRQKLEQKYG 60
Query: 175 FRALS-LKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
FR + ++ I + DG+ K+L L D IETV++ + R T CVS+QVGC M C FC
Sbjct: 61 FRKIEVIEKIQSKKDGSTKVLLELGDKNRIETVILR-DGERLTGCVSTQVGCRMGCSFCS 119
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293
T ++GL R+L EIV Q + RLLS + ++N+VFMGMGEPL N++N+ +A I++
Sbjct: 120 TAKIGLIRNLKIGEIVRQIIIMNRLLSEKNEKLSNIVFMGMGEPLDNLDNLNEAIKIILD 179
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNE--SNCALAVSLNATTDEVRNWIMPINRKYKLG 351
E GL+FS RKVTVST G+V +LK+ E S LAVSLN T +++R MP+++KY +
Sbjct: 180 ENGLNFSHRKVTVSTCGMVNELKKMYEELDSPVNLAVSLNFTDNKIRQRYMPVSKKYPVE 239
Query: 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS 411
LI TLR L + ++ EYV+L +NDS DAK L +++G+P KINLI +N
Sbjct: 240 ALISTLR-NLPLQKRKRITIEYVLLKNINDSQMDAKYLAEVLRGLPVKINLIVYN-DSDI 297
Query: 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F DE ++ F+ +L G + F+R S G D ACGQL
Sbjct: 298 GFNSAADENVLAFQKVLLDKGLSAFIRKSLGSDIEGACGQL 338
>gi|222150075|ref|YP_002551032.1| Fe-S-cluster redox protein [Agrobacterium vitis S4]
gi|254807147|sp|B9JU97.1|RLMN_AGRVS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|221737057|gb|ACM38020.1| Fe-S-cluster redox protein [Agrobacterium vitis S4]
Length = 410
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 200/360 (55%), Gaps = 26/360 (7%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G + E+ + +R Q M LW +Y + D++ + KD ++ L
Sbjct: 27 LIGQTREEMGEMLREIGVADKQVRMRVAQLWNWIYVRGVSDF--DQMTNVAKDMREKLKA 84
Query: 172 HAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
H + + S+DGTRK L + +E V IP GR T+CVSSQVGC
Sbjct: 85 HFTIARPEIVEEQVSNDGTRKWLLRYPPRGAGRPVEVECVYIP-EEGRGTLCVSSQVGCT 143
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVVFM 272
+ C FC+TG L R+LTA E++ Q + AR ++ +E ITN+V M
Sbjct: 144 LTCTFCHTGTQKLVRNLTAEEVLSQLLLARDRLGDFPDRDAPVGAMVPNEGRKITNMVMM 203
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL+N E V KA I GL S R++T+STSG+VP++ + +E LA+SL+A
Sbjct: 204 GMGEPLYNFEEVKKALLIASDGDGLSLSKRRITLSTSGVVPEIYRTGDEIGVMLAISLHA 263
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
DE+R+ ++PIN+KY L LIE R N ++ FEYVML VNDS +DAK LI L
Sbjct: 264 VRDELRDLLVPINKKYPLKDLIEACRNYPGLSNARRITFEYVMLKDVNDSLEDAKGLIQL 323
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++GIP KINLI FNP G+ + + +++++F + + AG +R RG D +AACGQL
Sbjct: 324 LKGIPSKINLIPFNPWPGTNYQCSDWDQIMKFADFINSAGYASPIRTPRGRDILAACGQL 383
>gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
Length = 373
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + T+ +NK+ ++ L H E RA + D SSDGT
Sbjct: 28 AFRADQ-IMKWIYHFGCDDFEKMTN----INKNLREKLQTHCEIRAPYVSDAQYSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMRVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A +M+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDGTEHAHELAQLMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|419653985|ref|ZP_14184940.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|419664985|ref|ZP_14195063.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|419680917|ref|ZP_14209768.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 140-16]
gi|419687117|ref|ZP_14215527.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1798]
gi|419689824|ref|ZP_14218045.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1893]
gi|419691778|ref|ZP_14219889.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1928]
gi|380631853|gb|EIB49995.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-872]
gi|380644368|gb|EIB61557.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1997-7]
gi|380659349|gb|EIB75328.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 140-16]
gi|380662927|gb|EIB78604.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1798]
gi|380670225|gb|EIB85485.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1893]
gi|380671657|gb|EIB86859.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 1928]
Length = 356
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 189/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DSINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|300724166|ref|YP_003713483.1| pyruvate formate lyase activating enzyme 2 [Xenorhabdus nematophila
ATCC 19061]
gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
nematophila ATCC 19061]
Length = 392
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 210/360 (58%), Gaps = 17/360 (4%)
Query: 104 INVLP-KKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE--- 159
I+V P KK ++ L ++ +++Q+ +P +A + K +Y +C D+ E
Sbjct: 15 ISVTPEKKNGKINLLDLNRKQMRQFFIDMGEKPFRADQVMKWMY-----HYCYDDFEQMT 69
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
+NK + L + AE +A + + SSDGT K + D V ETV IP + R T+CV
Sbjct: 70 DINKVLRAKLQQVAEIKAPEVAEEQRSSDGTIKWAITVGDQQV-ETVYIPED-DRATLCV 127
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMG 275
SSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MGMG
Sbjct: 128 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMGMG 187
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD
Sbjct: 188 EPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTD 247
Query: 336 EVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
++R+ I+PINRKY + + +R L N +V EYVML VNDS + A +L +
Sbjct: 248 DIRDEIVPINRKYNIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDSVEQAHQLAECL 307
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ P KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 KDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 367
>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
gi|254040797|gb|ACT57593.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 384
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/331 (40%), Positives = 190/331 (57%), Gaps = 22/331 (6%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG 200
+WK +Y I + ++++ + +L++H + D S DGTRK L
Sbjct: 38 IWKWIYVRGIRDF--QGMSDISQEVRHLLNQHFSIIYPEIVDEKISCDGTRKWLLRFPAR 95
Query: 201 LV-----IETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFA 255
+ IETV IP + R T+CVSSQVGC++ C FCYTG L R+LTA EI+ Q + A
Sbjct: 96 CIGGPVEIETVYIP-EKSRGTLCVSSQVGCSLTCSFCYTGTQKLVRNLTAEEILLQVLLA 154
Query: 256 RRLLSSEVG--------------SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301
R LL G I+N+V MGMGEPL N +NV K+ +I GL FS
Sbjct: 155 RSLLGDFPGCEDIEGMVIPSVGRKISNIVMMGMGEPLCNFDNVKKSLSIASDSMGLSFSK 214
Query: 302 RKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361
R++T+STSG VP + + E LA+SL+A ++++RN ++PINRKY L +LI+ R
Sbjct: 215 RRITLSTSGFVPNIARVGEEIGVMLAISLHAVSNDLRNILVPINRKYPLEMLIDACRHYP 274
Query: 362 HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421
N ++ FEYVML G+NDS DA LI +++GIP KINLI FNP G ++ + + +
Sbjct: 275 GLSNARRITFEYVMLKGINDSPRDALNLIKILKGIPAKINLIPFNPWPGCEYLCSDQKDI 334
Query: 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F + +G + +R RG D +AACGQL
Sbjct: 335 VTFSECIKRSGYSSPIRTPRGLDILAACGQL 365
>gi|333908814|ref|YP_004482400.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
posidonica IVIA-Po-181]
gi|333478820|gb|AEF55481.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
posidonica IVIA-Po-181]
Length = 371
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 207/350 (59%), Gaps = 16/350 (4%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L G+S T+L ++ S FR Q +M W G A DE+ ++K + L
Sbjct: 6 KVNLLGLSPTKLIEFFESIGEKKFRATQ-VMKWIHQKG----AESFDEMTDVSKALRAKL 60
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRGRTTVCVSSQVGCAM 227
E RA + S DGTRK + + G +ETV+IP + R T+CVSSQVGC++
Sbjct: 61 ETICEIRAPEVVSQNISKDGTRKWIIRTEGGKNDCVETVLIP-DGDRATLCVSSQVGCSL 119
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARR----LLSSEVGSITNVVFMGMGEPLHNVEN 283
+C FC TG+ G R+LT AEI+ Q A + + + +TNVV MGMGEPL N E
Sbjct: 120 DCSFCSTGKQGFNRNLTPAEIIGQVWIAIKSFGPMDPNGPRRVTNVVMMGMGEPLMNFEP 179
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ A +M+H+ S R+VT+STSG+VP++ + + ++ +LA+SL+A + +R+ ++P
Sbjct: 180 VVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYELIKRTDVSLAISLHAPNNPLRDELVP 239
Query: 344 INRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
INRKY + LIE + L + + + EY +++GVND+ + A L+ L++ + CK+NL
Sbjct: 240 INRKYPIAELIEACQHYLANLPDKRHITIEYTLMSGVNDNEEQAHELVELLKDLECKVNL 299
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP S + ++ + F+ ILA AG TV +R +RGDD AACGQL
Sbjct: 300 IPFNPFPHSGYEKPSNNRTRRFQKILADAGYTVTVRTTRGDDIDAACGQL 349
>gi|365157095|ref|ZP_09353376.1| ribosomal RNA large subunit methyltransferase N [Bacillus smithii
7_3_47FAA]
gi|363625829|gb|EHL76840.1| ribosomal RNA large subunit methyltransferase N [Bacillus smithii
7_3_47FAA]
Length = 365
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 196/337 (58%), Gaps = 9/337 (2%)
Query: 119 MSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRAL 178
M EL++W+R H +P +A ++ LY + + +E+ L K + L+EH F
Sbjct: 25 MELPELKEWIRHHGEKPFRAEQIYDWLYKKRVTSF--EEMTNLPKSLRDKLAEH--FTIT 80
Query: 179 SLKDIL--TSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGR 236
+LK I+ TS DGT K LF L DG IETV++ G +VCV++QVGC + C FC +
Sbjct: 81 TLKTIVQQTSQDGTIKFLFELHDGFSIETVLMRHRYG-NSVCVTTQVGCRIGCTFCASTL 139
Query: 237 MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQG 296
GLKR+L A EIV QAV ++ L +++VV MG+GEP N + ++ I+ HE+G
Sbjct: 140 GGLKRNLEAGEIVAQAVHVQKALDEMGERVSSVVIMGIGEPFDNYDQMLSFLKIINHEKG 199
Query: 297 LHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 355
L+ R +TVSTSG++P++ QF +E+ A+SL+A +E+R+ +MPINR YKL LIE
Sbjct: 200 LNIGARHITVSTSGIIPKIYQFADENLQINFAISLHAPNNELRSKLMPINRAYKLPDLIE 259
Query: 356 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP 415
++ + K +V FEY + GVNDS + A+ L L++ + C +NLI N +
Sbjct: 260 AVKYYIE-KTGRRVSFEYGLFGGVNDSVEHAEELAELIKDLKCHVNLIPVNYVPERNYVR 318
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
T ++ +F L G V +R G D AACGQL
Sbjct: 319 TPRSQIFKFEKTLKKHGINVTIRREHGHDIDAACGQL 355
>gi|254374354|ref|ZP_04989836.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
gi|151572074|gb|EDN37728.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
Length = 370
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 184/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E A+ + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ +ND
Sbjct: 214 SGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEIND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|295691362|ref|YP_003595055.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756]
gi|295433265|gb|ADG12437.1| radical SAM enzyme, Cfr family [Caulobacter segnis ATCC 21756]
Length = 403
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/350 (39%), Positives = 200/350 (57%), Gaps = 14/350 (4%)
Query: 114 VLLKGMSFTEL-QQWVRSHAFRPGQALMLWKRLYGDDIWAH---CTD--ELEGLNKDFKK 167
V L G++ +L V S G+A M +++ W H TD + + K+ +
Sbjct: 25 VNLSGLTRPQLIAALVESGVVEHGKAKMRATQIFR---WMHHRGVTDFASMSDVAKETRA 81
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L+E + + S DGTRK L + G+ +E+V IP +CVSSQVGC +
Sbjct: 82 RLAEAFTIARPEIVERQVSQDGTRKWLIRMAPGIEVESVFIPGVGRAGALCVSSQVGCTL 141
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVGSITNVVFMGMGEPLHNVE 282
NC FC+TG L R+LTAAEIV Q A+ L E ++N+VFMGMGEPL+N+
Sbjct: 142 NCSFCHTGTQPLVRNLTAAEIVAQVQVAKDDLGEWPSDKEDRQLSNIVFMGMGEPLYNLG 201
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
V A I+ +G+ S R++TVSTSG+VP L++ + + LA+SL+AT D +R+ ++
Sbjct: 202 QVADAIEIISDNEGIGISRRRITVSTSGVVPMLEKLGSTTQAMLAISLHATNDALRDVLV 261
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
P+N+KY + L+ +R N +V FEYVML GVNDS +A+ L+ L++GIP KINL
Sbjct: 262 PLNKKYPIAELMAGIRAYPGLSNARRVTFEYVMLKGVNDSPPEARALVNLIKGIPAKINL 321
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP GS + + + F IL AG + +R RG D +AACGQL
Sbjct: 322 IPFNPWPGSDYQCSDWATIEAFAAILNKAGYSSPIRTPRGRDILAACGQL 371
>gi|305432592|ref|ZP_07401753.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
gi|419535816|ref|ZP_14075308.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
111-3]
gi|419538306|ref|ZP_14077666.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
90-3]
gi|419554188|ref|ZP_14092334.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2698]
gi|419555706|ref|ZP_14093717.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
84-2]
gi|419562903|ref|ZP_14100392.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1091]
gi|419565007|ref|ZP_14102366.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1098]
gi|419565801|ref|ZP_14103071.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1148]
gi|419569561|ref|ZP_14106621.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
7--1]
gi|419572150|ref|ZP_14109081.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
132-6]
gi|419573632|ref|ZP_14110425.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1891]
gi|419575291|ref|ZP_14111984.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1909]
gi|419577397|ref|ZP_14113951.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
59-2]
gi|419578947|ref|ZP_14115369.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1948]
gi|419581235|ref|ZP_14117542.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1957]
gi|419584001|ref|ZP_14120152.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1961]
gi|419585431|ref|ZP_14121485.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
202/04]
gi|419591514|ref|ZP_14126862.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
37/05]
gi|419593565|ref|ZP_14128779.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9854]
gi|419594321|ref|ZP_14129450.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23336]
gi|419597018|ref|ZP_14132008.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23341]
gi|419598916|ref|ZP_14133788.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23342]
gi|419600294|ref|ZP_14135055.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23344]
gi|419604316|ref|ZP_14138786.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9853]
gi|419608467|ref|ZP_14142657.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H6]
gi|304444303|gb|EFM36955.1| cfr family radical SAM enzyme [Campylobacter coli JV20]
gi|380518399|gb|EIA44495.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
90-3]
gi|380519766|gb|EIA45828.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
111-3]
gi|380533215|gb|EIA58166.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2698]
gi|380535824|gb|EIA60501.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
84-2]
gi|380539701|gb|EIA64055.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1091]
gi|380540635|gb|EIA64933.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1098]
gi|380548334|gb|EIA72242.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1148]
gi|380549197|gb|EIA73076.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
7--1]
gi|380551009|gb|EIA74628.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1891]
gi|380551913|gb|EIA75488.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
132-6]
gi|380553915|gb|EIA77410.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1909]
gi|380557406|gb|EIA80620.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
59-2]
gi|380558434|gb|EIA81613.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1948]
gi|380559776|gb|EIA82913.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1957]
gi|380561384|gb|EIA84322.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1961]
gi|380562142|gb|EIA85028.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
202/04]
gi|380568105|gb|EIA90588.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
37/05]
gi|380569878|gb|EIA92311.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9854]
gi|380574533|gb|EIA96633.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23341]
gi|380576278|gb|EIA98335.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23336]
gi|380576655|gb|EIA98707.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23342]
gi|380580393|gb|EIB02147.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9853]
gi|380583194|gb|EIB04767.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 23344]
gi|380585424|gb|EIB06778.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H6]
Length = 356
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|403049734|ref|ZP_10904218.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 361
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 201/350 (57%), Gaps = 21/350 (6%)
Query: 112 SRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCT-----DELEGLNK 163
++V L G S L+ + R FR Q L W H D++ NK
Sbjct: 4 NKVNLLGCSLETLENFFREINEPKFRAKQLLK----------WIHQKGVINFDDMSDFNK 53
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
D + L+ A +++I S +GT K L L G ++E V IP + R T+C+SSQ
Sbjct: 54 DLRHKLNTIAHITPPKIEEIHKSEEGTIKYLIKLTSGSMVEMVRIP-EKKRITLCISSQA 112
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVEN 283
GCA+ C FC TG G + +L+A EI+ Q A SS+ +TN+VFMGMGEP+ N +
Sbjct: 113 GCALQCTFCATGAQGFESNLSANEIIGQVWLANFYNSSQ-QKVTNIVFMGMGEPMLNFKP 171
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
VI++A IM + S +++T+STSG+ PQ+ Q +E + +LA+SL+A D +R+ I+P
Sbjct: 172 VIESAKIMKDQMAYSLSRKRITISTSGITPQINQLSSEIDVSLAISLHAPIDSLRDKIVP 231
Query: 344 INRKYKLGLLIETLREEL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
IN+KY + LI++ ++ L ++ + EY+++ G+NDS D AK+L L+ + CKINL
Sbjct: 232 INKKYPIKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKKLARLLSDVSCKINL 291
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I FNP GS + ++ + + +F++IL G LR++RGD ACGQL
Sbjct: 292 IPFNPFEGSSYKRSSQKNIEQFKSILMSKGFITTLRVTRGDAVDGACGQL 341
>gi|238897947|ref|YP_002923627.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 393
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 193/330 (58%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDE---LEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + +NK + L + AE RA + +SSDG
Sbjct: 57 FRADQ-IMKW-------IYHYCYDDFSLMTDINKQLRDKLQKIAEIRAPEVAKEQSSSDG 108
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L+ +EI+
Sbjct: 109 TIKWAIKVGDQQV-ETVYIP-ESDRATLCVSSQVGCALECRFCSTAQQGFNRNLSVSEII 166
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ S ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT
Sbjct: 167 GQVWRAAKIIGSLKSKGQRPITNVVMMGMGEPLLNINNVVPAMAIMMDDFGFGLSKRRVT 226
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HF 363
+STSG+VP L + + + ALA+SL+A TD++RN ++PINRKY + L+ +R L
Sbjct: 227 LSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNELVPINRKYNIETLLAAVRRYLTKSN 286
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML VNDS A +L ++ PCKINLI +NP G+ + +++ ++
Sbjct: 287 ANQGRVTIEYVMLNHVNDSLKQAHQLADCLKNTPCKINLIPWNPFPGADYGRSSNSRIDR 346
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L T +R +RG+D AACGQL
Sbjct: 347 FAKVLMQYDFTTIIRKTRGNDIDAACGQLA 376
>gi|237654050|ref|YP_002890364.1| radical SAM protein [Thauera sp. MZ1T]
gi|237625297|gb|ACR01987.1| radical SAM enzyme, Cfr family [Thauera sp. MZ1T]
Length = 382
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/346 (41%), Positives = 195/346 (56%), Gaps = 28/346 (8%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA-LSLKDILTSSDGTR 191
FR Q +M W G D + TD + K + L + A R + ++D + S+DGTR
Sbjct: 29 FRARQ-VMRWMHHEGCDDFDAMTD----VAKSLRAKLKDLAVIRPPVPVRDSI-SADGTR 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + + +ETV IP R T+CVSSQ GCA++C FC TG+ G R+L+AAEI+ Q
Sbjct: 83 KWLLDVGNANAVETVFIP-ETSRGTLCVSSQAGCALDCAFCSTGKQGFNRNLSAAEIIGQ 141
Query: 252 AVFARRLLSS------------EVGS------ITNVVFMGMGEPLHNVENVIKAANIMVH 293
A +LL + E G I+NVV MGMGEPL N +NV+ A +M+
Sbjct: 142 LWLANKLLGAARADAEEHATDLEAGEKDNGRIISNVVMMGMGEPLANFDNVVTALRLMLD 201
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353
+ S R+VTVSTSG+VP + + +E ALAVSL+A+ D +R+ ++PIN+KY L L
Sbjct: 202 DHAYGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHASNDALRDRLVPINQKYPLREL 261
Query: 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 413
+ + L V FEYVML GVNDS A+ L+ LV+ PCK NLI FNP S F
Sbjct: 262 MAACQRYLERAPRDFVTFEYVMLEGVNDSDAHARELVALVRDTPCKFNLIPFNPFPDSGF 321
Query: 414 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
+ E++ F IL AG R +RGDD AACGQL G +Q
Sbjct: 322 QRSPAERIRRFAGILIDAGIVTTTRKTRGDDVDAACGQLA--GQVQ 365
>gi|404375858|ref|ZP_10981038.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
1_1_43]
gi|404290621|gb|EJZ47528.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
1_1_43]
Length = 384
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEQAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|386829559|ref|ZP_10116666.1| 23S rRNA m2A2503 methyltransferase [Beggiatoa alba B18LD]
gi|386430443|gb|EIJ44271.1| 23S rRNA m2A2503 methyltransferase [Beggiatoa alba B18LD]
Length = 375
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 186/315 (59%), Gaps = 17/315 (5%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLVIETVVIPCNR 212
DE+ +K ++ L A ++L ++T S+DGTRK L L DG IETV IP
Sbjct: 46 DEMTNFSKALRQRLQTVA---CITLPKVVTTQKSADGTRKWLLQLADGNCIETVFIP-ED 101
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--------VG 264
R T+CVSSQVGCA++C+FC T + G R+LT EI+ Q A L +E
Sbjct: 102 DRGTLCVSSQVGCALDCRFCATAQQGFNRNLTLGEIIAQLWLAEHELRAEGYQLDESYAR 161
Query: 265 SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNC 324
I+NVV MGMGEPL N +V+KA +M+ + S R++T+ST+G+VP L + E
Sbjct: 162 VISNVVMMGMGEPLANFNHVVKAMKLMMDDFAYGLSWRRITLSTAGIVPALLRLKEECPV 221
Query: 325 ALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFD 384
LAVSL+AT DE+RN ++PIN+KY + L+ R + N +V FEYVML G+ND+
Sbjct: 222 NLAVSLHATNDELRNQLVPINQKYPIAELLAACRAYVEEDNRRRVTFEYVMLKGINDTPA 281
Query: 385 DAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444
A+ L+ L+ +P K+NLI FNP + F + ++ FR+IL AG R +RGDD
Sbjct: 282 HARALVKLLSHVPSKVNLIPFNPFPQTGFERSDPARIETFRDILIQAGMITLTRKTRGDD 341
Query: 445 QMAACGQLGNPGAIQ 459
AACGQL G +Q
Sbjct: 342 IDAACGQLA--GKVQ 354
>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|415822426|ref|ZP_11511054.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|417188986|ref|ZP_12012544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|417207662|ref|ZP_12019883.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|417592852|ref|ZP_12243547.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|419198017|ref|ZP_13741403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|419204532|ref|ZP_13747712.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|419222526|ref|ZP_13765447.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|419887608|ref|ZP_14408182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|419894069|ref|ZP_14414009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|420087423|ref|ZP_14599393.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
gi|420097590|ref|ZP_14608885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|345337027|gb|EGW69460.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|378046574|gb|EHW08953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|378047653|gb|EHW10015.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|378065101|gb|EHW27251.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|386192531|gb|EIH81255.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|386196976|gb|EIH91184.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|388362476|gb|EIL26483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|388365275|gb|EIL29078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|394383752|gb|EJE61339.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|394393294|gb|EJE69983.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
Length = 384
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRDKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|327398526|ref|YP_004339395.1| ribosomal RNA large subunit methyltransferase N [Hippea maritima
DSM 10411]
gi|327181155|gb|AEA33336.1| Ribosomal RNA large subunit methyltransferase N [Hippea maritima
DSM 10411]
Length = 342
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 196/342 (57%), Gaps = 9/342 (2%)
Query: 119 MSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRAL 178
+ + EL+ + + +A ++ LY I D++ L K+ ++ L E +
Sbjct: 7 LEYDELKSILIGLGYEKYRAEQIFSFLYKQRIEGF--DDITVLKKEVRRQLKEQFFIYKI 64
Query: 179 SLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG 238
K + DGT+K LF L+DG++IE+V+IP R T+CVS+Q GC M C+FC TGRMG
Sbjct: 65 EEKTSYAADDGTKKYLFKLNDGMLIESVLIPMEANRFTICVSTQAGCRMGCKFCATGRMG 124
Query: 239 LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 298
KR+L+ +EIV Q V+ +L NVV+MGMGEPL N EN +K+ I+ ++GL
Sbjct: 125 FKRNLSTSEIVSQVVY---ILKVNNLKTANVVYMGMGEPLDNYENTVKSIKILSDDRGLS 181
Query: 299 FSPRKVTVSTSGLVPQLKQFLNE-SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R++T+ST+G+ P + + + N +A+SL++ + R+ IMPIN Y + ++ L
Sbjct: 182 ISKRRITLSTAGITPGVNKLKKDLPNINMALSLHSIISKKRSMIMPINDTYPIDEVLNEL 241
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH--CGSQFTP 415
+ + ++ FEYVM+ G+ND+ DD K L+ ++ CK+N+I N H G++F P
Sbjct: 242 K-DFPMPRRKRITFEYVMIKGINDTKDDLKALLKVMSNFKCKLNIIPLNKHDLLGTKFEP 300
Query: 416 TTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGA 457
T +++ EF + L G V +R S+G AACG L +
Sbjct: 301 TPMDRIEEFADYLRNKGMFVTIRKSKGSSINAACGMLATKAS 342
>gi|334125110|ref|ZP_08499104.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|419958889|ref|ZP_14474947.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
gi|449474378|ref|XP_004154155.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like
[Cucumis sativus]
gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
gi|333387680|gb|EGK58874.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|388606192|gb|EIM35404.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
Length = 388
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 207/358 (57%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + TD +
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTD----I 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + G+ ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A L L++
Sbjct: 246 RDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|419651486|ref|ZP_14182582.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-894]
gi|380631085|gb|EIB49295.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
jejuni subsp. jejuni 2008-894]
Length = 356
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSNLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDAEGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ +GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRINIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
+ND + AK L+ L+ GI K+NLI FNPH G + + E +I+F+++L+ G T
Sbjct: 274 DSINDKLEHAKELVKLLNGIKAKVNLILFNPHEGGLYKRPSLENVIKFQDLLSNKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|386823492|ref|ZP_10110640.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica PRI-2C]
gi|421785006|ref|ZP_16221440.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica A30]
gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|386379610|gb|EIJ20399.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica PRI-2C]
gi|407752723|gb|EKF62872.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica A30]
Length = 398
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 210/362 (58%), Gaps = 20/362 (5%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE- 159
++N +++ L ++ +++++ +P +A +M W I+ +C D+ E
Sbjct: 21 SVNAETPAAAKINLLDLNRQQMREFFAKMGEKPFRADQVMKW-------IYHYCCDDFEQ 73
Query: 160 --GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
+NK + L AE RA + + S+DGT K + D V ETV IP + R T+
Sbjct: 74 MTDINKVLRNKLQSVAEIRAPEVAEEQRSADGTIKWAITVGDQQV-ETVFIP-DGDRATL 131
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMG 273
CVSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MG
Sbjct: 132 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERPITNVVMMG 191
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAP 251
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIG 391
D++R+ I+PINRKY + + +R L N +V EYVML +NDS DDA +L
Sbjct: 252 NDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLAE 311
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
+++ PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQ
Sbjct: 312 VLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQ 371
Query: 452 LG 453
L
Sbjct: 372 LA 373
>gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
HI4320]
gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|425068640|ref|ZP_18471756.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW6]
gi|425071894|ref|ZP_18475000.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW4]
gi|254807194|sp|B4EZT6.1|RLMN_PROMH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|404598263|gb|EKA98749.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW4]
gi|404599019|gb|EKA99481.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW6]
Length = 393
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 197/330 (59%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + +NK + L E AE +A + + S+DG
Sbjct: 49 FRADQ-IMKW-------IYHYCYDDFDQMTDINKVLRAKLKEIAEIKAPEVSEEQRSADG 100
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K + V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 101 TIKWAIKVGSQQV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEII 158
Query: 250 EQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ + E G ITNVV MGMGEPL N+ NVI A IM+ + G S R+VT
Sbjct: 159 GQVWRAAKIIGALKETGRRPITNVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRVT 218
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HF 363
VSTSG+VP L + + + ALA+SL+A TD++R+ I+PIN+KY + + ++ +R +
Sbjct: 219 VSTSGVVPALDKLADAVDVALAISLHAPTDDIRDEIVPINKKYNIEMFLDGVRRYIAKSN 278
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +NDS + A +L ++ PCKINLI +NP G+ + +++ ++
Sbjct: 279 ANQGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRIDR 338
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 339 FSKVLMEYGFTTIVRKTRGDDIDAACGQLA 368
>gi|422031852|ref|ZP_16377997.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|427552549|ref|ZP_18928490.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|427569106|ref|ZP_18933208.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|427589368|ref|ZP_18938001.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|427612789|ref|ZP_18942863.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|427637095|ref|ZP_18947765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|427656844|ref|ZP_18952524.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|427662098|ref|ZP_18957436.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|427672719|ref|ZP_18962252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
gi|414017601|gb|EKT01308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|414018305|gb|EKT01968.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|414031052|gb|EKT14130.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|414032534|gb|EKT15537.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|414035751|gb|EKT18608.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|414045819|gb|EKT28186.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|414046455|gb|EKT28782.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|414051403|gb|EKT33506.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|414058564|gb|EKT40224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
Length = 388
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 210/357 (58%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLN 162
V+P K +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +N
Sbjct: 14 VVPNKETKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMY-----HYCCDNFDEMTDIN 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQ
Sbjct: 69 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQ 126
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKVTGQRPITNVVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 187 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 247 DEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKET 306
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|257461212|ref|ZP_05626310.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
gi|257441586|gb|EEV16731.1| radical SAM enzyme, Cfr family [Campylobacter gracilis RM3268]
Length = 369
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 200/347 (57%), Gaps = 22/347 (6%)
Query: 120 SFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALS 179
+ EL+ +V FR Q +++ +Y ++ ++ L K+ ++ L+++ L
Sbjct: 8 TMKELENFVEPK-FRAKQ---IYEWIYKKNVDDFA--QMLNLPKEIRQSLAQNFYLDPLK 61
Query: 180 LKDILTSSDGTRKILFMLDDGLVIETVVIPCN------------RGRTTVCVSSQVGCAM 227
TSSDG+ K LF L DG IE+V++P R ++CVSSQVGC +
Sbjct: 62 CVRSETSSDGSIKYLFALKDGKTIESVLLPMKDELRDENEKIIRHARYSICVSSQVGCKI 121
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKA 287
C FC T + G R+LT EIV Q +++ + NVV+MGMGEPL+N++NV KA
Sbjct: 122 GCSFCLTAKGGFVRNLTPGEIVAQIWLIKKMNAIPYERRVNVVYMGMGEPLNNLDNVAKA 181
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPIN 345
I+ GL +PR+ T+STSGL Q+K+ L E + LA+SL+A DE+R +MPIN
Sbjct: 182 VQILKENDGLAIAPRRQTISTSGLSTQIKK-LGEMDLGVLLAISLHAVDDELREKLMPIN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
R Y + +++ +R E +V+FEY+M+ GVND DAK L+ L+ GI K+NLI F
Sbjct: 241 RAYNIASIMQAVR-EFPIDLRKRVMFEYLMIDGVNDRPSDAKTLVKLLHGIRAKVNLIYF 299
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NPH GS F + E MI+F++ L G T +R S+G D AACGQL
Sbjct: 300 NPHEGSSFGRPSPENMIKFQDYLCAHGITCTIRQSKGLDISAACGQL 346
>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
Length = 388
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 207/358 (57%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + TD +
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTD----I 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + G+ ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A L L++
Sbjct: 246 RDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|423141156|ref|ZP_17128794.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379053710|gb|EHY71601.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 388
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 210/360 (58%), Gaps = 16/360 (4%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELE 159
N V+P +++ L ++ +++++ ++ +P +A + K +Y +C D E+
Sbjct: 11 NTPVVPNNEAKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMY-----HYCCDNFDEMT 65
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
+NK + L E AE RA + + S+DGT K + D V ETV IP + R T+CV
Sbjct: 66 DINKVLRGKLKEVAEIRAPEVVEEQRSADGTIKWAIAVGDQRV-ETVYIPED-DRATLCV 123
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMG 275
SSQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMG
Sbjct: 124 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMG 183
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D
Sbjct: 184 EPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPND 243
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
+R+ I+PIN+KY + + +R L N +V EYVML VND D A +L L+
Sbjct: 244 AIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTDHAHQLAELL 303
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 304 KETPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|154175427|ref|YP_001407355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter
curvus 525.92]
gi|402546570|ref|ZP_10843445.1| 23S rRNA m2A2503 methyltransferase [Campylobacter sp. FOBRC14]
gi|205829690|sp|A7GVW3.1|RLMN_CAMC5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|112802451|gb|EAT99795.1| radical SAM enzyme, Cfr family [Campylobacter curvus 525.92]
gi|401017383|gb|EJP76144.1| 23S rRNA m2A2503 methyltransferase [Campylobacter sp. FOBRC14]
Length = 371
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 200/347 (57%), Gaps = 22/347 (6%)
Query: 120 SFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALS 179
+ +EL+ + S FR Q +++ +Y + A DE+ L KD + L++ F L
Sbjct: 8 TLSELEA-ILSPKFRAKQ---IYEWIYKKN--AENFDEMLNLPKDMRTNLAQEFYFDPLY 61
Query: 180 LKDILTSSDGTRKILFMLDDGLVIETVVIPCNR------------GRTTVCVSSQVGCAM 227
SSDG+ K LF L DG IE+V++P R T+CVSSQVGC M
Sbjct: 62 CVKFEESSDGSIKYLFALKDGNTIESVLLPMKEVEVDEGGNISRHARYTICVSSQVGCKM 121
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKA 287
C FC T + GLKR+L+ EIV Q ++ ++ NVV+MGMGEPL N+ NV KA
Sbjct: 122 GCLFCLTAKGGLKRNLSPGEIVGQILWIKKTNHIPYERRVNVVYMGMGEPLDNLANVAKA 181
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPIN 345
I+ GL SPR+ TVSTSGL Q+K+ L E + LA+SL+A T+E+R+ +MP+N
Sbjct: 182 IQILKEPDGLAISPRRQTVSTSGLGAQIKK-LGEMDLGVLLAISLHAVTNELRSKLMPVN 240
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
+ Y + +++ +R +V+FEY+++ G+NDS DAK L+ L+ GI K+NLI F
Sbjct: 241 KAYNIEAVMDAVR-GFPIDMRKRVMFEYLVIRGMNDSVKDAKTLVKLLHGIKAKVNLIYF 299
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
NPH GS++ M+EF+ L G T +R S+G D AACGQL
Sbjct: 300 NPHEGSEYGRPELADMLEFQEYLRAHGVTCTIRQSKGLDISAACGQL 346
>gi|325981894|ref|YP_004294296.1| ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
AL212]
gi|325531413|gb|ADZ26134.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
AL212]
Length = 366
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 187/329 (56%), Gaps = 14/329 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G + D + L K ++ L+ A ++ ++DGTRK
Sbjct: 25 FRARQ-LLRWIHQFGIADF----DLMSDLAKGLREKLATQAVIELPTIMSDYVAADGTRK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G IETV IP R T+C+SSQVGCA+ C FC TG+ G R+LT AEI+ Q
Sbjct: 80 WLLSVGAGNGIETVFIP-EISRGTLCISSQVGCALACTFCSTGKQGFNRNLTVAEIIGQL 138
Query: 253 VFARRLLSS--------EVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A ++L + ++TNVV MGMGEPL N ENV+ A ++M+ + S R+V
Sbjct: 139 WIANKMLETCGDDTKLQTKRAVTNVVMMGMGEPLANFENVVTALDLMLDDHAYGLSRRRV 198
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
TVSTSGLVP + + ALAVSL+A D +R+ ++PIN+KY + L+ + L
Sbjct: 199 TVSTSGLVPAIDRLRERCPVALAVSLHAPNDTLRDQLVPINKKYPIKELLAACQRYLSAA 258
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEYVML G+NDS A L+ LVQ IPCK NLI FN S + ++ E + F
Sbjct: 259 PRDFITFEYVMLDGINDSVAHACELVKLVQDIPCKFNLIPFNSFSDSGYKRSSTEAIRVF 318
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
R++L AG +R +RGDD AACGQL
Sbjct: 319 RDVLVHAGLITTVRKTRGDDIAAACGQLA 347
>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
gi|205829755|sp|A4WD95.1|RLMN_ENT38 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
Length = 388
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 207/355 (58%), Gaps = 14/355 (3%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKD 164
+P K ++ L ++ +++++ +P +A +M W Y D + D++ +NK
Sbjct: 15 VPNKNGKINLLDLNRQQMREFFLEMGEKPFRADQVMKWMYHYCSDNF----DDMTDINKV 70
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L + AE RA + + S+DGT K + D V ETV IP R T+CVSSQVG
Sbjct: 71 LRNKLKDVAEIRAPEVVEEQRSADGTIKWAIAVGDQRV-ETVYIP-EEDRATLCVSSQVG 128
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEPLHN 280
CA+ C+FC T + G R+L +EI+ Q A +++ + G+ ITNVV MGMGEPL N
Sbjct: 129 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEPLLN 188
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+
Sbjct: 189 LTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDE 248
Query: 341 IMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
I+P+N+KY + + +R L N +V EYVML VND D A +L L++ PC
Sbjct: 249 IVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLAELLKDTPC 308
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 309 KINLIPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLA 363
>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|417673263|ref|ZP_12322718.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
Length = 384
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYERSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|83747944|ref|ZP_00944975.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
gi|207743447|ref|YP_002259839.1| hypothetical protein 48 [Ralstonia solanacearum IPO1609]
gi|83725362|gb|EAP72509.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
gi|206594844|emb|CAQ61771.1| conserved hypothetical protein 48 [Ralstonia solanacearum IPO1609]
Length = 383
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 187/329 (56%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGAADFGEMTD----LAKSLREKLATRATIQAPAVISDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EIV Q
Sbjct: 81 KWLVDVGAGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIVGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVNDS + A+ L+ ++ +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDSVEHARELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|407715866|ref|YP_006837146.1| ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
gi|407256202|gb|AFT66643.1| Ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
Length = 359
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 194/338 (57%), Gaps = 13/338 (3%)
Query: 117 KGMS--FTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAE 174
KG+ FTE+ + FR Q L W G + T+ ++K + L++ AE
Sbjct: 13 KGLETFFTEIGE----KPFRAKQVLK-WIHQEGISDFELMTN----ISKGLRTHLADIAE 63
Query: 175 FRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYT 234
R + S DGT K + LD IETV IP GR T+CVSSQVGCA+ C FC T
Sbjct: 64 VRVPEIVFEQKSDDGTYKWVLELDGQNRIETVFIP-EEGRGTLCVSSQVGCALECTFCST 122
Query: 235 GRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE 294
G R+L+ AEI+ Q A + L + ++TNVV MGMGEPL N N + A N+M+ +
Sbjct: 123 ATQGFNRNLSVAEIIGQVWVAVKALKGK-ANLTNVVMMGMGEPLLNFNNTVTALNLMMDD 181
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354
+ R+VTVSTSG+VP + + S+ +LAVSL+A DE+RN ++PIN+KY + L+
Sbjct: 182 FAYGLAKRRVTVSTSGVVPAMYRLAEVSDASLAVSLHAPNDELRNELVPINKKYPIAELL 241
Query: 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
E + + + K+ FEYVML+GVNDS + A L L+ +P K+NLI FNP + +
Sbjct: 242 EACKYYIKGEKRRKITFEYVMLSGVNDSVEQAHELKRLLADVPSKVNLIPFNPFPNTHYK 301
Query: 415 PTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+++ + F N+L AG R +RGDD AACGQL
Sbjct: 302 RSSNNAIHRFTNVLKEAGLITTTRKTRGDDIDAACGQL 339
>gi|419612218|ref|ZP_14146099.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H9]
gi|380590876|gb|EIB11878.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H9]
Length = 356
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-TFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|241206731|ref|YP_002977827.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860621|gb|ACS58288.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 409
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 208/383 (54%), Gaps = 37/383 (9%)
Query: 102 DNINVLPKKGSRVL-------LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GD 148
D I+V+ + R L G+S E+ +R Q M LW +Y G
Sbjct: 5 DAIDVITSQAPRAASGVEKPSLIGLSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGV 64
Query: 149 DIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVI 203
+ H T+ + KD ++ML +H + + S+DGTRK L + I
Sbjct: 65 SDFDHMTN----VAKDMREMLKQHFTIERPEIVEEQVSNDGTRKWLLRFPARGAGRPVEI 120
Query: 204 ETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR------ 257
E V IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR
Sbjct: 121 EAVYIP-EEGRGTLCLSSQVGCTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFP 179
Query: 258 --------LLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309
++ +E ++N+V MGMGEPL+N + V +A I GL S R+VT+STS
Sbjct: 180 DREAPQGTIMPAEGRKVSNIVMMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTS 239
Query: 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369
G+VP++ + E LA+SL+A D++R+ ++PIN+KY L LIE R N ++
Sbjct: 240 GVVPEIFRTGEEIGVMLAISLHAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRI 299
Query: 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429
FEYVML VNDS +DAK LI L++G+P KINLI FNP G+ + + E++ +F + +
Sbjct: 300 TFEYVMLKDVNDSLEDAKGLIKLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFIN 359
Query: 430 GAGCTVFLRLSRGDDQMAACGQL 452
AG +R RG D +AACGQL
Sbjct: 360 SAGYASPIRTPRGRDILAACGQL 382
>gi|312962908|ref|ZP_07777395.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens WH6]
gi|311282935|gb|EFQ61529.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens WH6]
Length = 382
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGIDDF----DAMTNVSKALRDKLKTI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVISAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAIEMIELLKNTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|386834961|ref|YP_006240278.1| radical SAM enzyme, Cfr family [Pasteurella multocida subsp.
multocida str. 3480]
gi|385201664|gb|AFI46519.1| radical SAM enzyme, Cfr family [Pasteurella multocida subsp.
multocida str. 3480]
Length = 394
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 207/351 (58%), Gaps = 14/351 (3%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
++ L ++ +++++ + +P +A L+ W +G+D + D + +NK +
Sbjct: 25 AKKINLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNF----DNMTNINKKLRDK 80
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L + AE +A + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 81 LKQVAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALA 138
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVENV 284
C FC T + G R+LT +EI+ Q A +++ + V ITNVV MGMGEPL NV NV
Sbjct: 139 CTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANV 198
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + S R+VT+STSG+VP L + + ALA+SL+A DE+R+ I+PI
Sbjct: 199 VPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVPI 258
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N+KY + +L++++ L N+ KV EYVML VND + A +L +++ IPCKINL
Sbjct: 259 NKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKNIPCKINL 318
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLA 369
>gi|182677752|ref|YP_001831898.1| radical SAM protein [Beijerinckia indica subsp. indica ATCC 9039]
gi|205829669|sp|B2IGZ5.1|RLMN_BEII9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|182633635|gb|ACB94409.1| radical SAM enzyme, Cfr family [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 391
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 188/333 (56%), Gaps = 24/333 (7%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
+W +Y I D + + K + L+ H + S DGTRK L L
Sbjct: 45 VWHWIYFHGI--RSFDTMLNVGKGLRTTLAAHYSLERPQVVSEQVSVDGTRKWLIRLPPV 102
Query: 198 ---DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
D G +E V IP R T+C+SSQVGC + C FC+TG L R+L+A EIV Q V
Sbjct: 103 DAQDRGAEVECVYIP-ESDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLSAREIVSQLVV 161
Query: 255 ARRLLSSEVG---------------SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
AR L G ITN+VFMGMGEPL+N +NV KA +++ +GL
Sbjct: 162 AREKLGDFPGLVPPKDGLLPTEGNRPITNIVFMGMGEPLYNFDNVRKAVSVLSDGEGLSL 221
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R++TVST+G+VPQ++ E+ LAVSL+A D++R+ ++P+N+KY + L+E R
Sbjct: 222 SRRRITVSTAGVVPQMEALGREAGSMLAVSLHAVRDDLRDKLVPLNKKYPIKTLLEACRT 281
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N ++ FEYVML +NDS +A+ LI L++GIP KINLI FNP G+ + + +
Sbjct: 282 YPGASNARRITFEYVMLKDINDSPAEARELIRLLKGIPAKINLIPFNPWPGAPYDCSDWD 341
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ F +I+ AG +R RG D +AACGQL
Sbjct: 342 RIERFSDIVFNAGYASPVRTPRGRDILAACGQL 374
>gi|408480037|ref|ZP_11186256.1| hypothetical protein PsR81_05719 [Pseudomonas sp. R81]
Length = 382
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + SSDGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NVI A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVISAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ PCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKDTPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQL 348
>gi|388543571|ref|ZP_10146861.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas sp. M47T1]
gi|388278128|gb|EIK97700.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas sp. M47T1]
Length = 379
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++Q+ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 7 LLGLTQPEMEQFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKLKAC 61
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 62 AEIRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 120
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI----TNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S +I TNVV MGMGEPL N +NVI A
Sbjct: 121 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVIAAM 180
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
+M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 181 RLMMDDLGYGISKRRVTLSTSGVVPMIDVLADHIDVSLALSLHAPNDALRNQLVPINKKY 240
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L VND + A ++ L++ +PCK+NLI FNP
Sbjct: 241 PLKMLLESCQRYMSQLGEKRVLTIEYTLLKDVNDKLEHAVEMVELLKNVPCKVNLIPFNP 300
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 301 FPHSGYERPSNNAIRRFQDHLHQAGFNVTVRTTRGEDIDAACGQL 345
>gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|422017490|ref|ZP_16364055.1| ribosomal RNA large subunit methyltransferase N [Providencia
alcalifaciens Dmel2]
gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|414105640|gb|EKT67197.1| ribosomal RNA large subunit methyltransferase N [Providencia
alcalifaciens Dmel2]
Length = 399
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 194/330 (58%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + +NK + L E AE RA + D SSDG
Sbjct: 55 FRADQ-VMKW-------IYHYCFDDFDQMTDINKVLRAKLKEVAEIRAPEVADEQRSSDG 106
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K + D LV ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 107 TIKWAIKVGDQLV-ETVYIP-EADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 164
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ S S ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT
Sbjct: 165 GQVWRAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVT 224
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365
+STSG+VP L + + + ALA+SL+A TD+VR+ I+PIN+KY + + ++ L N
Sbjct: 225 ISTSGVVPALDKLGDMIDVALAISLHAPTDDVRDEIVPINKKYNIETFLASVNRYLTKSN 284
Query: 366 NY--KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
+V EYVML +NDS + A +L ++ P KINLI +NP G+ + +++ ++
Sbjct: 285 ANAGRVTVEYVMLDHINDSVEQAHQLAECLKNTPSKINLIPWNPFPGAPYGRSSNSRIDR 344
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 345 FSKVLMEYGFTTIVRKTRGDDIDAACGQLA 374
>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|419921561|ref|ZP_14439613.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|432534838|ref|ZP_19771810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|388397512|gb|EIL58490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|431059593|gb|ELD68946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
Length = 384
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|268678701|ref|YP_003303132.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
gi|268616732|gb|ACZ11097.1| radical SAM enzyme, Cfr family [Sulfurospirillum deleyianum DSM
6946]
Length = 358
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 195/349 (55%), Gaps = 20/349 (5%)
Query: 119 MSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRAL 178
+S EL + ++ AFR Q +++ LY + DE++ L K+ K+ L+E L
Sbjct: 9 LSKEELSEVIKP-AFRAKQ---IYQWLYQK--YVTSFDEMKNLPKELKEQLNETYYLDPL 62
Query: 179 SLKDILTSSDGTRKILFMLDDGLVIETVVIP------------CNRGRTTVCVSSQVGCA 226
+ I S DG++K LF L D +E V++P + R T+C+SSQVGC
Sbjct: 63 RIVTIEESCDGSKKYLFALKDNQTVEAVLLPMKQEQVDEEGKLVHHARYTICISSQVGCK 122
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286
+ C FC TG+ G KR+LTA EI Q + +R + N+V+MGMGEPL N+ NV K
Sbjct: 123 IGCAFCLTGKSGFKRNLTAGEITTQVLMIKRDNAIAENRRVNIVYMGMGEPLDNLTNVSK 182
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN-ESNCALAVSLNATTDEVRNWIMPIN 345
A I GL SPR+ T+STSGL Q+++ + LA+SL+A D++R +MPIN
Sbjct: 183 AVRIFSDLDGLSISPRRQTISTSGLSSQIEKLGKMDLGILLAISLHAVDDDLRQKLMPIN 242
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
+ Y + ++ +R +V+FEY+++ GVND AK+L+ L+ GI K+NLI F
Sbjct: 243 KAYNIESIMNAVR-GFPIDARKRVMFEYLVMKGVNDDQKSAKKLVKLLHGIKAKVNLIYF 301
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGN 454
NPH GS F + + MI F+ L G +R S+G D AACGQL +
Sbjct: 302 NPHAGSDFDRPSTKDMIAFQQYLVDHGVLCTIRQSKGLDISAACGQLKD 350
>gi|429462724|ref|YP_007184187.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811522|ref|YP_007447977.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338238|gb|AFZ82661.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776680|gb|AGF47679.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 373
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 188/326 (57%), Gaps = 20/326 (6%)
Query: 151 WAH-----CTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H DE+ L+ + L A+ A+ LK S DGTRK LF +ET
Sbjct: 38 WIHRRQVSSFDEMTNLSMKLRDYLKTIAKIEAMPLKTQQFSMDGTRKWLFDAGFDNAVET 97
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS 265
V IP + R T+C+SSQ GCA+NC FC+TG+ G R+LT +EI+ Q +A++ ++++ S
Sbjct: 98 VFIP-DSNRNTLCISSQAGCAVNCSFCFTGQQGFNRNLTTSEIIGQLWWAQKNINNDFFS 156
Query: 266 ------------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP 313
ITN+V MGMGEPL N VI A +M+ E S RK+T+STSG+VP
Sbjct: 157 GNLDKSIINSPKITNIVMMGMGEPLLNYSQVIPALRLMMDENSYALSKRKITLSTSGIVP 216
Query: 314 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 373
+ + +N+ +LA+SL+A DE+R+ ++PIN+KY L L+++ R + + + FEY
Sbjct: 217 MIDKLVNDCPVSLAISLHAPNDELRDKLIPINKKYPLQELMKSCRNYVSYAPRDFITFEY 276
Query: 374 VMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGC 433
ML +NDS A LI LV+ I CKINLI FN S +T +++ F IL G
Sbjct: 277 CMLDNINDSDKHAFELIELVRTIKCKINLIPFNSFPNSNLKRSTQNRILSFVKILNSQGI 336
Query: 434 TVFLRLSRGDDQMAACGQLGNPGAIQ 459
+R +RGDD AACGQL G+I+
Sbjct: 337 VTTVRKTRGDDINAACGQLA--GSIK 360
>gi|78358007|ref|YP_389456.1| ribosomal RNA large subunit methyltransferase N [Desulfovibrio
alaskensis G20]
gi|123727640|sp|Q30X35.1|RLMN_DESDG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78220412|gb|ABB39761.1| radical SAM enzyme, Cfr family [Desulfovibrio alaskensis G20]
Length = 358
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 203/341 (59%), Gaps = 11/341 (3%)
Query: 119 MSFTELQQW-VRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRA 177
++F EL+ + V + +A +W+ L+ + D++ ++K + L EHA
Sbjct: 7 LTFEELETFLVEKLGEKKFRARQIWQWLWNK--YVRDFDQMTNVSKQTRAQLKEHARIFW 64
Query: 178 LSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM 237
+ S DGT K L L DG ++ETV+IP ++GR T C+S QVGCAM C FC TG +
Sbjct: 65 PEVVTTSKSQDGTTKFLLRLADGALVETVLIPGSQGRITQCLSCQVGCAMGCTFCATGTL 124
Query: 238 GLKRHLTAAEIVEQAVFARRLLS--SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295
G +R++T +EI+ Q + AR L+ +E + N+VFMGMGEPL N++ ++++ + + E
Sbjct: 125 GFERNMTMSEILGQVLVAREYLNDVAERPILRNLVFMGMGEPLLNLDEIMRSLHTLNSEL 184
Query: 296 GLHFSPRKVTVSTSGLVPQLKQFLNESNCA-LAVSLNATTDEVRNWIMPINRKYKLGLLI 354
GL FSPR++TVST G+ P+ + L ES A LAVSL+A T E+R IMP +++L I
Sbjct: 185 GLQFSPRRITVSTCGVNPEGLRRLGESGLAYLAVSLHAPTQELRRTIMPKAARWELNDFI 244
Query: 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFT 414
E L + K ++ FEY++L GVNDS + AK+L+ LV K+NLI +NP G +
Sbjct: 245 EAL-QSYPLKTRERITFEYLLLGGVNDSLEHAKQLVRLVSRTKAKLNLIVYNPS-GDEAD 302
Query: 415 PT---TDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P T+E+++ F L T +R S+G D AACGQL
Sbjct: 303 PYAAPTEERILAFEQYLWSKHVTAIIRKSKGADIKAACGQL 343
>gi|384214221|ref|YP_005605384.1| hypothetical protein BJ6T_04980 [Bradyrhizobium japonicum USDA 6]
gi|354953117|dbj|BAL05796.1| hypothetical protein BJ6T_04980 [Bradyrhizobium japonicum USDA 6]
Length = 400
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 204/357 (57%), Gaps = 19/357 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKK 167
+R L G+S +EL + P Q M LW LY A D++ ++K +
Sbjct: 25 ARPSLIGLSRSELADRLGKIGVAPAQRKMRVQQLWHWLYFRG--AQSFDDMTSISKGIRA 82
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRTTVCVSS 221
L++H + S+DGTRK L L G +E V IP R T+CVSS
Sbjct: 83 ELAQHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVERAHEVECVYIP-ETDRGTLCVSS 141
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGS--ITNVVFMGMG 275
QVGC +NC FC+TG L R+LTA EIV Q + AR L+ E G+ +TN+V MGMG
Sbjct: 142 QVGCTLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADREDGTRRVTNIVMMGMG 201
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL+N + V A I+ +G+ S R++T+STSG+VP + + E LA+SL+A D
Sbjct: 202 EPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRD 261
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
E+RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDAK L+ L++G
Sbjct: 262 ELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKG 321
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I KINLI FNP G+ + + +++ +F + AG + +R RG D +AACGQL
Sbjct: 322 IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQL 378
>gi|416106782|ref|ZP_11590031.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348005984|gb|EGY46450.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 364
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + D + LNK ++ L AE +A + S+DGT K
Sbjct: 20 FRADQ-LVKWIYHFGEDNF----DNMTNLNKALREKLKTMAEIKAPEVAVEQRSADGTIK 74
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP RTT+CVSSQVGCA+ C FC T + G R+LT AEI+ Q
Sbjct: 75 WAMQVGDQQV-ETVYIP-EADRTTLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQV 132
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 133 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 192
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + ALA+SL+A DE+R+ I+P+N+KY + LI+++ L N+
Sbjct: 193 SGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANH 252
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 253 GKVTIEYVMLDHINDHVEHAHQLAAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQK 312
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 313 TLMEYGLTVIVRKTRGDDIDAACGQLA 339
>gi|423121604|ref|ZP_17109288.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5246]
gi|376393983|gb|EHT06637.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5246]
Length = 388
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 209/355 (58%), Gaps = 14/355 (3%)
Query: 107 LPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKD 164
+P K +++ L ++ +++++ ++ +P +A +M W Y D + D++ +NK
Sbjct: 15 VPNKDAKINLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCSDNF----DDMTDINKV 70
Query: 165 FKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVG 224
+ L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVG
Sbjct: 71 LRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVG 128
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHN 280
CA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N
Sbjct: 129 CALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGEPLLN 188
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+
Sbjct: 189 LTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDE 248
Query: 341 IMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398
I+PIN+KY + + ++R + N +V EYVML VND + A L L++ PC
Sbjct: 249 IVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKDTPC 308
Query: 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 309 KINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|347820223|ref|ZP_08873657.1| radical SAM enzyme, Cfr family protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 370
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 181/327 (55%), Gaps = 12/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W G + +D L K + L A AL L +SDGT K
Sbjct: 25 FRATQ-LFRWIHQRGASDFGAMSD----LAKALRSKLEGCARVEALPLISEQAASDGTLK 79
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
LF + DG +E V IP R T+CVSSQ GCA+ C+FC TG G R+LTA EIV Q
Sbjct: 80 WLFDVRDGNAVEAVFIP-EDDRGTLCVSSQAGCAVGCRFCSTGHQGFSRNLTAGEIVAQL 138
Query: 253 VFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
FA L G+ ITN+V MGMGEPL N +I A +M+ + G S R+VTVST
Sbjct: 139 WFAEHSLRKRFGTAERVITNLVMMGMGEPLQNYSALIPALRVMLDDHGYGLSRRRVTVST 198
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368
SG+VP L + + ALAVSL+A D +R+ ++P+NRKY + L++ + L
Sbjct: 199 SGVVPMLDRLAQDCPVALAVSLHAPNDPLRDKLVPLNRKYPIHELLQACKRYLVHAPRDF 258
Query: 369 VLFEYVMLAGVNDSFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+ FEY ML GVND A+ LI LV+G I CK NLI FNP S +T +++ F
Sbjct: 259 ITFEYCMLDGVNDQLAQARELIDLVRGAEIRCKFNLIPFNPFPASGLLRSTQNQLLAFAK 318
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L+ AG +R +RGDD AACGQL
Sbjct: 319 VLSDAGIVTTVRRTRGDDIDAACGQLA 345
>gi|59711233|ref|YP_204009.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
ES114]
gi|423685341|ref|ZP_17660149.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
gi|75354452|sp|Q5E775.1|RLMN_VIBF1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
gi|371495253|gb|EHN70849.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
Length = 372
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + SSDGT
Sbjct: 28 AFRADQ-VMKWMYHFGCDDF----DQMNNINKKLREKLKHKCEIRAPYVSEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EIV Q
Sbjct: 83 KWAMKVGDQDV-ETVYIP-DGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 IWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A TDE+R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPTDELRSQIMPINDRWDIDAFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+V EYV+L VND D A++L L++ P KINLI FNP+ GS + ++ ++ F
Sbjct: 261 RGRVTVEYVLLDHVNDDMDHARQLAELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFM 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMEYDYTVTIRKTRGDDIDAACGQL 347
>gi|332305581|ref|YP_004433432.1| radical SAM family protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410646698|ref|ZP_11357148.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola sp. 4H-3-7+YE-5]
gi|410133870|dbj|GAC05547.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
Length = 380
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 206/353 (58%), Gaps = 9/353 (2%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDF 165
V+ K +++ L + L+++ S +P +A + K +Y + D++ LNK
Sbjct: 4 VMSAKPTKINLLNFNRAGLREYFSSIGEKPFRADQVMKWIYQAGVSDF--DQMTNLNKAL 61
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGC 225
++ L E +A + ++DGT K L+ G +ETV IP + R T+CVSSQVGC
Sbjct: 62 REKLKMQCEVKAPEIAYQQGATDGTIKFALRLEGGQEVETVWIP-DADRATLCVSSQVGC 120
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQA--VFARRLLSSEVGS--ITNVVFMGMGEPLHNV 281
A+ C FC T + G R+L+ AEI+ Q V LS++ ITNVV MGMGEPL N+
Sbjct: 121 ALECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLLNL 180
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
+NV+ A ++M+ + S R+VT+STSG+VP L ++ + ALA+SL+A D +R+ I
Sbjct: 181 KNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDTLRDEI 240
Query: 342 MPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
+PIN+KY + + +R L N KV EYVML G+NDS D A L ++ P K
Sbjct: 241 VPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVLADTPSK 300
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
INLI FNP+ GS ++ +++ ++ F +L+ G V +R +RGDD AACGQL
Sbjct: 301 INLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|197336065|ref|YP_002155383.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
MJ11]
gi|254807222|sp|B5FAW9.1|RLMN_VIBFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
Length = 372
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + SSDGT
Sbjct: 28 AFRADQ-VMKWMYHFGCDDF----DQMNNINKKLREKLKNKCEIRAPYVSEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EIV Q
Sbjct: 83 KWAMKVGDQDV-ETVYIP-DGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 IWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A TDE+R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPTDELRSQIMPINDRWDIDAFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
+V EYV+L VND D A++L L++ P KINLI FNP+ GS + ++ ++ F
Sbjct: 261 RGRVTVEYVLLDHVNDDMDHARQLAELLKDTPAKINLIPFNPYPGSPYKKPSNSRIDRFM 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMEYDYTVTIRKTRGDDIDAACGQL 347
>gi|261868678|ref|YP_003256600.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769939|ref|ZP_11484554.1| hypothetical protein D17P2_1559 [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|444345782|ref|ZP_21153788.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261414010|gb|ACX83381.1| hypothetical protein D11S_2027 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348656972|gb|EGY74569.1| hypothetical protein D17P2_1559 [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443542515|gb|ELT52840.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 379
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + D + LNK ++ L AE +A + S+DGT K
Sbjct: 35 FRADQ-LVKWIYHFGEDNF----DNMTNLNKALREKLKTMAEIKAPEVAVEQRSADGTIK 89
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP RTT+CVSSQVGCA+ C FC T + G R+LT AEI+ Q
Sbjct: 90 WAMQVGDQQV-ETVYIP-EADRTTLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQV 147
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 148 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 207
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + ALA+SL+A DE+R+ I+P+N+KY + LI+++ L N+
Sbjct: 208 SGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANH 267
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 268 GKVTIEYVMLDHINDHVEHAHQLAAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQK 327
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 328 TLMEYGLTVIVRKTRGDDIDAACGQLA 354
>gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
Length = 373
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + S+DGT
Sbjct: 28 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSAAQHSADGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMRVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A DE+R+ IMPIN ++ + + T+R + N
Sbjct: 201 TSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|429087664|ref|ZP_19150396.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
gi|426507467|emb|CCK15508.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
Length = 388
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 206/353 (58%), Gaps = 16/353 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFK 166
K ++ L ++ ++++ ++ +P +A + K +Y DD DE+ +NK +
Sbjct: 18 KSEKINLLDLNRQAMREFFKTLGEKPFRADQVMKWMYHYCCDDF-----DEMTDINKVLR 72
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA
Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCA 130
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLT 190
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ I+
Sbjct: 191 NVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIV 250
Query: 343 PINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY + + +R L N +V EYVML VND + A +L L++ PCKI
Sbjct: 251 PINKKYNIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKI 310
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 311 NLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
Length = 398
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 206/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
S++ L ++ +++++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 SKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCFDDFEQMTDINKGLRTK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 85 LQRVAEIRAPEVAEEQRSTDGTIKWAIKVGDQQV-ETVYIP-EGDRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ ++ + ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+PI
Sbjct: 203 VPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDDIVPI 262
Query: 345 NRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + +R L N +V EYVML +NDS + A +L ++ PCKINL
Sbjct: 263 NRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLAACLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|421482988|ref|ZP_15930567.1| radical SAM superfamily protein 2 [Achromobacter piechaudii HLE]
gi|400198792|gb|EJO31749.1| radical SAM superfamily protein 2 [Achromobacter piechaudii HLE]
Length = 384
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/358 (38%), Positives = 197/358 (55%), Gaps = 21/358 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKML 169
R+ L G+ + L + V +P +A L W G D + TD L ++F+ L
Sbjct: 5 ERINLLGLDGSALSELVGQWGGKPFRARQLQRWMHQRGADSFDAMTD----LAREFRGQL 60
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ H AL + S+DGTRK LF + G IETV IP + R T+C+SSQ GC +NC
Sbjct: 61 ASHCRIEALPVNIEQRSTDGTRKWLFDVGQGNAIETVFIPED-DRGTLCISSQAGCVVNC 119
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------------ITNVVFMGMG 275
+FC TG G R+L +EI+ Q +A+R+L +++G+ I+NVV MGMG
Sbjct: 120 RFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESAKATEDTRVISNVVMMGMG 179
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + V+ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A D
Sbjct: 180 EPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPND 239
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++P+N+KY L L+ L F + FEY ML G+ND+ AK LI + +
Sbjct: 240 ALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQ 299
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ CK+NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 300 LRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLA 357
>gi|419614948|ref|ZP_14148715.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H56]
gi|380592118|gb|EIB13040.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H56]
Length = 356
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +++FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRIMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|421589586|ref|ZP_16034711.1| hypothetical protein RCCGEPOP_12158 [Rhizobium sp. Pop5]
gi|403705426|gb|EJZ21014.1| hypothetical protein RCCGEPOP_12158 [Rhizobium sp. Pop5]
Length = 409
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L GMS E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 26 LIGMSREEMGAALRDKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTN----VAKDMREML 81
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCISSQVG 140
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LIE + N ++ FEYVML VNDS +DAK LI
Sbjct: 261 HAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380
Query: 451 QL 452
QL
Sbjct: 381 QL 382
>gi|422909265|ref|ZP_16943914.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-09]
gi|424658618|ref|ZP_18095874.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-16]
gi|341635412|gb|EGS60128.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-09]
gi|408054526|gb|EKG89496.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-16]
Length = 373
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 195/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + S+DGT
Sbjct: 28 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMRVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A D++R+ IMPIN ++ + +E +R + N
Sbjct: 201 TSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIQAFLEVVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
Length = 384
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
Length = 373
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + S+DGT
Sbjct: 28 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSAAQHSADGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMRVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A DE+R+ IMPIN ++ + + T+R + N
Sbjct: 201 TSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRWNIQEFLATVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDGTEHAHELAELMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|205829928|sp|A1JKR9.1|RLMN_YERE8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 398
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 206/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
S++ L ++ +++++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 SKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCYDDFEQMTDINKGLRAK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 85 LQRVAEIRAPEVAEEQRSTDGTIKWAIKVGDQQV-ETVYIP-EGDRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ ++ + ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+PI
Sbjct: 203 VPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPI 262
Query: 345 NRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + +R L N +V EYVML +NDS + A +L ++ PCKINL
Sbjct: 263 NRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|424872756|ref|ZP_18296418.1| 23S rRNA m2A2503 methyltransferase [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393168457|gb|EJC68504.1| 23S rRNA m2A2503 methyltransferase [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 409
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 26 LIGLSREEMGAALREKGVAEKQIKMRVSQLWNWIYVRGVSDFDHMTN----VAKDMREML 81
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCISSQVG 140
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LIE R N ++ FEYVML VNDS +DAK LI
Sbjct: 261 HAVRDDLRDLLVPINKKYPLKELIEACRTYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380
Query: 451 QL 452
QL
Sbjct: 381 QL 382
>gi|315639331|ref|ZP_07894493.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
gi|315480657|gb|EFU71299.1| cfr family radical SAM enzyme [Campylobacter upsaliensis JV21]
Length = 356
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/334 (39%), Positives = 193/334 (57%), Gaps = 21/334 (6%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q + Y DD ++ L K+ ++ L+++ F L S DG+ K
Sbjct: 23 FRVKQICQWIYQKYADDF-----SKMSNLPKNLREELAKNYHFEPLKCVKEERSKDGSIK 77
Query: 193 ILFMLDDGLVIETVVIP------------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
LF L DGL IE+V++P + + T+CVSSQVGC C FC T + GLK
Sbjct: 78 YLFELKDGLRIESVLLPMKEEKFDGEGKRLSHAKFTICVSSQVGCRSGCSFCLTAKGGLK 137
Query: 241 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFS 300
R+L+A EIV Q ++ +R N+V+MGMGEPL N+ NV KA I+ H L S
Sbjct: 138 RNLSAGEIVGQILWIKRQNHIPYERRVNIVYMGMGEPLDNLNNVAKAVRILSHNDTLAIS 197
Query: 301 PRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358
R+ T+STSGL Q+K+ L E N LA+SL+A DE+R+ +MPIN+ Y + +++ +R
Sbjct: 198 VRRQTISTSGLAKQIKE-LGEMNLGVLLAISLHAVNDELRSKLMPINKAYNIASVMQAVR 256
Query: 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
E KV+FEY+++ G+ND + AK L+ L+ GI K+NLI FNPH GS + +
Sbjct: 257 E-FPIDMRKKVMFEYLLIDGINDKIEHAKELVKLLNGIKAKVNLILFNPHQGSIYKRPSL 315
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
E ++F+++L+ G T +R S+G D AACGQL
Sbjct: 316 ENAVKFQDLLSQKGVTCTIRESKGLDISAACGQL 349
>gi|427799644|ref|ZP_18967554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
gi|414064192|gb|EKT45183.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
Length = 388
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 209/357 (58%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLN 162
V+P K +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +N
Sbjct: 14 VVPNKETKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMY-----HYCCDNFDEMTDIN 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQ
Sbjct: 69 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQ 126
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGSITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + ITNVV MGMGEPL
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKVPGQRPITNVVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 187 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 247 DEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKET 306
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
coli str. K-12 substr. MG1655]
gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
Ss046]
gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
Sb227]
gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UTI89]
gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
gi|117624746|ref|YP_853659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O1]
gi|157157838|ref|YP_001463839.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E24377A]
gi|170019200|ref|YP_001724154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 8739]
gi|170082127|ref|YP_001731447.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
str. K-12 substr. DH10B]
gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SMS-3-5]
gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
CDC 3083-94]
gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SE11]
gi|215487867|ref|YP_002330298.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O127:H6 str. E2348/69]
gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI1]
gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
S88]
gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ED1a]
gi|218696144|ref|YP_002403811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
55989]
gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI39]
gi|222157223|ref|YP_002557362.1| hypothetical protein LF82_3091 [Escherichia coli LF82]
gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238901682|ref|YP_002927478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
BW2952]
gi|251785842|ref|YP_003000146.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
str. REL606]
gi|254289252|ref|YP_003055000.1| hypothetical protein ECD_02409 [Escherichia coli BL21(DE3)]
gi|260845147|ref|YP_003222925.1| enzyme [Escherichia coli O103:H2 str. 12009]
gi|260856611|ref|YP_003230502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. 11368]
gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|378712022|ref|YP_005276915.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|383179527|ref|YP_005457532.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
53G]
gi|386281584|ref|ZP_10059246.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386594714|ref|YP_006091114.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|386600495|ref|YP_006102001.1| 2-vinyl bacteriochlorophyllide hydratase [Escherichia coli IHE3034]
gi|386603443|ref|YP_006109743.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|386609919|ref|YP_006125405.1| radical SAM protein [Escherichia coli W]
gi|386615220|ref|YP_006134886.1| hypothetical protein UMNK88_3167 [Escherichia coli UMNK88]
gi|386620124|ref|YP_006139704.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|386625254|ref|YP_006144982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|386700537|ref|YP_006164374.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|386705782|ref|YP_006169629.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|386710407|ref|YP_006174128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|387608167|ref|YP_006097023.1| radical SAM superfamily protein [Escherichia coli 042]
gi|387613113|ref|YP_006116229.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|387617833|ref|YP_006120855.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|387622217|ref|YP_006129845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|387830414|ref|YP_003350351.1| hypothetical protein ECSF_2361 [Escherichia coli SE15]
gi|388478553|ref|YP_490745.1| hypothetical protein Y75_p2470 [Escherichia coli str. K-12 substr.
W3110]
gi|407470413|ref|YP_006783144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407480925|ref|YP_006778074.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410481491|ref|YP_006769037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|414577238|ref|ZP_11434417.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|415778573|ref|ZP_11489619.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|415784568|ref|ZP_11492389.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|415803712|ref|ZP_11500691.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|415815169|ref|ZP_11506689.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|415828718|ref|ZP_11515190.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|415840204|ref|ZP_11521693.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|415844083|ref|ZP_11523887.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|415862465|ref|ZP_11535931.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|415874042|ref|ZP_11541184.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|416268576|ref|ZP_11642205.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|416283497|ref|ZP_11646839.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|416299209|ref|ZP_11652290.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|416335671|ref|ZP_11672364.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|416344049|ref|ZP_11677949.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|416898710|ref|ZP_11928256.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|417085917|ref|ZP_11953227.1| methyltransferase [Escherichia coli cloneA_i1]
gi|417115193|ref|ZP_11966329.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|417135332|ref|ZP_11980117.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|417140771|ref|ZP_11983882.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|417146392|ref|ZP_11987350.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|417155465|ref|ZP_11993594.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|417163553|ref|ZP_11998741.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|417175320|ref|ZP_12005116.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|417185071|ref|ZP_12010567.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|417221985|ref|ZP_12025425.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|417231146|ref|ZP_12032544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|417237952|ref|ZP_12035683.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|417251892|ref|ZP_12043657.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|417261683|ref|ZP_12049171.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|417269007|ref|ZP_12056367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|417272691|ref|ZP_12060040.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|417278205|ref|ZP_12065521.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|417280820|ref|ZP_12068120.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|417286506|ref|ZP_12073795.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|417290622|ref|ZP_12077903.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|417299867|ref|ZP_12087094.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|417309002|ref|ZP_12095843.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|417582020|ref|ZP_12232822.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|417597826|ref|ZP_12248461.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|417603171|ref|ZP_12253741.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|417613983|ref|ZP_12264441.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|417619101|ref|ZP_12269515.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|417624472|ref|ZP_12274771.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|417629816|ref|ZP_12280053.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|417635489|ref|ZP_12285701.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|417640270|ref|ZP_12290411.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|417663074|ref|ZP_12312655.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|417667919|ref|ZP_12317464.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|417683190|ref|ZP_12332540.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|417756774|ref|ZP_12404848.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|417806068|ref|ZP_12453014.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|417833812|ref|ZP_12480259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|417863144|ref|ZP_12508192.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|417943679|ref|ZP_12586926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|417975814|ref|ZP_12616611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|418041587|ref|ZP_12679806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|418267013|ref|ZP_12886456.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|418303966|ref|ZP_12915760.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|418941814|ref|ZP_13495126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|418957110|ref|ZP_13509034.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|418997594|ref|ZP_13545188.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|419003071|ref|ZP_13550595.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|419008754|ref|ZP_13556185.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|419014428|ref|ZP_13561776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|419019446|ref|ZP_13566752.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|419024946|ref|ZP_13572172.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|419029983|ref|ZP_13577144.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|419035279|ref|ZP_13582365.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|419040669|ref|ZP_13587697.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|419143467|ref|ZP_13688205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|419149288|ref|ZP_13693941.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|419154916|ref|ZP_13699477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|419160204|ref|ZP_13704709.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|419165320|ref|ZP_13709776.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|419171186|ref|ZP_13715072.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|419176148|ref|ZP_13719964.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|419181817|ref|ZP_13725430.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|419187264|ref|ZP_13730778.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|419192563|ref|ZP_13736015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|419210746|ref|ZP_13753823.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|419216607|ref|ZP_13759606.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|419227872|ref|ZP_13770723.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|419233595|ref|ZP_13776370.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|419238885|ref|ZP_13781600.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|419244362|ref|ZP_13787000.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|419250173|ref|ZP_13792752.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|419255999|ref|ZP_13798512.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|419262309|ref|ZP_13804723.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|419268253|ref|ZP_13810605.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|419273750|ref|ZP_13816045.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|419279050|ref|ZP_13821296.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|419285217|ref|ZP_13827388.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|419290445|ref|ZP_13832537.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|419295839|ref|ZP_13837882.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|419301234|ref|ZP_13843233.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|419307362|ref|ZP_13849261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|419312372|ref|ZP_13854234.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|419317808|ref|ZP_13859610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|419323957|ref|ZP_13865650.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|419329946|ref|ZP_13871550.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|419335579|ref|ZP_13877104.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|419340956|ref|ZP_13882420.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|419346164|ref|ZP_13887538.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|419350624|ref|ZP_13891961.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|419356047|ref|ZP_13897304.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|419361141|ref|ZP_13902358.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|419366035|ref|ZP_13907196.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|419371001|ref|ZP_13912120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|419376450|ref|ZP_13917474.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|419381786|ref|ZP_13922736.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|419387130|ref|ZP_13928008.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|419392635|ref|ZP_13933442.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|419397620|ref|ZP_13938388.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|419402962|ref|ZP_13943686.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|419408081|ref|ZP_13948770.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|419413671|ref|ZP_13954323.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|419701361|ref|ZP_14228962.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|419803528|ref|ZP_14328698.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|419810226|ref|ZP_14335108.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|419865991|ref|ZP_14388362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|419872747|ref|ZP_14394772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|419878645|ref|ZP_14400109.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|419885683|ref|ZP_14406371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|419899550|ref|ZP_14419053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|419906599|ref|ZP_14425489.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|419914745|ref|ZP_14433133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|419920343|ref|ZP_14438461.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|419931193|ref|ZP_14448781.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|419939154|ref|ZP_14455955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|419947494|ref|ZP_14463840.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|419950859|ref|ZP_14467064.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|420105077|ref|ZP_14615658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|420111510|ref|ZP_14621341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|420113629|ref|ZP_14623350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|420119922|ref|ZP_14629165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|420124623|ref|ZP_14633470.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|420134514|ref|ZP_14642619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|420326674|ref|ZP_14828425.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|420337236|ref|ZP_14838802.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|420348433|ref|ZP_14849819.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|420353933|ref|ZP_14855033.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|420359717|ref|ZP_14860687.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|420363922|ref|ZP_14864805.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|420381539|ref|ZP_14880986.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|420386570|ref|ZP_14885919.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|420392263|ref|ZP_14891514.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|421683601|ref|ZP_16123394.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|421774685|ref|ZP_16211297.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|422333549|ref|ZP_16414559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|422351899|ref|ZP_16432704.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|422358132|ref|ZP_16438793.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|422367766|ref|ZP_16448192.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|422377482|ref|ZP_16457721.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|422380266|ref|ZP_16460445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|422752155|ref|ZP_16806059.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|422755899|ref|ZP_16809723.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|422761951|ref|ZP_16815708.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|422767166|ref|ZP_16820893.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|422771579|ref|ZP_16825268.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|422777776|ref|ZP_16831428.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|422780582|ref|ZP_16833367.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|422787134|ref|ZP_16839873.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|422792447|ref|ZP_16845147.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|422799830|ref|ZP_16848329.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|422819331|ref|ZP_16867542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|422830004|ref|ZP_16878166.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|422835597|ref|ZP_16883651.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|422837412|ref|ZP_16885385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|422972902|ref|ZP_16975514.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|422988643|ref|ZP_16979416.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|422995535|ref|ZP_16986299.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|423000680|ref|ZP_16991434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|423004352|ref|ZP_16995098.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|423010852|ref|ZP_17001586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|423020080|ref|ZP_17010789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|423025246|ref|ZP_17015943.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|423031066|ref|ZP_17021754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|423038892|ref|ZP_17029566.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044012|ref|ZP_17034679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045740|ref|ZP_17036400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054279|ref|ZP_17043086.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061254|ref|ZP_17050050.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423704104|ref|ZP_17678529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|423706637|ref|ZP_17681020.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|424754455|ref|ZP_18182369.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|424764628|ref|ZP_18192047.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|425115994|ref|ZP_18517793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|425120759|ref|ZP_18522455.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|425273667|ref|ZP_18665078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|425278918|ref|ZP_18670156.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|425284212|ref|ZP_18675250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|425289655|ref|ZP_18680495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|425301372|ref|ZP_18691263.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|425306247|ref|ZP_18695949.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|425380693|ref|ZP_18764710.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|425423361|ref|ZP_18804529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|427805698|ref|ZP_18972765.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|427810194|ref|ZP_18977259.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|429720107|ref|ZP_19255036.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772008|ref|ZP_19304029.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429776953|ref|ZP_19308929.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785680|ref|ZP_19317576.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429791570|ref|ZP_19323425.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429792418|ref|ZP_19324268.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429798994|ref|ZP_19330793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429807507|ref|ZP_19339232.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429812407|ref|ZP_19344091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429817928|ref|ZP_19349567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429823140|ref|ZP_19354735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429904515|ref|ZP_19370494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908653|ref|ZP_19374617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914524|ref|ZP_19380472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919554|ref|ZP_19385486.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925374|ref|ZP_19391288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929311|ref|ZP_19395213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935850|ref|ZP_19401736.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941530|ref|ZP_19407404.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944210|ref|ZP_19410073.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951769|ref|ZP_19417615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955118|ref|ZP_19420950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432358858|ref|ZP_19602078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|432363616|ref|ZP_19606780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|432370740|ref|ZP_19613825.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|432377727|ref|ZP_19620716.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|432382212|ref|ZP_19625155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|432388027|ref|ZP_19630914.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|432393029|ref|ZP_19635859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|432398473|ref|ZP_19641252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|432407598|ref|ZP_19650306.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|432417998|ref|ZP_19660596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|432422869|ref|ZP_19665413.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|432441983|ref|ZP_19684323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|432447089|ref|ZP_19689388.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|432450649|ref|ZP_19692911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|432466706|ref|ZP_19708793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|432471844|ref|ZP_19713888.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|432481867|ref|ZP_19723822.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|432486299|ref|ZP_19728214.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|432490285|ref|ZP_19732154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|432501009|ref|ZP_19742766.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|432514823|ref|ZP_19752045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|432527279|ref|ZP_19764371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|432544102|ref|ZP_19780944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|432549593|ref|ZP_19786359.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|432554564|ref|ZP_19791285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|432559732|ref|ZP_19796401.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|432564807|ref|ZP_19801387.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|432574617|ref|ZP_19811095.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|432576780|ref|ZP_19813237.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|432584732|ref|ZP_19821124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|432588799|ref|ZP_19825155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|432598523|ref|ZP_19834797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|432603148|ref|ZP_19839392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|432612382|ref|ZP_19848544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|432617659|ref|ZP_19853772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|432622748|ref|ZP_19858776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|432628141|ref|ZP_19864117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|432637759|ref|ZP_19873628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|432647045|ref|ZP_19882834.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|432656680|ref|ZP_19892383.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|432661728|ref|ZP_19897368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|432671622|ref|ZP_19907150.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|432675641|ref|ZP_19911097.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|432681127|ref|ZP_19916500.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|432686343|ref|ZP_19921638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|432692465|ref|ZP_19927692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|432695336|ref|ZP_19930534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|432699951|ref|ZP_19935104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|432705295|ref|ZP_19940394.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|432711537|ref|ZP_19946595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|432714257|ref|ZP_19949294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|432719665|ref|ZP_19954633.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|432723993|ref|ZP_19958910.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|432728574|ref|ZP_19963452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|432733259|ref|ZP_19968088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|432738008|ref|ZP_19972765.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|432742258|ref|ZP_19976977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|432746516|ref|ZP_19981181.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|432750966|ref|ZP_19985568.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|432755351|ref|ZP_19989899.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|432760341|ref|ZP_19994835.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|432765875|ref|ZP_20000313.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|432771469|ref|ZP_20005794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|432779421|ref|ZP_20013654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|432788423|ref|ZP_20022553.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|432793708|ref|ZP_20027792.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|432799667|ref|ZP_20033688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|432802712|ref|ZP_20036681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|432806697|ref|ZP_20040625.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|432810186|ref|ZP_20044079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|432816244|ref|ZP_20050027.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|432821869|ref|ZP_20055560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|432828007|ref|ZP_20061656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|432832574|ref|ZP_20066146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|432840309|ref|ZP_20073774.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|432852175|ref|ZP_20082217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|432869853|ref|ZP_20090446.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|432876262|ref|ZP_20094302.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|432895491|ref|ZP_20107211.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|432899594|ref|ZP_20110183.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|432905846|ref|ZP_20114646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|432920496|ref|ZP_20124131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|432928093|ref|ZP_20129346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|432935414|ref|ZP_20134768.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|432938859|ref|ZP_20137102.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|432948364|ref|ZP_20143520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|432956071|ref|ZP_20147890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|432962782|ref|ZP_20152314.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|432968596|ref|ZP_20157510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|432972676|ref|ZP_20161542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|432981896|ref|ZP_20170671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|432986233|ref|ZP_20174954.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|432991624|ref|ZP_20180288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|433005980|ref|ZP_20194408.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|433008576|ref|ZP_20196992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|433014799|ref|ZP_20203141.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|433024371|ref|ZP_20212352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|433029455|ref|ZP_20217311.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|433034343|ref|ZP_20222052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|433039522|ref|ZP_20227120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|433044069|ref|ZP_20231563.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|433048933|ref|ZP_20236280.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|433063957|ref|ZP_20250876.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|433073746|ref|ZP_20260397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|433078697|ref|ZP_20265225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|433083431|ref|ZP_20269887.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|433092891|ref|ZP_20279155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|433097338|ref|ZP_20283521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|433102057|ref|ZP_20288137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|433106782|ref|ZP_20292754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|433111758|ref|ZP_20297619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|433121076|ref|ZP_20306746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|433131059|ref|ZP_20316494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|433135727|ref|ZP_20321068.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|433145120|ref|ZP_20330261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|433154598|ref|ZP_20339536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|433164411|ref|ZP_20349146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|433169485|ref|ZP_20354110.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|433174419|ref|ZP_20358941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|433184221|ref|ZP_20368466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|433189257|ref|ZP_20373354.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|433194574|ref|ZP_20378560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|433199174|ref|ZP_20383071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|433204186|ref|ZP_20387953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|433322937|ref|ZP_20400326.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|442592524|ref|ZP_21010499.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442599048|ref|ZP_21016783.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443618572|ref|YP_007382428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|450191399|ref|ZP_21891208.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
gi|450219669|ref|ZP_21896211.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|450246570|ref|ZP_21901007.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|549552|sp|P36979.1|RLMN_ECOLI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123084401|sp|Q1R8L6.1|RLMN_ECOUT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123147826|sp|Q0TEW8.1|RLMN_ECOL5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123728531|sp|Q32D45.1|RLMN_SHIDS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123755559|sp|Q31XX3.1|RLMN_SHIBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123773477|sp|Q3YZ35.1|RLMN_SHISS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829749|sp|A7ZPW0.1|RLMN_ECO24 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829750|sp|B1XAZ2.1|RLMN_ECODH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829752|sp|A1AE55.1|RLMN_ECOK1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829753|sp|B1IWE4.1|RLMN_ECOLC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829754|sp|B1LNH2.1|RLMN_ECOSM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829888|sp|B2TXU2.1|RLMN_SHIB3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807172|sp|B7UGW3.1|RLMN_ECO27 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807173|sp|B7MI02.1|RLMN_ECO45 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807174|sp|B7LDA9.1|RLMN_ECO55 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807176|sp|B7NRG7.1|RLMN_ECO7I RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807177|sp|B7N304.1|RLMN_ECO81 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807178|sp|B7M7M1.1|RLMN_ECO8A RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807180|sp|B6I589.1|RLMN_ECOSE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|259491986|sp|C4ZX92.1|RLMN_ECOBW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
gi|1788865|gb|AAC75570.1| dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37
methyltransferase, SAM-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
[Escherichia coli 536]
gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|333970625|gb|AEG37430.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|338769630|gb|EGP24409.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|339416064|gb|AEJ57736.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|340733456|gb|EGR62587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|340739363|gb|EGR73598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|341916433|gb|EGT66050.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|342364541|gb|EGU28641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|342930490|gb|EGU99212.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|344194583|gb|EGV48656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|345337791|gb|EGW70223.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|345350837|gb|EGW83112.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|345352349|gb|EGW84598.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|345362177|gb|EGW94334.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|345372563|gb|EGX04527.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|345375815|gb|EGX07762.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|345377433|gb|EGX09365.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|345387029|gb|EGX16858.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|345393272|gb|EGX23050.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|349738991|gb|AEQ13697.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|354862370|gb|EHF22808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|354867654|gb|EHF28076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|354868755|gb|EHF29168.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|354873651|gb|EHF34028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|354880335|gb|EHF40671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|354889124|gb|EHF49377.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|354893354|gb|EHF53558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|354894305|gb|EHF54501.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354897097|gb|EHF57258.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|354898461|gb|EHF58615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354912229|gb|EHF72230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354915185|gb|EHF75165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354917419|gb|EHF77385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355350895|gb|EHG00090.1| methyltransferase [Escherichia coli cloneA_i1]
gi|359332826|dbj|BAL39273.1| predicted enzyme [Escherichia coli str. K-12 substr. MDS42]
gi|371597535|gb|EHN86356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|371607191|gb|EHN95769.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|371612209|gb|EHO00725.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|371615228|gb|EHO03656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|373245520|gb|EHP64988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|375322871|gb|EHS68604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|377843421|gb|EHU08461.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|377844272|gb|EHU09309.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|377846674|gb|EHU11681.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|377856396|gb|EHU21256.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|377859449|gb|EHU24280.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|377863730|gb|EHU28535.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|377873348|gb|EHU37985.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|377876983|gb|EHU41581.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|377879635|gb|EHU44207.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|377890709|gb|EHU55166.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|377992410|gb|EHV55557.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|377993980|gb|EHV57111.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|377995849|gb|EHV58960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|378007548|gb|EHV70517.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|378009772|gb|EHV72726.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|378015230|gb|EHV78127.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|378023450|gb|EHV86127.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|378029256|gb|EHV91872.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|378032120|gb|EHV94702.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|378037916|gb|EHW00438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|378053442|gb|EHW15742.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|378060798|gb|EHW22986.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|378073270|gb|EHW35323.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|378076654|gb|EHW38658.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|378083924|gb|EHW45855.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|378090298|gb|EHW52138.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|378094148|gb|EHW55950.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|378099465|gb|EHW61171.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|378104989|gb|EHW66637.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|378110904|gb|EHW72498.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|378116237|gb|EHW77770.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|378127751|gb|EHW89139.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|378130246|gb|EHW91616.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|378130561|gb|EHW91925.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|378140564|gb|EHX01787.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|378148345|gb|EHX09485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|378150850|gb|EHX11965.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|378158000|gb|EHX19031.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|378165033|gb|EHX25974.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|378168501|gb|EHX29405.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|378170262|gb|EHX31148.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|378181011|gb|EHX41688.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|378185612|gb|EHX46237.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|378187867|gb|EHX48478.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|378199885|gb|EHX60344.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|378200309|gb|EHX60765.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|378202788|gb|EHX63215.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|378212344|gb|EHX72667.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|378217595|gb|EHX77874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|378219173|gb|EHX79442.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|378227429|gb|EHX87601.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|378231657|gb|EHX91768.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|378236829|gb|EHX96868.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|378243741|gb|EHY03687.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|378247496|gb|EHY07415.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|378254460|gb|EHY14324.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|378259103|gb|EHY18919.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|380347562|gb|EIA35849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|383103950|gb|AFG41459.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|383392064|gb|AFH17022.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|383406099|gb|AFH12342.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|383475446|gb|EID67406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|384379757|gb|EIE37624.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|384473440|gb|EIE57481.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|385156948|gb|EIF18942.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|385537110|gb|EIF83993.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|385707220|gb|EIG44252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|385711602|gb|EIG48560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|386121723|gb|EIG70338.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386140612|gb|EIG81764.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|386153186|gb|EIH04475.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|386156104|gb|EIH12451.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|386163844|gb|EIH25639.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|386168554|gb|EIH35070.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|386172778|gb|EIH44792.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|386178012|gb|EIH55491.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|386183133|gb|EIH65884.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|386201787|gb|EII00778.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|386204145|gb|EII08656.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|386213730|gb|EII24155.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|386218741|gb|EII35224.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|386224810|gb|EII47145.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|386227812|gb|EII55168.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|386236391|gb|EII68367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|386239173|gb|EII76107.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|386245149|gb|EII86879.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|386249965|gb|EII96134.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|386252944|gb|EIJ02634.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|386256702|gb|EIJ12196.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|388333720|gb|EIL00337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|388334450|gb|EIL01041.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|388336172|gb|EIL02719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|388348459|gb|EIL14054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|388378693|gb|EIL41407.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|388379687|gb|EIL42334.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|388384875|gb|EIL46581.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|388385715|gb|EIL47386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|388398928|gb|EIL59739.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|388408645|gb|EIL68986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|388410502|gb|EIL70726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|388415965|gb|EIL75872.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|391250191|gb|EIQ09414.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|391260114|gb|EIQ19179.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|391268909|gb|EIQ27828.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|391277266|gb|EIQ36016.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|391281287|gb|EIQ39939.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|391283880|gb|EIQ42489.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|391293585|gb|EIQ51844.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|391299858|gb|EIQ57797.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|391304857|gb|EIQ62659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|391312030|gb|EIQ69653.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|394396699|gb|EJE73031.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|394398243|gb|EJE74431.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|394400229|gb|EJE76165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|394411219|gb|EJE85490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|394421284|gb|EJE94760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|394430590|gb|EJF02904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|397785065|gb|EJK95918.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|397899130|gb|EJL15506.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|404337957|gb|EJZ64405.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|406776653|gb|AFS56077.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407053222|gb|AFS73273.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407066448|gb|AFS87495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|408192944|gb|EKI18503.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|408200543|gb|EKI25720.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|408201389|gb|EKI26544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|408212764|gb|EKI37277.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|408213030|gb|EKI37534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|408227879|gb|EKI51448.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|408295564|gb|EKJ13869.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|408343253|gb|EKJ57657.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|408460433|gb|EKJ84212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|408567706|gb|EKK43760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|408568509|gb|EKK44540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|412963880|emb|CCK47806.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|412970373|emb|CCJ45019.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|421933102|gb|EKT90896.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|421937594|gb|EKT95203.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|429348258|gb|EKY85028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429359004|gb|EKY95670.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429361335|gb|EKY97990.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429361642|gb|EKY98295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429364282|gb|EKZ00902.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429375131|gb|EKZ11669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429376288|gb|EKZ12817.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429378597|gb|EKZ15105.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429379461|gb|EKZ15961.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429391164|gb|EKZ27569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429405528|gb|EKZ41794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429406064|gb|EKZ42325.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409969|gb|EKZ46194.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413881|gb|EKZ50061.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429420659|gb|EKZ56784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429428831|gb|EKZ64906.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429432384|gb|EKZ68424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429436590|gb|EKZ72606.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429438795|gb|EKZ74788.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429447164|gb|EKZ83088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429451417|gb|EKZ87308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429458075|gb|EKZ93913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430876278|gb|ELB99797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|430884544|gb|ELC07483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|430885821|gb|ELC08691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|430897747|gb|ELC19941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|430905530|gb|ELC27139.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|430907687|gb|ELC29185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|430914721|gb|ELC35816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|430918185|gb|ELC39224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|430929072|gb|ELC49593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|430938103|gb|ELC58346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|430943605|gb|ELC63712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|430966437|gb|ELC83845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|430973362|gb|ELC90330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|430979141|gb|ELC95927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|430992989|gb|ELD09348.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|430997586|gb|ELD13847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|431006389|gb|ELD21395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|431015508|gb|ELD29063.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|431019737|gb|ELD33131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|431028586|gb|ELD41630.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|431041209|gb|ELD51740.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|431063099|gb|ELD72356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|431073852|gb|ELD81490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|431079225|gb|ELD86195.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|431083229|gb|ELD89536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|431090952|gb|ELD96703.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|431092778|gb|ELD98459.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|431107064|gb|ELE11252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|431114454|gb|ELE17996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|431115486|gb|ELE18989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|431121132|gb|ELE24130.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|431130036|gb|ELE32145.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|431141722|gb|ELE43487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|431148556|gb|ELE49847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|431153647|gb|ELE54551.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|431158408|gb|ELE59007.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|431162752|gb|ELE63193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|431170499|gb|ELE70692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|431179700|gb|ELE79592.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|431190546|gb|ELE89945.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|431198687|gb|ELE97470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|431209904|gb|ELF07971.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|431213448|gb|ELF11322.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|431219857|gb|ELF17246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|431221063|gb|ELF18385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|431226395|gb|ELF23560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|431233424|gb|ELF29015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|431242177|gb|ELF36598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|431242927|gb|ELF37317.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|431248489|gb|ELF42683.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|431256107|gb|ELF49184.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|431261858|gb|ELF53881.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|431264585|gb|ELF56290.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|431273126|gb|ELF64224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|431274468|gb|ELF65525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|431281797|gb|ELF72696.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|431283949|gb|ELF74808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|431291054|gb|ELF81577.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|431295984|gb|ELF85714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|431301781|gb|ELF90982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|431307995|gb|ELF96285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|431310050|gb|ELF98243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|431313935|gb|ELG01890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|431326237|gb|ELG13599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|431336618|gb|ELG23726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|431339371|gb|ELG26433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|431342775|gb|ELG29746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|431347854|gb|ELG34731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|431354839|gb|ELG41565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|431362954|gb|ELG49532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|431363659|gb|ELG50212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|431367521|gb|ELG53998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|431371495|gb|ELG57204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|431374852|gb|ELG60197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|431388343|gb|ELG72079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|431399431|gb|ELG82838.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|431410439|gb|ELG93601.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|431419784|gb|ELH02124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|431421858|gb|ELH04070.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|431425723|gb|ELH07791.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|431431917|gb|ELH13691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|431441698|gb|ELH22806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|431443058|gb|ELH24136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|431452197|gb|ELH32646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|431458342|gb|ELH38679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|431462845|gb|ELH43052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|431466922|gb|ELH46938.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|431470012|gb|ELH49936.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|431472656|gb|ELH52543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|431480814|gb|ELH60530.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|431491205|gb|ELH70812.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|431495706|gb|ELH75292.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|431499127|gb|ELH78308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|431513678|gb|ELH91760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|431523191|gb|ELI00335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|431529785|gb|ELI06480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|431534432|gb|ELI10915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|431542507|gb|ELI17674.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|431549735|gb|ELI23811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|431550634|gb|ELI24623.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|431555375|gb|ELI29217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|431563710|gb|ELI36908.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|431580743|gb|ELI53300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|431587114|gb|ELI58495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|431595821|gb|ELI65808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|431601555|gb|ELI71071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|431609574|gb|ELI78891.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|431614919|gb|ELI84053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|431618336|gb|ELI87310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|431626490|gb|ELI95039.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|431627501|gb|ELI95903.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|431641776|gb|ELJ09510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|431645856|gb|ELJ13400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|431655655|gb|ELJ22686.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|431660749|gb|ELJ27612.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|431673120|gb|ELJ39350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|431686686|gb|ELJ52246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|431686833|gb|ELJ52389.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|431691631|gb|ELJ57089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|431705174|gb|ELJ69772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|431705318|gb|ELJ69915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|431715074|gb|ELJ79243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|431720133|gb|ELJ84167.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|431720559|gb|ELJ84586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|432348510|gb|ELL42960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|441607795|emb|CCP95946.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441652218|emb|CCQ02280.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443423080|gb|AGC87984.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|449316974|gb|EMD07070.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|449319217|gb|EMD09272.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|449319546|gb|EMD09595.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
Length = 384
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|90421563|ref|YP_529933.1| hypothetical protein RPC_0035 [Rhodopseudomonas palustris BisB18]
gi|122995691|sp|Q21DC2.1|RLMN_RHOPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|90103577|gb|ABD85614.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 399
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 203/359 (56%), Gaps = 21/359 (5%)
Query: 112 SRVLLKGMSFTELQQWVR----SHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
+R L G+S EL + + + + R +A LW +Y + E+ ++K+ +
Sbjct: 22 ARPSLIGLSRAELAEALGGIGVAASQRKMRAQQLWHWMYFRGVQEFA--EMTSISKEMRS 79
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLV------IETVVIPCNRGRTTVCVSS 221
L+EH + S+DGTRK L L G+ +E V IP R T+CVSS
Sbjct: 80 QLAEHFTVARPEVVAEQISNDGTRKWLLRLPSGVSGEKAHEVECVYIP-ETDRGTLCVSS 138
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------ITNVVFMG 273
QVGC +NC FC+TG L R+LTA EIV Q + AR L+ +TNVV MG
Sbjct: 139 QVGCTLNCSFCHTGTQKLVRNLTAGEIVGQVMVARDRLNDWADRETPNGNRLVTNVVMMG 198
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL+N + V A I+ +G+ S R+VT+STSG+VP + + E LA+SL+A
Sbjct: 199 MGEPLYNFDAVRDALLIVSDNEGIGISRRRVTLSTSGVVPNIVRAGEEIGVMLAISLHAV 258
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
DE+R+ ++P+NRKY L L++ R+ N ++ FEYVML VNDS DDAK L+ L+
Sbjct: 259 RDELRDELVPLNRKYPLAELLQACRDYPGASNARRITFEYVMLKDVNDSLDDAKLLVKLL 318
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
GIP KINLI FNP G+ + + +++ +F + AG + +R RG D +AACGQL
Sbjct: 319 SGIPAKINLIPFNPWPGTAYKCSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQL 377
>gi|420259500|ref|ZP_14762205.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica WA-314]
gi|404513031|gb|EKA26861.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica WA-314]
Length = 396
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 206/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
S++ L ++ +++++ +P +A + K +Y +C D+ E +NK +
Sbjct: 28 SKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCYDDFEQMTDINKGLRAK 82
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 83 LQRVAEIRAPEVAEEQRSTDGTIKWAIKVGDQQV-ETVYIP-EGDRATLCVSSQVGCALE 140
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ ++ + ITNVV MGMGEPL N+ NV
Sbjct: 141 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNV 200
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+PI
Sbjct: 201 VPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPI 260
Query: 345 NRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + +R L N +V EYVML +NDS + A +L ++ PCKINL
Sbjct: 261 NRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINL 320
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 321 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 371
>gi|429105680|ref|ZP_19167549.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|429111265|ref|ZP_19173035.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
gi|426292403|emb|CCJ93662.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|426312422|emb|CCJ99148.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
Length = 388
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 206/353 (58%), Gaps = 16/353 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFK 166
K ++ L ++ ++++ ++ +P +A + K +Y DD DE+ +NK +
Sbjct: 18 KSEKINLLDLNRQAMREFFKTLGEKPFRADQVMKWMYHYCCDDF-----DEMTDINKVLR 72
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA
Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCA 130
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLT 190
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ I+
Sbjct: 191 NVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIV 250
Query: 343 PINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY + + +R L N +V EYVML VND + A +L L++ PCKI
Sbjct: 251 PINKKYNIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKI 310
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 311 NLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|416115581|ref|ZP_11594112.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
concisus UNSWCD]
gi|384577747|gb|EIF07024.1| Ribosomal RNA large subunit methyltransferase N [Campylobacter
concisus UNSWCD]
Length = 381
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 204/348 (58%), Gaps = 22/348 (6%)
Query: 119 MSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRAL 178
+S EL++ V S +FR Q +++ +Y + A ++ L KD ++ L+E L
Sbjct: 7 LSIEELKELV-SPSFRATQ---IYEWVYKKN--ATEFSQMLNLPKDMRQDLAEKFYLDPL 60
Query: 179 SLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR------------GRTTVCVSSQVGCA 226
SSDG+ K LF L DGL IE+V++P R TVCVSSQVGC
Sbjct: 61 KCVKFEQSSDGSIKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTVCVSSQVGCK 120
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286
M C FC T + GL R+LTA EIV Q ++ +R + NVV+MGMGEPL N+ NV K
Sbjct: 121 MGCAFCLTAKGGLVRNLTAGEIVGQILWIKRENNIPYERRINVVYMGMGEPLDNLANVSK 180
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPI 344
A I+ +GL SPR+ TVSTSGL Q+K+ L E + LA+SL+A T+E+R+ +MPI
Sbjct: 181 AIKILALNEGLAISPRRQTVSTSGLGSQIKK-LGEMDLGVLLAISLHAVTNELRSRLMPI 239
Query: 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
N+ Y + +++ +R +V+FEY+++ +NDS DAK+L+ L+ GI K+NLI
Sbjct: 240 NKAYNIEAVMDAVRG-FPIDMRKRVMFEYLVIKDLNDSVSDAKKLVKLLHGIKAKVNLIY 298
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
FNP+ GS+F M++F+ L G T +R S+G D AACGQL
Sbjct: 299 FNPYEGSEFGRPELASMLKFQEYLRDHGVTCTIRQSKGLDISAACGQL 346
>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ATCC 35469]
gi|422806473|ref|ZP_16854905.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|424815430|ref|ZP_18240581.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
gi|254807182|sp|B7LKC1.1|RLMN_ESCF3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
Length = 384
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227080936|ref|YP_002809487.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
M66-2]
gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|384423989|ref|YP_005633347.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3984-4]
gi|417820180|ref|ZP_12466794.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE39]
gi|417823870|ref|ZP_12470461.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE48]
gi|419829369|ref|ZP_14352855.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-1A2]
gi|419832339|ref|ZP_14355801.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A2]
gi|419835669|ref|ZP_14359113.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46B1]
gi|421342513|ref|ZP_15792919.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43B1]
gi|421350580|ref|ZP_15800945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-25]
gi|421353555|ref|ZP_15803887.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-45]
gi|422306247|ref|ZP_16393429.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1035(8)]
gi|422916540|ref|ZP_16950876.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02A1]
gi|423734032|ref|ZP_17707246.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41B1]
gi|423818058|ref|ZP_17715479.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55C2]
gi|423850017|ref|ZP_17719268.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59A1]
gi|423879140|ref|ZP_17722873.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-60A1]
gi|423950223|ref|ZP_17733663.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-40]
gi|423977919|ref|ZP_17737211.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-46]
gi|423996962|ref|ZP_17740223.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02C1]
gi|424008316|ref|ZP_17751265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-44C1]
gi|424015666|ref|ZP_17755511.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55B2]
gi|424018605|ref|ZP_17758403.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59B1]
gi|424589995|ref|ZP_18029441.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1037(10)]
gi|424624146|ref|ZP_18062621.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A1]
gi|424628642|ref|ZP_18066945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-51A1]
gi|424632676|ref|ZP_18070790.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-52A1]
gi|424635765|ref|ZP_18073784.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55A1]
gi|424639680|ref|ZP_18077574.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A1]
gi|424647742|ref|ZP_18085416.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A1]
gi|429884994|ref|ZP_19366599.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
PS15]
gi|443526528|ref|ZP_21092607.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-78A1]
gi|254807221|sp|C3LT10.1|RLMN_VIBCM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3984-4]
gi|340037811|gb|EGQ98785.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE39]
gi|340047555|gb|EGR08478.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE48]
gi|341640017|gb|EGS64620.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02A1]
gi|395945264|gb|EJH55934.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43B1]
gi|395951025|gb|EJH61639.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-25]
gi|395952680|gb|EJH63293.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-45]
gi|408015207|gb|EKG52801.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A1]
gi|408020588|gb|EKG57884.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-52A1]
gi|408026436|gb|EKG63443.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A1]
gi|408026850|gb|EKG63844.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55A1]
gi|408035820|gb|EKG72275.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1037(10)]
gi|408036323|gb|EKG72761.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A1]
gi|408058508|gb|EKG93304.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-51A1]
gi|408620954|gb|EKK93957.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-1A2]
gi|408626931|gb|EKK99760.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1035(8)]
gi|408631478|gb|EKL04018.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41B1]
gi|408636371|gb|EKL08519.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55C2]
gi|408643360|gb|EKL15085.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-60A1]
gi|408644484|gb|EKL16168.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59A1]
gi|408650983|gb|EKL22239.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A2]
gi|408661139|gb|EKL32132.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-40]
gi|408665931|gb|EKL36737.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-46]
gi|408854015|gb|EKL93785.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02C1]
gi|408858423|gb|EKL98097.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46B1]
gi|408861652|gb|EKM01225.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55B2]
gi|408865756|gb|EKM05148.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-44C1]
gi|408869611|gb|EKM08905.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59B1]
gi|429228326|gb|EKY34254.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
PS15]
gi|443455091|gb|ELT18879.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-78A1]
Length = 373
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 195/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + S+DGT
Sbjct: 28 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMRVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A D++R+ IMPIN ++ + +E +R + N
Sbjct: 201 TSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
Length = 398
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/352 (38%), Positives = 206/352 (58%), Gaps = 20/352 (5%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE---GLNKDFKK 167
++ L ++ +++Q+ +P +A +M W I+ +C D+ E +NK +
Sbjct: 31 KINLLDLNRQQMRQFFAEMGEKPFRADQVMKW-------IYHYCFDDFEQMTDINKVLRA 83
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L AE RA + + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 84 KLQRVAEIRAPEVTEEQRSTDGTIKWAIKVGDQQV-ETVYIP-EGDRATLCVSSQVGCAL 141
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLHNVEN 283
C+FC T + G R+L +EI+ Q A +++ ++ + ITNVV MGMGEPL N+ N
Sbjct: 142 ECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNN 201
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+P
Sbjct: 202 VVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVP 261
Query: 344 INRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
INRKY + + +R L N +V EYVML +NDS + A +L ++ PCKIN
Sbjct: 262 INRKYNIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLAECLKDTPCKIN 321
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
LI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 322 LIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|386287223|ref|ZP_10064398.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
gi|385279755|gb|EIF43692.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
Length = 386
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 209/368 (56%), Gaps = 15/368 (4%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRP--GQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
RV L GMS ++ ++ S +P Q ++ W G D + DE+ L K + L
Sbjct: 17 RVNLLGMSRKNMEAYLSSIGEKPFRAQQILKWIHHSGIDNF----DEMTNLGKPLRAKLQ 72
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQ 230
E AE R ++ L S DGTRK + ++E V+IP + R T+CVSSQVGC+++C
Sbjct: 73 ELAEIRPPTVVKQLDSIDGTRKWAVEVGGNNLVEAVLIPDGQ-RGTLCVSSQVGCSLDCS 131
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARR----LLSSEVGSITNVVFMGMGEPLHNVENVIK 286
FC TG+ G R LTAAEI+ Q A + + +TNVV MGMGEPL N +NV++
Sbjct: 132 FCATGKQGFMRDLTAAEIIGQVWLAIKSYDGFNNGNKRIVTNVVMMGMGEPLLNFDNVVE 191
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
A ++M+ + G S R+VT+STSG+VP L + + S +LA+SL+A DE+R+ ++PIN+
Sbjct: 192 AMSLMLDDFGYGLSKRRVTLSTSGVVPMLDKLGDVSTVSLAISLHAPNDELRSQLVPINK 251
Query: 347 KYKLGLLIETLREELHFKNNYK--VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
KY + L+ + + +++ V EY ++AGVND + AK L +++ +PCK+NLI
Sbjct: 252 KYPIAELLAASKRYIAKQDDTHRVVTIEYTLIAGVNDGVEHAKELAEVLRDLPCKVNLIP 311
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLR 464
FNP S + ++ + F ++ AG +R RGDD AACGQL G +Q R
Sbjct: 312 FNPFSLSNYKRPSNNAVNRFWLVMTEAGYVTTVRTPRGDDIDAACGQLA--GQVQDRTKR 369
Query: 465 VPEKFQTA 472
Q A
Sbjct: 370 SERHRQKA 377
>gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 31758]
gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis YPIII]
gi|205829929|sp|A7FFY6.1|RLMN_YERP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829933|sp|B1JS02.1|RLMN_YERPY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis
IP 31758]
gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII]
Length = 398
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 205/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
S++ L ++ +++++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 SKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCYDDFEQMTDINKGLRAK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 85 LQRVAEIRAPEVAEEQRSVDGTIKWAIKVGDQQV-ETVYIP-EADRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ S G+ ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+PI
Sbjct: 203 VPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPI 262
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + +R L N +V EYVML +NDS + A +L ++ PCKINL
Sbjct: 263 NRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|340787103|ref|YP_004752568.1| ribosomal RNA large subunit methyltransferase N [Collimonas
fungivorans Ter331]
gi|340552370|gb|AEK61745.1| Ribosomal RNA large subunit methyltransferase N [Collimonas
fungivorans Ter331]
Length = 391
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 193/353 (54%), Gaps = 24/353 (6%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G AH D + L K + L+ A A ++ TS+DGTRK
Sbjct: 27 FRAKQ-LLRWIHQFG----AHDFDAMTDLAKSLRDKLATRAMIAAPAVISDHTSTDGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+S+Q GCA+NC+FC TG+ G R+LT EI+ Q
Sbjct: 82 WLLDVGQGNAVETVFIP-EENRGTLCISTQAGCAVNCRFCSTGKQGFSRNLTVGEIIGQL 140
Query: 253 VFARRLLSSEVG---------SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
A L G ITNVV MGMGEPL N E + A +M+ + S R+
Sbjct: 141 WMAEFELRKSKGIEPGHKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDDNAYGLSRRR 200
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VT+STSG+VP + + + A+AVSL+A+ D +R+ ++P+N+KY L L+ + L F
Sbjct: 201 VTLSTSGVVPMIDKLSQDCAVAMAVSLHASNDTLRDGLVPLNKKYPLRDLMAACKRYLEF 260
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG------IPCKINLISFNPHCGSQFTPTT 417
+ FEY ML GVND+ A+ LI LVQG +PCK NLI FNP S +
Sbjct: 261 APRDFITFEYCMLDGVNDTDAHARELIALVQGHAGGPAVPCKFNLIPFNPFPESGLKRSN 320
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
+ ++ F IL AG +R +RGDD AACGQL G +Q RV E+ Q
Sbjct: 321 NPRIKAFAQILMDAGIVTTVRKTRGDDIDAACGQLA--GEVQ-DRTRVQERMQ 370
>gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
KIM10+]
gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
biovar Microtus str. 91001]
gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 32953]
gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Antiqua]
gi|108811419|ref|YP_647186.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Nepal516]
gi|145599499|ref|YP_001163575.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Pestoides F]
gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162419386|ref|YP_001605027.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Angola]
gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
CO92]
gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516]
gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|384122853|ref|YP_005505473.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|384126880|ref|YP_005509494.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|384139297|ref|YP_005521999.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
A1122]
gi|384415515|ref|YP_005624877.1| hypothetical protein YPC_3072 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420547914|ref|ZP_15045762.1| 23S rRNA methyltransferase [Yersinia pestis PY-01]
gi|420553237|ref|ZP_15050524.1| 23S rRNA methyltransferase [Yersinia pestis PY-02]
gi|420558806|ref|ZP_15055391.1| 23S rRNA methyltransferase [Yersinia pestis PY-03]
gi|420564253|ref|ZP_15060246.1| 23S rRNA methyltransferase [Yersinia pestis PY-04]
gi|420569287|ref|ZP_15064821.1| 23S rRNA methyltransferase [Yersinia pestis PY-05]
gi|420574936|ref|ZP_15069927.1| 23S rRNA methyltransferase [Yersinia pestis PY-06]
gi|420580291|ref|ZP_15074796.1| 23S rRNA methyltransferase [Yersinia pestis PY-07]
gi|420585612|ref|ZP_15079619.1| 23S rRNA methyltransferase [Yersinia pestis PY-08]
gi|420590733|ref|ZP_15084225.1| 23S rRNA methyltransferase [Yersinia pestis PY-09]
gi|420596105|ref|ZP_15089057.1| 23S rRNA methyltransferase [Yersinia pestis PY-10]
gi|420601770|ref|ZP_15094102.1| 23S rRNA methyltransferase [Yersinia pestis PY-11]
gi|420607217|ref|ZP_15099016.1| 23S rRNA methyltransferase [Yersinia pestis PY-12]
gi|420612600|ref|ZP_15103850.1| 23S rRNA methyltransferase [Yersinia pestis PY-13]
gi|420617967|ref|ZP_15108548.1| 23S rRNA methyltransferase [Yersinia pestis PY-14]
gi|420623265|ref|ZP_15113298.1| 23S rRNA methyltransferase [Yersinia pestis PY-15]
gi|420628346|ref|ZP_15117912.1| 23S rRNA methyltransferase [Yersinia pestis PY-16]
gi|420633483|ref|ZP_15122520.1| 23S rRNA methyltransferase [Yersinia pestis PY-19]
gi|420638685|ref|ZP_15127200.1| 23S rRNA methyltransferase [Yersinia pestis PY-25]
gi|420644177|ref|ZP_15132199.1| 23S rRNA methyltransferase [Yersinia pestis PY-29]
gi|420649442|ref|ZP_15136966.1| 23S rRNA methyltransferase [Yersinia pestis PY-32]
gi|420655077|ref|ZP_15142034.1| 23S rRNA methyltransferase [Yersinia pestis PY-34]
gi|420660569|ref|ZP_15146959.1| 23S rRNA methyltransferase [Yersinia pestis PY-36]
gi|420665879|ref|ZP_15151725.1| 23S rRNA methyltransferase [Yersinia pestis PY-42]
gi|420670752|ref|ZP_15156157.1| 23S rRNA methyltransferase [Yersinia pestis PY-45]
gi|420676101|ref|ZP_15161024.1| 23S rRNA methyltransferase [Yersinia pestis PY-46]
gi|420681706|ref|ZP_15166097.1| 23S rRNA methyltransferase [Yersinia pestis PY-47]
gi|420687023|ref|ZP_15170828.1| 23S rRNA methyltransferase [Yersinia pestis PY-48]
gi|420692221|ref|ZP_15175395.1| 23S rRNA methyltransferase [Yersinia pestis PY-52]
gi|420698002|ref|ZP_15180481.1| 23S rRNA methyltransferase [Yersinia pestis PY-53]
gi|420703757|ref|ZP_15185109.1| 23S rRNA methyltransferase [Yersinia pestis PY-54]
gi|420709236|ref|ZP_15189894.1| 23S rRNA methyltransferase [Yersinia pestis PY-55]
gi|420714667|ref|ZP_15194738.1| 23S rRNA methyltransferase [Yersinia pestis PY-56]
gi|420720168|ref|ZP_15199473.1| 23S rRNA methyltransferase [Yersinia pestis PY-58]
gi|420725655|ref|ZP_15204280.1| 23S rRNA methyltransferase [Yersinia pestis PY-59]
gi|420731264|ref|ZP_15209311.1| 23S rRNA methyltransferase [Yersinia pestis PY-60]
gi|420736304|ref|ZP_15213867.1| 23S rRNA methyltransferase [Yersinia pestis PY-61]
gi|420741747|ref|ZP_15218758.1| 23S rRNA methyltransferase [Yersinia pestis PY-63]
gi|420747419|ref|ZP_15223580.1| 23S rRNA methyltransferase [Yersinia pestis PY-64]
gi|420752907|ref|ZP_15228446.1| 23S rRNA methyltransferase [Yersinia pestis PY-65]
gi|420758597|ref|ZP_15233083.1| 23S rRNA methyltransferase [Yersinia pestis PY-66]
gi|420763949|ref|ZP_15237719.1| 23S rRNA methyltransferase [Yersinia pestis PY-71]
gi|420769173|ref|ZP_15242409.1| 23S rRNA methyltransferase [Yersinia pestis PY-72]
gi|420774163|ref|ZP_15246920.1| 23S rRNA methyltransferase [Yersinia pestis PY-76]
gi|420779767|ref|ZP_15251864.1| 23S rRNA methyltransferase [Yersinia pestis PY-88]
gi|420785349|ref|ZP_15256750.1| 23S rRNA methyltransferase [Yersinia pestis PY-89]
gi|420790521|ref|ZP_15261384.1| 23S rRNA methyltransferase [Yersinia pestis PY-90]
gi|420796038|ref|ZP_15266344.1| 23S rRNA methyltransferase [Yersinia pestis PY-91]
gi|420801097|ref|ZP_15270886.1| 23S rRNA methyltransferase [Yersinia pestis PY-92]
gi|420806465|ref|ZP_15275744.1| 23S rRNA methyltransferase [Yersinia pestis PY-93]
gi|420811813|ref|ZP_15280556.1| 23S rRNA methyltransferase [Yersinia pestis PY-94]
gi|420817334|ref|ZP_15285534.1| 23S rRNA methyltransferase [Yersinia pestis PY-95]
gi|420822646|ref|ZP_15290305.1| 23S rRNA methyltransferase [Yersinia pestis PY-96]
gi|420827729|ref|ZP_15294870.1| 23S rRNA methyltransferase [Yersinia pestis PY-98]
gi|420833420|ref|ZP_15300014.1| 23S rRNA methyltransferase [Yersinia pestis PY-99]
gi|420838284|ref|ZP_15304412.1| 23S rRNA methyltransferase [Yersinia pestis PY-100]
gi|420843472|ref|ZP_15309113.1| 23S rRNA methyltransferase [Yersinia pestis PY-101]
gi|420849131|ref|ZP_15314201.1| 23S rRNA methyltransferase [Yersinia pestis PY-102]
gi|420854747|ref|ZP_15318988.1| 23S rRNA methyltransferase [Yersinia pestis PY-103]
gi|420859989|ref|ZP_15323577.1| 23S rRNA methyltransferase [Yersinia pestis PY-113]
gi|421764386|ref|ZP_16201178.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
INS]
gi|81638860|sp|Q667Z6.1|RLMN_YERPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123372276|sp|Q1C5I5.1|RLMN_YERPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123373337|sp|Q1CK94.1|RLMN_YERPN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123776892|sp|Q7CJM9.1|RLMN_YERPE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829931|sp|A9R805.1|RLMN_YERPG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829932|sp|A4TMU0.1|RLMN_YERPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM10+]
gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar
Microtus str. 91001]
gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua]
gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola]
gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516]
gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342854426|gb|AEL72979.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
A1122]
gi|391424135|gb|EIQ86552.1| 23S rRNA methyltransferase [Yersinia pestis PY-01]
gi|391425019|gb|EIQ87338.1| 23S rRNA methyltransferase [Yersinia pestis PY-02]
gi|391425512|gb|EIQ87769.1| 23S rRNA methyltransferase [Yersinia pestis PY-03]
gi|391439181|gb|EIQ99861.1| 23S rRNA methyltransferase [Yersinia pestis PY-04]
gi|391440427|gb|EIR01001.1| 23S rRNA methyltransferase [Yersinia pestis PY-05]
gi|391443996|gb|EIR04261.1| 23S rRNA methyltransferase [Yersinia pestis PY-06]
gi|391455997|gb|EIR15063.1| 23S rRNA methyltransferase [Yersinia pestis PY-07]
gi|391456947|gb|EIR15927.1| 23S rRNA methyltransferase [Yersinia pestis PY-08]
gi|391459108|gb|EIR17914.1| 23S rRNA methyltransferase [Yersinia pestis PY-09]
gi|391472073|gb|EIR29570.1| 23S rRNA methyltransferase [Yersinia pestis PY-10]
gi|391473762|gb|EIR31109.1| 23S rRNA methyltransferase [Yersinia pestis PY-11]
gi|391474233|gb|EIR31538.1| 23S rRNA methyltransferase [Yersinia pestis PY-12]
gi|391488248|gb|EIR44114.1| 23S rRNA methyltransferase [Yersinia pestis PY-13]
gi|391489579|gb|EIR45312.1| 23S rRNA methyltransferase [Yersinia pestis PY-15]
gi|391490920|gb|EIR46527.1| 23S rRNA methyltransferase [Yersinia pestis PY-14]
gi|391504024|gb|EIR58157.1| 23S rRNA methyltransferase [Yersinia pestis PY-16]
gi|391504342|gb|EIR58442.1| 23S rRNA methyltransferase [Yersinia pestis PY-19]
gi|391509292|gb|EIR62932.1| 23S rRNA methyltransferase [Yersinia pestis PY-25]
gi|391519882|gb|EIR72482.1| 23S rRNA methyltransferase [Yersinia pestis PY-29]
gi|391521885|gb|EIR74316.1| 23S rRNA methyltransferase [Yersinia pestis PY-34]
gi|391522799|gb|EIR75160.1| 23S rRNA methyltransferase [Yersinia pestis PY-32]
gi|391534858|gb|EIR85994.1| 23S rRNA methyltransferase [Yersinia pestis PY-36]
gi|391537633|gb|EIR88510.1| 23S rRNA methyltransferase [Yersinia pestis PY-42]
gi|391539882|gb|EIR90569.1| 23S rRNA methyltransferase [Yersinia pestis PY-45]
gi|391552888|gb|EIS02273.1| 23S rRNA methyltransferase [Yersinia pestis PY-46]
gi|391553340|gb|EIS02672.1| 23S rRNA methyltransferase [Yersinia pestis PY-47]
gi|391554150|gb|EIS03421.1| 23S rRNA methyltransferase [Yersinia pestis PY-48]
gi|391568010|gb|EIS15796.1| 23S rRNA methyltransferase [Yersinia pestis PY-52]
gi|391569159|gb|EIS16786.1| 23S rRNA methyltransferase [Yersinia pestis PY-53]
gi|391574500|gb|EIS21377.1| 23S rRNA methyltransferase [Yersinia pestis PY-54]
gi|391582045|gb|EIS27857.1| 23S rRNA methyltransferase [Yersinia pestis PY-55]
gi|391584662|gb|EIS30162.1| 23S rRNA methyltransferase [Yersinia pestis PY-56]
gi|391595172|gb|EIS39246.1| 23S rRNA methyltransferase [Yersinia pestis PY-58]
gi|391597920|gb|EIS41696.1| 23S rRNA methyltransferase [Yersinia pestis PY-60]
gi|391599297|gb|EIS42930.1| 23S rRNA methyltransferase [Yersinia pestis PY-59]
gi|391612272|gb|EIS54362.1| 23S rRNA methyltransferase [Yersinia pestis PY-61]
gi|391612918|gb|EIS54939.1| 23S rRNA methyltransferase [Yersinia pestis PY-63]
gi|391616598|gb|EIS58240.1| 23S rRNA methyltransferase [Yersinia pestis PY-64]
gi|391625264|gb|EIS65791.1| 23S rRNA methyltransferase [Yersinia pestis PY-65]
gi|391631126|gb|EIS70793.1| 23S rRNA methyltransferase [Yersinia pestis PY-66]
gi|391636046|gb|EIS75126.1| 23S rRNA methyltransferase [Yersinia pestis PY-71]
gi|391638261|gb|EIS77086.1| 23S rRNA methyltransferase [Yersinia pestis PY-72]
gi|391648033|gb|EIS85598.1| 23S rRNA methyltransferase [Yersinia pestis PY-76]
gi|391651846|gb|EIS88973.1| 23S rRNA methyltransferase [Yersinia pestis PY-88]
gi|391656655|gb|EIS93258.1| 23S rRNA methyltransferase [Yersinia pestis PY-89]
gi|391661089|gb|EIS97170.1| 23S rRNA methyltransferase [Yersinia pestis PY-90]
gi|391668940|gb|EIT04128.1| 23S rRNA methyltransferase [Yersinia pestis PY-91]
gi|391678150|gb|EIT12394.1| 23S rRNA methyltransferase [Yersinia pestis PY-93]
gi|391679120|gb|EIT13281.1| 23S rRNA methyltransferase [Yersinia pestis PY-92]
gi|391679830|gb|EIT13928.1| 23S rRNA methyltransferase [Yersinia pestis PY-94]
gi|391692086|gb|EIT24956.1| 23S rRNA methyltransferase [Yersinia pestis PY-95]
gi|391694975|gb|EIT27589.1| 23S rRNA methyltransferase [Yersinia pestis PY-96]
gi|391696750|gb|EIT29203.1| 23S rRNA methyltransferase [Yersinia pestis PY-98]
gi|391708412|gb|EIT39673.1| 23S rRNA methyltransferase [Yersinia pestis PY-99]
gi|391712580|gb|EIT43445.1| 23S rRNA methyltransferase [Yersinia pestis PY-100]
gi|391713119|gb|EIT43927.1| 23S rRNA methyltransferase [Yersinia pestis PY-101]
gi|391724780|gb|EIT54318.1| 23S rRNA methyltransferase [Yersinia pestis PY-102]
gi|391726169|gb|EIT55553.1| 23S rRNA methyltransferase [Yersinia pestis PY-103]
gi|391728624|gb|EIT57712.1| 23S rRNA methyltransferase [Yersinia pestis PY-113]
gi|411175700|gb|EKS45726.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
INS]
Length = 398
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 205/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
S++ L ++ +++++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 SKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCYDDFEQMTDINKGLRAK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 85 LQRVAEIRAPEVAEEQRSVDGTIKWAIKVGDQQV-ETVYIP-EADRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ S G+ ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+PI
Sbjct: 203 VPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPI 262
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + +R L N +V EYVML +NDS + A +L ++ PCKINL
Sbjct: 263 NRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|399018040|ref|ZP_10720226.1| 23S rRNA methyltransferase [Herbaspirillum sp. CF444]
gi|398102005|gb|EJL92197.1| 23S rRNA methyltransferase [Herbaspirillum sp. CF444]
Length = 393
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 196/354 (55%), Gaps = 25/354 (7%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W YG +A TD L K ++ LS A A ++ TS+DGTRK
Sbjct: 28 FRAKQ-LQRWIHQYGVADFAEMTD----LAKSLREKLSTRAFVAAPAIISDHTSTDGTRK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + +G +ETV IP R T+C+S+Q GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 83 WLVDVGNGNAVETVFIP-EETRGTLCISTQAGCAVNCRFCSTGKQGFNRNLSVGEIIGQL 141
Query: 253 VFA----RRLLSSEVG-----SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
A R+ E G ITNVV MGMGEPL N E + A +M+ + S R+
Sbjct: 142 WMAEFELRKTKGIEAGPKGERQITNVVMMGMGEPLLNFEPTVTALKLMLDDNAYGLSRRR 201
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VT+STSG+VP + + E ALAVSL+A+ D +R+ ++P+N+KY L L+ + L F
Sbjct: 202 VTLSTSGVVPMIDKLSQECPVALAVSLHASNDTLRDGLIPLNKKYPLQELMAACKRYLEF 261
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG-------IPCKINLISFNPHCGSQFTPT 416
V FEY ML GVNDS A+ L+ LVQG +PCK NLI FNP S +
Sbjct: 262 APRDFVTFEYCMLDGVNDSDAHARELVALVQGGGDGKAAVPCKFNLIPFNPFPESGLKRS 321
Query: 417 TDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
+ ++ F IL AG +R +RGDD AACGQL G ++ RV E+ Q
Sbjct: 322 HNPRIKAFAQILMDAGLVTTIRKTRGDDIDAACGQLA--GEVK-DRTRVQERMQ 372
>gi|15640776|ref|NP_230406.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|360034664|ref|YP_004936427.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. 2010EL-1786]
gi|379740604|ref|YP_005332573.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
IEC224]
gi|417812800|ref|ZP_12459457.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-49A2]
gi|417815665|ref|ZP_12462297.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HCUF01]
gi|418331799|ref|ZP_12942739.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-06A1]
gi|418336563|ref|ZP_12945461.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-23A1]
gi|418343056|ref|ZP_12949850.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-28A1]
gi|418348225|ref|ZP_12952959.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43A1]
gi|418354747|ref|ZP_12957468.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A1]
gi|419825217|ref|ZP_14348722.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1033(6)]
gi|421316095|ref|ZP_15766666.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1032(5)]
gi|421320395|ref|ZP_15770952.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1038(11)]
gi|421324391|ref|ZP_15774917.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1041(14)]
gi|421328052|ref|ZP_15778566.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1042(15)]
gi|421331070|ref|ZP_15781550.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1046(19)]
gi|421334645|ref|ZP_15785112.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1048(21)]
gi|421338538|ref|ZP_15788973.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-20A2]
gi|421346881|ref|ZP_15797263.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46A1]
gi|422890860|ref|ZP_16933268.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-40A1]
gi|422901735|ref|ZP_16937095.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48A1]
gi|422905960|ref|ZP_16940802.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-70A1]
gi|422912555|ref|ZP_16947078.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HFU-02]
gi|422921978|ref|ZP_16955180.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
BJG-01]
gi|422925036|ref|ZP_16958065.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-38A1]
gi|423144356|ref|ZP_17131969.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-19A1]
gi|423149008|ref|ZP_17136366.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-21A1]
gi|423152853|ref|ZP_17140050.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-22A1]
gi|423155662|ref|ZP_17142770.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-32A1]
gi|423159493|ref|ZP_17146464.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-33A2]
gi|423164180|ref|ZP_17150965.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48B2]
gi|423730312|ref|ZP_17703629.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A1]
gi|423749156|ref|ZP_17711643.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A2]
gi|423892030|ref|ZP_17725716.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62A1]
gi|423926805|ref|ZP_17730332.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-77A1]
gi|424001360|ref|ZP_17744448.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A2]
gi|424005516|ref|ZP_17748499.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-37A1]
gi|424023527|ref|ZP_17763190.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62B1]
gi|424026330|ref|ZP_17765945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-69A1]
gi|424585655|ref|ZP_18025248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1030(3)]
gi|424594351|ref|ZP_18033688.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1040(13)]
gi|424598216|ref|ZP_18037413.1| ribosomal RNA large subunit methyltransferase N [Vibrio Cholerae
CP1044(17)]
gi|424600969|ref|ZP_18040125.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1047(20)]
gi|424605949|ref|ZP_18044913.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1050(23)]
gi|424609782|ref|ZP_18048639.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-39A1]
gi|424612585|ref|ZP_18051391.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41A1]
gi|424616406|ref|ZP_18055096.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-42A1]
gi|424621344|ref|ZP_18059871.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-47A1]
gi|424644321|ref|ZP_18082074.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A2]
gi|424651965|ref|ZP_18089486.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A2]
gi|424655912|ref|ZP_18093213.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A2]
gi|440709044|ref|ZP_20889702.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
4260B]
gi|443502858|ref|ZP_21069846.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-64A1]
gi|443506771|ref|ZP_21073560.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-65A1]
gi|443510878|ref|ZP_21077541.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-67A1]
gi|443514440|ref|ZP_21080978.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-68A1]
gi|443518253|ref|ZP_21084669.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-71A1]
gi|443523120|ref|ZP_21089359.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-72A2]
gi|443530752|ref|ZP_21096767.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-7A1]
gi|443534509|ref|ZP_21100420.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-80A1]
gi|443538101|ref|ZP_21103956.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A1]
gi|449056719|ref|ZP_21735387.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. Inaba G4222]
gi|81623203|sp|Q9KTX3.1|RLMN_VIBCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|340041391|gb|EGR02357.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HCUF01]
gi|340042104|gb|EGR03069.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-49A2]
gi|341624720|gb|EGS50204.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-70A1]
gi|341625937|gb|EGS51358.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48A1]
gi|341626532|gb|EGS51905.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-40A1]
gi|341640341|gb|EGS64931.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HFU-02]
gi|341647343|gb|EGS71426.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
BJG-01]
gi|341648033|gb|EGS72100.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-38A1]
gi|356419961|gb|EHH73491.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-06A1]
gi|356420909|gb|EHH74417.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-21A1]
gi|356425758|gb|EHH79104.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-19A1]
gi|356432141|gb|EHH85338.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-23A1]
gi|356433744|gb|EHH86929.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-22A1]
gi|356437494|gb|EHH90583.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-28A1]
gi|356442563|gb|EHH95402.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-32A1]
gi|356446964|gb|EHH99754.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43A1]
gi|356449792|gb|EHI02530.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-33A2]
gi|356453149|gb|EHI05812.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A1]
gi|356456125|gb|EHI08736.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48B2]
gi|356645818|gb|AET25873.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. 2010EL-1786]
gi|378794114|gb|AFC57585.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
IEC224]
gi|395920061|gb|EJH30883.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1041(14)]
gi|395921052|gb|EJH31872.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1032(5)]
gi|395923377|gb|EJH34188.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1038(11)]
gi|395929558|gb|EJH40307.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1042(15)]
gi|395932334|gb|EJH43077.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1046(19)]
gi|395936506|gb|EJH47229.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1048(21)]
gi|395943486|gb|EJH54160.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-20A2]
gi|395945941|gb|EJH56605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46A1]
gi|395961834|gb|EJH72144.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A2]
gi|395963271|gb|EJH73543.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A2]
gi|395965953|gb|EJH76089.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-42A1]
gi|395974209|gb|EJH83742.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-47A1]
gi|395977203|gb|EJH86622.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1030(3)]
gi|395978636|gb|EJH88011.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1047(20)]
gi|408009242|gb|EKG47157.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-39A1]
gi|408016022|gb|EKG53583.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41A1]
gi|408036554|gb|EKG72979.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1040(13)]
gi|408044443|gb|EKG80361.1| ribosomal RNA large subunit methyltransferase N [Vibrio Cholerae
CP1044(17)]
gi|408046037|gb|EKG81758.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1050(23)]
gi|408056511|gb|EKG91389.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A2]
gi|408610754|gb|EKK84119.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1033(6)]
gi|408626825|gb|EKK99659.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A1]
gi|408639974|gb|EKL11776.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A2]
gi|408657806|gb|EKL28882.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-77A1]
gi|408658862|gb|EKL29920.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62A1]
gi|408847951|gb|EKL88007.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-37A1]
gi|408848879|gb|EKL88915.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A2]
gi|408872904|gb|EKM12112.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62B1]
gi|408880917|gb|EKM19832.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-69A1]
gi|439975344|gb|ELP51467.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
4260B]
gi|443432755|gb|ELS75277.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-64A1]
gi|443436580|gb|ELS82698.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-65A1]
gi|443440142|gb|ELS89832.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-67A1]
gi|443444236|gb|ELS97511.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-68A1]
gi|443448074|gb|ELT04710.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-71A1]
gi|443450848|gb|ELT11113.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-72A2]
gi|443457835|gb|ELT25231.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-7A1]
gi|443462293|gb|ELT33333.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-80A1]
gi|443465690|gb|ELT40349.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A1]
gi|448263887|gb|EMB01127.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. Inaba G4222]
Length = 373
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 195/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + S+DGT
Sbjct: 28 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMRVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A D++R+ IMPIN ++ + +E +R + N
Sbjct: 201 TSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|419567654|ref|ZP_14104809.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1417]
gi|380547798|gb|EIA71714.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
1417]
Length = 356
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
+ E N LA+SL+A DE+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 MGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|300691809|ref|YP_003752804.1| hypothetical protein RPSI07_2165 [Ralstonia solanacearum PSI07]
gi|299078869|emb|CBJ51530.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum PSI07]
gi|344166998|emb|CCA79189.1| conserved hypothetical protein, predicted radical SAM enzyme [blood
disease bacterium R229]
Length = 383
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 187/329 (56%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGAADFGEMTD----LAKSLREKLATRATIQAPAVISDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 81 KWLVDVGAGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAVRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVNDS + A+ L+ ++ +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDSVEHARELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|283953675|ref|ZP_06371206.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni 414]
gi|283794716|gb|EFC33454.1| putative radical SAM domain protein [Campylobacter jejuni subsp.
jejuni 414]
Length = 356
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 190/316 (60%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L+++ F + S D + K LF L DGL +E+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQNFHFSPVKCVKNEQSKDRSIKYLFELIDGLRVESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC +C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEKIDEKGKRISHARYTICVSSQVGCKSSCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L + N LA+SL+A DE+R +MPIN+ Y + +++ +R E +V+FEY+++
Sbjct: 215 LGQMNLGILLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-EFPIVQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYKRPSLENAIKFQDLLSSKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|296446886|ref|ZP_06888822.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b]
gi|296255561|gb|EFH02652.1| radical SAM enzyme, Cfr family [Methylosinus trichosporium OB3b]
Length = 386
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 183/305 (60%), Gaps = 26/305 (8%)
Query: 173 AEFRALSLKDILT---SSDGTRKILFMLD------DGLVIETVVIPCNRGRTTVCVSSQV 223
AE L+L +++ S+DGTRK L LD G IE V IP R T+CVSSQV
Sbjct: 67 AERFGLALPEVVAEQVSTDGTRKWLLRLDPVDAADKGAEIECVYIP-ESDRGTLCVSSQV 125
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----------------EVGSIT 267
GC +NC FC+TG L R+L+ EI+ Q + AR L +V +++
Sbjct: 126 GCTLNCSFCHTGTQKLVRNLSTREIIAQLLVARMRLGDFPGLEPPTDGLVPSGPDVRAVS 185
Query: 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALA 327
N+VFMGMGEPL+N+E V A I+ GL S R++TVSTSG+VPQ+++ E LA
Sbjct: 186 NIVFMGMGEPLYNLEQVENAIEILSDGDGLSLSKRRITVSTSGVVPQIERLGAECGPMLA 245
Query: 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387
+SL+A DE+RN ++P+N+KY + L++ R+ N ++ FEYVML GVNDS +A+
Sbjct: 246 ISLHAVRDELRNELVPLNKKYPIRQLLDACRDYPGASNARRITFEYVMLKGVNDSPAEAR 305
Query: 388 RLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447
L+ L++GIP KINLI FNP G+ + + E + F +I+ AG +R RG D +A
Sbjct: 306 ELVRLLKGIPAKINLIPFNPWPGAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILA 365
Query: 448 ACGQL 452
ACGQL
Sbjct: 366 ACGQL 370
>gi|290476003|ref|YP_003468899.1| pyruvate formate lyase activating enzyme 2 [Xenorhabdus bovienii
SS-2004]
gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
bovienii SS-2004]
Length = 392
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 210/360 (58%), Gaps = 17/360 (4%)
Query: 104 INVLP-KKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE--- 159
++V P KK ++ L ++ +++Q+ +P +A + K +Y +C D+ E
Sbjct: 15 VSVTPEKKNGKINLLDLNRKQMRQFFIDMGEKPFRADQVMKWMY-----HYCYDDFEQMT 69
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
+NK + L + AE +A + + S+DGT K + D V ETV IP + R T+CV
Sbjct: 70 DINKVLRMKLQQVAEIKAPEVAEEQRSADGTIKWAITVGDQQV-ETVYIPEDE-RATLCV 127
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMG 275
SSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MGMG
Sbjct: 128 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMGMG 187
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD
Sbjct: 188 EPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMVDVALAISLHAPTD 247
Query: 336 EVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
+VR+ I+PINRKY + + +R L N +V EYVML VNDS + A +L +
Sbjct: 248 DVRDEIVPINRKYNIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSVEQAHQLAECL 307
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ P KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 KDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 367
>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
gi|122941195|sp|Q0A989.1|RLMN_ALHEH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 180/307 (58%), Gaps = 6/307 (1%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H +E+ ++K + L+E R + S DGTRK L +D G IET
Sbjct: 31 WVHQRRVTGFEEMTDISKALRARLAERVALRLPEVLAEQVSEDGTRKWLLRVDGGQAIET 90
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS 265
V IP + GR T+CVSSQVGCA++C FC T + G R+L+ AEI+ Q A L+
Sbjct: 91 VFIP-DSGRGTLCVSSQVGCALDCSFCSTAQQGFNRNLSTAEIIGQYYVAYDQLTGTGEQ 149
Query: 266 ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCA 325
ITNVVFMGMGEPL N+E VI A +M + S RKVT+STSG+V L++ +++ +
Sbjct: 150 ITNVVFMGMGEPLLNLEAVIPAVRLMTDDDAYGLSKRKVTISTSGVVTMLERMREQTDVS 209
Query: 326 LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDD 385
LAVSL+A + +R+ ++PINRK+ L LI + K + ++ +EYVML GVND
Sbjct: 210 LAVSLHAPNNALRDELVPINRKHPLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHH 269
Query: 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQ 445
A L L+ IP K+NLI FNP G+++ + +++ F IL G T R++RG D
Sbjct: 270 AHELARLLGDIPSKVNLIPFNPFPGARYRCSPRGRILRFVRILQSHGLTATTRVTRGQDI 329
Query: 446 MAACGQL 452
ACGQL
Sbjct: 330 DGACGQL 336
>gi|366160142|ref|ZP_09460004.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
TW09308]
gi|432373144|ref|ZP_19616182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
gi|430895150|gb|ELC17421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
Length = 384
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKELGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|419586319|ref|ZP_14122282.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
67-8]
gi|419603218|ref|ZP_14137776.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
151-9]
gi|380566181|gb|EIA88863.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
67-8]
gi|380579260|gb|EIB01061.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
151-9]
Length = 356
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTLSTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|365920703|ref|ZP_09445025.1| 23S rRNA m2A2503 methyltransferase [Cardiobacterium valvarum F0432]
gi|364577686|gb|EHM54940.1| 23S rRNA m2A2503 methyltransferase [Cardiobacterium valvarum F0432]
Length = 367
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 195/334 (58%), Gaps = 8/334 (2%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
L W +P +A L K +Y + + D + L+K ++ L AE R ++
Sbjct: 15 LTAWFAEQGEKPFRARQLMKWIYHERVTDF--DAMTDLSKPLREKLKATAELRFPTVIAD 72
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
+SDGTRK +F D G IETV IP + R T+C+SSQ GCA+ C FC T G R+L
Sbjct: 73 RLASDGTRKWVFRYDCGNSIETVFIPED-DRGTLCISSQAGCALACPFCSTAHEGFNRNL 131
Query: 244 TAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
T+ EI+ Q A+ +L+ + +TNVV MGMGEPL N NV+ A +M+ +
Sbjct: 132 TSGEIIVQVWLAKEMLNCDRHGNNRVVTNVVLMGMGEPLVNFNNVLPATRLMMDDYAFGL 191
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R+VT+STSG+VP + ++ +LAVSL+A DE+RN I+P+N +Y L L++ +
Sbjct: 192 SKRRVTLSTSGIVPAIHALREVTDLSLAVSLHAPNDELRNQIVPVNARYGLDALLDACHQ 251
Query: 360 EL-HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418
+ H + V +EYVML GVNDS + A++L+ L++GIP KINLI FN GS+F +
Sbjct: 252 YVQHNGQHGGVTWEYVMLRGVNDSLEHARQLVELLRGIPGKINLIPFNAFPGSRFECSKR 311
Query: 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ F+ L G +R +RG+D AACGQL
Sbjct: 312 GDILAFQRYLTENGYVATIRKTRGEDIDAACGQL 345
>gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454]
gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454]
Length = 391
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 175/306 (57%), Gaps = 8/306 (2%)
Query: 156 DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRT 215
D + L K + L A R ++ TS+DGTRK L + +G +ETV IP +GR
Sbjct: 59 DAMTDLAKSLRDKLKTRASIRHPAVLQDHTSADGTRKWLLDVGEGNAVETVYIP-EQGRG 117
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------ITN 268
T+CVSSQ GCA+NC+FC TG+ G R+L EI+ Q A L + G ITN
Sbjct: 118 TLCVSSQAGCAVNCRFCSTGKQGFSRNLGVGEIIGQLWMAEFALRAARGGLAPGERVITN 177
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL N + V+ A +M+ + S R+VT+STSG+VP + + E ALAV
Sbjct: 178 VVMMGMGEPLLNFDAVVPAMRLMLDDHAYGLSRRRVTLSTSGVVPMIDRLAAELPVALAV 237
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKR 388
SL+A D +R+ ++P+NRKY L L+ L + FEY ML GVND + A++
Sbjct: 238 SLHAPNDALRDELVPLNRKYPLAELMAACNRYLRVAPRDFITFEYCMLDGVNDRDEHARQ 297
Query: 389 LIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAA 448
L+ L + +PCK NLI FNP S + E++ +F IL AG +R +RGDD AA
Sbjct: 298 LLALTRDVPCKFNLIPFNPFPESGLLRSHPERIKQFAQILIDAGVVTTVRRTRGDDIDAA 357
Query: 449 CGQLGN 454
CGQL
Sbjct: 358 CGQLAG 363
>gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
Length = 377
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 195/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E RA + + S+DGT
Sbjct: 32 AFRAEQ-VMKWIYHFGCDDF----DQMNNINKQLREKLKAKCEIRAPYVSEAQHSADGTI 86
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 87 KWAMRVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQ 144
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 145 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 204
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L+Q + + + ALA+SL+A D++R+ IMPIN ++ + +E +R + N
Sbjct: 205 TSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNAN 264
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND + A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 265 RGKVTVEYVLLDHVNDGTEHAHELAELLKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 324
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 325 KTLMQYEHTVTIRKTRGDDIDAACGQL 351
>gi|419605971|ref|ZP_14140355.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9860]
gi|380587560|gb|EIB08750.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
LMG 9860]
Length = 356
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSTKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|156973378|ref|YP_001444285.1| ribosomal RNA large subunit methyltransferase N [Vibrio harveyi
ATCC BAA-1116]
gi|388601640|ref|ZP_10160036.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
DS40M4]
gi|444426831|ref|ZP_21222235.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|205829926|sp|A7MU39.1|RLMN_VIBHB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
gi|444239929|gb|ELU51482.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 375
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDDF----DNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A DE+R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|359798970|ref|ZP_09301539.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
arsenitoxydans SY8]
gi|359363108|gb|EHK64836.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
arsenitoxydans SY8]
Length = 384
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/358 (38%), Positives = 196/358 (54%), Gaps = 21/358 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKML 169
R+ L G+ + L V +P +A L W G D + TD L ++F+ L
Sbjct: 5 ERINLLGLDGSALSDLVGQWGGKPFRARQLQRWMHQRGADSFDAMTD----LAREFRSQL 60
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ H AL + S+DGTRK LF + G IETV IP + R T+C+SSQ GC +NC
Sbjct: 61 ATHCRIEALPVNIEQRSTDGTRKWLFDVGQGNAIETVFIPED-DRGTLCISSQAGCVVNC 119
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------------ITNVVFMGMG 275
+FC TG G R+L +EI+ Q +A+R+L +++G+ I+NVV MGMG
Sbjct: 120 RFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVISNVVMMGMG 179
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + V+ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A D
Sbjct: 180 EPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPND 239
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++P+N+KY L L+ L F + FEY ML G+ND+ AK LI + +
Sbjct: 240 ALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQ 299
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ CK+NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 300 LRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLA 357
>gi|333928648|ref|YP_004502227.1| ribosomal RNA large subunit methyltransferase N [Serratia sp. AS12]
gi|333933601|ref|YP_004507179.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica AS9]
gi|386330471|ref|YP_006026641.1| ribosomal RNA large subunit methyltransferase N [Serratia sp. AS13]
gi|333475208|gb|AEF46918.1| Ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica AS9]
gi|333492708|gb|AEF51870.1| Ribosomal RNA large subunit methyltransferase N [Serratia sp. AS12]
gi|333962804|gb|AEG29577.1| Ribosomal RNA large subunit methyltransferase N [Serratia sp. AS13]
Length = 398
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/360 (37%), Positives = 209/360 (58%), Gaps = 16/360 (4%)
Query: 103 NINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE--- 159
++N +++ L ++ +++++ +P +A + K +Y +C D+ E
Sbjct: 21 SVNAETPATAKINLLDLNRQQMREFFAKMGEKPFRADQVMKWMY-----HYCCDDFEQMT 75
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
+NK + L AE RA + + S+DGT K + D V ETV IP + R T+CV
Sbjct: 76 DINKVLRNKLQSVAEIRAPEVAEEQRSADGTIKWAIKVGDQQV-ETVFIP-DGDRATLCV 133
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMG 275
SSQVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMG
Sbjct: 134 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERPITNVVMMGMG 193
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D
Sbjct: 194 EPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPND 253
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
++R+ I+PINRKY + + +R L N +V EYVML +NDS DDA +L ++
Sbjct: 254 KIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLAEVL 313
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 314 KDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|352082098|ref|ZP_08952921.1| radical SAM enzyme, Cfr family [Rhodanobacter sp. 2APBS1]
gi|389796713|ref|ZP_10199764.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter sp. 116-2]
gi|351682236|gb|EHA65342.1| radical SAM enzyme, Cfr family [Rhodanobacter sp. 2APBS1]
gi|388448238|gb|EIM04223.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter sp. 116-2]
Length = 376
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 191/326 (58%), Gaps = 11/326 (3%)
Query: 134 RPGQALMLWKRLYGD--DIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+P +A + K +Y D D + + TD + K + L+E A ++DGT
Sbjct: 31 KPYRAEQVMKWIYHDLEDDFENMTD----VGKALRAKLTEACYIGAPKTLLDKVATDGTH 86
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L +D G IETV IP R T+CVSSQ+GCA+NCQFC TG G R+L+ AEI+ Q
Sbjct: 87 KWLLGMDSGNAIETVYIP-EPTRGTLCVSSQIGCALNCQFCSTGAQGFNRNLSTAEIIGQ 145
Query: 252 AVFARRLL---SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A + L + + ITNVV MGMGEPL N +NV+KA +M + G + ++VT+ST
Sbjct: 146 VWVAAKYLGNVTHQNRRITNVVMMGMGEPLANFDNVLKAMKLMRDDLGFGLAAKRVTLST 205
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368
+GLVP + Q + +LAVSL+A DE+R +MPIN++Y + L+ + + K
Sbjct: 206 AGLVPLIDQLSEAIDVSLAVSLHAANDELRTELMPINKRYPIAELLAACQRWIARKPRTS 265
Query: 369 VLFEYVMLAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQFTPTTDEKMIEFRNI 427
+ FEY ++ GVND + A++LI L++ +P CK+NLI FNP G+QF + + F+
Sbjct: 266 ITFEYTLMQGVNDQPEHARQLIKLMRKLPTCKVNLIPFNPFPGTQFKRSDAADIHAFQTQ 325
Query: 428 LAGAGCTVFLRLSRGDDQMAACGQLG 453
L AG LR +RGDD AACGQL
Sbjct: 326 LLNAGVLTMLRRTRGDDIDAACGQLA 351
>gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
Length = 398
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + TD +NK + L AE RA + + S+DGT K
Sbjct: 54 FRADQ-VMKWMYHYCYDDFEQMTD----INKVLRAKLQRVAEIRAPEVAEEQRSTDGTIK 108
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 109 WAIKVGDQQV-ETVYIP-EADRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 166
Query: 253 VFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ S G+ ITNVV MGMGEPL N+ NV+ A +IM+ + G S R+VT+ST
Sbjct: 167 WRAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLST 226
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + + + ALA+SL+A TD++R+ I+PINRKY + + +R L N
Sbjct: 227 SGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANG 286
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 287 GRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 346
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G T +R +RGDD AACGQL
Sbjct: 347 VLMDYGFTTIVRKTRGDDIDAACGQLA 373
>gi|427401446|ref|ZP_18892518.1| ribosomal RNA large subunit methyltransferase N [Massilia timonae
CCUG 45783]
gi|425719555|gb|EKU82487.1| ribosomal RNA large subunit methyltransferase N [Massilia timonae
CCUG 45783]
Length = 389
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 188/334 (56%), Gaps = 19/334 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W +G A D + L K ++ L AE RA ++ T+SDGTRK
Sbjct: 27 FRAKQ-LQRWIHQFG----ASDFDSMTDLAKSLREKLKSRAEVRAPAIVSDKTASDGTRK 81
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + +G +ETV IP R T+C+S+Q GCA+NC+FC TG+ G R+LT AEI+ Q
Sbjct: 82 WLVDVGNGNAVETVFIP-EENRGTLCISTQAGCAVNCRFCSTGKQGFNRNLTVAEIIGQL 140
Query: 253 VFA----RRLLSSEVG-----SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
A RR E G ITNVV MGMGEPL N E + A +M+ + S R+
Sbjct: 141 WMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVTALKMMLDDNAYGLSRRR 200
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VT+STSG+VP + + + A+AVSL+A+ D +R+ ++P+N+KY L L+ + L F
Sbjct: 201 VTLSTSGVVPNIDKLSQDVPVAMAVSLHASNDALRDILVPLNKKYPLRELMAACKRYLEF 260
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ----GIPCKINLISFNPHCGSQFTPTTDE 419
+ FEY ML G NDS + A+ LI LV G+ CK NLI FNP S T + +
Sbjct: 261 APRDFITFEYCMLDGFNDSDEHARELIALVNDPVVGVNCKFNLIPFNPFPESGLTRSKNP 320
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
++ F +L AG +R +RGDD AACGQL
Sbjct: 321 RIKAFAEVLMNAGIVTTVRKTRGDDIDAACGQLA 354
>gi|322515331|ref|ZP_08068328.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
gi|322118707|gb|EFX90919.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
Length = 393
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 212/367 (57%), Gaps = 14/367 (3%)
Query: 95 CSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWA 152
C+ N V K ++ L ++ E+++ +P +A LM W +G+D +
Sbjct: 8 CASEIQAMNAAVQHPKSEKINLMNLTRQEMRELFAEMDEKPFRADQLMKWIYHFGEDNF- 66
Query: 153 HCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNR 212
D + +NK ++ L + AE +A + SSDGT K + D IETV IP
Sbjct: 67 ---DNMSNINKVLREKLKQIAEIKAPEVSVEQRSSDGTIKWAMQVGDQQ-IETVYIP-EA 121
Query: 213 GRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITN 268
R T+CVSSQVGCA+ C+FC T + G R+LT +EI+ Q A +++ + V ITN
Sbjct: 122 DRATLCVSSQVGCALACKFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITN 181
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
VV MGMGEPL N+ NVI A IM+ + S R+VT+ST+G+VP + + ALA+
Sbjct: 182 VVMMGMGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPAFDIMREKIDVALAI 241
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDA 386
SL+A DE+R+ IMPIN+KY + +L++++ + E+ N+ KV EYV+L VND + A
Sbjct: 242 SLHAPNDELRDEIMPINKKYNIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHA 301
Query: 387 KRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM 446
+L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 302 HQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDID 361
Query: 447 AACGQLG 453
AACGQL
Sbjct: 362 AACGQLA 368
>gi|410641928|ref|ZP_11352447.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
gi|410138830|dbj|GAC10634.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
Length = 380
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 207/355 (58%), Gaps = 13/355 (3%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNK 163
V+ K +++ L + L+++ S +P +A +M W G+ + D++ LNK
Sbjct: 4 VMSAKPTKINLLNFNRAGLREYFSSIGEKPFRADQVMKWIYQAGESDF----DQMTNLNK 59
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
++ L E +A + ++DGT K L+ G +ETV IP + R T+CVSSQV
Sbjct: 60 ALREKLKMQCEVKAPEIAYQQGATDGTIKFALRLEGGQEVETVWIP-DADRATLCVSSQV 118
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQA--VFARRLLSSEVGS--ITNVVFMGMGEPLH 279
GCA+ C FC T + G R+L+ AEI+ Q V LS++ ITNVV MGMGEPL
Sbjct: 119 GCALECTFCSTAQQGFNRNLSVAEIIGQVWRVATTIGLSNDSAKRPITNVVMMGMGEPLL 178
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N++NV+ A ++M+ + S R+VT+STSG+VP L ++ + ALA+SL+A D +R+
Sbjct: 179 NLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDTLRD 238
Query: 340 WIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
I+PIN+KY + + +R L N KV EYVML G+NDS D A L ++ P
Sbjct: 239 EIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVLADTP 298
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
KINLI FNP+ GS ++ +++ ++ F +L+ G V +R +RGDD AACGQL
Sbjct: 299 SKINLIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQL 353
>gi|386311731|ref|YP_006007787.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 397
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/361 (38%), Positives = 208/361 (57%), Gaps = 16/361 (4%)
Query: 102 DNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE-- 159
DN V S++ L ++ +++++ +P +A + K +Y +C D+ E
Sbjct: 19 DNAVVTASATSKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCFDDFEQM 73
Query: 160 -GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVC 218
+NK + L AE RA + + S+DG K + D V ETV IP R T+C
Sbjct: 74 TDINKVLRAKLQRVAEIRAPEVAEEQRSTDGAIKWAIKVGDQQV-ETVYIP-EGDRATLC 131
Query: 219 VSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGM 274
VSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S G+ ITNVV MGM
Sbjct: 132 VSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMGM 191
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATT 334
GEPL N+ NV+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A T
Sbjct: 192 GEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPT 251
Query: 335 DEVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
D++R+ I+PINRKY + + +R L N +V EYVML +NDS + A +L
Sbjct: 252 DDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAEC 311
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 312 LKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQL 371
Query: 453 G 453
Sbjct: 372 A 372
>gi|432863380|ref|ZP_20087427.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
gi|431403978|gb|ELG87238.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
Length = 384
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 206/353 (58%), Gaps = 16/353 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLNKDFK 166
K ++ L ++ +++++ + +P +A + K +Y +C D E+ +NK +
Sbjct: 14 KDEKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDINKVLR 68
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA
Sbjct: 69 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCA 126
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLN 186
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ I+
Sbjct: 187 NVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIV 246
Query: 343 PINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY + + +R L N +V EYVML VND + A +L L++ PCKI
Sbjct: 247 PINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKI 306
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 NLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|402489821|ref|ZP_10836614.1| radical SAM protein [Rhizobium sp. CCGE 510]
gi|401811160|gb|EJT03529.1| radical SAM protein [Rhizobium sp. CCGE 510]
Length = 408
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 202/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 25 LIGLSREEMGAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTN----VAKDMREML 80
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 81 KQHFTIERPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCLSSQVG 139
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDRQAPQGTIMPAEGRKVSNIV 199
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + +E LA+SL
Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGDEIGVMLAISL 259
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LIE + N ++ FEYVML VNDS +DAK LI
Sbjct: 260 HAVRDDLRDILVPINKKYPLKELIEACKSYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379
Query: 451 QL 452
QL
Sbjct: 380 QL 381
>gi|358635845|dbj|BAL23142.1| Fe-S cluster redox protein [Azoarcus sp. KH32C]
Length = 377
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 194/360 (53%), Gaps = 26/360 (7%)
Query: 124 LQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLK 181
L W +P +A +M W +G+ + TD + K + L++ A R
Sbjct: 15 LVAWFAERGEKPFRARQVMHWMHRFGETDFDAMTD----VAKSLRAKLAQEACIRPPQAI 70
Query: 182 DILTSSDGTRKILFMLDDGLVIETVVIP-CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLK 240
S DGTRK L + +E V IP NRG T+C+SSQ GCA++C FC TG+ G
Sbjct: 71 RDTVSHDGTRKWLLDVGSANAVEAVFIPETNRG--TLCISSQAGCALDCAFCSTGKQGFN 128
Query: 241 RHLTAAEIVEQAVFARRLLSSEVGS---------------ITNVVFMGMGEPLHNVENVI 285
R+LTAAEI+ Q A +LL I+NVV MGMGEPL N +NV+
Sbjct: 129 RNLTAAEIIGQLWLANKLLGGAAAPAGAKDAEGEPDNGRVISNVVMMGMGEPLTNFDNVV 188
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A +M+ + S R+VTVSTSG+VP + + +E ALAVSL+A D +R+ ++PIN
Sbjct: 189 TALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHAPDDALRDRLVPIN 248
Query: 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
+KY L L+ + L V FEYVML GVND+ A+ L+ LV+ +PCK NLI F
Sbjct: 249 QKYPLRELMAACQRYLERAPRDFVTFEYVMLDGVNDTDAHARALVALVRDVPCKFNLIPF 308
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRV 465
NP + F + +++ F +IL AG R +RGDD AACGQL G +Q RV
Sbjct: 309 NPFPNAGFERSHPDRIRRFASILIDAGIVTTTRKTRGDDVNAACGQLA--GQVQDRTRRV 366
>gi|57504577|ref|ZP_00370689.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
gi|419546291|ref|ZP_14085050.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2680]
gi|419549981|ref|ZP_14088503.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2688]
gi|419557516|ref|ZP_14095424.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
80352]
gi|57019472|gb|EAL56166.1| radical SAM enzyme, Cfr family [Campylobacter coli RM2228]
gi|380522705|gb|EIA48375.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2680]
gi|380531757|gb|EIA56767.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2688]
gi|380541960|gb|EIA66205.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
80352]
Length = 356
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R ++CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYSICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|365966432|ref|YP_004947994.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365745345|gb|AEW76250.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 379
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + D + LNK ++ L AE +A + S+DGT K
Sbjct: 35 FRADQ-LVKWIYHFGEDNF----DNMTNLNKALREKLKTMAEIKAPEVAVEQRSADGTTK 89
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C FC T + G R+LT AEI+ Q
Sbjct: 90 WAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQV 147
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 148 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 207
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + ALA+SL+A DE+R+ I+P+N+KY + LI+++ L N+
Sbjct: 208 SGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANH 267
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 268 GKVTIEYVMLDHINDHVEHAHQLAAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQK 327
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 328 TLMEYGLTVIVRKTRGDDIDAACGQLA 354
>gi|422956104|ref|ZP_16968578.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H494]
gi|371600402|gb|EHN89176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H494]
Length = 384
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A ++ L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQMAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|407695029|ref|YP_006819817.1| ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
gi|407252367|gb|AFT69474.1| Ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
Length = 380
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 193/327 (59%), Gaps = 14/327 (4%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W + D + TD + K ++ L+E AE R + S DGTRK
Sbjct: 29 FR-AQQVMKWIHHHQADHFDQMTD----VGKALRQKLTEVAEIRGPKVLHEGISRDGTRK 83
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+F D G +ETV IP R R T+CVSSQVGCA++C FC TG+ G +R LT+AEI+ Q
Sbjct: 84 WVFEADGGGAVETVFIPDGR-RGTLCVSSQVGCAVDCGFCSTGKQGFQRDLTSAEIIGQV 142
Query: 253 VFARRLLS--SEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A R +G ITNVV MGMGEP+ N + V+ A IM + G +++T+ST
Sbjct: 143 WQAGRAFGPRRNLGEHPITNVVMMGMGEPMLNYDAVLTAMRIMKDDLGYGIGKKRITLST 202
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR---EELHFKN 365
SG+VP++ Q + + ALAVSL+A DE+RN ++P+NRKY L L+ + + + ++
Sbjct: 203 SGVVPKIDQLSRDLDVALAVSLHAPNDELRNELVPLNRKYPLAELMAACKRYSDNITHRH 262
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
N + EYVML VND + A++L+ L+ GIP K+NLI FNP + + + + ++EF
Sbjct: 263 N-TITMEYVMLRDVNDKPEHARQLVKLLNGIPVKVNLIPFNPFPHAGYERSRKKDILEFH 321
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L G +R +RGDD AACGQL
Sbjct: 322 KFLNDHGLLTTVRTTRGDDIDAACGQL 348
>gi|345300389|ref|YP_004829747.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
gi|345094326|gb|AEN65962.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
Length = 388
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 207/358 (57%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + TD +
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTD----I 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + S+DGT K + D V ETV IP + R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSADGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + G+ ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A L L++
Sbjct: 246 RDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|407007098|gb|EKE22852.1| hypothetical protein ACD_6C00703G0004 [uncultured bacterium]
Length = 411
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 137/358 (38%), Positives = 206/358 (57%), Gaps = 23/358 (6%)
Query: 113 RVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
+V L GMS +++++ FR GQ + + + D E+ ++ ++ L
Sbjct: 30 KVNLLGMSRPQMEKFFEDMGEKKFRAGQVMKWIHQFFVTDF-----AEMTNISGKLREKL 84
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNRG---RTTVCVSSQVG 224
+ E +A + S DGTRK +F + DG ++ETV+IP R T+C+SSQVG
Sbjct: 85 EKICEIKAPEVVHKNYSKDGTRKWVFRVGDGEGSLVETVLIPAEHRSGLRRTLCISSQVG 144
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMGMGEPL 278
CA++C FC TG+ G +R LT AEI+ Q A +V S+TNVV MGMGEPL
Sbjct: 145 CALDCSFCSTGKQGFQRDLTQAEIIGQLWMANYSYMEDVPVLERERSVTNVVMMGMGEPL 204
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N + V+ + IM+ + S R+VT+STSG+VP++ Q + + + ALA+SL+A DE+R
Sbjct: 205 LNYDAVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDIDVALAISLHAPNDELR 264
Query: 339 NWIMPINRKYKLGLLIETLREELHFKNN----YKVLFEYVMLAGVNDSFDDAKRLIGLVQ 394
N ++PIN+KY L LI + + N V EYVML GVND + A+++I L++
Sbjct: 265 NELVPINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVNDHPEHAQQMIKLLK 324
Query: 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD AACGQL
Sbjct: 325 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQL 382
>gi|386399537|ref|ZP_10084315.1| 23S rRNA m2A2503 methyltransferase [Bradyrhizobium sp. WSM1253]
gi|385740163|gb|EIG60359.1| 23S rRNA m2A2503 methyltransferase [Bradyrhizobium sp. WSM1253]
Length = 400
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 204/357 (57%), Gaps = 19/357 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKK 167
+R L G+S TEL + P Q M LW +Y A +E+ ++K +
Sbjct: 25 ARPSLIGLSRTELADRLGEIGVAPAQRKMRVQQLWHWMYFRG--AQNFEEMTSVSKGIRA 82
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRTTVCVSS 221
L++H + S+DGTRK L L G +E V IP R T+CVSS
Sbjct: 83 ELAQHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVERAHEVECVYIP-ETDRGTLCVSS 141
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGS--ITNVVFMGMG 275
QVGC +NC FC+TG L R+LTA EIV Q + AR L+ E G+ +TN+V MGMG
Sbjct: 142 QVGCTLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADREDGTRRVTNIVMMGMG 201
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL+N E V A I+ +G+ S R++T+STSG+VP + + E LA+SL+A D
Sbjct: 202 EPLYNFEAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRD 261
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
E+RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDAK L+ +++G
Sbjct: 262 ELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKMLKG 321
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I KINLI FNP G+ + + +++ +F + AG + +R RG D +AACGQL
Sbjct: 322 IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 378
>gi|254369341|ref|ZP_04985353.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122291|gb|EDO66431.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 370
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 184/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L + A+ + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRHKLKDKAQITIPKVVFSKVSKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQ+GC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|422026819|ref|ZP_16373193.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
gi|414016811|gb|EKT00570.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
Length = 388
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 209/357 (58%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLN 162
V+P K +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +N
Sbjct: 14 VVPNKETKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMY-----HYCCDNFDEMTDIN 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQ
Sbjct: 69 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQ 126
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKVTGQRPITNVVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 187 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 247 DEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKET 306
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + ++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 PCKINLIPWNPFPGAPYGRSSTSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|62260668|gb|AAX77923.1| unknown protein [synthetic construct]
Length = 405
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 204/363 (56%), Gaps = 20/363 (5%)
Query: 102 DNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCT-----D 156
D+ ++L + +V L G++ ++ + S + A ++K W H D
Sbjct: 20 DDKHMLEMQQDKVNLLGLNQKAIEDFFISIGEKKFHARQVFK-------WIHKKGVIDFD 72
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTT 216
+ L K+ + L E A+ + S DGT K L + G +ETV I GR T
Sbjct: 73 AMTDLGKNLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDVG-GSAVETVFILA-EGRGT 130
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG----SITNVVFM 272
+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G ++TN+V M
Sbjct: 131 LCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGEHDFTVTNIVMM 190
Query: 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNA 332
GMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +S +LAVSL+A
Sbjct: 191 GMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHA 250
Query: 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392
D +RN I+PIN+KY + L+E + + + FEY ++ VND+ DA+ L+ L
Sbjct: 251 PNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVAL 310
Query: 393 VQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R +RGDD AACG
Sbjct: 311 LKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACG 370
Query: 451 QLG 453
QL
Sbjct: 371 QLA 373
>gi|398853514|ref|ZP_10610113.1| 23S rRNA methyltransferase [Pseudomonas sp. GM80]
gi|398239349|gb|EJN25060.1| 23S rRNA methyltransferase [Pseudomonas sp. GM80]
Length = 382
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVSKALRDKLKVI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A ++ L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMVELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQL 348
>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CFT073]
gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|386630287|ref|YP_006150007.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|386635207|ref|YP_006154926.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|386640048|ref|YP_006106846.1| radical SAM protein [Escherichia coli ABU 83972]
gi|422364837|ref|ZP_16445347.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|432412690|ref|ZP_19655352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|432432766|ref|ZP_19675193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|432437249|ref|ZP_19679637.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|432457589|ref|ZP_19699771.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|432496585|ref|ZP_19738381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|432505328|ref|ZP_19747051.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|432524722|ref|ZP_19761849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|432569611|ref|ZP_19806121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|432593743|ref|ZP_19830058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|432608411|ref|ZP_19844595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|432652051|ref|ZP_19887804.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|432784442|ref|ZP_20018621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|432845479|ref|ZP_20078279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|432974678|ref|ZP_20163515.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|432996233|ref|ZP_20184819.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|433000804|ref|ZP_20189328.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|433059003|ref|ZP_20246046.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|433088210|ref|ZP_20274580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|433116416|ref|ZP_20302205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|433126086|ref|ZP_20311641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|433140154|ref|ZP_20325407.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|433150071|ref|ZP_20335089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|433208650|ref|ZP_20392324.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|433213434|ref|ZP_20397024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|442608263|ref|ZP_21023023.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
gi|81475264|sp|Q8FF55.1|RLMN_ECOL6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|355421186|gb|AER85383.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|355426106|gb|AER90302.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|430934545|gb|ELC54900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|430952134|gb|ELC71341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|430962580|gb|ELC80437.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|430981596|gb|ELC98323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|431023843|gb|ELD37038.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|431037678|gb|ELD48654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|431051173|gb|ELD60848.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|431099101|gb|ELE04402.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|431127071|gb|ELE29386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|431137355|gb|ELE39202.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|431189906|gb|ELE89323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|431328865|gb|ELG16169.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|431394335|gb|ELG77871.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|431488410|gb|ELH68045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|431505263|gb|ELH83885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|431508196|gb|ELH86470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|431568536|gb|ELI41509.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|431603987|gb|ELI73403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|431633237|gb|ELJ01518.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|431643598|gb|ELJ11289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|431659158|gb|ELJ26056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|431669865|gb|ELJ36230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|431729935|gb|ELJ93554.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|431734459|gb|ELJ97860.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|441710868|emb|CCQ09000.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
Length = 384
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|386333819|ref|YP_006029990.1| hypothetical protein RSPO_c02157 [Ralstonia solanacearum Po82]
gi|334196269|gb|AEG69454.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
Length = 383
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 186/329 (56%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGAADFGEMTD----LAKSLREKLATRATIQAPAVISDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L EIV Q
Sbjct: 81 KWLVDVGAGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLGTGEIVGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVNDS + A+ L+ ++ +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDSVEHARELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|297733650|emb|CBI14897.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 106/132 (80%), Positives = 119/132 (90%)
Query: 342 MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
MPINRKY L LL++TLREEL K+NYKVLFEYVMLAGVNDS +DA+RLI LVQGIPCK+N
Sbjct: 1 MPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVN 60
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAP 461
LISFNPHCGSQF PT++EK+IEFRNILA AGC VFLR SRGDDQMAACGQLG PG +QAP
Sbjct: 61 LISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQLGKPGQVQAP 120
Query: 462 LLRVPEKFQTAI 473
LL+VP KFQ+A+
Sbjct: 121 LLQVPAKFQSAL 132
>gi|419541896|ref|ZP_14081033.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2548]
gi|419552205|ref|ZP_14090519.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2692]
gi|380524248|gb|EIA49866.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2548]
gi|380532098|gb|EIA57093.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2692]
Length = 356
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+++
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIEE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|417351020|ref|ZP_12128956.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|418512885|ref|ZP_13079121.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
gi|353569453|gb|EHC34017.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|366083097|gb|EHN47025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
Length = 388
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 209/357 (58%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGLN 162
V+P +++ L ++ +++++ ++ +P +A + K +Y +C D E+ +N
Sbjct: 14 VVPNNETKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMY-----HYCCDNFDEMTDIN 68
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQ
Sbjct: 69 KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQ 126
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 127 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPL 186
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 187 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIR 246
Query: 339 NWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 247 DEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKET 306
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 307 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
Length = 398
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 206/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
S++ L ++ +++++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 SKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCYDDFEQMTDINKVLRAK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 85 LQRVAEIRAPEVAEEQRSTDGTIKWAIKVGDQQV-ETVYIP-EGDRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLL----SSEVGSITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ ++ + ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+PI
Sbjct: 203 VPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPI 262
Query: 345 NRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + +R L N +V EYVML +NDS + A +L ++ PCKINL
Sbjct: 263 NRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|432835471|ref|ZP_20069009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
gi|431384635|gb|ELG68681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
Length = 384
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAVKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|417854881|ref|ZP_12500147.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Anand1_goat]
gi|338217251|gb|EGP03142.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Anand1_goat]
Length = 394
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 207/351 (58%), Gaps = 14/351 (3%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
++ L ++ +++++ ++ +P +A L+ W +G+D + D + +NK +
Sbjct: 25 AKKINLMNLTRQQMREFFKALGEKPFRADQLVKWIYHFGEDNF----DNMTNINKKLRDK 80
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L + AE +A + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 81 LKQVAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALA 138
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVENV 284
C FC T + G R+LT +EI+ Q A +++ + V ITNVV MGMGEPL NV NV
Sbjct: 139 CTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANV 198
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + S R+VT+STSG+VP L + + ALA+SL+A DE+R+ I+PI
Sbjct: 199 VPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVPI 258
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N+KY + +L++++ L N+ KV EYVML VND + A +L +++ PCKINL
Sbjct: 259 NKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKNTPCKINL 318
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLA 369
>gi|336124879|ref|YP_004566927.1| Radical SAM family enzyme [Vibrio anguillarum 775]
gi|335342602|gb|AEH33885.1| Radical SAM family enzyme [Vibrio anguillarum 775]
Length = 386
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 141/327 (43%), Positives = 191/327 (58%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + T+ +NK ++ L + E RA + SSDGT
Sbjct: 41 AFRADQ-VMKWIYHFGCDDFEQMTN----INKKLREQLQQRCEIRAPIVSQAQHSSDGTI 95
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 96 KWAMRVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 153
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 154 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 213
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 214 TSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIATSNAN 273
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A L L++G PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 274 RGKVTVEYVLLDHVNDDMDHAHELAKLMKGTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 333
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 334 KTLMQYEHTVTVRKTRGDDIDAACGQL 360
>gi|419540082|ref|ZP_14079324.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
Z163]
gi|419616265|ref|ZP_14149914.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
Z156]
gi|380517774|gb|EIA43881.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
Z163]
gi|380595932|gb|EIB16650.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
Z156]
Length = 356
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTLSTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A DE+R +MPIN+ Y + +++ +R +++FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRIMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|424886764|ref|ZP_18310372.1| 23S rRNA m2A2503 methyltransferase [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393176115|gb|EJC76157.1| 23S rRNA m2A2503 methyltransferase [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 408
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 25 LIGLSREEMAAALRDKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTN----VAKDMREML 80
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 81 KQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCISSQVG 139
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 199
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 259
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LIE + N ++ FEYVML VNDS +DAK LI
Sbjct: 260 HAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379
Query: 451 QL 452
QL
Sbjct: 380 QL 381
>gi|387771212|ref|ZP_10127378.1| 23S rRNA m2A2503 methyltransferase [Pasteurella bettyae CCUG 2042]
gi|386902417|gb|EIJ67257.1| 23S rRNA m2A2503 methyltransferase [Pasteurella bettyae CCUG 2042]
Length = 371
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 212/374 (56%), Gaps = 14/374 (3%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKML 169
++ L ++ +++++ + +P +A L+ W +G+D + D + +NK + L
Sbjct: 3 EKINLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNF----DNMTNINKKLRDKL 58
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
AE +A + SSDGT K + D IETV IP R T+CVSSQVGCA+ C
Sbjct: 59 KTVAEIKAPEIAVEQRSSDGTIKWAMQVGDQQ-IETVYIP-EADRATLCVSSQVGCALAC 116
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVENVI 285
FC T + G R+LT +EI+ Q A +++ + + ITNVV MGMGEPL NV NV+
Sbjct: 117 TFCSTAQQGFNRNLTVSEIIGQVWRASKVIGEFGVTGIRPITNVVMMGMGEPLLNVANVV 176
Query: 286 KAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345
A IM+ + S R+VT+STSG+VP L + ALA+SL+A DE+R+ I+PIN
Sbjct: 177 PAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSGMIDVALAISLHAPNDELRDEIVPIN 236
Query: 346 RKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
+KY + +LI+++ L N+ KV EYVML VNDS + A +L +++ PCKINLI
Sbjct: 237 KKYNIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDSIEHAHQLAEVLKNTPCKINLI 296
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLL 463
+NP + + +++ ++ +F+ L G TV +R +RGDD AACGQL +
Sbjct: 297 PWNPFPEAPYGKSSNTRVDKFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGEVIDRTKRT 356
Query: 464 RVPEKFQTAINASI 477
+F IN +
Sbjct: 357 AAKRQFGQNINVQV 370
>gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS]
gi|205829751|sp|A8A323.1|RLMN_ECOHS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS]
Length = 384
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 208/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIP-EVDRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|417852143|ref|ZP_12497780.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
gi|338217648|gb|EGP03496.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
Length = 394
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 206/351 (58%), Gaps = 14/351 (3%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
++ L ++ +++++ + +P +A L+ W +G+D + D + +NK +
Sbjct: 25 AKKINLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNF----DNMTNINKKLRDK 80
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L + AE +A + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 81 LKQVAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALA 138
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVENV 284
C FC T + G R+LT +EI+ Q A +++ + V ITNVV MGMGEPL NV NV
Sbjct: 139 CTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANV 198
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + S R+VT+STSG+VP L + + ALAVSL+A DE+R+ I+PI
Sbjct: 199 VPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAVSLHAPNDELRDEIVPI 258
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N+KY + +L++++ L N+ KV EYVML VND + A +L +++ PCKINL
Sbjct: 259 NKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKNTPCKINL 318
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLA 369
>gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia
proteamaculans 568]
gi|205829876|sp|A8GHW8.1|RLMN_SERP5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568]
Length = 398
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 206/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
+++ L ++ +L+++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 AKINLLDLNRQQLREFFAKMGEKPFRADQVMKWMY-----HYCCDDFEQMTDINKVLRNK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S+DGT K + D V ETV IP + R T+CVSSQVGCA+
Sbjct: 85 LQSVAEIRAPEVAEEQRSADGTIKWAIKVGDQQV-ETVYIP-DGDRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGALKVTGERPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D++R+ I+PI
Sbjct: 203 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKIRDDIVPI 262
Query: 345 NRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + +R L N +V EYVML +NDS DDA +L +++ PCKINL
Sbjct: 263 NRKYNIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLAEVLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|15603872|ref|NP_246946.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Pm70]
gi|378774950|ref|YP_005177193.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida 36950]
gi|81636369|sp|Q9CJJ8.1|RLMN_PASMU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597498|gb|AET16224.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida 36950]
Length = 394
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 207/352 (58%), Gaps = 14/352 (3%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
+ ++ L ++ +++++ + +P +A L+ W +G+D + D + +NK +
Sbjct: 24 QAKKINLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNF----DNMTNINKKLRD 79
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L + AE +A + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 80 KLKQVAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCAL 137
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVEN 283
C FC T + G R+LT +EI+ Q A +++ + V ITNVV MGMGEPL NV N
Sbjct: 138 ACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVAN 197
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343
V+ A IM+ + S R+VT+STSG+VP L + + ALA+SL+A DE+R+ I+P
Sbjct: 198 VVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVP 257
Query: 344 INRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKIN 401
IN+KY + +L++++ L N+ KV EYVML VND + A +L +++ PCKIN
Sbjct: 258 INKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKNTPCKIN 317
Query: 402 LISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
LI +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 318 LIPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLA 369
>gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36]
gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36]
Length = 371
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 204/348 (58%), Gaps = 14/348 (4%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFKKML 169
++ L + ++Q+ +P +A + K +Y DDI +E+ LNK ++ L
Sbjct: 5 KINLLDLDRKAMRQYFADIGEKPFRADQVMKWIYHEGCDDI-----NEMTNLNKKLREKL 59
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+A + S+DGT K +D G ETV IP + R T+CVSSQVGCA+ C
Sbjct: 60 LRETVIQAPEISKEQRSADGTIKWALKVD-GQEYETVYIP-DGDRATLCVSSQVGCALEC 117
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLL--SSEVGSITNVVFMGMGEPLHNVENVIKA 287
FC T + G R+L +EI+ Q A +++ +++ +ITNVV MGMGEPL N+ N++ A
Sbjct: 118 TFCSTAQQGFNRNLRVSEIIGQVWRASQVIGFNNKKRAITNVVMMGMGEPLLNMTNLVPA 177
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
NIM+ + G S R+VTVSTSG+VP L + + + ALA+SL+A+ D +R+ ++PIN+K
Sbjct: 178 LNIMLDDYGFGLSKRRVTVSTSGVVPALDKLADSIDVALAISLHASNDTLRDELVPINKK 237
Query: 348 YKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISF 405
Y + +L+ +++ + N KV EYV+L VNDS D A L L++ PCKINLI F
Sbjct: 238 YNIEMLLASVKNYIGKSNANRKKVTIEYVLLDHVNDSTDQAHELAHLLKDTPCKINLIPF 297
Query: 406 NPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NP GS + ++ ++ F +L TV +R +RGDD AACGQL
Sbjct: 298 NPFPGSDYGKPSNSRIDRFNKVLMEYENTVTIRKTRGDDIDAACGQLA 345
>gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
Length = 398
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + TD +NK + L AE RA + + S+DGT K
Sbjct: 54 FRADQ-VMKWMYHYCYDDFEQMTD----INKGLRAKLQRVAEIRAPEVAEEQRSTDGTIK 108
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 109 WAIKVGDQQV-ETVYIPEGE-RATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 166
Query: 253 VFARRLL----SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ S+ ITNVV MGMGEPL N+ NV+ A +IM+ + G S R+VT+ST
Sbjct: 167 WRAAKIIGALKSTGTRPITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLST 226
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALA+SL+A TD++R+ I+PINRKY + + +R L N
Sbjct: 227 SGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSKANG 286
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 287 GRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 346
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G T +R +RGDD AACGQL
Sbjct: 347 VLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|27375636|ref|NP_767165.1| hypothetical protein bll0525 [Bradyrhizobium japonicum USDA 110]
gi|81740269|sp|Q89X03.1|RLMN_BRAJA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|27348773|dbj|BAC45790.1| bll0525 [Bradyrhizobium japonicum USDA 110]
Length = 400
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 201/353 (56%), Gaps = 19/353 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
L G+S EL + P Q M LW +Y A DE+ ++K + L++
Sbjct: 29 LIGLSRNELADRLGEIGVAPAQRKMRVQQLWHWMYFRG--AQNFDEMTSISKGIRAELAQ 86
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRTTVCVSSQVGC 225
H + S+DGTRK L L G +E V IP R T+CVSSQVGC
Sbjct: 87 HFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVEKAHEVECVYIP-ETDRGTLCVSSQVGC 145
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGS--ITNVVFMGMGEPLH 279
+NC FC+TG L R+LTA EIV Q + AR L+ E G+ +TN+V MGMGEPL+
Sbjct: 146 TLNCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWADREDGTRRVTNIVMMGMGEPLY 205
Query: 280 NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRN 339
N + V A I+ +G+ S R++T+STSG+VP + + E LA+SL+A DE+RN
Sbjct: 206 NFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELRN 265
Query: 340 WIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDAK L+ L++GI K
Sbjct: 266 ELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKGIHAK 325
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
INLI FNP G+ + + +++ +F + AG + +R RG D +AACGQL
Sbjct: 326 INLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQL 378
>gi|344171691|emb|CCA84311.1| conserved hypothetical protein, predicted radical SAM enzyme
[Ralstonia syzygii R24]
Length = 383
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 187/329 (56%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGAADFGEMTD----LAKSLREKLAIRATIQAPAVISDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 81 KWLVDVGAGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAVRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPAMRLMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ R L F
Sbjct: 200 TLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACRRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVNDS + A+ L+ ++ +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDSVEHARELLRVIADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|383310914|ref|YP_005363724.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. HN06]
gi|421264754|ref|ZP_15715719.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|425064743|ref|ZP_18467868.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida X73]
gi|425066859|ref|ZP_18469979.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida P1059]
gi|380872186|gb|AFF24553.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. HN06]
gi|401687798|gb|EJS83499.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|404380645|gb|EJZ77135.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida P1059]
gi|404380929|gb|EJZ77418.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida X73]
Length = 394
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 206/351 (58%), Gaps = 14/351 (3%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
++ L ++ +++++ + +P +A L+ W +G+D + D + +NK +
Sbjct: 25 AKKINLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNF----DNMTNINKKLRDK 80
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L + AE +A + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 81 LKQVAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALA 138
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVENV 284
C FC T + G R+LT +EI+ Q A +++ + V ITNVV MGMGEPL NV NV
Sbjct: 139 CTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANV 198
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + S R+VT+STSG+VP L + + ALA+SL+A DE+R+ I+PI
Sbjct: 199 VPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVPI 258
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N+KY + +L++++ L N+ KV EYVML VND + A +L +++ PCKINL
Sbjct: 259 NKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKNTPCKINL 318
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLA 369
>gi|444349481|ref|ZP_21156908.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|443544554|gb|ELT54520.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 394
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 203/351 (57%), Gaps = 14/351 (3%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKM 168
+V L ++ +++++ +P +A L+ W +G+D + D + LNK ++
Sbjct: 17 AKKVNLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNF----DNMTNLNKALREK 72
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE +A + S+DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 73 LKTMAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALA 130
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVENV 284
C FC T + G R+LT AEI+ Q A +++ + V ITNVV MGMGEPL NV NV
Sbjct: 131 CTFCSTAQQGFNRNLTVAEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANV 190
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A IM+ + S R+VT+STSG+VP L + ALA+SL+A DE+R+ I+P+
Sbjct: 191 VPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPL 250
Query: 345 NRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
N+KY + LI+++ L N+ KV EYVML +ND + A +L +++ PCKINL
Sbjct: 251 NKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKNTPCKINL 310
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 311 IPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLA 361
>gi|407790344|ref|ZP_11137439.1| ribosomal RNA large subunit methyltransferase N [Gallaecimonas
xiamenensis 3-C-1]
gi|407204966|gb|EKE74945.1| ribosomal RNA large subunit methyltransferase N [Gallaecimonas
xiamenensis 3-C-1]
Length = 373
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 201/349 (57%), Gaps = 13/349 (3%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
++ L +S EL+ + +P +A +M W +G D + D++ +NK + L
Sbjct: 5 KINLLDLSRNELRAFFAEMDEKPFRADQVMKWIYHFGVDNF----DDMTNINKVLRGKLK 60
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQ 230
E A + SSDGT K + G +ETV IP + R T+CVSSQVGCA+ C
Sbjct: 61 ERCVIEAPEISQEQRSSDGTIKWALTVSGGQEVETVYIP-EKDRATLCVSSQVGCALECT 119
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIK 286
FC T + G R+L +EI+ Q A ++L + S ITNVV MGMGEPL N+ NV+
Sbjct: 120 FCSTAQQGFNRNLKVSEIIGQVWRAAKVLGPQGNSNQKPITNVVMMGMGEPLLNLANVVP 179
Query: 287 AANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINR 346
A +M+ + G S R+VT+STSG+VP L + + + ALA+SL+A TDE+R+ I+PIN+
Sbjct: 180 AMELMLDDLGYGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDELRDEIVPINK 239
Query: 347 KYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404
KY + + ++R L N +V EYVML VNDS D A +L ++ P KINLI
Sbjct: 240 KYNIDTFLTSVRGYLAKSNANQGRVTVEYVMLDHVNDSTDQAHQLAQCLKDTPAKINLIP 299
Query: 405 FNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+NP G+ + +++ ++ F +L G TV +R +RGDD AACGQL
Sbjct: 300 WNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLA 348
>gi|238921042|ref|YP_002934557.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
gi|259491987|sp|C5BET4.1|RLMN_EDWI9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
Length = 390
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 194/330 (58%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGL---NKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + + NK + L + AE RA + SSDG
Sbjct: 46 FRADQ-IMKW-------IYHYCCDDFDAMTDINKVLRARLKQVAEIRAPEVAVEQRSSDG 97
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 98 TIKWALQVGDQRV-ETVYIP-EDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 155
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ ++ + ITNVV MGMGEPL N+ NVI A IM+ + G S R+VT
Sbjct: 156 GQVWRAAKIIGAQKVTGNRPITNVVMMGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVT 215
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK- 364
+STSG+VP L + + + ALA+SL+A D +R+ I+PINRKY + + + ++R L
Sbjct: 216 LSTSGVVPALDKLGDTIDVALAISLHAPNDTIRDEIVPINRKYNIDMFLGSVRRYLEKSN 275
Query: 365 -NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +ND + A +L ++ PCKINLI +NP G+ F +++ ++
Sbjct: 276 ANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDR 335
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G TV +R +RGDD AACGQL
Sbjct: 336 FSKVLMEYGFTVIVRKTRGDDIDAACGQLA 365
>gi|384262254|ref|YP_005417441.1| ribosomal RNA large subunit methyltransferase N [Rhodospirillum
photometricum DSM 122]
gi|378403355|emb|CCG08471.1| Ribosomal RNA large subunit methyltransferase N [Rhodospirillum
photometricum DSM 122]
Length = 413
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 198/355 (55%), Gaps = 13/355 (3%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNK 163
++ + +RV L G+S +L + +P + LW +Y G+ +A T L
Sbjct: 30 LIQQNDTRVNLIGLSREDLGALLARWGEKPFRVKQLWHWIYHRGETDFARMT----SLGG 85
Query: 164 DFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQV 223
++ L ++ S DGT K L DG E V IP + R +C+SSQV
Sbjct: 86 VLRERLQAECTLTRPTIVRTQRSQDGTIKWLLRFTDGQEAEMVYIPED-DRGALCISSQV 144
Query: 224 GCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS------SEVGSITNVVFMGMGEP 277
GC + C+FC+TG L R+LTAAE+V Q + AR E ++NVV MGMGEP
Sbjct: 145 GCTLTCRFCHTGTQLLVRNLTAAEVVGQVMVARDTFDEWPSPIDESRMLSNVVVMGMGEP 204
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L+N + V A I++ +G+ S R++T+ST+G+VP + + +E LAVSL+A TD
Sbjct: 205 LYNYDAVATALRIIMDGEGIALSRRRITLSTAGVVPLIARCGDELGIKLAVSLHAPTDAQ 264
Query: 338 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397
RN IMPINRKY L L+ R N ++ FEY+ML NDS +DA+ LI LV+G+P
Sbjct: 265 RNEIMPINRKYPLAELMAACRAYPGASNARRITFEYLMLKDFNDSDEDARTLIDLVEGVP 324
Query: 398 CKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
CK NLI+FNP G+ + + ++ F +L AG + +RL RG D +AACGQL
Sbjct: 325 CKFNLIAFNPWPGAPYQTPSVARLERFAALLNDAGYSAPIRLPRGRDILAACGQL 379
>gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|451965885|ref|ZP_21919140.1| 23S rRNA methyltransferase RlmN [Edwardsiella tarda NBRC 105688]
gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|451315134|dbj|GAC64502.1| 23S rRNA methyltransferase RlmN [Edwardsiella tarda NBRC 105688]
Length = 411
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 219/391 (56%), Gaps = 26/391 (6%)
Query: 74 RRPLSTATCSPQIPLATIEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAF 133
R P +TA SP + D + + + + ++ L ++ +++++ +
Sbjct: 11 RAPDATAVESP------LSDIHLNPLSAEGAPCVAQPAEKINLLDLNRKQMREFFAAMGE 64
Query: 134 RPGQA--LMLWKRLYGDDIWAHCTDELEGL---NKDFKKMLSEHAEFRALSLKDILTSSD 188
+P +A +M W I+ +C D+ + + NK + L + AE RA + SSD
Sbjct: 65 KPFRADQIMKW-------IYHYCCDDFDAMTDINKVLRAKLKQVAEIRAPEVAVEQRSSD 117
Query: 189 GTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEI 248
GT K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI
Sbjct: 118 GTIKWALQVGDQRV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEI 175
Query: 249 VEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
+ Q A +++ ++ + ITNVV MGMGEPL N+ NVI A IM+ + G S R+V
Sbjct: 176 IGQVWRAAKIIGAQKVTGNRPITNVVMMGMGEPLLNMTNVIPAMEIMLDDFGFGLSKRRV 235
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
T+STSG+VP L + + + ALA+SL+A D +R+ I+PINRKY + + ++R L
Sbjct: 236 TLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDQIVPINRKYNIETFLASVRRYLEKS 295
Query: 365 --NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
N +V EYVML VND + A +L ++ PCKINLI +NP G+ F +++ ++
Sbjct: 296 NANQGRVTVEYVMLDHVNDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPFGRSSNSRID 355
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G TV +R +RGDD AACGQL
Sbjct: 356 RFSKVLMEYGFTVIVRKTRGDDIDAACGQLA 386
>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
Length = 357
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 189/330 (57%), Gaps = 10/330 (3%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
LQ+W FR Q L + DD A + ++K + L + +
Sbjct: 16 LQEWGEP-PFRASQILQWLHQRQVDDFAA-----MSNISKALRARLMAETRWDEPEVIAD 69
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
+ D TRK L L DG IETV IP R T+C+SSQVGC++ C FC TG GL R+L
Sbjct: 70 QLARDETRKWLLRLPDGNAIETVFIP-EEDRGTLCISSQVGCSLACSFCATGAQGLNRNL 128
Query: 244 TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
++ EIV Q ARR L + +ITNVVFMGMGEPL N++ VI +++ + S R+
Sbjct: 129 SSHEIVAQVRVARRHLG--LDAITNVVFMGMGEPLLNLKQVIPVIRLLLDDFAYGLSSRR 186
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VTVST+G++P L+Q E+ LA+SL+A+ +++R+ ++PINR Y L L+ R
Sbjct: 187 VTVSTAGVLPGLEQLGRETPVNLAISLHASRNDLRDELVPINRHYPLAQLMAACR-SYPL 245
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
++ FEYVML GVNDS DA+ L+ L++G+P +NLI FNP GS + ++ ++
Sbjct: 246 PPRRRITFEYVMLDGVNDSDADARALVRLLRGLPALVNLIPFNPFPGSPYRRSSLARIDA 305
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
FR I+ AG R RGDD AACGQL
Sbjct: 306 FREIVLSAGIMTVTRRPRGDDIAAACGQLA 335
>gi|410612514|ref|ZP_11323591.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
psychrophila 170]
gi|410167855|dbj|GAC37480.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
psychrophila 170]
Length = 380
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 205/353 (58%), Gaps = 9/353 (2%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDF 165
V+ + ++ L ++ L+ + +P +A + K +Y + +++ LNK
Sbjct: 5 VVSAQPKKINLLDLTREGLRTFFNEMGEKPFRAEQVMKWIYQQGVADF--EQMSNLNKAL 62
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGC 225
+ L E +A + T++DGT K L+ G +ETV IP + R T+CVSSQVGC
Sbjct: 63 RAKLQAKCEVKAPEIAYQKTAADGTIKFALKLEGGQEVETVWIP-DGDRATLCVSSQVGC 121
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQA--VFARRLLSSEVGS--ITNVVFMGMGEPLHNV 281
A+ C FC TG+ G R+L +EI+ Q V L+++ ITNVV MGMGEPL NV
Sbjct: 122 ALECTFCSTGQQGFNRNLKVSEIIGQVWRVATTIGLNNDTAKRPITNVVMMGMGEPLLNV 181
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
+NV+ A +M+ + S R+VT+STSG+VP L ++ + ALA+SL+A + +R+ +
Sbjct: 182 KNVVPAMELMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDNALRDVL 241
Query: 342 MPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
+P+N+KY + + + ++R L N KV EYVML G+NDS D A L ++ PCK
Sbjct: 242 VPVNKKYPIEVFLASVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVLADTPCK 301
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
INLI FNP+ GS +T +++ ++ F +L G V +R +RGDD AACGQL
Sbjct: 302 INLIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGLIVVVRRTRGDDIDAACGQL 354
>gi|387824635|ref|YP_005824106.1| radical SAM superfamily protein [Francisella cf. novicida 3523]
gi|332184101|gb|AEE26355.1| radical SAM superfamily protein [Francisella cf. novicida 3523]
Length = 370
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 183/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E E + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRNKLKEKTEITIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A D +RN I+PIN+KY + L++ + + + FEY ++ +ND
Sbjct: 214 SGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLKACKLYAEKGPHKHITFEYTLMEEIND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
Length = 398
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 205/351 (58%), Gaps = 16/351 (4%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKM 168
S++ L ++ +++++ +P +A + K +Y +C D+ E +NK +
Sbjct: 30 SKINLLDLNRQQMREFFAEMGEKPFRADQVMKWMY-----HYCYDDFEQMTDINKGLRAK 84
Query: 169 LSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228
L AE RA + + S DGT K + D V ETV IP R T+CVSSQVGCA+
Sbjct: 85 LQRVAEIRAPEVAEEQRSIDGTIKWAIKVGDQQV-ETVYIP-EGDRATLCVSSQVGCALE 142
Query: 229 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENV 284
C+FC T + G R+L +EI+ Q A +++ S G+ ITNVV MGMGEPL N+ NV
Sbjct: 143 CKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNV 202
Query: 285 IKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
+ A +IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD++R+ I+PI
Sbjct: 203 VPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPI 262
Query: 345 NRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
NRKY + + +R L N +V EYVML +NDS + A +L ++ PCKINL
Sbjct: 263 NRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINL 322
Query: 403 ISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|298293307|ref|YP_003695246.1| Cfr family radical SAM protein [Starkeya novella DSM 506]
gi|296929818|gb|ADH90627.1| radical SAM enzyme, Cfr family [Starkeya novella DSM 506]
Length = 409
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 189/333 (56%), Gaps = 24/333 (7%)
Query: 141 LWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML--- 197
LW +Y + + DE+ + K + L E + S+DGTRK L L
Sbjct: 57 LWHWIYLRGVTSF--DEMTNVGKGLRAKLEEAFTLARPEVVVEQVSNDGTRKWLLRLPPD 114
Query: 198 ---DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF 254
D +E V IP R T+CVSSQVGC +NC FC+TG L R+LTAAEIV Q +
Sbjct: 115 IAGDKPHDVEMVYIP-ESDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAAEIVAQVMV 173
Query: 255 ARRLLSSEVGS---------------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
AR L G +TN+VFMGMGEPL+ ++V +A ++ +GL
Sbjct: 174 ARDRLGDYPGQERAVGPGLPTEGDRLVTNIVFMGMGEPLYAYDSVARAIEVLADGEGLGI 233
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
R++TVSTSG+VP++++ E LA+SL+A DE+R+ ++PIN+KY L L++ R
Sbjct: 234 GKRRITVSTSGVVPEIEKLGREVGPMLAISLHAVRDELRDVLVPINKKYPLKDLLDACRT 293
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N ++ FEYVML GVNDS DAK L+ L+ GIP KINLI FNP G+++ + E
Sbjct: 294 YPAASNAKRITFEYVMLKGVNDSPADAKALVRLLAGIPAKINLIPFNPWPGTKYECSDWE 353
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F +I+ AG + +R RG D +AACGQL
Sbjct: 354 TIERFSDIVFRAGYSSPVRTPRGRDILAACGQL 386
>gi|398879597|ref|ZP_10634689.1| 23S rRNA methyltransferase [Pseudomonas sp. GM67]
gi|398882210|ref|ZP_10637180.1| 23S rRNA methyltransferase [Pseudomonas sp. GM60]
gi|398196305|gb|EJM83318.1| 23S rRNA methyltransferase [Pseudomonas sp. GM67]
gi|398199459|gb|EJM86401.1| 23S rRNA methyltransferase [Pseudomonas sp. GM60]
Length = 380
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 200/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ + L DD D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDF-----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPATADRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|419543899|ref|ZP_14082871.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2553]
gi|419548249|ref|ZP_14086879.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2685]
gi|419559722|ref|ZP_14097376.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
86119]
gi|419609874|ref|ZP_14143951.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H8]
gi|380525952|gb|EIA51443.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2553]
gi|380527686|gb|EIA53042.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
2685]
gi|380538029|gb|EIA62556.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
86119]
gi|380591254|gb|EIB12240.1| ribosomal RNA large subunit methyltransferase N [Campylobacter coli
H8]
Length = 356
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 187/316 (59%), Gaps = 16/316 (5%)
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP- 209
+A+ ++ L KD + L++ F L S DG+ K LF L DGL IE+V++P
Sbjct: 36 YANNFSDMSSLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPM 95
Query: 210 -----------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRL 258
+ R T+CVSSQVGC C FC T + GLKR+L+A EIV Q ++ ++
Sbjct: 96 KEEQFDEEGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQ 155
Query: 259 LSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQF 318
+ N+V+MGMGEPL N++NV KA I+ GL SPR+ T+STSGL Q+K+
Sbjct: 156 NNIPYERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKE- 214
Query: 319 LNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376
L E N LA+SL+A +E+R +MPIN+ Y + +++ +R +V+FEY+++
Sbjct: 215 LGEMNLGVLLAISLHAVNNELRTELMPINKAYNIAAIMDAVR-AFPIDQRKRVMFEYLLI 273
Query: 377 AGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436
G+ND + AK L+ L+ GI K+NLI FNPH GS + E I+F+++L+ G T
Sbjct: 274 DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLENAIKFQDLLSAKGVTCT 333
Query: 437 LRLSRGDDQMAACGQL 452
+R S+G D AACGQL
Sbjct: 334 IRESKGLDISAACGQL 349
>gi|183599740|ref|ZP_02961233.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
gi|386741991|ref|YP_006215170.1| ribosomal RNA large subunit methyltransferase N [Providencia
stuartii MRSN 2154]
gi|188022000|gb|EDU60040.1| 23S rRNA m2A2503 methyltransferase [Providencia stuartii ATCC
25827]
gi|384478684|gb|AFH92479.1| ribosomal RNA large subunit methyltransferase N [Providencia
stuartii MRSN 2154]
Length = 393
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 212/362 (58%), Gaps = 21/362 (5%)
Query: 104 INVLPKKGS-RVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE- 159
I+V P+ + ++ L ++ +++++ +P +A +M W I+ +C D+ +
Sbjct: 16 ISVTPENNTQKINLLDLNRKQMREFFAQMGEKPFRADQVMKW-------IYHYCYDDFDQ 68
Query: 160 --GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTV 217
+NK + L E AE RA + + S+DGT K + D V ETV IP + R T+
Sbjct: 69 MTDINKALRAKLKEVAEIRAPEVAEEQRSADGTIKWAITVGDQQV-ETVYIPED-DRATL 126
Query: 218 CVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMG 273
CVSSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MG
Sbjct: 127 CVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMG 186
Query: 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNAT 333
MGEPL N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A
Sbjct: 187 MGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAP 246
Query: 334 TDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIG 391
TD++R+ I+PIN+KY + + ++R L N +V EYVML +NDS + A +L
Sbjct: 247 TDDIRDDIVPINKKYNIETFLSSVRRYLSKSNANGGRVTVEYVMLDHINDSIEQAHQLAE 306
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
++ P KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQ
Sbjct: 307 CLKDTPSKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQ 366
Query: 452 LG 453
L
Sbjct: 367 LA 368
>gi|444344086|ref|ZP_21152412.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|443544811|gb|ELT54724.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 386
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + D + LNK ++ L AE +A + S+DGT K
Sbjct: 42 FRADQ-LVKWIYHFGEDNF----DNMTNLNKALREKLKTMAEIKAPEVAVEQRSADGTIK 96
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C FC T + G R+LT AEI+ Q
Sbjct: 97 WAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQV 154
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 155 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 214
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + ALA+SL+A DE+R+ I+P+N+KY + LI+++ L N+
Sbjct: 215 SGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANH 274
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 275 GKVTIEYVMLDHINDHVEHAHQLAAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQK 334
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 335 TLMEYGLTVIVRKTRGDDIDAACGQLA 361
>gi|397689423|ref|YP_006526677.1| Ribosomal RNA large subunit methyltransferase N [Melioribacter
roseus P3M]
gi|395810915|gb|AFN73664.1| Ribosomal RNA large subunit methyltransferase N [Melioribacter
roseus P3M]
Length = 353
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/358 (39%), Positives = 202/358 (56%), Gaps = 29/358 (8%)
Query: 112 SRVLLKGMSFTELQQWVRS--HAFRPGQALMLWKRLYGDDIWAHCT---DELEGLNKDFK 166
S+ +LKG++ EL+ + S A G L W I+ H +EL K+ +
Sbjct: 5 SKKILKGLTLNELRSYFESIGEAKYRGDQLFNW-------IYNHIVFDPEELSNFPKNLR 57
Query: 167 KMLSEHAEFRALSLKDILTS-SDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGC 225
L+E E L+L+D S S GT K LF DG IE+V+IP + R T+C+S+QVGC
Sbjct: 58 IRLTEETELITLTLQDKQHSVSTGTVKYLFSTKDGHKIESVLIP-DGDRNTLCLSTQVGC 116
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG--SITNVVFMGMGEPLHNVEN 283
++C+FC TG MG KR+L+A EI +Q + L++S+ G ITN+VFMGMGEPL N N
Sbjct: 117 PLDCKFCATGLMGFKRNLSAGEITDQYL----LIASDYGKEKITNIVFMGMGEPLTNYRN 172
Query: 284 VIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIM 342
+ A I HE S ++TVST+G+ ++++ + LA SL++ D++RN IM
Sbjct: 173 TLTAIEIFTHELSKSLSRNRITVSTAGIPDRIRELADSGLRVKLAFSLHSAFDDIRNKIM 232
Query: 343 PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402
PIN+KY L IE L+ K ++ FEY ML G+ND +D K L + IP KIN+
Sbjct: 233 PINKKYPLEKNIEALK-YYAAKTKTRITFEYTMLRGINDRDEDIKELAKICSRIPSKINI 291
Query: 403 ISFNP-------HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
I FN ++ PT E++I F + L +VF+R ++GDD AACGQL
Sbjct: 292 IPFNSIEHMNPGGISAELEPTPYEEIINFADKLRQRNISVFIRDTQGDDIAAACGQLA 349
>gi|389840011|ref|YP_006342095.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
gi|387850487|gb|AFJ98584.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
Length = 388
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 206/353 (58%), Gaps = 16/353 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFK 166
K ++ L ++ ++++ ++ +P +A + K +Y DD DE+ +NK +
Sbjct: 18 KSEKINLLDLNRQAMREFFKTLGEKPFRADQVMKWMYHYCCDDF-----DEMTDINKVLR 72
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA
Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCA 130
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLT 190
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ I+
Sbjct: 191 NVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIV 250
Query: 343 PINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY + + +R + N +V EYVML VND + A +L L++ PCKI
Sbjct: 251 PINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKI 310
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 311 NLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
symbiont]
Length = 376
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 207/357 (57%), Gaps = 16/357 (4%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLN 162
V+ K ++ L ++ +++++ +P +A + K +Y +C D+ E +N
Sbjct: 2 VVSPKNEKINLLDLNRQQMREFFVEMGEKPFRADQVMKWMY-----HYCCDDFEQMTDIN 56
Query: 163 KDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ 222
K + L + AE RA + + + SSDGT K + D LV ETV IP R T+CVSSQ
Sbjct: 57 KVLRGKLMQRAEIRAPEVAEEMRSSDGTIKWAIRVGDQLV-ETVYIP-EADRATLCVSSQ 114
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPL 278
VGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL
Sbjct: 115 VGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPL 174
Query: 279 HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVR 338
N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R
Sbjct: 175 LNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIR 234
Query: 339 NWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396
+ I+PIN+KY + + ++ + N +V EYVML VNDS + A L L++
Sbjct: 235 DDIVPINKKYNIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHELAALLKET 294
Query: 397 PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 295 PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 351
>gi|257093692|ref|YP_003167333.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046216|gb|ACV35404.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 373
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/276 (46%), Positives = 163/276 (59%), Gaps = 9/276 (3%)
Query: 186 SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTA 245
S DGTRK LF + G +E V IP R T+C+S+Q GCA++C FC TG+ G R+LT
Sbjct: 73 SDDGTRKFLFDVGGGNAVEAVFIP-EAERGTLCISTQAGCALDCSFCSTGKQGFNRNLTV 131
Query: 246 AEIVEQAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297
AEIV Q AR L + I+NVV MGMGEPL N++N + A +M+ +
Sbjct: 132 AEIVGQLWQARHSLGAYAAGETAGGERVISNVVLMGMGEPLANLDNTVTALRLMLDDNAY 191
Query: 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357
S R+VTVSTSGLVP + + NE ALAVSL+A D +R+ ++PINRKY L L+
Sbjct: 192 GLSRRRVTVSTSGLVPAMDRLRNECPVALAVSLHAPNDRLRDELVPINRKYPLHELMSAC 251
Query: 358 REELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT 417
L V FEYVMLAGVNDS A L+ L + +PCK NLI FNP GS + ++
Sbjct: 252 LRYLEKAPRDFVTFEYVMLAGVNDSDAQAHELLALTRDVPCKFNLIPFNPFPGSPYHRSS 311
Query: 418 DEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
++ +F L AG R +RGDD AACGQL
Sbjct: 312 APRIRQFAETLIDAGVVTTTRKTRGDDIDAACGQLA 347
>gi|258406363|ref|YP_003199105.1| ribosomal RNA large subunit methyltransferase N [Desulfohalobium
retbaense DSM 5692]
gi|257798590|gb|ACV69527.1| radical SAM enzyme, Cfr family [Desulfohalobium retbaense DSM 5692]
Length = 359
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 196/340 (57%), Gaps = 7/340 (2%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
+ +SF +L W+ +A +W+ L+ A +++ ++K + LS+
Sbjct: 6 IHDISFDDLAAWLTEQGQPRFRAEQIWQWLWIKG--ATSFEDMTNVSKSLRSALSQVFPI 63
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 235
++ ++ TS+DGTRK L L DG V+ETV+IP T C+S+QVGC + C FC TG
Sbjct: 64 ALPTVAEVHTSADGTRKFLLNLHDGHVLETVLIPGGE-HFTQCLSTQVGCNLGCTFCSTG 122
Query: 236 RMGLKRHLTAAEIVEQAVFAR-RLLSSEVG-SITNVVFMGMGEPLHNVENVIKAANIMVH 293
+MGL R+L+AAEI Q + AR L + G + N+VFMGMGEPL N ENV A + ++H
Sbjct: 123 QMGLTRNLSAAEIAGQVIVARNHLWQTGTGMRLRNLVFMGMGEPLLNWENVDNALDRLIH 182
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP-INRKYKLGL 352
++FSPR+VTVST G+ L + +LAVSL+A E+R IMP R L
Sbjct: 183 ASAMNFSPRRVTVSTVGVPGTLDALGHSHKASLAVSLHAPNQELREKIMPRAARMLPLPD 242
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
L+ LR +V EYV+L GVNDS D A++L+ + GI CK+NLI+FNP G
Sbjct: 243 LLARLRS-YPMAPRQRVTIEYVLLGGVNDSLDQARQLVRCLNGIRCKVNLIAFNPCPGLP 301
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ E+++ F +L G T LR S+G D AACGQL
Sbjct: 302 YSAPETEQVLAFETLLRDKGLTATLRKSKGQDISAACGQL 341
>gi|424897405|ref|ZP_18320979.1| 23S rRNA m2A2503 methyltransferase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393181632|gb|EJC81671.1| 23S rRNA m2A2503 methyltransferase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 416
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 200/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 33 LIGLSRQEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTN----VAKDMREML 88
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 89 KQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCISSQVG 147
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 148 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 207
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 208 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 267
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LIE + N ++ FEYVML VNDS +DAK LI
Sbjct: 268 HAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 327
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L+ G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 328 KLLNGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 387
Query: 451 QL 452
QL
Sbjct: 388 QL 389
>gi|416076401|ref|ZP_11585482.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348005005|gb|EGY45495.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
Length = 379
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + D + LNK ++ L AE +A + S+DGT K
Sbjct: 35 FRADQ-LVKWIYHFGEDNF----DNMTNLNKALREKLKTMAEIKAPEVAVEQRSADGTIK 89
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C FC T + G R+LT AEI+ Q
Sbjct: 90 WAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQV 147
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 148 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 207
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + ALA+SL+A DE+R+ I+P+N+KY + LI+++ L N+
Sbjct: 208 SGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANH 267
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 268 GKVTIEYVMLDHINDHVEHAHQLAAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQK 327
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 328 TLMEYGLTVIVRKTRGDDIDAACGQLA 354
>gi|403051770|ref|ZP_10906254.1| putative Fe-S-cluster redox enzyme [Acinetobacter bereziniae LMG
1003]
gi|445414088|ref|ZP_21433813.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
gi|444764907|gb|ELW89212.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
Length = 416
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 203/360 (56%), Gaps = 23/360 (6%)
Query: 111 GSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKK 167
+V L GMS +L+++ FR GQ + + + D E+ ++ ++
Sbjct: 33 AQKVNLLGMSRPQLEKFFEEMGEKKFRAGQVMKWIHQFFVTDFA-----EMTNISGKLRE 87
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNR---GRTTVCVSSQ 222
L E +A + S DGTRK +F + DG ++ETV+IP R T+C+SSQ
Sbjct: 88 KLERICEIKAPEVVHRNYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGSRKTLCISSQ 147
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMGMGE 276
VGCA++C FC TG+ G +R L EI+ Q A +V S+TNVV MGMGE
Sbjct: 148 VGCALDCSFCSTGKQGFQRDLLPDEIIGQLWMANYSYMEDVPVAERERSVTNVVMMGMGE 207
Query: 277 PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDE 336
PL N + V+ + NIM+ + S R+VT+STSG+VP++ Q + + ALA+SL+A DE
Sbjct: 208 PLLNYDAVLSSMNIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDE 267
Query: 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYK----VLFEYVMLAGVNDSFDDAKRLIGL 392
+RN ++PIN+KY L LI + + N V EYVML GVND + A+++I L
Sbjct: 268 LRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVNDQPEHAQQMIKL 327
Query: 393 VQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
++ +P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD AACGQL
Sbjct: 328 LKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQL 387
>gi|398858743|ref|ZP_10614430.1| 23S rRNA methyltransferase [Pseudomonas sp. GM79]
gi|398238470|gb|EJN24197.1| 23S rRNA methyltransferase [Pseudomonas sp. GM79]
Length = 382
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 200/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ + L DD D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDF-----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPATADRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|354724673|ref|ZP_09038888.1| ribosomal RNA large subunit methyltransferase N [Enterobacter mori
LMG 25706]
Length = 388
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 207/358 (57%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
I +P K ++ L ++ +++++ + +P +A +M W Y D + TD +
Sbjct: 12 IPAVPNKNGKINLLDLNRQQMREFFKDMGEKPFRADQVMKWMYHYCSDNFDDMTD----I 67
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 68 NKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 125
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE--VGS--ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + G+ ITNVV MGMGEP
Sbjct: 126 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGTRPITNVVMMGMGEP 185
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +
Sbjct: 186 LLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAI 245
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A L L++
Sbjct: 246 RDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD 305
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI ++P G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 306 TPCKINLIPWSPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ATCC BAA-894]
gi|417791222|ref|ZP_12438697.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|424800635|ref|ZP_18226177.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|429116542|ref|ZP_19177460.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|429121143|ref|ZP_19181789.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449307260|ref|YP_007439616.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
gi|205829756|sp|A7MGV3.1|RLMN_CROS8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
gi|333954665|gb|EGL72492.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|423236356|emb|CCK08047.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|426319671|emb|CCK03573.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|426324427|emb|CCK12526.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449097293|gb|AGE85327.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
Length = 388
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 206/353 (58%), Gaps = 16/353 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFK 166
K ++ L ++ ++++ ++ +P +A + K +Y DD DE+ +NK +
Sbjct: 18 KSEKINLLDLNRQAMREFFKTLGEKPFRADQVMKWMYHYCCDDF-----DEMTDINKVLR 72
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA
Sbjct: 73 GKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCA 130
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLT 190
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ I+
Sbjct: 191 NVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIV 250
Query: 343 PINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY + + +R + N +V EYVML VND + A +L L++ PCKI
Sbjct: 251 PINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKI 310
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 311 NLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 363
>gi|417708574|ref|ZP_12357605.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|417713570|ref|ZP_12362535.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|417718409|ref|ZP_12367306.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|417828928|ref|ZP_12475479.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|420321407|ref|ZP_14823235.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|420331866|ref|ZP_14833523.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|335574783|gb|EGM61101.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|391247478|gb|EIQ06727.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|391251426|gb|EIQ10641.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
Length = 384
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 208/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGL 161
NV K G ++ L ++ +++++ + FR Q +M W Y D + DE+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKTFRADQ-VMKWMYHYCCDNF----DEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|389783332|ref|ZP_10194765.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter
spathiphylli B39]
gi|388434846|gb|EIL91775.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter
spathiphylli B39]
Length = 374
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 192/326 (58%), Gaps = 11/326 (3%)
Query: 134 RPGQALMLWKRLYGD--DIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+P +A + K +Y D D + + TD + K + L+E A ++DGT
Sbjct: 29 KPYRAEQVMKWIYHDLEDNFENMTD----VGKALRAKLTEVCYIGAPKTLLDKVATDGTH 84
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L +D G IETV IP R T+CVSSQ+GCA+NCQFC TG G R+L+ AEI+ Q
Sbjct: 85 KWLLGMDSGNAIETVYIP-EPTRGTLCVSSQIGCALNCQFCSTGAQGFNRNLSTAEIIGQ 143
Query: 252 AVFARRLL---SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A + L + + ITNVV MGMGEPL N ENV+KA +M + G + ++VT+ST
Sbjct: 144 VWVAAKYLGNVTHQNRRITNVVMMGMGEPLANFENVLKAMKLMRDDLGFGLAAKRVTLST 203
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368
+G+VP + Q + + +LAVSL+A D++R +MPIN++Y L L+ + + K
Sbjct: 204 AGMVPLIDQLSDAIDVSLAVSLHAANDDLRTELMPINKRYPLAELLAACQRWVARKPRTS 263
Query: 369 VLFEYVMLAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQFTPTTDEKMIEFRNI 427
+ FEY ++ G+ND + ++LI L++ +P CK+NLI FNP G+QF + + +F+
Sbjct: 264 ITFEYTLMKGINDQPEHVRQLIKLMRKLPTCKVNLIPFNPFPGTQFKRSDANDIHQFQTQ 323
Query: 428 LAGAGCTVFLRLSRGDDQMAACGQLG 453
L AG LR +RGDD AACGQL
Sbjct: 324 LLNAGVLTMLRRTRGDDIDAACGQLA 349
>gi|209551296|ref|YP_002283213.1| radical SAM protein [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|254807197|sp|B5ZTF1.1|RLMN_RHILW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|209537052|gb|ACI56987.1| radical SAM enzyme, Cfr family [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 408
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 25 LIGLSREEMGAALRERGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTN----VAKDMREML 80
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 81 KQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCISSQVG 139
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 199
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 259
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LIE + N ++ FEYVML VNDS +DAK LI
Sbjct: 260 HAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379
Query: 451 QL 452
QL
Sbjct: 380 QL 381
>gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
gi|387868669|ref|YP_005700138.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
FL6-60]
gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
FL6-60]
Length = 411
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 194/330 (58%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + +NK + L + AE RA + SSDG
Sbjct: 67 FRADQ-IMKW-------IYHYCCDDFDVMTDINKVLRAKLKQVAEIRAPEVAVEQRSSDG 118
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 119 TIKWALQVGDQRV-ETVYIP-EDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 176
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ ++ + ITNVV MGMGEPL N+ NVI A IM+ + G S R+VT
Sbjct: 177 GQVWRAAKIIGAQKVTGNRPITNVVMMGMGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVT 236
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK- 364
+STSG+VP L + + + ALA+SL+A D +R+ I+PINRKY + + + ++R L
Sbjct: 237 LSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINRKYNIDMFLGSVRRYLEKSN 296
Query: 365 -NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N +V EYVML +ND + A +L ++ PCKINLI +NP G+ F +++ ++
Sbjct: 297 ANQGRVTVEYVMLDHINDGTEHAHQLAECLKDTPCKINLIPWNPFPGAPFGRSSNSRIDR 356
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G TV +R +RGDD AACGQL
Sbjct: 357 FSKVLMEYGFTVIVRKTRGDDIDAACGQLA 386
>gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 415
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 208/353 (58%), Gaps = 14/353 (3%)
Query: 108 PKKGSRVL-LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFK 166
PK+ +L L EL + FR Q LM W +G++ + D + +NK +
Sbjct: 45 PKEKINLLNLNRQEMRELFAEMGEKPFRADQ-LMKWIYHFGEENF----DNMSNINKVLR 99
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
+ L AE +A + S+DGT K + D IETV IP + R T+CVSSQVGCA
Sbjct: 100 EKLKRIAEIKAPEVAVEQRSADGTIKWAMQVGDQQ-IETVYIPED-DRATLCVSSQVGCA 157
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEPLHNVE 282
+ C FC T + G R+L+ AEI+ Q A +++ + V ITNVV MGMGEPL N+
Sbjct: 158 LACTFCSTAQQGFNRNLSVAEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEPLLNMN 217
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NVI A IM+ + S R+VT+STSG+VP L + + + ALA+SL+A DE+R+ ++
Sbjct: 218 NVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLHAPNDELRDELV 277
Query: 343 PINRKYKLGLLIETLRE--ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PIN+KY + +L++++ + E+ N+ KV EYVML VNDS D A +L +++ PCKI
Sbjct: 278 PINKKYNIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDSTDHAHQLAEVLKNTPCKI 337
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 338 NLIPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAACGQLA 390
>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UMN026]
gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|417587516|ref|ZP_12238285.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|419933201|ref|ZP_14450469.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|432354433|ref|ZP_19597704.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|432402782|ref|ZP_19645534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|432427048|ref|ZP_19669547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|432461514|ref|ZP_19703661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|432476738|ref|ZP_19718735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|432518616|ref|ZP_19755802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|432538739|ref|ZP_19775639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|432632278|ref|ZP_19868203.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|432641994|ref|ZP_19877826.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|432666943|ref|ZP_19902522.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|432775597|ref|ZP_20009866.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|432887494|ref|ZP_20101547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|432913734|ref|ZP_20119367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|433019580|ref|ZP_20207780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|433054161|ref|ZP_20241335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|433068807|ref|ZP_20255593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|433159562|ref|ZP_20344397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|433179352|ref|ZP_20363747.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
gi|254807179|sp|B7N6A5.1|RLMN_ECOLU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|345335546|gb|EGW67984.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|388414231|gb|EIL74197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|430874840|gb|ELB98392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|430925253|gb|ELC45926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|430954747|gb|ELC73602.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|430988335|gb|ELD04829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|431004556|gb|ELD19770.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|431050410|gb|ELD60160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|431068619|gb|ELD77093.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|431169856|gb|ELE70071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|431181257|gb|ELE81128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|431199769|gb|ELE98496.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|431317601|gb|ELG05379.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|431415843|gb|ELG98338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|431438999|gb|ELH20368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|431529888|gb|ELI06579.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|431569590|gb|ELI42532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|431582690|gb|ELI54702.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|431677054|gb|ELJ43136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|431700235|gb|ELJ65217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
Length = 384
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 209/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLR--EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R E N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|398841605|ref|ZP_10598816.1| 23S rRNA methyltransferase [Pseudomonas sp. GM102]
gi|398907354|ref|ZP_10653803.1| 23S rRNA methyltransferase [Pseudomonas sp. GM50]
gi|398107918|gb|EJL97908.1| 23S rRNA methyltransferase [Pseudomonas sp. GM102]
gi|398171720|gb|EJM59617.1| 23S rRNA methyltransferase [Pseudomonas sp. GM50]
Length = 382
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 200/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ + L DD D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDF-----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPATADRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|398997503|ref|ZP_10700326.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM21]
gi|398123901|gb|EJM13429.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM21]
Length = 380
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 200/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ + L DD D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDF-----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPATADRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|416052916|ref|ZP_11578551.1| hypothetical protein SC1083_1732 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|418464924|ref|ZP_13035863.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|347991708|gb|EGY33171.1| hypothetical protein SC1083_1732 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|359756879|gb|EHK91036.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 379
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + D + LNK ++ L AE +A + S+DGT K
Sbjct: 35 FRADQ-LVKWIYHFGEDNF----DNMTNLNKALREKLKTVAEIKAPEVAVEQRSADGTIK 89
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C FC T + G R+LT AEI+ Q
Sbjct: 90 WAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQV 147
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 148 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 207
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + ALA+SL+A DE+R+ I+P+N+KY + LI+++ L N+
Sbjct: 208 SGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANH 267
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 268 GKVTIEYVMLDHINDHVEHAHQLAAVLKNTPCKINLIPWNPFPQAPYAKSSNTRIDRFQK 327
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 328 TLMEYGLTVIVRKTRGDDIDAACGQLA 354
>gi|163757380|ref|ZP_02164469.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica
DFL-43]
gi|162284882|gb|EDQ35164.1| radical SAM enzyme, Cfr family protein [Hoeflea phototrophica
DFL-43]
Length = 410
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 186/333 (55%), Gaps = 26/333 (7%)
Query: 141 LWKRLY--GDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML- 197
LW LY G +A ++ ++KD + L H + + SSDGTRK L
Sbjct: 57 LWHWLYVRGSSDFA----DMHTISKDLRDKLDAHFSVARPEIVEEQISSDGTRKWLMRFP 112
Query: 198 ----DDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAV 253
+ +ETV IP GR T+C+SSQVGC + C FC+TG L R+LT EI+ Q +
Sbjct: 113 PRGAGRPVEVETVYIP-EEGRGTLCISSQVGCTLTCTFCHTGTQKLVRNLTPEEILAQLL 171
Query: 254 FARRLLS--------------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
AR L +E +TN+V MGMGEPL+N ENV KA I GL
Sbjct: 172 VARDRLGDFPHKDTPQGAIVPTEGRKVTNIVMMGMGEPLYNFENVKKALLIASDGDGLAL 231
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R++T+STSG+VP++ + E LA+SL+A DE+R+ ++PIN+KY L L++ R
Sbjct: 232 SRRRITLSTSGVVPEITRTGTEIGVMLAISLHAVRDELRDELVPINKKYPLKQLLDACRA 291
Query: 360 ELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDE 419
N ++ FEYVML GVNDS DAK L+ L++GIP KINLI FNP GS + + +
Sbjct: 292 YPGLSNARRITFEYVMLKGVNDSLSDAKELVRLLKGIPAKINLIPFNPWPGSAYECSDWD 351
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ F + + G +R RG D +AACGQL
Sbjct: 352 TIETFADFINANGYASPIRTPRGRDILAACGQL 384
>gi|456063410|ref|YP_007502380.1| radical SAM protein [beta proteobacterium CB]
gi|455440707|gb|AGG33645.1| radical SAM protein [beta proteobacterium CB]
Length = 397
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 193/340 (56%), Gaps = 26/340 (7%)
Query: 133 FRPGQALMLWKRLYG-DDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
FR Q LM W G DI +++ L K F+ L + AE +L + ++DGTR
Sbjct: 13 FRAKQ-LMQWIHQRGVSDI-----NDMSDLAKSFRATLLDKAEVLSLPVIKDEHAADGTR 66
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +E+V IP + R T+C+SSQ GCA+NC+FC TG G R+LTA EI+ Q
Sbjct: 67 KWLLNVGAGNAVESVFIPED-DRGTLCISSQAGCAVNCRFCSTGHQGFSRNLTAGEIIGQ 125
Query: 252 AVFARRLLSSEVGS------------------ITNVVFMGMGEPLHNVENVIKAANIMVH 293
FA LL ++ + I+NVV MGMGEPL N +NV+ A +M+
Sbjct: 126 LWFAEHLLRTDPNAVRRIEKYPTPGWEHTGRVISNVVLMGMGEPLLNYDNVVTALRLMLD 185
Query: 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353
++ S R+VTVSTSG+VP + + + ALAVSL+A D++R+ ++P+N+KY L L
Sbjct: 186 DRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDKLRDQLVPLNQKYPLREL 245
Query: 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF 413
+ L F + FEY ML GVNDS AK L+ L+ I CKINLI FNP S
Sbjct: 246 LAACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKELVRLLANIKCKINLIPFNPFPESGL 305
Query: 414 TPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
++ +++ F +IL AG +R +RGDD AACGQL
Sbjct: 306 KRSSAQRVHAFASILLDAGMVATVRKTRGDDIAAACGQLA 345
>gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
Length = 398
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q +M W Y D + TD +NK + L AE RA + + S+DGT K
Sbjct: 54 FRADQ-VMKWMYHYCYDDFEQMTD----INKVLRAKLQRVAEIRAPEVAEEQRSTDGTIK 108
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 109 WAIKVGDQQV-ETVYIP-EGDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 166
Query: 253 VFARRLLSS--EVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ S G+ ITNVV MGMGEPL N+ NV+ A +IM+ + G S R+VT+ST
Sbjct: 167 WRAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLST 226
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL--HFKNN 366
SG+VP L + + + ALA+SL+A TD++R+ I+PINRKY + + +R L N
Sbjct: 227 SGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANG 286
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
+V EYVML +NDS + A +L ++ PCKINLI +NP G+ + +++ ++ F
Sbjct: 287 GRVTVEYVMLDHINDSTEQAHQLAECLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSK 346
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L G T +R +RGDD AACGQL
Sbjct: 347 VLMEYGFTTIVRKTRGDDIDAACGQLA 373
>gi|424916434|ref|ZP_18339798.1| 23S rRNA m2A2503 methyltransferase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392852610|gb|EJB05131.1| 23S rRNA m2A2503 methyltransferase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 408
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 25 LIGLSREEMGAALRERGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTN----VAKDMREML 80
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 81 KQHFTIARPEIVEEQVSNDGTRKWLLRFPPRGAGRPVEIEAVYIP-EEGRGTLCISSQVG 139
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 140 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 199
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 200 MMGMGEPLYNFDAVKQALLIATDGDGLSLSRRRVTLSTSGVVPEIFRTGEEIGVMLAISL 259
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LIE + N ++ FEYVML VNDS +DAK LI
Sbjct: 260 HAVRDDLRDILVPINKKYPLKELIEACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 319
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 320 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 379
Query: 451 QL 452
QL
Sbjct: 380 QL 381
>gi|334364779|ref|ZP_08513759.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
gi|313159155|gb|EFR58530.1| 23S rRNA m2A2503 methyltransferase [Alistipes sp. HGB5]
Length = 379
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/275 (44%), Positives = 166/275 (60%), Gaps = 7/275 (2%)
Query: 183 ILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
I S+DGT+K L+ G IE+ IP + R T+CVSSQ GC M C+FC TGR GL+
Sbjct: 108 ITESADGTKKYLYRTQQGAWIESAYIP-DGERATLCVSSQAGCRMGCKFCATGRQGLQHS 166
Query: 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
LT AEI+ Q V E S+TNVVFMGMGEPL N +NV++A IM E G +SP
Sbjct: 167 LTTAEILNQIVSL-----PERDSLTNVVFMGMGEPLDNTDNVLRALEIMTSEWGFGWSPT 221
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
++T+ST+G+ P+L++FL+ + LAVSL+ E R IMP+ R + + + LR
Sbjct: 222 RITLSTAGVAPELQRFLDATKVHLAVSLHNPFHEERAAIMPVERAWPIAEVAAILR-RYD 280
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
F + +V FEY++++G+NDS + L L+ GI C+INLI F+ GS F DE MI
Sbjct: 281 FTHQRRVSFEYIVMSGLNDSPRHIRELCRLLDGIKCRINLIRFHKIPGSPFFSPDDEAMI 340
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGA 457
FR+ L G +R SRG+D AACG L A
Sbjct: 341 RFRDTLTAKGIQTTIRASRGEDIQAACGLLSTAAA 375
>gi|417106209|ref|ZP_11962141.1| hypothetical protein RHECNPAF_44600102 [Rhizobium etli CNPAF512]
gi|327190218|gb|EGE57323.1| hypothetical protein RHECNPAF_44600102 [Rhizobium etli CNPAF512]
Length = 411
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 28 LIGLSREEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTN----VAKDMREML 83
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 84 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIP-EEGRGTLCISSQVG 142
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 143 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 202
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 203 MMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISL 262
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LI+ + N ++ FEYVML VNDS +DAK LI
Sbjct: 263 HAVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 322
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 323 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 382
Query: 451 QL 452
QL
Sbjct: 383 QL 384
>gi|291287807|ref|YP_003504623.1| Cfr family radical SAM protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884967|gb|ADD68667.1| radical SAM enzyme, Cfr family [Denitrovibrio acetiphilus DSM
12809]
Length = 357
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 207/344 (60%), Gaps = 11/344 (3%)
Query: 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLY--GDDIWAHCTDELEGLNKDFKKMLSE 171
+ L M+ EL+ +V S + +A+ + K +Y G + A TD L+ ++ L
Sbjct: 5 IYLDSMNKFELENFVISQGMQKFRAIQIHKWVYRRGAESVAEMTD----LSIADREKLLG 60
Query: 172 HAEFRALSLKDILTSS-DGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQ 230
A+F +++ D+ S+ DG+ K LF L+DG IE VV+ R R T C+SSQVGC M C
Sbjct: 61 MAKFTVMNVADVRKSAMDGSVKFLFSLEDGETIEAVVLNDGR-RLTACISSQVGCRMGCA 119
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290
FC T +MGL+R+LT EI++Q L+SE + N+VFMGMGEPL N++NV A N+
Sbjct: 120 FCSTAKMGLRRNLTMGEIIKQVKRLNEYLASEGTKLNNLVFMGMGEPLDNLDNVKNAINV 179
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQ-FLNESNCALAVSLNATTDEVRNWIMPINRKYK 349
++ + G FS +K+T+ST GL +L++ F ++ LAVS+NA E R +MP++ KY
Sbjct: 180 LLDDDGYGFSHKKITLSTCGLTDRLEELFAMDTPVNLAVSVNAADQETRKGLMPVSNKYP 239
Query: 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI-PCKINLISFNPH 408
L L++ L+ +L + + EYV+L GVND+ DDA++L L++G+ KINLI++N
Sbjct: 240 LSGLMDVLK-KLPLQKRKSITIEYVLLRGVNDTLDDARKLAKLLRGLDKVKINLITYNSG 298
Query: 409 CGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ + P +++ ++F+ L VF+R S G D ACGQL
Sbjct: 299 GDAGYLPPSEKDTLKFQEYLISNKIGVFIRKSLGRDIEGACGQL 342
>gi|424038688|ref|ZP_17777220.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-02]
gi|408893832|gb|EKM30909.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-02]
Length = 375
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDDF----DSMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYDHTVTVRKTRGDDIDAACGQL 347
>gi|422023278|ref|ZP_16369783.1| ribosomal RNA large subunit methyltransferase N [Providencia
sneebia DSM 19967]
gi|414094046|gb|EKT55716.1| ribosomal RNA large subunit methyltransferase N [Providencia
sneebia DSM 19967]
Length = 384
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 196/330 (59%), Gaps = 19/330 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKMLSEHAEFRALSLKDILTSSDG 189
FR Q +M W I+ +C D+ + +NK + L E AE RA + + S+DG
Sbjct: 40 FRADQ-VMKW-------IYHYCYDDFDQMTDINKALRAKLKEVAEIRAPEVSEEQRSADG 91
Query: 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIV 249
T K + G +ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+
Sbjct: 92 TIKWAITVG-GQQVETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEII 149
Query: 250 EQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVT 305
Q A +++ S S ITNVV MGMGEPL N+ NV+ A IM+ + G S R+VT
Sbjct: 150 GQVWRAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVT 209
Query: 306 VSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK- 364
+STSG+VP L + + + ALA+SL+A TDE+R+ IMPIN+KY + + ++R L
Sbjct: 210 ISTSGVVPALDKLGDMIDVALAISLHAPTDEIRDDIMPINKKYNIETFLGSVRRYLSKSN 269
Query: 365 -NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
N+ +V EYVML +NDS + A +L ++ P KINLI +NP G+ + +++ ++
Sbjct: 270 ANSGRVTVEYVMLDHINDSTEHAHQLAECLKDTPSKINLIPWNPFPGAPYGRSSNSRIDR 329
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
F +L G T +R +RGDD AACGQL
Sbjct: 330 FSKVLMEYGFTTIVRKTRGDDIDAACGQLA 359
>gi|389704826|ref|ZP_10185930.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
gi|388611070|gb|EIM40179.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
Length = 411
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 206/362 (56%), Gaps = 23/362 (6%)
Query: 109 KKGSRVLLKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDF 165
K +V L GMS +++++ FR GQ + + + D E+ ++
Sbjct: 26 KAVEKVNLLGMSRPQMEKFFEDMGEKKFRAGQVMKWIHQFFVTDFA-----EMTNISGKL 80
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGL--VIETVVIPCNR---GRTTVCVS 220
++ L + E +A + S DGTRK +F + DG ++ETV+IP R T+C+S
Sbjct: 81 REKLEKICEIKAPEVVHKNYSKDGTRKWVFRVGDGEGSLVETVLIPAEDKTGSRKTLCIS 140
Query: 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------GSITNVVFMGM 274
SQVGCA++C FC TG+ G +R L+ AEI+ Q A +V S+TNVV MGM
Sbjct: 141 SQVGCALDCSFCSTGKQGFQRDLSQAEIIGQLWMANYSYMEDVPVAERERSVTNVVMMGM 200
Query: 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATT 334
GEPL N + V+ + IM+ + S R+VT+STSG+VP++ Q + + ALA+SL+A
Sbjct: 201 GEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPN 260
Query: 335 DEVRNWIMPINRKYKLGLLIETLREELHFKNNYK----VLFEYVMLAGVNDSFDDAKRLI 390
DE+RN ++PIN+KY L LI + + N V EYVML GVND + A+++I
Sbjct: 261 DELRNELVPINKKYPLEHLIAACQRYITKDGNESARKHVTIEYVMLDGVNDKPEHAQQMI 320
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++ +P KINLI FNP + + ++ ++I F+ L+ AG +R +RGDD AACG
Sbjct: 321 KLLKNLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACG 380
Query: 451 QL 452
QL
Sbjct: 381 QL 382
>gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
Length = 391
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/358 (38%), Positives = 209/358 (58%), Gaps = 14/358 (3%)
Query: 104 INVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGL 161
++V + ++ L ++ +++++ + +P +A L+ W +G+D + D + +
Sbjct: 15 VDVSAEPAKKINLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDDF----DNMTNI 70
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L + AE +A + S+DGT K + D V ETV IP R T+CVSS
Sbjct: 71 NKKLRDKLKQVAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP-EADRATLCVSS 128
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSITNVVFMGMGEP 277
QVGCA+ C FC T + G R+LT +EI+ Q A +++ + V ITNVV MGMGEP
Sbjct: 129 QVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPITNVVMMGMGEP 188
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L NV NV+ A IM+ + S R+VT+STSG+VP L + + ALA+SL+A DE+
Sbjct: 189 LLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDEL 248
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + LI+++ L N+ KV EYVML VNDS + A +L +++
Sbjct: 249 RDEIVPINKKYNIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSVEHAHQLAQVLKN 308
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
P KINLI +NP + + +++ ++ F+ L G TV +R +RGDD AACGQL
Sbjct: 309 TPSKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLA 366
>gi|407363609|ref|ZP_11110141.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
mandelii JR-1]
Length = 380
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 200/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ + L DD D + ++K + L
Sbjct: 10 LLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDF-----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPATADRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
Length = 384
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 208/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++ + + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMRVFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|452126159|ref|ZP_21938742.1| radical SAM superfamily protein 2 [Bordetella holmesii F627]
gi|452129527|ref|ZP_21942102.1| radical SAM superfamily protein 2 [Bordetella holmesii H558]
gi|451921254|gb|EMD71399.1| radical SAM superfamily protein 2 [Bordetella holmesii F627]
gi|451923162|gb|EMD73304.1| radical SAM superfamily protein 2 [Bordetella holmesii H558]
Length = 382
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/353 (39%), Positives = 193/353 (54%), Gaps = 20/353 (5%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA 173
L GM L V +P +A L W G D + D + L +DF+ L+E
Sbjct: 9 LLGMDAKALADLVGQWGGKPFRARQLQRWIHQRGVDSF----DAMSDLARDFRAQLTERC 64
Query: 174 EFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCY 233
AL + S+DGTRK LF + G IETV IP + R T+C+SSQ GC +NC+FC
Sbjct: 65 VIEALPVNIEQRSADGTRKWLFDVGQGNAIETVFIPED-DRGTLCISSQAGCVVNCRFCS 123
Query: 234 TGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-------------ITNVVFMGMGEPLHN 280
TG G R+L +EI+ Q +A+R+L ++VGS I+NVV MGMGEPL N
Sbjct: 124 TGHQGFNRNLKTSEIIGQLWWAKRVLEADVGSARLAQASGEDTRVISNVVMMGMGEPLLN 183
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ V+ A +M+ + G S R+VTVSTSG+VP + + + ALAVSL+A D +R+
Sbjct: 184 YDQVLPALRMMLDDNGYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDD 243
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
++P+N+KY L L+ L + FEY ML G+ND+ A+ LI L + + CK+
Sbjct: 244 LVPLNKKYPLKELLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVRCKL 303
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 304 NLIPFNPFPASGLKRSPAPRVRVFAQRLMDAGIITTVRKTRGDDIDAACGQLA 356
>gi|190893778|ref|YP_001980320.1| hypothetical protein RHECIAT_CH0004213 [Rhizobium etli CIAT 652]
gi|254807196|sp|B3PQY8.1|RLMN_RHIE6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|190699057|gb|ACE93142.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 409
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 26 LIGLSRQEMAAALREKGVAEKQIKMRVAQLWNWIYVRGVSDFDHMTN----VAKDMREML 81
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIP-EEGRGTLCISSQVG 140
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LI+ + N ++ FEYVML VNDS +DAK LI
Sbjct: 261 HAVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380
Query: 451 QL 452
QL
Sbjct: 381 QL 382
>gi|416066265|ref|ZP_11581932.1| hypothetical protein D18P1_0025 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002861|gb|EGY43524.1| hypothetical protein D18P1_0025 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 379
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W +G+D + D + LNK ++ L AE +A + S+DGT K
Sbjct: 35 FRADQ-LVKWIYHFGEDNF----DNMTNLNKQLREKLKTMAEIKAPEVAVEQRSADGTIK 89
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ D V ETV IP R T+CVSSQVGCA+ C FC T + G R+LT AEI+ Q
Sbjct: 90 WAMQVGDQQV-ETVYIP-EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVAEIIGQV 147
Query: 253 VFARRLLS----SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVST 308
A +++ + V ITNVV MGMGEPL NV NV+ A IM+ + S R+VT+ST
Sbjct: 148 WRASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLST 207
Query: 309 SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NN 366
SG+VP L + ALA+SL+A DE+R+ I+P+N+KY + LI+++ L N+
Sbjct: 208 SGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANH 267
Query: 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRN 426
KV EYVML +ND + A +L +++ PCKINLI +NP + + +++ ++ F+
Sbjct: 268 GKVTIEYVMLDHINDHVEHAHQLAEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQK 327
Query: 427 ILAGAGCTVFLRLSRGDDQMAACGQLG 453
L G TV +R +RGDD AACGQL
Sbjct: 328 TLMEYGLTVIVRKTRGDDIDAACGQLA 354
>gi|424032150|ref|ZP_17771570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-01]
gi|424045068|ref|ZP_17782635.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-03]
gi|408876155|gb|EKM15284.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-01]
gi|408886922|gb|EKM25572.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-03]
Length = 375
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDDF----DNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYDHTVTVRKTRGDDIDAACGQL 347
>gi|323491629|ref|ZP_08096808.1| ribosomal RNA large subunit methyltransferase N [Vibrio
brasiliensis LMG 20546]
gi|323314205|gb|EGA67290.1| ribosomal RNA large subunit methyltransferase N [Vibrio
brasiliensis LMG 20546]
Length = 375
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D++ +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDNF----DDMTNINKKLREKLQHRCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITN+V MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLQKETGRRPITNIVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. Sakai]
gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
O157:H7 str. EC4024]
gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209400754|ref|YP_002271987.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4115]
gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. TW14359]
gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|387507882|ref|YP_006160138.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|387883711|ref|YP_006314013.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|416310003|ref|ZP_11656202.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|416321670|ref|ZP_11663518.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|416329944|ref|ZP_11669071.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|416775881|ref|ZP_11874617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|416809527|ref|ZP_11889129.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97]
gi|416820198|ref|ZP_11893687.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|416831018|ref|ZP_11898977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|419046194|ref|ZP_13593131.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|419052228|ref|ZP_13599099.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|419058263|ref|ZP_13605068.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|419063730|ref|ZP_13610457.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|419070628|ref|ZP_13616249.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|419081709|ref|ZP_13627157.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|419087564|ref|ZP_13632920.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|419093455|ref|ZP_13638740.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|419099354|ref|ZP_13644551.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|419105081|ref|ZP_13650210.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|419110541|ref|ZP_13655597.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|419115900|ref|ZP_13660916.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|419121471|ref|ZP_13666427.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|419126965|ref|ZP_13671849.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|419132531|ref|ZP_13677368.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|419137567|ref|ZP_13682362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|420270560|ref|ZP_14772918.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|420276519|ref|ZP_14778803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|420287930|ref|ZP_14790116.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|420293547|ref|ZP_14795663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|420299389|ref|ZP_14801438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|420305342|ref|ZP_14807336.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|420310397|ref|ZP_14812330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|420316262|ref|ZP_14818137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|421813504|ref|ZP_16249222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|421819319|ref|ZP_16254815.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|421825313|ref|ZP_16260671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|421832046|ref|ZP_16267333.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|423726228|ref|ZP_17700289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|424078605|ref|ZP_17815596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|424085070|ref|ZP_17821573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|424091479|ref|ZP_17827424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|424098101|ref|ZP_17833423.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|424104334|ref|ZP_17839115.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|424111006|ref|ZP_17845250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|424116945|ref|ZP_17850793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|424123127|ref|ZP_17856458.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|424129291|ref|ZP_17862207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|424135565|ref|ZP_17868037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|424142130|ref|ZP_17874026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|424148560|ref|ZP_17879944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|424154377|ref|ZP_17885341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|424250489|ref|ZP_17890904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|424328684|ref|ZP_17896816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|424450811|ref|ZP_17902526.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|424457011|ref|ZP_17908157.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|424463448|ref|ZP_17913896.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|424469788|ref|ZP_17919621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|424476313|ref|ZP_17925638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|424482066|ref|ZP_17931056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|424488226|ref|ZP_17936803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|424494790|ref|ZP_17942525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|424501596|ref|ZP_17948502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|424507843|ref|ZP_17954248.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|424515164|ref|ZP_17959858.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|424521384|ref|ZP_17965521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|424527277|ref|ZP_17971002.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|424533425|ref|ZP_17976784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|424539525|ref|ZP_17982477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|424545576|ref|ZP_17987991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|424551816|ref|ZP_17993684.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|424558002|ref|ZP_17999428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|424564348|ref|ZP_18005358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|424570481|ref|ZP_18011044.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|424576628|ref|ZP_18016712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|424582467|ref|ZP_18022121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|425099174|ref|ZP_18501913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|425105233|ref|ZP_18507559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|425111248|ref|ZP_18513175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|425127173|ref|ZP_18528350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|425132906|ref|ZP_18533763.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|425139413|ref|ZP_18539802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|425145207|ref|ZP_18545209.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|425151316|ref|ZP_18550937.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|425157179|ref|ZP_18556452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|425163538|ref|ZP_18562433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|425169278|ref|ZP_18567762.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|425175343|ref|ZP_18573472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|425181370|ref|ZP_18579076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|425187640|ref|ZP_18584923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|425194412|ref|ZP_18591191.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|425200888|ref|ZP_18597106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|425207270|ref|ZP_18603079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|425213029|ref|ZP_18608439.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|425219149|ref|ZP_18614126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|425225699|ref|ZP_18620176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|425231963|ref|ZP_18626012.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|425237882|ref|ZP_18631611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|425244097|ref|ZP_18637415.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|425250261|ref|ZP_18643207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|425256090|ref|ZP_18648618.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|425262350|ref|ZP_18654367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|425295781|ref|ZP_18685992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|425312487|ref|ZP_18701680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|425318481|ref|ZP_18707279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|425324549|ref|ZP_18712927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|425330914|ref|ZP_18718779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|425337090|ref|ZP_18724472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|425343432|ref|ZP_18730331.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|425349241|ref|ZP_18735718.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|425355535|ref|ZP_18741610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|425361498|ref|ZP_18747155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|425367680|ref|ZP_18752850.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|425374030|ref|ZP_18758680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|425386919|ref|ZP_18770485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|425393606|ref|ZP_18776721.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|425399705|ref|ZP_18782419.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|425405794|ref|ZP_18788025.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|425412184|ref|ZP_18793955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|425418505|ref|ZP_18799784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|425429766|ref|ZP_18810386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|428948186|ref|ZP_19020480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|428954282|ref|ZP_19026091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|428960247|ref|ZP_19031565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|428966871|ref|ZP_19037600.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|428972560|ref|ZP_19042911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|428979099|ref|ZP_19048935.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|428984910|ref|ZP_19054316.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|428990995|ref|ZP_19059996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|428996861|ref|ZP_19065470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|429003107|ref|ZP_19071244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|429009192|ref|ZP_19076719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|429015721|ref|ZP_19082626.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|429021557|ref|ZP_19088092.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|429027654|ref|ZP_19093669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|429033842|ref|ZP_19099378.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|429039900|ref|ZP_19105021.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|429045761|ref|ZP_19110487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|429051230|ref|ZP_19115801.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|429056604|ref|ZP_19120930.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|429062101|ref|ZP_19126128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|429068376|ref|ZP_19131854.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|429074324|ref|ZP_19137580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|429079518|ref|ZP_19142658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429827534|ref|ZP_19358588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429833895|ref|ZP_19364257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444926069|ref|ZP_21245372.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444931779|ref|ZP_21250824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444937229|ref|ZP_21256010.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444942860|ref|ZP_21261382.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444948272|ref|ZP_21266587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444953888|ref|ZP_21271988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444959413|ref|ZP_21277270.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444966218|ref|ZP_21283760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444970544|ref|ZP_21287911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444975832|ref|ZP_21292960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444981215|ref|ZP_21298131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444986610|ref|ZP_21303395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444991925|ref|ZP_21308572.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444997231|ref|ZP_21313733.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|445002808|ref|ZP_21319201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|445008246|ref|ZP_21324489.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|445013341|ref|ZP_21329452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|445019206|ref|ZP_21335175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|445024662|ref|ZP_21340490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|445029997|ref|ZP_21345676.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|445035465|ref|ZP_21351001.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|445041089|ref|ZP_21356466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|445046312|ref|ZP_21361567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|445051831|ref|ZP_21366882.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|445057603|ref|ZP_21372465.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
gi|452971706|ref|ZP_21969933.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4009]
gi|205829862|sp|Q8XAA4.3|RLMN_ECO57 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807175|sp|B5Z0Y6.1|RLMN_ECO5E RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4115]
gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|374359876|gb|AEZ41583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|377892857|gb|EHU57297.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|377893024|gb|EHU57463.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|377904850|gb|EHU69128.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|377909370|gb|EHU73572.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|377911602|gb|EHU75771.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|377926339|gb|EHU90274.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|377929819|gb|EHU93707.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|377941470|gb|EHV05210.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|377941897|gb|EHV05634.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|377947564|gb|EHV11231.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|377956797|gb|EHV20340.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|377960009|gb|EHV23500.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|377966695|gb|EHV30106.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|377974021|gb|EHV37350.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|377975494|gb|EHV38815.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|377983984|gb|EHV47225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|386797169|gb|AFJ30203.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|390641137|gb|EIN20569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|390642796|gb|EIN22185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|390643584|gb|EIN22923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|390659994|gb|EIN37731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|390661281|gb|EIN38940.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|390663150|gb|EIN40675.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|390676911|gb|EIN52989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|390680262|gb|EIN56117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|390683370|gb|EIN59066.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|390695826|gb|EIN70337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|390700278|gb|EIN74589.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|390700773|gb|EIN75054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|390714072|gb|EIN86986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|390722140|gb|EIN94829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|390723591|gb|EIN96179.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|390726602|gb|EIN99040.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|390741778|gb|EIO12832.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|390742188|gb|EIO13204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|390744873|gb|EIO15714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|390757929|gb|EIO27399.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|390766958|gb|EIO36067.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|390768085|gb|EIO37133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|390768492|gb|EIO37523.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|390789669|gb|EIO57118.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|390789917|gb|EIO57346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|390795870|gb|EIO63147.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|390805318|gb|EIO72265.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|390807084|gb|EIO73986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|390815647|gb|EIO82175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|390825447|gb|EIO91366.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|390830043|gb|EIO95620.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|390830323|gb|EIO95870.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|390845594|gb|EIP09222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|390845920|gb|EIP09540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|390850195|gb|EIP13583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|390860947|gb|EIP23229.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|390864877|gb|EIP26946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|390870141|gb|EIP31700.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|390878151|gb|EIP39026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|390883252|gb|EIP43694.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|390892968|gb|EIP52538.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|390895493|gb|EIP54958.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|390899676|gb|EIP58912.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|390907626|gb|EIP66479.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|390918711|gb|EIP77100.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|390919983|gb|EIP78303.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|408064418|gb|EKG98900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|408066327|gb|EKH00786.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|408069884|gb|EKH04266.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|408079126|gb|EKH13254.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|408082592|gb|EKH16558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|408091003|gb|EKH24240.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|408097395|gb|EKH30294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|408103694|gb|EKH36024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|408108272|gb|EKH40289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|408114578|gb|EKH46104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|408120612|gb|EKH51588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|408127157|gb|EKH57661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|408137512|gb|EKH67213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|408139658|gb|EKH69255.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|408145800|gb|EKH74950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|408154833|gb|EKH83163.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|408159595|gb|EKH87648.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|408163444|gb|EKH91310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|408173198|gb|EKI00244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|408179707|gb|EKI06361.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|408217248|gb|EKI41524.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|408226812|gb|EKI50436.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|408238066|gb|EKI60901.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|408241903|gb|EKI64508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|408246285|gb|EKI68583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|408255119|gb|EKI76582.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|408258550|gb|EKI79810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|408265069|gb|EKI85824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|408273788|gb|EKI93828.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|408276720|gb|EKI96604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|408285847|gb|EKJ04830.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|408290654|gb|EKJ09358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|408307381|gb|EKJ24722.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|408307662|gb|EKJ24991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|408318662|gb|EKJ34865.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|408324647|gb|EKJ40573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|408325783|gb|EKJ41628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|408336060|gb|EKJ50859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|408345977|gb|EKJ60288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|408549146|gb|EKK26508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|408549414|gb|EKK26775.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|408550426|gb|EKK27755.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|408568610|gb|EKK44639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|408578467|gb|EKK53985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|408580912|gb|EKK56285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|408590986|gb|EKK65438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|408596065|gb|EKK70257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|408600699|gb|EKK74532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|408612240|gb|EKK85585.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|427204361|gb|EKV74638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|427206414|gb|EKV76627.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|427208158|gb|EKV78295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|427220501|gb|EKV89421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|427223956|gb|EKV92681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|427227705|gb|EKV96236.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|427241486|gb|EKW08917.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|427242015|gb|EKW09434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|427245645|gb|EKW12926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|427260560|gb|EKW26543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|427261065|gb|EKW27015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|427264277|gb|EKW29967.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|427276138|gb|EKW40717.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|427278860|gb|EKW43315.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|427282992|gb|EKW47230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|427291472|gb|EKW54874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|427298976|gb|EKW61966.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|427300130|gb|EKW63082.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|427311965|gb|EKW74135.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|427315043|gb|EKW77058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|427319322|gb|EKW81144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|427327390|gb|EKW88779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|427328850|gb|EKW90201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429253334|gb|EKY37824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429254905|gb|EKY39262.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444537779|gb|ELV17688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444539340|gb|ELV19106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444547149|gb|ELV25777.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444556973|gb|ELV34338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444557764|gb|ELV35089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444563079|gb|ELV40114.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444571589|gb|ELV48065.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444572591|gb|ELV49013.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444578977|gb|ELV54998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444592927|gb|ELV68165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444593198|gb|ELV68429.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444594770|gb|ELV69925.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444606370|gb|ELV80989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|444606775|gb|ELV81381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444615314|gb|ELV89520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|444622836|gb|ELV96780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|444623680|gb|ELV97597.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|444629354|gb|ELW03058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|444638195|gb|ELW11546.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|444640520|gb|ELW13779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|444644880|gb|ELW17975.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|444653968|gb|ELW26663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|444659371|gb|ELW31789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|444663956|gb|ELW36160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|444669407|gb|ELW41390.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
Length = 384
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 208/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP + + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|392950836|ref|ZP_10316391.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
gi|391859798|gb|EIT70326.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
Length = 441
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 200/389 (51%), Gaps = 53/389 (13%)
Query: 113 RVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
R+ L G+ +L+ +P +A +M W G D + D + ++KD + +
Sbjct: 29 RINLFGLDREQLRAVFADMGEKPYRADQIMQWIYRRGVDSF----DAMSNVSKDLRTRMQ 84
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIP--------------------- 209
E E R L S DGTRK + LD G IETV IP
Sbjct: 85 ERFEIRHPELLAEQLSQDGTRKWVLKLDGGNAIETVFIPEGDFESRLERVAPQRFKPSVS 144
Query: 210 ----------------------CNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAE 247
R R T+C+SSQVGCAM+C FC T + GL R+LT AE
Sbjct: 145 DESDASSAAESGTTRSAVSDKSDKRYRGTLCISSQVGCAMDCSFCSTAQQGLNRNLTTAE 204
Query: 248 IVEQAVFARRLLSSEVGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
++ Q FA + L + + I+NVVFMGMGEPL N V+ A I+ + G S R+V
Sbjct: 205 VIAQVWFAAKTLGGDFQNERVISNVVFMGMGEPLANYGQVMPAIGILQDDFGFGLSKRRV 264
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
TVSTSGLVP + + + + ALAVSL+A DE+RN ++PINRKY + L+ R K
Sbjct: 265 TVSTSGLVPFMDRLRADCDTALAVSLHAPNDELRNRLVPINRKYPIAELMAACRRYTAGK 324
Query: 365 N-NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
+++EYVML GVND+ + A++L L+ G+P K+NLI FNP +Q+ + E +
Sbjct: 325 ERKMHIVYEYVMLDGVNDAPEHARQLAKLLAGMPAKVNLIPFNPFPEAQYKRSKPEAIKR 384
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQL 452
F +IL R +RGDD AACGQL
Sbjct: 385 FADILREKHIMTTTRRTRGDDIDAACGQL 413
>gi|416892165|ref|ZP_11923598.1| hypothetical protein ATCC33389_0690 [Aggregatibacter aphrophilus
ATCC 33389]
gi|347815034|gb|EGY31677.1| hypothetical protein ATCC33389_0690 [Aggregatibacter aphrophilus
ATCC 33389]
Length = 384
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 207/369 (56%), Gaps = 17/369 (4%)
Query: 91 IEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDI 150
+E ++A G D + KK + + L E + FR Q L+ W +G+D
Sbjct: 2 LEQPIANAAGAD----VAKKVNLMNLTRAQMREFFAELGEKPFRADQ-LVKWIYHFGEDN 56
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPC 210
+ D + LNK ++ L AE +A + S+DGT K + D V ETV IP
Sbjct: 57 F----DNMTNLNKKLREKLKSVAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP- 110
Query: 211 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSI 266
R T+CVSSQVGCA+ C FC T + G R+LT +EI+ Q A +++ + V I
Sbjct: 111 EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPI 170
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
TNVV MGMGEPL NV NV+ A IM+ + S R+VT+STSG+VP L + AL
Sbjct: 171 TNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVAL 230
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFD 384
A+SL+A DE+R+ I+P+N+KY + LI+++ L N+ KV EYVML VND +
Sbjct: 231 AISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLNHVNDHVE 290
Query: 385 DAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444
A +L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 291 HAHQLAEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDD 350
Query: 445 QMAACGQLG 453
AACGQL
Sbjct: 351 IDAACGQLA 359
>gi|309782324|ref|ZP_07677051.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
gi|404378016|ref|ZP_10983116.1| ribosomal RNA large subunit methyltransferase N [Ralstonia sp.
5_2_56FAA]
gi|308918942|gb|EFP64612.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
gi|348615947|gb|EGY65455.1| ribosomal RNA large subunit methyltransferase N [Ralstonia sp.
5_2_56FAA]
Length = 383
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 186/329 (56%), Gaps = 13/329 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
+FR Q L W G + TD L K ++ L+ A +A ++ SSDGTR
Sbjct: 26 SFRAKQ-LQRWIHQSGASDFGEMTD----LAKSLREKLATRANIQAPAVITDHLSSDGTR 80
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K L + G +ETV IP R T+CVSSQ GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 81 KWLVDVGQGNAVETVYIP-EETRGTLCVSSQAGCAVNCRFCSTGKQGFSRNLSTGEIIGQ 139
Query: 252 AVFARRLLSSEVGS-------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV 304
A + ++G ITNVV MGMGEPL N + V+ A +M+ + S R+V
Sbjct: 140 LWMAEFAMRKQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVPALALMLDDNAYGLSRRRV 199
Query: 305 TVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364
TVSTSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ L F
Sbjct: 200 TVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNKKYPLAELMAACCRYLEFA 259
Query: 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424
+ FEY ML GVND+ + A+ L+ +V +PCK NLI FNP S + +E++ F
Sbjct: 260 PRDFITFEYCMLDGVNDTVEHARELLRVVADVPCKFNLIPFNPFPESGLKRSNNEQIRRF 319
Query: 425 RNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+L AG +R +RGDD AACGQL
Sbjct: 320 SQVLLDAGIVTTIRKTRGDDIDAACGQLA 348
>gi|146283364|ref|YP_001173517.1| radical SAM protein [Pseudomonas stutzeri A1501]
gi|145571569|gb|ABP80675.1| radical SAM enzyme, Cfr family [Pseudomonas stutzeri A1501]
Length = 347
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 187/318 (58%), Gaps = 10/318 (3%)
Query: 140 MLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDD 199
M W +G D + D + L K ++ L AE R + SSDGTRK + +
Sbjct: 1 MKWIHHFGVDDF----DAMSNLGKALREKLKACAEIRGPEIVSEDISSDGTRKWVVRVAS 56
Query: 200 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL 259
G +ETV IP GR T+CVSSQ GCA++C FC TG+ G +LTAAE++ Q A +
Sbjct: 57 GSCVETVYIP-QGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSF 115
Query: 260 SSEVG----SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 315
+ +ITNVV MGMGEPL N +NV+ A IM+ + G S RKVT+STSG+VP +
Sbjct: 116 GTVPAKIDRAITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMI 175
Query: 316 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL-FEYV 374
+ + +LA+SL+A + +R+ ++PIN+KY L +L+ + + +VL EY
Sbjct: 176 DELAKVIDVSLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYT 235
Query: 375 MLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCT 434
+L GVND + A+++I L+ IPCKINLI FNP S + ++ + F++IL G
Sbjct: 236 LLKGVNDQPEHAEQMIALLADIPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKGGHN 295
Query: 435 VFLRLSRGDDQMAACGQL 452
V +R +RG+D AACGQL
Sbjct: 296 VTVRTTRGEDIDAACGQL 313
>gi|429332403|ref|ZP_19213128.1| radical SAM protein [Pseudomonas putida CSV86]
gi|428762902|gb|EKX85092.1| radical SAM protein [Pseudomonas putida CSV86]
Length = 380
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/345 (38%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ +M W +G D + D + + K ++ L
Sbjct: 10 LLGLTQPEMEKFFDSIGEKRFRAGQ-VMKWIHHFGVDDF----DAMTNVGKALREKLKNC 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEIRGPEVVSEDISADGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSI----TNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S +I TNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNELVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +++++ + +VL EY +L VND + AK + L++ +PCKINLI FNP
Sbjct: 244 PLKVVLDSCMRYMSELGEKRVLTIEYTLLKDVNDQLEHAKEMAELLKDVPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ + AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDYMHNAGYNVTVRTTRGEDIDAACGQL 348
>gi|422337012|ref|ZP_16417984.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
aphrophilus F0387]
gi|353345564|gb|EHB89855.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
aphrophilus F0387]
Length = 384
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 207/369 (56%), Gaps = 17/369 (4%)
Query: 91 IEDYCSDAGGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDI 150
+E ++A G D + KK + + L E + FR Q L+ W +G+D
Sbjct: 2 LEQPIANAAGAD----VAKKVNLMNLTRAQMREFFAELGEKPFRADQ-LVKWIYHFGEDN 56
Query: 151 WAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPC 210
+ D + LNK ++ L AE +A + S+DGT K + D V ETV IP
Sbjct: 57 F----DNMTNLNKKLREKLKSVAEIKAPEVAVEQRSADGTIKWAMQVGDQQV-ETVYIP- 110
Query: 211 NRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----SEVGSI 266
R T+CVSSQVGCA+ C FC T + G R+LT +EI+ Q A +++ + V I
Sbjct: 111 EADRATLCVSSQVGCALACTFCSTAQQGFNRNLTVSEIIGQVWRASKIIGNFGVTGVRPI 170
Query: 267 TNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCAL 326
TNVV MGMGEPL NV NV+ A IM+ + S R+VT+STSG+VP L + AL
Sbjct: 171 TNVVMMGMGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVAL 230
Query: 327 AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFD 384
A+SL+A DE+R+ I+P+N+KY + LI+++ L N+ KV EYVML VND +
Sbjct: 231 AISLHAPNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVE 290
Query: 385 DAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444
A +L +++ PCKINLI +NP + + +++ ++ F+ L G TV +R +RGDD
Sbjct: 291 HAHQLAEVLKNTPCKINLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDD 350
Query: 445 QMAACGQLG 453
AACGQL
Sbjct: 351 IDAACGQLA 359
>gi|337265512|ref|YP_004609567.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum
WSM2075]
gi|336025822|gb|AEH85473.1| radical SAM enzyme, Cfr family [Mesorhizobium opportunistum
WSM2075]
Length = 466
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 203/381 (53%), Gaps = 33/381 (8%)
Query: 99 GGGDNINVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQ-----ALMLWKRLYGDDIWAH 153
G D + + L G++ EL + + + P + A LW +Y
Sbjct: 66 GARDALRARASSAEKPSLIGLTRAELGEALVASGIVPERQAKMRAQQLWHWMY-----VR 120
Query: 154 CTDELEGL---NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIET 205
+ G+ +KD + L +H + + S+DGTRK LF + IET
Sbjct: 121 GVSDFAGMFNISKDLRAELDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIET 180
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS----- 260
V IP GR T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 181 VYIP-EEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDR 239
Query: 261 ---------SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL 311
+E ++N+V MGMGEPL+N E V KA I GL S R++T+STSG+
Sbjct: 240 DTPDGAIVPAEGRKVSNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGV 299
Query: 312 VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371
VP++ + E LA+SL+AT D++R+ ++PIN+KY L LI R N ++ F
Sbjct: 300 VPEIFRTGEEIGVMLAISLHATNDDLRDLLVPINKKYPLKDLIAACRAYPGLSNARRITF 359
Query: 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431
EYVML VNDS +DAK LI L++GIP KINLI FNP G+ + + E + +F + + A
Sbjct: 360 EYVMLKDVNDSIEDAKGLIKLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNA 419
Query: 432 GCTVFLRLSRGDDQMAACGQL 452
G +R RG D +AACGQL
Sbjct: 420 GYASPIRTPRGRDILAACGQL 440
>gi|89256367|ref|YP_513729.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica LVS]
gi|115314812|ref|YP_763535.1| Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
holarctica OSU18]
gi|254367703|ref|ZP_04983724.1| radical SAM superfamily protein; probable Fe-S-cluster
oxidoreductase [Francisella tularensis subsp. holarctica
257]
gi|422938760|ref|YP_007011907.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC200]
gi|122325172|sp|Q0BLY6.1|RLMN_FRATO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|122999743|sp|Q2A3H3.1|RLMN_FRATH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89144198|emb|CAJ79467.1| Radical SAM superfamily protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129711|gb|ABI82898.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253514|gb|EBA52608.1| radical SAM superfamily protein; probable Fe-S-cluster
oxidoreductase [Francisella tularensis subsp. holarctica
257]
gi|407293911|gb|AFT92817.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC200]
Length = 370
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 183/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L + A+ + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRHKLKDKAQITIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQ+GC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+ D +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHTPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|337287595|ref|YP_004627067.1| Ribosomal RNA large subunit methyltransferase N
[Thermodesulfobacterium sp. OPB45]
gi|334901333|gb|AEH22139.1| Ribosomal RNA large subunit methyltransferase N
[Thermodesulfobacterium geofontis OPF15]
Length = 362
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 183/310 (59%), Gaps = 9/310 (2%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W C +E+ L K + LSE+ + D DGT K L D +IET
Sbjct: 34 WITCKNAITFEEMTDLPKSLRTKLSENFSLELPEIVDKEEDIDGTVKFALKLKDNNLIET 93
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EV 263
V+IP + T+CVS+QVGC + C+FC TG++G KR+L EI+ Q V ARR L E
Sbjct: 94 VIIP-EKDHYTLCVSTQVGCPIGCKFCVTGKIGFKRNLEVYEIISQVVIARRYLKEKEEE 152
Query: 264 GSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESN 323
+ N+VFMGMGEPL N++N+IKA I+ H +G ++S +++TVST GL+ +++ E +
Sbjct: 153 LPLRNIVFMGMGEPLLNLKNLIKALKILAHPKGFNYSRKRLTVSTVGLLKEMEILAKEFS 212
Query: 324 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF 383
ALA+SL+A TDE+R ++PI +KY + LI ++ KN+ + EYV++ VNDS
Sbjct: 213 TALAISLHAPTDEIRRELIPIAKKYSVEELILACKKFPRIKNS-RTTIEYVIIKDVNDSL 271
Query: 384 DDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443
+ AK+L L++G P K+NLI FNPH F + E + F+ L G +R S+G
Sbjct: 272 ESAKKLADLLKGYPFKVNLIPFNPHPEIPFERPSQEVVERFQKYLLSRGILTTVRKSKGL 331
Query: 444 DQMAACGQLG 453
AACGQLG
Sbjct: 332 GIDAACGQLG 341
>gi|205829900|sp|Q2K3B1.2|RLMN_RHIEC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 409
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 201/362 (55%), Gaps = 30/362 (8%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALM----LWKRLY--GDDIWAHCTDELEGLNKDFKKML 169
L G+S E+ +R Q M LW +Y G + H T+ + KD ++ML
Sbjct: 26 LIGLSREEMAAALREKGVPEKQIKMRVSQLWNWIYVRGVSDFDHMTN----VAKDMREML 81
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQVG 224
+H + + S+DGTRK L + IE V IP GR T+C+SSQVG
Sbjct: 82 KQHFTIARPEIVEEQVSNDGTRKWLLRFPARGAGRPVEIEAVYIP-EEGRGTLCISSQVG 140
Query: 225 CAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARR--------------LLSSEVGSITNVV 270
C + C FC+TG L R+LTA EI+ Q + AR ++ +E ++N+V
Sbjct: 141 CTLTCSFCHTGTQRLVRNLTAEEILSQLLLARDRLGDFPDREAPQGTIMPAEGRKVSNIV 200
Query: 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSL 330
MGMGEPL+N + V +A I GL S R+VT+STSG+VP++ + E LA+SL
Sbjct: 201 MMGMGEPLYNFDAVKQALLIATDGDGLSLSKRRVTLSTSGVVPEIFRTGEEIGVMLAISL 260
Query: 331 NATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390
+A D++R+ ++PIN+KY L LI+ + N ++ FEYVML VNDS +DAK LI
Sbjct: 261 HAVRDDLRDILVPINKKYPLKELIDACKAYPGLSNARRITFEYVMLKDVNDSLEDAKGLI 320
Query: 391 GLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACG 450
L++G+P KINLI FNP G+ + + E++ +F + + AG +R RG D +AACG
Sbjct: 321 KLLKGVPAKINLIPFNPWPGTNYQCSDWEQIEKFADFINSAGYASPIRTPRGRDILAACG 380
Query: 451 QL 452
QL
Sbjct: 381 QL 382
>gi|134301956|ref|YP_001121925.1| radical SAM protein [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421753618|ref|ZP_16190609.1| radical SAM protein [Francisella tularensis subsp. tularensis 831]
gi|421757344|ref|ZP_16194226.1| radical SAM protein [Francisella tularensis subsp. tularensis
80700103]
gi|421759203|ref|ZP_16196037.1| radical SAM protein [Francisella tularensis subsp. tularensis
70102010]
gi|424674522|ref|ZP_18111440.1| radical SAM protein [Francisella tularensis subsp. tularensis
70001275]
gi|205829767|sp|A4IY03.1|RLMN_FRATW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|134049733|gb|ABO46804.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086884|gb|EKM86997.1| radical SAM protein [Francisella tularensis subsp. tularensis 831]
gi|409091267|gb|EKM91270.1| radical SAM protein [Francisella tularensis subsp. tularensis
70102010]
gi|409092799|gb|EKM92766.1| radical SAM protein [Francisella tularensis subsp. tularensis
80700103]
gi|417435000|gb|EKT89932.1| radical SAM protein [Francisella tularensis subsp. tularensis
70001275]
Length = 370
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/314 (41%), Positives = 183/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L E A+ + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRHKLKEKAQITIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V I GR T+CVSSQVGC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFI-LEEGRGTLCVSSQVGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+A D +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHAPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|372270406|ref|ZP_09506454.1| radical SAM protein [Marinobacterium stanieri S30]
Length = 377
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 198/346 (57%), Gaps = 7/346 (2%)
Query: 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLS 170
+++ L G+S +L + + +A + K L+ A DE+ ++K + L+
Sbjct: 5 ATKINLLGLSPAKLIAFFEQQGEKKFRATQVLKWLHQQ--GASSFDEMTNISKAMRAKLA 62
Query: 171 EHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQ 230
E AE R + TS DGTRK + +D G IE V+IP + R T+CVSSQVGC+++C
Sbjct: 63 EVAEIREPEVLLDKTSRDGTRKWVIRMDGGSAIEMVLIP-DGDRRTLCVSSQVGCSLDCS 121
Query: 231 FCYTGRMGLKRHLTAAEIVEQAVFARRL---LSSEVGSITNVVFMGMGEPLHNVENVIKA 287
FC TG+ G R+L+ AEI+ Q A R +TNVV MGMGEPL N ENV+ A
Sbjct: 122 FCSTGKQGFNRNLSTAEIIAQLRVAIRSCGPFEPSKRHVTNVVMMGMGEPLMNFENVVDA 181
Query: 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347
+M+ + S R+VT+ST+G+VP L + S+ +LA+SL+A +E+R+ ++PIN++
Sbjct: 182 TQLMMDDNAYGLSKRRVTLSTAGVVPALDKLSQVSDVSLAISLHAPNNELRDQLVPINKR 241
Query: 348 YKLGLLIETLREELH-FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406
Y + LI L + EY ++ GVND + A+ L L++ +PCK+NLI FN
Sbjct: 242 YPIEELIAASNRYLESLPDKRAATVEYTLIDGVNDQPEHARELAKLLKQLPCKLNLIPFN 301
Query: 407 PHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
P S + +++ + F++IL A +R +RGDD AACGQL
Sbjct: 302 PFPNSGYRRPSEQAIQRFKDILVRASIITTVRRTRGDDVDAACGQL 347
>gi|304320170|ref|YP_003853813.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis
HTCC2503]
gi|303299073|gb|ADM08672.1| hypothetical protein PB2503_02977 [Parvularcula bermudensis
HTCC2503]
Length = 382
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 202/361 (55%), Gaps = 14/361 (3%)
Query: 104 INVLPKKGS--RVLLKGMSFTELQQ-WVRSHAFRPGQALM----LWKRLYGDDIWAHCTD 156
I+ LP+ + R L G+S LQ + P A M +W+ +Y + D
Sbjct: 5 ISTLPEAAAPQRRRLFGLSRAALQSLFAADLGLAPKAAKMRASQVWQWIYSHGVREF--D 62
Query: 157 ELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTT 216
++ + K + + + + + S DGTRK L G+ E V IP
Sbjct: 63 QMTNIGKALRAQMDALYDLSRPEVAERQVSQDGTRKYLIRFAPGIEAEAVFIPGVGRAGA 122
Query: 217 VCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL-----SSEVGSITNVVF 271
+CVSSQVGC +NC FC+TG L R+LTA EI+ Q + + L S + ++N+VF
Sbjct: 123 LCVSSQVGCTLNCTFCHTGTQALVRNLTAEEIIAQIIVCKDDLGEWPSSRDDRQLSNIVF 182
Query: 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLN 331
MGMGEPL+N++ V +A +I+ +G+ S R++TVSTSG+V Q++ + LA+SL+
Sbjct: 183 MGMGEPLYNLDAVAQAIDIIADGEGISISRRRITVSTSGVVSQMRALGERTEAMLAISLH 242
Query: 332 ATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIG 391
AT D +RN ++PIN+K+ L L+ R+ N ++ FEYVML G+NDS +A+ L+
Sbjct: 243 ATHDALRNELVPINKKWPLDALLAACRDYPGTSNAKRITFEYVMLKGINDSDAEARELVR 302
Query: 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQ 451
L++GIP KINLI FNP S + ++ +++ F +I+ AG +R RG D AACGQ
Sbjct: 303 LLRGIPAKINLIPFNPWPDSPYECSSWDRIERFADIVNQAGYASPIRTPRGRDISAACGQ 362
Query: 452 L 452
L
Sbjct: 363 L 363
>gi|255323622|ref|ZP_05364752.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
gi|255299336|gb|EET78623.1| radical SAM enzyme, Cfr family [Campylobacter showae RM3277]
Length = 363
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 189/332 (56%), Gaps = 18/332 (5%)
Query: 135 PGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKIL 194
P +A +++ LY + A DE+ L KD + L + L S+DG+ K L
Sbjct: 19 PFRAKQIFEWLYKKN--ATSFDEMLNLPKDLRANLVQEFYLDPLKCVKFERSADGSIKYL 76
Query: 195 FMLDDGLVIETVVIPCNR------------GRTTVCVSSQVGCAMNCQFCYTGRMGLKRH 242
F L DGL IE+V++P R T+CVSSQVGC M C FC TG+ GL R+
Sbjct: 77 FELKDGLRIESVLLPMKEELNDENGEVTRHARYTICVSSQVGCRMGCSFCLTGKSGLTRN 136
Query: 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
LT EIV Q + +R NVV+MGMGEPL N+ENV KA I+ GL +PR
Sbjct: 137 LTPGEIVGQILCIKRENKIPYERRVNVVYMGMGEPLDNLENVSKAIKILKENDGLAITPR 196
Query: 303 KVTVSTSGLVPQLKQFLNESNCA--LAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360
+ TVSTSGL Q+K+ L E + LA+SL+A T+E+R+ +MPIN YK+ ++E +R
Sbjct: 197 RQTVSTSGLGSQIKK-LGEMDLGVLLAISLHAVTNELRSKLMPINNAYKIESVMEAVRG- 254
Query: 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEK 420
+V+FEY+++ +ND DAK+L+ L+ GI K+NLI FNPH GS++
Sbjct: 255 FPIDMRKRVMFEYLVIKDMNDGIKDAKKLVSLLHGIKAKVNLIYFNPHEGSEYGRPNTAD 314
Query: 421 MIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
M F+ L G T +R S+G D AACGQL
Sbjct: 315 MEAFQTYLRDHGVTCTIRQSKGLDISAACGQL 346
>gi|293604539|ref|ZP_06686944.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
gi|292817120|gb|EFF76196.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
Length = 384
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 197/358 (55%), Gaps = 21/358 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALML--WKRLYGDDIWAHCTDELEGLNKDFKKML 169
R+ L G+ + L + V +P +A L W G D + TD L ++F+ L
Sbjct: 5 ERINLLGLDGSALSELVGQWGGKPFRARQLQRWMHQRGADSFDAMTD----LAREFRSQL 60
Query: 170 SEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNC 229
+ + AL + S+DGTRK LF + G IETV IP + R T+C+SSQ GC +NC
Sbjct: 61 ASNCRIEALPVNIEQRSADGTRKWLFDVGQGNAIETVFIPED-DRGTLCISSQAGCVVNC 119
Query: 230 QFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------------ITNVVFMGMG 275
+FC TG G R+L +EI+ Q +A+R+L +++G+ I+NVV MGMG
Sbjct: 120 RFCSTGHQGFNRNLKTSEIIGQLWWAKRVLEADIGTARLESAKATEDTRVISNVVMMGMG 179
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N + V+ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A D
Sbjct: 180 EPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPND 239
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
+R+ ++P+N+KY L L+ L F + FEY ML G+ND+ AK LI + +
Sbjct: 240 ALRDELVPLNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQ 299
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ CK+NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 300 LRCKLNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLA 357
>gi|156502452|ref|YP_001428517.1| radical SAM protein [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|423050715|ref|YP_007009149.1| radical SAM protein [Francisella tularensis subsp. holarctica F92]
gi|205829764|sp|A7NC58.1|RLMN_FRATF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156253055|gb|ABU61561.1| radical SAM enzyme, Cfr family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421951437|gb|AFX70686.1| radical SAM protein [Francisella tularensis subsp. holarctica F92]
Length = 370
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 183/314 (58%), Gaps = 13/314 (4%)
Query: 151 WAHCT-----DELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIET 205
W H D + L K+ + L + A+ + S DGT K L + G +ET
Sbjct: 36 WIHKKGVIDFDAMTDLGKNLRHKLKDKAQITIPKVVFSKASKDGTHKWLIDVG-GSAVET 94
Query: 206 VVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG- 264
V IP GR T+CVSSQ+GC +NC FC TG+ G R+L+AAE++ Q A R LS G
Sbjct: 95 VFIP-EEGRGTLCVSSQIGCTLNCSFCSTGKQGFNRNLSAAEVIAQLWIAARTLSKTDGE 153
Query: 265 ---SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE 321
++TN+V MGMGEPL N ENV+ A +IM+ + S RKVT+STSG+VP++ L +
Sbjct: 154 HDFTVTNIVMMGMGEPLMNFENVVPAMDIMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQ 213
Query: 322 SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVND 381
S +LAVSL+ D +RN I+PIN+KY + L+E + + + FEY ++ VND
Sbjct: 214 SGVSLAVSLHTPNDMLRNEIVPINKKYNIDELLEACKLYAQKGPHKHITFEYTLMEEVND 273
Query: 382 SFDDAKRLIGLVQG--IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
+ DA+ L+ L++ +P KINLI FNP+ G+ + ++ ++ F+ L G +R
Sbjct: 274 NLSDAEELVALLKSREVPAKINLIPFNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRK 333
Query: 440 SRGDDQMAACGQLG 453
+RGDD AACGQL
Sbjct: 334 TRGDDIDAACGQLA 347
>gi|375264584|ref|YP_005022027.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. EJY3]
gi|369839908|gb|AEX21052.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. EJY3]
Length = 375
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDDF----DNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREVGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|433656884|ref|YP_007274263.1| Ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus BB22OP]
gi|432507572|gb|AGB09089.1| Ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus BB22OP]
Length = 375
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDDF----DNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|410085619|ref|ZP_11282338.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii SC01]
gi|455738863|ref|YP_007505129.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii subsp. morganii KT]
gi|409768328|gb|EKN52392.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii SC01]
gi|455420426|gb|AGG30756.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii subsp. morganii KT]
Length = 392
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/360 (38%), Positives = 209/360 (58%), Gaps = 21/360 (5%)
Query: 106 VLPKK-GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE--- 159
+ P+K ++ L ++ E++Q+ +P +A +M W I+ +C D+ +
Sbjct: 17 IAPEKINGKINLLDLTRKEMRQFFADMGEKPFRADQVMKW-------IYHYCYDDFDLMT 69
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
+NK + L AE RA + + S+DGT K + D V ETV IP + R T+CV
Sbjct: 70 DINKVLRTKLKAVAEIRAPEVSEEQRSADGTIKWAIRVGDQEV-ETVYIPED-DRATLCV 127
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMG 275
SSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MGMG
Sbjct: 128 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMGMG 187
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N+ +V+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD
Sbjct: 188 EPLLNLTHVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTD 247
Query: 336 EVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
+VR+ I+PIN+KY + + ++R L N +V EYVML +NDS D A +L +
Sbjct: 248 DVRDEIVPINKKYNIETFLASVRRYLGKSNANGGRVTVEYVMLDHINDSTDQAHQLAACL 307
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ P KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 308 KDTPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACGQLA 367
>gi|75676990|ref|YP_319411.1| hypothetical protein Nwi_2806 [Nitrobacter winogradskyi Nb-255]
gi|74421860|gb|ABA06059.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrobacter winogradskyi
Nb-255]
Length = 427
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 189/330 (57%), Gaps = 19/330 (5%)
Query: 137 QALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFM 196
Q L W + G +A E+ ++KD + L +H + SSDGTRK L
Sbjct: 81 QQLWHWMYVRGARTFA----EMTSVSKDMRAELEKHVTLDRPEVVAEQISSDGTRKWLLR 136
Query: 197 LDDG------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
L G +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV
Sbjct: 137 LPSGDDLEKPHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVG 195
Query: 251 QAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
Q + AR L+ +TN+V MGMGEPL+N + V I+ +G+ S R
Sbjct: 196 QIMVARDRLNDWADRETPHGNRLVTNIVMMGMGEPLYNFDAVRDGLLIVADNEGIGISKR 255
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
++T+STSG+VP + + E LA+SL+A DE+R+ ++P+NRKY + L++ R+
Sbjct: 256 RITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELRDELVPLNRKYPIAELMQACRDYPA 315
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
N ++ FEYVML GVNDS DDA+RL+ L+ GI KINLI FNP G+++ + +++
Sbjct: 316 ASNAKRITFEYVMLKGVNDSLDDARRLVKLLNGIHAKINLIPFNPWPGTRYECSDWDQIE 375
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + AG + +R RG D +AACGQL
Sbjct: 376 KFSEYVFNAGYSSPVRTPRGRDILAACGQL 405
>gi|398826774|ref|ZP_10585008.1| 23S rRNA methyltransferase [Bradyrhizobium sp. YR681]
gi|398220423|gb|EJN06873.1| 23S rRNA methyltransferase [Bradyrhizobium sp. YR681]
Length = 400
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 204/357 (57%), Gaps = 19/357 (5%)
Query: 112 SRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGLNKDFKK 167
+R L G+S +EL + P Q M LW +Y A D++ ++K +
Sbjct: 25 ARPSLIGLSRSELADRLGEIGVAPAQRKMRVQQLWHWMYFRG--AQSFDDMTSVSKGIRA 82
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRTTVCVSS 221
L++H + S+DGTRK L L G +E V IP R T+CVSS
Sbjct: 83 ELAQHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVQKAHEVECVYIP-ETDRGTLCVSS 141
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGS--ITNVVFMGMG 275
QVGC +NC FC+TG L R+LTA EIV Q + AR L+ E G+ +TN+V MGMG
Sbjct: 142 QVGCTLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADREDGTRRVTNIVMMGMG 201
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL+N + V A I+ +G+ S R++T+STSG+VP + + E LA+SL+A D
Sbjct: 202 EPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRD 261
Query: 336 EVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
E+RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDAK L+ +++G
Sbjct: 262 ELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKILKG 321
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
I KINLI FNP G+ + + +++ +F + AG + +R RG D +AACGQL
Sbjct: 322 IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQL 378
>gi|319780692|ref|YP_004140168.1| Cfr family radical SAM protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166580|gb|ADV10118.1| radical SAM enzyme, Cfr family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 411
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 204/372 (54%), Gaps = 36/372 (9%)
Query: 108 PKKGSRVLLKGMSFTELQQ-WVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL- 161
P+K S L G++ EL + V S A QA M LW +Y + G+
Sbjct: 23 PEKQS---LIGLTRIELAETLVASGAVPERQAKMRAQQLWHWMY-----VRGVSDFAGMF 74
Query: 162 --NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGR 214
+KD + L +H + + S+DGTRK LF + IETV IP GR
Sbjct: 75 NISKDLRAELDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIP-EEGR 133
Query: 215 TTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS-------------- 260
T+C+SSQVGC + C FC+TG L R+LTA EI+ Q + AR L
Sbjct: 134 GTLCISSQVGCTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVP 193
Query: 261 SEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 320
+E ++N+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ +
Sbjct: 194 AEGRKVSNIVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGE 253
Query: 321 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 380
E LA+SL+AT D++R+ ++PIN+KY L LI R N ++ FEYVML VN
Sbjct: 254 EIGVMLAISLHATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVN 313
Query: 381 DSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLS 440
DS +DAK LI L++GIP KINLI FNP G+ + + E + +F + + AG +R
Sbjct: 314 DSIEDAKGLIKLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTP 373
Query: 441 RGDDQMAACGQL 452
RG D +AACGQL
Sbjct: 374 RGRDILAACGQL 385
>gi|395500506|ref|ZP_10432085.1| hypothetical protein PPAM2_30665 [Pseudomonas sp. PAMC 25886]
gi|395799020|ref|ZP_10478302.1| hypothetical protein A462_27168 [Pseudomonas sp. Ag1]
gi|421138873|ref|ZP_15598925.1| radical SAM enzyme, Cfr family protein [Pseudomonas fluorescens
BBc6R8]
gi|395336707|gb|EJF68566.1| hypothetical protein A462_27168 [Pseudomonas sp. Ag1]
gi|404510016|gb|EKA23934.1| radical SAM enzyme, Cfr family protein [Pseudomonas fluorescens
BBc6R8]
Length = 382
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 199/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR Q + L DD D + ++K + L
Sbjct: 10 LLGLTQQEMEKFFDSIGEKRFRAAQVMKWIHHLGVDDF-----DAMTNVSKALRDKLKAI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPATADRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY ML +ND + A +I L++ +PCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKNVPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|255535320|ref|YP_003095691.1| radical SAM protein [Flavobacteriaceae bacterium 3519-10]
gi|255341516|gb|ACU07629.1| radical SAM enzyme, Cfr family protein [Flavobacteriaceae bacterium
3519-10]
Length = 358
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 202/345 (58%), Gaps = 8/345 (2%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEF 175
++ +S ELQ + + +P +A +++ L+ ++ H DE+ L+KD ++ +++
Sbjct: 18 IRTLSLEELQNYFVTLGEKPFRAKQVYEWLWSKNL--HSIDEMTNLSKDLREKIAQEYTI 75
Query: 176 RALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTG 235
+S+ + SSDGT K L DGL++E+V+IP RTT CVSSQVGC++NC+FC T
Sbjct: 76 NPISVDQLQKSSDGTIKNGVKLHDGLLVESVLIP-TETRTTACVSSQVGCSLNCEFCATA 134
Query: 236 RMGLKRHLTAAEIVEQAVFARRLLSSEVGS-ITNVVFMGMGEPLHNVENVIKAANIMVHE 294
R+ R+L AEIV+Q R ++N+VFMGMGEP+ N +NV++A +
Sbjct: 135 RLKRMRNLEVAEIVDQVALIDRQSKMYFDRPLSNIVFMGMGEPMMNYKNVVEAIRKITAP 194
Query: 295 QGLHFSPRKVTVSTSGLVPQLKQFLNESN--CALAVSLNATTDEVRNWIMPINRKYKLGL 352
GL +PR++TVSTSG +P++ + L + N LA+SL++ ++ RN IMP + ++ L
Sbjct: 195 DGLGMAPRRITVSTSG-IPKMIKMLADENLRVNLALSLHSAIEKTRNEIMPFSDRFPLTD 253
Query: 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ 412
++++L+ + K V FEY + G+ND +D K LI + IPCK+NLI +NP +
Sbjct: 254 IMDSLK-HWYEKTGNIVTFEYCVWKGINDEDEDIKALIRYCKQIPCKVNLIQYNPIGDGK 312
Query: 413 FTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGA 457
+ + L AG TV +R SRG D AACGQL N +
Sbjct: 313 YDRCNKAAEENYVRQLENAGITVLIRRSRGGDIDAACGQLANKSS 357
>gi|421493317|ref|ZP_15940674.1| YFGB [Morganella morganii subsp. morganii KT]
gi|400192485|gb|EJO25624.1| YFGB [Morganella morganii subsp. morganii KT]
Length = 395
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/360 (38%), Positives = 209/360 (58%), Gaps = 21/360 (5%)
Query: 106 VLPKK-GSRVLLKGMSFTELQQWVRSHAFRPGQA--LMLWKRLYGDDIWAHCTDELE--- 159
+ P+K ++ L ++ E++Q+ +P +A +M W I+ +C D+ +
Sbjct: 20 IAPEKINGKINLLDLTRKEMRQFFADMGEKPFRADQVMKW-------IYHYCYDDFDLMT 72
Query: 160 GLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCV 219
+NK + L AE RA + + S+DGT K + D V ETV IP + R T+CV
Sbjct: 73 DINKVLRTKLKAVAEIRAPEVSEEQRSADGTIKWAIRVGDQEV-ETVYIPED-DRATLCV 130
Query: 220 SSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMG 275
SSQVGCA+ C+FC T + G R+L +EI+ Q A +++ S S ITNVV MGMG
Sbjct: 131 SSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGSLKSSGRRPITNVVMMGMG 190
Query: 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTD 335
EPL N+ +V+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A TD
Sbjct: 191 EPLLNLTHVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTD 250
Query: 336 EVRNWIMPINRKYKLGLLIETLREEL--HFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393
+VR+ I+PIN+KY + + ++R L N +V EYVML +NDS D A +L +
Sbjct: 251 DVRDEIVPINKKYNIETFLASVRRYLGKSNANGGRVTVEYVMLDHINDSTDQAHQLAACL 310
Query: 394 QGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ P KINLI +NP G+ + +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 311 KDTPSKINLIPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACGQLA 370
>gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A]
gi|205829748|sp|A5EVN1.1|RLMN_DICNV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 364
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 193/336 (57%), Gaps = 12/336 (3%)
Query: 124 LQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDI 183
L W + +P +A + K LY + ++ + + L+K + MLSE A +
Sbjct: 15 LADWFVAQGEQPFRAKQVLKWLYHERVYDF--ERMTDLSKKLRAMLSEKACVILPQVIAD 72
Query: 184 LTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHL 243
T+ DGTRK +F IE V IP R T+C+SSQ GCA+ C FC T R G R+L
Sbjct: 73 KTARDGTRKWVFQYACTNSIEAVFIP-EDDRGTLCISSQAGCALACPFCSTARAGFNRNL 131
Query: 244 TAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHF 299
T EIV Q A+ L+ E ITNVV MGMGEPL N V+ A I + + G
Sbjct: 132 TTGEIVVQVWLAKELVHCERNGNSRLITNVVLMGMGEPLINFNQVLPATEIFMSDWGFGL 191
Query: 300 SPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359
S R+VT+STSG+VP + + ++ +LAVSL+A DE+RN I+PIN++Y L LIE
Sbjct: 192 SKRRVTLSTSGVVPAIHKLREVTDLSLAVSLHAPNDELRNKIVPINQRYGLKALIEAC-- 249
Query: 360 ELHFKNNYK---VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPT 416
L+ +NN + + +EYVML GVND+ + A++L L++ +P KINLI FN S F +
Sbjct: 250 ALYAENNKQHGGITWEYVMLKGVNDTLEHAQQLADLLRNVPGKINLIPFNEFPNSPFQCS 309
Query: 417 TDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+ E ++ F+ L AG +R +RGDD AACGQL
Sbjct: 310 SWEDIVRFQQFLQKAGYIATIRKTRGDDIDAACGQL 345
>gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4]
gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4]
Length = 372
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/320 (42%), Positives = 187/320 (58%), Gaps = 17/320 (5%)
Query: 151 WAH---CTD--ELEGLNKDFKKMLSEHAEFRALSLKDILT---SSDGTRKILFMLDDGLV 202
W H TD + L+K + L+E A ++L +++ S+DGT K L + G
Sbjct: 37 WLHQQFVTDFSAMTDLSKSLRARLAETA---VIALPEVVHQHHSTDGTYKWLLRVSGGNC 93
Query: 203 IETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE 262
IETV IP R T+CVSSQVGC ++C FC TG+ G R+L +EI+ Q A + L +
Sbjct: 94 IETVFIP-EEDRGTLCVSSQVGCILDCSFCATGKQGFNRNLGVSEIIGQLWLANKALGRD 152
Query: 263 VGS---ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319
ITNVV MGMGEPL N NV+ A N+M+ + S R+VT+ST+G+VP + +
Sbjct: 153 PKGERIITNVVMMGMGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLR 212
Query: 320 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGV 379
+LAVSL+A TDE+R+ ++P+N++Y +G L+ R + V FEYVMLAGV
Sbjct: 213 AICPVSLAVSLHAPTDELRDELVPLNKRYPIGELLAACRRYVAGDRRRAVTFEYVMLAGV 272
Query: 380 NDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRL 439
NDS A+ L+ L+QG+P K+NLI FNP GS + + E + FR L G R
Sbjct: 273 NDSLQHARALLRLLQGLPAKVNLIPFNPFPGSLYRRSDTETIDRFREELLRGGLMTVTRK 332
Query: 440 SRGDDQMAACGQLGNPGAIQ 459
+RGDD AACGQL G +Q
Sbjct: 333 TRGDDIAAACGQLA--GRVQ 350
>gi|387888362|ref|YP_006318660.1| radical SAM protein [Escherichia blattae DSM 4481]
gi|414593916|ref|ZP_11443557.1| ribosomal RNA large subunit methyltransferase N [Escherichia
blattae NBRC 105725]
gi|386923195|gb|AFJ46149.1| radical SAM enzyme [Escherichia blattae DSM 4481]
gi|403195173|dbj|GAB81209.1| ribosomal RNA large subunit methyltransferase N [Escherichia
blattae NBRC 105725]
Length = 388
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 204/353 (57%), Gaps = 16/353 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYG---DDIWAHCTDELEGLNKDFK 166
K ++ L ++ +++++ +S +P +A + K +Y DD DE+ +NK +
Sbjct: 18 KAEKINLLDLNRPQMREFFKSMGEKPFRADQVMKWIYHYCCDDF-----DEMTDINKVLR 72
Query: 167 KMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCA 226
L E AE RA + + SSDGT K + D V ETV IP + R T+CVSSQVGCA
Sbjct: 73 ARLKEIAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSSQVGCA 130
Query: 227 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVE 282
+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEPL N+
Sbjct: 131 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKITGQRPITNVVMMGMGEPLLNLT 190
Query: 283 NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIM 342
NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A D +R+ I+
Sbjct: 191 NVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIV 250
Query: 343 PINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
PINRKY + + +R L N +V EYVML +ND + A +L ++ PCKI
Sbjct: 251 PINRKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHINDGVEHAHQLAECLKDTPCKI 310
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI +NP G+ + +++ ++ F L G T +R +RGDD AACGQL
Sbjct: 311 NLIPWNPFPGAPYGRSSNSRIDRFSKTLMEYGFTTIVRKTRGDDIDAACGQLA 363
>gi|110639497|ref|YP_679706.1| hypothetical protein CHU_3124 [Cytophaga hutchinsonii ATCC 33406]
gi|123354303|sp|Q11QF0.1|RLMN_CYTH3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|110282178|gb|ABG60364.1| 23S rRNA m(2)A-2503 methyltransferase [Cytophaga hutchinsonii ATCC
33406]
Length = 365
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 18/346 (5%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQAL-MLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE 171
++ +S EL+ + + AFR Q LWKR A +++ L+K+ + +L
Sbjct: 25 IRSLSAEELKDFFVASGEKAFRSRQVYEWLWKR------SARSFEQMTNLSKETRTLLEN 78
Query: 172 HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQF 231
+ +++ S+DGT K F L DG ++E V+IP + R T C+SSQVGC++ C+F
Sbjct: 79 NFSINPVTISQKQVSTDGTIKFGFKLHDGYLVEGVLIPAD-DRMTACISSQVGCSLTCKF 137
Query: 232 CYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS-ITNVVFMGMGEPLHNVENVIKAANI 290
C TG M KR+L EI +Q V + + +TN+V MGMGEPL N NV+K +
Sbjct: 138 CATGYMDRKRNLEPYEIYDQVVLIKEAAEEHYQTPLTNIVLMGMGEPLLNYTNVLKGIDK 197
Query: 291 MVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYK 349
+ E+GLH + +++T+ST+G+ + + +E LA+SL+A D RN IMPIN
Sbjct: 198 VTSEEGLHIASKRITLSTAGIAKMITKLGDEKVKFRLALSLHAANDVKRNTIMPINETNN 257
Query: 350 LGLLIETLREELHF--KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L E+L LHF + V FEY++ GVND+ DAK L + IPCKIN+I +NP
Sbjct: 258 LNVLKESL---LHFCKETGSSVTFEYIVFDGVNDTAQDAKELYAFAKNIPCKINIIEYNP 314
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+ F T+ +K+ +F+ +L G V +R SRG D AACGQL
Sbjct: 315 IQEADFMNTSVDKLEQFKKVLTDKGIIVNIRRSRGKDIDAACGQLA 360
>gi|350530359|ref|ZP_08909300.1| ribosomal RNA large subunit methyltransferase N [Vibrio
rotiferianus DAT722]
Length = 375
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDDF----DNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|269962413|ref|ZP_06176763.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832909|gb|EEZ87018.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 375
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDDF----DNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYDHTVTVRKTRGDDIDAACGQL 347
>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
gi|81680833|sp|Q603C0.1|RLMN_METCA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
str. Bath]
Length = 366
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 184/320 (57%), Gaps = 7/320 (2%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L+ W G + T+ L+K + L +E R L S+DGTRK
Sbjct: 36 FRASQ-LLQWIHQRGVTDFGLMTN----LSKTLRSRLEAVSEIRPPELVLEQRSADGTRK 90
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
+ +D +ETV+IP + GR T+CVSSQVGC++ C FC T R G R+LT AEI+ Q
Sbjct: 91 WVLQVDAVNRVETVLIP-DEGRNTLCVSSQVGCSLECSFCSTARQGFNRNLTTAEIIGQL 149
Query: 253 VFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV 312
A+ L E I+NVV MGMGEPL N NV+ A +M+ + S R+VT+STSG+V
Sbjct: 150 WVAQHRLDEE-QRISNVVLMGMGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIV 208
Query: 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372
P L + S+ +LAVSL+A D +RN ++PINRKY + L+ + + +N KV FE
Sbjct: 209 PALDRLAEVSDISLAVSLHAPDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFE 268
Query: 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432
YVML GVND + A+ L+ L+ +P K+NLI FNP S + + E + F L AG
Sbjct: 269 YVMLDGVNDRPEHARALVRLLSHVPSKVNLIPFNPFPNSAYRCSHPETIARFAQTLQDAG 328
Query: 433 CTVFLRLSRGDDQMAACGQL 452
R +RG D AACGQL
Sbjct: 329 LITTTRKTRGRDIDAACGQL 348
>gi|398937801|ref|ZP_10667467.1| 23S rRNA methyltransferase [Pseudomonas sp. GM41(2012)]
gi|398166569|gb|EJM54663.1| 23S rRNA methyltransferase [Pseudomonas sp. GM41(2012)]
Length = 382
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 200/345 (57%), Gaps = 14/345 (4%)
Query: 116 LKGMSFTELQQWVRS---HAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEH 172
L G++ E++++ S FR GQ + L DD D + ++K + L
Sbjct: 10 LLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDF-----DAMTNVSKALRDKLKVI 64
Query: 173 AEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFC 232
AE R + S+DGTRK + + G +ETV IP + R T+CVSSQ GCA++C FC
Sbjct: 65 AEVRGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGK-RGTLCVSSQAGCALDCSFC 123
Query: 233 YTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEPLHNVENVIKAA 288
TG+ G +LTAAE++ Q A + S + ITNVV MGMGEPL N +NV+ A
Sbjct: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSIPATADRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 289 NIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348
++M+ + G S R+VT+STSG+VP + + + +LA+SL+A D +RN ++PIN+KY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 349 KLGLLIETLREELHFKNNYKVL-FEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNP 407
L +L+E+ + + +VL EY +L +ND + A +I L++ IPCKINLI FNP
Sbjct: 244 PLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKNIPCKINLIPFNP 303
Query: 408 HCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
S + ++ + F++ L AG V +R +RG+D AACGQL
Sbjct: 304 FPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQL 348
>gi|417122505|ref|ZP_11971763.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0246]
gi|386147785|gb|EIG94225.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0246]
Length = 384
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 208/358 (58%), Gaps = 17/358 (4%)
Query: 105 NVLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTD---ELEGL 161
NV K G ++ L ++ +++++ + +P +A + K +Y +C D E+ +
Sbjct: 10 NVTTKDG-KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMY-----HYCCDNFDEMTDI 63
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSS 221
NK + L E AE RA + + SSDGT K + D V ETV IP + R T+CVSS
Sbjct: 64 NKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV-ETVYIPED-DRATLCVSS 121
Query: 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGS----ITNVVFMGMGEP 277
QVGCA+ C+FC T + G R+L +EI+ Q A +++ + + ITNVV MGMGEP
Sbjct: 122 QVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEP 181
Query: 278 LHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEV 337
L N+ NV+ A IM+ + G S R+VT+STSG+VP L + + + ALA+SL+A DE+
Sbjct: 182 LLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEI 241
Query: 338 RNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395
R+ I+PIN+KY + + +R L N +V EYVML VND + A +L L++
Sbjct: 242 RDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD 301
Query: 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
PCKINLI +NP G+ +++ ++ F +L G T +R +RGDD AACGQL
Sbjct: 302 TPCKINLIPWNPFPGAPCGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLA 359
>gi|302039009|ref|YP_003799331.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Nitrospira defluvii]
gi|300607073|emb|CBK43406.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Nitrospira defluvii]
Length = 366
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/350 (38%), Positives = 211/350 (60%), Gaps = 8/350 (2%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDF 165
+L + SR L ++ +E+ +V S + +A + + LY + A E+ L++
Sbjct: 6 MLQQTESRTNLLALTESEMAAFVASLGWPAYRASQILRWLYQER--ARTFAEMSNLSQKD 63
Query: 166 KKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGC 225
++ L+ + S I +S DGT+K++ L DG +E V+IP + R T+C+S+QVGC
Sbjct: 64 REYLTGSSRIERTSAVQIFSSQDGTKKLVLTLADGNQVECVLIP-DEDRLTLCLSTQVGC 122
Query: 226 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVI 285
++C FC TG +GL+R+L A EI++Q + A+ L E +TN+VFMGMGEPL N++ V
Sbjct: 123 TLDCGFCLTGTLGLQRNLRAHEIIDQVLLAQDHLQ-EGQRLTNLVFMGMGEPLANLDAVA 181
Query: 286 KAANIMVHEQ-GLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344
A + ++ GL FS R++T+ST+GL ++K + LA+SLNATTD +R+ +MP
Sbjct: 182 DAVTRLTNQTWGLGFSGRRITISTAGLASRIKD-VAPLKVNLAISLNATTDALRDQLMPA 240
Query: 345 -NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403
NR + L L+ R + ++ FEYV+LA VND +DA RL+ L++G+ CK+NLI
Sbjct: 241 ANRLHSLDALLAACRA-YPLADRDRLTFEYVLLADVNDRTEDAARLVKLLRGLRCKVNLI 299
Query: 404 SFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
+FNP G+ + +D + F++ L V+LR SRG D + ACGQLG
Sbjct: 300 AFNPFPGNPYRRPSDAAIDTFQDTLRRGHVDVYLRRSRGRDVLGACGQLG 349
>gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas arsenicoxydans]
gi|205829776|sp|A4G4J9.1|RLMN_HERAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|133738391|emb|CAL61436.1| putative Fe-S-cluster redox enzyme [Herminiimonas arsenicoxydans]
Length = 386
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/336 (41%), Positives = 186/336 (55%), Gaps = 17/336 (5%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W +G A D + L K + L A A ++ TSSDGTRK
Sbjct: 28 FRAKQ-LQRWIHQFG----ASDFDAMTDLAKSLRDKLKTRAMIAAPAVISDHTSSDGTRK 82
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+C+S+Q GCA+NC+FC TG+ G R+L+ EI+ Q
Sbjct: 83 WLIDVGQGNAVETVFIP-EENRGTLCISTQAGCAVNCRFCSTGKQGFNRNLSVGEIIGQL 141
Query: 253 VFA----RRLLSSEVG-----SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
A RR E G ITNVV MGMGEPL N E + A +M+ + S R+
Sbjct: 142 WMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDDNAYGLSRRR 201
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VT+STSG+VP + + + ALAVSL+A+ D +R+ ++P+N+KY L L+ + L F
Sbjct: 202 VTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLQELMAACKRYLEF 261
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423
V FEY ML GVNDS A+ L+ LV+ +PCK NLI FNP S T + + ++
Sbjct: 262 APRDFVTFEYCMLDGVNDSDQHARELLTLVRDVPCKFNLIPFNPFPESGLTRSNNPRIKA 321
Query: 424 FRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQ 459
F +L G +R +RGDD AACGQL G +Q
Sbjct: 322 FAQVLMDGGLVTTIRKTRGDDIDAACGQLA--GEVQ 355
>gi|412338305|ref|YP_006967060.1| hypothetical protein BN112_0980 [Bordetella bronchiseptica 253]
gi|408768139|emb|CCJ52898.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 382
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 192/353 (54%), Gaps = 22/353 (6%)
Query: 116 LKGMSFTEL-QQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAE 174
L G + +EL QW FR Q L W G D + TD L +DF+ L+
Sbjct: 12 LDGAALSELVGQW-GGKPFRARQ-LQRWVHQRGADSFDAMTD----LARDFRAQLARDCV 65
Query: 175 FRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYT 234
AL + SSDGTRK LF + G IETV IP + R T+C+SSQ GC +NC+FC T
Sbjct: 66 IEALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPED-DRGTLCISSQAGCVVNCRFCST 124
Query: 235 GRMGLKRHLTAAEIVEQAVFARRLLSSEVGS--------------ITNVVFMGMGEPLHN 280
G G R+L A+EI+ Q +A+R+L + V + I+NVV MGMGEPL N
Sbjct: 125 GHQGFNRNLRASEIIGQLWWAKRVLEAAVDTARLPGGKAGEDTRVISNVVMMGMGEPLLN 184
Query: 281 VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNW 340
+ V+ A +M+ + S R+VTVSTSG+VP + + + ALAVSL+A D +R+
Sbjct: 185 YDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDE 244
Query: 341 IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400
++P+N+KY L L+ L + FEY ML G+ND+ A+ LI L + + CK+
Sbjct: 245 LVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVRCKL 304
Query: 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
NLI FNP S + ++ F L AG +R +RGDD AACGQL
Sbjct: 305 NLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIVTTVRKTRGDDIDAACGQLA 357
>gi|336233285|ref|YP_004590031.1| pyruvate formate lyase activating enzyme [Buchnera aphidicola
(Cinara tujafilina)]
gi|335345226|gb|AEH39772.1| putative pyruvate formate lyase activating enzyme [Buchnera
aphidicola (Cinara tujafilina)]
Length = 363
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/354 (36%), Positives = 206/354 (58%), Gaps = 16/354 (4%)
Query: 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDE--LEGLNKDFKK 167
K ++ L + +++++ S + +AL L +Y +C + ++ + KK
Sbjct: 8 KNKKINLLNFNLIQMKEFFLSLGEKKFRALQLMDWIYKK----YCCNFNFMDNFSDILKK 63
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAM 227
L+E A + S DGT K F +D G V ET+ IP + R+T+C+SSQ+GC +
Sbjct: 64 KLNEIAIIKPPQYISKKISMDGTIKWNFFVDSGYV-ETIYIP-EKNRSTLCISSQIGCVL 121
Query: 228 NCQFCYTGRMGLKRHLTAAEIVEQA------VFARRLLSSEVGSITNVVFMGMGEPLHNV 281
C FC TG +G R+L +EI+ Q ++ + ++ + ITN+V MGMGEPL N+
Sbjct: 122 KCNFCATGNLGFTRNLLVSEIIGQIWYIMNIIYHKSYINFSLSKITNIVMMGMGEPLLNL 181
Query: 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI 341
+NVI A +I++ + G FS KVT+ST+G+VP +K+ + + +LA+SL+A+ D +RN +
Sbjct: 182 KNVIPALHIILSKYGFSFSKHKVTLSTAGIVPAIKKICGKIDVSLAISLHASNDLLRNTL 241
Query: 342 MPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399
MPIN+K+ + L+ ++E L+F N V EYVML +NDS +A L+ L++ I CK
Sbjct: 242 MPINKKFNISSLLTVVKEYLNFSKANRSMVTIEYVMLKNINDSITNAFELVLLLKNISCK 301
Query: 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453
INLI +NP S + +T E +++F L G V +R +RG D AACGQL
Sbjct: 302 INLIPWNPIKDSTYQCSTVETILKFSEYLVKRGLIVKIRKNRGSDIYAACGQLS 355
>gi|254506728|ref|ZP_05118868.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
gi|219550309|gb|EED27294.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
Length = 374
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 193/327 (59%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDNF----DNMTNINKKLREKLQHRCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP + R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIPED-DRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLEKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKDTPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTIRKTRGDDIDAACGQL 347
>gi|383768579|ref|YP_005447642.1| ribosomal RNA large subunit methyltransferase N [Bradyrhizobium sp.
S23321]
gi|381356700|dbj|BAL73530.1| ribosomal RNA large subunit methyltransferase N [Bradyrhizobium sp.
S23321]
Length = 400
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 205/363 (56%), Gaps = 22/363 (6%)
Query: 106 VLPKKGSRVLLKGMSFTELQQWVRSHAFRPGQALM----LWKRLYGDDIWAHCTDELEGL 161
V P K S L G+S EL + P Q M LW +Y A DE+ +
Sbjct: 22 VPPAKPS---LIGLSRAELADRLGEIGVAPAQRKMRVQQLWHWMYFRG--AQNFDEMTSV 76
Query: 162 NKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFMLDDG------LVIETVVIPCNRGRT 215
+K + L++H + S+DGTRK L L G +E V IP R
Sbjct: 77 SKGIRAELAQHFTVDRPEVVAEQISNDGTRKWLLRLPSGDNVQKAHEVECVYIP-ETDRG 135
Query: 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS----EVGS--ITNV 269
T+CVSSQVGC +NC FC+TG L R+LTA EIV Q + AR L+ E G+ +TN+
Sbjct: 136 TLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWADREDGTRRVTNI 195
Query: 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVS 329
V MGMGEPL+N + V A I+ +G+ S R++T+STSG+VP + + E LA+S
Sbjct: 196 VMMGMGEPLYNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAIS 255
Query: 330 LNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRL 389
L+A DE+RN ++P+NRKY + L++ R+ N ++ FEYVML GVNDS DDAK L
Sbjct: 256 LHAVRDELRNELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLL 315
Query: 390 IGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAAC 449
+ +++GI KINLI FNP G+ + + +++ +F + AG + +R RG D +AAC
Sbjct: 316 VKMLKGIHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAAC 375
Query: 450 GQL 452
GQL
Sbjct: 376 GQL 378
>gi|433772385|ref|YP_007302852.1| 23S rRNA m2A2503 methyltransferase [Mesorhizobium australicum
WSM2073]
gi|433664400|gb|AGB43476.1| 23S rRNA m2A2503 methyltransferase [Mesorhizobium australicum
WSM2073]
Length = 411
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 198/364 (54%), Gaps = 33/364 (9%)
Query: 116 LKGMSFTELQQWVRSHAFRPGQ-----ALMLWKRLYGDDIWAHCTDELEGL---NKDFKK 167
L G++ TEL + P + A LW +Y + G+ +KD +
Sbjct: 28 LIGLTRTELAAALVESGIVPERQAKMRAQQLWHWMY-----VRGVSDFAGMFNISKDLRA 82
Query: 168 MLSEHAEFRALSLKDILTSSDGTRKILFML-----DDGLVIETVVIPCNRGRTTVCVSSQ 222
L +H + + S+DGTRK LF + IETV IP GR T+C+SSQ
Sbjct: 83 ELDKHFTVARPEIVEEQISADGTRKWLFRFPPRGAGRPVEIETVYIP-EEGRGTLCISSQ 141
Query: 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLS--------------SEVGSITN 268
VGC + C FC+TG L R+LTA EI+ Q + AR L +E ++N
Sbjct: 142 VGCTLTCSFCHTGTQKLVRNLTAEEILAQLLTARDRLGDFPDRDTPDGAIVPAEGRKVSN 201
Query: 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAV 328
+V MGMGEPL+N E V KA I GL S R++T+STSG+VP++ + E LA+
Sbjct: 202 IVMMGMGEPLYNFEAVKKALLIASDGDGLSLSKRRITLSTSGVVPEIFRTGEEIGVMLAI 261
Query: 329 SLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKR 388
SL+AT D++R+ ++PIN+KY L LI R N ++ FEYVML VNDS +DAK
Sbjct: 262 SLHATNDDLRDLLVPINKKYPLKELIAACRAYPGLSNAKRITFEYVMLKDVNDSIEDAKG 321
Query: 389 LIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAA 448
LI L++GIP KINLI FNP G+ + + E + +F + + AG +R RG D +AA
Sbjct: 322 LIKLLKGIPAKINLIPFNPWPGTNYQCSDWETIEKFADYINNAGYASPIRTPRGRDILAA 381
Query: 449 CGQL 452
CGQL
Sbjct: 382 CGQL 385
>gi|415904117|ref|ZP_11552301.1| Putative Fe-S-cluster redox enzyme [Herbaspirillum frisingense
GSF30]
gi|407763612|gb|EKF72252.1| Putative Fe-S-cluster redox enzyme [Herbaspirillum frisingense
GSF30]
Length = 380
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 144/351 (41%), Positives = 192/351 (54%), Gaps = 22/351 (6%)
Query: 133 FRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192
FR Q L W +G + TD L K + L AE RA ++ TS+DGTRK
Sbjct: 18 FRAKQ-LQRWIHQFGVSDFDQMTD----LAKSLRDKLKTRAEVRAPAIISDHTSTDGTRK 72
Query: 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQA 252
L + G +ETV IP R T+CVS+Q GCA+NC+FC TG+ G R+LT AEI+ Q
Sbjct: 73 WLVDVGQGNAVETVFIP-EENRGTLCVSTQAGCAVNCRFCSTGKQGFNRNLTVAEIIGQL 131
Query: 253 VFARRLLSSEVG---------SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRK 303
A L G ITNVV MGMGEPL N E + A +M+ + S R+
Sbjct: 132 WMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPTVTALRLMLDDNAYGLSRRR 191
Query: 304 VTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363
VT+STSG+VP + + E ALAVSL+A+ D +R+ ++P+NRK+ L L+ + L F
Sbjct: 192 VTLSTSGVVPMIDKLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRELMLACKRYLEF 251
Query: 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ----GIPCKINLISFNPHCGSQFTPTTDE 419
+ FEY ML GVND+ A+ L+ LV+ IPCK NLI FNP S + +
Sbjct: 252 APRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNLIPFNPFPESGLKRSHNP 311
Query: 420 KMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQ 470
++ F IL AG +R +RGDD AACGQL G ++ RV E+ Q
Sbjct: 312 RIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLA--GEVK-DRTRVQERMQ 359
>gi|417320649|ref|ZP_12107192.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus 10329]
gi|328472598|gb|EGF43461.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus 10329]
Length = 375
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 192/327 (58%), Gaps = 13/327 (3%)
Query: 132 AFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191
AFR Q +M W +G D + D + +NK ++ L E +A ++ + SSDGT
Sbjct: 28 AFRADQ-VMKWIYHFGVDDF----DNMTNINKKLREKLQHKCEIKAPTVAEAQHSSDGTI 82
Query: 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQ 251
K + D V ETV IP R T+CVSSQVGCA+ C+FC T + G R+L +EI+ Q
Sbjct: 83 KWAMKVGDQDV-ETVYIP-EEDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQ 140
Query: 252 AVFARRL--LSSEVGS--ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS 307
A R L E G ITNVV MGMGEPL N++N+I A IM+ + G S R+VTVS
Sbjct: 141 VWRAAREIGLQKETGRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVS 200
Query: 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK--N 365
TSG+V L Q + + ALA+SL+A D++R+ IMPIN ++ + + ++R + N
Sbjct: 201 TSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRWDIQDFLASVRRYIASSNAN 260
Query: 366 NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425
KV EYV+L VND D A+ L L++ PCKINLI FNP+ GS + ++ ++ F+
Sbjct: 261 RGKVTVEYVLLDHVNDDMDHARELAELMKETPCKINLIPFNPYPGSPYKKPSNSRIDRFQ 320
Query: 426 NILAGAGCTVFLRLSRGDDQMAACGQL 452
L TV +R +RGDD AACGQL
Sbjct: 321 KTLMQYEHTVTVRKTRGDDIDAACGQL 347
>gi|205829850|sp|Q3SNT2.2|RLMN_NITWN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 397
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 189/330 (57%), Gaps = 19/330 (5%)
Query: 137 QALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILFM 196
Q L W + G +A E+ ++KD + L +H + SSDGTRK L
Sbjct: 51 QQLWHWMYVRGARTFA----EMTSVSKDMRAELEKHVTLDRPEVVAEQISSDGTRKWLLR 106
Query: 197 LDDG------LVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVE 250
L G +E V IP R T+CVSSQVGC +NC FC+TG L R+LTA EIV
Sbjct: 107 LPSGDDLEKPHEVECVYIP-ETDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTAGEIVG 165
Query: 251 QAVFARRLLSSEVGS--------ITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPR 302
Q + AR L+ +TN+V MGMGEPL+N + V I+ +G+ S R
Sbjct: 166 QIMVARDRLNDWADRETPHGNRLVTNIVMMGMGEPLYNFDAVRDGLLIVADNEGIGISKR 225
Query: 303 KVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362
++T+STSG+VP + + E LA+SL+A DE+R+ ++P+NRKY + L++ R+
Sbjct: 226 RITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELRDELVPLNRKYPIAELMQACRDYPA 285
Query: 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMI 422
N ++ FEYVML GVNDS DDA+RL+ L+ GI KINLI FNP G+++ + +++
Sbjct: 286 ASNAKRITFEYVMLKGVNDSLDDARRLVKLLNGIHAKINLIPFNPWPGTRYECSDWDQIE 345
Query: 423 EFRNILAGAGCTVFLRLSRGDDQMAACGQL 452
+F + AG + +R RG D +AACGQL
Sbjct: 346 KFSEYVFNAGYSSPVRTPRGRDILAACGQL 375
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,363,833,732
Number of Sequences: 23463169
Number of extensions: 308206124
Number of successful extensions: 820556
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3836
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 803413
Number of HSP's gapped (non-prelim): 4146
length of query: 477
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 331
effective length of database: 8,933,572,693
effective search space: 2957012561383
effective search space used: 2957012561383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)