Query 011810
Match_columns 477
No_of_seqs 337 out of 2649
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14461 ribosomal RNA large s 100.0 1.6E-94 3.4E-99 737.4 40.0 342 111-456 5-365 (371)
2 PRK14465 ribosomal RNA large s 100.0 1.9E-87 4.1E-92 685.0 39.2 337 112-455 3-341 (342)
3 PRK14459 ribosomal RNA large s 100.0 3.8E-87 8.3E-92 688.6 41.8 338 114-455 22-371 (373)
4 COG0820 Predicted Fe-S-cluster 100.0 1E-87 2.3E-92 679.0 36.6 340 113-456 1-343 (349)
5 PRK14466 ribosomal RNA large s 100.0 1.5E-86 3.2E-91 677.5 39.1 338 112-458 3-340 (345)
6 PRK11194 ribosomal RNA large s 100.0 2.5E-85 5.5E-90 676.6 40.5 339 113-456 5-350 (372)
7 PRK14462 ribosomal RNA large s 100.0 3.9E-85 8.5E-90 671.2 39.2 340 112-458 1-353 (356)
8 PRK14467 ribosomal RNA large s 100.0 6.8E-85 1.5E-89 669.0 38.7 336 114-456 2-342 (348)
9 TIGR00048 radical SAM enzyme, 100.0 1.9E-84 4.2E-89 668.7 41.8 344 111-458 4-348 (355)
10 PRK14457 ribosomal RNA large s 100.0 8.2E-84 1.8E-88 660.7 40.7 334 114-456 2-343 (345)
11 PRK14454 ribosomal RNA large s 100.0 2.8E-83 6E-88 656.8 39.6 336 114-456 2-339 (342)
12 PRK14455 ribosomal RNA large s 100.0 7.4E-83 1.6E-87 657.2 40.7 344 110-457 7-351 (356)
13 PRK14460 ribosomal RNA large s 100.0 2.1E-82 4.5E-87 653.1 41.0 341 114-457 2-346 (354)
14 PRK14463 ribosomal RNA large s 100.0 3E-82 6.6E-87 650.7 40.6 341 112-461 3-343 (349)
15 PRK14470 ribosomal RNA large s 100.0 3.4E-82 7.3E-87 646.7 38.9 331 116-455 1-334 (336)
16 PRK14456 ribosomal RNA large s 100.0 7.9E-82 1.7E-86 650.6 41.0 340 112-455 16-365 (368)
17 PRK14464 ribosomal RNA large s 100.0 4.5E-81 9.7E-86 637.5 33.8 333 119-465 1-339 (344)
18 PRK14453 chloramphenicol/florf 100.0 2.5E-80 5.3E-85 635.5 39.3 331 118-457 4-344 (347)
19 PRK14468 ribosomal RNA large s 100.0 3.6E-80 7.8E-85 634.4 40.2 333 115-458 3-336 (343)
20 PRK14469 ribosomal RNA large s 100.0 3.2E-79 7E-84 628.4 40.1 336 114-457 2-339 (343)
21 PRK11145 pflA pyruvate formate 100.0 7E-31 1.5E-35 257.6 23.9 212 195-436 13-245 (246)
22 TIGR01290 nifB nitrogenase cof 99.9 4E-26 8.7E-31 242.0 24.3 204 213-431 24-258 (442)
23 COG1180 PflA Pyruvate-formate 99.9 6.6E-26 1.4E-30 225.1 22.5 218 195-442 27-252 (260)
24 TIGR02493 PFLA pyruvate format 99.9 1.7E-24 3.6E-29 210.6 25.8 206 196-431 9-235 (235)
25 TIGR02494 PFLE_PFLC glycyl-rad 99.9 2.9E-25 6.4E-30 223.4 18.7 208 195-432 7-295 (295)
26 PRK00164 moaA molybdenum cofac 99.9 1.2E-24 2.7E-29 222.4 23.5 231 215-464 17-279 (331)
27 PRK10076 pyruvate formate lyas 99.9 2E-24 4.3E-29 208.6 22.4 182 239-437 15-211 (213)
28 PRK13762 tRNA-modifying enzyme 99.9 5.1E-23 1.1E-27 210.3 23.6 252 159-435 5-295 (322)
29 TIGR03821 AblA_like_1 lysine-2 99.9 5.4E-23 1.2E-27 210.1 20.0 235 185-442 69-314 (321)
30 PLN02951 Molybderin biosynthes 99.9 3.2E-22 6.9E-27 208.3 25.1 231 215-464 58-320 (373)
31 COG2896 MoaA Molybdenum cofact 99.9 1E-21 2.2E-26 198.5 22.2 230 215-464 11-271 (322)
32 TIGR02668 moaA_archaeal probab 99.9 2.1E-21 4.6E-26 196.0 23.1 231 215-465 10-268 (302)
33 PRK13361 molybdenum cofactor b 99.9 8.4E-21 1.8E-25 194.5 24.2 230 216-464 15-275 (329)
34 TIGR02666 moaA molybdenum cofa 99.9 1.1E-20 2.4E-25 193.5 24.1 231 216-464 11-278 (334)
35 TIGR02495 NrdG2 anaerobic ribo 99.9 4.1E-20 9E-25 174.3 21.2 177 195-404 8-189 (191)
36 COG0731 Fe-S oxidoreductases [ 99.9 3.3E-20 7.2E-25 185.5 20.8 205 223-435 32-248 (296)
37 TIGR03278 methan_mark_10 putat 99.8 1.2E-18 2.5E-23 182.7 24.1 198 222-436 6-248 (404)
38 PRK05301 pyrroloquinoline quin 99.8 1.6E-17 3.4E-22 173.1 25.1 193 215-428 16-218 (378)
39 TIGR03470 HpnH hopanoid biosyn 99.8 2.7E-17 5.9E-22 168.0 25.1 233 216-473 29-286 (318)
40 TIGR02109 PQQ_syn_pqqE coenzym 99.8 3.9E-17 8.5E-22 168.8 23.7 193 215-428 7-209 (358)
41 COG2100 Predicted Fe-S oxidore 99.8 3E-17 6.5E-22 163.4 19.6 172 212-397 104-284 (414)
42 smart00729 Elp3 Elongator prot 99.7 1.1E-16 2.4E-21 149.3 19.7 188 216-412 2-196 (216)
43 TIGR03822 AblA_like_2 lysine-2 99.7 1.6E-15 3.5E-20 155.2 24.8 216 200-442 76-308 (321)
44 PRK13758 anaerobic sulfatase-m 99.7 1.9E-15 4.2E-20 156.7 24.1 194 222-428 12-221 (370)
45 TIGR00238 KamA family protein. 99.7 1.5E-15 3.2E-20 156.1 20.8 217 200-442 101-331 (331)
46 COG1313 PflX Uncharacterized F 99.7 1.7E-15 3.6E-20 149.3 17.6 197 214-435 120-331 (335)
47 TIGR03820 lys_2_3_AblA lysine- 99.7 1.4E-14 3.1E-19 151.9 25.8 214 200-441 96-325 (417)
48 TIGR03365 Bsubt_queE 7-cyano-7 99.7 7.8E-15 1.7E-19 144.2 22.3 151 179-377 4-161 (238)
49 PRK13745 anaerobic sulfatase-m 99.7 9.7E-15 2.1E-19 154.1 23.4 179 216-407 14-205 (412)
50 PF04055 Radical_SAM: Radical 99.6 1.7E-14 3.7E-19 129.3 17.4 155 220-393 2-166 (166)
51 COG0641 AslB Arylsulfatase reg 99.6 3.1E-14 6.6E-19 148.5 21.4 171 225-409 18-196 (378)
52 cd01335 Radical_SAM Radical SA 99.6 4E-14 8.7E-19 130.1 18.8 176 221-414 3-187 (204)
53 COG1509 KamA Lysine 2,3-aminom 99.6 7.9E-14 1.7E-18 141.6 18.0 218 202-443 101-331 (369)
54 COG0535 Predicted Fe-S oxidore 99.6 5.3E-13 1.1E-17 135.6 23.6 178 214-410 18-200 (347)
55 TIGR02491 NrdG anaerobic ribon 99.5 3.4E-14 7.3E-19 130.8 10.1 122 195-345 8-146 (154)
56 PRK07094 biotin synthase; Prov 99.5 2.2E-12 4.7E-17 131.8 23.3 190 221-429 45-244 (323)
57 COG5014 Predicted Fe-S oxidore 99.5 4.9E-13 1.1E-17 123.2 15.5 156 222-397 48-213 (228)
58 PRK09240 thiH thiamine biosynt 99.5 7.7E-12 1.7E-16 130.6 23.6 191 221-428 80-285 (371)
59 TIGR00433 bioB biotin syntheta 99.4 3.4E-11 7.3E-16 121.2 24.9 187 222-429 36-236 (296)
60 PF13353 Fer4_12: 4Fe-4S singl 99.4 1.6E-12 3.4E-17 116.0 9.6 102 199-325 2-114 (139)
61 PRK06256 biotin synthase; Vali 99.4 1.2E-10 2.7E-15 119.5 23.4 202 222-443 65-279 (336)
62 TIGR01125 MiaB-like tRNA modif 99.4 1.1E-10 2.4E-15 124.0 23.0 183 215-412 135-331 (430)
63 PRK08508 biotin synthase; Prov 99.3 3.2E-10 6.9E-15 114.1 22.1 203 222-444 14-229 (279)
64 PRK14338 (dimethylallyl)adenos 99.3 4.9E-10 1.1E-14 120.2 23.3 185 213-412 153-351 (459)
65 PRK14862 rimO ribosomal protei 99.3 2.7E-10 5.9E-15 121.5 21.0 182 214-412 138-342 (440)
66 TIGR02351 thiH thiazole biosyn 99.3 2.8E-10 6.1E-15 118.7 20.6 190 221-427 79-283 (366)
67 PRK05481 lipoyl synthase; Prov 99.2 2.1E-09 4.5E-14 108.8 23.8 195 221-434 59-265 (289)
68 TIGR02826 RNR_activ_nrdG3 anae 99.2 1.5E-10 3.3E-15 105.9 11.3 88 221-324 21-112 (147)
69 PRK15108 biotin synthase; Prov 99.2 4.7E-09 1E-13 108.8 23.6 182 222-424 50-246 (345)
70 TIGR00089 RNA modification enz 99.2 2E-09 4.4E-14 114.3 21.4 184 214-412 138-335 (429)
71 PRK05660 HemN family oxidoredu 99.2 6.6E-09 1.4E-13 108.8 24.9 201 224-434 15-234 (378)
72 TIGR03471 HpnJ hopanoid biosyn 99.2 5.2E-09 1.1E-13 112.5 24.6 178 216-411 197-381 (472)
73 PRK11121 nrdG anaerobic ribonu 99.2 2E-10 4.4E-15 105.8 11.5 104 196-323 10-124 (154)
74 TIGR00539 hemN_rel putative ox 99.2 6.3E-09 1.4E-13 108.2 24.1 199 224-434 9-227 (360)
75 PF13394 Fer4_14: 4Fe-4S singl 99.2 4.8E-11 1E-15 104.0 6.8 83 222-313 5-92 (119)
76 PRK09249 coproporphyrinogen II 99.2 8.1E-09 1.7E-13 110.6 25.1 201 224-434 58-281 (453)
77 TIGR03551 F420_cofH 7,8-dideme 99.2 1.8E-09 4E-14 111.5 19.3 162 219-398 43-222 (343)
78 PRK14332 (dimethylallyl)adenos 99.2 6.7E-09 1.5E-13 111.1 23.9 182 215-412 154-347 (449)
79 PLN02389 biotin synthase 99.2 6.8E-09 1.5E-13 108.7 23.3 184 222-427 90-291 (379)
80 PRK08446 coproporphyrinogen II 99.1 7.6E-09 1.6E-13 107.3 23.2 197 225-434 10-222 (350)
81 TIGR02026 BchE magnesium-proto 99.1 4.6E-09 9.9E-14 113.8 22.4 179 217-411 195-381 (497)
82 TIGR01579 MiaB-like-C MiaB-lik 99.1 6.1E-09 1.3E-13 110.2 22.8 180 215-412 138-334 (414)
83 PRK14334 (dimethylallyl)adenos 99.1 9.6E-09 2.1E-13 109.7 24.2 183 213-412 136-333 (440)
84 PRK05799 coproporphyrinogen II 99.1 1.4E-08 3E-13 106.0 24.8 196 224-434 12-230 (374)
85 PRK06245 cofG FO synthase subu 99.1 3.4E-09 7.4E-14 109.1 19.2 191 219-428 16-235 (336)
86 PRK12928 lipoyl synthase; Prov 99.1 1.3E-08 2.9E-13 103.0 22.9 195 222-434 67-273 (290)
87 KOG2876 Molybdenum cofactor bi 99.1 7.3E-11 1.6E-15 115.4 6.2 226 215-458 11-265 (323)
88 PRK14326 (dimethylallyl)adenos 99.1 1.6E-08 3.4E-13 109.7 24.0 184 214-412 156-353 (502)
89 PRK13347 coproporphyrinogen II 99.1 3E-08 6.4E-13 106.3 25.5 200 225-434 60-282 (453)
90 PRK14331 (dimethylallyl)adenos 99.1 1.3E-08 2.7E-13 108.6 22.6 181 214-412 145-341 (437)
91 TIGR00423 radical SAM domain p 99.1 1.1E-08 2.5E-13 104.2 21.0 162 219-398 9-188 (309)
92 PRK08599 coproporphyrinogen II 99.1 5.9E-08 1.3E-12 101.4 26.5 199 224-434 10-231 (377)
93 PRK14330 (dimethylallyl)adenos 99.1 1.5E-08 3.2E-13 108.0 22.2 184 214-412 139-336 (434)
94 COG0602 NrdG Organic radical a 99.1 2.7E-10 5.9E-15 110.3 8.1 85 213-313 21-111 (212)
95 TIGR00538 hemN oxygen-independ 99.1 3.4E-08 7.3E-13 105.9 24.9 202 223-434 57-281 (455)
96 TIGR00510 lipA lipoate synthas 99.1 2.7E-08 5.8E-13 101.3 22.8 196 221-434 69-276 (302)
97 PRK14328 (dimethylallyl)adenos 99.1 1.6E-08 3.5E-13 107.9 22.1 183 214-412 146-343 (439)
98 PRK14340 (dimethylallyl)adenos 99.1 2.2E-08 4.7E-13 107.1 22.8 184 213-412 147-344 (445)
99 PRK14337 (dimethylallyl)adenos 99.1 2.9E-08 6.3E-13 106.2 23.7 183 214-412 147-345 (446)
100 PRK05628 coproporphyrinogen II 99.1 5.8E-08 1.3E-12 101.5 25.4 202 224-434 11-239 (375)
101 PRK06267 hypothetical protein; 99.1 3.3E-08 7.1E-13 102.7 23.3 186 222-429 34-231 (350)
102 TIGR03699 mena_SCO4550 menaqui 99.1 1.7E-08 3.7E-13 104.1 20.8 194 222-428 48-262 (340)
103 TIGR01574 miaB-methiolase tRNA 99.1 2.2E-08 4.9E-13 106.8 22.3 184 213-412 143-343 (438)
104 PRK14325 (dimethylallyl)adenos 99.0 2.4E-08 5.2E-13 106.6 22.4 183 214-412 146-345 (444)
105 PRK14339 (dimethylallyl)adenos 99.0 3.1E-08 6.6E-13 105.3 22.9 184 213-412 125-326 (420)
106 PRK08207 coproporphyrinogen II 99.0 1.3E-07 2.8E-12 102.3 27.3 204 223-435 171-399 (488)
107 TIGR01578 MiaB-like-B MiaB-lik 99.0 2.2E-08 4.7E-13 106.3 21.1 183 214-412 132-329 (420)
108 PRK14336 (dimethylallyl)adenos 99.0 3.8E-08 8.3E-13 104.5 22.8 184 213-412 122-320 (418)
109 COG0621 MiaB 2-methylthioadeni 99.0 2.3E-08 5E-13 105.9 20.4 186 212-412 141-341 (437)
110 TIGR01212 radical SAM protein, 99.0 9.1E-08 2E-12 97.4 23.5 196 228-437 39-257 (302)
111 PRK14335 (dimethylallyl)adenos 99.0 8.7E-08 1.9E-12 102.8 24.1 183 214-412 151-354 (455)
112 PRK14327 (dimethylallyl)adenos 99.0 8E-08 1.7E-12 104.3 23.9 184 213-412 210-408 (509)
113 PRK14329 (dimethylallyl)adenos 99.0 9.4E-08 2E-12 102.9 23.5 184 214-412 167-369 (467)
114 PRK14333 (dimethylallyl)adenos 99.0 8.2E-08 1.8E-12 102.8 22.8 183 215-412 148-351 (448)
115 PRK08208 coproporphyrinogen II 99.0 1.2E-07 2.6E-12 101.1 23.4 203 223-434 47-266 (430)
116 PLN02428 lipoic acid synthase 98.9 3.1E-07 6.8E-12 95.0 23.7 197 222-434 109-316 (349)
117 PRK07379 coproporphyrinogen II 98.9 6.1E-07 1.3E-11 94.8 25.8 203 223-434 18-246 (400)
118 COG2108 Uncharacterized conser 98.9 2.2E-08 4.8E-13 100.9 13.8 153 222-404 35-200 (353)
119 TIGR01210 conserved hypothetic 98.9 2.1E-06 4.5E-11 88.0 27.3 206 220-436 20-250 (313)
120 COG1964 Predicted Fe-S oxidore 98.8 8.4E-08 1.8E-12 100.3 15.0 153 232-406 78-241 (475)
121 PRK06582 coproporphyrinogen II 98.8 2.2E-06 4.8E-11 90.3 25.2 200 223-434 19-241 (390)
122 PRK05904 coproporphyrinogen II 98.8 1.6E-06 3.4E-11 90.3 23.7 197 225-435 16-230 (353)
123 PRK08898 coproporphyrinogen II 98.8 2.7E-06 5.8E-11 89.8 24.8 199 225-434 29-248 (394)
124 TIGR03700 mena_SCO4494 putativ 98.8 9.7E-07 2.1E-11 91.7 21.1 170 219-406 52-243 (351)
125 COG0502 BioB Biotin synthase a 98.7 2.2E-06 4.7E-11 88.0 22.4 202 222-444 58-273 (335)
126 PRK09057 coproporphyrinogen II 98.7 2.9E-06 6.4E-11 89.0 23.9 198 225-434 14-234 (380)
127 PRK09058 coproporphyrinogen II 98.7 3.3E-06 7E-11 90.6 24.7 201 225-434 71-295 (449)
128 PRK06294 coproporphyrinogen II 98.7 1.9E-06 4.2E-11 90.1 22.3 194 225-434 16-234 (370)
129 PRK08445 hypothetical protein; 98.7 6.6E-07 1.4E-11 93.0 18.7 160 222-398 49-225 (348)
130 PRK09613 thiH thiamine biosynt 98.7 3.8E-06 8.3E-11 90.3 24.9 204 222-440 91-320 (469)
131 TIGR03550 F420_cofG 7,8-dideme 98.7 5E-07 1.1E-11 92.8 17.1 188 221-425 10-228 (322)
132 COG1625 Fe-S oxidoreductase, r 98.7 4.4E-07 9.6E-12 94.4 15.6 162 268-437 81-255 (414)
133 PRK07360 FO synthase subunit 2 98.6 2.1E-06 4.6E-11 89.9 19.5 167 222-406 67-256 (371)
134 PRK08629 coproporphyrinogen II 98.6 1.1E-05 2.4E-10 86.2 23.5 190 225-428 62-265 (433)
135 TIGR03279 cyano_FeS_chp putati 98.6 6.2E-06 1.3E-10 87.2 20.7 121 308-434 124-263 (433)
136 COG1533 SplB DNA repair photol 98.6 4.5E-06 9.8E-11 84.9 18.6 166 219-398 33-213 (297)
137 PRK00955 hypothetical protein; 98.6 3.2E-06 6.9E-11 93.2 18.7 184 214-411 291-522 (620)
138 COG1032 Fe-S oxidoreductase [E 98.5 4E-06 8.6E-11 89.1 17.7 189 216-413 199-401 (490)
139 PRK08444 hypothetical protein; 98.5 8.8E-06 1.9E-10 84.7 19.7 185 220-425 54-267 (353)
140 PRK01254 hypothetical protein; 98.4 2.1E-05 4.5E-10 86.9 20.3 184 215-409 372-599 (707)
141 PRK05927 hypothetical protein; 98.4 1.9E-05 4E-10 82.3 18.0 193 222-427 52-267 (350)
142 PTZ00413 lipoate synthase; Pro 98.4 0.00012 2.6E-09 76.3 23.1 197 222-434 156-364 (398)
143 PRK09234 fbiC FO synthase; Rev 98.2 0.00012 2.6E-09 84.1 21.5 167 221-405 532-720 (843)
144 PRK05926 hypothetical protein; 98.2 6.1E-05 1.3E-09 79.0 17.3 158 222-398 75-250 (370)
145 TIGR01211 ELP3 histone acetylt 98.1 0.00057 1.2E-08 74.7 22.6 198 223-430 76-331 (522)
146 COG0635 HemN Coproporphyrinoge 98.0 0.002 4.3E-08 68.7 25.1 202 223-434 42-267 (416)
147 COG1856 Uncharacterized homolo 98.0 0.00055 1.2E-08 66.4 18.0 191 217-430 12-216 (275)
148 PRK09234 fbiC FO synthase; Rev 97.9 0.00053 1.1E-08 78.9 19.6 188 222-428 78-300 (843)
149 COG1243 ELP3 Histone acetyltra 97.6 0.0058 1.3E-07 65.0 19.3 115 304-425 187-318 (515)
150 COG1060 ThiH Thiamine biosynth 97.5 0.0044 9.5E-08 65.1 17.7 188 222-427 66-281 (370)
151 COG2516 Biotin synthase-relate 97.5 0.0032 7E-08 64.0 15.8 215 216-446 30-272 (339)
152 COG1244 Predicted Fe-S oxidore 97.4 0.053 1.1E-06 55.6 23.1 200 222-433 54-282 (358)
153 COG1242 Predicted Fe-S oxidore 97.2 0.037 8E-07 55.6 19.1 193 228-438 45-263 (312)
154 KOG1160 Fe-S oxidoreductase [E 97.2 0.0041 8.8E-08 65.6 12.7 196 222-430 290-513 (601)
155 COG0320 LipA Lipoate synthase 96.9 0.037 8E-07 55.5 15.8 195 222-434 77-282 (306)
156 COG1031 Uncharacterized Fe-S o 96.8 0.15 3.2E-06 54.5 20.0 190 213-412 180-410 (560)
157 cd03174 DRE_TIM_metallolyase D 96.0 0.32 6.8E-06 47.9 15.9 180 240-443 13-203 (265)
158 KOG2672 Lipoate synthase [Coen 94.7 1.7 3.6E-05 44.1 15.8 192 222-435 118-326 (360)
159 COG4277 Predicted DNA-binding 93.9 2.3 5E-05 43.5 15.2 240 198-450 37-311 (404)
160 KOG2900 Biotin synthase [Coenz 91.3 1.1 2.3E-05 44.7 8.7 161 222-406 91-265 (380)
161 KOG4355 Predicted Fe-S oxidore 88.0 27 0.00059 37.1 16.1 173 218-412 190-384 (547)
162 cd01973 Nitrogenase_VFe_beta_l 77.9 19 0.00041 39.0 10.9 31 373-404 165-195 (454)
163 cd01966 Nitrogenase_NifN_1 Nit 76.3 26 0.00057 37.4 11.4 116 271-404 62-191 (417)
164 TIGR02932 vnfK_nitrog V-contai 76.0 21 0.00046 38.7 10.6 114 271-404 70-199 (457)
165 KOG2492 CDK5 activator-binding 70.0 2.5 5.5E-05 44.9 1.7 56 213-274 218-274 (552)
166 PRK14477 bifunctional nitrogen 68.8 35 0.00076 40.4 11.0 115 271-404 552-678 (917)
167 cd01965 Nitrogenase_MoFe_beta_ 66.7 51 0.0011 35.2 10.9 117 269-404 61-189 (428)
168 TIGR02931 anfK_nitrog Fe-only 66.7 42 0.00092 36.4 10.4 30 374-404 173-202 (461)
169 PRK14476 nitrogenase molybdenu 64.8 42 0.00091 36.4 9.9 117 269-404 72-202 (455)
170 cd01974 Nitrogenase_MoFe_beta 64.2 42 0.00091 36.0 9.7 116 271-404 66-194 (435)
171 TIGR01286 nifK nitrogenase mol 63.3 57 0.0012 36.1 10.7 117 269-404 122-254 (515)
172 PRK08091 ribulose-phosphate 3- 58.9 1.9E+02 0.0041 28.6 15.6 100 313-437 82-182 (228)
173 cd03466 Nitrogenase_NifN_2 Nit 56.5 1.4E+02 0.0031 32.0 12.1 113 271-404 65-188 (429)
174 PF08902 DUF1848: Domain of un 55.3 1.7E+02 0.0036 29.7 11.5 106 324-436 75-199 (266)
175 KOG0781 Signal recognition par 54.4 96 0.0021 34.2 10.1 104 353-471 365-493 (587)
176 KOG2535 RNA polymerase II elon 53.7 3E+02 0.0065 29.2 14.5 85 304-395 225-314 (554)
177 TIGR01285 nifN nitrogenase mol 52.9 80 0.0017 34.0 9.5 116 271-404 72-201 (432)
178 TIGR00854 pts-sorbose PTS syst 52.0 1.1E+02 0.0023 28.3 8.9 59 382-443 84-147 (151)
179 PF03830 PTSIIB_sorb: PTS syst 51.0 80 0.0017 29.0 7.9 84 349-443 60-147 (151)
180 COG0296 GlgB 1,4-alpha-glucan 50.0 40 0.00087 38.2 6.8 74 382-455 163-252 (628)
181 cd01967 Nitrogenase_MoFe_alpha 49.6 1.8E+02 0.0039 30.5 11.5 116 269-403 67-192 (406)
182 PF14824 Sirohm_synth_M: Siroh 49.2 20 0.00043 24.2 2.6 18 303-320 6-23 (30)
183 cd00001 PTS_IIB_man PTS_IIB, P 48.1 1.4E+02 0.003 27.5 9.0 59 382-443 83-146 (151)
184 COG0148 Eno Enolase [Carbohydr 45.8 3.5E+02 0.0077 29.1 12.4 122 326-455 236-387 (423)
185 cd05015 SIS_PGI_1 Phosphogluco 44.7 1.7E+02 0.0037 26.7 9.2 68 265-338 19-90 (158)
186 PRK00035 hemH ferrochelatase; 41.7 4E+02 0.0088 27.3 15.3 113 267-395 190-321 (333)
187 smart00642 Aamy Alpha-amylase 41.0 1.2E+02 0.0026 28.1 7.5 54 384-437 19-88 (166)
188 cd01971 Nitrogenase_VnfN_like 39.2 3.5E+02 0.0075 28.9 11.7 112 272-404 68-193 (427)
189 PF06415 iPGM_N: BPG-independe 38.5 2.4E+02 0.0053 27.8 9.5 79 351-433 14-95 (223)
190 cd06840 PLPDE_III_Bif_AspK_Dap 38.0 4.7E+02 0.01 27.3 12.3 171 265-455 80-265 (368)
191 PF05853 DUF849: Prokaryotic p 36.6 4.6E+02 0.0099 26.4 16.7 163 242-430 22-196 (272)
192 PRK14057 epimerase; Provisiona 36.2 4.6E+02 0.01 26.4 15.9 99 314-437 90-196 (254)
193 cd04885 ACT_ThrD-I Tandem C-te 35.8 1.1E+02 0.0023 23.7 5.5 54 381-435 7-66 (68)
194 cd01972 Nitrogenase_VnfE_like 34.6 2.6E+02 0.0057 29.8 9.9 113 272-404 71-199 (426)
195 PRK07328 histidinol-phosphatas 34.4 4.7E+02 0.01 25.9 17.7 77 244-334 19-117 (269)
196 cd01968 Nitrogenase_NifE_I Nit 34.4 3.8E+02 0.0082 28.4 11.1 115 268-402 65-189 (410)
197 PF11823 DUF3343: Protein of u 33.4 64 0.0014 25.6 3.9 21 384-404 12-32 (73)
198 PF00070 Pyr_redox: Pyridine n 33.2 1.5E+02 0.0033 23.3 6.1 49 386-437 11-59 (80)
199 TIGR02090 LEU1_arch isopropylm 33.0 5.9E+02 0.013 26.6 18.5 166 240-430 16-181 (363)
200 TIGR02631 xylA_Arthro xylose i 32.8 6.2E+02 0.013 26.8 15.2 46 243-298 32-83 (382)
201 cd04908 ACT_Bt0572_1 N-termina 32.6 70 0.0015 24.5 3.9 55 381-436 10-65 (66)
202 PRK11425 PTS system N-acetylga 32.6 3.4E+02 0.0075 25.1 9.1 59 382-443 85-148 (157)
203 PF07587 PSD1: Protein of unkn 32.0 72 0.0016 32.0 4.8 52 121-173 3-62 (266)
204 PRK11858 aksA trans-homoaconit 31.6 6.4E+02 0.014 26.6 20.1 178 240-442 20-200 (378)
205 cd03174 DRE_TIM_metallolyase D 31.5 2.4E+02 0.0052 27.3 8.4 86 243-335 108-200 (265)
206 PRK14478 nitrogenase molybdenu 31.0 4.3E+02 0.0094 28.8 11.0 64 373-437 194-267 (475)
207 cd00316 Oxidoreductase_nitroge 30.8 5.3E+02 0.012 26.7 11.4 69 374-442 156-234 (399)
208 PRK15088 PTS system mannose-sp 30.6 2.7E+02 0.0059 28.9 8.9 116 316-443 181-310 (322)
209 PRK09756 PTS system N-acetylga 30.2 4.5E+02 0.0097 24.3 11.8 59 382-443 88-151 (158)
210 PF00834 Ribul_P_3_epim: Ribul 30.2 3.4E+02 0.0074 26.1 9.0 137 267-437 29-169 (201)
211 cd01320 ADA Adenosine deaminas 29.8 5.9E+02 0.013 25.6 11.3 82 352-439 112-193 (325)
212 TIGR01259 comE comEA protein. 29.4 91 0.002 27.5 4.5 57 112-172 58-117 (120)
213 PRK00035 hemH ferrochelatase; 29.2 2.1E+02 0.0046 29.3 7.9 25 267-292 6-30 (333)
214 COG1509 KamA Lysine 2,3-aminom 28.4 2.3E+02 0.0051 30.0 7.8 114 348-469 141-266 (369)
215 PF00148 Oxidored_nitro: Nitro 28.2 1E+02 0.0022 32.2 5.5 108 282-404 60-178 (398)
216 PRK12344 putative alpha-isopro 28.0 2.1E+02 0.0045 31.8 8.0 86 241-335 117-211 (524)
217 cd01977 Nitrogenase_VFe_alpha 27.6 5.6E+02 0.012 27.2 10.9 62 374-436 166-237 (415)
218 PRK15063 isocitrate lyase; Pro 27.5 2.6E+02 0.0056 30.3 8.2 81 349-437 263-344 (428)
219 TIGR01278 DPOR_BchB light-inde 27.1 6.4E+02 0.014 27.7 11.5 61 382-442 173-243 (511)
220 PRK07535 methyltetrahydrofolat 26.3 6.7E+02 0.014 25.1 12.2 55 242-309 21-77 (261)
221 PRK00694 4-hydroxy-3-methylbut 25.6 4.3E+02 0.0092 29.9 9.6 110 310-443 46-169 (606)
222 TIGR01861 ANFD nitrogenase iro 25.3 2.7E+02 0.0059 30.8 8.2 61 375-436 207-277 (513)
223 cd04906 ACT_ThrD-I_1 First of 24.4 2.7E+02 0.0058 22.6 6.2 55 381-437 10-71 (85)
224 TIGR00426 competence protein C 24.4 2.2E+02 0.0047 22.1 5.4 59 111-172 5-66 (69)
225 PRK09389 (R)-citramalate synth 24.4 2.7E+02 0.0059 30.5 8.0 87 242-335 106-196 (488)
226 TIGR01282 nifD nitrogenase mol 24.2 5.9E+02 0.013 27.7 10.5 29 373-402 210-238 (466)
227 TIGR01283 nifE nitrogenase mol 23.7 7.2E+02 0.016 26.8 11.0 69 373-442 200-278 (456)
228 PRK01076 L-rhamnose isomerase; 23.5 3.9E+02 0.0085 28.8 8.5 120 240-383 67-194 (419)
229 TIGR02660 nifV_homocitr homoci 23.4 3E+02 0.0064 28.9 7.8 87 242-335 105-195 (365)
230 PF06627 DUF1153: Protein of u 23.4 48 0.001 28.0 1.4 31 114-144 56-89 (90)
231 PF14871 GHL6: Hypothetical gl 23.2 1.6E+02 0.0035 26.4 5.0 62 386-447 2-72 (132)
232 PRK14706 glycogen branching en 23.2 2E+02 0.0044 32.7 6.9 54 384-437 168-235 (639)
233 TIGR01430 aden_deam adenosine 23.2 7.9E+02 0.017 24.8 11.4 86 348-439 103-192 (324)
234 CHL00076 chlB photochlorophyll 22.8 5.8E+02 0.013 28.2 10.2 26 378-404 175-201 (513)
235 TIGR00977 LeuA_rel 2-isopropyl 22.8 4.2E+02 0.0091 29.4 9.1 86 242-335 114-208 (526)
236 PRK11858 aksA trans-homoaconit 22.7 5.8E+02 0.013 26.9 9.8 85 242-335 108-198 (378)
237 COG3444 Phosphotransferase sys 22.6 6.5E+02 0.014 23.6 9.8 107 326-443 31-148 (159)
238 PF10096 DUF2334: Uncharacteri 22.5 4.7E+02 0.01 25.7 8.6 64 374-437 4-73 (243)
239 cd07948 DRE_TIM_HCS Saccharomy 22.4 7.8E+02 0.017 24.5 18.6 179 240-443 16-197 (262)
240 PF07002 Copine: Copine; Inte 22.2 2E+02 0.0043 26.3 5.4 49 231-293 52-100 (146)
241 PRK14705 glycogen branching en 22.1 2.1E+02 0.0045 35.3 6.9 54 384-437 766-833 (1224)
242 PRK02910 light-independent pro 22.0 9.8E+02 0.021 26.3 11.8 64 378-442 170-243 (519)
243 COG1168 MalY Bifunctional PLP- 22.0 1E+03 0.022 25.6 16.1 153 242-437 37-196 (388)
244 cd07939 DRE_TIM_NifV Streptomy 22.0 7.6E+02 0.017 24.2 18.8 178 240-442 14-194 (259)
245 TIGR02079 THD1 threonine dehyd 21.9 7.1E+02 0.015 26.5 10.4 133 282-439 257-399 (409)
246 PRK12435 ferrochelatase; Provi 21.6 3.4E+02 0.0073 28.0 7.6 99 275-395 192-305 (311)
247 TIGR01862 N2-ase-Ialpha nitrog 21.3 9.2E+02 0.02 25.9 11.2 63 374-437 195-267 (443)
248 COG4822 CbiK Cobalamin biosynt 21.2 4.3E+02 0.0093 26.3 7.6 53 385-437 180-234 (265)
249 PF02037 SAP: SAP domain; Int 21.2 78 0.0017 21.7 2.0 20 116-135 1-20 (35)
250 cd01980 Chlide_reductase_Y Chl 21.2 8.1E+02 0.018 26.0 10.7 149 282-443 77-237 (416)
251 cd07940 DRE_TIM_IPMS 2-isoprop 21.1 8.1E+02 0.018 24.2 17.8 166 240-430 14-183 (268)
252 PRK09856 fructoselysine 3-epim 21.0 7.7E+02 0.017 23.9 14.9 46 243-298 13-62 (275)
253 cd07939 DRE_TIM_NifV Streptomy 21.0 6.9E+02 0.015 24.6 9.5 84 242-335 102-192 (259)
254 PF00682 HMGL-like: HMGL-like 21.0 6.9E+02 0.015 23.9 9.4 84 242-335 100-191 (237)
255 COG0160 GabT 4-aminobutyrate a 20.3 2.6E+02 0.0057 30.5 6.7 50 399-453 222-272 (447)
256 PF05913 DUF871: Bacterial pro 20.1 1E+03 0.022 25.1 10.9 150 244-436 12-173 (357)
No 1
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.6e-94 Score=737.43 Aligned_cols=342 Identities=36% Similarity=0.588 Sum_probs=327.3
Q ss_pred CCccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCC-
Q 011810 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG- 189 (477)
Q Consensus 111 ~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dg- 189 (477)
.++.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+||||++|++|+++|.+..+++...+.|.||
T Consensus 5 ~~~~~l~~l~~~el~~~~~~~g~~~fRa~Qi~~wiy~~~--~~~~~~mtnlpk~lR~~L~~~~~i~~l~~~~~~~S~Dg~ 82 (371)
T PRK14461 5 MEQRNLYDLNLAELTELLTAWGQPAFRARQLYRHLYVNL--ADSVLAMTDLPLALRERLTAELPLSTLRLEQVQIGDNGL 82 (371)
T ss_pred cCCcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHccccCHHHHHHHhhccccCCcceEEEEECCCCC
Confidence 467889999999999999999999999999999999999 67999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccC------
Q 011810 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV------ 263 (477)
Q Consensus 190 t~K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~------ 263 (477)
|+||||+++||..||||+||+ .+|+|+|||||+||+|+|.||+||++|+.|||+++||++|+..+.+.++..+
T Consensus 83 T~K~L~~l~DG~~IEtVli~~-~~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~ 161 (371)
T PRK14461 83 TRKALFRLPDGAVVETVLMIY-PDRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKR 161 (371)
T ss_pred eEEEEEEcCCCCEEEEEEEec-CCCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccc
Confidence 999999999999999999998 5899999999999999999999999999999999999999998876653211
Q ss_pred -----CCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHH
Q 011810 264 -----GSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEV 337 (477)
Q Consensus 264 -----~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~ 337 (477)
..|+|||||||||||+|||+|+++++++.++.|++||.|+|||||+|++|.|++|+++. +++|||||||++++.
T Consensus 162 ~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~ 241 (371)
T PRK14461 162 HAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDAL 241 (371)
T ss_pred cccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHH
Confidence 45999999999999999999999999999999999999999999999999999999976 899999999999999
Q ss_pred HhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC------CCeEEEEeecCCCCC
Q 011810 338 RNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI------PCKINLISFNPHCGS 411 (477)
Q Consensus 338 r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l------~~~VnLipynp~~~~ 411 (477)
|++|||+|++|+++++++++++| ..+++++|+|||+||+|+||+++++++|+++++++ +++||||||||+++.
T Consensus 242 R~~lmPin~~ypl~eLl~a~~~y-~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~ 320 (371)
T PRK14461 242 RSELMPVNRRYPIADLMAATRDY-IAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGT 320 (371)
T ss_pred HHHhcCcccCCCHHHHHHHHHHH-HHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCC
Confidence 99999999999999999999995 78999999999999999999999999999999999 789999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCCcccccccccccCC
Q 011810 412 QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456 (477)
Q Consensus 412 ~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~~ 456 (477)
.|++|+.+++++|+++|.++|+.|++|.++|+||+||||||+.++
T Consensus 321 ~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~~ 365 (371)
T PRK14461 321 PLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGRH 365 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccCC
Confidence 999999999999999999999999999999999999999999865
No 2
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.9e-87 Score=685.04 Aligned_cols=337 Identities=34% Similarity=0.593 Sum_probs=320.5
Q ss_pred CccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCce
Q 011810 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191 (477)
Q Consensus 112 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 191 (477)
++.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|.|||+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~fra~Qi~~wiy~~~--~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~ 80 (342)
T PRK14465 3 EKIPLKGRTLKELSEIMVSLGEKKFRAKQIYHGLYVNR--YETWDQFTTFSKEVKEKLEELCSLTELEVVKDLKSVDGTQ 80 (342)
T ss_pred CccCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHhccccHHHHHHHhcccccCCccEEEEEEcCCCcE
Confidence 57789999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccC-CCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEE
Q 011810 192 KILFMLDDGLVIETVVIPCN-RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVV 270 (477)
Q Consensus 192 K~l~~l~DG~~IEtVlip~~-~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIv 270 (477)
||||+++||..||||+||++ .+|.|+|||||+||||+|.||+++++|+.|+++++||++|+..+.+.+. .+++|||
T Consensus 81 K~l~~l~Dg~~iEtV~i~~~~~~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~---~~~~niV 157 (342)
T PRK14465 81 KFTFYSGEGKEFEAVWIPSGDGGRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVG---DRATNVV 157 (342)
T ss_pred EEEEEcCCCCEEEEEEeEecCCCceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcC---CCceEEE
Confidence 99999999999999999985 3589999999999999999999999999999999999999998766542 4699999
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
||||||||+|+|+|+++++++.++.|++++.++|+|+|||+++.+.+|+++. ++.|+|||||++++.|++|||++++|+
T Consensus 158 FmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~ 237 (342)
T PRK14465 158 FMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFP 237 (342)
T ss_pred EEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCC
Confidence 9999999999999999999888888999999999999999999999999754 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHH
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~ 429 (477)
++++++++++ |.+++++++++||+||+|+||++|++++|++++++++++||+|||||. +.+|++|+.+++++|+++|+
T Consensus 238 le~ll~al~~-~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~-~~~~~~ps~e~i~~F~~~L~ 315 (342)
T PRK14465 238 LEELLQAAKD-FTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE-FFGWRRPTDDEVAEFIMLLE 315 (342)
T ss_pred HHHHHHHHHH-HHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC-CCCCCCCCHHHHHHHHHHHH
Confidence 9999999998 578889999999999999999999999999999999999999999996 57899999999999999999
Q ss_pred hCCCeEEecCCCCCcccccccccccC
Q 011810 430 GAGCTVFLRLSRGDDQMAACGQLGNP 455 (477)
Q Consensus 430 ~~Gi~v~vR~s~G~di~aaCGQL~~~ 455 (477)
++|+.|++|.++|+||+||||||+.+
T Consensus 316 ~~Gi~v~~R~~~G~di~aACGqL~~~ 341 (342)
T PRK14465 316 PAGVPILNRRSPGKDIFGACGMLASK 341 (342)
T ss_pred HCCCeEEEeCCCCcChhhcCCccccC
Confidence 99999999999999999999999875
No 3
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.8e-87 Score=688.62 Aligned_cols=338 Identities=36% Similarity=0.532 Sum_probs=321.5
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCC-ceE
Q 011810 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG-TRK 192 (477)
Q Consensus 114 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dg-t~K 192 (477)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..++++..+.|.|| |+|
T Consensus 22 ~~l~~l~~~el~~~~~~~g~~~~ra~Qi~~wiy~~~--~~~~~~mt~l~k~~r~~L~~~~~~~~~~~~~~~~s~dg~t~K 99 (373)
T PRK14459 22 RHLADLTPAERREAVAELGLPAFRAKQLARHYFGRL--TADPAQMTDLPAAAREELAEALFPTLLTPVRTLEADDGTTRK 99 (373)
T ss_pred cCcccCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcC--CCCHHHhcccCHHHHHHHHhhcccCCceEEEEEEcCCCCEEE
Confidence 489999999999999999999999999999999999 67999999999999999999999999999999999999 999
Q ss_pred EEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhccc-----CCCee
Q 011810 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE-----VGSIT 267 (477)
Q Consensus 193 ~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~-----~~~v~ 267 (477)
|||+++||..||||+||+ .+|+|+|||||+||+++|.||+++.+++.|+||++||++|+..+.+++... +.+|+
T Consensus 100 ~l~~l~Dg~~iEtV~i~~-~~~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~ 178 (373)
T PRK14459 100 TLWRLHDGTLVESVLMRY-PDRATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLS 178 (373)
T ss_pred EEEEcCCCCEEEEEEEEE-cCCceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhcccccCCCcee
Confidence 999999999999999998 578999999999999999999999999999999999999999887766432 13599
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHH--hcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCC
Q 011810 268 NVVFMGMGEPLHNVENVIKAANIMVH--EQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPI 344 (477)
Q Consensus 268 nIvF~GmGEPLln~d~vi~~i~~l~~--~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi 344 (477)
|||||||||||+|+|+|+++++.+.+ +.|++|+.|+|+|+|+|+.+.+++|+++. ++.|+||||++|++.|++|||+
T Consensus 179 nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~ 258 (373)
T PRK14459 179 NVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPV 258 (373)
T ss_pred EEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCc
Confidence 99999999999999999999998887 57899999999999999999999999887 7889999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC---CCeEEEEeecCCCCCCCCCCcHHHH
Q 011810 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI---PCKINLISFNPHCGSQFTPTTDEKM 421 (477)
Q Consensus 345 ~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l---~~~VnLipynp~~~~~~~~ps~e~l 421 (477)
|++|+++++++++++ |..+++++|+|||+||+|+||+++++++|+++++++ .++||||||||.++..|++|+.+.+
T Consensus 259 n~~~~l~~ll~a~~~-~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~ 337 (373)
T PRK14459 259 NTRWKVDEVLDAARY-YADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVE 337 (373)
T ss_pred ccCCCHHHHHHHHHH-HHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHH
Confidence 999999999999998 477899999999999999999999999999999999 6899999999999889999999999
Q ss_pred HHHHHHHHhCCCeEEecCCCCCcccccccccccC
Q 011810 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNP 455 (477)
Q Consensus 422 ~~f~~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~ 455 (477)
++|+++|+++|+.|++|.++|+||+||||||+.+
T Consensus 338 ~~F~~~L~~~gi~~tiR~~~G~dI~aACGQL~~~ 371 (373)
T PRK14459 338 REFVRRLRAAGVPCTVRDTRGQEIDGACGQLAAE 371 (373)
T ss_pred HHHHHHHHHCCCeEEeeCCCCcCHhhcCCccccc
Confidence 9999999999999999999999999999999874
No 4
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=1e-87 Score=678.99 Aligned_cols=340 Identities=45% Similarity=0.739 Sum_probs=327.3
Q ss_pred ccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCceE
Q 011810 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192 (477)
Q Consensus 113 ~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K 192 (477)
|.+|.+|+.+|+++|+.++|+++|||+|||+|+|+++ +.+|++|+||||++|++|+++|.+..++++..+.|.|||+|
T Consensus 1 ~~~l~~l~~~~~~~~~~~~g~~~fra~Qi~~W~y~~~--~~~f~~Mtnl~k~~r~~L~~~~~~~~~~~~~~~~s~dGT~K 78 (349)
T COG0820 1 KRNLLDLTRAELAEWLAELGLKKFRAKQLFKWIYQKG--VDDFDEMTDLSKGLRAKLKEAFFINLLKVVEVQESSDGTIK 78 (349)
T ss_pred CcchhhcCHHHHHHHHHhcCccchHHHHHHHHHHHHh--ccCHHHhccccHHHHHHHHHhhccccceEEEEEEcCCCCEE
Confidence 4689999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred EEEE-ecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhccc-CCCeeEEE
Q 011810 193 ILFM-LDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE-VGSITNVV 270 (477)
Q Consensus 193 ~l~~-l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~-~~~v~nIv 270 (477)
|+|+ +.||..||||+||+ .+|+|+|||||+||+++|.||+||+.|+.|||+++||++|++.+.+.++.. ...++|||
T Consensus 79 ~l~~~l~dg~~iEtV~ip~-~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV 157 (349)
T COG0820 79 WLFEVLPDGTMIETVLIPE-KDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVV 157 (349)
T ss_pred EEEEEcCCCCEEEEEEEEe-cCCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEE
Confidence 9999 99999999999998 688999999999999999999999999999999999999999988776543 35799999
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHh-cCCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN-ESNCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~-~~d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
||||||||+|+|+|..+++++.++.|+++|+|+|||||+|+.|.|.++++ ..++.|||||||+++++|+.|+|+|++|+
T Consensus 158 ~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~ 237 (349)
T COG0820 158 FMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYP 237 (349)
T ss_pred EecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999996 45999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHH
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~ 429 (477)
++++++++++ |...++++|++||+|++||||+.+++++|++++++++++||||||||+++.+|..|+.+++++|.+.|.
T Consensus 238 ~e~l~~a~r~-Y~~~t~~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~ 316 (349)
T COG0820 238 IEELLEAIRY-YPEKSGRRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILK 316 (349)
T ss_pred HHHHHHHHHh-hhhccCceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHH
Confidence 9999999998 588899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEecCCCCCcccccccccccCC
Q 011810 430 GAGCTVFLRLSRGDDQMAACGQLGNPG 456 (477)
Q Consensus 430 ~~Gi~v~vR~s~G~di~aaCGQL~~~~ 456 (477)
++|+.++||.++|+||+||||||+.+.
T Consensus 317 ~~gv~~tvR~~~g~DIdaACGQL~~~~ 343 (349)
T COG0820 317 KAGVLVTVRKTRGDDIDAACGQLRGKR 343 (349)
T ss_pred hCCeeEEeccccccccccccchhhhhh
Confidence 999999999999999999999998775
No 5
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.5e-86 Score=677.48 Aligned_cols=338 Identities=38% Similarity=0.640 Sum_probs=322.5
Q ss_pred CccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCce
Q 011810 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191 (477)
Q Consensus 112 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 191 (477)
++.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|.|||+
T Consensus 3 ~~~~l~~l~~~el~~~~~~~g~~~fra~Qi~~wi~~~~--~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~ 80 (345)
T PRK14466 3 PKYPLLGMTLEELQSVAKRLGMPAFAAKQIASWLYDKK--VTSIDEMTNISLAHREKLAEEYEIGAYAPVDEQRSVDGTI 80 (345)
T ss_pred CCcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHHhhhhHHHHHhhcCCeEecCceEEEEEEcCCCeE
Confidence 46789999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEE
Q 011810 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 271 (477)
Q Consensus 192 K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF 271 (477)
||||.+.||..||||+||+ .+|.|+|||||+|||++|.||+++..++.++++++||++|+..+.+. .+++||||
T Consensus 81 K~l~~l~dg~~iEsVlip~-~~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~-----~~i~nIvf 154 (345)
T PRK14466 81 KYLFPVGEGHFVESVYIPE-EDRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER-----DKLTNLVF 154 (345)
T ss_pred EEEEEcCCCCEEEEEEEec-CCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc-----CCCCeEEE
Confidence 9999999999999999998 57999999999999999999999999999999999999999876321 36999999
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHH
Q 011810 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 351 (477)
Q Consensus 272 ~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le 351 (477)
|||||||+|+++|+++++.+.++.|+++|+++|+|+|||+.|.+.++++..+++|++|||+++++.|++|+|++++|+++
T Consensus 155 mGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~ 234 (345)
T PRK14466 155 MGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIK 234 (345)
T ss_pred eeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHH
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011810 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431 (477)
Q Consensus 352 ~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~ 431 (477)
++++++++ |..+++++|++||+||+|+||+++|+++|++++++++++||||||||.++..|++|+.+++++|+++|.++
T Consensus 235 ~l~~al~~-y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~~~ 313 (345)
T PRK14466 235 EIIDLLKN-YDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYLTSH 313 (345)
T ss_pred HHHHHHHH-HHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCCCCCcCCCHHHHHHHHHHHHHC
Confidence 99999999 57889999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred CCeEEecCCCCCcccccccccccCCCC
Q 011810 432 GCTVFLRLSRGDDQMAACGQLGNPGAI 458 (477)
Q Consensus 432 Gi~v~vR~s~G~di~aaCGQL~~~~~~ 458 (477)
|+.|++|.++|+||+||||||+.+..+
T Consensus 314 gi~~tvR~s~G~dI~aACGQL~~~~~~ 340 (345)
T PRK14466 314 GVFTTIRASRGEDIFAACGMLSTAKQE 340 (345)
T ss_pred CCcEEEeCCCCCchhhcCccchhhhhh
Confidence 999999999999999999999876543
No 6
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.5e-85 Score=676.56 Aligned_cols=339 Identities=40% Similarity=0.629 Sum_probs=323.5
Q ss_pred ccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCceE
Q 011810 113 RVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192 (477)
Q Consensus 113 ~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K 192 (477)
+.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|.|||+|
T Consensus 5 ~~~l~~~~~~el~~~~~~~g~~~~ra~qi~~w~y~~~--~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K 82 (372)
T PRK11194 5 KINLLDLNRQQMREFFAELGEKPFRADQVMKWIYHYG--CDDFDEMTNINKVLREKLKEVAEIRAPEVAEEQRSSDGTIK 82 (372)
T ss_pred ccCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhcccccCCcccceEEEcCCCeEE
Confidence 5689999999999999999999999999999999999 67999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhccc----CCCeeE
Q 011810 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSITN 268 (477)
Q Consensus 193 ~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~----~~~v~n 268 (477)
|||+++| ..||||+||+ .+|+|+|||||+||+++|.||+|+.+|+.|++|++||++|+..+.++++.+ +.+++|
T Consensus 83 ~l~~l~D-~~iEsV~~~~-~~~~t~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~n 160 (372)
T PRK11194 83 WAIAVGD-QRVETVYIPE-DDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITN 160 (372)
T ss_pred EEEEcCC-CeEEEEEEEc-CCCeeEEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhccccCCcccce
Confidence 9999999 9999999998 578999999999999999999999999999999999999999988877542 235999
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCC
Q 011810 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348 (477)
Q Consensus 269 IvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~ 348 (477)
||||||||||+|+|+|.++++.+.++.|+++++|+|+|+|+|+.|.++++++..++.|++|||++|++.|++|||++++|
T Consensus 161 vV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~ 240 (372)
T PRK11194 161 VVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDELRDEIVPINKKY 240 (372)
T ss_pred EEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcC---CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHH
Q 011810 349 KLGLLIETLREELHFKNN---YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~---~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~ 425 (477)
+++++++++++| ..+++ ++|+|||+||||+||+++++++|++|+++++++|||+||||.++..|++|+.+++++|+
T Consensus 241 ~l~~ll~a~~~y-~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~~~~~~~ps~e~v~~f~ 319 (372)
T PRK11194 241 NIETFLAAVRRY-LEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFS 319 (372)
T ss_pred cHHHHHHHHHHH-HHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCCCCCCCCCCHHHHHHHH
Confidence 999999999995 66674 79999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHhCCCeEEecCCCCCcccccccccccCC
Q 011810 426 NILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456 (477)
Q Consensus 426 ~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~~ 456 (477)
++|+++|++|++|.++|.||+||||||+.+.
T Consensus 320 ~~L~~~Gi~vtiR~~~G~di~aaCGQL~~~~ 350 (372)
T PRK11194 320 KVLMEYGFTVIVRKTRGDDIDAACGQLAGDV 350 (372)
T ss_pred HHHHHCCCeEEEecCCCCcchhcCcCcHhhh
Confidence 9999999999999999999999999998876
No 7
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.9e-85 Score=671.16 Aligned_cols=340 Identities=37% Similarity=0.641 Sum_probs=319.1
Q ss_pred CccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCce
Q 011810 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191 (477)
Q Consensus 112 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 191 (477)
.|.+|++|+++||++++ .|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..++++..+.|.|||+
T Consensus 1 ~~~~l~~~~~~el~~~~----~~~~ra~qi~~~~~~~~--~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~ 74 (356)
T PRK14462 1 MKKNIYDFTLEELSELL----KPSFRAKQIYQWLYAKY--ATSFDDMKNLPKDLREYLAQEFTLDPLKIVKVEQSKDGSK 74 (356)
T ss_pred CCCccccCCHHHHHHHh----ccchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhhccccCCcceEEEEEcCCCeE
Confidence 36789999999999999 39999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccC------------CCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHh
Q 011810 192 KILFMLDDGLVIETVVIPCN------------RGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLL 259 (477)
Q Consensus 192 K~l~~l~DG~~IEtVlip~~------------~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~ 259 (477)
||||+++||..||||+||++ .+|.|+|||||+||+++|.||+|+.+|+.|++|++||++|+..+.+++
T Consensus 75 K~l~~l~Dg~~iEtV~i~~~~~~~~~~~~~~~~~r~t~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~ 154 (356)
T PRK14462 75 KYLFKLRDGHTVEAVLLKMKDEKIDEEGKILEHAKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDN 154 (356)
T ss_pred EEEEEcCCCCEEEEEEeeccccccccccccccCCCceEeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhh
Confidence 99999999999999999973 268999999999999999999999999999999999999999887765
Q ss_pred cccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHH
Q 011810 260 SSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVR 338 (477)
Q Consensus 260 ~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r 338 (477)
......+.|||||||||||+|+|+++++++.+.++.|+++|+|+|+|+|+|+.+.+++|++.. .+.|++|||+++++.|
T Consensus 155 ~~~~~~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r 234 (356)
T PRK14462 155 NIPYEKRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELR 234 (356)
T ss_pred hccccccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHH
Confidence 432234789999999999999999999999887778999999999999999999999998765 5889999999999999
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcH
Q 011810 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTD 418 (477)
Q Consensus 339 ~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~ 418 (477)
+++||++++|+++++++++++ |..+++++|+|||+||+|+||+++++++|++++++++++||||||||.++..|++|+.
T Consensus 235 ~~l~pv~~~~~l~~ll~~l~~-y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~~~~~~ps~ 313 (356)
T PRK14462 235 SELMPINKAYNIESIIDAVRK-FPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEGSKFERPSL 313 (356)
T ss_pred HHhCCCCccCCHHHHHHHHHH-HHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCCCCCCCCCH
Confidence 999999999999999999998 4678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEecCCCCCcccccccccccCCCC
Q 011810 419 EKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 458 (477)
Q Consensus 419 e~l~~f~~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~~~~ 458 (477)
+++++|+++|+++|+.|++|.++|+||+||||||+.+...
T Consensus 314 e~i~~f~~~l~~~gi~vtvR~~~G~dI~aACGQL~~~~~~ 353 (356)
T PRK14462 314 EDMIKFQDYLNSKGLLCTIRESKGLDISAACGQLREKKLS 353 (356)
T ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhhhcc
Confidence 9999999999999999999999999999999999887644
No 8
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6.8e-85 Score=668.99 Aligned_cols=336 Identities=40% Similarity=0.630 Sum_probs=317.5
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCceEE
Q 011810 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKI 193 (477)
Q Consensus 114 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K~ 193 (477)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++.|.+..+++. .+.+.|||+||
T Consensus 2 ~~l~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~-~~~~~dgt~K~ 78 (348)
T PRK14467 2 ENIKNYNLEELEEFVVELGWEKYRAKQIAKWVYKKK--VTDFDEMTDLSKEDRQLLKENFEFHTLELL-DRVEADDSVKY 78 (348)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhcCcccCCceee-EEEcCCCeEEE
Confidence 478999999999999999999999999999999998 679999999999999999999999999998 66668999999
Q ss_pred EEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec
Q 011810 194 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG 273 (477)
Q Consensus 194 l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G 273 (477)
||+++||..||+|+||+ .+|+|+|||||+||+++|.||+|+.+|+.|++|++||++|+..+.+++.. .++.+|||||
T Consensus 79 l~~~~dg~~vE~V~i~~-~~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~--~~v~~VvfmG 155 (348)
T PRK14467 79 LFKTKDGHTIETVLIKE-RDHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGE--NRIRNVVFMG 155 (348)
T ss_pred EEEcCCCCEEEEEEEEe-CCCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhcc--CCCCeEEEEc
Confidence 99999999999999998 57899999999999999999999999999999999999999988777642 3689999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcH
Q 011810 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKL 350 (477)
Q Consensus 274 mGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~l 350 (477)
|||||+|+|+|+++++.+.++.|+++++|+++|+|||+.+.|.++..+. .+.|++|||+++++.|++|+|+++++++
T Consensus 156 mGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~p~~~~~~l 235 (348)
T PRK14467 156 MGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIMPISKTNTL 235 (348)
T ss_pred cChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhcCCccccCH
Confidence 9999999999999999888889999999999999999999999988653 6789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCCCcHHHHHHHHHHH
Q 011810 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGSQFTPTTDEKMIEFRNIL 428 (477)
Q Consensus 351 e~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~--~~VnLipynp~~~~~~~~ps~e~l~~f~~~L 428 (477)
+++++++++ |..+++++|++||+||||+||+++++++|++++++++ ++|||+||||.++.+|++|+.+++++|+++|
T Consensus 236 ~~l~~~~~~-~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 314 (348)
T PRK14467 236 EELMEVLKQ-YPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKIL 314 (348)
T ss_pred HHHHHHHHH-HHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 999999998 4778999999999999999999999999999999985 6899999999999999999999999999999
Q ss_pred HhCCCeEEecCCCCCcccccccccccCC
Q 011810 429 AGAGCTVFLRLSRGDDQMAACGQLGNPG 456 (477)
Q Consensus 429 ~~~Gi~v~vR~s~G~di~aaCGQL~~~~ 456 (477)
+++|+.|++|.++|+||+||||||+.+.
T Consensus 315 ~~~gi~v~vR~~~G~di~aaCGqL~~~~ 342 (348)
T PRK14467 315 WDNGISTFVRWSKGVDIFGACGQLRKKR 342 (348)
T ss_pred HHCCCcEEEeCCCCcchhhcccchhHhh
Confidence 9999999999999999999999998754
No 9
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=1.9e-84 Score=668.69 Aligned_cols=344 Identities=41% Similarity=0.690 Sum_probs=325.4
Q ss_pred CCccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCc
Q 011810 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGT 190 (477)
Q Consensus 111 ~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt 190 (477)
..+.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++.|.+..++++..+.|.|||
T Consensus 4 ~~~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt 81 (355)
T TIGR00048 4 SPKPSLYDLTLQELRQWLKDLGEKPFRAKQIYKWLYHKG--KDSFDDMTNLSKDLREKLNRVFEIRTPEIAHEQRSVDGT 81 (355)
T ss_pred CCCCCcccCCHHHHHHHHHHcCCCchhHHHHHHHHHHcC--CCCHHHccccCHHHHHHHhhcEEeCCcceeEEEEcCCCe
Confidence 356789999999999999999999999999999999999 679999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEE
Q 011810 191 RKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVV 270 (477)
Q Consensus 191 ~K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIv 270 (477)
+||||+++||..||||+||+ .+|.|+|||+|+|||++|.||+++..|+.++++++||++|+..+..++...+.+++||+
T Consensus 82 ~K~l~~~~dg~~iE~V~i~~-~~~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVv 160 (355)
T TIGR00048 82 IKYLFKLGDGQTIETVLIPE-KDRATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVV 160 (355)
T ss_pred EEEEEEcCCCCEEEEEEEEe-CCCcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEE
Confidence 99999999999999999998 57999999999999999999999999999999999999999988776654445799999
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
||||||||+|+++++++++.+.+..|++|+.++++|+|||+.+.+.+|+++. +++|++|||+++++.|++|+|++++|+
T Consensus 161 fmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~ 240 (355)
T TIGR00048 161 FMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYN 240 (355)
T ss_pred EecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCC
Confidence 9999999999999999999887778999999999999999999999999865 788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHH
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~ 429 (477)
++++++++++ +..+++++|++||+||+|+||+++++++|++++++++++||++||||+++..|++|+.+++++|+++|.
T Consensus 241 l~~ll~~l~~-~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~ 319 (355)
T TIGR00048 241 IETLLAAVRR-YLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLM 319 (355)
T ss_pred HHHHHHHHHH-HHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999998 467889999999999999999999999999999999999999999999998999999999999999999
Q ss_pred hCCCeEEecCCCCCcccccccccccCCCC
Q 011810 430 GAGCTVFLRLSRGDDQMAACGQLGNPGAI 458 (477)
Q Consensus 430 ~~Gi~v~vR~s~G~di~aaCGQL~~~~~~ 458 (477)
+.|+.|++|.++|+||+||||||+.+...
T Consensus 320 ~~gi~v~iR~~~G~di~aaCGqL~~~~~~ 348 (355)
T TIGR00048 320 SYGFTVTIRKSRGDDIDAACGQLRAKDVI 348 (355)
T ss_pred HCCCeEEEeCCCCcchhhcCCcchhhhcc
Confidence 99999999999999999999999876543
No 10
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=8.2e-84 Score=660.74 Aligned_cols=334 Identities=37% Similarity=0.597 Sum_probs=316.0
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHH-HhccccceEeEEeecCCCceE
Q 011810 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSE-HAEFRALSLKDILTSSDGTRK 192 (477)
Q Consensus 114 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~-~~~~~~~~~~~~~~s~Dgt~K 192 (477)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++ .|.+..++++..+.|.|||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~w~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K 79 (345)
T PRK14457 2 KPLLGRSLAELEDWAVAQGQPAFRGRQLHDWLYNKG--VRSLDEISVLPKAWRESLKDDGVPIGRLTIVERSVAPDGTLK 79 (345)
T ss_pred CccccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHcCccCHHHHHHHhhcCccccCceEEEEEEcCCCcEE
Confidence 478999999999999999999999999999999999 67999999999999999999 699999999999999999999
Q ss_pred EEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe
Q 011810 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 272 (477)
Q Consensus 193 ~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~ 272 (477)
|||+++||..||+|+||+ .+|.|+|||||+|||++|.||+++..++.++++++||++|+..+.+++. .++++||||
T Consensus 80 ~l~~l~dg~~iE~v~~~~-~~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~---~~~~~Ivfm 155 (345)
T PRK14457 80 LLLSTEDGEIIETVGIPT-EKRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQ---RRVSHVVFM 155 (345)
T ss_pred EEEEcCCCCEEEEEEEEc-CCCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhc---CCCCEEEEE
Confidence 999999999999999998 5799999999999999999999999999999999999999998876653 368999999
Q ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-------CeEEEEeeCCCCHHHHhhHcCCC
Q 011810 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-------NCALAVSLNATTDEVRNWIMPIN 345 (477)
Q Consensus 273 GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-------d~~LaISL~a~~~e~r~~I~pi~ 345 (477)
||||||+|+++|+++++.+.++ ++++.|+|+|||+|+.+.+++|++.. ++.|++|||+++++.|++|+|++
T Consensus 156 GmGEPlln~~~v~~~i~~l~~~--~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~ 233 (345)
T PRK14457 156 GMGEPLLNIDEVLAAIRCLNQD--LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSA 233 (345)
T ss_pred ecCccccCHHHHHHHHHHHhcc--cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCc
Confidence 9999999999999999987665 56789999999999999999999765 67899999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHH
Q 011810 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425 (477)
Q Consensus 346 ~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~ 425 (477)
++|+++++++++++| ..+++++|++||+||||+||+++++++|++|+++++++|||+||||.++.+|++|+.+++++|+
T Consensus 234 ~~~~l~~l~~~~~~y-~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~ 312 (345)
T PRK14457 234 KNYPIENLLEDCRHY-VAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQ 312 (345)
T ss_pred cCCCHHHHHHHHHHH-HHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHH
Confidence 999999999999984 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEecCCCCCcccccccccccCC
Q 011810 426 NILAGAGCTVFLRLSRGDDQMAACGQLGNPG 456 (477)
Q Consensus 426 ~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~~ 456 (477)
++|+++|+.|++|.++|.||+||||||+.+.
T Consensus 313 ~~L~~~Gi~vtvR~~~G~di~aaCGqL~~~~ 343 (345)
T PRK14457 313 RVLEQRGVAVSVRASRGLDANAACGQLRRNA 343 (345)
T ss_pred HHHHHCCCeEEEeCCCCCchhhccccchhcc
Confidence 9999999999999999999999999998754
No 11
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.8e-83 Score=656.84 Aligned_cols=336 Identities=37% Similarity=0.608 Sum_probs=318.9
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecC-CCceE
Q 011810 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSS-DGTRK 192 (477)
Q Consensus 114 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~-Dgt~K 192 (477)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++.|.+..++++..+.|. |||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~~dgt~k 79 (342)
T PRK14454 2 KNILDFTLEELKEWMKENGEKKFRAKQIFDWIYKKG--VTDFDEMTNIPKNLREKLKENFYIGIPKIVKKLVSKIDGTVK 79 (342)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHhccccHHHHHHHHhceecCCccEEEEEEecCCCeEE
Confidence 478999999999999999999999999999999999 679999999999999999999999999999998885 99999
Q ss_pred EEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe
Q 011810 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 272 (477)
Q Consensus 193 ~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~ 272 (477)
|||+++||..||+|+||+ .++.|+|||||+||+|+|.||+++.+|+.|++|++||++|+.....++. ..+.+||||
T Consensus 80 ~l~~~~dg~~iE~V~i~~-~~~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~---~~~~gvV~m 155 (342)
T PRK14454 80 FLFELEDGNIIESVVMKY-KHGNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIG---ERISNIVLM 155 (342)
T ss_pred EEEEcCCCCEEEEEEEEE-cCCCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhc---CCCCCEEEE
Confidence 999999999999999998 4789999999999999999999999999999999999999999887764 257899999
Q ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHH
Q 011810 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLG 351 (477)
Q Consensus 273 GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le 351 (477)
||||||+|+|++.++++.+.++.|+++|.|+++|+|+|+.|.+.++++.. .+.|++|||+++++.|++++|++++|+++
T Consensus 156 ggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~ 235 (342)
T PRK14454 156 GSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIE 235 (342)
T ss_pred CCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHH
Confidence 99999999999999999877778999999999999999999999999875 67789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011810 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431 (477)
Q Consensus 352 ~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~ 431 (477)
++++++++| ..++++++++||+||+|+||+++++++|+++++++.++|||+||||.++.+|++|+++++++|+++|+++
T Consensus 236 ~l~~~~~~~-~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~~~~~~~~~ps~e~l~~f~~~l~~~ 314 (342)
T PRK14454 236 ELIEACKYY-INKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNEVKENGFKKSSKEKIKKFKNILKKN 314 (342)
T ss_pred HHHHHHHHH-HHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 999999984 6789999999999999999999999999999999989999999999998899999999999999999999
Q ss_pred CCeEEecCCCCCcccccccccccCC
Q 011810 432 GCTVFLRLSRGDDQMAACGQLGNPG 456 (477)
Q Consensus 432 Gi~v~vR~s~G~di~aaCGQL~~~~ 456 (477)
|+.|++|.++|+||+||||||+.+.
T Consensus 315 gi~v~iR~~~G~di~aaCGQL~~~~ 339 (342)
T PRK14454 315 GIETTIRREMGSDINAACGQLRRSY 339 (342)
T ss_pred CCcEEEeCCCCCchhhcCcccchhh
Confidence 9999999999999999999998754
No 12
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.4e-83 Score=657.17 Aligned_cols=344 Identities=36% Similarity=0.631 Sum_probs=325.3
Q ss_pred CCCccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCC
Q 011810 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDG 189 (477)
Q Consensus 110 ~~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dg 189 (477)
+-++.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..++++..+.|.||
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg 84 (356)
T PRK14455 7 ETMKPSIYSLTLDELQEWLVEQGEKKFRATQIWDWLYRKR--VQSFEEMTNLSKDLREKLNDNFVVTTLKTRVKQESKDG 84 (356)
T ss_pred CccCcccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHhcccCHHHHHHHhcccccCCccEEEEEEcCCC
Confidence 3456789999999999999999999999999999999999 67999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEE
Q 011810 190 TRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNV 269 (477)
Q Consensus 190 t~K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nI 269 (477)
|+||||+++||+.||||+||+ .+|.|+|||||+|||++|.||+++.+++.++++++||++|+..+..++...++++++|
T Consensus 85 t~K~l~~~~dg~~ie~V~~~~-~~~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~V 163 (356)
T PRK14455 85 TIKFLFELPDGYLIETVLMRH-EYGNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDETEERVSHI 163 (356)
T ss_pred cEEEEEEcCCCCEEEEEEEEe-cCCceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhcCCCcceE
Confidence 999999999999999999998 5789999999999999999999999999999999999999998877765545679999
Q ss_pred EEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCC
Q 011810 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKY 348 (477)
Q Consensus 270 vF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~ 348 (477)
|||||||||+|++++.++++.+.+..|+++|.++++|+|||+.+.+.++++.. +++|++|||+++++.|+++||+++++
T Consensus 164 v~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~ 243 (356)
T PRK14455 164 VVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAY 243 (356)
T ss_pred EEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCC
Confidence 99999999999999999999877778999999999999999999999999875 78899999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHH
Q 011810 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNIL 428 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L 428 (477)
+++++++++++ +.+..+++++++|+||+|+||+++++++|++|+++++++|||+||||.++..|.+|+.+++.+|+++|
T Consensus 244 ~l~~Il~~l~~-~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L 322 (356)
T PRK14455 244 PLEKLMEAIEY-YIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTL 322 (356)
T ss_pred CHHHHHHHHHH-HHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHH
Confidence 99999999998 46678899999999999999999999999999999999999999999998899999999999999999
Q ss_pred HhCCCeEEecCCCCCcccccccccccCCC
Q 011810 429 AGAGCTVFLRLSRGDDQMAACGQLGNPGA 457 (477)
Q Consensus 429 ~~~Gi~v~vR~s~G~di~aaCGQL~~~~~ 457 (477)
.++|+.|++|.++|+||+||||||+.+..
T Consensus 323 ~~~gi~v~ir~~~g~di~aaCGqL~~~~~ 351 (356)
T PRK14455 323 KKNGVNCTIRREHGTDIDAACGQLRAKER 351 (356)
T ss_pred HHCCCcEEEeCCCCcchhhcCccchhhhh
Confidence 99999999999999999999999987654
No 13
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.1e-82 Score=653.08 Aligned_cols=341 Identities=38% Similarity=0.655 Sum_probs=321.3
Q ss_pred cccCCCCHHHHHHHHH-HCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCceE
Q 011810 114 VLLKGMSFTELQQWVR-SHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRK 192 (477)
Q Consensus 114 ~~~~~l~~~el~~~~~-~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K 192 (477)
.+|++|+++||++++. ++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..++++..+.|.|||+|
T Consensus 2 ~~~~~~~~~~l~~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~K 79 (354)
T PRK14460 2 TNILNLTYPELEAFITAELGEPRFRARQIWQWLWQKG--ARDFDSMTNVSKALRARLAEKAVINWPEVETVQTSSDGTVK 79 (354)
T ss_pred CCcccCCHHHHHHHHHHhcCCCchHHHHHHHHHHHcC--CCCHHHhccccHHHHHHHhcceecCCcceeEEEEcCCCcEE
Confidence 5789999999999999 99999999999999999999 67999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCC--C-eeEE
Q 011810 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG--S-ITNV 269 (477)
Q Consensus 193 ~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~--~-v~nI 269 (477)
|||+++||..||+|+||+..+|+|+|+|+|+|||++|.||+++.+++.|++|++||++|+..+..++...++ . +++|
T Consensus 80 ~l~~~~dg~~iE~V~~p~~~~r~t~CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nI 159 (354)
T PRK14460 80 FLLRLADGALVETVLIPSKSRRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNL 159 (354)
T ss_pred EEEEcCCCCEEEEEEeEcCCCceeEEeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEE
Confidence 999999999999999999654999999999999999999999999999999999999999887777643322 2 8999
Q ss_pred EEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 270 VFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 270 vF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
+||||||||+|+++++++++.+.++.|++++.++++|+|||+.+.+++|.+.+.+.|+||||+++++.|++|+|.+++|+
T Consensus 160 vfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~ 239 (354)
T PRK14460 160 VFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWP 239 (354)
T ss_pred EEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCC
Confidence 99999999999999999999888778999999999999999988999988877688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHH
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~ 429 (477)
++++++++++ |..+++++|++||+||+|+||+++++++|++++++++++||||||||..+..|++|+.+++++|+++|+
T Consensus 240 l~~ll~al~~-~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~ 318 (354)
T PRK14460 240 LDDLIAALKS-YPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLW 318 (354)
T ss_pred HHHHHHHHHH-HHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999998 467888999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hCCCeEEecCCCCCcccccccccccCCC
Q 011810 430 GAGCTVFLRLSRGDDQMAACGQLGNPGA 457 (477)
Q Consensus 430 ~~Gi~v~vR~s~G~di~aaCGQL~~~~~ 457 (477)
++|+.|++|.++|.||+||||||+.+..
T Consensus 319 ~~Gi~vtir~~~G~di~aaCGqL~~~~~ 346 (354)
T PRK14460 319 SKGITAIIRKSKGQDIKAACGQLKAEEL 346 (354)
T ss_pred HCCCeEEEeCCCCCchHhccccchhhhh
Confidence 9999999999999999999999987643
No 14
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3e-82 Score=650.74 Aligned_cols=341 Identities=46% Similarity=0.721 Sum_probs=323.8
Q ss_pred CccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCce
Q 011810 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191 (477)
Q Consensus 112 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 191 (477)
++.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+||||++|+.|+++|.+..+++...+.|.|||+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~ 80 (349)
T PRK14463 3 EKTDIKNLTLQELEAFLAGQGKERFRAKQIFKWLYQRD--ARSFAEMTNLSKDLRAELEETARISNLEPEAVEVSRDGTR 80 (349)
T ss_pred cccccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHhC--CCCHHHhcccCHHHHHhhcCCeeecCcceeEEEEcCCCcE
Confidence 46689999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEE
Q 011810 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 271 (477)
Q Consensus 192 K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF 271 (477)
||||+++||..||+|+||+ .+|.|+|||+|+|||++|.||+++..++.++++++||++|+..+.+. .++++|+|
T Consensus 81 k~l~~~~dg~~iE~V~~~~-~~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~-----~~i~~Ivf 154 (349)
T PRK14463 81 KYLFRLEDGNAVESVLIPD-EDRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRD-----VPVRNIVF 154 (349)
T ss_pred EEEEEcCCCCeEEEEEEEe-cCCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhc-----CCccEEEE
Confidence 9999999999999999998 57899999999999999999999988889999999999999876432 36899999
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHH
Q 011810 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLG 351 (477)
Q Consensus 272 ~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le 351 (477)
|||||||+|+++++++++.+.++.|+++|.++++|+|||+++.+.+++...+++|++|||+++++.|++|||++++++++
T Consensus 155 mG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~ 234 (349)
T PRK14463 155 MGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLA 234 (349)
T ss_pred ecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHH
Confidence 99999999999999999988777899999999999999999999999987788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011810 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431 (477)
Q Consensus 352 ~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~ 431 (477)
++++++++ +...++++|++||+||+|+||+++++++|++++++++++||||||||.++..|++|+.+++++|+++|+++
T Consensus 235 ~l~~a~~~-~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~~ 313 (349)
T PRK14463 235 ELLAACKA-FPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLDK 313 (349)
T ss_pred HHHHHHHH-HHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 99999998 46778899999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCeEEecCCCCCcccccccccccCCCCCCC
Q 011810 432 GCTVFLRLSRGDDQMAACGQLGNPGAIQAP 461 (477)
Q Consensus 432 Gi~v~vR~s~G~di~aaCGQL~~~~~~~~~ 461 (477)
|+.|++|.++|.||+||||||+.+.+..||
T Consensus 314 gi~v~vR~~~G~di~aaCGqL~~~~~~~~~ 343 (349)
T PRK14463 314 HVTVITRSSRGSDISAACGQLKGKLDKAPP 343 (349)
T ss_pred CceEEEeCCCCcchhhccCcccccccCCCC
Confidence 999999999999999999999998887766
No 15
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.4e-82 Score=646.73 Aligned_cols=331 Identities=34% Similarity=0.545 Sum_probs=311.7
Q ss_pred cCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCceEEEE
Q 011810 116 LKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKILF 195 (477)
Q Consensus 116 ~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K~l~ 195 (477)
.++|+++||++++.++|+|+|||+|||+|+|+++ +. |++|+|||+++|+.|++.|.+..++++..+.|.|||+||||
T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~--~~-~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~t~k~l~ 77 (336)
T PRK14470 1 MLHLSGQDSRALARPAGISLEDARRITGAVIGRG--AP-LRSARNVRRSVLDEVDALATPGELRLVERVDAKDGFRKYLF 77 (336)
T ss_pred CCCCCHHHHHHHHHHcCCCcHHHHHHHHHHHhCC--CC-HHHhccCCHHHHHHHhcccccCCceEEEEEEcCCCcEEEEE
Confidence 3689999999999999999999999999999999 67 99999999999999999999999999999999999999999
Q ss_pred EecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC
Q 011810 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG 275 (477)
Q Consensus 196 ~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG 275 (477)
+++||..||||+||+..+|+|+|||+|+|||++|.||+++++++.|+++++||++|+..+.+.. ...+++|||||||
T Consensus 78 ~l~dg~~iE~V~ip~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~---~~~i~nIvfmGmG 154 (336)
T PRK14470 78 ELPDGLRVEAVRIPLFDTHHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADS---ERPITGVVFMGQG 154 (336)
T ss_pred EcCCCCEEEEEeccccCCCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhc---CCCCCEEEEEecC
Confidence 9999999999999964578999999999999999999999999999999999999998765433 2468999999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHH
Q 011810 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354 (477)
Q Consensus 276 EPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~il 354 (477)
|||+|++++.++++.+.+..|++++.++|+|+|||+.|.+++++++. ++.|++||||++++.|++|+|+++++++++++
T Consensus 155 EPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il 234 (336)
T PRK14470 155 EPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELV 234 (336)
T ss_pred ccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHH
Confidence 99999999999999998889999999999999999999999999877 48899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHH--HhCC
Q 011810 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNIL--AGAG 432 (477)
Q Consensus 355 e~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L--~~~G 432 (477)
+++++| .+. +++++++|++|+|+||+++++++|++++++++++||+|||||..+ .|++|+.+++++|+++| +++|
T Consensus 235 ~ai~~~-~~~-~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~~-~~~~p~~~~i~~f~~~l~~~~~g 311 (336)
T PRK14470 235 EAIREH-AAL-RGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDATG-RYRPPDEDEWNAFRDALARELPG 311 (336)
T ss_pred HHHHHH-HHh-CCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCCC-CccCCCHHHHHHHHHHHHHccCC
Confidence 999984 555 889999999999999999999999999999999999999999766 89999999999999999 4889
Q ss_pred CeEEecCCCCCcccccccccccC
Q 011810 433 CTVFLRLSRGDDQMAACGQLGNP 455 (477)
Q Consensus 433 i~v~vR~s~G~di~aaCGQL~~~ 455 (477)
+.|++|.++|+||+||||||+.+
T Consensus 312 ~~~~~R~~~G~di~aaCGqL~~~ 334 (336)
T PRK14470 312 TPVVRRYSGGQDEHAACGMLASR 334 (336)
T ss_pred eEEEEECCCCCChHhccCccccc
Confidence 99999999999999999999874
No 16
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.9e-82 Score=650.64 Aligned_cols=340 Identities=35% Similarity=0.543 Sum_probs=318.9
Q ss_pred CccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeec-----
Q 011810 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTS----- 186 (477)
Q Consensus 112 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s----- 186 (477)
.+.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..++++..+.|
T Consensus 16 ~~~~~~~~~~~el~~~~~~~g~~~~r~~qi~~w~y~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~~~ 93 (368)
T PRK14456 16 ELQNIRNLRRQELTELLARLGEPAWRAAQLHQWLFSHR--ALSFEEMTTLSKPLRRKLAESFAIQPPVTEKHDETMEGSP 93 (368)
T ss_pred CCCCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCHHHhccccHHHHHHHhcceecCCcceEEEEeeccCCC
Confidence 56789999999999999999999999999999999999 68999999999999999999999999999999887
Q ss_pred CCCceEEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcc--cCC
Q 011810 187 SDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSS--EVG 264 (477)
Q Consensus 187 ~Dgt~K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~--~~~ 264 (477)
.|||+||||+++||..||||+||+ .++.|+|||+|+|||++|.||+++.+++.++|+++||++|+..+.+.+.. ...
T Consensus 94 ~dgt~K~l~~l~dg~~iEtV~i~~-~~~~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~~~~~ 172 (368)
T PRK14456 94 AGPTEKLLIKLPDGELVETVLIPG-PERMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAERNRER 172 (368)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEec-CCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhccC
Confidence 577999999999999999999998 68999999999999999999999999999999999999999876554422 124
Q ss_pred CeeEEEEecCCcccCCHHHHHHHHHHHHHh-cCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHc
Q 011810 265 SITNVVFMGMGEPLHNVENVIKAANIMVHE-QGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIM 342 (477)
Q Consensus 265 ~v~nIvF~GmGEPLln~d~vi~~i~~l~~~-~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~ 342 (477)
++++|+||||||||+|+|++.++++.+.+. .+++++.++|+++|||+.+.+++|++.+ ++.|+||||+++++.|++|+
T Consensus 173 ~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~ 252 (368)
T PRK14456 173 GITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRERLM 252 (368)
T ss_pred CccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHHHhc
Confidence 699999999999999999999999988774 7888999999999999999999999987 67899999999999999999
Q ss_pred CCCC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHH
Q 011810 343 PINR-KYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKM 421 (477)
Q Consensus 343 pi~~-~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l 421 (477)
|+++ +|+++++++++++ +..+++.+|+++|+||+|+||+++++++|++|+++++++||+|||||.++.+|.+|+.+.+
T Consensus 253 P~~~~~~~l~~l~~~i~~-~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i 331 (368)
T PRK14456 253 PQAARDYPLDELREALIG-YASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTR 331 (368)
T ss_pred cccCCCCCHHHHHHHHHH-HHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHH
Confidence 9985 8999999999998 4778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEecCCCCCcccccccccccC
Q 011810 422 IEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNP 455 (477)
Q Consensus 422 ~~f~~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~ 455 (477)
++|+++|+++|+.|++|.++|+||+||||||+.+
T Consensus 332 ~~F~~~L~~~Gi~vtvR~~~G~di~aACGQL~~~ 365 (368)
T PRK14456 332 ERFRDRLLDAGLQVTVRKSYGTTINAACGQLAAR 365 (368)
T ss_pred HHHHHHHHHCCCcEEeeCCCCcchhhcCCcchhc
Confidence 9999999999999999999999999999999875
No 17
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.5e-81 Score=637.52 Aligned_cols=333 Identities=32% Similarity=0.509 Sum_probs=311.6
Q ss_pred CCHHHHHHHHHHCCCCcchHHHHH-HHHhcCCCccCC--chhhcCCCHHHHHHHHHH-hccccceEeEEee-cCCCceEE
Q 011810 119 MSFTELQQWVRSHAFRPGQALMLW-KRLYGDDIWAHC--TDELEGLNKDFKKMLSEH-AEFRALSLKDILT-SSDGTRKI 193 (477)
Q Consensus 119 l~~~el~~~~~~~g~~~~ra~qi~-~~l~~~~~~~~~--~~~~~~l~~~~r~~L~~~-~~~~~~~~~~~~~-s~Dgt~K~ 193 (477)
|+++||++++.++|+|+|||+||| +|+|+++ +.+ |++|+|||+++|++|++. |.+..+++...+. |.|||+||
T Consensus 1 ~~~~el~~~~~~~g~~~~ra~Qi~~~w~~~~~--~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~~~s~dgt~K~ 78 (344)
T PRK14464 1 MRIQDLRQRLRALGAKPCHEGRILRAWLQGLP--LDTRRQRAEDFLPLALREALPALEAELDGLARLRSEHPGEDGSARL 78 (344)
T ss_pred CCHHHHHHHHHHcCCChhHHHHHHHHHHHhCC--CCccchhhhccCCHHHHHHHHhcCeeccCcceEEEEEecCCCcEEE
Confidence 678999999999999999999999 5999999 568 799999999999999999 8999999777766 68999999
Q ss_pred EEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec
Q 011810 194 LFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG 273 (477)
Q Consensus 194 l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G 273 (477)
||+++||..||||+||+ .|+|||||+||+++|.||+++.+++.|+++++||++|+..+.+. ..+++|||||
T Consensus 79 l~~l~Dg~~iEtV~i~~----~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~-----~~i~nIVfmG 149 (344)
T PRK14464 79 LVELADGQMVESVLLPR----DGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRR-----RAVKKVVFMG 149 (344)
T ss_pred EEEcCCCCEEEEEEecC----CcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhc-----CCCCEEEEec
Confidence 99999999999999985 59999999999999999999999999999999999999987552 4699999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011810 274 MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGL 352 (477)
Q Consensus 274 mGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ 352 (477)
|||||+|+|+++++++.+.+. .+|+.++++|||.|+++.+.+|..+. .+.|++|||+++++.|++|+|++++|++++
T Consensus 150 mGEPl~N~d~vl~ai~~l~~~--~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~e 227 (344)
T PRK14464 150 MGEPAHNLDNVLEAIDLLGTE--GGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEE 227 (344)
T ss_pred cCcccCCHHHHHHHHHHhhch--hcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHH
Confidence 999999999999999987766 36789999999999999999999854 678899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhCC
Q 011810 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAG 432 (477)
Q Consensus 353 ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~G 432 (477)
+++++++ |.++++++|++||+|++|+||+++++++|++++++++++||+|||||+++..|.+|+.+++++|++.|.++|
T Consensus 228 l~~a~~~-~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~~g 306 (344)
T PRK14464 228 LVELGEA-YARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHRRG 306 (344)
T ss_pred HHHHHHH-HHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHHCC
Confidence 9999998 478889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCcccccccccccCCCCCCCccCC
Q 011810 433 CTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRV 465 (477)
Q Consensus 433 i~v~vR~s~G~di~aaCGQL~~~~~~~~~~~~~ 465 (477)
+.|++|.++|+||+||||||+.+...++|.-|-
T Consensus 307 i~~tiR~~~G~di~aACGqL~~~~~~~~~~~~~ 339 (344)
T PRK14464 307 VLTKVRNSAGQDVDGGCGQLRARAAKAAAVRRI 339 (344)
T ss_pred ceEEEECCCCCchhhcCcchhhhhccccccccc
Confidence 999999999999999999999998888887653
No 18
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=2.5e-80 Score=635.49 Aligned_cols=331 Identities=30% Similarity=0.493 Sum_probs=306.8
Q ss_pred CCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHh--ccccceEeEEeecCCCceEEEE
Q 011810 118 GMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHA--EFRALSLKDILTSSDGTRKILF 195 (477)
Q Consensus 118 ~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~--~~~~~~~~~~~~s~Dgt~K~l~ 195 (477)
.++++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++.| .+..+++...+.| |||+||||
T Consensus 4 ~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~~s-dgt~K~l~ 80 (347)
T PRK14453 4 KTKYGKMKQILSNLKLPDYRYEQITKAIFKQR--IDNFEDMHILPKALRESLINEFGKNVLSVIPVFEQDS-KQVTKVLF 80 (347)
T ss_pred cCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcC--CCCHHHhccCCHHHHHHHHHHHhhccCCceeEEEEec-CCeEEEEE
Confidence 47899999999999999999999999999999 6799999999999999999998 6888888888887 89999999
Q ss_pred EecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC
Q 011810 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG 275 (477)
Q Consensus 196 ~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG 275 (477)
+++||..||||+||++.+|.|+|||||+||||+|.||+++.+++.|+||++||++|+..+.. .+.++++|+|||||
T Consensus 81 ~l~dg~~iE~V~i~~~~~~~t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~----~~~~i~~IvfmGmG 156 (347)
T PRK14453 81 ELTDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYL----NGHRLDSISFMGMG 156 (347)
T ss_pred EcCCCCEEEEEEEeecCCceeEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHh----cCCCcceEEEeecC
Confidence 99999999999999865569999999999999999999999999999999999999986532 12469999999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHH
Q 011810 276 EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354 (477)
Q Consensus 276 EPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~il 354 (477)
|||+|+ +++++++.+.+..+++++.|+++|+|+|+.|.++++.+.. .+.|++|||+++++.|++++|+++++++++++
T Consensus 157 EPLln~-~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll 235 (347)
T PRK14453 157 EALANP-ELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVM 235 (347)
T ss_pred CccCCH-HHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHH
Confidence 999995 5899999888888999999999999999999999998865 67888999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC-----CCeEEEEeecCCCCC--CCCCCcHHHHHHHHHH
Q 011810 355 ETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI-----PCKINLISFNPHCGS--QFTPTTDEKMIEFRNI 427 (477)
Q Consensus 355 e~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l-----~~~VnLipynp~~~~--~~~~ps~e~l~~f~~~ 427 (477)
+++++| ..+++.+|++||+||+|+||+++++++|++|++++ .++||||||||.++. ++++|+.+++++|+++
T Consensus 236 ~~~~~~-l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~ 314 (347)
T PRK14453 236 KTLDEH-IRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCST 314 (347)
T ss_pred HHHHHH-HHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHH
Confidence 999995 67788999999999999999999999999999987 479999999999765 4999999999999999
Q ss_pred HHhCCCeEEecCCCCCcccccccccccCCC
Q 011810 428 LAGAGCTVFLRLSRGDDQMAACGQLGNPGA 457 (477)
Q Consensus 428 L~~~Gi~v~vR~s~G~di~aaCGQL~~~~~ 457 (477)
|+++|+.|++|.++|+||+||||||+.+..
T Consensus 315 L~~~Gi~vtiR~~~G~di~aaCGqL~~~~~ 344 (347)
T PRK14453 315 LKSAGISVTVRTQFGSDISAACGQLYGNYE 344 (347)
T ss_pred HHHCCCcEEEeCCCCCchhhccccchhhhc
Confidence 999999999999999999999999987643
No 19
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.6e-80 Score=634.36 Aligned_cols=333 Identities=38% Similarity=0.582 Sum_probs=311.3
Q ss_pred ccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCceEEE
Q 011810 115 LLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTRKIL 194 (477)
Q Consensus 115 ~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~K~l 194 (477)
.|.+++++|| |+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|+++|.+..+++...+.|.|||+|||
T Consensus 3 ~~~~~~~~~~-------~~~~~r~~qi~~~~~~~~--~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 73 (343)
T PRK14468 3 PLLELHPDAL-------PGEGYRRAQLAEWLYAQG--ARTFDAMTNLPKALRAELAREYRLSPFREVETFRSQDGSVKYL 73 (343)
T ss_pred ccccCCHHHc-------CCCchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhhccccCCceEEEEEEcCCCcEEEE
Confidence 5789999998 999999999999999999 6799999999999999999999999999999999999999999
Q ss_pred EEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC
Q 011810 195 FMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 274 (477)
Q Consensus 195 ~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm 274 (477)
|+++||..||+|+||+ .+|.|+|||+|+|||++|.||+++.+++.+++|++||++|+..+....+....++++|+||||
T Consensus 74 ~~~~dg~~iE~V~i~~-~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~Gm 152 (343)
T PRK14468 74 FTLLDGKQTEAVYMPY-LDRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGM 152 (343)
T ss_pred EECCCCCEEEEEEEEe-cCCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEecc
Confidence 9999999999999998 589999999999999999999999999999999999999998765432211245899999999
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHH
Q 011810 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLL 353 (477)
Q Consensus 275 GEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~i 353 (477)
||||+|+++++++++.+.++.|+++++++++++|||+.+.++++++.. ++.|++|||+++++.|++|+|++++++++++
T Consensus 153 GEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~l 232 (343)
T PRK14468 153 GEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEI 232 (343)
T ss_pred CccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHH
Confidence 999999999999999887888999999999999999999999999876 6789999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhCCC
Q 011810 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGC 433 (477)
Q Consensus 354 le~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~Gi 433 (477)
++++++ +.++++++|++||+|++|+||+++++++|+++++++.++||+|||||+.+..+++|+.+++++|+++|.++|+
T Consensus 233 l~~l~~-~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi 311 (343)
T PRK14468 233 MAAVRH-YQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWEGSPFQSSPRAQILAFADVLERRGV 311 (343)
T ss_pred HHHHHH-HHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999998 4778889999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred eEEecCCCCCcccccccccccCCCC
Q 011810 434 TVFLRLSRGDDQMAACGQLGNPGAI 458 (477)
Q Consensus 434 ~v~vR~s~G~di~aaCGQL~~~~~~ 458 (477)
.|++|.++|.||+||||||+.+..+
T Consensus 312 ~vtiR~~~g~di~aaCGqL~~~~~~ 336 (343)
T PRK14468 312 PVSVRWSRGRDVGAACGQLALKRPG 336 (343)
T ss_pred eEEEeCCCCcchhhcCCccccCCcc
Confidence 9999999999999999999876433
No 20
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3.2e-79 Score=628.38 Aligned_cols=336 Identities=35% Similarity=0.572 Sum_probs=315.8
Q ss_pred cccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecC-CCceE
Q 011810 114 VLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSS-DGTRK 192 (477)
Q Consensus 114 ~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~-Dgt~K 192 (477)
.+|++|+++||++++.++|+|+|||+|||+|+|+++ +.+|++|+|||+++|+.|++.|.+..++++..+.|. |||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~s~~d~t~k 79 (343)
T PRK14469 2 KNILDLSYEELVSEITELGLEKYRADQILDWIYKKK--VFNFDEMTNLSKDHRALLSEHFSIPFPKLLDKQVSKIDGTTK 79 (343)
T ss_pred CCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcC--CCCHHHhccccHHHHHHHhhccccCCceEEEEEeccCCCeEE
Confidence 468999999999999999999999999999999999 679999999999999999999999999999999885 99999
Q ss_pred EEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe
Q 011810 193 ILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 272 (477)
Q Consensus 193 ~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~ 272 (477)
|||+++||..||+|+||+ ++|.|+|||+|+|||++|.||+++..++.|+++++||++|+..+.+... .++++|+||
T Consensus 80 ~l~~~~dg~~ie~v~~~~-~~~~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~---~~v~~Vvf~ 155 (343)
T PRK14469 80 FLWELEDGNTIESVMLFH-PDRITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEK---KKVGNVVYM 155 (343)
T ss_pred EEEEcCCCCEEEEEEEec-CCCeEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhcc---CCcCeEEEE
Confidence 999999999999999998 6899999999999999999999999999999999999999987654432 468999999
Q ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHH
Q 011810 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLG 351 (477)
Q Consensus 273 GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le 351 (477)
||||||+|+++|.++++.+.+..|.+++.++|+++|||+.+.+++|++.+ ++.|+||||+++++.|++++|++++++++
T Consensus 156 GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~ 235 (343)
T PRK14469 156 GMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIE 235 (343)
T ss_pred ccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHH
Confidence 99999999999999999888888888889999999999989999999876 77899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011810 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431 (477)
Q Consensus 352 ~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~ 431 (477)
++++++++ +..+++.+++++|++|+|+||+.+++++|++++++++++||++||||..+ .+++|+.+++++|+++|+++
T Consensus 236 ~Il~~l~~-~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~~-~~~~ps~e~l~~f~~~l~~~ 313 (343)
T PRK14469 236 EIINAVKI-YQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTVP-GLEKPSRERIERFKEILLKN 313 (343)
T ss_pred HHHHHHHH-HHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCCc-cCCCCCHHHHHHHHHHHHHC
Confidence 99999998 46777889999999999999999999999999999999999999999866 68999999999999999999
Q ss_pred CCeEEecCCCCCcccccccccccCCC
Q 011810 432 GCTVFLRLSRGDDQMAACGQLGNPGA 457 (477)
Q Consensus 432 Gi~v~vR~s~G~di~aaCGQL~~~~~ 457 (477)
|+.|++|.++|.||+||||||+.+..
T Consensus 314 gi~vtvr~~~g~di~aaCGqL~~~~~ 339 (343)
T PRK14469 314 GIEAEIRREKGSDIEAACGQLRRRNL 339 (343)
T ss_pred CCeEEEeCCCCcchhhcCccchhhhh
Confidence 99999999999999999999987643
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.98 E-value=7e-31 Score=257.64 Aligned_cols=212 Identities=25% Similarity=0.385 Sum_probs=174.4
Q ss_pred EEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCC---CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEE
Q 011810 195 FMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 271 (477)
Q Consensus 195 ~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~---g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF 271 (477)
|.+.||++++++++ ..|||++|.||+++.. ...+.++++|+++++.....++.. ....|+|
T Consensus 13 ~~~~dg~g~~~~~f-------------~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~---~~~~V~~ 76 (246)
T PRK11145 13 CGTVDGPGIRFITF-------------FQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNA---SGGGVTA 76 (246)
T ss_pred EeeECCCCeEEEEE-------------ECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhc---CCCeEEE
Confidence 56789999998876 6999999999998753 345779999999999876544321 2346889
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch----HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCC
Q 011810 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347 (477)
Q Consensus 272 ~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~----p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~ 347 (477)
+| ||||+|++.+.++++.+ ++.|+. ++++|||+. +.++++++..|. +.+|+|+.+++.|+++++.+
T Consensus 77 sG-GEPll~~~~~~~l~~~~-k~~g~~-----i~l~TNG~~~~~~~~~~~ll~~~d~-v~islk~~~~e~~~~~~g~~-- 146 (246)
T PRK11145 77 SG-GEAILQAEFVRDWFRAC-KKEGIH-----TCLDTNGFVRRYDPVIDELLDVTDL-VMLDLKQMNDEIHQNLVGVS-- 146 (246)
T ss_pred eC-ccHhcCHHHHHHHHHHH-HHcCCC-----EEEECCCCCCcchHHHHHHHHhCCE-EEECCCcCChhhcccccCCC--
Confidence 99 99999999888998865 467885 999999985 345666665564 46999999999999998864
Q ss_pred CcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeecCCCCC------------CC
Q 011810 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGS------------QF 413 (477)
Q Consensus 348 ~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~--~~VnLipynp~~~~------------~~ 413 (477)
.+.++++++. ..+.+.++++++++++|+||++++++++++|+++++ .+++++|||+.+.. ++
T Consensus 147 --~~~~l~~i~~--l~~~g~~v~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 222 (246)
T PRK11145 147 --NHRTLEFARY--LAKRNQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGEEYKLDGV 222 (246)
T ss_pred --hHHHHHHHHH--HHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCCcccccCC
Confidence 3678888885 466788999999999999999999999999999885 48999999987532 46
Q ss_pred CCCcHHHHHHHHHHHHhCCCeEE
Q 011810 414 TPTTDEKMIEFRNILAGAGCTVF 436 (477)
Q Consensus 414 ~~ps~e~l~~f~~~L~~~Gi~v~ 436 (477)
++|+.++++++++++++.|++++
T Consensus 223 ~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 223 KPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCCCHHHHHHHHHHHHHcCCccc
Confidence 88999999999999999998764
No 22
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.95 E-value=4e-26 Score=241.98 Aligned_cols=204 Identities=18% Similarity=0.360 Sum_probs=164.2
Q ss_pred CceeEEEEecCccCCCCCCCCCCC-------CC-CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGR-------MG-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENV 284 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~-------~g-~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~v 284 (477)
+|..+- .+.|||++|.||.+.. .+ ..+.||++|+++++....+++ .++..|+|+|+||||+|++++
T Consensus 24 ~r~~~~--vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~----~~~~~V~iaG~GEPLl~~e~~ 97 (442)
T TIGR01290 24 ARMHLA--VAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEI----PQLSVVGIAGPGDPLANIGKT 97 (442)
T ss_pred CEEEEe--cCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhc----CCCCEEEEecCCCcccCcccc
Confidence 454444 4899999999999752 23 246799999999998876554 357889999999999999989
Q ss_pred HHHHHHHHHhc-CCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCC----CCCCc--------
Q 011810 285 IKAANIMVHEQ-GLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPI----NRKYK-------- 349 (477)
Q Consensus 285 i~~i~~l~~~~-Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi----~~~~~-------- 349 (477)
++.++.+.+.. |+ +++|+|||+. +.+++|++.+-..+.||||+.+++.|++|+|. +++|+
T Consensus 98 ~~~l~~~~~~~~~i-----~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il 172 (442)
T TIGR01290 98 FQTLELVARQLPDV-----KLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLL 172 (442)
T ss_pred HHHHHHHHHhcCCC-----eEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHH
Confidence 99998776653 56 4999999984 56888888753366799999999999998763 22232
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCC--CCCC-----CCCcHHHH
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHC--GSQF-----TPTTDEKM 421 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~--~~~~-----~~ps~e~l 421 (477)
++.++++++. +.+.|..+++++++|||+|| +++.+++++++++++ .+|++||+|.+ +..| ++|+.+++
T Consensus 173 ~e~~l~~l~~--l~~~G~~v~v~~vlIpGiND--~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l 248 (442)
T TIGR01290 173 IERQLEGLEK--LTERGILVKVNSVLIPGIND--EHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDEL 248 (442)
T ss_pred HHHHHHHHHH--HHhCCCeEEEEEEeeCCcCH--HHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHH
Confidence 5677899996 45678899999999999998 799999999999985 69999999876 4443 88999999
Q ss_pred HHHHHHHHhC
Q 011810 422 IEFRNILAGA 431 (477)
Q Consensus 422 ~~f~~~L~~~ 431 (477)
+++++.+++.
T Consensus 249 ~~~~~~~~~~ 258 (442)
T TIGR01290 249 AALRDRLEMG 258 (442)
T ss_pred HHHHHHHHhh
Confidence 9999988763
No 23
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.6e-26 Score=225.12 Aligned_cols=218 Identities=23% Similarity=0.385 Sum_probs=172.9
Q ss_pred EEecCCCe-eEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCC-CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe
Q 011810 195 FMLDDGLV-IETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 272 (477)
Q Consensus 195 ~~l~DG~~-IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~-~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~ 272 (477)
+.+.||++ +..+++ .+|||++|.||+|+.... ++..+.+++..+++....+.. ..+..|+|+
T Consensus 27 ~~~~d~~g~~~~~vf-------------~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~---~~~~gvt~S 90 (260)
T COG1180 27 KPLVDGPGSIRLSVF-------------LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYS---ESGGGVTFS 90 (260)
T ss_pred cCCcCCCCcEEEEEE-------------eCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhc---CCCCEEEEE
Confidence 45677777 666665 799999999999998654 356666666655554444332 367789999
Q ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcH
Q 011810 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKL 350 (477)
Q Consensus 273 GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~l 350 (477)
| |||+++++++.+.++ .+++.|+. +++.|||+. +.+++|++..|.. .++||+.+++.|+++++.+ .
T Consensus 91 G-GEP~~q~e~~~~~~~-~ake~Gl~-----~~l~TnG~~~~~~~~~l~~~~D~v-~~DlK~~~~~~y~~~tg~~----~ 158 (260)
T COG1180 91 G-GEPTLQAEFALDLLR-AAKERGLH-----VALDTNGFLPPEALEELLPLLDAV-LLDLKAFDDELYRKLTGAD----N 158 (260)
T ss_pred C-CcchhhHHHHHHHHH-HHHHCCCc-----EEEEcCCCCCHHHHHHHHhhcCeE-EEeeccCChHHHHHHhCCC----c
Confidence 9 999999999999999 56777996 999999986 3456788877766 5999999999999999765 3
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCCC-CcHHHHHHHHHH
Q 011810 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGSQFTP-TTDEKMIEFRNI 427 (477)
Q Consensus 351 e~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~--~~VnLipynp~~~~~~~~-ps~e~l~~f~~~ 427 (477)
+.++++++. ..+.+..++++++++||+||++++++++++|++++. ..+.+.||+|.....+.+ +..++++++.+.
T Consensus 159 ~~vl~~~~~--l~~~g~~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~ 236 (260)
T COG1180 159 EPVLENLEL--LADLGVHVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLPPTPVETLEEAKKL 236 (260)
T ss_pred HHHHHHHHH--HHcCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccCCCcHHHHHHhHhh
Confidence 889999996 466899999999999999999999999999999764 479999999998766644 557888888888
Q ss_pred HHhCCCe-EEecCCCC
Q 011810 428 LAGAGCT-VFLRLSRG 442 (477)
Q Consensus 428 L~~~Gi~-v~vR~s~G 442 (477)
.++.|.. +.+....|
T Consensus 237 a~~~~~~~v~~~~~~~ 252 (260)
T COG1180 237 AKEEGLKFVYIGNVPG 252 (260)
T ss_pred hHHHHHHhHhhhcccC
Confidence 8887664 33333333
No 24
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.94 E-value=1.7e-24 Score=210.63 Aligned_cols=206 Identities=21% Similarity=0.345 Sum_probs=163.3
Q ss_pred EecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe
Q 011810 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 272 (477)
Q Consensus 196 ~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~ 272 (477)
..-||+++..+++ +.|||++|.||+++... ..+.++++++++.+.....++.. ....|+|+
T Consensus 9 ~~~~g~g~~~~v~-------------~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~---~~~~I~~~ 72 (235)
T TIGR02493 9 GTVDGPGIRFVVF-------------MQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKA---SGGGVTFS 72 (235)
T ss_pred cccCCCCceEEEE-------------ECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhc---CCCeEEEe
Confidence 3456766655544 57999999999976432 24579999999998876554321 22468899
Q ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCc----hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCC
Q 011810 273 GMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL----VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKY 348 (477)
Q Consensus 273 GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi----~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~ 348 (477)
| ||||++++.+.++++.+ ++.|+. +++.|||+ .+.+.++++..+. +.+|+++.+++.|+++++.
T Consensus 73 G-GEPll~~~~~~~li~~~-~~~g~~-----~~i~TNG~~~~~~~~~~~ll~~~d~-v~isl~~~~~~~~~~~~g~---- 140 (235)
T TIGR02493 73 G-GEPLLQPEFLSELFKAC-KELGIH-----TCLDTSGFLGGCTEAADELLEYTDL-VLLDIKHFNPEKYKKLTGV---- 140 (235)
T ss_pred C-cccccCHHHHHHHHHHH-HHCCCC-----EEEEcCCCCCccHHHHHHHHHhCCE-EEEeCCCCCHHHHHHHHCC----
Confidence 9 99999998888888854 567775 89999995 3567777776564 5799999999999998764
Q ss_pred cHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC--eEEEEeecCCC------------CCCCC
Q 011810 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC--KINLISFNPHC------------GSQFT 414 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~--~VnLipynp~~------------~~~~~ 414 (477)
++++++++++. ..+.+.++.+++++++|+||+.+++++++++++.++. .+.++||+|.+ ..+++
T Consensus 141 ~~~~v~~~i~~--l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~ 218 (235)
T TIGR02493 141 SLQPTLDFAKY--LAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVK 218 (235)
T ss_pred CcHHHHHHHHH--HHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCC
Confidence 46899999996 4677888999999999999999999999999999873 78999999753 23578
Q ss_pred CCcHHHHHHHHHHHHhC
Q 011810 415 PTTDEKMIEFRNILAGA 431 (477)
Q Consensus 415 ~ps~e~l~~f~~~L~~~ 431 (477)
+|+.++++++++++.++
T Consensus 219 ~~~~~~~~~~~~~~~~~ 235 (235)
T TIGR02493 219 PPNKEQLERAAEIFKEY 235 (235)
T ss_pred CCCHHHHHHHHHHHhhC
Confidence 99999999999988763
No 25
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.93 E-value=2.9e-25 Score=223.39 Aligned_cols=208 Identities=21% Similarity=0.392 Sum_probs=168.2
Q ss_pred EEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCC-----------------------------------
Q 011810 195 FMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL----------------------------------- 239 (477)
Q Consensus 195 ~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~----------------------------------- 239 (477)
|..+||+++++|++ .+||++.|.+|+++....
T Consensus 7 ~~~~~g~g~r~~~f-------------~~gc~~~C~~c~~p~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~ 73 (295)
T TIGR02494 7 YSVHDGPGIRTTVF-------------LKGCPLRCKWCSNPESQRKSPELLFKENRCLGCGKCVEVCPAGTARLSELADG 73 (295)
T ss_pred ccccCCCCchhHHH-------------hhcCCccCcccCCccccCCCceEEEccccCCCCchhhhhCcccccccccccCC
Confidence 56789999999887 699999999999874210
Q ss_pred -----------------------------CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHH
Q 011810 240 -----------------------------KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290 (477)
Q Consensus 240 -----------------------------~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~ 290 (477)
++.++.+++++.+.....++.. ....|+|+| ||||++++.+.++++.
T Consensus 74 ~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g~~~t~eel~~~i~~~~~~~~~---~~~~V~~sG-GEPll~~~~l~~l~~~ 149 (295)
T TIGR02494 74 RNRIIIRREKCTHCGKCTEACPSGALSIVGEEMTVEEVMRVVLRDSIFYRN---SGGGVTLSG-GEPLLQPEFALALLQA 149 (295)
T ss_pred CcceeechhhcCchhHhhccCcHhHHhhhccCCcHHHHHHHHHHHHHhccc---CCCcEEeeC-cchhchHHHHHHHHHH
Confidence 2345788888877765444322 234688999 9999999888899986
Q ss_pred HHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe
Q 011810 291 MVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368 (477)
Q Consensus 291 l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~ 368 (477)
+ ++.|+. ++++|||+. +.+.++++..+.. .+|+|+.+++.|+++++. +++.++++++. +.+.+.+
T Consensus 150 ~-k~~g~~-----~~i~TnG~~~~~~~~~ll~~~d~~-~isl~~~~~~~~~~~~g~----~~~~vl~~i~~--l~~~~~~ 216 (295)
T TIGR02494 150 C-HERGIH-----TAVETSGFTPWETIEKVLPYVDLF-LFDIKHLDDERHKEVTGV----DNEPILENLEA--LAAAGKN 216 (295)
T ss_pred H-HHcCCc-----EeeeCCCCCCHHHHHHHHhhCCEE-EEeeccCChHHHHHHhCC----ChHHHHHHHHH--HHhCCCc
Confidence 4 567875 999999975 4677777766654 599999999999999875 36889999996 3567889
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCC---CeEEEEeecCCCCC------------CCCCCcHHHHHHHHHHHHhCC
Q 011810 369 VLFEYVMLAGVNDSFDDAKRLIGLVQGIP---CKINLISFNPHCGS------------QFTPTTDEKMIEFRNILAGAG 432 (477)
Q Consensus 369 V~ieyvLI~GvNDs~ed~~~La~ll~~l~---~~VnLipynp~~~~------------~~~~ps~e~l~~f~~~L~~~G 432 (477)
+.+++++++|+||+.++++++++++++++ ..++++||+|.+.. ++++|+.++++++++.+++.|
T Consensus 217 ~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 217 VVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYHRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred EEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCCchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999886 38999999997542 245799999999999998765
No 26
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.93 E-value=1.2e-24 Score=222.38 Aligned_cols=231 Identities=20% Similarity=0.272 Sum_probs=176.3
Q ss_pred eeEEEEecCccCCCCCCCCCCCC----CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM----GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~----g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~ 290 (477)
..++++.+.+||++|.||+.+.. ...+.++++|+.+.+..+.+ .+++.|.|+| ||||++.+ +.++++.
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~------~gi~~I~~tG-GEPll~~~-l~~li~~ 88 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVA------LGVRKVRLTG-GEPLLRKD-LEDIIAA 88 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHH------CCCCEEEEEC-CCCcCccC-HHHHHHH
Confidence 37888999999999999998652 34567999999998866543 3688999999 99999964 7788887
Q ss_pred HHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCC-
Q 011810 291 MVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY- 367 (477)
Q Consensus 291 l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~- 367 (477)
+.+..+. ..++++|||+. +.+.+|.+.+...|.||||+.+++.++++++. .++++++++++. + .+.+.
T Consensus 89 i~~~~~~----~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~---~~~~~vl~~i~~-~-~~~g~~ 159 (331)
T PRK00164 89 LAALPGI----RDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGR---DRLDQVLAGIDA-A-LAAGLT 159 (331)
T ss_pred HHhcCCC----ceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCC---CCHHHHHHHHHH-H-HHCCCC
Confidence 6543333 36999999974 45677777775678899999999999987654 578999999997 3 55665
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCC-CCCCCcHHHHHHHHHHHHhCCCeEEec--------
Q 011810 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-QFTPTTDEKMIEFRNILAGAGCTVFLR-------- 438 (477)
Q Consensus 368 ~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~-~~~~ps~e~l~~f~~~L~~~Gi~v~vR-------- 438 (477)
++.+++++++|+|+ +++.+++++++++++.+++++|+|.+.. .+........+++.+.|++.|+.++.+
T Consensus 160 ~v~i~~vv~~g~n~--~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (331)
T PRK00164 160 PVKVNAVLMKGVND--DEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPRARSGGPAQ 237 (331)
T ss_pred cEEEEEEEECCCCH--HHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccccCCCCCCCE
Confidence 89999999999987 6899999999999999999999988643 343333344566677777664433222
Q ss_pred -----CCCC---------CcccccccccccCCCC--CCCccC
Q 011810 439 -----LSRG---------DDQMAACGQLGNPGAI--QAPLLR 464 (477)
Q Consensus 439 -----~s~G---------~di~aaCGQL~~~~~~--~~~~~~ 464 (477)
...| ...|+.|..++..+++ .||+..
T Consensus 238 ~~~~~~~~~~ig~i~~~s~~fC~~c~r~r~t~dG~l~~Cl~~ 279 (331)
T PRK00164 238 YFRHPDYGGEIGLIAPVTHDFCASCNRLRLTADGKLHLCLFA 279 (331)
T ss_pred EEEECCCCeEEEEEeCCCCcccccCCeEEEcCCCcEEEcCCC
Confidence 1111 2467889999999887 788776
No 27
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.93 E-value=2e-24 Score=208.59 Aligned_cols=182 Identities=16% Similarity=0.258 Sum_probs=157.2
Q ss_pred CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch--HHHH
Q 011810 239 LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLK 316 (477)
Q Consensus 239 ~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~--p~i~ 316 (477)
.++.+|++|+++++...+.++..++++ |+|+| |||+++++++.++++. +++.|++ +++.|||+. +.+.
T Consensus 15 ~g~~~t~eel~~~~~~~~~f~~~sggG---Vt~SG-GEPllq~~fl~~l~~~-~k~~gi~-----~~leTnG~~~~~~~~ 84 (213)
T PRK10076 15 IGRDITLDALEREVMKDDIFFRTSGGG---VTLSG-GEVLMQAEFATRFLQR-LRLWGVS-----CAIETAGDAPASKLL 84 (213)
T ss_pred cCcccCHHHHHHHHHhhhHhhcCCCCE---EEEeC-chHHcCHHHHHHHHHH-HHHcCCC-----EEEECCCCCCHHHHH
Confidence 356799999999999888888654444 56999 9999999999999995 5678986 999999986 4678
Q ss_pred HHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC
Q 011810 317 QFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI 396 (477)
Q Consensus 317 ~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l 396 (477)
++++..|..+ +|+|+.|++.|.++++.+ .+.++++++. ..+.+.++++++++|||+||++++++++++|++++
T Consensus 85 ~l~~~~D~~l-~DiK~~d~~~~~~~tG~~----~~~il~nl~~--l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l 157 (213)
T PRK10076 85 PLAKLCDEVL-FDLKIMDATQARDVVKMN----LPRVLENLRL--LVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPL 157 (213)
T ss_pred HHHHhcCEEE-EeeccCCHHHHHHHHCCC----HHHHHHHHHH--HHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 8888888765 999999999999999865 6899999996 46778899999999999999999999999999987
Q ss_pred CC-eEEEEeecCCCC------------CCCCCCcHHHHHHHHHHHHhCCCeEEe
Q 011810 397 PC-KINLISFNPHCG------------SQFTPTTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 397 ~~-~VnLipynp~~~------------~~~~~ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
+. .++|+||||.+. .+.++++.+.++++++++++.|+++++
T Consensus 158 ~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 158 GIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CCceEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 64 799999999642 245788999999999999999999876
No 28
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.91 E-value=5.1e-23 Score=210.27 Aligned_cols=252 Identities=19% Similarity=0.223 Sum_probs=181.6
Q ss_pred cCCCHHHHHHHHH-Hhccc----cceEeEEee----cCCCceEEEE-EecCCCeeEEEEeccCCCceeEEEEecCccCCC
Q 011810 159 EGLNKDFKKMLSE-HAEFR----ALSLKDILT----SSDGTRKILF-MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMN 228 (477)
Q Consensus 159 ~~l~~~~r~~L~~-~~~~~----~~~~~~~~~----s~Dgt~K~l~-~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~ 228 (477)
..+++..++.|.. .|.+- ..++..+.. ...+..|.-| .+.....++ | -.+..|||++
T Consensus 5 ~~~~~~~~~~~~~~~y~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~q---~----------~P~~~~C~~r 71 (322)
T PRK13762 5 IMIPSEIAKILRKQGYHIVGRHSAVKLCHWTKKALKGGRSCYKSKFYGIESHRCVQ---M----------TPVVAWCNQR 71 (322)
T ss_pred cccCHHHHHHHHhCCCEEeccccceeechhhHHHhcCCCcccccccccccchheec---c----------CchhHHHhcc
Confidence 3467778888874 45542 345555532 2344666655 222222221 1 1125689999
Q ss_pred CCCCCCCCCC-------CCcCCCHHHHHHHHHHHH-HHhcc-------------cCCCeeEEEEecCCcccCCHHHHHHH
Q 011810 229 CQFCYTGRMG-------LKRHLTAAEIVEQAVFAR-RLLSS-------------EVGSITNVVFMGMGEPLHNVENVIKA 287 (477)
Q Consensus 229 C~FC~tg~~g-------~~r~Lt~eEIv~qv~~~~-~~~~~-------------~~~~v~nIvF~GmGEPLln~d~vi~~ 287 (477)
|.||+++... ..+..+++||++++.... .++.. +...++++.|+|.||||+++ .+.++
T Consensus 72 C~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~p-~l~el 150 (322)
T PRK13762 72 CLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLYP-YLPEL 150 (322)
T ss_pred CceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccchh-hHHHH
Confidence 9999987432 245789999999998763 33311 01236789999889999985 68899
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCchHH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcC
Q 011810 288 ANIMVHEQGLHFSPRKVTVSTSGLVPQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN 366 (477)
Q Consensus 288 i~~l~~~~Gl~i~~r~ItvsTNGi~p~-i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~ 366 (477)
++. .++.|+. +.|.|||+.+. +++| ......+.||||+++++.|+++++......++.++++++. +.+.+
T Consensus 151 i~~-~k~~Gi~-----~~L~TNG~~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~--l~~~~ 221 (322)
T PRK13762 151 IEE-FHKRGFT-----TFLVTNGTRPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLEL--LPSKK 221 (322)
T ss_pred HHH-HHHcCCC-----EEEECCCCCHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHH--HHhCC
Confidence 985 5667885 99999998764 5555 4444567899999999999999864234578999999996 46667
Q ss_pred CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC-----CCCcHHHHHHHHHHHHhC-CCeE
Q 011810 367 YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF-----TPTTDEKMIEFRNILAGA-GCTV 435 (477)
Q Consensus 367 ~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~-----~~ps~e~l~~f~~~L~~~-Gi~v 435 (477)
.++++++++++|+||++++ +++++++.+++ .|.+.||++.+...+ ..|+.+++++|.+.+.+. |+.+
T Consensus 222 ~~~~ir~tlv~g~Nd~e~~--~~a~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~~~~~~~i 295 (322)
T PRK13762 222 TRTVIRITLVKGYNMHDPE--GFAKLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELAEYTGYEI 295 (322)
T ss_pred CCEEEEEEEECCcCccHHH--HHHHHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHHHhcCCeE
Confidence 8999999999999998655 89999998864 899999998876533 458899999999999886 5543
No 29
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.90 E-value=5.4e-23 Score=210.08 Aligned_cols=235 Identities=19% Similarity=0.253 Sum_probs=161.7
Q ss_pred ecCCCceEEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCC
Q 011810 185 TSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG 264 (477)
Q Consensus 185 ~s~Dgt~K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~ 264 (477)
.+.||+.|+++..+|+..||+|+++| .+| ++|+ +|.|||++|+||++......++....+.++++....+ . ..
T Consensus 69 ~~~~~~~~d~~~~~~~~~v~gl~hkY-~~r-~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~---~-~~ 141 (321)
T TIGR03821 69 EQHPGYSADPLDEQDANPVPGLLHKY-HGR-VLLI-VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIA---Q-HP 141 (321)
T ss_pred ccCCCcCCCchhhcCCCcCCeeeeec-CCE-EEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHH---h-cC
Confidence 35689999999999999999999999 566 6777 6899999999999987655554333445555443222 1 25
Q ss_pred CeeEEEEecCCcccCCHHH-HHHHHHHHHHh---cCCCCCCCeEEEEcCCchHHHHHHHh-cC-CeEEEEeeCCCCHHHH
Q 011810 265 SITNVVFMGMGEPLHNVEN-VIKAANIMVHE---QGLHFSPRKVTVSTSGLVPQLKQFLN-ES-NCALAVSLNATTDEVR 338 (477)
Q Consensus 265 ~v~nIvF~GmGEPLln~d~-vi~~i~~l~~~---~Gl~i~~r~ItvsTNGi~p~i~~L~~-~~-d~~LaISL~a~~~e~r 338 (477)
++.+|+||| ||||++.|. +.++++.+..- ..++|+.|-..+.||-+.+++.+.+. .+ ...+.+|++++. |++
T Consensus 142 ~i~~VvltG-GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei~ 219 (321)
T TIGR03821 142 EINEVILSG-GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EID 219 (321)
T ss_pred CCCEEEEeC-cccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hCc
Confidence 789999999 999999775 44555443321 12222222223444434455544444 33 455557999995 554
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCCCCCc
Q 011810 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTT 417 (477)
Q Consensus 339 ~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~~~ps 417 (477)
+++.++++. ..+.|..+.+++++++|+||+.+++.+|.+.+..+++ .+.+..+.|.++......+
T Consensus 220 ------------d~~~~ai~~--L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~ 285 (321)
T TIGR03821 220 ------------AEVADALAK--LRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVD 285 (321)
T ss_pred ------------HHHHHHHHH--HHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCC
Confidence 346778886 4678999999999999999999999999999998876 4556666777765544555
Q ss_pred HHHHHHHHHHHHh----CCCeEEecCCCC
Q 011810 418 DEKMIEFRNILAG----AGCTVFLRLSRG 442 (477)
Q Consensus 418 ~e~l~~f~~~L~~----~Gi~v~vR~s~G 442 (477)
.++..++.+.+.+ ..++.+++...|
T Consensus 286 ~~~~~~i~~~l~~~~sG~~~P~~v~d~pg 314 (321)
T TIGR03821 286 DERARALMAELLARLPGYLVPRLVREIPG 314 (321)
T ss_pred HHHHHHHHHHHHHhCCCCccceeEEEcCC
Confidence 5555555555544 445667777665
No 30
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.90 E-value=3.2e-22 Score=208.32 Aligned_cols=231 Identities=19% Similarity=0.306 Sum_probs=169.0
Q ss_pred eeEEEEecCccCCCCCCCCCCCCC----CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRMG----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~g----~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~ 290 (477)
..+++|.+.+||++|.||+.+... ....++.+|+.+.+..+.+ .++..|.|+| ||||++++ +.++++.
T Consensus 58 ~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~------~Gv~~I~~tG-GEPllr~d-l~eli~~ 129 (373)
T PLN02951 58 NYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVA------AGVDKIRLTG-GEPTLRKD-IEDICLQ 129 (373)
T ss_pred cEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHH------CCCCEEEEEC-CCCcchhh-HHHHHHH
Confidence 468999999999999999976321 1245899999887765432 3788999999 99999975 7788876
Q ss_pred HHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcC-C
Q 011810 291 MVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN-Y 367 (477)
Q Consensus 291 l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~-~ 367 (477)
+.+..|+. .+++.|||+. +.+.+|.+.+...+.||||+.+++.++++++.. .+++++++++. + .+.+ .
T Consensus 130 l~~~~gi~----~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~---~~~~vl~~I~~-a-~~~G~~ 200 (373)
T PLN02951 130 LSSLKGLK----TLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRK---GHDRVLESIDT-A-IELGYN 200 (373)
T ss_pred HHhcCCCc----eEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCC---CHHHHHHHHHH-H-HHcCCC
Confidence 54434653 5899999974 567888887755678999999999999998643 36999999997 3 4556 4
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCC----CcHHHHHHHHHH---HHh-----CCCeE
Q 011810 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTP----TTDEKMIEFRNI---LAG-----AGCTV 435 (477)
Q Consensus 368 ~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~----ps~e~l~~f~~~---L~~-----~Gi~v 435 (477)
++.+++++++|+|| +++.++++++++.+..+.++.|.|.++..+.. +..+.++.+.+. +.. .|...
T Consensus 201 ~vkin~vv~~g~N~--~Ei~~li~~a~~~gi~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~ 278 (373)
T PLN02951 201 PVKVNCVVMRGFND--DEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAK 278 (373)
T ss_pred cEEEEEEecCCCCH--HHHHHHHHHHHhCCCeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCce
Confidence 79999999999987 47999999999998899999999987653321 223333333332 111 12222
Q ss_pred EecC-----------CCCCcccccccccccCCCC--CCCccC
Q 011810 436 FLRL-----------SRGDDQMAACGQLGNPGAI--QAPLLR 464 (477)
Q Consensus 436 ~vR~-----------s~G~di~aaCGQL~~~~~~--~~~~~~ 464 (477)
+.+. ......|+.|-.++.++++ ++||..
T Consensus 279 ~y~~~~~~g~ig~I~~~s~~FC~~CnRlRltadG~l~~CL~~ 320 (373)
T PLN02951 279 NFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNLKVCLFG 320 (373)
T ss_pred EEEECCCCeEEEEEcCCcccccccCCeEEEccCCcEEecCCC
Confidence 2221 1224689999999999888 788876
No 31
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.89 E-value=1e-21 Score=198.54 Aligned_cols=230 Identities=18% Similarity=0.276 Sum_probs=170.3
Q ss_pred eeEEEEecCccCCCCCCCCCCC-CCCC---cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGR-MGLK---RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~-~g~~---r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~ 290 (477)
..+-+|.+..||++|.||+... ..+. ..|+++||...+..+.+ .++..|-++| ||||+..| +.++++.
T Consensus 11 ~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~------~Gv~kvRlTG-GEPllR~d-l~eIi~~ 82 (322)
T COG2896 11 RYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAE------LGVEKVRLTG-GEPLLRKD-LDEIIAR 82 (322)
T ss_pred ceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHH------cCcceEEEeC-CCchhhcC-HHHHHHH
Confidence 5678899999999999999754 3332 37899999888876654 3788999999 99999954 6777776
Q ss_pred HHHhcCCCCCCCeEEEEcCCch-H-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCC-
Q 011810 291 MVHEQGLHFSPRKVTVSTSGLV-P-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY- 367 (477)
Q Consensus 291 l~~~~Gl~i~~r~ItvsTNGi~-p-~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~- 367 (477)
+.+. ++ ..++++|||+. + ...+|.+.+--.+.||||+.+++.+.+|++.+. ++++++.++. +.+.|.
T Consensus 83 l~~~-~~----~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~---~~~Vl~GI~~--A~~~Gl~ 152 (322)
T COG2896 83 LARL-GI----RDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDR---LDRVLEGIDA--AVEAGLT 152 (322)
T ss_pred Hhhc-cc----ceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCc---HHHHHHHHHH--HHHcCCC
Confidence 6544 55 37999999984 4 567777777666789999999999999997653 8999999997 456665
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCC-----CCCCCcHHHHHHHHHHH-----H--hCCC--
Q 011810 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-----QFTPTTDEKMIEFRNIL-----A--GAGC-- 433 (477)
Q Consensus 368 ~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~-----~~~~ps~e~l~~f~~~L-----~--~~Gi-- 433 (477)
+|.+++|+++|+||. ++.++++|+++.+..+.+|-|.|.+.. ++.-+..+-.+.+.+.. . ..+-
T Consensus 153 pVKlN~Vv~kgvNd~--ei~~l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~ 230 (322)
T COG2896 153 PVKLNTVLMKGVNDD--EIEDLLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVRKRLHGRAK 230 (322)
T ss_pred ceEEEEEEecCCCHH--HHHHHHHHHhhcCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccccccCCCce
Confidence 699999999999975 799999999999998888888887642 11122222222222210 0 1111
Q ss_pred --------eEEecCCCCCcccccccccccCCCC--CCCccC
Q 011810 434 --------TVFLRLSRGDDQMAACGQLGNPGAI--QAPLLR 464 (477)
Q Consensus 434 --------~v~vR~s~G~di~aaCGQL~~~~~~--~~~~~~ 464 (477)
.+.+-.+...+.|+.|-.++...++ ++||++
T Consensus 231 ~~~~~~~~~ig~I~p~~~~FC~~CnR~Rlt~dGkl~~CL~~ 271 (322)
T COG2896 231 YFIHPDGGEIGFIAPVSNPFCATCNRLRLTADGKLKPCLFR 271 (322)
T ss_pred EEEeCCCcEEEEEcCCCchhhhhcceeeeccCCeEEeccCC
Confidence 2222334445689999999999888 677776
No 32
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.89 E-value=2.1e-21 Score=195.99 Aligned_cols=231 Identities=20% Similarity=0.280 Sum_probs=164.5
Q ss_pred eeEEEEecCccCCCCCCCCCCCCCC--CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRMGL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~g~--~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
.+++++.+.+||++|.||+.+.... .+.++.+|+...+....+ .++..|.|+| ||||++.+ +.++++.+.
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~------~gi~~I~~tG-GEPll~~~-l~~iv~~l~ 81 (302)
T TIGR02668 10 TSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASE------FGVRKVKITG-GEPLLRKD-LIEIIRRIK 81 (302)
T ss_pred CeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHH------cCCCEEEEEC-cccccccC-HHHHHHHHH
Confidence 4677888999999999999864332 357899988776654432 3688899999 99999976 567888654
Q ss_pred HhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-E
Q 011810 293 HEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-V 369 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V 369 (477)
+.|+. .++++|||+. +.+.++.+.+...+.||||+.+++.++++++ ..++++++++++. + .+.|.. +
T Consensus 82 -~~g~~----~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~---~~~~~~vl~~i~~-~-~~~G~~~v 151 (302)
T TIGR02668 82 -DYGIK----DVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG---RGALDRVIEGIES-A-VDAGLTPV 151 (302)
T ss_pred -hCCCc----eEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccC---CCcHHHHHHHHHH-H-HHcCCCcE
Confidence 45652 5999999974 3456666666556789999999999998876 3468999999997 3 556654 9
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCC-CCCCcHHHHHHHHHHHHhC----------CCeE-Ee
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ-FTPTTDEKMIEFRNILAGA----------GCTV-FL 437 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~-~~~ps~e~l~~f~~~L~~~----------Gi~v-~v 437 (477)
.+++++++|.|+ +++.+++++++++++.++++++.|.+... ..........++.+.+++. +-.. .+
T Consensus 152 ~i~~v~~~g~n~--~ei~~~~~~~~~~g~~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 229 (302)
T TIGR02668 152 KLNMVVLKGIND--NEIPDMVEFAAEGGAILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMADRVRTRRMHNRPKYFI 229 (302)
T ss_pred EEEEEEeCCCCH--HHHHHHHHHHHhcCCEEEEEEEeECCCCccchhhceecHHHHHHHHHHhcccccccCCCCCcEEEe
Confidence 999999999875 57999999999999999999999875321 1011111222333333321 1111 11
Q ss_pred c--------CCCCC-cccccccccccCCCC--CCCccCC
Q 011810 438 R--------LSRGD-DQMAACGQLGNPGAI--QAPLLRV 465 (477)
Q Consensus 438 R--------~s~G~-di~aaCGQL~~~~~~--~~~~~~~ 465 (477)
. ..... ..|+.|..++...++ .||++..
T Consensus 230 ~~~~~~g~i~~~~~~~fC~~c~r~r~t~dG~l~~Cl~~~ 268 (302)
T TIGR02668 230 PGGVEVEVVKPMDNPVFCAHCTRLRLTSDGKLKTCLLRD 268 (302)
T ss_pred CCCeEEEEECccCCCCccccCCeEEEcCCCCEEECCCCC
Confidence 1 12223 478899999999887 7888774
No 33
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.88 E-value=8.4e-21 Score=194.49 Aligned_cols=230 Identities=15% Similarity=0.198 Sum_probs=165.8
Q ss_pred eEEEEecCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 216 TVCVSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 216 tlCVSsq~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
.+-++.+.+||++|.||+..... ....++.+|+...+..+.+ .++..|.|+| ||||++.+ +.++++.+.
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~------~Gv~~I~~tG-GEPllr~d-l~~li~~i~ 86 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTE------LGVRKIRLTG-GEPLVRRG-CDQLVARLG 86 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHH------CCCCEEEEEC-cCCCcccc-HHHHHHHHH
Confidence 34566789999999999976432 2356999998877765433 3688999999 99999965 678888665
Q ss_pred HhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCC-eE
Q 011810 293 HEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY-KV 369 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~-~V 369 (477)
+..++. .+++.|||+. +.+++|.+.+...+.||||+.+++.++++++. .++++++++++. ..+.+. ++
T Consensus 87 ~~~~l~----~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~---g~~~~vl~~i~~--~~~~Gi~~v 157 (329)
T PRK13361 87 KLPGLE----ELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRN---GRLERVIAGIDA--AKAAGFERI 157 (329)
T ss_pred hCCCCc----eEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCC---CCHHHHHHHHHH--HHHcCCCce
Confidence 433442 5899999974 45667777765567899999999999998863 468999999996 456676 79
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCC-CC---CCCcHHHH-HHHHHHHH------h-CCCeEE-
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-QF---TPTTDEKM-IEFRNILA------G-AGCTVF- 436 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~-~~---~~ps~e~l-~~f~~~L~------~-~Gi~v~- 436 (477)
.+++++++|.|+ +++.++++++++++..+.++.|.|.+.. .+ .-.+.+++ +.+.+... . .|-..+
T Consensus 158 ~in~v~~~g~N~--~ei~~~~~~~~~~gi~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (329)
T PRK13361 158 KLNAVILRGQND--DEVLDLVEFCRERGLDIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRTGGPARYY 235 (329)
T ss_pred EEEEEEECCCCH--HHHHHHHHHHHhcCCeEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCCCCCCeEE
Confidence 999999999885 6899999999999988888888887642 11 22344444 33333311 0 121111
Q ss_pred -ec---------CCCCCcccccccccccCCCC--CCCccC
Q 011810 437 -LR---------LSRGDDQMAACGQLGNPGAI--QAPLLR 464 (477)
Q Consensus 437 -vR---------~s~G~di~aaCGQL~~~~~~--~~~~~~ 464 (477)
+. .......|+.|..++.++++ ++||..
T Consensus 236 ~~~~~~~~ig~I~~~s~~fC~~Cnr~rlt~~G~l~~Cl~~ 275 (329)
T PRK13361 236 TMADSPIHIGFISPHSHNFCHECNRVRVTAEGQLLLCLGN 275 (329)
T ss_pred EECCCCeEEEEEcCCCccccccCCeEEEccCCcEEecCCC
Confidence 11 23335688999999999887 777765
No 34
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.87 E-value=1.1e-20 Score=193.53 Aligned_cols=231 Identities=19% Similarity=0.270 Sum_probs=165.3
Q ss_pred eEEEEecCccCCCCCCCCCCCCC-----CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHH
Q 011810 216 TVCVSSQVGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290 (477)
Q Consensus 216 tlCVSsq~GCnl~C~FC~tg~~g-----~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~ 290 (477)
.+-++.+.+||++|.||+....+ ..+.++.+|+.+.+..+.+ .++..|.|+| ||||++.+ +.++++.
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~------~gv~~V~ltG-GEPll~~~-l~~li~~ 82 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVG------LGVRKVRLTG-GEPLLRKD-LVELVAR 82 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHH------CCCCEEEEEC-ccccccCC-HHHHHHH
Confidence 44566689999999999986521 2457899998877765433 3688999999 99999965 6788886
Q ss_pred HHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe
Q 011810 291 MVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368 (477)
Q Consensus 291 l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~ 368 (477)
+.+..|+. .++++|||+. +.+.+|.+.+...+.||+|+.+++.++++++. ..++++++++++. +.+.+..
T Consensus 83 i~~~~gi~----~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~--~~~~~~vl~~i~~--l~~~G~~ 154 (334)
T TIGR02666 83 LAALPGIE----DIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRR--GGRLEQVLAGIDA--ALAAGLE 154 (334)
T ss_pred HHhcCCCC----eEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCC--CCCHHHHHHHHHH--HHHcCCC
Confidence 65545662 5999999974 45677777665567899999999999988743 3468999999997 4567775
Q ss_pred -EEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCC-CCC----CCcHHHHHHHHHHH---Hh------CCC
Q 011810 369 -VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-QFT----PTTDEKMIEFRNIL---AG------AGC 433 (477)
Q Consensus 369 -V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~-~~~----~ps~e~l~~f~~~L---~~------~Gi 433 (477)
+.+++++++|.|+ +++.++++++++++..+.++.|.|.++. .+. .+..+.++.+.+.. .. .|-
T Consensus 155 ~v~in~vv~~g~n~--~ei~~l~~~~~~~gv~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~ 232 (334)
T TIGR02666 155 PVKLNTVVMRGVND--DEIVDLAEFAKERGVTLRFIELMPLGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGP 232 (334)
T ss_pred cEEEEEEEeCCCCH--HHHHHHHHHHHhcCCeEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCC
Confidence 9999999999886 5799999999999988999999887643 221 12233334443332 10 011
Q ss_pred -eEEe---cCC---------CCCcccccccccccCCCC--CCCccC
Q 011810 434 -TVFL---RLS---------RGDDQMAACGQLGNPGAI--QAPLLR 464 (477)
Q Consensus 434 -~v~v---R~s---------~G~di~aaCGQL~~~~~~--~~~~~~ 464 (477)
..+. ... .....|+.|..++..+++ ++|+..
T Consensus 233 ~~~~~~~~~~~~~~ig~i~~~s~~fC~~cnr~r~t~dG~l~~Cl~~ 278 (334)
T TIGR02666 233 APAYRWRLPGGKGRIGFISPVSDPFCGTCNRLRLTADGKLRLCLFA 278 (334)
T ss_pred ceeeeeecCCCCeEEEEEccCCcccccccCEEEEccCCCEEEccCC
Confidence 1221 111 124678999999988777 777765
No 35
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.86 E-value=4.1e-20 Score=174.31 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=134.2
Q ss_pred EEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEE
Q 011810 195 FMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVF 271 (477)
Q Consensus 195 ~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF 271 (477)
|.++|++++.+.++. +.|||++|.||+++... ....++++++++.+.... ..+..|.|
T Consensus 8 ~~~~~~~g~~~~~~~------------t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~-------~~~~~i~~ 68 (191)
T TIGR02495 8 FSMLDYPGKLAFTIF------------FQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ-------GLIDGVVI 68 (191)
T ss_pred cccccCCCCeEEEEE------------cCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc-------CCCCeEEE
Confidence 567788877655442 68999999999997432 234689999999887531 23678899
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchH-HHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP-QLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 272 ~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p-~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
+| ||||++++ +.++++.+ ++.|+. +.+.|||+.+ .+.++++.+ ...+.+|+++. ++.+.++++..+.+.
T Consensus 69 sG-GEPll~~~-l~~li~~~-~~~g~~-----v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g~~~~~~ 139 (191)
T TIGR02495 69 TG-GEPTLQAG-LPDFLRKV-RELGFE-----VKLDTNGSNPRVLEELLEEGLVDYVAMDVKAP-PEKYPELYGLEKNGS 139 (191)
T ss_pred EC-CcccCcHh-HHHHHHHH-HHCCCe-----EEEEeCCCCHHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHCCCCchH
Confidence 99 99999987 88888865 456764 9999999865 466777655 24568999996 567777877543332
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
++++++++. ..+.+.++.+++++++|.|+ .+++++++++++.++ -+.+.|
T Consensus 140 -~~~~~~i~~--l~~~gi~~~i~~~v~~~~~~-~~ei~~~~~~l~~~~-~~~~~~ 189 (191)
T TIGR02495 140 -NNILKSLEI--LLRSGIPFELRTTVHRGFLD-EEDLAEIATRIKENG-TYVLQP 189 (191)
T ss_pred -HHHHHHHHH--HHHcCCCEEEEEEEeCCCCC-HHHHHHHHHHhccCC-cEEeec
Confidence 489999986 46688899999999999998 789999999999876 333333
No 36
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.86 E-value=3.3e-20 Score=185.46 Aligned_cols=205 Identities=20% Similarity=0.310 Sum_probs=157.9
Q ss_pred CccCCCCCCCCCCCCC-----CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCC
Q 011810 223 VGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297 (477)
Q Consensus 223 ~GCnl~C~FC~tg~~g-----~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl 297 (477)
.-|+.+|.||+.|... ....+..++|.+++.....+.+..+..+++|+|+|.|||+|++ ++-+.|+. .++.|.
T Consensus 32 ~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~-~L~elI~~-~k~~g~ 109 (296)
T COG0731 32 KWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYP-NLGELIEE-IKKRGK 109 (296)
T ss_pred hhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCccccc-CHHHHHHH-HHhcCC
Confidence 3799999999987543 2345778888888877655432112479999999999999984 46677774 355662
Q ss_pred CCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeC
Q 011810 298 HFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 377 (477)
Q Consensus 298 ~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~ 377 (477)
..+.|.|||..|.+.+-+...+ .|.+||||++++++++|.....+-.++++++.+.. +......++++|++|++
T Consensus 110 ----~~tflvTNgslpdv~~~L~~~d-ql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~-~~~~~~~~~vir~tlvk 183 (296)
T COG0731 110 ----KTTFLVTNGSLPDVLEELKLPD-QLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEI-FRSEYKGRTVIRTTLVK 183 (296)
T ss_pred ----ceEEEEeCCChHHHHHHhccCC-EEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHH-hhhcCCCcEEEEEEEec
Confidence 1599999999987766555444 45799999999999999876666789999999997 44432678999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCCCCC-----CCcHHHHHHHHHHHHhC-CCeE
Q 011810 378 GVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQFT-----PTTDEKMIEFRNILAGA-GCTV 435 (477)
Q Consensus 378 GvNDs~ed~~~La~ll~~l~-~~VnLipynp~~~~~~~-----~ps~e~l~~f~~~L~~~-Gi~v 435 (477)
|+||+.+++++++++++.+. ..|.+..|...+...+. .|..+++.+|.+.|.+. |+.+
T Consensus 184 g~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~ 248 (296)
T COG0731 184 GINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEI 248 (296)
T ss_pred cccCChHHHHHHHHHHHhcCCCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCeee
Confidence 99999999999999999874 58888877655544443 67788999999999876 5544
No 37
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.82 E-value=1.2e-18 Score=182.69 Aligned_cols=198 Identities=16% Similarity=0.195 Sum_probs=150.4
Q ss_pred cCccCCCCCCCCCCCCC---------------------------CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC
Q 011810 222 QVGCAMNCQFCYTGRMG---------------------------LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 274 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g---------------------------~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm 274 (477)
..|||+.|+||++++.. .++.++++|+++.+.....++.. ....|.|+|.
T Consensus 6 ~~gC~~~C~wC~~p~~~~~~~~~c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~---~~ggVtisGG 82 (404)
T TIGR03278 6 GIDCRGFCRYCYFKKVDDEQPFGCKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTG---RDTKVTISGG 82 (404)
T ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcC---CCCEEEEECC
Confidence 37888888888877521 24568999999999998876643 2345779995
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEE-cCCc---h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVS-TSGL---V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 275 GEPLln~d~vi~~i~~l~~~~Gl~i~~r~Itvs-TNGi---~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
|||+++ +++.++++. .++.|++ +.+. |||. . +.+.++++.+-..+.+|+|+.|++.|+++++..+
T Consensus 83 Gepl~~-~~l~eLl~~-lk~~gi~-----taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~--- 152 (404)
T TIGR03278 83 GDVSCY-PELEELTKG-LSDLGLP-----IHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPT--- 152 (404)
T ss_pred cccccC-HHHHHHHHH-HHhCCCC-----EEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCC---
Confidence 566665 778999995 4567875 8886 9974 2 4678888875334569999999999999998643
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC-----------CCCCCc
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS-----------QFTPTT 417 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~-----------~~~~ps 417 (477)
.+.+++++++ +. + +..++++.+++||+||+++. .+++++++++++ .|+|.||++.+.. ++.+++
T Consensus 153 a~~ILe~L~~-L~-e-~~~v~~~ivlIPGiND~eel-~~ti~~L~~lg~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~ 228 (404)
T TIGR03278 153 PEASLQCLRR-FC-E-SCEVHAASVIIPGVNDGDVL-WKTCADLESWGAKALILMRFANTEEQGLILGNAPIIPGIKPHT 228 (404)
T ss_pred HHHHHHHHHH-HH-h-cCCEEEEEEEeCCccCcHHH-HHHHHHHHHCCCCEEEEEecccccccccccCCcCcccCCCCCC
Confidence 3899999997 44 4 47899999999999998765 599999999875 7999999864321 256778
Q ss_pred HHHHHHH-HHHHHhCCCeEE
Q 011810 418 DEKMIEF-RNILAGAGCTVF 436 (477)
Q Consensus 418 ~e~l~~f-~~~L~~~Gi~v~ 436 (477)
.+++.++ +++.++.+++++
T Consensus 229 ~~e~~~~v~~~~~~~~i~~~ 248 (404)
T TIGR03278 229 VSEFKNIVRETHKEFPIRVT 248 (404)
T ss_pred HHHHHHHHHHHHHHhCCccc
Confidence 8888877 677777776653
No 38
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.79 E-value=1.6e-17 Score=173.12 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=143.7
Q ss_pred eeEEEEecCccCCCCCCCCCCCC--CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM--GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~--g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
..+.+..+.+||++|.||+.... ...+.++.+++.+.+..+.+ .++..|.|+| ||||++.+ +.++++.+
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~------~g~~~v~~~G-GEPll~~~-~~~il~~~- 86 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA------LGALQLHFSG-GEPLLRKD-LEELVAHA- 86 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH------cCCcEEEEEC-CccCCchh-HHHHHHHH-
Confidence 45666678999999999997532 23467899888777765533 3577899999 99999976 67888854
Q ss_pred HhcCCCCCCCeEEEEcCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeE
Q 011810 293 HEQGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNGi~---p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V 369 (477)
++.|+. +.+.|||+. +.+++|.+.+...+.||||+.+++.++++++.. .++++++++++. ..+.+.++
T Consensus 87 ~~~g~~-----~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~--g~f~~~~~~i~~--l~~~g~~v 157 (378)
T PRK05301 87 RELGLY-----TNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTK--GAFAKKLAVARL--VKAHGYPL 157 (378)
T ss_pred HHcCCc-----EEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCC--chHHHHHHHHHH--HHHCCCce
Confidence 556775 899999973 456667666545678999999999999988753 368999999996 56788899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCC----CCCCCCcHHHHHHHHHHH
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCG----SQFTPTTDEKMIEFRNIL 428 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~----~~~~~ps~e~l~~f~~~L 428 (477)
.+.+++.+ .+.+++.++++++.++++ .+.+.++.+.+. .....++.++++++.+.+
T Consensus 158 ~i~~vv~~---~N~~~i~~~~~~~~~lgv~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 218 (378)
T PRK05301 158 TLNAVIHR---HNIDQIPRIIELAVELGADRLELANTQYYGWALLNRAALMPTREQLERAERIV 218 (378)
T ss_pred EEEEEeec---CCHHHHHHHHHHHHHcCCCEEEEecccccChhhhcccccCCCHHHHHHHHHHH
Confidence 99988765 457899999999999886 566666554431 112346677777765554
No 39
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.79 E-value=2.7e-17 Score=167.98 Aligned_cols=233 Identities=16% Similarity=0.214 Sum_probs=157.8
Q ss_pred eEEEEecCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 216 TVCVSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 216 tlCVSsq~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
++.+..+.+||++|.||...... ..+.++.+++++.+.. .++..|.|+| ||||++++ +.++++.+
T Consensus 29 ~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e---------~g~~~V~i~G-GEPLL~pd-l~eiv~~~- 96 (318)
T TIGR03470 29 VLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDE---------CGAPVVSIPG-GEPLLHPE-IDEIVRGL- 96 (318)
T ss_pred EEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHH---------cCCCEEEEeC-cccccccc-HHHHHHHH-
Confidence 44455589999999999976432 2357899988876643 2466799999 99999976 78888854
Q ss_pred HhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEE
Q 011810 293 HEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 370 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ 370 (477)
++.|+ ++.+.|||++ +.+.++.+.+...+.||||+.. +.|+++++ ++..+++++++++. +.+.|.++.
T Consensus 97 ~~~g~-----~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~-e~hd~~~~--~~g~f~~~l~~I~~--l~~~G~~v~ 166 (318)
T TIGR03470 97 VARKK-----FVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLR-EHHDASVC--REGVFDRAVEAIRE--AKARGFRVT 166 (318)
T ss_pred HHcCC-----eEEEecCceehHHHHHHHHhCCCcEEEEEEecCc-hhhchhhc--CCCcHHHHHHHHHH--HHHCCCcEE
Confidence 45565 4999999985 4677777766567789999985 67777653 34578999999997 466788999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC---CCCCCcHHHHHHHHHHHHh---CCCeE-----Eec
Q 011810 371 FEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS---QFTPTTDEKMIEFRNILAG---AGCTV-----FLR 438 (477)
Q Consensus 371 ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~---~~~~ps~e~l~~f~~~L~~---~Gi~v-----~vR 438 (477)
+.++++.+ ++.+++.+++++++++++ .+.+.|..+.+.. .......+..+.|.++++. .++.. ++.
T Consensus 167 v~~tv~~~--~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~s~~~l~ 244 (318)
T TIGR03470 167 TNTTLFND--TDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVLSNGNGKRWRFNHSPLFLD 244 (318)
T ss_pred EEEEEeCC--CCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHHhhccCCCCcccCCHHHHH
Confidence 99988876 457899999999999987 6888886665321 1122223334445454432 22221 111
Q ss_pred CCCCCccccccc---cccc--CCCCCCCccC---ChhHHHHHh
Q 011810 439 LSRGDDQMAACG---QLGN--PGAIQAPLLR---VPEKFQTAI 473 (477)
Q Consensus 439 ~s~G~di~aaCG---QL~~--~~~~~~~~~~---~~~~~~~~~ 473 (477)
.-.|. ..-.|| -+.. .+..+||.+. ....|+.-+
T Consensus 245 ~l~g~-~~~~C~~~~~~~~~~~G~~~pC~~~~~~~~~~~~~~~ 286 (318)
T TIGR03470 245 FLAGN-QQYECTPWGNPTRNVFGWQKPCYLLNDGYVPTFRELM 286 (318)
T ss_pred HHcCC-CCccccCCCCcccCccccccCceecCCcchhhHHHHH
Confidence 11233 234565 3333 4567999887 456676433
No 40
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.77 E-value=3.9e-17 Score=168.75 Aligned_cols=193 Identities=17% Similarity=0.235 Sum_probs=140.0
Q ss_pred eeEEEEecCccCCCCCCCCCCCC--CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM--GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~--g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
.++.+..+..||++|.||+.+.. .....++.+++.+.+.++.+ .++..|.|+| ||||++.+ +.++++.+
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~------~g~~~v~~~G-GEPll~~~-~~~ii~~~- 77 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAE------LGVLQLHFSG-GEPLARPD-LVELVAHA- 77 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHh------cCCcEEEEeC-cccccccc-HHHHHHHH-
Confidence 35666778999999999997532 23457898887776655432 3577899999 99999976 67888854
Q ss_pred HhcCCCCCCCeEEEEcCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeE
Q 011810 293 HEQGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNGi~---p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V 369 (477)
++.|+. +.+.|||++ +.+++|.+.+...|.||||+++++.++++++. +.++++++++++. ..+.+.++
T Consensus 78 ~~~g~~-----~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~--~g~f~~v~~~i~~--l~~~g~~v 148 (358)
T TIGR02109 78 RRLGLY-----TNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGY--KNAFEQKLAMARA--VKAAGLPL 148 (358)
T ss_pred HHcCCe-----EEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCC--ccHHHHHHHHHHH--HHhCCCce
Confidence 566764 899999974 35666776654467899999999999998764 2368999999996 46788889
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC----CCCCCcHHHHHHHHHHH
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIEFRNIL 428 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~----~~~~ps~e~l~~f~~~L 428 (477)
.+.+++.+ ++.+++.++++++.++++ .+.+.+..+.+.. ....|+.++++++.+.+
T Consensus 149 ~v~~vv~~---~N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~ 209 (358)
T TIGR02109 149 TLNFVIHR---HNIDQIPEIIELAIELGADRVELATTQYYGWALLNRAALMPTRAQLEEATRIV 209 (358)
T ss_pred EEEEEecc---CCHHHHHHHHHHHHHcCCCEEEEEeeeccCchhcchhhcCCCHHHHHHHHHHH
Confidence 99988765 467899999999999875 4555443333211 12346666666655443
No 41
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.76 E-value=3e-17 Score=163.40 Aligned_cols=172 Identities=20% Similarity=0.354 Sum_probs=140.5
Q ss_pred CCceeEEEEecCccCCCCCCCCCCCCCCCc------CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHH
Q 011810 212 RGRTTVCVSSQVGCAMNCQFCYTGRMGLKR------HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVI 285 (477)
Q Consensus 212 ~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r------~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi 285 (477)
.|++.+-|--..|||++|.||.-....+.| ...++.+++.+....++- +.++. ..+-|+|||++++ .+.
T Consensus 104 RGtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~K---gkglE-aHlDGqGEP~lYP-~l~ 178 (414)
T COG2100 104 RGTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFK---GKGLE-AHLDGQGEPLLYP-HLV 178 (414)
T ss_pred cCceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhh---CCCeE-EEecCCCCCccch-hHH
Confidence 578888888899999999999976544432 357888888888776653 24554 6788999999985 678
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHH
Q 011810 286 KAANIMVHEQGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362 (477)
Q Consensus 286 ~~i~~l~~~~Gl~i~~r~ItvsTNGi~---p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~ 362 (477)
++++.+..-.|+. .+++.|||+. +.+.+|.+.+-..+.+|+||.|++.-+.+++. +.|+++++++.++. .
T Consensus 179 ~lVqalk~~~~v~----vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvle~aE~--i 251 (414)
T COG2100 179 DLVQALKEHKGVE----VVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGR-KDYDVKKVLEVAEY--I 251 (414)
T ss_pred HHHHHHhcCCCce----EEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCc-cccCHHHHHHHHHH--H
Confidence 8888776667776 5999999974 46788888876667799999999999999987 57999999999995 4
Q ss_pred hhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 011810 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP 397 (477)
Q Consensus 363 ~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~ 397 (477)
..++..+.+.-+++||+||. ++.++++|..+++
T Consensus 252 ~~a~idvlIaPv~lPG~ND~--E~~~iIe~A~~iG 284 (414)
T COG2100 252 ANAGIDVLIAPVWLPGVNDD--EMPKIIEWAREIG 284 (414)
T ss_pred HhCCCCEEEeeeecCCcChH--HHHHHHHHHHHhC
Confidence 56999999999999999986 7999999998775
No 42
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.75 E-value=1.1e-16 Score=149.35 Aligned_cols=188 Identities=14% Similarity=0.200 Sum_probs=138.8
Q ss_pred eEEEEecCccCCCCCCCCCCCCC-CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHH-HHHHHHHHHHH
Q 011810 216 TVCVSSQVGCAMNCQFCYTGRMG-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE-NVIKAANIMVH 293 (477)
Q Consensus 216 tlCVSsq~GCnl~C~FC~tg~~g-~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d-~vi~~i~~l~~ 293 (477)
++++..+.|||++|.||+.+... ..+..+++++.+++....+..... ..+..+.|.| |||+++.+ .+.+.++.+.+
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~-~~~~~i~~~g-g~~~~~~~~~~~~~~~~~~~ 79 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKE-ILVGTVFIGG-GTPTLLSPEQLEELLEAIRE 79 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCC-cceeEEEECC-CCCCCCCHHHHHHHHHHHHH
Confidence 35566689999999999986532 145677888888887764322111 1367788888 99999875 37777776655
Q ss_pred hcCCCCCCCeEEEEcCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEE
Q 011810 294 EQGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 370 (477)
Q Consensus 294 ~~Gl~i~~r~ItvsTNGi~---p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ 370 (477)
..+.+ ....+++.|||.. +.+++|.+.+...+.+|+++.+++.++++.+ ..++++++++++. ..+.+. +.
T Consensus 80 ~~~~~-~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~---~~~~~~~~~~i~~--~~~~g~-~~ 152 (216)
T smart00729 80 ILGLA-DDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR---GHTVEDVLEAVEK--LREAGP-IK 152 (216)
T ss_pred hCCCC-CCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC---CCCHHHHHHHHHH--HHHhCC-cc
Confidence 44321 1345899999752 4567777776547889999999999988544 4568999999997 355663 56
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 371 FEYVMLAGVN-DSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 371 ieyvLI~GvN-Ds~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+.+.++.|++ ++.+++.++++++.++++ .|.+.+|.|.+++.
T Consensus 153 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~ 196 (216)
T smart00729 153 VSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTP 196 (216)
T ss_pred eEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCCh
Confidence 6777788876 889999999999999887 59999999987764
No 43
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.72 E-value=1.6e-15 Score=155.22 Aligned_cols=216 Identities=18% Similarity=0.200 Sum_probs=147.6
Q ss_pred CCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCC-C--CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc
Q 011810 200 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM-G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE 276 (477)
Q Consensus 200 G~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~-g--~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE 276 (477)
+..++.++.+| ++|..+. .+.+||++|+||+.... + ....++.+|+.+.+..... ..++..|+|+| ||
T Consensus 76 ~~~~~gl~hky-p~rvll~--vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~-----~~~I~~VilSG-GD 146 (321)
T TIGR03822 76 HSPVPGIVHRY-PDRVLLK--PVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIAD-----HPEIWEVILTG-GD 146 (321)
T ss_pred CCCCCCcccCC-CCEEEEE--ecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHh-----CCCccEEEEeC-CC
Confidence 44566677766 4555544 47999999999998753 1 1244666666655543322 14788999999 99
Q ss_pred ccCC-HHHHHHHHHHHHHhcCCCCCCCeEEEEcCC-----c--hHHHHH-HHhcCCeEEEEeeCCCCHHHHhhHcCCCCC
Q 011810 277 PLHN-VENVIKAANIMVHEQGLHFSPRKVTVSTSG-----L--VPQLKQ-FLNESNCALAVSLNATTDEVRNWIMPINRK 347 (477)
Q Consensus 277 PLln-~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNG-----i--~p~i~~-L~~~~d~~LaISL~a~~~e~r~~I~pi~~~ 347 (477)
||+. .+.+.++++.+.+ .+. -..+.+.|++ . .+++.+ |.+.+ ..+.|++|+.++.. +
T Consensus 147 Pl~~~~~~L~~ll~~l~~-i~~---v~~iri~Tr~~v~~p~rit~ell~~L~~~g-~~v~i~l~~~h~~e---l------ 212 (321)
T TIGR03822 147 PLVLSPRRLGDIMARLAA-IDH---VKIVRFHTRVPVADPARVTPALIAALKTSG-KTVYVALHANHARE---L------ 212 (321)
T ss_pred cccCCHHHHHHHHHHHHh-CCC---ccEEEEeCCCcccChhhcCHHHHHHHHHcC-CcEEEEecCCChhh---c------
Confidence 9985 3567777776654 221 1246777754 2 244444 44444 44568888865421 2
Q ss_pred CcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCCCCCcHHHHHHHHH
Q 011810 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRN 426 (477)
Q Consensus 348 ~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~~~ps~e~l~~f~~ 426 (477)
.++++++++. ..+.|..+.++.++++|+||+.+++.+|.+++..+++ .+.+..+.|.++......+.++..++.+
T Consensus 213 --~~~~~~ai~~--L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~ 288 (321)
T TIGR03822 213 --TAEARAACAR--LIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVR 288 (321)
T ss_pred --CHHHHHHHHH--HHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHH
Confidence 2678899996 4778999999999999999999999999999998876 5667777888776555566777777776
Q ss_pred HHHhC--C--CeEEecCCCC
Q 011810 427 ILAGA--G--CTVFLRLSRG 442 (477)
Q Consensus 427 ~L~~~--G--i~v~vR~s~G 442 (477)
.+.+. | ++..++...|
T Consensus 289 ~l~~~~~g~~~p~~v~~~~~ 308 (321)
T TIGR03822 289 ALRGRISGLAQPTYVLDIPG 308 (321)
T ss_pred HHHHhCCCCcceeEEEeCCC
Confidence 66652 4 4456665444
No 44
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.71 E-value=1.9e-15 Score=156.72 Aligned_cols=194 Identities=14% Similarity=0.207 Sum_probs=126.2
Q ss_pred cCccCCCCCCCCCCCCCCC------cCCCHHHHHHHHHH-HHHHhcccCCCeeEEEEecCCcccCCH-HHHHHHHHHHHH
Q 011810 222 QVGCAMNCQFCYTGRMGLK------RHLTAAEIVEQAVF-ARRLLSSEVGSITNVVFMGMGEPLHNV-ENVIKAANIMVH 293 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g~~------r~Lt~eEIv~qv~~-~~~~~~~~~~~v~nIvF~GmGEPLln~-d~vi~~i~~l~~ 293 (477)
+.+||++|.||+.+..... ..++ .|.++.+.. +.+.. .+...|+|+| ||||+++ +.+.++++. .+
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~-~~~~~~~i~~~~~~~----~~~~~i~~~G-GEPll~~~~~~~~~~~~-~~ 84 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMR-DEVLESMVKRVLNEA----EGHCSFAFQG-GEPTLAGLEFFEELMEL-QR 84 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCC-HHHHHHHHHHHHhcc----CCceEEEEEC-CccccCChHHHHHHHHH-HH
Confidence 5799999999998753221 1244 455555443 22221 2456799999 9999994 666677774 44
Q ss_pred hcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCC-CCCCcHHHHHHHHHHHHHhhcCCeEE
Q 011810 294 EQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPI-NRKYKLGLLIETLREELHFKNNYKVL 370 (477)
Q Consensus 294 ~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi-~~~~~le~ile~l~~~l~~~~~~~V~ 370 (477)
+.|+.--.-.+++.|||++ +.+.+++.+..+.+.||||++ ++.|+.+++. +++.+++.++++++. + .+.+.++.
T Consensus 85 ~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~-l-~~~~~~~~ 161 (370)
T PRK13758 85 KHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAEL-F-KKYKVEFN 161 (370)
T ss_pred HhccCCCeEEEEEEecCEecCHHHHHHHHHcCceEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHH-H-HHhCCCce
Confidence 5443100113689999974 566555554445789999998 5788887754 345689999999997 4 56677888
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEe-ecCCCCC---CCCCCcHHHHHHHHHHH
Q 011810 371 FEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLIS-FNPHCGS---QFTPTTDEKMIEFRNIL 428 (477)
Q Consensus 371 ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLip-ynp~~~~---~~~~ps~e~l~~f~~~L 428 (477)
+.+++.+. +.+++.++++++.+++. .+.+++ +.|.... .-...+++++.+|.+.+
T Consensus 162 i~~~v~~~---n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l 221 (370)
T PRK13758 162 ILCVVTSN---TARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNL 221 (370)
T ss_pred EEEEeccc---cccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHHHHHHHH
Confidence 88888773 45678999999998876 466655 3554321 11234556555554444
No 45
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.69 E-value=1.5e-15 Score=156.12 Aligned_cols=217 Identities=17% Similarity=0.195 Sum_probs=135.0
Q ss_pred CCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCC-HHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc
Q 011810 200 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLT-AAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL 278 (477)
Q Consensus 200 G~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt-~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL 278 (477)
...++.++.+| .+|. .+-.+.|||++|+||++.......... .+++.+.+. ++.. ..++..|+|+| ||||
T Consensus 101 ~~~~~gl~hky-~~rv--ll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~----~i~~-~~~i~eV~lsG-GDPL 171 (331)
T TIGR00238 101 TSPVPGLTHRY-VNRA--LFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALD----YIAE-HPEIIEILISG-GDPL 171 (331)
T ss_pred CCcCCCceeec-CCcE--EEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHH----HHHh-CCCcCEEEEEC-Cccc
Confidence 34566677766 3444 444579999999999986543222222 334333332 2322 25789999999 9999
Q ss_pred CCHH-HHHHHHHHHHHhcCCCCCCCeEEEEcCCc-----hHHHHHHHhc-C-CeEEEEeeCCCCHHHHhhHcCCCCCCcH
Q 011810 279 HNVE-NVIKAANIMVHEQGLHFSPRKVTVSTSGL-----VPQLKQFLNE-S-NCALAVSLNATTDEVRNWIMPINRKYKL 350 (477)
Q Consensus 279 ln~d-~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi-----~p~i~~L~~~-~-d~~LaISL~a~~~e~r~~I~pi~~~~~l 350 (477)
+..+ .+.++++.+.+-.++. .-++...|+|+ .+++.+++.. + ...+ ++.....+|.+
T Consensus 172 l~~d~~L~~ll~~L~~i~~~~--~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~-vsh~nh~~Ei~------------ 236 (331)
T TIGR00238 172 MAKDHELEWLLKRLEEIPHLV--RLRIGTRLPVVIPQRITDELCELLASFELQLML-VTHINHCNEIT------------ 236 (331)
T ss_pred cCCHHHHHHHHHHHHhcCCcc--EEEeecCCCccCchhcCHHHHHHHHhcCCcEEE-EccCCChHhCC------------
Confidence 9865 3666666654322221 11344445554 3555555555 3 3332 44333223322
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCCCCCcHHHHHHHHHHHH
Q 011810 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 351 e~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~~~ps~e~l~~f~~~L~ 429 (477)
+++.++++. ..+.|..+.++++|++|+||+.+++.+|.+.+..+++ .+.+..+.|.++...-..+.++..++.+.+.
T Consensus 237 ~~~~~ai~~--L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~~~~~~~~~i~~~l~ 314 (331)
T TIGR00238 237 EEFAEAMKK--LRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFLVPDAEAAQIVKELA 314 (331)
T ss_pred HHHHHHHHH--HHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccccCCHHHHHHHHHHHH
Confidence 467888886 4678999999999999999999999999999987765 4555666777665544455555555555555
Q ss_pred h----CCCeEEecCCCC
Q 011810 430 G----AGCTVFLRLSRG 442 (477)
Q Consensus 430 ~----~Gi~v~vR~s~G 442 (477)
+ ..++.+++...|
T Consensus 315 ~~~sG~~~P~~v~~~~g 331 (331)
T TIGR00238 315 RLTSGYLVPKFAVEIMG 331 (331)
T ss_pred hcCCCCcceeEEecCCC
Confidence 4 334556665443
No 46
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=149.34 Aligned_cols=197 Identities=17% Similarity=0.291 Sum_probs=155.1
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC---CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~---g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~ 290 (477)
..|+. +.|||++|.||+||.. +.+..++++++.+.+...++ .+..||.|.| |||+.|..++++++++
T Consensus 120 SgTVF---FsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~------~GakNvN~Vg-g~Ptp~lp~Ile~l~~ 189 (335)
T COG1313 120 SGTVF---FSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRR------HGAKNVNFVG-GDPTPHLPFILEALRY 189 (335)
T ss_pred CceEE---ecCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHH------hcCcceeecC-CCCCCchHHHHHHHHH
Confidence 34555 5899999999999964 35688999999988887654 3788999999 9999999999999996
Q ss_pred HHHhcCCCCCCCeEEEEcCCch-HHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe
Q 011810 291 MVHEQGLHFSPRKVTVSTSGLV-PQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368 (477)
Q Consensus 291 l~~~~Gl~i~~r~ItvsTNGi~-p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~ 368 (477)
+.+. +. +...|||+. ++..+|++-. |+.| -+++-.|++.-.++..+.+. ++-+.+++.. .....+.
T Consensus 190 ~~~~--iP-----vvwNSnmY~s~E~l~lL~gvVDiyL-~DfKYgNdeca~kySkvp~Y--~eVv~rn~~~--~~~~~g~ 257 (335)
T COG1313 190 ASEN--IP-----VVWNSNMYMSEETLKLLDGVVDIYL-PDFKYGNDECAEKYSKVPNY--WEVVTRNILE--AKEQVGG 257 (335)
T ss_pred HhcC--CC-----EEEecCCccCHHHHHHhhccceeee-cccccCCHHHHHHhhcCCch--HHHHHHHHHH--HHHhcCc
Confidence 5433 54 999999985 6777777764 9998 99999999988888877543 4667778775 3444447
Q ss_pred EEEEEEEeCCCCCCHHH-HHHHHHHHhcC-C--CeEEEEe-ecCCCCC-C----CCCCcHHHHHHHHHHHHhCCCeE
Q 011810 369 VLFEYVMLAGVNDSFDD-AKRLIGLVQGI-P--CKINLIS-FNPHCGS-Q----FTPTTDEKMIEFRNILAGAGCTV 435 (477)
Q Consensus 369 V~ieyvLI~GvNDs~ed-~~~La~ll~~l-~--~~VnLip-ynp~~~~-~----~~~ps~e~l~~f~~~L~~~Gi~v 435 (477)
+.++..++||. .++ -+.+.+|++.. + ..||++. |.|.... . -++++.+++++..++.++.|+.-
T Consensus 258 ~iiRHLVlPgh---lecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~ 331 (335)
T COG1313 258 LIIRHLVLPGH---LECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTN 331 (335)
T ss_pred eEEEEEecCCc---hhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCce
Confidence 99999999983 334 67788888754 3 4788877 8887432 2 36889999999999999999863
No 47
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.67 E-value=1.4e-14 Score=151.92 Aligned_cols=214 Identities=20% Similarity=0.226 Sum_probs=141.6
Q ss_pred CCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCC-C-CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcc
Q 011810 200 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM-G-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP 277 (477)
Q Consensus 200 G~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~-g-~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEP 277 (477)
...++.++.+| ++|..+-+ +.+||+.|+||+..+. + ....++.+++.+.+....+ ..++..|.|+| |||
T Consensus 96 ~spvpGl~HrY-p~rvLl~v--T~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~-----~p~I~~VlLSG-GDP 166 (417)
T TIGR03820 96 DSPVPGITHRY-PDRVLFLV--SNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRN-----TPQIRDVLLSG-GDP 166 (417)
T ss_pred cCCCCCceecc-CCEEEEEE--cCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHh-----cCCCCEEEEeC-Ccc
Confidence 34566777777 45655555 7999999999997652 2 2245677666655544332 25789999999 999
Q ss_pred cCCHHHHHH-HHHHHHHhcCCCCCCCeEEEEcC-----Cc--hHHHHHHHhc-CCeEEEEeeCCCCHHHHhhHcCCCCCC
Q 011810 278 LHNVENVIK-AANIMVHEQGLHFSPRKVTVSTS-----GL--VPQLKQFLNE-SNCALAVSLNATTDEVRNWIMPINRKY 348 (477)
Q Consensus 278 Lln~d~vi~-~i~~l~~~~Gl~i~~r~ItvsTN-----Gi--~p~i~~L~~~-~d~~LaISL~a~~~e~r~~I~pi~~~~ 348 (477)
|+..+..++ +++.+.+-.++ +.|.+.|+ +. .+.+.+++.. ..+++.++++++. |+
T Consensus 167 Lll~d~~L~~iL~~L~~IphV----~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~-Ei----------- 230 (417)
T TIGR03820 167 LLLSDDYLDWILTELRAIPHV----EVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPR-EI----------- 230 (417)
T ss_pred ccCChHHHHHHHHHHhhcCCC----ceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChH-hC-----------
Confidence 998664433 35555432233 35788888 32 3555555544 4788889999984 32
Q ss_pred cHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCCCCCcHHHHHHHHHH
Q 011810 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNI 427 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~~~ps~e~l~~f~~~ 427 (477)
.+++++++++ +.+.|..+..+.||++||||+.+.+.+|.+-+-.+++ ...|....+..|..+-..+.++-.++.+.
T Consensus 231 -t~~a~~Al~~--L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~ 307 (417)
T TIGR03820 231 -TASSKKALAK--LADAGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIES 307 (417)
T ss_pred -hHHHHHHHHH--HHHcCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcHHHHHHHHHH
Confidence 2578899997 4778999999999999999999999999887776654 22333335666655444445555555555
Q ss_pred HHh----CCCeEEecCCC
Q 011810 428 LAG----AGCTVFLRLSR 441 (477)
Q Consensus 428 L~~----~Gi~v~vR~s~ 441 (477)
|+. ..++.+++...
T Consensus 308 lr~~~sG~~vP~~v~d~p 325 (417)
T TIGR03820 308 LIGHTSGFAVPTYVVDAP 325 (417)
T ss_pred HHHhCCCCCceEEEEecC
Confidence 554 33455665543
No 48
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.67 E-value=7.8e-15 Score=144.16 Aligned_cols=151 Identities=17% Similarity=0.285 Sum_probs=105.0
Q ss_pred eEeEEee-cCCCceEEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCC---CC---CcCCCHHHHHHH
Q 011810 179 SLKDILT-SSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRM---GL---KRHLTAAEIVEQ 251 (477)
Q Consensus 179 ~~~~~~~-s~Dgt~K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~---g~---~r~Lt~eEIv~q 251 (477)
.+.+.+. |-+|.-++. +..+|+++ +.|||++|.||++... +. .+.++.+|+++.
T Consensus 4 ~v~EiF~~SiQGEG~~~-------G~~~~FvR------------~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~ 64 (238)
T TIGR03365 4 PVLEIFGPTIQGEGMVI-------GQKTMFVR------------TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQE 64 (238)
T ss_pred ceeeeecCccccCcccc-------CCeEEEEE------------eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHH
Confidence 4566664 666644443 55777775 6899999999998652 11 124899999998
Q ss_pred HHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeC
Q 011810 252 AVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLN 331 (477)
Q Consensus 252 v~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~ 331 (477)
+.... ..++..|+|+| ||||++. .+.++++.+ ++.|+. +.+.|||+.+. ++++..+ .+++|+|
T Consensus 65 i~~~~------~~~~~~V~lTG-GEPll~~-~l~~li~~l-~~~g~~-----v~leTNGtl~~--~~l~~~d-~v~vs~K 127 (238)
T TIGR03365 65 LKALG------GGTPLHVSLSG-GNPALQK-PLGELIDLG-KAKGYR-----FALETQGSVWQ--DWFRDLD-DLTLSPK 127 (238)
T ss_pred HHHHh------CCCCCeEEEeC-CchhhhH-hHHHHHHHH-HHCCCC-----EEEECCCCCcH--HHHhhCC-EEEEeCC
Confidence 87542 13577899999 9999995 678888865 466875 99999998642 1233445 5689999
Q ss_pred CCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeC
Q 011810 332 ATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 377 (477)
Q Consensus 332 a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~ 377 (477)
+++.. .. ..++...++++. + .+ +.++.+.+|+..
T Consensus 128 ~~~sg-------~~--~~~~~~~~~ik~-l-~~-~~~~~vK~Vv~~ 161 (238)
T TIGR03365 128 PPSSG-------ME--TDWQALDDCIER-L-DD-GPQTSLKVVVFD 161 (238)
T ss_pred CCCCC-------CC--CcHHHHHHHHHH-h-hh-cCceEEEEEECC
Confidence 98752 11 136777778875 3 33 468888888763
No 49
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.66 E-value=9.7e-15 Score=154.15 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=120.5
Q ss_pred eEEEEe-cCccCCCCCCCCCCCCC-----C-CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHH-HHHHH
Q 011810 216 TVCVSS-QVGCAMNCQFCYTGRMG-----L-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE-NVIKA 287 (477)
Q Consensus 216 tlCVSs-q~GCnl~C~FC~tg~~g-----~-~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d-~vi~~ 287 (477)
++.+-. ...||++|.||+..... . ...|+.+++...+....+. ...+.-.|.|.| ||||++.+ ++.++
T Consensus 14 ~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~---~~~~~v~i~f~G-GEPlL~~~~~~~~~ 89 (412)
T PRK13745 14 YIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINS---QTMPQVLFTWHG-GETLMRPLSFYKKA 89 (412)
T ss_pred EEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHc---CCCCeEEEEEEc-cccCCCcHHHHHHH
Confidence 344443 36899999999974321 1 2347776655544443321 112334577899 99999965 44455
Q ss_pred HHHHHH-hcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCC-CCCcHHHHHHHHHHHHHh
Q 011810 288 ANIMVH-EQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPIN-RKYKLGLLIETLREELHF 363 (477)
Q Consensus 288 i~~l~~-~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~-~~~~le~ile~l~~~l~~ 363 (477)
++.+.+ ..+.+ -.++|.|||++ +++.+++.+..+.|.||||++ ++.|+.+++.. .+.++++++++++. ..
T Consensus 90 ~~~~~~~~~~~~---i~~~i~TNG~ll~~e~~~~l~~~~~~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~--l~ 163 (412)
T PRK13745 90 LELQKKYARGRQ---IDNCIQTNGTLLTDEWCEFFRENNFLVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINL--LK 163 (412)
T ss_pred HHHHHHHcCCCc---eEEEEeecCEeCCHHHHHHHHHcCeEEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHHH--HH
Confidence 553221 12222 14889999974 667666666556889999998 57888877542 35689999999996 45
Q ss_pred hcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecC
Q 011810 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNP 407 (477)
Q Consensus 364 ~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp 407 (477)
+.+..+.+.+++.+ .+.+++.++.++++++++ .++++|+.|
T Consensus 164 ~~gi~~~i~~vv~~---~n~~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 164 KHGVEWNAMAVVND---FNADYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred HcCCCEEEEEEEcC---CccccHHHHHHHHHHcCCCeEEEEeccC
Confidence 67878888777766 345678889999999887 688888766
No 50
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.63 E-value=1.7e-14 Score=129.28 Aligned_cols=155 Identities=23% Similarity=0.418 Sum_probs=114.5
Q ss_pred EecCccCCCCCCCCCCCC---CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHh--
Q 011810 220 SSQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE-- 294 (477)
Q Consensus 220 Ssq~GCnl~C~FC~tg~~---g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~-- 294 (477)
.++.|||++|.||..+.. ...+.++.+++++.+...... .++..|.|+| |||+++++. .+.+..+.+.
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~-----~~~~~i~~~~-gep~~~~~~-~~~~~~~~~~~~ 74 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQD-----KGVKEIFFGG-GEPTLHPDF-IELLELLRKIKK 74 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHH-----TTHEEEEEES-STGGGSCHH-HHHHHHHHHCTC
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHh-----cCCcEEEEee-cCCCcchhH-HHHHHHHHHhhc
Confidence 347999999999998863 345678999999998876311 2477787877 999999765 4444444444
Q ss_pred cCCCCCCCeEEEEcCCch---HHHHHHHhcCCeEEEEeeCCCCHH-HHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-E
Q 011810 295 QGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDE-VRNWIMPINRKYKLGLLIETLREELHFKNNYK-V 369 (477)
Q Consensus 295 ~Gl~i~~r~ItvsTNGi~---p~i~~L~~~~d~~LaISL~a~~~e-~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V 369 (477)
.++ ++.+.|||.. +.++.+.+.+...+.+++++.+++ .++.+. +..++++++++++. ..+.|.+ +
T Consensus 75 ~~~-----~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~---~~~~~~~~~~~l~~--l~~~g~~~~ 144 (166)
T PF04055_consen 75 RGI-----RISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN---RGKSFERVLEALER--LKEAGIPRV 144 (166)
T ss_dssp TTE-----EEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS---STSHHHHHHHHHHH--HHHTTSETE
T ss_pred ccc-----ceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc---CCCCHHHHHHHHHH--HHHcCCCcE
Confidence 243 6999999985 356777777756778999999999 665543 34578999999997 4667766 7
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHH
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLV 393 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll 393 (477)
...++++||.| .++++++++|+
T Consensus 145 ~~~i~~~~~~~--~~e~~~~~~~i 166 (166)
T PF04055_consen 145 IIFIVGLPGEN--DEEIEETIRFI 166 (166)
T ss_dssp EEEEEEBTTTS--HHHHHHHHHHH
T ss_pred EEEEEEeCCCC--HHHHHHHhCcC
Confidence 88888899865 57889998875
No 51
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.62 E-value=3.1e-14 Score=148.47 Aligned_cols=171 Identities=15% Similarity=0.226 Sum_probs=119.6
Q ss_pred cCCCCCCCCCCCCCCCcC-CCHHHHHHHHHH-HHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhc--CCCCC
Q 011810 225 CAMNCQFCYTGRMGLKRH-LTAAEIVEQAVF-ARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ--GLHFS 300 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~~r~-Lt~eEIv~qv~~-~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~--Gl~i~ 300 (477)
||++|.||+......... |+ +|+++.+.. +.+... ...| .|+|.| |||||+.+.+.+.+..+..+. |..
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms-~etle~~i~~~~~~~~--~~~v-~~~w~G-GEPlL~~~~f~~~~~~l~~k~~~~~~-- 90 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMS-DETLEEYVRQYIAASN--GDKV-TFTWQG-GEPLLAGLDFYRKAVALQQKYANGKT-- 90 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCC-HHHHHHHHHHHHhhCC--CCee-EEEEEC-CccccchHHHHHHHHHHHHHHhcCCe--
Confidence 999999999876544323 44 344444333 222211 1233 489999 999999665666555444332 322
Q ss_pred CCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcC-CCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeC
Q 011810 301 PRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMP-INRKYKLGLLIETLREELHFKNNYKVLFEYVMLA 377 (477)
Q Consensus 301 ~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~p-i~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~ 377 (477)
-.-++.|||++ +++.+++.+.++.+.||||+| ++.|++.++ .+.+.+++.++++++. +.+.+..+.+-+++-+
T Consensus 91 -i~~siqTNg~LL~~e~~e~l~~~~~~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i~~--L~~~~v~~~~~~vv~~ 166 (378)
T COG0641 91 -ISNALQTNGTLLNDEWAEFLAEHDFLIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGLEL--LQAHGVDFNTLTVVNR 166 (378)
T ss_pred -eEEEEEEcccccCHHHHHHHHhcCceEEEeccCc-hHhccccccCCCCCccHHHHHHHHHH--HHHcCCcEEEEEEEch
Confidence 23569999985 788899988888999999999 678998886 4567889999999996 4566666666666444
Q ss_pred CCCCCHHHHHHHHHHHhcCC-CeEEEEeecCCC
Q 011810 378 GVNDSFDDAKRLIGLVQGIP-CKINLISFNPHC 409 (477)
Q Consensus 378 GvNDs~ed~~~La~ll~~l~-~~VnLipynp~~ 409 (477)
++.++..++.+++...+ ..+.++|..+..
T Consensus 167 ---~n~~~~~ei~~~l~~~g~~~i~fip~~~~~ 196 (378)
T COG0641 167 ---QNVLHPEEIYHFLKSEGSKFIQFIPLVESD 196 (378)
T ss_pred ---hHhhCHHHHHHHHHHcccceEEEEecccCC
Confidence 56778888999997766 367778865553
No 52
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.61 E-value=4e-14 Score=130.12 Aligned_cols=176 Identities=21% Similarity=0.331 Sum_probs=125.3
Q ss_pred ecCccCCCCCCCCCCCCCCCcCCCHH---HHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHh-cC
Q 011810 221 SQVGCAMNCQFCYTGRMGLKRHLTAA---EIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHE-QG 296 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~g~~r~Lt~e---EIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~-~G 296 (477)
++.|||++|.||+.+........... ++.+.+.... ..++..+.|+| |||+.+. .+.++++.+.+. .+
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~g-gep~~~~-~~~~~i~~~~~~~~~ 74 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAK------ERGVEVVILTG-GEPLLYP-ELAELLRRLKKELPG 74 (204)
T ss_pred cCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHH------hcCceEEEEeC-CcCCccH-hHHHHHHHHHhhCCC
Confidence 36899999999998865433222222 3333333221 13567788888 9999997 678888866544 24
Q ss_pred CCCCCCeEEEEcCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEE
Q 011810 297 LHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 373 (477)
Q Consensus 297 l~i~~r~ItvsTNGi~---p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~iey 373 (477)
+ .+.+.|||.. +.++++.+.+...+.+|+++.+++.++.+. ++..++++++++++. ..+.+..+.+.+
T Consensus 75 ~-----~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~--~~~~~~~~~~~~ 145 (204)
T cd01335 75 F-----EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKE--LREAGLGLSTTL 145 (204)
T ss_pred c-----eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHH--HHHcCCCceEEE
Confidence 4 4999999975 456777776666678999999999998886 345678999999997 356678888888
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeecCCCCCCCC
Q 011810 374 VMLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGSQFT 414 (477)
Q Consensus 374 vLI~GvNDs~ed~~~La~ll~~l~--~~VnLipynp~~~~~~~ 414 (477)
++..+.++ .++..+..+++.... ..+++.+|.|.+++.+.
T Consensus 146 i~g~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 146 LVGLGDED-EEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred EEecCCCh-hHHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 88777665 456666666666553 46888899999887544
No 53
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=99.57 E-value=7.9e-14 Score=141.62 Aligned_cols=218 Identities=18% Similarity=0.226 Sum_probs=142.6
Q ss_pred eeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcC--CCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC
Q 011810 202 VIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRH--LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH 279 (477)
Q Consensus 202 ~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~--Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl 279 (477)
.|..++.+| .+|..+-+ +.+|++.|+||+..++....+ ++.+++-. +.+|++.+ ..|.+|.|+| |+||+
T Consensus 101 ~Vpgl~HrY-~drvLll~--t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~----al~YIa~h-PeI~eVllSG-GDPL~ 171 (369)
T COG1509 101 PVPGLTHRY-PDRVLLLV--TGVCAVYCRYCFRRRFVGQDNQGFNKEEWDK----ALDYIAAH-PEIREVLLSG-GDPLS 171 (369)
T ss_pred CCCCceeec-CCeEEEEe--cCcccceeeecccccccccccccCCHHHHHH----HHHHHHcC-chhheEEecC-CCccc
Confidence 556677777 46666666 699999999999877544332 34444333 33444443 6799999999 99999
Q ss_pred CH----HHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhc--CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHH
Q 011810 280 NV----ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNE--SNCALAVSLNATTDEVRNWIMPINRKYKLGLL 353 (477)
Q Consensus 280 n~----d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~--~d~~LaISL~a~~~e~r~~I~pi~~~~~le~i 353 (477)
-. +.+++.|+.+.|-+.+.|+.|-..+..--+.+.+.+++.. ..++|...++++++ |+ .+.
T Consensus 172 ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~E-----it--------~e~ 238 (369)
T COG1509 172 LSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNE-----IT--------PEA 238 (369)
T ss_pred cCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhh-----cC--------HHH
Confidence 53 3455555555555555555555555555556777777776 37888888888875 33 245
Q ss_pred HHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCCCCCcHHHHHHHHHHHHh--
Q 011810 354 IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNILAG-- 430 (477)
Q Consensus 354 le~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~-- 430 (477)
.+++++ ....|..+.-+.||++||||+++.+.+|.+-+...++ ...+....+..|...-..+.++..++.+.|+.
T Consensus 239 ~~A~~~--L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~~i~~~~~i~~~lr~~~ 316 (369)
T COG1509 239 REACAK--LRDAGVPLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRVPIAEGLQIVEELRGRT 316 (369)
T ss_pred HHHHHH--HHHcCceeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceeccHHHHHHHHHHHHHhC
Confidence 677776 4678999999999999999999999999888876553 12222223445554444444444445555544
Q ss_pred --CCCeEEecCCCCC
Q 011810 431 --AGCTVFLRLSRGD 443 (477)
Q Consensus 431 --~Gi~v~vR~s~G~ 443 (477)
..+++.++.-.|.
T Consensus 317 SG~~~P~~v~d~pgg 331 (369)
T COG1509 317 SGYAVPTLVVDIPGG 331 (369)
T ss_pred CCcccceeEEecCCC
Confidence 4456677765553
No 54
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.57 E-value=5.3e-13 Score=135.61 Aligned_cols=178 Identities=19% Similarity=0.312 Sum_probs=130.1
Q ss_pred ceeEEEEecCccCCCCCCCCCCCCCC-CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRMGL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~g~-~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
...+-+..+..||++|.||+...... ...+++++....+..+.+. +. +..+.|.| |||+++ +.+.+.++...
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~----g~-~~~v~~~g-GEPll~-~d~~ei~~~~~ 90 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAEL----GE-IPVVIFTG-GEPLLR-PDLLEIVEYAR 90 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHc----CC-eeEEEEeC-CCcccc-ccHHHHHHHHh
Confidence 34556667899999999998765543 5778888888555444332 12 77788888 999999 56788888655
Q ss_pred HhcCCCCCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeE
Q 011810 293 HEQGLHFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V 369 (477)
+..++ +++++|||+ . ..++++.+.+-..+.||+|+.+++.|+.+.+.. ..++.++++++. ..+.+..+
T Consensus 91 ~~~~~-----~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~--g~~~~~~~~i~~--~~~~g~~~ 161 (347)
T COG0535 91 KKGGI-----RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVK--GVFKRAVEAIKN--LKEAGILV 161 (347)
T ss_pred hcCCe-----EEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCC--cHHHHHHHHHHH--HHHcCCee
Confidence 44465 499999993 3 355666666655678999999999999888753 457999999997 35666665
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCC
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCG 410 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~ 410 (477)
.+.+++.+ .| .+++.++.+++..+++ .+++.++.|.+.
T Consensus 162 ~~~~~v~~-~n--~~~l~~~~~~~~~~g~~~~~~~~~~~~g~ 200 (347)
T COG0535 162 VINTTVTK-IN--YDELPEIADLAAELGVDELNVFPLIPVGR 200 (347)
T ss_pred eEEEEEec-Cc--HHHHHHHHHHHHHcCCCEEEEEEEeeccc
Confidence 55555444 44 5689999999998884 677777777643
No 55
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=99.53 E-value=3.4e-14 Score=130.76 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=86.0
Q ss_pred EEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCC---CCcCCC---HHHHHHHHHHHHHHhcccCCCeeE
Q 011810 195 FMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG---LKRHLT---AAEIVEQAVFARRLLSSEVGSITN 268 (477)
Q Consensus 195 ~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g---~~r~Lt---~eEIv~qv~~~~~~~~~~~~~v~n 268 (477)
+.+.||++++++++ ..|||++|+||+++... .++.++ .+++++.+... ..+..
T Consensus 8 ~s~~dG~G~r~~if-------------~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~--------~~~~g 66 (154)
T TIGR02491 8 DDIVNGEGIRVSLF-------------VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDN--------PLIDG 66 (154)
T ss_pred CceecCCCcEEEEE-------------ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhc--------CCcCe
Confidence 45789999999887 58999999999998642 346788 44555444321 13567
Q ss_pred EEEecCCcccCCH--HHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-HHH------HHHHhcCCeEEEEeeCCCCHHH--
Q 011810 269 VVFMGMGEPLHNV--ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-PQL------KQFLNESNCALAVSLNATTDEV-- 337 (477)
Q Consensus 269 IvF~GmGEPLln~--d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-p~i------~~L~~~~d~~LaISL~a~~~e~-- 337 (477)
|+|+| ||||+++ +.+.++++.+.+..+++ ..+.|||+. +.+ .++++..|+ | ++.+..+++.
T Consensus 67 Vt~sG-GEPllq~~~~~l~~ll~~~k~~~~~~-----~~~~~tG~~~~~~~~~~~~~~~l~~~D~-l-iDgk~~~~~~~~ 138 (154)
T TIGR02491 67 LTLSG-GDPLYPRNVEELIELVKKIKAEFPEK-----DIWLWTGYTWEEILEDEKHLEVLKYIDV-L-VDGKFELSKKDL 138 (154)
T ss_pred EEEeC-hhhCCCCCHHHHHHHHHHHHHhCCCC-----CEEEeeCccHHHHhcchhHHHHHhhCCE-E-EechhhhhcccC
Confidence 89999 9999965 89999999765544654 778899975 332 367777785 4 8888877653
Q ss_pred HhhHcCCC
Q 011810 338 RNWIMPIN 345 (477)
Q Consensus 338 r~~I~pi~ 345 (477)
+..+++..
T Consensus 139 ~~~~~gs~ 146 (154)
T TIGR02491 139 KLKFRGSS 146 (154)
T ss_pred CCCCCCCc
Confidence 44455543
No 56
>PRK07094 biotin synthase; Provisional
Probab=99.52 E-value=2.2e-12 Score=131.77 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=138.3
Q ss_pred ecCccCCCCCCCCCCCCC--CCc-CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCCHHHHHHHHHHHHHhcC
Q 011810 221 SQVGCAMNCQFCYTGRMG--LKR-HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHEQG 296 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~g--~~r-~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln~d~vi~~i~~l~~~~G 296 (477)
.+.||+++|.||...... ..+ .++++|+++.+..+.+ .+++.|.|.| |+ |..+.+.+.++++.+.+..+
T Consensus 45 ~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~------~g~~~i~l~g-G~~~~~~~~~l~~l~~~i~~~~~ 117 (323)
T PRK07094 45 FSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE------LGYRTIVLQS-GEDPYYTDEKIADIIKEIKKELD 117 (323)
T ss_pred ECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCCCCHHHHHHHHHHHHccCC
Confidence 379999999999976431 122 3699999998876543 3688899998 86 66677889999987765445
Q ss_pred CCCCCCeEEEEcCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEE
Q 011810 297 LHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375 (477)
Q Consensus 297 l~i~~r~ItvsTNGi~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvL 375 (477)
+. +++++.... +.+++|.+.+-..+.+++++.+++.++++.+ ..++++.+++++. ..+.|..+..-+
T Consensus 118 l~-----i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~---~~s~~~~~~~i~~--l~~~Gi~v~~~~-- 185 (323)
T PRK07094 118 VA-----ITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHP---GMSFENRIACLKD--LKELGYEVGSGF-- 185 (323)
T ss_pred ce-----EEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC---CCCHHHHHHHHHH--HHHcCCeecceE--
Confidence 53 666553333 4677777777445669999999999998876 3578999999996 466776655443
Q ss_pred eCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC---CCCcHHHHHHHHHHHH
Q 011810 376 LAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---TPTTDEKMIEFRNILA 429 (477)
Q Consensus 376 I~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~---~~ps~e~l~~f~~~L~ 429 (477)
|-|+ .++.+++.+..++++.++. .+.+.+|.|.+++++ .+++.++..++...++
T Consensus 186 iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R 244 (323)
T PRK07094 186 MVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLR 244 (323)
T ss_pred EEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 3344 4778999999999999875 688889999888753 4566666555554443
No 57
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.51 E-value=4.9e-13 Score=123.17 Aligned_cols=156 Identities=21% Similarity=0.317 Sum_probs=118.2
Q ss_pred cCccCCCCCCCCCCCCC-----CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcC
Q 011810 222 QVGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQG 296 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g-----~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~G 296 (477)
.+|||+.|.||+++... .+..++++|+++.+.+..+. .+-+.|-++| |||++-.+.+++.|+.+
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~-----~g~d~vRiSG-~EP~l~~EHvlevIeLl----- 116 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKK-----RGCDLVRISG-AEPILGREHVLEVIELL----- 116 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHh-----cCCcEEEeeC-CCccccHHHHHHHHHhc-----
Confidence 69999999999986422 24578999999999876542 4677788999 99999999999999843
Q ss_pred CCCCCCeEEEEcCCch----HH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEE
Q 011810 297 LHFSPRKVTVSTSGLV----PQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371 (477)
Q Consensus 297 l~i~~r~ItvsTNGi~----p~-i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~i 371 (477)
+.+...+.|||+. +. +++|.....+.+.+|+|++|++.+.+|++.+..| +..-+++++. + -..+.+++.
T Consensus 117 ---~~~tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~-F~~QL~aLr~-L-~~~g~rf~p 190 (228)
T COG5014 117 ---VNNTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEY-FRYQLKALRH-L-HGKGHRFWP 190 (228)
T ss_pred ---cCceEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHH-HHHHHHHHHH-H-HhcCceeee
Confidence 3356899999973 44 4556665678889999999999999999988877 8888999996 3 455666554
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCC
Q 011810 372 EYVMLAGVNDSFDDAKRLIGLVQGIP 397 (477)
Q Consensus 372 eyvLI~GvNDs~ed~~~La~ll~~l~ 397 (477)
..+ -++- .++..++|++-+.+++
T Consensus 191 A~~--~~f~-~Ed~~k~Lak~Lgehp 213 (228)
T COG5014 191 AVV--YDFF-REDGLKELAKRLGEHP 213 (228)
T ss_pred hhh--hccc-hhhhHHHHHHHhccCC
Confidence 433 3332 2334556888887653
No 58
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.47 E-value=7.7e-12 Score=130.58 Aligned_cols=191 Identities=14% Similarity=0.166 Sum_probs=143.3
Q ss_pred ecCccCCCCCCCCCCCC-C-CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC--HHHHHHHHHHHHHhcC
Q 011810 221 SQVGCAMNCQFCYTGRM-G-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN--VENVIKAANIMVHEQG 296 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~-g-~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln--~d~vi~~i~~l~~~~G 296 (477)
.+.+|+.+|.||.-... + ..+.++++||++.+..+.+ .+++.|.++| |||..+ .+.+.++++.+.+..
T Consensus 80 ~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~------~Gv~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~- 151 (371)
T PRK09240 80 LSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKK------LGFEHILLLT-GEHEAKVGVDYIRRALPIAREYF- 151 (371)
T ss_pred EcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHh------CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhC-
Confidence 47999999999986432 1 2357899999999887643 3789999999 997764 678888888776432
Q ss_pred CCCCCCeEEEEcCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEE
Q 011810 297 LHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375 (477)
Q Consensus 297 l~i~~r~ItvsTNGi~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvL 375 (477)
. .++++++.+. +.+++|.+.+-..+.+++++.+++.+.++.+.++++++++.+++++. ..+.|.+ .+...+
T Consensus 152 -p----~i~i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~--a~~aG~~-~v~~g~ 223 (371)
T PRK09240 152 -S----SVSIEVQPLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPER--AGRAGIR-KIGLGA 223 (371)
T ss_pred -C----CceeccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHH--HHHcCCC-eeceEE
Confidence 1 3667666653 67888888885577899999999999999987677889999999997 4666654 466788
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC-------eEEEEeecCCCCCCC---CCCcHHHHHHHHHHH
Q 011810 376 LAGVNDSFDDAKRLIGLVQGIPC-------KINLISFNPHCGSQF---TPTTDEKMIEFRNIL 428 (477)
Q Consensus 376 I~GvNDs~ed~~~La~ll~~l~~-------~VnLipynp~~~~~~---~~ps~e~l~~f~~~L 428 (477)
|-|++++.+|..+++..++.+.. .|.+..++|.++ ++ .+.+++++.+....+
T Consensus 224 i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~ 285 (371)
T PRK09240 224 LLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAF 285 (371)
T ss_pred EecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999987776642 355566888876 33 445666665554443
No 59
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.44 E-value=3.4e-11 Score=121.19 Aligned_cols=187 Identities=20% Similarity=0.268 Sum_probs=127.1
Q ss_pred cCccCCCCCCCCCCCCC-----CCcCCCHHHHHHHHHHHHHHhcccCCCeeEE--EEecCCcccCCH-HHHHHHHHHHHH
Q 011810 222 QVGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNV--VFMGMGEPLHNV-ENVIKAANIMVH 293 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g-----~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nI--vF~GmGEPLln~-d~vi~~i~~l~~ 293 (477)
+.||+++|.||...... ..+.++++|+++.+....+ .+++.+ +..| ++|.... ...++.+..+.+
T Consensus 36 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~------~g~~~~~l~~~g-~~~~~~~~~~~~~~i~~~~~ 108 (296)
T TIGR00433 36 SGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKA------AGATRFCLVASG-RGPKDREFMEYVEAMVQIVE 108 (296)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH------CCCCEEEEEEec-CCCChHHHHHHHHHHHHHHH
Confidence 69999999999975431 3466889999998876543 245554 3344 6766532 223333333445
Q ss_pred hcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEE
Q 011810 294 EQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371 (477)
Q Consensus 294 ~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~i 371 (477)
+.|+. +.+ ++|.. +.++.|.+.+-..+.++++ .+++.++++.+ .+++++.+++++. ..+.|.++..
T Consensus 109 ~~~i~-----~~~-~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai~~--l~~~Gi~v~~ 176 (296)
T TIGR00433 109 EMGLK-----TCA-TLGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTLEN--AKKAGLKVCS 176 (296)
T ss_pred hCCCe-----EEe-cCCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccC---CCCHHHHHHHHHH--HHHcCCEEEE
Confidence 55654 544 44653 4566666777555678999 78999988764 4578999999997 4667777665
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC---CCCCcHHHHHHHHHHHH
Q 011810 372 EYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---FTPTTDEKMIEFRNILA 429 (477)
Q Consensus 372 eyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~---~~~ps~e~l~~f~~~L~ 429 (477)
. +|-|.+++.+++.+++++++.++. .+.+.++.|.+++. +.+++.++..++...++
T Consensus 177 ~--~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r 236 (296)
T TIGR00433 177 G--GIFGLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALAR 236 (296)
T ss_pred e--EEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHH
Confidence 4 445788999999999999998875 47777788887764 56677666555544443
No 60
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.38 E-value=1.6e-12 Score=116.00 Aligned_cols=102 Identities=24% Similarity=0.538 Sum_probs=64.6
Q ss_pred CCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCC---CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC
Q 011810 199 DGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL---KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG 275 (477)
Q Consensus 199 DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~---~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG 275 (477)
+|++++.+++ +.|||++|.||++..... ...++ .+.++++..... ..++..|+|+| |
T Consensus 2 ~g~g~~~~~~-------------t~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~-----~~~~~~i~l~G-G 61 (139)
T PF13353_consen 2 NGEGIRVVLF-------------TNGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELK-----NYGIKGIVLTG-G 61 (139)
T ss_dssp TSSSCEEEEE-------------EC--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHC-----CCCCCEEEEEC-S
T ss_pred CCCCEEEEEE-------------cCcccccCcCcCCcccCccccccccc-chhhhhhhhHHh-----cCCceEEEEcC-C
Confidence 6788888777 688999999999875432 23344 566666654322 14678999999 9
Q ss_pred cccC--CHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-HH-----HHHHHhcCCeE
Q 011810 276 EPLH--NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-PQ-----LKQFLNESNCA 325 (477)
Q Consensus 276 EPLl--n~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-p~-----i~~L~~~~d~~ 325 (477)
|||+ +++.+.++++.+.+. +. ..+.+.|||.. +. +.+++...++.
T Consensus 62 EPll~~~~~~l~~i~~~~k~~-~~----~~~~~~tng~~~~~~~~~~~~~~~~~~~vs 114 (139)
T PF13353_consen 62 EPLLHENYDELLEILKYIKEK-FP----KKIIILTNGYTLDELLDELIEELLDEIDVS 114 (139)
T ss_dssp TGGGHHSHHHHHHHHHHHHHT-T-----SEEEEEETT--HHHHHHHHHHHHHHTESEE
T ss_pred CeeeeccHhHHHHHHHHHHHh-CC----CCeEEEECCCchhHHHhHHHHhccCccEEE
Confidence 9999 899999999965544 33 25899999974 22 34555555543
No 61
>PRK06256 biotin synthase; Validated
Probab=99.36 E-value=1.2e-10 Score=119.55 Aligned_cols=202 Identities=15% Similarity=0.165 Sum_probs=136.2
Q ss_pred cCccCCCCCCCCCCCCC-----CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe-cCCcccCC-HHHHHHHHHHHHHh
Q 011810 222 QVGCAMNCQFCYTGRMG-----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM-GMGEPLHN-VENVIKAANIMVHE 294 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g-----~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~-GmGEPLln-~d~vi~~i~~l~~~ 294 (477)
+.||+.+|.||...... ..+.++++||++.+..+.+. ++..+.|. |.++|... .+.+.++++.+.+.
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~------g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~ 138 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEE------GAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE 138 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHC------CCCEEEEEecCCCCCchHHHHHHHHHHHHHhc
Confidence 58999999999976431 12458999999999876542 34344443 32556543 35788888876554
Q ss_pred cCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE
Q 011810 295 QGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372 (477)
Q Consensus 295 ~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie 372 (477)
.++. +.+ ++|.. +.+++|.+.+-..+.+++++ +++.++++.+. .++++.+++++. ..+.|.++..-
T Consensus 139 ~~i~-----~~~-~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~---~t~~~~i~~i~~--a~~~Gi~v~~~ 206 (336)
T PRK06256 139 TDLE-----ICA-CLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTT---HTYEDRIDTCEM--VKAAGIEPCSG 206 (336)
T ss_pred CCCc-----EEe-cCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCC---CCHHHHHHHHHH--HHHcCCeeccC
Confidence 3432 333 35654 45677777775556689999 99999888653 468999999996 46677665543
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC---CCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---TPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~---~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
+|-|.+++.++..+++++++.++. .|.+.+++|.+++++ .+++.+++.+....++-.--.+.||-+-|+
T Consensus 207 --~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 207 --GIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred --eEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCch
Confidence 445778999999999999998875 477778888877643 456677766665555433223444444444
No 62
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.35 E-value=1.1e-10 Score=124.04 Aligned_cols=183 Identities=14% Similarity=0.293 Sum_probs=130.5
Q ss_pred eeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec-----CCcccCCHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIKAA 288 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G-----mGEPLln~d~vi~~i 288 (477)
....|.++.|||++|.||..+.. |..|..+++++++++....+ .++..|+|.| +|+++.+.+.+.+++
T Consensus 135 ~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~------~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll 208 (430)
T TIGR01125 135 HYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVD------QGVKEIILIAQDTTAYGKDLYRESKLVDLL 208 (430)
T ss_pred eEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHH------CCCcEEEEEeECCCccccCCCCcccHHHHH
Confidence 34557779999999999997653 34577899999999987643 2567788876 578776655677777
Q ss_pred HHHHHhcCCCCCCCeEEEE-c--CCchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHH
Q 011810 289 NIMVHEQGLHFSPRKVTVS-T--SGLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362 (477)
Q Consensus 289 ~~l~~~~Gl~i~~r~Itvs-T--NGi~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~ 362 (477)
+.+.+..++. .+.+. + ..+.+++.+++... -..+.+++.+.+++..+.+ ++.++.++++++++. +
T Consensus 209 ~~i~~~~~i~----~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m---~k~~~~~~~~~~i~~-l- 279 (430)
T TIGR01125 209 EELGKVGGIY----WIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLM---RRPGSGEQQLDFIER-L- 279 (430)
T ss_pred HHHHhcCCcc----EEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhC---CCCCCHHHHHHHHHH-H-
Confidence 7665433332 23332 2 33446665555433 2356789999999887653 466888999999997 3
Q ss_pred hhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 363 FKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 363 ~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
++.+..+.+...+|-|+ ++++++++++.+|+++++. .+++.+|.|.+++.
T Consensus 280 ~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~pGT~ 331 (430)
T TIGR01125 280 REKCPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEEGTD 331 (430)
T ss_pred HHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCc
Confidence 45544555555666554 6899999999999998874 78899999998764
No 63
>PRK08508 biotin synthase; Provisional
Probab=99.31 E-value=3.2e-10 Score=114.08 Aligned_cols=203 Identities=15% Similarity=0.211 Sum_probs=136.1
Q ss_pred cCccCCCCCCCCCCCCC---CC--cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc--CCHHHHHHHHHHHHHh
Q 011810 222 QVGCAMNCQFCYTGRMG---LK--RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL--HNVENVIKAANIMVHE 294 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g---~~--r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL--ln~d~vi~~i~~l~~~ 294 (477)
..||+.+|.||+..... .. +.++++||++.+..+.+ .+++.+++.+.|+-+ ...+.+.++++.+.+
T Consensus 14 s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~------~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~- 86 (279)
T PRK08508 14 SGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKA------NGALGFCLVTSGRGLDDKKLEYVAEAAKAVKK- 86 (279)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHH------CCCCEEEEEeccCCCCcccHHHHHHHHHHHHh-
Confidence 68999999999986521 11 34799999999987654 256777775424422 235678888886653
Q ss_pred cCCCCCCCeEEE-EcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEE
Q 011810 295 QGLHFSPRKVTV-STSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLF 371 (477)
Q Consensus 295 ~Gl~i~~r~Itv-sTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~i 371 (477)
.+.+ +.+ .++|.. +.+++|.+.+-..+.+.+++. ++.+.++.+ ..++++.++.++. ..+.|. .+
T Consensus 87 ~~p~-----l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~-~~~~~~i~~---~~~~~~~l~~i~~--a~~~Gi--~v 153 (279)
T PRK08508 87 EVPG-----LHLIACNGTASVEQLKELKKAGIFSYNHNLETS-KEFFPKICT---THTWEERFQTCEN--AKEAGL--GL 153 (279)
T ss_pred hCCC-----cEEEecCCCCCHHHHHHHHHcCCCEEcccccch-HHHhcCCCC---CCCHHHHHHHHHH--HHHcCC--ee
Confidence 3333 343 578874 578888888754556777874 455554443 3568999999996 456664 45
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCe-EEEEeecCCCCCCC--CCCcHHHHHHHHHHHHhCCCeEEecCCCCCc
Q 011810 372 EYVMLAGVNDSFDDAKRLIGLVQGIPCK-INLISFNPHCGSQF--TPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444 (477)
Q Consensus 372 eyvLI~GvNDs~ed~~~La~ll~~l~~~-VnLipynp~~~~~~--~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~d 444 (477)
...+|.|.+++.++..+++.++++++.. |-+-.++|.++.++ .+++.++..+...+++-.--+..||-..|++
T Consensus 154 ~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~ 229 (279)
T PRK08508 154 CSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGRE 229 (279)
T ss_pred cceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChh
Confidence 5578889999999999999999998764 54444667666543 3556666666655554432245666666663
No 64
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.29 E-value=4.9e-10 Score=120.17 Aligned_cols=185 Identities=20% Similarity=0.320 Sum_probs=130.4
Q ss_pred CceeEEEEecCccCCCCCCCCCCC-CCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec-----CCcccCCHHHHHH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGR-MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIK 286 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~-~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G-----mGEPLln~d~vi~ 286 (477)
++....+..+.|||++|.||..+. .|..+..+++++++++....+ .++..|+|+| .|+|+.+.+.+.+
T Consensus 153 ~~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~------~G~keI~l~g~~~~~yG~d~~~~~~l~~ 226 (459)
T PRK14338 153 PPVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAA------RGAKEITLLGQIVDSYGHDLPGRPDLAD 226 (459)
T ss_pred CceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHH------CCCeEEEEeeecCCCcccccCChHHHHH
Confidence 345667777899999999999775 344578899999999987543 3688899988 4777755455777
Q ss_pred HHHHHHHhcCCCCCCCeEEEEc-CC--chHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 287 AANIMVHEQGLHFSPRKVTVST-SG--LVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 287 ~i~~l~~~~Gl~i~~r~ItvsT-NG--i~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
+++.+.+..|+. ++.+.| +. +.+.+.+++... -..+.+++.+.+++..+.+ ++.++.++++++++.
T Consensus 227 Ll~~l~~~~gi~----~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m---~R~~t~e~~~~~i~~- 298 (459)
T PRK14338 227 LLEAVHEIPGLE----RLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRM---RRGYTVARYRELIAR- 298 (459)
T ss_pred HHHHHHhcCCcc----eEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhc---cCCCCHHHHHHHHHH-
Confidence 777665534542 355443 43 335554554432 2456789999999988753 456789999999997
Q ss_pred HHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 361 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ ++....+.+..-+|-|+ +++.+++++..++++.++. .+++.+|.|.+++.
T Consensus 299 l-r~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~ 351 (459)
T PRK14338 299 I-REAIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTL 351 (459)
T ss_pred H-HHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCCCCh
Confidence 3 44433445544444332 4889999999999999875 78899999987763
No 65
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.28 E-value=2.7e-10 Score=121.53 Aligned_cols=182 Identities=13% Similarity=0.278 Sum_probs=127.5
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-----------------C
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----------------G 275 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-----------------G 275 (477)
+....+.++.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.|. |
T Consensus 138 ~~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~------~g~kei~l~~~d~~~yg~d~~~~~~~~~~ 211 (440)
T PRK14862 138 RHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVK------AGVKELLVISQDTSAYGVDVKYRTGFWNG 211 (440)
T ss_pred CcEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHH------CCCceEEEEecChhhhccccccccccccc
Confidence 344566779999999999997753 34578899999999987543 25667777642 3
Q ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCCeE-EEEcCCchHHHHHHHhcCCe--EEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011810 276 EPLHNVENVIKAANIMVHEQGLHFSPRKV-TVSTSGLVPQLKQFLNESNC--ALAVSLNATTDEVRNWIMPINRKYKLGL 352 (477)
Q Consensus 276 EPLln~d~vi~~i~~l~~~~Gl~i~~r~I-tvsTNGi~p~i~~L~~~~d~--~LaISL~a~~~e~r~~I~pi~~~~~le~ 352 (477)
+|+ .+.+.++++.+.+. |+. -++ ++.+++..+++.+++..+.+ .+.+++.+.+++..+.+ ++.++.++
T Consensus 212 ~~~--~~~~~~Ll~~l~~~-~~~---~r~~~~~p~~~~dell~~m~~g~~~~~l~IglESgs~~vLk~m---~r~~~~~~ 282 (440)
T PRK14862 212 RPV--KTRMTDLCEALGEL-GAW---VRLHYVYPYPHVDEVIPLMAEGKILPYLDIPFQHASPRVLKRM---KRPASVEK 282 (440)
T ss_pred cch--hhHHHHHHHHHHhc-CCE---EEEecCCCCcCCHHHHHHHhcCCCccccccccccCCHHHHHhc---CCCCCHHH
Confidence 344 24677877766543 541 123 24556666666666655533 66789999999888753 46788899
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 353 LIETLREELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 353 ile~l~~~l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+++.++. + ++....+.+...+|-|+ ++++++++++.+|+++++. .+++.+|.|.+++.
T Consensus 283 ~~~~i~~-l-r~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~ 342 (440)
T PRK14862 283 TLERIKK-W-REICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGAT 342 (440)
T ss_pred HHHHHHH-H-HHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCc
Confidence 9999987 3 44434455555555342 4889999999999999875 78899999998764
No 66
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.28 E-value=2.8e-10 Score=118.69 Aligned_cols=190 Identities=14% Similarity=0.180 Sum_probs=134.0
Q ss_pred ecCccCCCCCCCCCCCC-CC-CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc--CCHHHHHHHHHHHHHhcC
Q 011810 221 SQVGCAMNCQFCYTGRM-GL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL--HNVENVIKAANIMVHEQG 296 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~-g~-~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL--ln~d~vi~~i~~l~~~~G 296 (477)
.+.+|+.+|.||..... .. ...++.+||.+.+..+.+ .+++.|.+.| ||+. ...+.+.++++.+.+...
T Consensus 79 ~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~------~Gv~~i~lvg-Ge~p~~~~~e~l~eii~~Ik~~~p 151 (366)
T TIGR02351 79 LSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKK------SGFKEILLVT-GESEKAAGVEYIAEAIKLAREYFS 151 (366)
T ss_pred ECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHh------CCCCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCC
Confidence 47999999999996532 12 245899999999887654 3688888888 7744 457889999997765421
Q ss_pred CCCCCCeEEEEcCCc-hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEE
Q 011810 297 LHFSPRKVTVSTSGL-VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375 (477)
Q Consensus 297 l~i~~r~ItvsTNGi-~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvL 375 (477)
.+.++.+-+ .+.+++|.+.+-..+.+++++.+++.+.++.+..++.++++.+++++. +.+.|.+ .+...+
T Consensus 152 ------~i~Iei~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~--a~~aG~~-~v~~g~ 222 (366)
T TIGR02351 152 ------SLAIEVQPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPER--AAKAGMR-KIGIGA 222 (366)
T ss_pred ------ccccccccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHH--HHHcCCC-eeceeE
Confidence 123333323 367888888885577899999999999999987777889999999997 4667754 133477
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC-------eEEEEeecCCCCCCC---CCCcHHHHHHHHHH
Q 011810 376 LAGVNDSFDDAKRLIGLVQGIPC-------KINLISFNPHCGSQF---TPTTDEKMIEFRNI 427 (477)
Q Consensus 376 I~GvNDs~ed~~~La~ll~~l~~-------~VnLipynp~~~~~~---~~ps~e~l~~f~~~ 427 (477)
|-|++++.++.-+++..++.+.. .|.+..++|..+ .+ .+.++.++.+....
T Consensus 223 i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~ 283 (366)
T TIGR02351 223 LLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICA 283 (366)
T ss_pred EEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHH
Confidence 88999999999888888765532 345445677766 44 33445444444333
No 67
>PRK05481 lipoyl synthase; Provisional
Probab=99.24 E-value=2.1e-09 Score=108.79 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=138.6
Q ss_pred ecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc----ccCCHHHHHHHHHHHHHhc-
Q 011810 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE----PLHNVENVIKAANIMVHEQ- 295 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE----PLln~d~vi~~i~~l~~~~- 295 (477)
.+.||+.+|.||..+... ++.++++||++++....+ .+++.|++.| |+ |-...+.+.++++.+.+..
T Consensus 59 is~GC~~~C~FC~i~~~r-~~s~~~eeI~~ea~~l~~------~G~kEI~L~g-g~~~d~~~~~~~~l~~Ll~~I~~~~p 130 (289)
T PRK05481 59 LGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVAR------MGLKYVVITS-VDRDDLPDGGAQHFAETIRAIRELNP 130 (289)
T ss_pred ecccccCCCCCceeCCCC-CCCCCHHHHHHHHHHHHH------CCCCEEEEEE-eeCCCcccccHHHHHHHHHHHHhhCC
Confidence 489999999999977643 467899999999987643 4789999999 76 3233456777777665532
Q ss_pred CCCCCCCeEEEEcC-Cc--hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE
Q 011810 296 GLHFSPRKVTVSTS-GL--VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372 (477)
Q Consensus 296 Gl~i~~r~ItvsTN-Gi--~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie 372 (477)
++ +|.+.|. .. .+.+.++.+.+...+ -.++-+.++.++++. ++++.++.++.++. ..+.-..+.+.
T Consensus 131 ~i-----rI~~l~~~~~~~~e~L~~l~~ag~~i~-~~~~ets~~vlk~m~---r~~t~e~~le~i~~--ar~~~pgi~~~ 199 (289)
T PRK05481 131 GT-----TIEVLIPDFRGRMDALLTVLDARPDVF-NHNLETVPRLYKRVR---PGADYERSLELLKR--AKELHPGIPTK 199 (289)
T ss_pred Cc-----EEEEEccCCCCCHHHHHHHHhcCccee-eccccChHHHHHHhC---CCCCHHHHHHHHHH--HHHhCCCCeEe
Confidence 33 3666554 22 367888887763332 334445567777655 35788999999986 34442235555
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC---CCCcHHHHHHHHHHHHhCCCe
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---TPTTDEKMIEFRNILAGAGCT 434 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~---~~ps~e~l~~f~~~L~~~Gi~ 434 (477)
..+|=|+.++++|..+..+++++++. .+++.+|.|.....+ ....+++.+++.++..+-|+.
T Consensus 200 t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~ 265 (289)
T PRK05481 200 SGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDEYKEIALELGFL 265 (289)
T ss_pred eeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHHHHHHHHHcCch
Confidence 66777889999999999999999985 789999988322122 234468888888999999985
No 68
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=99.19 E-value=1.5e-10 Score=105.95 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=66.7
Q ss_pred ecCccCCCCCCCCCCCC---CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCC
Q 011810 221 SQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGL 297 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~---g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl 297 (477)
+..|||++|+||+++.. ..++.++.+++++++.... ..+..|+|+| || ++++.+.++++.+ ++.|+
T Consensus 21 fl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-------~~~~gVt~SG-GE--l~~~~l~~ll~~l-k~~Gl 89 (147)
T TIGR02826 21 YITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-------SLISCVLFLG-GE--WNREALLSLLKIF-KEKGL 89 (147)
T ss_pred EeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-------CCCCEEEEec-hh--cCHHHHHHHHHHH-HHCCC
Confidence 36899999999999754 2246799999999987642 2356899999 99 6778899999864 56688
Q ss_pred CCCCCeEEEEcCCchHH-HHHHHhcCCe
Q 011810 298 HFSPRKVTVSTSGLVPQ-LKQFLNESNC 324 (477)
Q Consensus 298 ~i~~r~ItvsTNGi~p~-i~~L~~~~d~ 324 (477)
. +.+.|||+.+. ..++++..|.
T Consensus 90 ~-----i~l~Tg~~~~~~~~~il~~iD~ 112 (147)
T TIGR02826 90 K-----TCLYTGLEPKDIPLELVQHLDY 112 (147)
T ss_pred C-----EEEECCCCCHHHHHHHHHhCCE
Confidence 6 99999987654 3456655554
No 69
>PRK15108 biotin synthase; Provisional
Probab=99.19 E-value=4.7e-09 Score=108.76 Aligned_cols=182 Identities=16% Similarity=0.231 Sum_probs=128.6
Q ss_pred cCccCCCCCCCCCCCC---CC--CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC-cc-cCCHHHHHHHHHHHHHh
Q 011810 222 QVGCAMNCQFCYTGRM---GL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EP-LHNVENVIKAANIMVHE 294 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~---g~--~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG-EP-Lln~d~vi~~i~~l~~~ 294 (477)
+.+|+.+|.||+.... +. ...++++||++.+..+.+ .+++.|.+.+.| +| ...++.+.++++.++ +
T Consensus 50 Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~------~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik-~ 122 (345)
T PRK15108 50 TGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA------AGSTRFCMGAAWKNPHERDMPYLEQMVQGVK-A 122 (345)
T ss_pred CCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHH------cCCCEEEEEecCCCCCcchHHHHHHHHHHHH-h
Confidence 7999999999997642 22 234899999999876543 367777664423 66 445788889888665 5
Q ss_pred cCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE
Q 011810 295 QGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372 (477)
Q Consensus 295 ~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie 372 (477)
.++. +. .|+|.. +.+++|.+.+-..+.++|++ +++.+.++.+. .++++.++.++. ..+.|.++..
T Consensus 123 ~~i~-----v~-~s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~~---~~~~~rl~~i~~--a~~~G~~v~s- 189 (345)
T PRK15108 123 MGLE-----TC-MTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITT---RTYQERLDTLEK--VRDAGIKVCS- 189 (345)
T ss_pred CCCE-----EE-EeCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCCC---CCHHHHHHHHHH--HHHcCCceee-
Confidence 5653 54 579975 57888888875556799999 78999888753 368999999997 4667765543
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---eEEEEeecCCCCCCCC---CCcHHHHHHH
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPC---KINLISFNPHCGSQFT---PTTDEKMIEF 424 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~---~VnLipynp~~~~~~~---~ps~e~l~~f 424 (477)
-+|=|..++.+|.-+++..++.++. .|-+-+++|.+++++. +.+..+..+.
T Consensus 190 -g~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~ 246 (345)
T PRK15108 190 -GGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 246 (345)
T ss_pred -EEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHH
Confidence 4555778999999999999998843 3444456777776542 3344444433
No 70
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.18 E-value=2e-09 Score=114.28 Aligned_cols=184 Identities=17% Similarity=0.352 Sum_probs=127.3
Q ss_pred ceeEEEEecCccCCCCCCCCCCC-CCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec-----CCcccCCHHHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGR-MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIKA 287 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~-~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G-----mGEPLln~d~vi~~ 287 (477)
+....+.++.|||++|.||..+. .|..|..++++|++++....+ .++..|+|.| .|+.+.+...+.++
T Consensus 138 ~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~------~g~~ei~l~~~~~~~yg~d~~~~~~l~~L 211 (429)
T TIGR00089 138 KTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVS------KGVKEIVLLGQNVGAYGKDLKGETNLADL 211 (429)
T ss_pred CeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHH------CCCceEEEEeeccccccCCCCCCcCHHHH
Confidence 34556667899999999999765 235578899999999987543 2577788876 24443322345666
Q ss_pred HHHHHHhcCCCCCCCeEEEEcC---CchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011810 288 ANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361 (477)
Q Consensus 288 i~~l~~~~Gl~i~~r~ItvsTN---Gi~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l 361 (477)
++.+.+..|+. .+.+.+. .+.+.+.+++... -..+.+.+.+.+++..+. .++.++.+++.+.++.
T Consensus 212 l~~l~~~~g~~----~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~---m~R~~~~~~~~~~i~~-- 282 (429)
T TIGR00089 212 LRELSKIDGIE----RIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKR---MNRKYTREEYLDIVEK-- 282 (429)
T ss_pred HHHHhcCCCCC----EEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHh---CCCCCCHHHHHHHHHH--
Confidence 66554333442 4666542 2345555555442 246679999999988765 3467889999999986
Q ss_pred HhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 362 HFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 362 ~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
.++.+..+.+..-+|-|+ ++++++++++.+|++.++. .+++.+|.|.+++.
T Consensus 283 lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pgT~ 335 (429)
T TIGR00089 283 IRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTP 335 (429)
T ss_pred HHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCCCCc
Confidence 355554455555555453 5899999999999999874 78999999988764
No 71
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.18 E-value=6.6e-09 Score=108.84 Aligned_cols=201 Identities=12% Similarity=0.188 Sum_probs=134.2
Q ss_pred ccCCCCCCCCCCCCCCCcCCCHHH----HHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCC
Q 011810 224 GCAMNCQFCYTGRMGLKRHLTAAE----IVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLH 298 (477)
Q Consensus 224 GCnl~C~FC~tg~~g~~r~Lt~eE----Iv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~ 298 (477)
=|+.+|.||...........+.++ +++++........ +.++..|.|.| |+|++ ..+.+.++++.+.+..++.
T Consensus 15 FC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~--~~~v~ti~~GG-GtPs~l~~~~l~~ll~~l~~~~~~~ 91 (378)
T PRK05660 15 WCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQ--GREVHSIFIGG-GTPSLFSAEAIQRLLDGVRARLPFA 91 (378)
T ss_pred CccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhcc--CCceeEEEeCC-CccccCCHHHHHHHHHHHHHhCCCC
Confidence 399999999965432223344344 4444442222121 24688888877 99998 4667888888776654442
Q ss_pred CCCCeEEEEcCCc-h--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEE
Q 011810 299 FSPRKVTVSTSGL-V--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVM 375 (477)
Q Consensus 299 i~~r~ItvsTNGi-~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvL 375 (477)
....++++||+- + +.+..|.+.+-..|.+++++.+++..+.+. +.++.++++++++. .++.|... +.+-+
T Consensus 92 -~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~---r~~~~~~~~~ai~~--~~~~G~~~-v~~dl 164 (378)
T PRK05660 92 -PDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLG---RIHGPDEAKRAAKL--AQGLGLRS-FNLDL 164 (378)
T ss_pred -CCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhC---CCCCHHHHHHHHHH--HHHcCCCe-EEEEe
Confidence 224699999963 2 567777777766788999999999988764 45689999999996 46666532 33334
Q ss_pred eCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC-----CCCcHH----HHHHHHHHHHhCCCe
Q 011810 376 LAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF-----TPTTDE----KMIEFRNILAGAGCT 434 (477)
Q Consensus 376 I~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~-----~~ps~e----~l~~f~~~L~~~Gi~ 434 (477)
|-|+ ..+.+++.+..+++..+++ +|.+.++.+.+++.+ ..|+.+ ..+...+.|.+.|+.
T Consensus 165 i~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 234 (378)
T PRK05660 165 MHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ 234 (378)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc
Confidence 4332 2678899999999988864 888888887766533 124433 233445778888875
No 72
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.18 E-value=5.2e-09 Score=112.52 Aligned_cols=178 Identities=16% Similarity=0.253 Sum_probs=128.0
Q ss_pred eEEEEecCccCCCCCCCCCCCC--C-CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 216 TVCVSSQVGCAMNCQFCYTGRM--G-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 216 tlCVSsq~GCnl~C~FC~tg~~--g-~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
...+.++.||+.+|.||..+.. + .-|..+++.+++++....+.+ .++..|.|.+ +.++.+.+.+.++++.+.
T Consensus 197 ~~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~----~~~~~i~f~D-d~f~~~~~~~~~l~~~l~ 271 (472)
T TIGR03471 197 YISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENF----PEVREFFFDD-DTFTDDKPRAEEIARKLG 271 (472)
T ss_pred eEEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhc----CCCcEEEEeC-CCCCCCHHHHHHHHHHHh
Confidence 3456678999999999986532 2 236679999999998765432 3677888877 778888888888888664
Q ss_pred HhcCCCCCCCeEEEEcCC-chHH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEE
Q 011810 293 HEQGLHFSPRKVTVSTSG-LVPQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 370 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNG-i~p~-i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ 370 (477)
+.|+. ....+.. +.++ ++.+.+.+-..+.+.+.+.+++..+.+ ++..+.+++.++++. .++.|..+.
T Consensus 272 -~~~i~-----~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~---~K~~~~~~~~~~i~~--~~~~Gi~v~ 340 (472)
T TIGR03471 272 -PLGVT-----WSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNI---KKGLTVEIARRFTRD--CHKLGIKVH 340 (472)
T ss_pred -hcCce-----EEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh---cCCCCHHHHHHHHHH--HHHCCCeEE
Confidence 34543 3333322 3344 455555565567899999999988765 456678999999986 567787776
Q ss_pred EEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC
Q 011810 371 FEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS 411 (477)
Q Consensus 371 ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~ 411 (477)
..+++ +|| ++.+++++..+++..++. .+++..+.|.+++
T Consensus 341 ~~~IiGlPg--et~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT 381 (472)
T TIGR03471 341 GTFILGLPG--ETRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred EEEEEeCCC--CCHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 66544 244 889999999999998864 5666677787776
No 73
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=99.17 E-value=2e-10 Score=105.79 Aligned_cols=104 Identities=21% Similarity=0.329 Sum_probs=66.6
Q ss_pred EecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe
Q 011810 196 MLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM 272 (477)
Q Consensus 196 ~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~ 272 (477)
.+.||++++++++ ..|||++|+||+++... .++.++ .+.++++........ .....|+|+
T Consensus 10 ~~~~GpG~r~~if-------------~~GCnl~C~~C~n~~~~~~~~g~~~~-~~~~~~il~~~~~~~---~~~~gvt~s 72 (154)
T PRK11121 10 DVVNGPGTRCTLF-------------VSGCVHQCPGCYNKSTWRLNSGHPFT-KEMEDQIIADLNDTR---IKRQGLSLS 72 (154)
T ss_pred CeecCCCcEEEEE-------------cCCCCCcCcCCCChhhccCCCCcccC-HHHHHHHHHHHHHhC---CCCCcEEEE
Confidence 4678999988877 59999999999997542 233345 345555554332211 123578899
Q ss_pred cCCcccC--CHHHHHHHHHHHHHhc-CCCCCCCeEEEEcCCch-HHH----HHHHhcCC
Q 011810 273 GMGEPLH--NVENVIKAANIMVHEQ-GLHFSPRKVTVSTSGLV-PQL----KQFLNESN 323 (477)
Q Consensus 273 GmGEPLl--n~d~vi~~i~~l~~~~-Gl~i~~r~ItvsTNGi~-p~i----~~L~~~~d 323 (477)
| ||||+ |.+.+.++++.+.+.. +. .| +.|||+. +++ .++++..|
T Consensus 73 G-GEPl~~~~~~~l~~l~~~~k~~~~~~-----~i-~~~tGy~~eel~~~~~~~l~~~D 124 (154)
T PRK11121 73 G-GDPLHPQNVPDILKLVQRVKAECPGK-----DI-WVWTGYKLDELNAAQRQVVDLID 124 (154)
T ss_pred C-CCccchhhHHHHHHHHHHHHHHCCCC-----CE-EEecCCCHHHHHHHHHHHHhhCC
Confidence 9 99998 4577888888655442 23 24 5579974 333 34555555
No 74
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.17 E-value=6.3e-09 Score=108.15 Aligned_cols=199 Identities=15% Similarity=0.241 Sum_probs=129.9
Q ss_pred ccCCCCCCCCCCCCCCCcCCCHHH----HHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCC
Q 011810 224 GCAMNCQFCYTGRMGLKRHLTAAE----IVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLH 298 (477)
Q Consensus 224 GCnl~C~FC~tg~~g~~r~Lt~eE----Iv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~ 298 (477)
-|+.+|.||......... -..++ +..++....+.+. ...+..|.|.| |+|++ ..+.+.++++.+.+...+.
T Consensus 9 FC~~~C~yC~f~~~~~~~-~~~~~y~~~l~~Ei~~~~~~~~--~~~v~~i~~GG-GtPs~l~~~~l~~ll~~i~~~~~~~ 84 (360)
T TIGR00539 9 FCENKCGYCDFNSYENKS-GPKEEYTQALCQDLKHALSQTD--QEPLESIFIGG-GTPNTLSVEAFERLFESIYQHASLS 84 (360)
T ss_pred CCcCcCCCCCCcccCcCc-cCHHHHHHHHHHHHHHHHHhcC--CCcccEEEeCC-CchhcCCHHHHHHHHHHHHHhCCCC
Confidence 499999999965432111 12232 3333332212121 13477888877 99985 5677777777664433322
Q ss_pred CCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEEE
Q 011810 299 FSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYV 374 (477)
Q Consensus 299 i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~ieyv 374 (477)
....+++.||+- . +.++.|.+.+-..|.+++++.+++..+.+ ++.++.++++++++. .++.|.. +.+-.+
T Consensus 85 -~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~~~~~~~~ai~~--l~~~G~~~v~~dli 158 (360)
T TIGR00539 85 -DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQHSAKNIAPAIET--ALKSGIENISLDLM 158 (360)
T ss_pred -CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCCCHHHHHHHHHH--HHHcCCCeEEEecc
Confidence 123699999974 2 46666767676678899999999998876 356789999999996 4666653 444322
Q ss_pred E-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC-----CCCcHHHHH----HHHHHHHhCCCe
Q 011810 375 M-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF-----TPTTDEKMI----EFRNILAGAGCT 434 (477)
Q Consensus 375 L-I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~-----~~ps~e~l~----~f~~~L~~~Gi~ 434 (477)
+ +|| ++.+++.+..+++..+++ +|.+.++.|.+++.+ ..|+.++.. ...+.|.+.|+.
T Consensus 159 ~GlPg--qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 227 (360)
T TIGR00539 159 YGLPL--QTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFK 227 (360)
T ss_pred CCCCC--CCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCc
Confidence 2 344 678899999999998875 888888888877532 234444333 344668888875
No 75
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.17 E-value=4.8e-11 Score=103.99 Aligned_cols=83 Identities=29% Similarity=0.532 Sum_probs=45.0
Q ss_pred cCccCCCCCCCCCCC---CCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc--CCHHHHHHHHHHHHHhcC
Q 011810 222 QVGCAMNCQFCYTGR---MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL--HNVENVIKAANIMVHEQG 296 (477)
Q Consensus 222 q~GCnl~C~FC~tg~---~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL--ln~d~vi~~i~~l~~~~G 296 (477)
+.+||++|.||++.. ......++.+++.+.+...... ......|+|+| |||| ++++.+.++++.+. +.+
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~v~~~G-GEPll~~~~~~l~~~i~~~~-~~~ 78 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEK----GFRPSTVVFTG-GEPLLYLNPEDLIELIEYLK-ERG 78 (119)
T ss_dssp -S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHT----T----EEEEES-SSGGGSTTHHHHHHHHCTST-T--
T ss_pred cCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhc----CCceEEEEEEC-CCCccccCHHHHHHHHHHHH-hhC
Confidence 689999999999854 2234556666666666533221 12346799999 9999 66777888888543 344
Q ss_pred CCCCCCeEEEEcCCchH
Q 011810 297 LHFSPRKVTVSTSGLVP 313 (477)
Q Consensus 297 l~i~~r~ItvsTNGi~p 313 (477)
....+.+.|||+.+
T Consensus 79 ---~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 79 ---PEIKIRIETNGTLP 92 (119)
T ss_dssp ------EEEEEE-STTH
T ss_pred ---CCceEEEEeCCeec
Confidence 12369999999875
No 76
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.17 E-value=8.1e-09 Score=110.62 Aligned_cols=201 Identities=10% Similarity=0.167 Sum_probs=133.2
Q ss_pred ccCCCCCCCCCCCCCC-CcCC---CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCC
Q 011810 224 GCAMNCQFCYTGRMGL-KRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLH 298 (477)
Q Consensus 224 GCnl~C~FC~tg~~g~-~r~L---t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~ 298 (477)
-|+.+|.||....... .+.. ..+.+++++....+.+. ...+++.|.|.| |+|++ +.+.+.++++.+.+..++.
T Consensus 58 FC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~-~~~~v~~i~~gG-GtPs~l~~~~l~~ll~~l~~~~~~~ 135 (453)
T PRK09249 58 FCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLG-PGRPVSQLHWGG-GTPTFLSPEQLRRLMALLREHFNFA 135 (453)
T ss_pred CccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhC-CCCceEEEEECC-cccccCCHHHHHHHHHHHHHhCCCC
Confidence 3999999998654321 1111 23455666654433332 124688899988 99996 6788888888776554432
Q ss_pred CCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCC-eEEEEEE
Q 011810 299 FSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY-KVLFEYV 374 (477)
Q Consensus 299 i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~-~V~ieyv 374 (477)
....+++.||+. . +.++.+.+.+-..|.|++++.+++..+.+. +.++.++++++++. .++.|. .+.+..+
T Consensus 136 -~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~---r~~~~~~~~~ai~~--l~~~G~~~v~~dli 209 (453)
T PRK09249 136 -PDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVN---RIQPFEFTFALVEA--ARELGFTSINIDLI 209 (453)
T ss_pred -CCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhC---CCCCHHHHHHHHHH--HHHcCCCcEEEEEE
Confidence 124699999974 3 456666666656778999999999887654 45678999999996 455665 4444433
Q ss_pred E-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC--------CCCCCcHHHHH----HHHHHHHhCCCe
Q 011810 375 M-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS--------QFTPTTDEKMI----EFRNILAGAGCT 434 (477)
Q Consensus 375 L-I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~--------~~~~ps~e~l~----~f~~~L~~~Gi~ 434 (477)
+ +|| ++.+++++..+++..+++ +|.+.++.+.+.. ....|+.++.. ...+.|.+.|+.
T Consensus 210 ~GlPg--qt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 281 (453)
T PRK09249 210 YGLPK--QTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ 281 (453)
T ss_pred ccCCC--CCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 2 355 678899999999998864 7888877633221 12335555533 445677888985
No 77
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.16 E-value=1.8e-09 Score=111.55 Aligned_cols=162 Identities=22% Similarity=0.283 Sum_probs=116.3
Q ss_pred EEecCccCCCCCCCCCCCC-C--CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC-cccCCHHHHHHHHHHHHHh
Q 011810 219 VSSQVGCAMNCQFCYTGRM-G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHNVENVIKAANIMVHE 294 (477)
Q Consensus 219 VSsq~GCnl~C~FC~tg~~-g--~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG-EPLln~d~vi~~i~~l~~~ 294 (477)
+.++.+|+.+|.||..... + ....++++||++.+..+.+ .+++.|.|.| | +|....+.+.++++.+.+.
T Consensus 43 i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~------~G~~~i~l~g-G~~p~~~~~~~~~i~~~Ik~~ 115 (343)
T TIGR03551 43 INFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWK------AGATEVCIQG-GIHPDLDGDFYLDILRAVKEE 115 (343)
T ss_pred cccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH------CCCCEEEEEe-CCCCCCCHHHHHHHHHHHHHH
Confidence 3347999999999996542 1 1134899999999987654 3688899998 6 7778888889999977654
Q ss_pred c-CCCCCCCeEEE----------EcCCch--HHHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 295 Q-GLHFSPRKVTV----------STSGLV--PQLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 295 ~-Gl~i~~r~Itv----------sTNGi~--p~i~~L~~~~d~~La-ISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
. ++. +.. .++|+. +.+++|.+.+-..+. .+....+++.++++.|. +.+.++.+++++.
T Consensus 116 ~~~i~-----~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~--~~~~~~~~~~i~~- 187 (343)
T TIGR03551 116 VPGMH-----IHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPD--KLSTAEWIEIIKT- 187 (343)
T ss_pred CCCce-----EEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCC--CCCHHHHHHHHHH-
Confidence 2 332 433 256764 467888887722222 34566778888888864 3467888999996
Q ss_pred HHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011810 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 398 (477)
..+.|.++.- .+|-|..++.++..+.+.++++++.
T Consensus 188 -a~~~Gi~v~s--~~i~G~~Et~ed~~~~l~~lr~l~~ 222 (343)
T TIGR03551 188 -AHKLGIPTTA--TIMYGHVETPEHWVDHLLILREIQE 222 (343)
T ss_pred -HHHcCCcccc--eEEEecCCCHHHHHHHHHHHHHhhH
Confidence 5777776644 4455777899999999999998864
No 78
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.16 E-value=6.7e-09 Score=111.14 Aligned_cols=182 Identities=14% Similarity=0.266 Sum_probs=128.8
Q ss_pred eeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCH---HHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV---ENVIKAANI 290 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~---d~vi~~i~~ 290 (477)
....+.++.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|.| .+-..+. ..+.++++.
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~------~G~kei~l~~-~~~~~y~~~~~~l~~Ll~~ 226 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQE------KGIRQVTLLG-QNVNSYKEQSTDFAGLIQM 226 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH------CCCeEEEEec-ccCCcccCCcccHHHHHHH
Confidence 34567778999999999998753 34578899999999987543 3788999988 5544432 135555655
Q ss_pred HHHhcCCCCCCCeEEEEc---CCchHHHHHHHhc-C--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh
Q 011810 291 MVHEQGLHFSPRKVTVST---SGLVPQLKQFLNE-S--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364 (477)
Q Consensus 291 l~~~~Gl~i~~r~ItvsT---NGi~p~i~~L~~~-~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~ 364 (477)
+.+..|+ .++.+++ ..+.+.+.+++.. + -..+.+.+.+.+++..+++ ++.++.+++.++++. + ++
T Consensus 227 l~~~~~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m---~R~~t~~~~~~~i~~-l-r~ 297 (449)
T PRK14332 227 LLDETTI----ERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEM---KRSYSKEEFLDVVKE-I-RN 297 (449)
T ss_pred HhcCCCc----ceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhh---CCCCCHHHHHHHHHH-H-HH
Confidence 5443343 2566665 2344565555543 3 2367799999999887653 567889999999997 3 44
Q ss_pred cCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 365 NNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 365 ~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
....+.+.+-+|-|+ ++++++++++.++++.++. .+++.+|.|.+++.
T Consensus 298 ~~p~i~i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~GT~ 347 (449)
T PRK14332 298 IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSEREGTM 347 (449)
T ss_pred hCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCCh
Confidence 444455656566554 5899999999999999874 78999999988763
No 79
>PLN02389 biotin synthase
Probab=99.15 E-value=6.8e-09 Score=108.74 Aligned_cols=184 Identities=16% Similarity=0.274 Sum_probs=130.6
Q ss_pred cCccCCCCCCCCCCCC---CC--CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe-----cCCcccCCHHHHHHHHHHH
Q 011810 222 QVGCAMNCQFCYTGRM---GL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM-----GMGEPLHNVENVIKAANIM 291 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~---g~--~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~-----GmGEPLln~d~vi~~i~~l 291 (477)
+.+|+.+|.||+.... +. ...++++||++.+..+.+ .+++.+.+. +.|||.. ++.+.++++.+
T Consensus 90 T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~------~G~~~~~ivts~rg~~~e~~~-~e~i~eiir~i 162 (379)
T PLN02389 90 TGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKE------AGSTRFCMGAAWRDTVGRKTN-FNQILEYVKEI 162 (379)
T ss_pred cCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHH------cCCCEEEEEecccCCCCChhH-HHHHHHHHHHH
Confidence 6999999999986532 22 235899999999887643 245555542 2366664 68899999977
Q ss_pred HHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeE
Q 011810 292 VHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369 (477)
Q Consensus 292 ~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V 369 (477)
+ +.++. +. .|+|+. +.+++|.+.+-..+.++|++ .++.+.++.+. .++++.+++++. ..+.|.++
T Consensus 163 k-~~~l~-----i~-~s~G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~---~s~e~rl~ti~~--a~~~Gi~v 229 (379)
T PLN02389 163 R-GMGME-----VC-CTLGMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVITT---RSYDDRLETLEA--VREAGISV 229 (379)
T ss_pred h-cCCcE-----EE-ECCCCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCC---CCHHHHHHHHHH--HHHcCCeE
Confidence 5 55653 44 588975 57888888875456789999 46788777753 368999999996 46677655
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC---eEEEEeecCCCCCCC---CCCcHHHHHHHHHH
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC---KINLISFNPHCGSQF---TPTTDEKMIEFRNI 427 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~---~VnLipynp~~~~~~---~~ps~e~l~~f~~~ 427 (477)
. ..+|-|.+++.+|..++..+++.++. .|.+-+++|.+++++ ++++.++..+...+
T Consensus 230 ~--sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi 291 (379)
T PLN02389 230 C--SGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIAT 291 (379)
T ss_pred e--EEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHH
Confidence 4 45677889999999999999998842 466666778887753 45666665444433
No 80
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.15 E-value=7.6e-09 Score=107.28 Aligned_cols=197 Identities=15% Similarity=0.204 Sum_probs=132.7
Q ss_pred cCCCCCCCCCCCCCCCcCC---CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc-CCHHHHHHHHHHHHHhcCCCCC
Q 011810 225 CAMNCQFCYTGRMGLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHEQGLHFS 300 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~~r~L---t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL-ln~d~vi~~i~~l~~~~Gl~i~ 300 (477)
|+.+|.||........+.+ ..+.+++++....+.+. ..++..|.|-| |+|+ ++.+.+.++++.+.+. +. .
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~--~~~v~~iyfGG-GTPs~l~~~~l~~ll~~i~~~--~~-~ 83 (350)
T PRK08446 10 CESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFT--DEKIESVFIGG-GTPSTVSAKFYEPIFEIISPY--LS-K 83 (350)
T ss_pred ccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhcc--CCceeEEEECC-CccccCCHHHHHHHHHHHHHh--cC-C
Confidence 9999999986543211111 34555566554332221 24687787777 9997 5777777777765443 21 1
Q ss_pred CCeEEEEcCCc---hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEEEE-
Q 011810 301 PRKVTVSTSGL---VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM- 375 (477)
Q Consensus 301 ~r~ItvsTNGi---~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~ieyvL- 375 (477)
...+++.+|.. .+.++.+.+.+-..|.+.+.+.+++..+.+ ++.++.++++++++. .++.|.. |.+-.++
T Consensus 84 ~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~~~~~~~ai~~--lr~~g~~~v~iDli~G 158 (350)
T PRK08446 84 DCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHSQKQIIKAIEN--AKKAGFENISIDLIYD 158 (350)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCEEEEEeecC
Confidence 23599999974 246666666666677899999999887654 456788999999996 4666653 4444332
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC------CCCcHHHHHHHHHHHHhCCCe
Q 011810 376 LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF------TPTTDEKMIEFRNILAGAGCT 434 (477)
Q Consensus 376 I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~------~~ps~e~l~~f~~~L~~~Gi~ 434 (477)
+|| .+.+++++..+++..+++ +|.+.++.+.+++.+ .+...+....+.+.|.+.|+.
T Consensus 159 lPg--qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 222 (350)
T PRK08446 159 TPL--DNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFK 222 (350)
T ss_pred CCC--CCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCc
Confidence 365 568899999999888864 788888887766543 133445666778889999975
No 81
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.15 E-value=4.6e-09 Score=113.78 Aligned_cols=179 Identities=11% Similarity=0.180 Sum_probs=130.1
Q ss_pred EEEEecCccCCCCCCCCCCCCC-CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhc
Q 011810 217 VCVSSQVGCAMNCQFCYTGRMG-LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295 (477)
Q Consensus 217 lCVSsq~GCnl~C~FC~tg~~g-~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~ 295 (477)
..+.+..||+++|.||..+... ..|..+++.+++++....+. .++..+.|.+ .+|+.|.+.+.++++.+.+..
T Consensus 195 ~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~-----~gv~~~~~~D-d~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 195 AVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRT-----HGVGFFILAD-EEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred eeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHH-----cCCCEEEEEe-cccccCHHHHHHHHHHHHhcC
Confidence 3455679999999999987643 24667999999999876443 2678899998 999999888888888765432
Q ss_pred CCCCCCCeEEEEcCC--c--hHHH-HHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEE
Q 011810 296 GLHFSPRKVTVSTSG--L--VPQL-KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVL 370 (477)
Q Consensus 296 Gl~i~~r~ItvsTNG--i--~p~i-~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ 370 (477)
.+++ +..++|.. + .+.+ +.+.+.+-..+.+.+.+.+++..+.+ ++..+.+++.++++. .++.|..+.
T Consensus 269 ~l~i---~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~---~K~~t~~~~~~ai~~--l~~~Gi~~~ 340 (497)
T TIGR02026 269 PISV---TWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHF---RKGTTTSTNKEAIRL--LRQHNILSE 340 (497)
T ss_pred CCCe---EEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHh---cCCCCHHHHHHHHHH--HHHCCCcEE
Confidence 2431 23344432 2 2444 44445565677899999999887654 456788999999996 577887776
Q ss_pred EEEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC
Q 011810 371 FEYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS 411 (477)
Q Consensus 371 ieyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~ 411 (477)
..+++ +| +++.+++++..+++..++. .+++..+.|.+++
T Consensus 341 ~~~I~G~P--~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT 381 (497)
T TIGR02026 341 AQFITGFE--NETDETFEETYRQLLDWDPDQANWLMYTPWPFT 381 (497)
T ss_pred EEEEEECC--CCCHHHHHHHHHHHHHcCCCceEEEEecCCCCc
Confidence 65544 24 4889999999999998864 6777778888776
No 82
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.15 E-value=6.1e-09 Score=110.20 Aligned_cols=180 Identities=19% Similarity=0.344 Sum_probs=123.7
Q ss_pred eeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC------HHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN------VENVIKA 287 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln------~d~vi~~ 287 (477)
....|.++.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|.| .+-..+ ...+.++
T Consensus 138 ~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~------~g~~ei~l~~-~~~~~y~~d~~~~~~l~~L 210 (414)
T TIGR01579 138 TRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVA------KGYKEIVLTG-VNLGSYGDDLKNGTSLAKL 210 (414)
T ss_pred eEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHH------CCCceEEEee-EccchhccCCCCCCcHHHH
Confidence 34456668999999999997643 34578899999999986543 3688888887 333322 2346677
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCC---chHHHHHHHh-cC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011810 288 ANIMVHEQGLHFSPRKVTVSTSG---LVPQLKQFLN-ES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361 (477)
Q Consensus 288 i~~l~~~~Gl~i~~r~ItvsTNG---i~p~i~~L~~-~~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l 361 (477)
++.+.+..|+. ++.+++.- +.+.+.+++. .+ -..|.+.+.+.+++..+. ++++++.+++.++++. +
T Consensus 211 l~~l~~~~~~~----~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~---m~R~~~~~~~~~~v~~-l 282 (414)
T TIGR01579 211 LEQILQIPGIK----RIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKR---MRRKYTRDDFLKLVNK-L 282 (414)
T ss_pred HHHHhcCCCCc----EEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHh---cCCCCCHHHHHHHHHH-H
Confidence 76655433432 45655422 2355555554 33 235779999999998765 4567889999999997 3
Q ss_pred Hhh--cCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 362 HFK--NNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 362 ~~~--~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
++ .+.. +..-+|-|+ +++++++++..+|+..++. .+++.+|.|.+++.
T Consensus 283 -~~~~~gi~--i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~ 334 (414)
T TIGR01579 283 -RSVRPDYA--FGTDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARPGTP 334 (414)
T ss_pred -HHhCCCCe--eeeeEEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCCCCc
Confidence 44 4444 443344332 4899999999999999874 78999999998864
No 83
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.14 E-value=9.6e-09 Score=109.69 Aligned_cols=183 Identities=14% Similarity=0.291 Sum_probs=125.4
Q ss_pred CceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec-----C-CcccCCHHHHH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----M-GEPLHNVENVI 285 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G-----m-GEPLln~d~vi 285 (477)
++..+.+.++.|||.+|.||..+.. +..+..++++|++++....+ .++..|+|.| + |++... ..+.
T Consensus 136 ~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~------~G~keI~l~g~~~~~yG~d~~~~-~~~~ 208 (440)
T PRK14334 136 GKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKA------AGVQEVTLLGQNVNSYGVDQPGF-PSFA 208 (440)
T ss_pred CCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHH------CCCeEEEEEeccccccccCCCCc-CCHH
Confidence 5677888889999999999998753 34456799999999987543 2567777765 1 343221 1244
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEc-CC--chHHHHHHHhc-C--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHH
Q 011810 286 KAANIMVHEQGLHFSPRKVTVST-SG--LVPQLKQFLNE-S--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359 (477)
Q Consensus 286 ~~i~~l~~~~Gl~i~~r~ItvsT-NG--i~p~i~~L~~~-~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~ 359 (477)
++++.+. ..|+ .++.+.+ +. +.+.+.+++.. + -..+.+++.+.+++..+. .++.++.+++++.++.
T Consensus 209 ~Ll~~l~-~~~i----~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~---m~R~~~~~~~~~~v~~ 280 (440)
T PRK14334 209 ELLRLVG-ASGI----PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRR---MAREYRREKYLERIAE 280 (440)
T ss_pred HHHHHHH-hcCC----cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHH---hCCCCCHHHHHHHHHH
Confidence 5555442 2343 2466654 22 34555555443 2 346789999999988654 3667888999999997
Q ss_pred HHHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 360 ELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 360 ~l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
.++.+..+.+.+-+|-|+ +++++++++..+++..++. ++++.+|.|.+++.
T Consensus 281 --lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~pGT~ 333 (440)
T PRK14334 281 --IREALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTP 333 (440)
T ss_pred --HHHhCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCCCCh
Confidence 355665666665555442 4789999999999999864 78899999988764
No 84
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.14 E-value=1.4e-08 Score=105.98 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=127.7
Q ss_pred ccCCCCCCCCCCCCCCCcCC---CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCC
Q 011810 224 GCAMNCQFCYTGRMGLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHF 299 (477)
Q Consensus 224 GCnl~C~FC~tg~~g~~r~L---t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~i 299 (477)
=|+.+|.||........... ..+.+++++... . ...++..|.|.| |+|++ +.+.+..+++.+. ..++.
T Consensus 12 fC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~---~--~~~~~~~i~~gG-Gtps~l~~~~l~~L~~~i~-~~~~~- 83 (374)
T PRK05799 12 FCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNS---T--KNKKIKSIFIGG-GTPTYLSLEALEILKETIK-KLNKK- 83 (374)
T ss_pred CccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhh---c--CCCceeEEEECC-CcccCCCHHHHHHHHHHHH-hCCCC-
Confidence 39999999997653221111 244455554321 1 123577777777 99995 6666555555443 33332
Q ss_pred CCCeEEEEcCCc--hH-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEEEE
Q 011810 300 SPRKVTVSTSGL--VP-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM 375 (477)
Q Consensus 300 ~~r~ItvsTNGi--~p-~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~ieyvL 375 (477)
..-.++++||.. .+ .++.+.+.+-..|.|.+.+.+++..+.+ ++.++.++++++++. ..+.+.. +.+- +
T Consensus 84 ~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l---~R~~~~~~~~~ai~~--l~~~g~~~v~~d--l 156 (374)
T PRK05799 84 EDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYL---GRIHTFEEFLENYKL--ARKLGFNNINVD--L 156 (374)
T ss_pred CCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCcEEEE--e
Confidence 123689999973 34 5666666665577899999999988755 456788999999996 4566654 4443 4
Q ss_pred eCCC-CCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCCC---------CCCCcHHH----HHHHHHHHHhCCCe
Q 011810 376 LAGV-NDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ---------FTPTTDEK----MIEFRNILAGAGCT 434 (477)
Q Consensus 376 I~Gv-NDs~ed~~~La~ll~~l~-~~VnLipynp~~~~~---------~~~ps~e~----l~~f~~~L~~~Gi~ 434 (477)
|-|+ +++.+++++..+++..++ .+|.+.++.+.+++. +..|+.++ .+...+.|.+.|+.
T Consensus 157 i~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 230 (374)
T PRK05799 157 MFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYH 230 (374)
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 4443 478999999999999886 478888887776652 34455544 33445778888875
No 85
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.13 E-value=3.4e-09 Score=109.07 Aligned_cols=191 Identities=17% Similarity=0.258 Sum_probs=122.4
Q ss_pred EEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcc-cCCH------------HHH
Q 011810 219 VSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP-LHNV------------ENV 284 (477)
Q Consensus 219 VSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEP-Lln~------------d~v 284 (477)
+..+.+|+.+|.||..... +..+.++++||++++..+.+ .+++.|.|.| ||+ .+.+ ..+
T Consensus 16 i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~------~G~~ei~l~g-G~~p~~~~~~~~~~~~~~g~~~~ 88 (336)
T PRK06245 16 IPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGAD------AGCTEALFTF-GEVPDESYERIKEQLAEMGYSSI 88 (336)
T ss_pred eeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCccchhhhhhhhhhhhHHHH
Confidence 4448999999999986542 33457999999999987654 3788899999 998 4442 234
Q ss_pred HHHHHHHHH---hcCCCCCCCeEEEEcCC--ch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011810 285 IKAANIMVH---EQGLHFSPRKVTVSTSG--LV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358 (477)
Q Consensus 285 i~~i~~l~~---~~Gl~i~~r~ItvsTNG--i~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~ 358 (477)
.+.++.+++ +.|+. . .+|. +. +.++.|.+.+ ..+.+.+++.++...+.+....+....++.++.++
T Consensus 89 ~~~i~~i~~~~~~~g~~-----~--~~~~~~lt~e~i~~Lk~ag-~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~ 160 (336)
T PRK06245 89 LEYLYDLCELALEEGLL-----P--HTNAGILTREEMEKLKEVN-ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIE 160 (336)
T ss_pred HHHHHHHHHHHhhcCCC-----c--cccCCCCCHHHHHHHHHhC-CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHH
Confidence 555544432 23331 2 3443 33 4556555543 33456778888888765532222335678899998
Q ss_pred HHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC------CeEEEEeecCCCCCC---CCCCcHHHHHHHHHHH
Q 011810 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP------CKINLISFNPHCGSQ---FTPTTDEKMIEFRNIL 428 (477)
Q Consensus 359 ~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~------~~VnLipynp~~~~~---~~~ps~e~l~~f~~~L 428 (477)
. ..+.|.++. ..++=|++++.++..+...+++.+. ..+.+.+|.|.++.. ..+++.+++.++....
T Consensus 161 ~--a~~~Gi~~~--~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~ 235 (336)
T PRK06245 161 N--AGKLKIPFT--TGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALA 235 (336)
T ss_pred H--HHHcCCcee--eeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHH
Confidence 6 455666543 3345567888999988777776553 256777888887653 4566777766654444
No 86
>PRK12928 lipoyl synthase; Provisional
Probab=99.12 E-value=1.3e-08 Score=103.03 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=137.1
Q ss_pred cCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc----ccCCHHHHHHHHHHHHHhcCC
Q 011810 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE----PLHNVENVIKAANIMVHEQGL 297 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE----PLln~d~vi~~i~~l~~~~Gl 297 (477)
+.||+.+|.||..+. +....++++|+++.+..+.+ .+++.|+++| |. |-...+.+.++++.+.+...
T Consensus 67 s~gC~~~C~FCa~~~-g~~~~~~~eei~~~a~~~~~------~G~keivitg-~~~dDl~d~g~~~~~ell~~Ik~~~p- 137 (290)
T PRK12928 67 GSICTRRCAFCQVDK-GRPMPLDPDEPERVAEAVAA------LGLRYVVLTS-VARDDLPDGGAAHFVATIAAIRARNP- 137 (290)
T ss_pred cccccCcCCCCCccC-CCCCCCCHHHHHHHHHHHHH------CCCCEEEEEE-EeCCcccccCHHHHHHHHHHHHhcCC-
Confidence 799999999999776 44567899999988886543 3688899998 53 33344567777776654432
Q ss_pred CCCCCeEEEEcCCc----hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEE
Q 011810 298 HFSPRKVTVSTSGL----VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 373 (477)
Q Consensus 298 ~i~~r~ItvsTNGi----~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~iey 373 (477)
..+|.+.|-.. .+.++++.+.+...+..-+.+ .++.++++.+ .++.++.++.++. ..+.+..+.+..
T Consensus 138 ---~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt-~~~vl~~m~r---~~t~e~~le~l~~--ak~~gp~i~~~s 208 (290)
T PRK12928 138 ---GTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLET-VPRLQKAVRR---GADYQRSLDLLAR--AKELAPDIPTKS 208 (290)
T ss_pred ---CCEEEEeccccccCCHHHHHHHHHcCchhhcccCcC-cHHHHHHhCC---CCCHHHHHHHHHH--HHHhCCCceecc
Confidence 12466655433 356777777763222222343 4677776554 4788999999996 456665577777
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeec-CCCCC-C-CCCCcHHHHHHHHHHHHhCCCe
Q 011810 374 VMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFN-PHCGS-Q-FTPTTDEKMIEFRNILAGAGCT 434 (477)
Q Consensus 374 vLI~GvNDs~ed~~~La~ll~~l~~-~VnLipyn-p~~~~-~-~~~ps~e~l~~f~~~L~~~Gi~ 434 (477)
.+|=|+.+++++..+..++++++++ .+++.+|- |.... + .+-.++++.++++++..+.|+.
T Consensus 209 ~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~ 273 (290)
T PRK12928 209 GLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFS 273 (290)
T ss_pred cEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCc
Confidence 7777899999999999999999986 78888874 44321 1 1334578888999999999985
No 87
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.12 E-value=7.3e-11 Score=115.36 Aligned_cols=226 Identities=19% Similarity=0.271 Sum_probs=152.4
Q ss_pred eeEEEEecCccCCCCCCCCCCCCC----CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRMG----LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI 290 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~g----~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~ 290 (477)
..+-+|.+..||++|.||.-.+.. ..+.++.+|++...... .. .++..+-+.| |||+...| +.+...-
T Consensus 11 tyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F----~~--qgv~knrLtg-geptIr~d-i~~i~~g 82 (323)
T KOG2876|consen 11 TYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLF----AP--QGVDKNRLTG-GEPLIRQD-IVPIVAG 82 (323)
T ss_pred hhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhh----hH--hhhhhhhhcC-CCCccccc-ccchhhh
Confidence 556788899999999999965432 34567888887744332 22 3677788999 99999854 5555555
Q ss_pred HHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe
Q 011810 291 MVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368 (477)
Q Consensus 291 l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~ 368 (477)
+.+-.|+. .+.|.|||+. ..+-++-+.+...+.+|++....+...+++.. -.+.++++.+.. .......+
T Consensus 83 ~~~l~gLk----s~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr---~g~v~V~~~iq~-a~~lgy~p 154 (323)
T KOG2876|consen 83 LSSLPGLK----SIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRR---KGFVKVWASIQL-AIELGYNP 154 (323)
T ss_pred hhcccchh----hhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhh---ccHHHHHHHHhH-HhhhCCCC
Confidence 55666764 7899999984 34455555565567799999988888888753 347899999986 23333456
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCc----HHHHHHHHH------HH----------
Q 011810 369 VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTT----DEKMIEFRN------IL---------- 428 (477)
Q Consensus 369 V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps----~e~l~~f~~------~L---------- 428 (477)
+.++.++++|+|++ ++-+++.+-+..+..|..|.|.|..+..+...+ .+.+....+ .+
T Consensus 155 vkvn~v~~k~~n~~--ev~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~~~~d~~~~l~~e~s~T~Ka 232 (323)
T KOG2876|consen 155 VKVNCVVMKGLNED--EVFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIVKPWDFSVRLPDEPSDTAKA 232 (323)
T ss_pred cceeeEEEeccCCC--cccceeeecCCCCcceEEEEecccCCCcccccccccHHHHHHHHhccCchhhcCCCCCCccccc
Confidence 88999999999986 455666666666778888888888766543322 222222211 01
Q ss_pred -HhCCC--eEEecCCCCCcccccccccccCCCC
Q 011810 429 -AGAGC--TVFLRLSRGDDQMAACGQLGNPGAI 458 (477)
Q Consensus 429 -~~~Gi--~v~vR~s~G~di~aaCGQL~~~~~~ 458 (477)
..-|+ .|.+-.+.-.+.|++|..|+...++
T Consensus 233 ~~i~g~~gqvsfitsm~~hfC~tcnrlr~~aDg 265 (323)
T KOG2876|consen 233 YKIDGFQGQVSFITSMSEHFCGTCNRLRITADG 265 (323)
T ss_pred cccccccceEEeehhhHHHHHhhhhhheEeccC
Confidence 11122 2455666777888888888777655
No 88
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.10 E-value=1.6e-08 Score=109.74 Aligned_cols=184 Identities=16% Similarity=0.278 Sum_probs=124.4
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-----CcccCCHHHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----GEPLHNVENVIKA 287 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-----GEPLln~d~vi~~ 287 (477)
+....|.++.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.|. |--+.+...+.++
T Consensus 156 ~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~------~g~~ei~l~d~n~~~yG~d~~~~~~l~~L 229 (502)
T PRK14326 156 AYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVD------EGVLEVTLLGQNVNAYGVSFGDRGAFSKL 229 (502)
T ss_pred CceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHH------CCCceEEEEeecccccccCCCCHHHHHHH
Confidence 345678889999999999998753 34578899999999987643 25777777662 1112233455666
Q ss_pred HHHHHHhcCCCCCCCeEEEEcC---CchHHHHHHHhc-C--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011810 288 ANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNE-S--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361 (477)
Q Consensus 288 i~~l~~~~Gl~i~~r~ItvsTN---Gi~p~i~~L~~~-~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l 361 (477)
++.+..-.|+. ++.+++. .+.+++.+++.+ + -..|.+.+.+.+++..+. .++.++.+++.+.++. +
T Consensus 230 l~~l~~i~~l~----~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~---m~R~~t~~~~~~~v~~-l 301 (502)
T PRK14326 230 LRACGEIDGLE----RVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRA---MRRSYRSERFLGILEK-V 301 (502)
T ss_pred HHHHHhcCCcc----EEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHh---cCCCCCHHHHHHHHHH-H
Confidence 66544333442 4666542 233555555543 3 246779999999988765 4567889999999997 3
Q ss_pred HhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 362 HFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 362 ~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
++....+.+..-+|=|+ +++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 302 -r~~~~~i~i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~ 353 (502)
T PRK14326 302 -RAAMPDAAITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRPGTP 353 (502)
T ss_pred -HHhCCCCeEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCh
Confidence 44333344444444342 4889999999999998864 57788899988764
No 89
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.10 E-value=3e-08 Score=106.31 Aligned_cols=200 Identities=12% Similarity=0.199 Sum_probs=131.2
Q ss_pred cCCCCCCCCCCCCCC-CcCCC---HHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCC
Q 011810 225 CAMNCQFCYTGRMGL-KRHLT---AAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHF 299 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~-~r~Lt---~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~i 299 (477)
|+..|.||....... ..... .+.+++++....+.+.. ..++..|.|-| |+|++ +.+.+.++++.+.+..++.
T Consensus 60 C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~-~~~v~~i~fgG-GTPs~l~~~~l~~ll~~i~~~~~~~- 136 (453)
T PRK13347 60 CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQ-RRRVSQLHWGG-GTPTILNPDQFERLMAALRDAFDFA- 136 (453)
T ss_pred ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCC-CCeEEEEEEcC-cccccCCHHHHHHHHHHHHHhCCCC-
Confidence 999999998654321 11111 34455555543333321 24688898988 99994 7788888888776654432
Q ss_pred CCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEEEE
Q 011810 300 SPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM 375 (477)
Q Consensus 300 ~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~ieyvL 375 (477)
....+++.||.. . +.++.|.+.+-..|.|.+.+.+++.++.+ ++.++.+++.++++. .++.|.. |.+..++
T Consensus 137 ~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l---~R~~~~~~~~~ai~~--lr~~G~~~v~~dli~ 211 (453)
T PRK13347 137 PEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAI---NRIQPEEMVARAVEL--LRAAGFESINFDLIY 211 (453)
T ss_pred CCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHh---CCCCCHHHHHHHHHH--HHhcCCCcEEEeEEE
Confidence 123589999974 3 45566666665577899999999998765 345688999999996 4566654 4444333
Q ss_pred -eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCC--------CCCCCCcHHH-H---HHHHHHHHhCCCe
Q 011810 376 -LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCG--------SQFTPTTDEK-M---IEFRNILAGAGCT 434 (477)
Q Consensus 376 -I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~--------~~~~~ps~e~-l---~~f~~~L~~~Gi~ 434 (477)
+|| ++.+++.+..+++..+++ +|.+.+|...+. .....|+.++ . +...+.|.+.|+.
T Consensus 212 GlPg--qt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 212 GLPH--QTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred eCCC--CCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE
Confidence 466 678999999999998865 787777643221 1233444433 3 3445778888875
No 90
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.09 E-value=1.3e-08 Score=108.64 Aligned_cols=181 Identities=13% Similarity=0.282 Sum_probs=124.5
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCH-----HHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV-----ENVIKA 287 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~-----d~vi~~ 287 (477)
+....+.++.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|.| ...+.+. ..+.++
T Consensus 145 ~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~------~g~~eI~l~d-~~~~~y~~~~~~~~~~~L 217 (437)
T PRK14331 145 KYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVD------DGVKEIHLIG-QNVTAYGKDIGDVPFSEL 217 (437)
T ss_pred CcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHH------CCCeEEEEee-eccccccCCCCCCCHHHH
Confidence 345566778999999999997743 34477899999999987643 3688899988 6665431 135566
Q ss_pred HHHHHHhcCCCCCCCeEEEEcC---CchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011810 288 ANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361 (477)
Q Consensus 288 i~~l~~~~Gl~i~~r~ItvsTN---Gi~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l 361 (477)
++.+.+..|+ .++.+++. .+.+.+.+++... -..|.+.+.+.+++..+. .++.++.+++.++++. +
T Consensus 218 l~~l~~~~g~----~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~---m~R~~t~~~~~~~v~~-l 289 (437)
T PRK14331 218 LYAVAEIDGV----ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKL---MDRGYTKEEYLEKIEL-L 289 (437)
T ss_pred HHHHhcCCCc----cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHH---cCCCCCHHHHHHHHHH-H
Confidence 6655443444 24666553 2335555554432 346678999999988764 3567889999999997 3
Q ss_pred HhhcCCeEEEEEEEe---CCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 362 HFKNNYKVLFEYVML---AGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 362 ~~~~~~~V~ieyvLI---~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
++....+.+..-+| || ++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 290 -r~~~~gi~i~~d~IvG~Pg--ET~ed~~~tl~~l~~l~~~~i~~f~~sp~pGT~ 341 (437)
T PRK14331 290 -KEYIPDITFSTDIIVGFPT--ETEEDFEETLDVLKKVEFEQVFSFKYSPRPGTP 341 (437)
T ss_pred -HHhCCCCEEecCEEEECCC--CCHHHHHHHHHHHHhcCcceeeeeEecCCCCcc
Confidence 44422334443333 55 789999999999999874 67888999988764
No 91
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.09 E-value=1.1e-08 Score=104.17 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=115.0
Q ss_pred EEecCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC-cccCCHHHHHHHHHHHHHh
Q 011810 219 VSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHNVENVIKAANIMVHE 294 (477)
Q Consensus 219 VSsq~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG-EPLln~d~vi~~i~~l~~~ 294 (477)
|.++.||+.+|.||...... ..+.++.+||++.+..+.+ .+++.|.|.| | .|..+.+.+.++++.+.+.
T Consensus 9 i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~------~G~~~i~l~g-g~~~~~~~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 9 INFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVA------KGATEVCIQG-GLNPQLDIEYYEELFRAIKQE 81 (309)
T ss_pred ecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCCCCHHHHHHHHHHHHHH
Confidence 44589999999999865422 1346899999999987643 3678899998 6 5777888889999977655
Q ss_pred c-CCCCCCCeEE-E---------EcCCch--HHHHHHHhcCCeEE-EEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 295 Q-GLHFSPRKVT-V---------STSGLV--PQLKQFLNESNCAL-AVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 295 ~-Gl~i~~r~It-v---------sTNGi~--p~i~~L~~~~d~~L-aISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
. .+. +. + .+.|+. +.+++|.+.+-..+ .++....+++.++++.|. +.+.++.++.++.
T Consensus 82 ~~~i~-----~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~--~~t~~~~l~~i~~- 153 (309)
T TIGR00423 82 FPDVH-----IHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN--KLSSDEWLEVIKT- 153 (309)
T ss_pred CCCce-----EEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC--CCCHHHHHHHHHH-
Confidence 3 232 22 1 145654 35677777663222 256777888999888763 4467888899986
Q ss_pred HHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011810 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 398 (477)
+.+.|.++. ..+|=|..++.++..++..++++++.
T Consensus 154 -a~~~Gi~~~--s~~iiG~~Et~ed~~~~l~~lr~l~~ 188 (309)
T TIGR00423 154 -AHRLGIPTT--ATMMFGHVENPEHRVEHLLRIRKIQE 188 (309)
T ss_pred -HHHcCCCce--eeEEecCCCCHHHHHHHHHHHHhhch
Confidence 567777665 34455666889999999999998753
No 92
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.08 E-value=5.9e-08 Score=101.41 Aligned_cols=199 Identities=11% Similarity=0.158 Sum_probs=133.0
Q ss_pred ccCCCCCCCCCCCCCCC---cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc-CCHHHHHHHHHHHHHhcCCCC
Q 011810 224 GCAMNCQFCYTGRMGLK---RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHEQGLHF 299 (477)
Q Consensus 224 GCnl~C~FC~tg~~g~~---r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL-ln~d~vi~~i~~l~~~~Gl~i 299 (477)
-|+.+|.||.-...... ..-.++.+++++..... .. ..+++.|.|.| |+|+ ++.+.+.++++.+.+..++.
T Consensus 10 fC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~-~~--~~~i~~i~~gG-Gtpt~l~~~~l~~ll~~i~~~~~~~- 84 (377)
T PRK08599 10 FCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAI-RP--FDKLKTIYIGG-GTPTALSAEQLERLLTAIHRNLPLS- 84 (377)
T ss_pred CcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhh-cC--CCceeEEEeCC-CCcccCCHHHHHHHHHHHHHhCCCC-
Confidence 39999999985532111 11235566677643222 11 24688887777 9999 47788888888776654442
Q ss_pred CCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEEEE
Q 011810 300 SPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM 375 (477)
Q Consensus 300 ~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~ieyvL 375 (477)
....+++.+|.- . +.++.+.+.+-..|.+.+.+.+++..+.+ ++.++.+++.++++. .++.|.+ +.+. +
T Consensus 85 ~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l---~r~~~~~~~~~~i~~--l~~~g~~~v~~d--l 157 (377)
T PRK08599 85 GLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKI---GRTHNEEDVYEAIAN--AKKAGFDNISID--L 157 (377)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCcEEEe--e
Confidence 123689999963 3 45666666665678899999999998865 356788999999996 4566654 4443 3
Q ss_pred eCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC---------CCCCcHHH----HHHHHHHHHhCCCe
Q 011810 376 LAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---------FTPTTDEK----MIEFRNILAGAGCT 434 (477)
Q Consensus 376 I~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~---------~~~ps~e~----l~~f~~~L~~~Gi~ 434 (477)
|=|+ +++.+++++..+++..++. +|.+.++.+.+++. +..|+.+. .+...+.|.+.|+.
T Consensus 158 i~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~ 231 (377)
T PRK08599 158 IYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH 231 (377)
T ss_pred ecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3332 4788999999999998864 67777776666542 23344433 34456778888875
No 93
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.08 E-value=1.5e-08 Score=107.99 Aligned_cols=184 Identities=16% Similarity=0.333 Sum_probs=121.7
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec-----CCcccCCHHHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-----MGEPLHNVENVIKA 287 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G-----mGEPLln~d~vi~~ 287 (477)
+....+..|.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.| .|-.+.+.+.+.++
T Consensus 139 ~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~------~g~kei~l~~~n~~~yg~~~~~~~~l~~L 212 (434)
T PRK14330 139 KHHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAK------QGYREVTFLGQNVDAYGKDLKDGSSLAKL 212 (434)
T ss_pred CcEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHH------CCCcEEEEEEecccccccCCCCCccHHHH
Confidence 445567778999999999997643 33477899999999986543 3677788865 22223232345566
Q ss_pred HHHHHHhcCCCCCCCeEEEEc---CCchHHHHHHHhc-CC--eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHH
Q 011810 288 ANIMVHEQGLHFSPRKVTVST---SGLVPQLKQFLNE-SN--CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREEL 361 (477)
Q Consensus 288 i~~l~~~~Gl~i~~r~ItvsT---NGi~p~i~~L~~~-~d--~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l 361 (477)
++.+.+..|+. ++.+.+ ..+.+.+.+++.. +. ..|.+.+.+.+++..+. .++.++.+++.+.++. +
T Consensus 213 l~~~~~~~~~~----~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~---M~R~~~~~~~~~~i~~-l 284 (434)
T PRK14330 213 LEEASKIEGIE----RIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKL---MNRRYTREEYLELIEK-I 284 (434)
T ss_pred HHHHHhcCCce----EEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHh---cCCCCCHHHHHHHHHH-H
Confidence 66444434543 233322 2334555555544 32 35779999999987653 4567889999999987 3
Q ss_pred HhhcCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 362 HFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 362 ~~~~~~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
++....+.+..-+|-| =+++++++++..+|++.++. ++++.+|.|.+++.
T Consensus 285 -r~~~~~i~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~~~sp~pGT~ 336 (434)
T PRK14330 285 -RSKVPDASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTV 336 (434)
T ss_pred -HHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCCCCh
Confidence 3432334444434423 24889999999999999874 78999999998864
No 94
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.7e-10 Score=110.28 Aligned_cols=85 Identities=27% Similarity=0.490 Sum_probs=62.9
Q ss_pred CceeEEEEecCccCCCCCCCCCCCCC------CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGRMG------LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~~g------~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~ 286 (477)
||-++.|+ +.|||++|.||.|.... ..+.++.+||++++.... ....+|+|+| |||+++ +++.+
T Consensus 21 Gr~~vFVR-~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-------~~~~~V~lTG-GEP~~~-~~l~~ 90 (212)
T COG0602 21 GRPSVFVR-FAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-------YKARGVSLTG-GEPLLQ-PNLLE 90 (212)
T ss_pred cceeEEEE-cCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-------CCcceEEEeC-CcCCCc-ccHHH
Confidence 55666666 58999999999986432 235688999999887531 2344899999 999776 45677
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCchH
Q 011810 287 AANIMVHEQGLHFSPRKVTVSTSGLVP 313 (477)
Q Consensus 287 ~i~~l~~~~Gl~i~~r~ItvsTNGi~p 313 (477)
+++.+ +..|+. +.+.|||..+
T Consensus 91 Ll~~l-~~~g~~-----~~lETngti~ 111 (212)
T COG0602 91 LLELL-KRLGFR-----IALETNGTIP 111 (212)
T ss_pred HHHHH-HhCCce-----EEecCCCCcc
Confidence 77754 445885 9999999863
No 95
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.08 E-value=3.4e-08 Score=105.90 Aligned_cols=202 Identities=11% Similarity=0.212 Sum_probs=133.6
Q ss_pred CccCCCCCCCCCCCCC-CCcCC---CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011810 223 VGCAMNCQFCYTGRMG-LKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 297 (477)
Q Consensus 223 ~GCnl~C~FC~tg~~g-~~r~L---t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl 297 (477)
.-|+.+|.||...... ..... ..+.+++++....+.+. ...++..|.|.| |+|++ +.+.+.++++.+.+...+
T Consensus 57 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~-~~~~v~~I~fgG-GtP~~l~~~~l~~ll~~i~~~~~~ 134 (455)
T TIGR00538 57 PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFD-GNRHVSQLHWGG-GTPTYLSPEQISRLMKLIRENFPF 134 (455)
T ss_pred CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcC-CCCceEEEEECC-CCcCCCCHHHHHHHHHHHHHhCCC
Confidence 3499999999976432 11111 35566666665443332 124788999988 99985 788888888877654332
Q ss_pred CCCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEE
Q 011810 298 HFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEY 373 (477)
Q Consensus 298 ~i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~iey 373 (477)
. ....++++||+. . +.++.|.+.+-..|.|++.+.+++..+.+. +.++.++++++++. .++.|.. +.+..
T Consensus 135 ~-~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~---r~~~~~~~~~ai~~--l~~~G~~~v~~dl 208 (455)
T TIGR00538 135 N-ADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVN---RIQPEEMIFELMNH--AREAGFTSINIDL 208 (455)
T ss_pred C-CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhC---CCCCHHHHHHHHHH--HHhcCCCcEEEeE
Confidence 1 123599999984 2 456666666666778999999999988664 44678999999996 4566654 44443
Q ss_pred EE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCC--------CCCCCCcHHHHH----HHHHHHHhCCCe
Q 011810 374 VM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCG--------SQFTPTTDEKMI----EFRNILAGAGCT 434 (477)
Q Consensus 374 vL-I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~--------~~~~~ps~e~l~----~f~~~L~~~Gi~ 434 (477)
++ +|| ++.+++.+..+++..+++ +|.+.++...+. .....|+.++.. ...+.|.+.|+.
T Consensus 209 i~GlPg--qt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 209 IYGLPK--QTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred EeeCCC--CCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 32 365 678999999999998874 787777643221 123345544433 344667778875
No 96
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.07 E-value=2.7e-08 Score=101.29 Aligned_cols=196 Identities=11% Similarity=0.144 Sum_probs=134.9
Q ss_pred ecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccC---CHHHHHHHHHHHHHhc-
Q 011810 221 SQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLH---NVENVIKAANIMVHEQ- 295 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLl---n~d~vi~~i~~l~~~~- 295 (477)
.+.||+.+|.||...........+++|+.+.+..+.+ .+++.|+++| |+ +-+ ..+.+.+.++.+.+..
T Consensus 69 i~~gC~~~C~FC~v~~~rg~~~~~~eei~~~a~~~~~------~GlkevvLTs-v~~ddl~d~g~~~l~~li~~I~~~~p 141 (302)
T TIGR00510 69 LGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKD------MGLKYVVITS-VDRDDLEDGGASHLAECIEAIREKLP 141 (302)
T ss_pred cCcCcCCCCCcCCccCCCCCCCCCHHHHHHHHHHHHH------CCCCEEEEEe-ecCCCcccccHHHHHHHHHHHHhcCC
Confidence 4799999999999764322223578898888876653 4789999998 44 322 2346778888765532
Q ss_pred CCCCCCCeEEEEcC---CchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE
Q 011810 296 GLHFSPRKVTVSTS---GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372 (477)
Q Consensus 296 Gl~i~~r~ItvsTN---Gi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie 372 (477)
++ +|.+.|. |..+.++.+.+.+...+..-+.+. +..+.++.+ .+++++.++.++. ..+....+.+.
T Consensus 142 ~i-----~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr---~~t~e~~Le~l~~--ak~~~pgi~~~ 210 (302)
T TIGR00510 142 NI-----KIETLVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRP---GATYRWSLKLLER--AKEYLPNLPTK 210 (302)
T ss_pred CC-----EEEEeCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCC---CCCHHHHHHHHHH--HHHhCCCCeec
Confidence 33 3777664 434567777777643334445555 556665553 5778999999986 34443456677
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEee-cCCCC-CC-CCCCcHHHHHHHHHHHHhCCCe
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISF-NPHCG-SQ-FTPTTDEKMIEFRNILAGAGCT 434 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipy-np~~~-~~-~~~ps~e~l~~f~~~L~~~Gi~ 434 (477)
.-+|=|+.++++++.+..++++++++ .+.+.+| .|... .+ .+-.++++.+.++++..+.|+.
T Consensus 211 TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~ 276 (302)
T TIGR00510 211 SGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFL 276 (302)
T ss_pred ceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCCh
Confidence 77888899999999999999999986 6777775 45332 22 2345678888999999999985
No 97
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.07 E-value=1.6e-08 Score=107.87 Aligned_cols=183 Identities=15% Similarity=0.249 Sum_probs=123.4
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC------HHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN------VENVIK 286 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln------~d~vi~ 286 (477)
+....|.++.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|.| ..-+.+ ...+.+
T Consensus 146 ~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~------~G~~ei~l~~-~~~~~yg~d~~~~~~l~~ 218 (439)
T PRK14328 146 KVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVS------EGYKEVTLLG-QNVNSYGKDLEEKIDFAD 218 (439)
T ss_pred CcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH------CCCcEEEEec-cccCcCCcCCCCCcCHHH
Confidence 445677889999999999998753 34578899999999986543 3677888887 443221 013455
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcC---CchHHHHHHHh-cC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 287 AANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLN-ES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 287 ~i~~l~~~~Gl~i~~r~ItvsTN---Gi~p~i~~L~~-~~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
+++.+.+-.|+. ++.+.+. .+.+++.+++. .+ -..+.+.+.+.+++..+. .+++++.+++++.++.
T Consensus 219 Ll~~l~~~~~~~----~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~---M~R~~~~~~~~~~i~~- 290 (439)
T PRK14328 219 LLRRVNEIDGLE----RIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKK---MNRHYTREYYLELVEK- 290 (439)
T ss_pred HHHHHHhcCCCc----EEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHh---CCCCCCHHHHHHHHHH-
Confidence 565544333432 4555442 23455544443 32 236779999999988764 4567889999999986
Q ss_pred HHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 361 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ ++....+.+.+-+|-|+ +++++++++..++++.++. .+++.+|.|.+++.
T Consensus 291 l-r~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~pGT~ 343 (439)
T PRK14328 291 I-KSNIPDVAITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRKGTP 343 (439)
T ss_pred H-HHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCCCCh
Confidence 3 44433444444444442 4889999999999998864 68888999988764
No 98
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.06 E-value=2.2e-08 Score=107.14 Aligned_cols=184 Identities=13% Similarity=0.226 Sum_probs=124.7
Q ss_pred CceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCH-----HHHHH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV-----ENVIK 286 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~-----d~vi~ 286 (477)
++....|.++.|||.+|.||..+.. |..|..++++|++++....+ .+++.|+|.| ....... ..+.+
T Consensus 147 ~~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~------~G~~ei~l~~-~~~~~y~d~~~~~~l~~ 219 (445)
T PRK14340 147 GSISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAE------AGYREITLLG-QNVNSYSDPEAGADFAG 219 (445)
T ss_pred CCcEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHH------CCCeEEEEee-cccchhhccCCCchHHH
Confidence 3456678889999999999998743 34578899999999987543 3688898987 4433211 13555
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcC---CchHHHHHHHhc---CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 287 AANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNE---SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 287 ~i~~l~~~~Gl~i~~r~ItvsTN---Gi~p~i~~L~~~---~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
+++.+.+..+ ..++.+++. .+.+.+.+++.. +-..|.+.+.+.+++.-+. .++.++.+++.++++.
T Consensus 220 Ll~~l~~~~~----~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~---m~R~~t~~~~~~~v~~- 291 (445)
T PRK14340 220 LLDAVSRAAP----EMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRR---MNRGHTIEEYLEKIAL- 291 (445)
T ss_pred HHHHHhhcCC----CcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHh---cCCCCCHHHHHHHHHH-
Confidence 6665533211 124666543 334555555443 2346779999999987664 4677899999999997
Q ss_pred HHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 361 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ ++.-..+.+..-+|-|+ +++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 292 l-r~~~pgi~i~td~IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~pGT~ 344 (445)
T PRK14340 292 I-RSAIPGVTLSTDLIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRPGTL 344 (445)
T ss_pred H-HHhCCCCEEeccEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCCCCh
Confidence 3 44422344444343231 3889999999999999874 78888999998864
No 99
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.06 E-value=2.9e-08 Score=106.19 Aligned_cols=183 Identities=13% Similarity=0.285 Sum_probs=125.9
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-------CHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-------NVENVI 285 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-------n~d~vi 285 (477)
+...+|..+.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.| ..-.. +...+.
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~------~G~~eI~l~~-~~~~~yg~d~~~~~~~l~ 219 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVD------RGAREITLLG-QNVNSYGQDKHGDGTSFA 219 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHH------CCCeEEEEEe-cCccccccCCCCCCccHH
Confidence 456788889999999999998753 44578899999999987643 3678899987 22110 012355
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEc---CCchHHHHHHHhc-C--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHH
Q 011810 286 KAANIMVHEQGLHFSPRKVTVST---SGLVPQLKQFLNE-S--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359 (477)
Q Consensus 286 ~~i~~l~~~~Gl~i~~r~ItvsT---NGi~p~i~~L~~~-~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~ 359 (477)
++++.+.+..|+. ++.+++ +.+.+++.+++.. . -..|.+.+.+.+++..+. .+++|+.+++.+.++.
T Consensus 220 ~Ll~~l~~~~g~~----~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~---M~R~~t~e~~~~~v~~ 292 (446)
T PRK14337 220 QLLHKVAALPGLE----RLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKA---MGRKYDMARYLDIVTD 292 (446)
T ss_pred HHHHHHHhcCCCc----EEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHh---CCCCCCHHHHHHHHHH
Confidence 5666554434542 455543 2334555555443 2 246789999999988764 4567889999999997
Q ss_pred HHHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 360 ELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 360 ~l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ .+....+.+..-+|-|+ +++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 293 -l-r~~~~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f~ysp~pgT~ 345 (446)
T PRK14337 293 -L-RAARPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSFCYSDRPGTR 345 (446)
T ss_pred -H-HHhCCCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEEecCCCCCCc
Confidence 3 34433455555555443 4889999999999999874 78888999988763
No 100
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.06 E-value=5.8e-08 Score=101.49 Aligned_cols=202 Identities=15% Similarity=0.224 Sum_probs=131.5
Q ss_pred ccCCCCCCCCCCCCCCCc---CCCHHHHHH----HHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhc
Q 011810 224 GCAMNCQFCYTGRMGLKR---HLTAAEIVE----QAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQ 295 (477)
Q Consensus 224 GCnl~C~FC~tg~~g~~r---~Lt~eEIv~----qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~ 295 (477)
=|+..|.||........+ .-..++.++ ++....+.+......+..|.|-| |.|++ +.+.+.++++.+.+..
T Consensus 11 FC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GG-GTPs~l~~~~l~~ll~~i~~~~ 89 (375)
T PRK05628 11 FCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGG-GTPSLLGAEGLARVLDAVRDTF 89 (375)
T ss_pred CcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCC-CccccCCHHHHHHHHHHHHHhC
Confidence 399999999864321111 123333444 44433332210123577777766 99985 6777888888766655
Q ss_pred CCCCCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEE
Q 011810 296 GLHFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLF 371 (477)
Q Consensus 296 Gl~i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~i 371 (477)
++. ....+++.+|.- . +.++.+.+.+-..|.+.+.+.+++..+.+ ++.++.++++++++. +++.+.. +.+
T Consensus 90 ~~~-~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~s~~~~~~a~~~--l~~~g~~~v~~ 163 (375)
T PRK05628 90 GLA-PGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVL---DRTHTPGRAVAAARE--ARAAGFEHVNL 163 (375)
T ss_pred CCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCcEEE
Confidence 553 223688888863 2 45666666665677899999999987754 456789999999996 4666665 655
Q ss_pred EEEE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC---------CCCCcHHH----HHHHHHHHHhCCCe
Q 011810 372 EYVM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---------FTPTTDEK----MIEFRNILAGAGCT 434 (477)
Q Consensus 372 eyvL-I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~---------~~~ps~e~----l~~f~~~L~~~Gi~ 434 (477)
..++ +|| ++.+++.+..+++..++. +|.+.++.+.+++. +..|+.+. .....+.|++.|+.
T Consensus 164 dli~GlPg--qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 164 DLIYGTPG--ESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD 239 (375)
T ss_pred EEeccCCC--CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 5444 466 678899999999998874 78888877665542 34455433 33445677788875
No 101
>PRK06267 hypothetical protein; Provisional
Probab=99.06 E-value=3.3e-08 Score=102.65 Aligned_cols=186 Identities=18% Similarity=0.263 Sum_probs=128.1
Q ss_pred cCccC--CCCCCCCCCCCC------CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHH
Q 011810 222 QVGCA--MNCQFCYTGRMG------LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293 (477)
Q Consensus 222 q~GCn--l~C~FC~tg~~g------~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~ 293 (477)
..+|+ .+|.||...... ....++++||++++..+.+ .+++.+.++| |+++ ..+.+.++++.+.+
T Consensus 34 S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~------~Gv~~~~lsg-G~~~-~~~el~~i~e~I~~ 105 (350)
T PRK06267 34 GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKR------IGWKLEFISG-GYGY-TTEEINDIAEMIAY 105 (350)
T ss_pred cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHH------cCCCEEEEec-CCCC-CHHHHHHHHHHHHH
Confidence 58999 789999865421 1245799999999976644 2466677888 9995 45667777776654
Q ss_pred hcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEE
Q 011810 294 EQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 373 (477)
Q Consensus 294 ~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~iey 373 (477)
..+. .+.++.......-........ +...+++.+++.+.++.|. .++++.++.++. ..+.|.++...+
T Consensus 106 ~~~~-----~~~~s~G~~d~~~~~~~~l~G--v~g~~ET~~~~~~~~i~~~---~s~ed~~~~l~~--ak~aGi~v~~g~ 173 (350)
T PRK06267 106 IQGC-----KQYLNVGIIDFLNINLNEIEG--VVGAVETVNPKLHREICPG---KPLDKIKEMLLK--AKDLGLKTGITI 173 (350)
T ss_pred hhCC-----ceEeecccCCHHHHhhccccC--ceeeeecCCHHHHHhhCCC---CCHHHHHHHHHH--HHHcCCeeeeeE
Confidence 4443 255554333222111111112 2468899999999888873 478999999996 567888776544
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC---CCCCcHHHHHHHHHHHH
Q 011810 374 VMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---FTPTTDEKMIEFRNILA 429 (477)
Q Consensus 374 vLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~---~~~ps~e~l~~f~~~L~ 429 (477)
++ |.+++.+|+.+++++++.++. .+.+.++.|.++++ .++++.+++.++...++
T Consensus 174 Ii--GlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~R 231 (350)
T PRK06267 174 IL--GLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVR 231 (350)
T ss_pred EE--eCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHH
Confidence 33 456789999999999999875 57888899988764 45677777777665554
No 102
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.06 E-value=1.7e-08 Score=104.09 Aligned_cols=194 Identities=15% Similarity=0.193 Sum_probs=124.0
Q ss_pred cCccCCCCCCCCCCCCC-C--CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhc-CC
Q 011810 222 QVGCAMNCQFCYTGRMG-L--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ-GL 297 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g-~--~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~-Gl 297 (477)
+.+|+.+|.||...+.. . ...++++||++.+..+.+ .+++.|.|+|..+|.+..+.+.++++.+.+.. ++
T Consensus 48 s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~------~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i 121 (340)
T TIGR03699 48 TNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVA------YGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHI 121 (340)
T ss_pred chhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHH------cCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 68999999999744322 1 235899999999887643 36888999983488788888888888765442 23
Q ss_pred CCCC---Ce--EEEEcCCch--HHHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeE
Q 011810 298 HFSP---RK--VTVSTSGLV--PQLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369 (477)
Q Consensus 298 ~i~~---r~--ItvsTNGi~--p~i~~L~~~~d~~La-ISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V 369 (477)
++.. .. ....|||+. +.+++|.+.+-..+. ......+++.++.+.|. +.+.++.++.++. ..+.|.++
T Consensus 122 ~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~--~~s~~~~l~~i~~--a~~~Gi~v 197 (340)
T TIGR03699 122 HIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK--KISSEEWLEVMET--AHKLGLPT 197 (340)
T ss_pred CCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC--CCCHHHHHHHHHH--HHHcCCCc
Confidence 2110 00 012367875 456667666622221 12344678888887763 4568889999996 56778776
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC----eEEEEeec--CCCCCC---CCCCcHHHHHHHHHHH
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIPC----KINLISFN--PHCGSQ---FTPTTDEKMIEFRNIL 428 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll~~l~~----~VnLipyn--p~~~~~---~~~ps~e~l~~f~~~L 428 (477)
.... |=|...+.++..++..+++.++. ...++|+| | .+++ .++++.++..+.....
T Consensus 198 ~~~~--iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p-~~tpl~~~~~~~~~e~l~~iA~~ 262 (340)
T TIGR03699 198 TATM--MFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQP-GNTELGKKRPATSTEYLKVLAIS 262 (340)
T ss_pred ccee--EeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccC-CCCcccCCCCCCHHHHHHHHHHH
Confidence 6443 44566888999999999998753 23456643 4 3332 3455665555444333
No 103
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.05 E-value=2.2e-08 Score=106.78 Aligned_cols=184 Identities=13% Similarity=0.265 Sum_probs=125.7
Q ss_pred CceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC--------HHH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN--------VEN 283 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln--------~d~ 283 (477)
++....|.++.||+.+|.||..+.. |..+..++++|++++....+ .++..|+|.| .....+ ...
T Consensus 143 ~~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~------~g~~ei~l~~-~~~~~y~g~d~~~~~~~ 215 (438)
T TIGR01574 143 GIYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAE------KGVREITLLG-QNVNAYRGKDFEGKTMD 215 (438)
T ss_pred CceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHH------cCCeEEEEEe-cccCCccCCCCCCCccc
Confidence 4566778889999999999997643 34577899999999987543 3678888887 332222 113
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEcC---CchHHHHHHH-hcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHH
Q 011810 284 VIKAANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFL-NES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETL 357 (477)
Q Consensus 284 vi~~i~~l~~~~Gl~i~~r~ItvsTN---Gi~p~i~~L~-~~~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l 357 (477)
+.++++.+.+..|+. ++.+++. .+.+.+.+++ +.+ -..+.+.+.+.+++..+. .++.++.+++++.+
T Consensus 216 l~~Ll~~l~~~~~~~----~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~---m~R~~t~~~~~~~v 288 (438)
T TIGR01574 216 FSDLLRELSTIDGIE----RIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKL---MKRGYTREWYLNLV 288 (438)
T ss_pred HHHHHHHHHhcCCce----EEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHh---cCCCCCHHHHHHHH
Confidence 566666665444542 4555432 2334444444 433 346678999999988764 35678899999999
Q ss_pred HHHHHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 358 REELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 358 ~~~l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+. + ++....+.+..-+|-|+ .++++++++..+++++++. .+++.+|.|.+++.
T Consensus 289 ~~-i-r~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~ 343 (438)
T TIGR01574 289 RK-L-RAACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTP 343 (438)
T ss_pred HH-H-HHhCCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCCCCc
Confidence 87 3 44433455554455443 4789999999999999874 78888999988764
No 104
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.05 E-value=2.4e-08 Score=106.65 Aligned_cols=183 Identities=13% Similarity=0.249 Sum_probs=121.8
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC--------HHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN--------VENV 284 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln--------~d~v 284 (477)
+....+.++.|||++|.||..+.. |..+..++++|++++....+ .++..|+|.| -.-..+ ...+
T Consensus 146 ~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~------~g~~ei~l~d-~~~~~y~~~~~~~~~~~l 218 (444)
T PRK14325 146 GPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAE------QGVREITLLG-QNVNAYRGEGPDGEIADF 218 (444)
T ss_pred CceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHH------CCCcEEEEEe-eccccccCCCCCCCcchH
Confidence 455667778999999999998753 33456899999999987543 2577787775 221111 1245
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcC---CchHHHHHHHhc-C--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011810 285 IKAANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNE-S--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358 (477)
Q Consensus 285 i~~i~~l~~~~Gl~i~~r~ItvsTN---Gi~p~i~~L~~~-~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~ 358 (477)
.++++.+.+..|+. ++.+++. .+.+.+.+++.+ + -..|.+.+.+.+++..+. .++.++.+++.++++
T Consensus 219 ~~Ll~~l~~~~~~~----~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~---m~R~~~~~~~~~~i~ 291 (444)
T PRK14325 219 AELLRLVAAIDGIE----RIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKA---MNRGHTALEYKSIIR 291 (444)
T ss_pred HHHHHHHHhcCCcc----EEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHh---CCCCCCHHHHHHHHH
Confidence 66666554434442 4666542 234555444433 2 236678999999988654 356788999999999
Q ss_pred HHHHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 359 EELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 359 ~~l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
. + ++.+..+.+..-+|-|+ +++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 292 ~-l-r~~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~pGT~ 345 (444)
T PRK14325 292 K-L-RAARPDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRPGTP 345 (444)
T ss_pred H-H-HHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCCCCc
Confidence 7 3 44433344444444332 4889999999999998864 67778898888764
No 105
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.05 E-value=3.1e-08 Score=105.26 Aligned_cols=184 Identities=13% Similarity=0.237 Sum_probs=122.7
Q ss_pred CceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC---------HH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN---------VE 282 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln---------~d 282 (477)
++....|.++.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.| ..-..+ ..
T Consensus 125 ~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~------~G~keI~l~~-~~~~~yg~d~~~~~~~~ 197 (420)
T PRK14339 125 SPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVN------NGAKEIFLLG-QNVNNYGKRFSSEHEKV 197 (420)
T ss_pred CCeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHH------CCCcEEEEee-eccccccCCCcCCcccc
Confidence 3455677779999999999998753 33456799999999987543 3677888887 332111 01
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEc-C--CchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHH
Q 011810 283 NVIKAANIMVHEQGLHFSPRKVTVST-S--GLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356 (477)
Q Consensus 283 ~vi~~i~~l~~~~Gl~i~~r~ItvsT-N--Gi~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~ 356 (477)
.+.++++.+.+-.|+. ++.+++ + .+.+.+.+++... -..|.+.+.+.+++..+. .++.++.+++++.
T Consensus 198 ~l~~Ll~~l~~~~g~~----~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~---M~R~~t~~~~~~~ 270 (420)
T PRK14339 198 DFSDLLDKLSEIEGLE----RIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKA---MKRGYTKEWFLNR 270 (420)
T ss_pred cHHHHHHHHhcCCCcc----EEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHh---ccCCCCHHHHHHH
Confidence 3556666554334542 466543 2 2335555554432 246779999999988654 4677889999999
Q ss_pred HHHHHHhhcCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 357 LREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 357 l~~~l~~~~~~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
++. + .+....+.+..-+|-| =+++++++++..+|++.++. ++++.+|.|.++++
T Consensus 271 v~~-l-r~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~pGT~ 326 (420)
T PRK14339 271 AEK-L-RALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRPLTE 326 (420)
T ss_pred HHH-H-HHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCCCCc
Confidence 987 3 3432334444444433 24889999999999998875 58888999998875
No 106
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.03 E-value=1.3e-07 Score=102.31 Aligned_cols=204 Identities=13% Similarity=0.219 Sum_probs=132.5
Q ss_pred CccCCCCCCCCCCCCCC--CcCC---CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhc-
Q 011810 223 VGCAMNCQFCYTGRMGL--KRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQ- 295 (477)
Q Consensus 223 ~GCnl~C~FC~tg~~g~--~r~L---t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~- 295 (477)
.-|+.+|.||....... .+.. ..+.+++++....+.+...+.++..|.|.| |+|++ +.+.+.++++.+.+..
T Consensus 171 PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGG-GTPt~L~~~~L~~Ll~~i~~~f~ 249 (488)
T PRK08207 171 PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGG-GTPTSLTAEELERLLEEIYENFP 249 (488)
T ss_pred CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeC-CCccCCCHHHHHHHHHHHHHhcc
Confidence 56999999999654311 1111 234445555544333322224688898888 99985 6677778777665443
Q ss_pred CCCCCCCeEEEEc-C--Cch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCC-eEE
Q 011810 296 GLHFSPRKVTVST-S--GLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY-KVL 370 (477)
Q Consensus 296 Gl~i~~r~ItvsT-N--Gi~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~-~V~ 370 (477)
++. ..+.+++.. + .+. +.++.|.+.+-..|.|.+.+.+++..+.+ ++.++.++++++++. +++.|. .|.
T Consensus 250 ~~~-~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i---gR~ht~e~v~~ai~~--ar~~Gf~~In 323 (488)
T PRK08207 250 DVK-NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAI---GRHHTVEDIIEKFHL--AREMGFDNIN 323 (488)
T ss_pred ccC-CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHh---CCCCCHHHHHHHHHH--HHhCCCCeEE
Confidence 322 123466654 2 233 45666666665578899999999998865 456789999999996 566665 344
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC-------CCCCcHHHH----HHHHHHHHhCCCeE
Q 011810 371 FEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ-------FTPTTDEKM----IEFRNILAGAGCTV 435 (477)
Q Consensus 371 ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~-------~~~ps~e~l----~~f~~~L~~~Gi~v 435 (477)
+ -+|-|+ +++.+++.+..+++..+++ ++.+.++.+.+++. +..|+.++. +...+.|++.|+.-
T Consensus 324 ~--DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~~Gy~~ 399 (488)
T PRK08207 324 M--DLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKELGYVP 399 (488)
T ss_pred E--EEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHHcCCHh
Confidence 3 344443 4789999999999998865 78888877766542 345565443 44456677888754
No 107
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.03 E-value=2.2e-08 Score=106.33 Aligned_cols=183 Identities=16% Similarity=0.251 Sum_probs=120.5
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC----HHHHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN----VENVIKAA 288 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln----~d~vi~~i 288 (477)
+....|.++.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|+| .+-... ...+.+++
T Consensus 132 ~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~------~G~~ei~l~g-~d~~~yg~d~~~~l~~Ll 204 (420)
T TIGR01578 132 PLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVA------EGCKEIWITS-QDTGAYGRDIGSRLPELL 204 (420)
T ss_pred CcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHH------CCCeEEEEEe-eccccccCCCCcCHHHHH
Confidence 345667779999999999998753 34577899999999987543 3688899987 321110 01244555
Q ss_pred HHHHHhcCCCCCCCeEEEEcC------CchHHHHHHHhcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 289 NIMVHEQGLHFSPRKVTVSTS------GLVPQLKQFLNES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 289 ~~l~~~~Gl~i~~r~ItvsTN------Gi~p~i~~L~~~~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
+.+.+-.+. .++.+++. .+.+.+.+++... -..|.+.+.+.+++..+. .++.++.+++.+.++.
T Consensus 205 ~~l~~i~~~----~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~---m~R~~~~~~~~~~i~~- 276 (420)
T TIGR01578 205 RLITEIPGE----FRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKE---MKREYTVSDFEDIVDK- 276 (420)
T ss_pred HHHHhCCCC----cEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHh---cCCCCCHHHHHHHHHH-
Confidence 544332221 13444431 1224454444322 125678999999988764 3566788999999986
Q ss_pred HHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 361 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ ++....+.+..-+|-|+ +++++++++..++++.++. .+++.+|.|.+++.
T Consensus 277 i-~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~~~p~pGT~ 329 (420)
T TIGR01578 277 F-RERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINITKFSPRPGTP 329 (420)
T ss_pred H-HHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEEeeCCCCCc
Confidence 3 44423345554455453 6899999999999998874 79999999988764
No 108
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.03 E-value=3.8e-08 Score=104.47 Aligned_cols=184 Identities=16% Similarity=0.213 Sum_probs=125.2
Q ss_pred CceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC------HHHHH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN------VENVI 285 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln------~d~vi 285 (477)
++....+..+.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.| ..-... .+.+.
T Consensus 122 ~~~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~------~G~~ei~l~~-~~~~~yg~d~~~~~~l~ 194 (418)
T PRK14336 122 PPVSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVR------RGSREVVLLG-QNVDSYGHDLPEKPCLA 194 (418)
T ss_pred CCeEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHH------CCCeEEEEEe-cCccccccCCCCcccHH
Confidence 3456677779999999999998753 44578899999999987643 3688899988 553321 12466
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCC---chHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHH
Q 011810 286 KAANIMVHEQGLHFSPRKVTVSTSG---LVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359 (477)
Q Consensus 286 ~~i~~l~~~~Gl~i~~r~ItvsTNG---i~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~ 359 (477)
++++.+.+..|+ .++.+++.- +.+++.+++... -..+.+.+.+.+++.-+. .++.++.+++.++++.
T Consensus 195 ~Ll~~l~~~~~~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~---M~R~~~~~~~~~~i~~ 267 (418)
T PRK14336 195 DLLSALHDIPGL----LRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAA---MRRGYTNQQYRELVER 267 (418)
T ss_pred HHHHHHHhcCCc----cEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHH---hCCCCCHHHHHHHHHH
Confidence 777766543443 246665422 335554444432 235678999999987664 3467888999999986
Q ss_pred HHHhhcCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 360 ELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 360 ~l~~~~~~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ .+....+.+..-+|-| =+++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 268 -l-r~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~pGT~ 320 (418)
T PRK14336 268 -L-KTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRPQTV 320 (418)
T ss_pred -H-HhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCCCCh
Confidence 3 4442234444444433 23889999999999998864 78888999988763
No 109
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.3e-08 Score=105.93 Aligned_cols=186 Identities=17% Similarity=0.358 Sum_probs=136.8
Q ss_pred CCceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-----CcccCC-HHHH
Q 011810 212 RGRTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----GEPLHN-VENV 284 (477)
Q Consensus 212 ~~r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-----GEPLln-~d~v 284 (477)
.++....|+.|.|||.+|.||..+.. |..+..++++|++++....+ .|+..|++.|. |--+-. ...+
T Consensus 141 ~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~------~G~kEI~L~gqdv~aYG~D~~~~~~~l 214 (437)
T COG0621 141 EGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVA------QGVKEIVLTGQDVNAYGKDLGGGKPNL 214 (437)
T ss_pred CCCeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHH------CCCeEEEEEEEehhhccccCCCCccCH
Confidence 35678888999999999999998864 45688899999999987654 47888888874 444321 1235
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCC---chHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011810 285 IKAANIMVHEQGLHFSPRKVTVSTSG---LVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358 (477)
Q Consensus 285 i~~i~~l~~~~Gl~i~~r~ItvsTNG---i~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~ 358 (477)
.++++.+.+-.|+. +|.+.|.= +.+.+.++..+. --.|-++|.+.++..-+ -.+++|+.++.++-++
T Consensus 215 ~~Ll~~l~~I~G~~----riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk---~M~R~yt~e~~~~~i~ 287 (437)
T COG0621 215 ADLLRELSKIPGIE----RIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILK---RMKRGYTVEEYLEIIE 287 (437)
T ss_pred HHHHHHHhcCCCce----EEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHH---HhCCCcCHHHHHHHHH
Confidence 66666666655653 68877754 345666666553 22456788888887644 3567899999999999
Q ss_pred HHHHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 359 EELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 359 ~~l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ + ++.-..+.|..-+|-|+ ..++++.+++.+|+++.+. ++++.+|.|-++++
T Consensus 288 k-~-R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTp 341 (437)
T COG0621 288 K-L-RAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTP 341 (437)
T ss_pred H-H-HHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCc
Confidence 8 4 45556688887777554 4789999999999999874 89999999987763
No 110
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.00 E-value=9.1e-08 Score=97.41 Aligned_cols=196 Identities=13% Similarity=0.135 Sum_probs=129.6
Q ss_pred CCCCCCCCCCCCCc---CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCCCCCe
Q 011810 228 NCQFCYTGRMGLKR---HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHFSPRK 303 (477)
Q Consensus 228 ~C~FC~tg~~g~~r---~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~i~~r~ 303 (477)
+|.||.....+... ..+.++|.+|+....+.+.. .+...|.|-| |.|+. ..+.+.++++.+.+... ...
T Consensus 39 gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~--~~~~~iyf~g-gt~t~l~~~~L~~l~~~i~~~~~----~~~ 111 (302)
T TIGR01212 39 GCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKK--DKKFIAYFQA-YTNTYAPVEVLKEMYEQALSYDD----VVG 111 (302)
T ss_pred CcccCCCCCCccccccccccCCCHHHHHHHHHHHhhc--cCEEEEEEEC-CCcCCCCHHHHHHHHHHHhCCCC----EEE
Confidence 79999876544322 23456788888877666543 2333355545 99995 56677777775543211 124
Q ss_pred EEEEcCC--chHHH-HHHH---hcCC-eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEe
Q 011810 304 VTVSTSG--LVPQL-KQFL---NESN-CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376 (477)
Q Consensus 304 ItvsTNG--i~p~i-~~L~---~~~d-~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI 376 (477)
+++.|+- +.++. +.|. +.+- ..|.+.+.+.+++..+.+ ++.++.+++.++++. .++.+..+.. -+|
T Consensus 112 isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i---~Rg~t~~~~~~ai~~--l~~~gi~v~~--~lI 184 (302)
T TIGR01212 112 LSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI---NRGHDFACYVDAVKR--ARKRGIKVCS--HVI 184 (302)
T ss_pred EEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH---cCcChHHHHHHHHHH--HHHcCCEEEE--eEE
Confidence 7777653 33333 2222 3342 568899999999988765 456789999999996 4667766555 344
Q ss_pred CCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC---------CCCCCcHHH-HHHHHHHHHhCCCeEEe
Q 011810 377 AGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS---------QFTPTTDEK-MIEFRNILAGAGCTVFL 437 (477)
Q Consensus 377 ~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~---------~~~~ps~e~-l~~f~~~L~~~Gi~v~v 437 (477)
-|+ .++.+++.+.++++..++. .|.+.++.|.+++ .+.+++.++ ++...+.++.....+.|
T Consensus 185 ~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i 257 (302)
T TIGR01212 185 LGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVI 257 (302)
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEE
Confidence 343 5889999999999999875 7888898888764 367777766 66666666665554433
No 111
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.00 E-value=8.7e-08 Score=102.82 Aligned_cols=183 Identities=14% Similarity=0.228 Sum_probs=121.3
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCH--------HHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV--------ENV 284 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~--------d~v 284 (477)
+....+..+.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.| .....+. ..+
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~------~G~~ei~l~g-~~~~~y~~~~~~~~~~~~ 223 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSE------KGVREITLLG-QNVNSYRGRDREGNIVTF 223 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHH------CCCeEEEEEe-ecccccccccccCCccCH
Confidence 344556668999999999998753 34467899999999986543 3678888987 4433220 124
Q ss_pred HHHHHHHHHh----cCCCCCCCeEEEEcC---CchHHHHHHHhc---CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHH
Q 011810 285 IKAANIMVHE----QGLHFSPRKVTVSTS---GLVPQLKQFLNE---SNCALAVSLNATTDEVRNWIMPINRKYKLGLLI 354 (477)
Q Consensus 285 i~~i~~l~~~----~Gl~i~~r~ItvsTN---Gi~p~i~~L~~~---~d~~LaISL~a~~~e~r~~I~pi~~~~~le~il 354 (477)
.++++.+.+. .++ ..+.+.+. .+.+.+.+++.. +-..+.+.+.+.+++..+. .++.++.+++.
T Consensus 224 ~~Ll~~l~~~~~~~~~i----~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~---m~R~~t~e~~~ 296 (455)
T PRK14335 224 PQLLRHIVRRAEVTDQI----RWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKR---MNRSYTREHYL 296 (455)
T ss_pred HHHHHHHHHhhcccCCc----eEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHH---cCCCCCHHHHH
Confidence 5555544321 223 24554332 234555554443 3346678999999988764 45778999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 355 ETLREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 355 e~l~~~l~~~~~~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+.++. + ++....+.+..-+|=| =+++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 297 ~~v~~-i-r~~~pgi~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~ 354 (455)
T PRK14335 297 SLVGK-L-KASIPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTP 354 (455)
T ss_pred HHHHH-H-HHhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCc
Confidence 99997 3 4442234444444433 24899999999999999874 78999999998864
No 112
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.99 E-value=8e-08 Score=104.30 Aligned_cols=184 Identities=17% Similarity=0.313 Sum_probs=125.6
Q ss_pred CceeEEEEecCccCCCCCCCCCCC-CCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-----CcccCC-HHHHH
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTGR-MGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----GEPLHN-VENVI 285 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg~-~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-----GEPLln-~d~vi 285 (477)
++....|..+.|||.+|.||..+. .|..|..++++|++++....+ .++..|+|.|. |..+.+ ...+.
T Consensus 210 ~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~------~G~keI~L~g~n~~~yg~d~~~~~~~l~ 283 (509)
T PRK14327 210 GNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLAR------QGYKEITLLGQNVNAYGKDFEDIEYGLG 283 (509)
T ss_pred CCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHH------CCCcEEEEEeeccccCcccccccchHHH
Confidence 567788999999999999999864 344578899999999987543 25677778762 322222 12355
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCC---chHHHHHHHhc-CCe--EEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHH
Q 011810 286 KAANIMVHEQGLHFSPRKVTVSTSG---LVPQLKQFLNE-SNC--ALAVSLNATTDEVRNWIMPINRKYKLGLLIETLRE 359 (477)
Q Consensus 286 ~~i~~l~~~~Gl~i~~r~ItvsTNG---i~p~i~~L~~~-~d~--~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~ 359 (477)
++++.+.+ .++. ++.++|.- +.+.+.+++.. +.+ .|.+.+.+.+++..+. .+++|+.+++++.++.
T Consensus 284 ~Ll~~I~~-~~i~----~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~---M~R~~t~e~~~~~v~~ 355 (509)
T PRK14327 284 DLMDEIRK-IDIP----RVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKI---MARKYTRESYLELVRK 355 (509)
T ss_pred HHHHHHHh-CCCc----eEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHh---cCCCCCHHHHHHHHHH
Confidence 66665543 2442 56666632 33555555543 322 6789999999988754 4577899999999997
Q ss_pred HHHhhcCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 360 ELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 360 ~l~~~~~~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ ++....+.+..-+|-| -+++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 356 -l-r~~~p~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~ 408 (509)
T PRK14327 356 -I-KEAIPNVALTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPREGTP 408 (509)
T ss_pred -H-HHhCCCcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCc
Confidence 3 4444445554434323 23889999999999998864 78888899988764
No 113
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.98 E-value=9.4e-08 Score=102.89 Aligned_cols=184 Identities=14% Similarity=0.232 Sum_probs=122.1
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC---------ccc-CCHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG---------EPL-HNVE 282 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG---------EPL-ln~d 282 (477)
+....+.++.|||.+|.||..+.. |..|..++++|++++....+ .++..|+|.|.. .|. .+..
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~------~g~~eI~l~~~~~~~y~~d~~~~~~~~~~ 240 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFA------KGYKEVTLLGQNVDSYLWYGGGLKKDEAV 240 (467)
T ss_pred CcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHH------CCCeEEEEEeecccccccccCCccccccc
Confidence 456677789999999999997653 34578899999999987543 257778777621 110 0112
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEc---CCchHHHHHHHhc---CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHH
Q 011810 283 NVIKAANIMVHEQGLHFSPRKVTVST---SGLVPQLKQFLNE---SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356 (477)
Q Consensus 283 ~vi~~i~~l~~~~Gl~i~~r~ItvsT---NGi~p~i~~L~~~---~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~ 356 (477)
.+.++++.+.+..+ ..++.+++ +.+.+.+.+++.. +-..|.+.+.+.+++..+. .+++++.+++.+.
T Consensus 241 ~l~~Ll~~l~~~~~----~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~---m~R~~t~~~~~~~ 313 (467)
T PRK14329 241 NFAQLLEMVAEAVP----DMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKL---MNRKYTREWYLDR 313 (467)
T ss_pred cHHHHHHHHHhcCC----CcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHh---cCCCCCHHHHHHH
Confidence 35555554443221 12466665 2334555555543 3346789999999987664 4677888999888
Q ss_pred HHHHHHhhcCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCCC
Q 011810 357 LREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ 412 (477)
Q Consensus 357 l~~~l~~~~~~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~-~~VnLipynp~~~~~ 412 (477)
++. + ++....+.+..-+|-| =+++++++++..+|++.++ ..+++.+|.|.+++.
T Consensus 314 i~~-i-r~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~ 369 (467)
T PRK14329 314 IDA-I-RRIIPDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTY 369 (467)
T ss_pred HHH-H-HHhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCCh
Confidence 886 3 4433334444444433 2488999999999999987 478889999988764
No 114
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.97 E-value=8.2e-08 Score=102.79 Aligned_cols=183 Identities=14% Similarity=0.238 Sum_probs=122.6
Q ss_pred eeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-----------CcccC-CH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-----------GEPLH-NV 281 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-----------GEPLl-n~ 281 (477)
....|.++.|||.+|.||..+.. |..+..++++|++++....+ .++..|+|.|. +.|.. +.
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~------~g~kei~l~~~~~~~yg~d~~~~~p~~~~~ 221 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAA------QGYKEITLLGQNIDAYGRDLPGTTPEGRHQ 221 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHH------CCCcEEEEEecccchhcCCCCCcccccccc
Confidence 34556778999999999997753 34467889999999986543 35777777651 22332 12
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcC---CchHHHHHHHhcC---CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHH
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTS---GLVPQLKQFLNES---NCALAVSLNATTDEVRNWIMPINRKYKLGLLIE 355 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTN---Gi~p~i~~L~~~~---d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile 355 (477)
+.+.++++.+.+..|+. ++.+++. .+.+.+.+++... -..+.+.+.+.+++..+. .++.++.++..+
T Consensus 222 ~~l~~Ll~~i~~~~~~~----rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~---m~R~~t~e~~~~ 294 (448)
T PRK14333 222 HTLTDLLYYIHDVEGIE----RIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKA---MARGYTHEKYRR 294 (448)
T ss_pred ccHHHHHHHHHhcCCCe----EEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHh---cCCCCCHHHHHH
Confidence 34566666555444542 5666432 1335555554432 235568889999988764 456788999999
Q ss_pred HHHHHHHhhcCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 356 TLREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 356 ~l~~~l~~~~~~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
.++. + ++....+.+..-+|-| -+++++++++..+|++.++. .+++.+|.|.+++.
T Consensus 295 ~i~~-l-r~~~p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~ 351 (448)
T PRK14333 295 IIDK-I-REYMPDASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTP 351 (448)
T ss_pred HHHH-H-HHhCCCcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCc
Confidence 9997 3 4453345455444433 24899999999999999874 78999999998875
No 115
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=98.96 E-value=1.2e-07 Score=101.08 Aligned_cols=203 Identities=16% Similarity=0.165 Sum_probs=131.3
Q ss_pred CccCCCCCCCCCCCC-CCCcCC---CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011810 223 VGCAMNCQFCYTGRM-GLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 297 (477)
Q Consensus 223 ~GCnl~C~FC~tg~~-g~~r~L---t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl 297 (477)
-=|+..|.||..... +..... ..+.+++++....+.+. ...+..|.|.| |+|++ +.+.+.++++.+.+..++
T Consensus 47 PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~--~~~i~~i~~GG-GTPs~l~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 47 PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALA--PARFASFAVGG-GTPTLLNAAELEKLFDSVERVLGV 123 (430)
T ss_pred CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcC--CCceeEEEEcC-CccccCCHHHHHHHHHHHHHhCCC
Confidence 339999999986543 221111 23455555554333221 23577787866 99987 567777777766554444
Q ss_pred CCCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEE
Q 011810 298 HFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 374 (477)
Q Consensus 298 ~i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyv 374 (477)
......+++.||.- . +.++.+.+.+-..|.+.+.+.+++..+.+ ++.++.++++++++. ..+.+.++ +..-
T Consensus 124 ~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~~~~~~~~ai~~--l~~~g~~~-i~~d 197 (430)
T PRK08208 124 DLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL---HRPQKRADVHQALEW--IRAAGFPI-LNID 197 (430)
T ss_pred CCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh---CCCCCHHHHHHHHHH--HHHcCCCe-EEEE
Confidence 31123589999973 3 45666666665678899999998877654 455688999999996 46666543 2222
Q ss_pred EeCC-CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC---CCCcHH----HHHHHHHHHHhCCCe
Q 011810 375 MLAG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF---TPTTDE----KMIEFRNILAGAGCT 434 (477)
Q Consensus 375 LI~G-vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~---~~ps~e----~l~~f~~~L~~~Gi~ 434 (477)
+|-| -+++.+++++..+++..+++ +|.+.++.+.+++.+ ..++.+ ..+...+.|.+.|+.
T Consensus 198 lI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 198 LIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred eecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 3433 24788999999999998864 888888887766532 122222 344556778888985
No 116
>PLN02428 lipoic acid synthase
Probab=98.92 E-value=3.1e-07 Score=94.99 Aligned_cols=197 Identities=10% Similarity=0.120 Sum_probs=129.2
Q ss_pred cCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc----ccCCHHHHHHHHHHHHHhcCC
Q 011810 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE----PLHNVENVIKAANIMVHEQGL 297 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE----PLln~d~vi~~i~~l~~~~Gl 297 (477)
..||+.+|.||+.+.........++|+.+.+..+.+ .+++.|+|+| |. |-...+.+.+.++.|.+...
T Consensus 109 g~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~------~Glk~vvltS-g~rddl~D~ga~~~~elir~Ir~~~P- 180 (349)
T PLN02428 109 GDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIAS------WGVDYVVLTS-VDRDDLPDGGSGHFAETVRRLKQLKP- 180 (349)
T ss_pred cCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHH------cCCCEEEEEE-cCCCCCCcccHHHHHHHHHHHHHhCC-
Confidence 589999999999765322234557777776665443 3677899998 74 33445567777776655332
Q ss_pred CCCCCeEEEEcCCc---hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEE
Q 011810 298 HFSPRKVTVSTSGL---VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 374 (477)
Q Consensus 298 ~i~~r~ItvsTNGi---~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyv 374 (477)
.-++.+.|-++ .+.++.|.+.+...+...+++ .+..+..+.+ ++.++++.++.++. ..+....+.+..-
T Consensus 181 ---~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~--~~~sye~~Le~L~~--ak~~~pGi~tkSg 252 (349)
T PLN02428 181 ---EILVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRD--PRAGYKQSLDVLKH--AKESKPGLLTKTS 252 (349)
T ss_pred ---CcEEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcC--CCCCHHHHHHHHHH--HHHhCCCCeEEEe
Confidence 12477776654 246777777775456666775 4567776652 23467899999986 3444223344445
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCe-EEEEee-cCCCCC-C-CCCCcHHHHHHHHHHHHhCCCe
Q 011810 375 MLAGVNDSFDDAKRLIGLVQGIPCK-INLISF-NPHCGS-Q-FTPTTDEKMIEFRNILAGAGCT 434 (477)
Q Consensus 375 LI~GvNDs~ed~~~La~ll~~l~~~-VnLipy-np~~~~-~-~~~ps~e~l~~f~~~L~~~Gi~ 434 (477)
+|=|+.++++|+.++.++++.+++. +-+-.| .|.... . .+-.++++.++++++..+.|+.
T Consensus 253 ~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~ 316 (349)
T PLN02428 253 IMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFR 316 (349)
T ss_pred EEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCc
Confidence 5557889999999999999999864 333344 443221 1 1234578899999999999986
No 117
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=98.90 E-value=6.1e-07 Score=94.79 Aligned_cols=203 Identities=15% Similarity=0.186 Sum_probs=131.3
Q ss_pred CccCCCCCCCCCCCCCC---C--c-CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhc
Q 011810 223 VGCAMNCQFCYTGRMGL---K--R-HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQ 295 (477)
Q Consensus 223 ~GCnl~C~FC~tg~~g~---~--r-~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~ 295 (477)
-=|...|.||.-..... . + .-..++-++.+..-.+........+..|.|-| |.|++ +.+.+.++++.+.+..
T Consensus 18 PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GG-GTps~l~~~~l~~ll~~i~~~~ 96 (400)
T PRK07379 18 PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGG-GTPSLLSVEQLERILTTLDQRF 96 (400)
T ss_pred ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECC-CccccCCHHHHHHHHHHHHHhC
Confidence 33999999998643211 1 1 11122233333222121111224688787766 99995 7788888888776554
Q ss_pred CCCCCCCeEEEEcCC--ch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEE
Q 011810 296 GLHFSPRKVTVSTSG--LV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLF 371 (477)
Q Consensus 296 Gl~i~~r~ItvsTNG--i~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~i 371 (477)
++. ....+++.+|- +. +.++.+.+.+-..|.+.+.+.+++..+.+ ++.++.+++.++++. +++.|.. +.+
T Consensus 97 ~~~-~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l---~R~~~~~~~~~ai~~--l~~~G~~~v~~ 170 (400)
T PRK07379 97 GIA-PDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALC---GRSHRVKDIFAAVDL--IHQAGIENFSL 170 (400)
T ss_pred CCC-CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHh---CCCCCHHHHHHHHHH--HHHcCCCeEEE
Confidence 442 12368888872 33 45666666665677899999999988765 456788999999996 4666655 444
Q ss_pred EEEE-eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCCC---------CCCCcHHHH----HHHHHHHHhCCCe
Q 011810 372 EYVM-LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ---------FTPTTDEKM----IEFRNILAGAGCT 434 (477)
Q Consensus 372 eyvL-I~GvNDs~ed~~~La~ll~~l~-~~VnLipynp~~~~~---------~~~ps~e~l----~~f~~~L~~~Gi~ 434 (477)
-.++ +|| .+.+++++..+++..++ .+|.+.++.+.+++. +..|+.++. +...+.|.++|+.
T Consensus 171 dlI~GlPg--qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 171 DLISGLPH--QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred EeecCCCC--CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3322 354 78899999999998886 488888888776642 345665443 3455778888875
No 118
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.90 E-value=2.2e-08 Score=100.85 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=108.0
Q ss_pred cCccCCCCCCCCCCCCCCC--------cC-CCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 222 QVGCAMNCQFCYTGRMGLK--------RH-LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g~~--------r~-Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
+.-||.+|.||......++ +. -+.++|+..+... +-..+.++| |||++-.+.+++.++.+.
T Consensus 35 TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~---------~a~GasiTG-GdPl~~ieR~~~~ir~LK 104 (353)
T COG2108 35 TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLM---------DALGASITG-GDPLLEIERTVEYIRLLK 104 (353)
T ss_pred ecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHh---------ccccccccC-CChHHHHHHHHHHHHHHH
Confidence 6789999999997643321 22 2456666665532 223455789 999999999999999999
Q ss_pred HhcCCCCCCCeEEEEcCCch---HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeE
Q 011810 293 HEQGLHFSPRKVTVSTSGLV---PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNGi~---p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V 369 (477)
++.|-. .+|.+.|+|+. +.+++|.+.+..-+.+....++. + ..++.+++++. +.+.+..+
T Consensus 105 ~efG~~---fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~-----------~-~~e~~i~~l~~--A~~~g~dv 167 (353)
T COG2108 105 DEFGED---FHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGS-----------K-SSEKYIENLKI--AKKYGMDV 167 (353)
T ss_pred Hhhccc---eeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccc-----------c-ccHHHHHHHHH--HHHhCccc
Confidence 988765 37999999985 46777877774444444432221 1 23667888884 56788899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCC-CeEEEEe
Q 011810 370 LFEYVMLAGVNDSFDDAKRLIGLVQGIP-CKINLIS 404 (477)
Q Consensus 370 ~ieyvLI~GvNDs~ed~~~La~ll~~l~-~~VnLip 404 (477)
-+|+..+||. ++.+.++++++.+.+ ..+|+-.
T Consensus 168 G~EiPaipg~---e~~i~e~~~~~~~~~~~FlNiNE 200 (353)
T COG2108 168 GVEIPAIPGE---EEAILEFAKALDENGLDFLNINE 200 (353)
T ss_pred eeecCCCcch---HHHHHHHHHHHHhcccceeeeee
Confidence 9999999984 557788889988776 4566544
No 119
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=98.86 E-value=2.1e-06 Score=88.00 Aligned_cols=206 Identities=16% Similarity=0.160 Sum_probs=128.9
Q ss_pred EecCccCC----CCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC---cccC-CHHHHHHHHHHH
Q 011810 220 SSQVGCAM----NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG---EPLH-NVENVIKAANIM 291 (477)
Q Consensus 220 Ssq~GCnl----~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG---EPLl-n~d~vi~~i~~l 291 (477)
-.+.||++ +|.||...... .+..+++++.+|+....+.+........--+|++ | +|.. ..+.+.++++.+
T Consensus 20 ~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~s-gsf~D~~~~~~~~~~~i~~~l 97 (313)
T TIGR01210 20 LRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTS-GSFLDDREVPKETRNYIFEKI 97 (313)
T ss_pred EeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcccccEEEEEecC-CCcCCcCcCCHHHHHHHHHHH
Confidence 34799999 59999754433 2356999999999988766532100011123555 5 5544 445566666655
Q ss_pred HHhcC-CCCCCCeEEEEcCC--ch-HHHHHHHhcCC-eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcC
Q 011810 292 VHEQG-LHFSPRKVTVSTSG--LV-PQLKQFLNESN-CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN 366 (477)
Q Consensus 292 ~~~~G-l~i~~r~ItvsTNG--i~-p~i~~L~~~~d-~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~ 366 (477)
.+ .+ + ..++++|+- +. +.+..+.+.+- ..|.+-+.+.+++..++. +++.++.+++.++++. ..+.|
T Consensus 98 ~~-~~~~----~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~--inKg~t~~~~~~ai~~--~~~~G 168 (313)
T TIGR01210 98 AQ-RDNL----KEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKS--INKGSTFEDFIRAAEL--ARKYG 168 (313)
T ss_pred Hh-cCCc----ceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHh--hCCCCCHHHHHHHHHH--HHHcC
Confidence 44 33 2 357787764 33 45666666653 368899999999988532 3567789999999996 57778
Q ss_pred CeEEEEEEE-eCCCC--CCHHHHHHHHHHHhcCCCeEEEEeecCCCCC---------CCCCCcHHHHHHHHHHHHhCCCe
Q 011810 367 YKVLFEYVM-LAGVN--DSFDDAKRLIGLVQGIPCKINLISFNPHCGS---------QFTPTTDEKMIEFRNILAGAGCT 434 (477)
Q Consensus 367 ~~V~ieyvL-I~GvN--Ds~ed~~~La~ll~~l~~~VnLipynp~~~~---------~~~~ps~e~l~~f~~~L~~~Gi~ 434 (477)
..+...+++ +|+.+ ++.+++.+.++++..++.+|.+.|+++.+++ .|++|....+.+..+.+++.+..
T Consensus 169 i~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lws~~e~l~e~~~~~~~ 248 (313)
T TIGR01210 169 AGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAKKIGAE 248 (313)
T ss_pred CcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcCCcEEEECCEEeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCe
Confidence 776554332 24432 3456666677888777667888888877764 46777544444433444444444
Q ss_pred EE
Q 011810 435 VF 436 (477)
Q Consensus 435 v~ 436 (477)
|.
T Consensus 249 ~~ 250 (313)
T TIGR01210 249 VL 250 (313)
T ss_pred EE
Confidence 43
No 120
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.81 E-value=8.4e-08 Score=100.26 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=107.4
Q ss_pred CCC--CCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcC
Q 011810 232 CYT--GRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTS 309 (477)
Q Consensus 232 C~t--g~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTN 309 (477)
|+. ...++.-..|.++|-+.+...++. +..+...|.|+| |||++. +.+.++++ ++++.|+. +|.+.||
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e---~p~~~~aIq~tG-GEPTvr-~DL~eiv~-~a~e~g~~----hVqinTn 147 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKE---HPVGANAVQFTG-GEPTLR-DDLIEIIK-IAREEGYD----HVQLNTN 147 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhc---CCCCCceeEecC-CCccch-hhHHHHHH-HHhhcCcc----EEEEccC
Confidence 663 345666677877766666554432 113457899999 999999 56899998 67888986 8999999
Q ss_pred Cch----HH-HHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcC-CeEEEEEEEeCCCCCCH
Q 011810 310 GLV----PQ-LKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN-YKVLFEYVMLAGVNDSF 383 (477)
Q Consensus 310 Gi~----p~-i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~-~~V~ieyvLI~GvNDs~ 383 (477)
|+- +. .++|.+.+...|.+|+|+.+++.+.+. -+.+.+.+++++ +.| ..+.+--+|++|+||.
T Consensus 148 GirlA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r-----~~g~~svVLVptl~rgvNd~- 216 (475)
T COG1964 148 GIRLAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCR-----KAGLPSVVLVPTLIRGVNDH- 216 (475)
T ss_pred ceeeccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHH-----hcCCCcEEEEeehhcccChH-
Confidence 983 33 466667777788999999999886554 233444444444 344 3366666789999986
Q ss_pred HHHHHHHHHHhc-CCC--eEEEEeec
Q 011810 384 DDAKRLIGLVQG-IPC--KINLISFN 406 (477)
Q Consensus 384 ed~~~La~ll~~-l~~--~VnLipyn 406 (477)
++..+++|... +.+ .||+.|+.
T Consensus 217 -~lG~iirfa~~n~dvVrgVnfQPVs 241 (475)
T COG1964 217 -ELGAIIRFALNNIDVVRGVNFQPVS 241 (475)
T ss_pred -HHHHHHHHHHhccccccccceEEEE
Confidence 68889998874 332 57777764
No 121
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=98.79 E-value=2.2e-06 Score=90.32 Aligned_cols=200 Identities=13% Similarity=0.176 Sum_probs=125.3
Q ss_pred CccCCCCCCCCCCCCCCCcCCCHHHHHH----HHHHHHHHhcccCCCeeEEEEecCCccc-CCHHHHHHHHHHHHHhcCC
Q 011810 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVE----QAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHEQGL 297 (477)
Q Consensus 223 ~GCnl~C~FC~tg~~g~~r~Lt~eEIv~----qv~~~~~~~~~~~~~v~nIvF~GmGEPL-ln~d~vi~~i~~l~~~~Gl 297 (477)
-=|.-.|.||.-......+ ...+.-++ ++....+.+. +..++.|.|-| |.|+ +..+.+.++++.+.+..++
T Consensus 19 PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~--~~~i~tiy~GG-GTPs~l~~~~l~~ll~~i~~~~~~ 94 (390)
T PRK06582 19 PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQ--NKYIKSIFFGG-GTPSLMNPVIVEGIINKISNLAII 94 (390)
T ss_pred CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHcc--CCceeEEEECC-CccccCCHHHHHHHHHHHHHhCCC
Confidence 4499999999854332211 12233333 3332222221 24688887777 9995 5667777777766554333
Q ss_pred CCCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEE
Q 011810 298 HFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 374 (477)
Q Consensus 298 ~i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyv 374 (477)
. ....+++.+|.- . +.++.|.+.+-..|.+.+.+.+++..+. .++.++.++++++++. ..+....|.+-.+
T Consensus 95 ~-~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~---lgR~h~~~~~~~ai~~--~~~~~~~v~~DlI 168 (390)
T PRK06582 95 D-NQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKK---LGRTHDCMQAIKTIEA--ANTIFPRVSFDLI 168 (390)
T ss_pred C-CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHH---cCCCCCHHHHHHHHHH--HHHhCCcEEEEee
Confidence 2 234699999974 2 4667777777667889999999987765 3466788999999986 3444444555433
Q ss_pred E-eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCC---------CCCCCcHHHH----HHHHHHHHhCCCe
Q 011810 375 M-LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGS---------QFTPTTDEKM----IEFRNILAGAGCT 434 (477)
Q Consensus 375 L-I~GvNDs~ed~~~La~ll~~l~-~~VnLipynp~~~~---------~~~~ps~e~l----~~f~~~L~~~Gi~ 434 (477)
. +|| .+.++..+-++.+..++ .+|.+.++...+++ .+..|+.++. +...+.|.+.|+.
T Consensus 169 ~GlPg--qt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~ 241 (390)
T PRK06582 169 YARSG--QTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF 241 (390)
T ss_pred cCCCC--CCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 3 355 55677777666665664 48888887766543 3455665443 3445778888874
No 122
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=98.78 E-value=1.6e-06 Score=90.28 Aligned_cols=197 Identities=13% Similarity=0.190 Sum_probs=129.0
Q ss_pred cCCCCCCCCCCCCCCCcCC---CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCCC
Q 011810 225 CAMNCQFCYTGRMGLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHFS 300 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~~r~L---t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~i~ 300 (477)
|...|.||.-... ..... ..+..++++....+.+. ...++.|.|-| |-|++ ..+.+.+.++.+.+. +. .
T Consensus 16 C~~kC~yC~f~~~-~~~~~~~~~~~~~~~~l~~ei~~~~--~~~~~tiy~GG-GTPs~L~~~~l~~ll~~i~~~--~~-~ 88 (353)
T PRK05904 16 CQYICTFCDFKRI-LKTPQTKKIFKDFLKNIKMHIKNFK--IKQFKTIYLGG-GTPNCLNDQLLDILLSTIKPY--VD-N 88 (353)
T ss_pred ccCcCCCCCCeec-cCCcccHHHHHHHHHHHHHHHHHhc--CCCeEEEEECC-CccccCCHHHHHHHHHHHHHh--cC-C
Confidence 9999999986543 11111 12334444443322222 24577777766 99986 667777777766443 21 2
Q ss_pred CCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEEEE-
Q 011810 301 PRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYVM- 375 (477)
Q Consensus 301 ~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~ieyvL- 375 (477)
...+++.+|.- . +.++.+.+.+-..|.+.+.+.+++..+.+ ++.++.++++++++. .++.+.. +.+..+.
T Consensus 89 ~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l---~R~~~~~~~~~ai~~--lr~~G~~~v~~dlI~G 163 (353)
T PRK05904 89 NCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQL---NRTHTIQDSKEAINL--LHKNGIYNISCDFLYC 163 (353)
T ss_pred CCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCcEEEEEeec
Confidence 34699999874 2 45666666665577899999999988754 356788999999996 4556643 4444332
Q ss_pred eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCCCC----CCCc----HHHHHHHHHHHHhCCCeE
Q 011810 376 LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQF----TPTT----DEKMIEFRNILAGAGCTV 435 (477)
Q Consensus 376 I~GvNDs~ed~~~La~ll~~l~-~~VnLipynp~~~~~~----~~ps----~e~l~~f~~~L~~~Gi~v 435 (477)
+|| ++.+++++..+++..++ .+|.+.++.+.+++.+ ..++ .+.++...+.|++.|+.-
T Consensus 164 lPg--qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 230 (353)
T PRK05904 164 LPI--LKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKR 230 (353)
T ss_pred CCC--CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcE
Confidence 354 78899999999999886 4888888887766532 1122 234556667888889853
No 123
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=98.76 E-value=2.7e-06 Score=89.77 Aligned_cols=199 Identities=14% Similarity=0.144 Sum_probs=128.9
Q ss_pred cCCCCCCCCCCCCCCCc--CCC----HHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011810 225 CAMNCQFCYTGRMGLKR--HLT----AAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 297 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~~r--~Lt----~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl 297 (477)
|.-+|.||.-....... ... .+.+..++......+. +..+..|.|-| |.|++ ..+.+.++++.+.+...+
T Consensus 29 C~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~--~~~i~siy~GG-GTPs~L~~~~L~~ll~~i~~~~~~ 105 (394)
T PRK08898 29 CVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVW--GRQVHTVFIGG-GTPSLLSAAGLDRLLSDVRALLPL 105 (394)
T ss_pred ccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcc--CCceeEEEECC-CCcCCCCHHHHHHHHHHHHHhCCC
Confidence 99999999854332211 122 3334444432221111 24677787766 99997 567788888877665444
Q ss_pred CCCCCeEEEEcCC-c--hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEE
Q 011810 298 HFSPRKVTVSTSG-L--VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 374 (477)
Q Consensus 298 ~i~~r~ItvsTNG-i--~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyv 374 (477)
. ....+++.+|- . .+.++.|.+.+-..|.+.+.+.+++..+.+ ++.++.+++.++++. ..+....+.+ -
T Consensus 106 ~-~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l---~R~~~~~~~~~~i~~--~~~~~~~v~~--d 177 (394)
T PRK08898 106 D-PDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKAL---GRIHDGAEARAAIEI--AAKHFDNFNL--D 177 (394)
T ss_pred C-CCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHh---CCCCCHHHHHHHHHH--HHHhCCceEE--E
Confidence 2 23479999984 2 256777777775567899999999998765 344567888888875 3444444544 4
Q ss_pred EeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC-----CCCcHHHH----HHHHHHHHhCCCe
Q 011810 375 MLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF-----TPTTDEKM----IEFRNILAGAGCT 434 (477)
Q Consensus 375 LI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~-----~~ps~e~l----~~f~~~L~~~Gi~ 434 (477)
+|-|+ +++.+++.+-++.+..++. +|.+.++.+.+++.+ ..|+.+.. +...+.|.+.|+.
T Consensus 178 lI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 248 (394)
T PRK08898 178 LMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLAAAGYA 248 (394)
T ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 55454 4788899988888888864 899988887776532 23444443 3345678888874
No 124
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=98.76 E-value=9.7e-07 Score=91.70 Aligned_cols=170 Identities=20% Similarity=0.175 Sum_probs=113.6
Q ss_pred EEecCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc-CCHHHHHHHHHHHHHh
Q 011810 219 VSSQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHE 294 (477)
Q Consensus 219 VSsq~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL-ln~d~vi~~i~~l~~~ 294 (477)
|..+.+|+.+|.||.-.+.. ....++.+||++.+..+.+ .+++.|.+.| |+.. +..+.+.++++.+.+.
T Consensus 52 in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~------~G~~~v~l~~-G~~p~~~~~~~~e~i~~Ik~~ 124 (351)
T TIGR03700 52 LNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYA------PGATEVHIVG-GLHPNLPFEWYLDMIRTLKEA 124 (351)
T ss_pred cccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHH------CCCcEEEEec-CCCCCCCHHHHHHHHHHHHHH
Confidence 33479999999999965421 1223899999999887643 4788899998 8754 3457888888877655
Q ss_pred c-CCCCCCCeEEEE----------cCCch--HHHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 295 Q-GLHFSPRKVTVS----------TSGLV--PQLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 295 ~-Gl~i~~r~Itvs----------TNGi~--p~i~~L~~~~d~~La-ISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
. +++ +... ..|.. +.+++|.+.+-..+. ..+...+++.+.++.|. +.+.++.++.++.
T Consensus 125 ~p~i~-----i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~--~~~~~~~l~~i~~- 196 (351)
T TIGR03700 125 YPDLH-----VKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPE--KISAERWLEIHRT- 196 (351)
T ss_pred CCCce-----EEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCC--CCCHHHHHHHHHH-
Confidence 3 333 3322 24653 347888887732221 35666788888887764 3457888899996
Q ss_pred HHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC----eEEEEeec
Q 011810 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC----KINLISFN 406 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~----~VnLipyn 406 (477)
+.+.|.+++- .+|=|.-+++++..+....++++.. ...++|++
T Consensus 197 -a~~~Gi~~~s--g~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~ 243 (351)
T TIGR03700 197 -AHELGLKTNA--TMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLA 243 (351)
T ss_pred -HHHcCCCcce--EEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeec
Confidence 5667776654 3445666788888887787877753 22456654
No 125
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=98.74 E-value=2.2e-06 Score=87.99 Aligned_cols=202 Identities=19% Similarity=0.301 Sum_probs=135.1
Q ss_pred cCccCCCCCCCCCCC---CCC--CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc--ccCCHHHHHHHHHHHHHh
Q 011810 222 QVGCAMNCQFCYTGR---MGL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE--PLHNVENVIKAANIMVHE 294 (477)
Q Consensus 222 q~GCnl~C~FC~tg~---~g~--~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE--PLln~d~vi~~i~~l~~~ 294 (477)
+.+|+-+|.||.... .+. ..-++.+||++....+.+. +-..-+..++ |+ + -..+.+.++++.+.++
T Consensus 58 tg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~-----Ga~r~c~~aa-gr~~~-~~~~~i~~~v~~Vk~~ 130 (335)
T COG0502 58 TGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAA-----GATRFCMGAA-GRGPG-RDMEEVVEAIKAVKEE 130 (335)
T ss_pred cCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHc-----CCceEEEEEe-ccCCC-ccHHHHHHHHHHHHHh
Confidence 355799999999542 222 2458899999999887653 2133444444 55 3 4567899999988878
Q ss_pred cCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE
Q 011810 295 QGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372 (477)
Q Consensus 295 ~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie 372 (477)
.|+. ++ -|-|++ +..++|.+.+-....--|++ +++.|++|.+.. ++++-++.++. .++.|..+..
T Consensus 131 ~~le-----~c-~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~---t~edR~~tl~~--vk~~Gi~vcs- 197 (335)
T COG0502 131 LGLE-----VC-ASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTR---TYEDRLNTLEN--VREAGIEVCS- 197 (335)
T ss_pred cCcH-----Hh-hccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCCC---CHHHHHHHHHH--HHHcCCcccc-
Confidence 8885 44 466764 57899998873333467788 889999998864 68999999996 5777766554
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC-C-eEEEEeecCCCCCCCC---CCcHHHHHHHHHHHHhCCCeEEecCCCCCc
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIP-C-KINLISFNPHCGSQFT---PTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~-~-~VnLipynp~~~~~~~---~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~d 444 (477)
-.|=|++.+.+|--+++..|+.++ . .|-+..++|.+|+++. +.++-+..+.....+-.--...||.+.|++
T Consensus 198 -GgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~ 273 (335)
T COG0502 198 -GGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSAGRE 273 (335)
T ss_pred -ceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccCCcc
Confidence 355688899999777888888776 3 5666678899888654 444333222222222222234555555543
No 126
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=98.73 E-value=2.9e-06 Score=89.01 Aligned_cols=198 Identities=12% Similarity=0.178 Sum_probs=128.4
Q ss_pred cCCCCCCCCCCCCCCCcCCC----HHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCC
Q 011810 225 CAMNCQFCYTGRMGLKRHLT----AAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHF 299 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~~r~Lt----~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~i 299 (477)
|.-.|.||.-......+ .. .+.+.+++....+.+. ...++.|.|-| |-|++ +.+.+.+.++.+.+...+.
T Consensus 14 C~~kC~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~--~~~i~tiy~GG-GTPs~l~~~~L~~ll~~i~~~f~~~- 88 (380)
T PRK09057 14 CLAKCPYCDFNSHVRHA-IDQARFAAAFLRELATEAARTG--PRTLTSIFFGG-GTPSLMQPETVAALLDAIARLWPVA- 88 (380)
T ss_pred cCCcCCCCCCcccCcCc-CCHHHHHHHHHHHHHHHHHHcC--CCCcCeEEeCC-CccccCCHHHHHHHHHHHHHhCCCC-
Confidence 99999999865432222 22 3444455544333332 23677777766 99996 5677888888766544432
Q ss_pred CCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEe
Q 011810 300 SPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVML 376 (477)
Q Consensus 300 ~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI 376 (477)
....+++.+|-- . +.++.|.+.+-..|.+-+.+.+++..+.+ ++.++.+++.++++. .++.+..|.+ -+|
T Consensus 89 ~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l---~R~~~~~~~~~ai~~--~~~~~~~v~~--dli 161 (380)
T PRK09057 89 DDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFL---GRLHSVAEALAAIDL--AREIFPRVSF--DLI 161 (380)
T ss_pred CCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHhCccEEE--Eee
Confidence 123589999852 2 56777777776677899999999887654 566789999999986 3444444444 344
Q ss_pred CCC-CCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCC---------CCCCCcHH----HHHHHHHHHHhCCCe
Q 011810 377 AGV-NDSFDDAKRLIGLVQGIP-CKINLISFNPHCGS---------QFTPTTDE----KMIEFRNILAGAGCT 434 (477)
Q Consensus 377 ~Gv-NDs~ed~~~La~ll~~l~-~~VnLipynp~~~~---------~~~~ps~e----~l~~f~~~L~~~Gi~ 434 (477)
-|+ +.+.++..+-.+.+..++ .+|.+.++.+.+++ .+..|+.+ .++...+.|++.|+.
T Consensus 162 ~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~ 234 (380)
T PRK09057 162 YARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLP 234 (380)
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc
Confidence 443 366777766555555565 48888888876653 34456654 455666778888874
No 127
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=98.73 E-value=3.3e-06 Score=90.63 Aligned_cols=201 Identities=16% Similarity=0.252 Sum_probs=130.2
Q ss_pred cCCCCCCCCCCCCCCCc---CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCCC
Q 011810 225 CAMNCQFCYTGRMGLKR---HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHFS 300 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~~r---~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~i~ 300 (477)
|+.+|.||.-....... .-..+.+++++....+........+..|.|-| |-|++ +.+.+.++++.+.+...+. .
T Consensus 71 C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GG-GTPs~L~~~~l~~ll~~i~~~~~l~-~ 148 (449)
T PRK09058 71 CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGG-GTPTALSAEDLARLITALREYLPLA-P 148 (449)
T ss_pred cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECC-CccccCCHHHHHHHHHHHHHhCCCC-C
Confidence 99999999854332111 11344455555433221000124577777766 99996 6777778777665554443 2
Q ss_pred CCeEEEEcCC--ch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcC-CeEEEEEEE-
Q 011810 301 PRKVTVSTSG--LV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN-YKVLFEYVM- 375 (477)
Q Consensus 301 ~r~ItvsTNG--i~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~-~~V~ieyvL- 375 (477)
...+++.+|= +. +.++.+.+.+-..|.+-+.+.+++..+.+ ++.++.++++++++. ..+.+ ..|.+-.+.
T Consensus 149 ~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~~~~~~~~~i~~--l~~~g~~~v~~DlI~G 223 (449)
T PRK09058 149 DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKDDREEVLARLEE--LVARDRAAVVCDLIFG 223 (449)
T ss_pred CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCCCHHHHHHHHHH--HHhCCCCcEEEEEEee
Confidence 2458998863 33 46666666666677889999999988765 455678999999996 35555 445554433
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC---------CCCCC-cHHH----HHHHHHHHHhCCCe
Q 011810 376 LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS---------QFTPT-TDEK----MIEFRNILAGAGCT 434 (477)
Q Consensus 376 I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~---------~~~~p-s~e~----l~~f~~~L~~~Gi~ 434 (477)
+|| ++.++.++-.+++..++. +|.+.++.+.+++ .+..| +.++ ++...+.|.++|+.
T Consensus 224 lPg--qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~ 295 (449)
T PRK09058 224 LPG--QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR 295 (449)
T ss_pred CCC--CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 355 678899998888888864 8998888887664 23344 4433 33445778889986
No 128
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=98.73 E-value=1.9e-06 Score=90.12 Aligned_cols=194 Identities=13% Similarity=0.232 Sum_probs=123.0
Q ss_pred cCCCCCCCCCCCCCCCcCCCHH----HHHHH-HHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCC
Q 011810 225 CAMNCQFCYTGRMGLKRHLTAA----EIVEQ-AVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLH 298 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~~r~Lt~e----EIv~q-v~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~ 298 (477)
|.-.|.||.-....... -..+ .++.+ +....+... ...++.|-|-| |.|++ ..+.+.++++.+.+..+
T Consensus 16 C~~~C~yC~f~~~~~~~-~~~~~y~~~l~~E~~~~~~~~~~--~~~i~~iy~GG-GTPs~l~~~~l~~ll~~i~~~~~-- 89 (370)
T PRK06294 16 CTKKCHYCSFYTIPYKE-ESVSLYCNAVLKEGLKKLAPLRC--SHFIDTVFFGG-GTPSLVPPALIQDILKTLEAPHA-- 89 (370)
T ss_pred ccCcCCCCcCcccCCCc-cCHHHHHHHHHHHHHHHhhhhcc--CCceeEEEECC-CccccCCHHHHHHHHHHHHhCCC--
Confidence 99999999754332111 1222 22222 211111111 13567676656 99997 45667777776543322
Q ss_pred CCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEEE
Q 011810 299 FSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEYV 374 (477)
Q Consensus 299 i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~ieyv 374 (477)
..+++++|-- . +.++.+.+.+-..|.+.+.+.+++..+.+ ++.++.++++++++. .++.+.. |.+.
T Consensus 90 ---~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l---~R~~~~~~~~~ai~~--~~~~g~~~v~~D-- 159 (370)
T PRK06294 90 ---TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLL---GRTHSSSKAIDAVQE--CSEHGFSNLSID-- 159 (370)
T ss_pred ---CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHc---CCCCCHHHHHHHHHH--HHHcCCCeEEEE--
Confidence 3599999853 3 45666666665677899999999887755 456788999999996 4566653 5444
Q ss_pred EeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC---------CCCCcHHH----HHHHHHHHHhCCCe
Q 011810 375 MLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---------FTPTTDEK----MIEFRNILAGAGCT 434 (477)
Q Consensus 375 LI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~---------~~~ps~e~----l~~f~~~L~~~Gi~ 434 (477)
+|-|+ .++.+++.+..+.+..++. +|.+.++.+.+++. ...|++++ .+...+.|.+.|+.
T Consensus 160 li~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~ 234 (370)
T PRK06294 160 LIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT 234 (370)
T ss_pred eecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCC
Confidence 45443 3688899998888888864 88888888776642 12355443 33445778888874
No 129
>PRK08445 hypothetical protein; Provisional
Probab=98.73 E-value=6.6e-07 Score=92.95 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=112.1
Q ss_pred cCccCCCCCCCCCCCC---CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCCHHHHHHHHHHHHHhcC-
Q 011810 222 QVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHEQG- 296 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~---g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln~d~vi~~i~~l~~~~G- 296 (477)
+.+|+.+|.||.-.+. .....++.+||++.+..+.+. +.+.|+++| |+ |.+..+.+.++++.+.+...
T Consensus 49 Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~------g~~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~p~ 121 (348)
T PRK08445 49 TNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAI------GGTQILFQG-GVHPKLKIEWYENLVSHIAQKYPT 121 (348)
T ss_pred ccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHc------CCCEEEEec-CCCCCCCHHHHHHHHHHHHHHCCC
Confidence 7999999999997652 222357999999999887542 567899998 64 55577888888887766542
Q ss_pred CCCCCCeEEEEc---------CCc--hHHHHHHHhcCCeEE-EEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh
Q 011810 297 LHFSPRKVTVST---------SGL--VPQLKQFLNESNCAL-AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364 (477)
Q Consensus 297 l~i~~r~ItvsT---------NGi--~p~i~~L~~~~d~~L-aISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~ 364 (477)
+. .++++. .|. .+.+++|.+.+-..+ .+-+.+.+++.++.+.| ++.+.++-++.++. +.+
T Consensus 122 i~----~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~p--k~~t~~~~i~~i~~--a~~ 193 (348)
T PRK08445 122 IT----IHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAP--KKLDSDRWLEVHRQ--AHL 193 (348)
T ss_pred cE----EEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCC--CCCCHHHHHHHHHH--HHH
Confidence 32 122211 233 256778887773333 35788889999998876 34566777888886 567
Q ss_pred cCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011810 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398 (477)
Q Consensus 365 ~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 398 (477)
.|.++.- .+|=|.-++.++..+.+.+++++..
T Consensus 194 ~Gi~~~s--g~i~G~~Et~edr~~~l~~lreLq~ 225 (348)
T PRK08445 194 IGMKSTA--TMMFGTVENDEEIIEHWERIRDLQD 225 (348)
T ss_pred cCCeeee--EEEecCCCCHHHHHHHHHHHHHHHH
Confidence 7777654 4455666889999999999988753
No 130
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.72 E-value=3.8e-06 Score=90.34 Aligned_cols=204 Identities=19% Similarity=0.244 Sum_probs=140.0
Q ss_pred cCccCCCCCCCCCCC-CC-C-CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc--ccCCHHHHHHHHHHHHHh--
Q 011810 222 QVGCAMNCQFCYTGR-MG-L-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE--PLHNVENVIKAANIMVHE-- 294 (477)
Q Consensus 222 q~GCnl~C~FC~tg~-~g-~-~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE--PLln~d~vi~~i~~l~~~-- 294 (477)
+..|.-+|.||.-.. .+ . ...++.+||++++..+.+ .+++.+.+.+ || |-...+.+.++++.+.+.
T Consensus 91 SN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~------~G~~~i~Lvs-Ge~p~~~~~eyi~e~i~~I~~~~~ 163 (469)
T PRK09613 91 SNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALED------MGHKRLALVA-GEDPPNCDIEYILESIKTIYSTKH 163 (469)
T ss_pred cCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHH------CCCCEEEEEe-CCCCCCCCHHHHHHHHHHHHHhcc
Confidence 589999999998543 22 2 246899999999987643 3677777776 65 333477888888877643
Q ss_pred -cCCCCCCCeEEEEcCCc--hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EE
Q 011810 295 -QGLHFSPRKVTVSTSGL--VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VL 370 (477)
Q Consensus 295 -~Gl~i~~r~ItvsTNGi--~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~ 370 (477)
.|. -++++|+- |. .+.+++|.+.+-..+.+-..+.+.+++.++.|...+.+++.-+++++. +.+.|.+ |.
T Consensus 164 ~~g~---i~~v~ini-g~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~r--A~~aGi~~Vg 237 (469)
T PRK09613 164 GNGE---IRRVNVNI-APTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDR--AMEAGIDDVG 237 (469)
T ss_pred ccCc---ceeeEEEe-ecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHH--HHHcCCCeeC
Confidence 221 12466652 43 368999999884455578888899999999987677889999999997 5677876 66
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcC------CCe-EEEEeecCCCCCCC-C---CCcHHHHHHHHHHHH----hCCCeE
Q 011810 371 FEYVMLAGVNDSFDDAKRLIGLVQGI------PCK-INLISFNPHCGSQF-T---PTTDEKMIEFRNILA----GAGCTV 435 (477)
Q Consensus 371 ieyvLI~GvNDs~ed~~~La~ll~~l------~~~-VnLipynp~~~~~~-~---~ps~e~l~~f~~~L~----~~Gi~v 435 (477)
+=. |=|+.++.+|.-.++..++.+ +++ |.+-.++|.+++++ . +.+++++.++.-.++ ..|+.+
T Consensus 238 ~G~--L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~l 315 (469)
T PRK09613 238 IGV--LFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMIL 315 (469)
T ss_pred eEE--EEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCcee
Confidence 543 447888888877777666655 222 44444788887755 2 246666666655543 356666
Q ss_pred EecCC
Q 011810 436 FLRLS 440 (477)
Q Consensus 436 ~vR~s 440 (477)
+-|.+
T Consensus 316 StRE~ 320 (469)
T PRK09613 316 STRES 320 (469)
T ss_pred ecCCC
Confidence 66654
No 131
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.71 E-value=5e-07 Score=92.80 Aligned_cols=188 Identities=15% Similarity=0.215 Sum_probs=116.6
Q ss_pred ecCccCCCCCCCCCCCC-CC--CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCCH---------------
Q 011810 221 SQVGCAMNCQFCYTGRM-GL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNV--------------- 281 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~-g~--~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln~--------------- 281 (477)
.+.+|+.+|.||.-... +. ...++++||++++..+.+ .+++.|.+.| |+ |-..+
T Consensus 10 ~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~------~G~~ei~l~~-G~~p~~~~~~~~~~l~~~~~~~~ 82 (322)
T TIGR03550 10 LTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAA------AGCTEALFTF-GEKPEERYPEAREWLAEMGYDST 82 (322)
T ss_pred cccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHH------CCCCEEEEec-CCCccccHHHHHHHHHhcCCccH
Confidence 48999999999996543 22 236899999999987654 3677788988 77 43321
Q ss_pred -HHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcC-CCCCCcHHHHHHHHH
Q 011810 282 -ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMP-INRKYKLGLLIETLR 358 (477)
Q Consensus 282 -d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~p-i~~~~~le~ile~l~ 358 (477)
+.+.++++.+.++.++. ..++...+. +.+..|.+.+ ..+.+++.+.++..+..+.. ....-..++.++.++
T Consensus 83 ~~~~~~~~~~i~~e~~~~-----~~~~~g~lt~e~l~~Lk~aG-~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~ 156 (322)
T TIGR03550 83 LEYLRELCELALEETGLL-----PHTNPGVMSRDELARLKPVN-ASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETIE 156 (322)
T ss_pred HHHHHHHHHHHHHhcCCc-----cccCCCCCCHHHHHHHHhhC-CCCCcchhhhccccccccccCCCCCCCHHHHHHHHH
Confidence 45666666655554553 444444443 4567777655 12345566665553222211 111112456788888
Q ss_pred HHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-----C-eEEEEeecCCCCCC---CCCCcHHHHHHHH
Q 011810 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP-----C-KINLISFNPHCGSQ---FTPTTDEKMIEFR 425 (477)
Q Consensus 359 ~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~-----~-~VnLipynp~~~~~---~~~ps~e~l~~f~ 425 (477)
. ..+.|.++.. .+|=|..+++++..+.+.+++.+. + .+-+.+|.|.++++ .++++.++..+..
T Consensus 157 ~--a~~~Gi~~~s--~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~i 228 (322)
T TIGR03550 157 D--AGRLKIPFTT--GILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTV 228 (322)
T ss_pred H--HHHcCCCccc--eeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHH
Confidence 6 4567766544 445577899999999999998774 2 34456688886654 3455666555543
No 132
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.68 E-value=4.4e-07 Score=94.42 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=112.5
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-H-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCC
Q 011810 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-P-QLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345 (477)
Q Consensus 268 nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-p-~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~ 345 (477)
.+..+|.|+++-++ .+.+..+.. +..+-.-..|-..++.||.. + ...++++.+-.-|.+|+|+++++.|+++|.-.
T Consensus 81 ~~~~~~~~d~~c~p-~le~~~~r~-~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~ 158 (414)
T COG1625 81 GAKQCGNGDTFCYP-DLEPRGRRA-RLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNP 158 (414)
T ss_pred ceeecCCCCcccCc-chhhhhhHH-HhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCC
Confidence 67788878877765 456666543 33331112234567778863 3 56778888756678999999999999999643
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC-----CCCCCcHH
Q 011810 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS-----QFTPTTDE 419 (477)
Q Consensus 346 ~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~-----~~~~ps~e 419 (477)
.-+++++.++. + ......+....|++||+||. +++.+..+-|..++. .+.++.+-|.+-. ..++++++
T Consensus 159 ---~A~~~le~L~~-f-~~~~~~v~a~iVl~PGvNdg-e~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~~~i~~~t~~ 232 (414)
T COG1625 159 ---NAEQLLELLRR-F-AERCIEVHAQIVLCPGVNDG-EELEKTLEDLEEWGAHEVILMRVVPVGLTRYNRPGIRPPTPH 232 (414)
T ss_pred ---cHHHHHHHHHH-H-HHhhhheeeEEEEcCCcCcH-HHHHHHHHHHHHhCcCceeEEEeecceeeecCCCCCCCCCHH
Confidence 24679999997 3 55666899999999999986 678888888887764 3455534444322 35678888
Q ss_pred HHHHHHHHHH----hCC-CeEEe
Q 011810 420 KMIEFRNILA----GAG-CTVFL 437 (477)
Q Consensus 420 ~l~~f~~~L~----~~G-i~v~v 437 (477)
++++|+++.+ +.| +.|+-
T Consensus 233 ~l~~~k~i~re~~~E~~~~~V~g 255 (414)
T COG1625 233 ELEEFKEIVREFDRELGSIRVTG 255 (414)
T ss_pred HHHHHHHHHHHHHHhcCceEEeC
Confidence 9998887654 567 66653
No 133
>PRK07360 FO synthase subunit 2; Reviewed
Probab=98.64 E-value=2.1e-06 Score=89.86 Aligned_cols=167 Identities=23% Similarity=0.290 Sum_probs=113.5
Q ss_pred cCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC-cccCC-HHHHHHHHHHHHHhc-
Q 011810 222 QVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPLHN-VENVIKAANIMVHEQ- 295 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG-EPLln-~d~vi~~i~~l~~~~- 295 (477)
+..|+.+|.||+..... ....++.+||++.+..+.+ .+++.|.++| | .|... .+.+.++++.+++..
T Consensus 67 Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~------~G~~~i~l~~-G~~p~~~~~e~~~~~i~~ik~~~~ 139 (371)
T PRK07360 67 TNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVK------RGATEVCIQG-GLHPAADSLEFYLEILEAIKEEFP 139 (371)
T ss_pred chhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHh------CCCCEEEEcc-CCCCCCCcHHHHHHHHHHHHHhCC
Confidence 68999999999965421 1235899999999887654 3788898998 7 67776 788899999876542
Q ss_pred CCCCCCCeEEEE----------cCCch--HHHHHHHhcCCeEE-EEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHH
Q 011810 296 GLHFSPRKVTVS----------TSGLV--PQLKQFLNESNCAL-AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362 (477)
Q Consensus 296 Gl~i~~r~Itvs----------TNGi~--p~i~~L~~~~d~~L-aISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~ 362 (477)
++. +... +.|.. +.+++|.+.+-..+ ..+-...+++.|+++.|. +.+.++-++.++. +
T Consensus 140 ~i~-----i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~--~~s~~~~l~~i~~--a 210 (371)
T PRK07360 140 DIH-----LHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPE--KIKTAEWIEIVKT--A 210 (371)
T ss_pred Ccc-----eeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCC--CCCHHHHHHHHHH--H
Confidence 333 4432 45764 46888888773222 122223356677777764 3456777888885 5
Q ss_pred hhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC----eEEEEeec
Q 011810 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC----KINLISFN 406 (477)
Q Consensus 363 ~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~----~VnLipyn 406 (477)
.+.|.++. ..+|=|...+.+|..+...+++++.. ...+||+|
T Consensus 211 ~~~Gl~~~--sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~ 256 (371)
T PRK07360 211 HKLGLPTT--STMMYGHVETPEHRIDHLLILREIQQETGGITEFVPLP 256 (371)
T ss_pred HHcCCCce--eeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEecc
Confidence 67776664 44556777899999999999998753 23446654
No 134
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=98.59 E-value=1.1e-05 Score=86.19 Aligned_cols=190 Identities=10% Similarity=0.128 Sum_probs=115.0
Q ss_pred cCCCCCCCCCCCCCCCcCC---CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCC
Q 011810 225 CAMNCQFCYTGRMGLKRHL---TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSP 301 (477)
Q Consensus 225 Cnl~C~FC~tg~~g~~r~L---t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~ 301 (477)
|+..|.||.-......... -.+.+..++....+ .+..+..|.|-| |-|++..+.+.+.++.+.+..++
T Consensus 62 C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~----~~~~~~siy~GG-GTPs~l~~~L~~ll~~i~~~f~i---- 132 (433)
T PRK08629 62 CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKE----LGYDFESMYVGG-GTTTILEDELAKTLELAKKLFSI---- 132 (433)
T ss_pred ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHh----cCCceEEEEECC-CccccCHHHHHHHHHHHHHhCCC----
Confidence 9999999996643222111 13444555443322 124577776666 99999877788878766554443
Q ss_pred CeEEEEcCC--chH-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCC
Q 011810 302 RKVTVSTSG--LVP-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG 378 (477)
Q Consensus 302 r~ItvsTNG--i~p-~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~G 378 (477)
..+++++|= +.+ .++.+... --.|.+-+.+.+++..+.+-..++..+.+++++.++. .......+. +-+|-|
T Consensus 133 ~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~--~~~~~~~v~--~DlI~G 207 (433)
T PRK08629 133 KEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMK--AKGLFPIIN--VDLIFN 207 (433)
T ss_pred ceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHH--HhccCCeEE--EEEEcc
Confidence 368888873 334 44444443 3357789999999987765443332344566666664 222222333 334433
Q ss_pred C-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC------CCCCcHHHHHHHHHHH
Q 011810 379 V-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ------FTPTTDEKMIEFRNIL 428 (477)
Q Consensus 379 v-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~------~~~ps~e~l~~f~~~L 428 (477)
+ +++.+++.+-.+++..+++ +|.+.|+...+++. ...|+.+...++.+..
T Consensus 208 lPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~ 265 (433)
T PRK08629 208 FPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQII 265 (433)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHH
Confidence 2 3678999999999998864 89999987655432 3346665555555443
No 135
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.57 E-value=6.2e-06 Score=87.25 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=83.0
Q ss_pred cCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHH
Q 011810 308 TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAK 387 (477)
Q Consensus 308 TNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~ 387 (477)
||=....++++++..---|.||+|+.+++.|.++++.. ..+++++.+++ ..+.+..+..+.|++||+||. ++++
T Consensus 124 TNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~---~a~~il~~l~~--l~~~~I~~h~qiVlcPGiNDg-~~L~ 197 (433)
T TIGR03279 124 TNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNP---RAGLILEQLKW--FQERRLQLHAQVVVCPGINDG-KHLE 197 (433)
T ss_pred cCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCC---CHHHHHHHHHH--HHHcCCeEEEEEEEcCCcCCH-HHHH
Confidence 66666677777776533356999999999999999743 35899999997 356788999999999999997 5677
Q ss_pred HHHHHHhcC----CCeEEEEeecCCCCC-------CCCCCcHHH-------HHHHHHHH-HhCCCe
Q 011810 388 RLIGLVQGI----PCKINLISFNPHCGS-------QFTPTTDEK-------MIEFRNIL-AGAGCT 434 (477)
Q Consensus 388 ~La~ll~~l----~~~VnLipynp~~~~-------~~~~ps~e~-------l~~f~~~L-~~~Gi~ 434 (477)
+..+.|..+ ...|.=+.+-|.+-+ +.++.++++ ++.+++.+ ++.|-.
T Consensus 198 ~Ti~dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ie~~q~~~~~~~g~~ 263 (433)
T TIGR03279 198 RTLRDLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQTQFQRQLGSR 263 (433)
T ss_pred HHHHHHHhhcccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 777777765 333433444444322 235556544 44455333 456655
No 136
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.56 E-value=4.5e-06 Score=84.90 Aligned_cols=166 Identities=17% Similarity=0.301 Sum_probs=113.3
Q ss_pred EEecCccCCCCCCCCCCCCCC-----CcCCCHHH-HHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHH---HHHHHHH
Q 011810 219 VSSQVGCAMNCQFCYTGRMGL-----KRHLTAAE-IVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE---NVIKAAN 289 (477)
Q Consensus 219 VSsq~GCnl~C~FC~tg~~g~-----~r~Lt~eE-Iv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d---~vi~~i~ 289 (477)
++.-.||..+|.||+...+.. ...+.+++ +++.+... +.....+...|.++.+-+|..-.+ .+.+.+.
T Consensus 33 inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~e---l~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~il 109 (297)
T COG1533 33 LNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERE---LRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKIL 109 (297)
T ss_pred cCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHH---HhhccCCceEEEEecCCCCCCcchHHHHHHHHHH
Confidence 334699999999999654322 12345566 66666543 221124566788888899998632 3444444
Q ss_pred HHHHhcCCCCCCCeEEEEcCCch--HHH---HHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh
Q 011810 290 IMVHEQGLHFSPRKVTVSTSGLV--PQL---KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364 (477)
Q Consensus 290 ~l~~~~Gl~i~~r~ItvsTNGi~--p~i---~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~ 364 (477)
.+....|.. +.|.|-+.+ ..+ .++.....+.+++|+...+++.++.+=|- .-+.++=++++++ +.+
T Consensus 110 ei~~~~~~~-----v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~--apsp~~Ri~al~~--l~e 180 (297)
T COG1533 110 EILLKYGFP-----VSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPR--APSPEERLEALKE--LSE 180 (297)
T ss_pred HHHHHcCCc-----EEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCC--CcCHHHHHHHHHH--HHH
Confidence 455667775 999997652 334 44445556788999999988888877774 3467888999998 478
Q ss_pred cCCeEEEEE-EEeCCCCCCHHHHHHHHHHHhcCCC
Q 011810 365 NNYKVLFEY-VMLAGVNDSFDDAKRLIGLVQGIPC 398 (477)
Q Consensus 365 ~~~~V~iey-vLI~GvNDs~ed~~~La~ll~~l~~ 398 (477)
.|.++++.+ .+||++|| ++++++..-+...++
T Consensus 181 aGi~~~v~v~PIiP~~~d--~e~e~~l~~~~~ag~ 213 (297)
T COG1533 181 AGIPVGLFVAPIIPGLND--EELERILEAAAEAGA 213 (297)
T ss_pred CCCeEEEEEecccCCCCh--HHHHHHHHHHHHcCC
Confidence 899988765 58999998 778887776655543
No 137
>PRK00955 hypothetical protein; Provisional
Probab=98.56 E-value=3.2e-06 Score=93.20 Aligned_cols=184 Identities=17% Similarity=0.294 Sum_probs=112.0
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CC-CcCCCHHHHHHHHHHHHHHhcccCCCeeEE---------EEecCC-------
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GL-KRHLTAAEIVEQAVFARRLLSSEVGSITNV---------VFMGMG------- 275 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~-~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nI---------vF~GmG------- 275 (477)
.....|.++.||+.+|.||..+.. |. .+..+.++|++++....+. .+.+.+ .+.|+.
T Consensus 291 ~i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~-----~gfkg~I~DlgGptan~Yg~~c~~~~~~ 365 (620)
T PRK00955 291 EVKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEM-----PDFKGYIHDVGGPTANFRKMACKKQLKC 365 (620)
T ss_pred eEEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhc-----cCCeEEEEeCCCCCcccccccccccccc
Confidence 345667779999999999997754 33 3788999999999876532 112221 222210
Q ss_pred -----------cccC----CHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCc-----h-----HHHHHHHhcC-CeEEEEe
Q 011810 276 -----------EPLH----NVENVIKAANIMVHEQGLHFSPRKVTVSTSGL-----V-----PQLKQFLNES-NCALAVS 329 (477)
Q Consensus 276 -----------EPLl----n~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi-----~-----p~i~~L~~~~-d~~LaIS 329 (477)
+|-- +...+.++++.+.+-.|+. ++.|++ |+ . +.+++|++.. .-.|-|.
T Consensus 366 ~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvk----rv~isS-GIR~D~l~~~~~~~~l~eL~~~~vsg~L~Ia 440 (620)
T PRK00955 366 GACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVK----KVFIRS-GIRYDYLLHDKNDEFFEELCEHHVSGQLKVA 440 (620)
T ss_pred ccccccccccCccccccCcChHHHHHHHHHHhccCCce----EEEeec-ceeccccccCCcHHHHHHHHHHhcCCCceeC
Confidence 1111 1235777777765545553 455544 31 1 1466777652 2246689
Q ss_pred eCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE-EEEe--CCCCCCHHHHHHHHHHHhcCCC-eEEEEee
Q 011810 330 LNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE-YVML--AGVNDSFDDAKRLIGLVQGIPC-KINLISF 405 (477)
Q Consensus 330 L~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie-yvLI--~GvNDs~ed~~~La~ll~~l~~-~VnLipy 405 (477)
+.+.+++.-+.... .....++++++.+++ +..+.+.+..+. |+++ || +++++++++++|+++++. .+++.+|
T Consensus 441 pESgSd~VLk~M~K-~~~~~~~~f~~~~~~-i~~~~G~~~~I~~yfIvGfPG--ETeEDf~et~eflkel~~~~~qV~~f 516 (620)
T PRK00955 441 PEHISDRVLKLMGK-PSREVYDKFVKKFDR-INKKLGKKQYLVPYLMSSHPG--STLEDAIELAEYTKDLGYQPEQVQDF 516 (620)
T ss_pred cCCCChHHHHHhCC-CCHHHHHHHHHHHHH-hhhhcCCCccEEEEEEEECCC--CCHHHHHHHHHHHHHcCCCcceeeee
Confidence 99999887764322 111123455555555 344555443333 3343 55 889999999999999874 6778888
Q ss_pred cCCCCC
Q 011810 406 NPHCGS 411 (477)
Q Consensus 406 np~~~~ 411 (477)
.|.+++
T Consensus 517 TP~PGT 522 (620)
T PRK00955 517 YPTPGT 522 (620)
T ss_pred ecCCCc
Confidence 888764
No 138
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.51 E-value=4e-06 Score=89.07 Aligned_cols=189 Identities=16% Similarity=0.296 Sum_probs=112.7
Q ss_pred eEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCC-CeeEEEEecCCcccCCHHHHHHHHHHHHHh
Q 011810 216 TVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVG-SITNVVFMGMGEPLHNVENVIKAANIMVHE 294 (477)
Q Consensus 216 tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~-~v~nIvF~GmGEPLln~d~vi~~i~~l~~~ 294 (477)
...|.++-||+.+|.||..+.....|..+.+.+++++....+....... -+.++.+.| +..+.+ +...+.+.....+
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~-~~~~~~-~~~~~~l~~~~~~ 276 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYG-SPALND-EKRFELLSLELIE 276 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhcCcccccceeecC-Cccccc-hhhcccchHHHHH
Confidence 5777778999999999998865334667888888888765443222111 123343433 332222 2333333211122
Q ss_pred cCCC-CCCCeEEEE---cCCch-HHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHH-HHHHHHHhhcCC
Q 011810 295 QGLH-FSPRKVTVS---TSGLV-PQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIE-TLREELHFKNNY 367 (477)
Q Consensus 295 ~Gl~-i~~r~Itvs---TNGi~-p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile-~l~~~l~~~~~~ 367 (477)
.++. ....++++. ++=.. +.+.+++... ...+.+-+.+.+++..+.+. +..+.+++++ +++. ..+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~---k~~~~~~~~~~a~~~--~~~~~~ 351 (490)
T COG1032 277 RGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN---KGITTEEVLEEAVKI--AKEHGL 351 (490)
T ss_pred HhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh---CCCChHHHHHHHHHH--HHhCCc
Confidence 2221 001123332 11122 4455555554 56778999999999988755 4456788885 7774 566777
Q ss_pred eEEEEEEE-eCCCCCCHHHHHHH---HHHHhcCCCe--EEEEeecCCCCCCC
Q 011810 368 KVLFEYVM-LAGVNDSFDDAKRL---IGLVQGIPCK--INLISFNPHCGSQF 413 (477)
Q Consensus 368 ~V~ieyvL-I~GvNDs~ed~~~L---a~ll~~l~~~--VnLipynp~~~~~~ 413 (477)
++.+-+++ +|| ++.+++++. .++++.++.. +...+|.|.+++.+
T Consensus 352 ~~~~~~i~G~pg--et~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~ 401 (490)
T COG1032 352 RVKLYFIVGLPG--ETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPL 401 (490)
T ss_pred eeeEEEEEcCCC--CCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCch
Confidence 66666555 466 456666665 7777777654 88888999887654
No 139
>PRK08444 hypothetical protein; Provisional
Probab=98.51 E-value=8.8e-06 Score=84.74 Aligned_cols=185 Identities=16% Similarity=0.128 Sum_probs=118.7
Q ss_pred EecCccCCCCCCCCCCCC---CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhc-
Q 011810 220 SSQVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ- 295 (477)
Q Consensus 220 Ssq~GCnl~C~FC~tg~~---g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~- 295 (477)
..+..|..+|.||+-... .....++.+||++.+..+.+ .+++.|.+.|.+-|...++.+.++++.+++..
T Consensus 54 n~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~------~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p 127 (353)
T PRK08444 54 NPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK------RGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYP 127 (353)
T ss_pred ccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH------CCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCC
Confidence 337899999999996531 12245899999999987654 47888888885677777888999999887653
Q ss_pred CCCCCCCeEEEE----------cCCc-h-HHHHHHHhcCCeEEEEeeCC-----CCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011810 296 GLHFSPRKVTVS----------TSGL-V-PQLKQFLNESNCALAVSLNA-----TTDEVRNWIMPINRKYKLGLLIETLR 358 (477)
Q Consensus 296 Gl~i~~r~Itvs----------TNGi-~-p~i~~L~~~~d~~LaISL~a-----~~~e~r~~I~pi~~~~~le~ile~l~ 358 (477)
+++ +..- ..|. . +.+.+|.+.+-. ++++ .+++.|.+|.|.. .+-++.++.++
T Consensus 128 ~i~-----i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~----~~~g~~aEi~~~~vr~~I~p~k--~~~~~~~~i~~ 196 (353)
T PRK08444 128 NLH-----VKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVD----SMPGGGAEIFDEEVRKKICKGK--VSSERWLEIHK 196 (353)
T ss_pred Cce-----EeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcc----cCCCCCchhcCHHHHhhhCCCC--CCHHHHHHHHH
Confidence 343 4441 2343 3 456777776622 3333 3778889998753 34466666656
Q ss_pred HHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC---e-EEEEe--ecCCCC--CCCCCCcHHHHHHHH
Q 011810 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC---K-INLIS--FNPHCG--SQFTPTTDEKMIEFR 425 (477)
Q Consensus 359 ~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~---~-VnLip--ynp~~~--~~~~~ps~e~l~~f~ 425 (477)
. +.+.|.+++ ..+|=|.-++.+|.-+....++++.. . -.+|| |.|... ...++++.++..+..
T Consensus 197 ~--a~~~Gi~~~--sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~i 267 (353)
T PRK08444 197 Y--WHKKGKMSN--ATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTI 267 (353)
T ss_pred H--HHHcCCCcc--ceeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHH
Confidence 4 455676664 34555666888888888888887753 1 22344 333221 124456666555444
No 140
>PRK01254 hypothetical protein; Provisional
Probab=98.41 E-value=2.1e-05 Score=86.90 Aligned_cols=184 Identities=15% Similarity=0.224 Sum_probs=115.6
Q ss_pred eeEEEEecCccCCCCCCCCCCCC-CC-CcCCCHHHHHHHHHHHHHHhcccCCCeeEEE---------EecC--Cc-----
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM-GL-KRHLTAAEIVEQAVFARRLLSSEVGSITNVV---------FMGM--GE----- 276 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~-g~-~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIv---------F~Gm--GE----- 276 (477)
....|.+..||+.+|.||..+.. |. .+..+.++|++++....+.. .+...+. +.|+ ..
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~----pGfKgii~DLgGptaN~YG~~c~d~~~~~ 447 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKV----PGFTGVISDLGGPTANMYRLRCKSPRAEQ 447 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCcccccccccccccccc
Confidence 44667778999999999997743 33 46789999999998765321 2344443 4443 11
Q ss_pred -------------c-c-CCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCc----h---H-HHHHHHhcC-CeEEEEeeCC
Q 011810 277 -------------P-L-HNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL----V---P-QLKQFLNES-NCALAVSLNA 332 (477)
Q Consensus 277 -------------P-L-ln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi----~---p-~i~~L~~~~-d~~LaISL~a 332 (477)
+ | .+...+.++++.+.+-.|+. +|.|.+ |+ . + -++++.+.. .-.|-|-+.+
T Consensus 448 ~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVK----kVrI~S-giR~Dl~l~d~elIeel~~~hV~g~LkVppEH 522 (707)
T PRK01254 448 TCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIK----KILIAS-GVRYDLAVEDPRYVKELVTHHVGGYLKIAPEH 522 (707)
T ss_pred ccccccccCcccccccCCCHHHHHHHHHHHHhCCCce----EEEEEc-CCCccccccCHHHHHHHHHhCCcccccccccc
Confidence 1 1 12235778888776545664 455544 32 1 3 345555533 2245577888
Q ss_pred CCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCCeE-EEEeecCCC
Q 011810 333 TTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG-VNDSFDDAKRLIGLVQGIPCKI-NLISFNPHC 409 (477)
Q Consensus 333 ~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~G-vNDs~ed~~~La~ll~~l~~~V-nLipynp~~ 409 (477)
.+++.-+ .|.....+.+++..+.+++ +.++.+..+.+...+|-| -+++++|+++|++|++.++..+ .+.-|.|.+
T Consensus 523 ~Sd~VLk-~M~Kp~~~~~e~F~e~f~r-irk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP 599 (707)
T PRK01254 523 TEEGPLS-KMMKPGMGSYDRFKELFDK-YSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSP 599 (707)
T ss_pred CCHHHHH-HhCCCCcccHHHHHHHHHH-HHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCC
Confidence 8887654 4544334677888888887 566667666665555544 4588999999999999886532 223355665
No 141
>PRK05927 hypothetical protein; Provisional
Probab=98.37 E-value=1.9e-05 Score=82.26 Aligned_cols=193 Identities=16% Similarity=0.187 Sum_probs=119.0
Q ss_pred cCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcc-cCCHHHHHHHHHHHHHhc-C
Q 011810 222 QVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP-LHNVENVIKAANIMVHEQ-G 296 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEP-Lln~d~vi~~i~~l~~~~-G 296 (477)
+..|+.+|.||+..... ....++.+||++.+..+.+ .+++.|.|.| |+. -.-.+.+.++++.+++.. +
T Consensus 52 Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~------~G~~~i~i~g-G~~p~~~~e~~~~~i~~ik~~~p~ 124 (350)
T PRK05927 52 TNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVS------AGVKTVLLQG-GVHPQLGIDYLEELVRITVKEFPS 124 (350)
T ss_pred chhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHH------CCCCEEEEeC-CCCCCCCHHHHHHHHHHHHHHCCC
Confidence 68899999999965421 1236899999999987654 3678888998 884 455778888888877654 3
Q ss_pred CCCCCC-eEE----EEcCCch--HHHHHHHhcCCeEE-EEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe
Q 011810 297 LHFSPR-KVT----VSTSGLV--PQLKQFLNESNCAL-AVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368 (477)
Q Consensus 297 l~i~~r-~It----vsTNGi~--p~i~~L~~~~d~~L-aISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~ 368 (477)
+.+... .+. -.+.|+. +.+.+|.+.+-..+ ..-+...+++.|+.+.|. +++.++=++.++. +.+.|.+
T Consensus 125 l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~--k~~~~~rl~~i~~--A~~lGi~ 200 (350)
T PRK05927 125 LHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPK--KMGPDGWIQFHKL--AHRLGFR 200 (350)
T ss_pred CcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCC--CCCHHHHHHHHHH--HHHcCCC
Confidence 431000 011 1235764 56778877762211 113455677778777763 4455777888885 4666666
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCC----CeEEEEeecCCC-CCCC----C-CCcHHHHHHHHHH
Q 011810 369 VLFEYVMLAGVNDSFDDAKRLIGLVQGIP----CKINLISFNPHC-GSQF----T-PTTDEKMIEFRNI 427 (477)
Q Consensus 369 V~ieyvLI~GvNDs~ed~~~La~ll~~l~----~~VnLipynp~~-~~~~----~-~ps~e~l~~f~~~ 427 (477)
++- .+|=|.-++.+|.-+....++++. ....+||+.+.+ +.++ . +++.++..+...+
T Consensus 201 ~~s--g~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv 267 (350)
T PRK05927 201 STA--TMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAV 267 (350)
T ss_pred cCc--eeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHH
Confidence 543 455566678888777777777663 234556653332 2221 1 4666665554433
No 142
>PTZ00413 lipoate synthase; Provisional
Probab=98.35 E-value=0.00012 Score=76.35 Aligned_cols=197 Identities=10% Similarity=0.162 Sum_probs=129.8
Q ss_pred cCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec-CCcccCC--HHHHHHHHHHHHHhc-CC
Q 011810 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG-MGEPLHN--VENVIKAANIMVHEQ-GL 297 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G-mGEPLln--~d~vi~~i~~l~~~~-Gl 297 (477)
...|.-+|.||+.........++++|+.+....+.+ .+++.+|++. .++.+-. .+.+.+.++.+.+.. ++
T Consensus 156 G~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~------~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~ 229 (398)
T PTZ00413 156 GDHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAE------MGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPEL 229 (398)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------cCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCC
Confidence 478999999999765332466899999998887654 3555666655 2233433 356777777665532 44
Q ss_pred CCCCCeEEEEc---CCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhc-CCeEEEEE
Q 011810 298 HFSPRKVTVST---SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN-NYKVLFEY 373 (477)
Q Consensus 298 ~i~~r~ItvsT---NGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~-~~~V~iey 373 (477)
. |.+++ -|..+.+++|.+.+...++--|.. .+..+.++... ..++++-++.|+. .++. ...+.+-.
T Consensus 230 ~-----IevligDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~--~atYe~sLe~Lr~--AKe~f~~gi~tcS 299 (398)
T PTZ00413 230 L-----LEALVGDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDR--RASYRQSLKVLEH--VKEFTNGAMLTKS 299 (398)
T ss_pred e-----EEEcCCccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccC--cCCHHHHHHHHHH--HHHHhcCCceEee
Confidence 3 66665 344568888988885555566666 34566666521 2468999999986 3433 33444444
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEEEE-ee-cCCCCC-C-CCCCcHHHHHHHHHHHHhCCCe
Q 011810 374 VMLAGVNDSFDDAKRLIGLVQGIPCKINLI-SF-NPHCGS-Q-FTPTTDEKMIEFRNILAGAGCT 434 (477)
Q Consensus 374 vLI~GvNDs~ed~~~La~ll~~l~~~VnLi-py-np~~~~-~-~~~ps~e~l~~f~~~L~~~Gi~ 434 (477)
-+|=|+.++.+++.+++..++.+++.+-.+ .| .|.... + .+-.++++.+++++...+.|+.
T Consensus 300 GiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~ 364 (398)
T PTZ00413 300 SIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFL 364 (398)
T ss_pred eeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCc
Confidence 456678899999999999999987644322 32 455322 1 2335578899999999999986
No 143
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.22 E-value=0.00012 Score=84.08 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=110.3
Q ss_pred ecCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCCHHHHHHHHHHHHHhc-
Q 011810 221 SQVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHEQ- 295 (477)
Q Consensus 221 sq~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln~d~vi~~i~~l~~~~- 295 (477)
.+..|..+|.||+-.+.. ....++.+||++++..+.+ .+++.|.+.| |+ |-+..+.+.++++.+++..
T Consensus 532 ~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~------~G~tev~i~g-G~~p~~~~~~y~~lir~IK~~~p 604 (843)
T PRK09234 532 FTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWV------AGATEVCMQG-GIHPELPGTGYADLVRAVKARVP 604 (843)
T ss_pred cCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCCcCHHHHHHHHHHHHHhCC
Confidence 479999999999965431 2346899999999988754 4788898988 76 5566778888888776553
Q ss_pred CCCCCCCeEEEE----------cCCch--HHHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHH
Q 011810 296 GLHFSPRKVTVS----------TSGLV--PQLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREELH 362 (477)
Q Consensus 296 Gl~i~~r~Itvs----------TNGi~--p~i~~L~~~~d~~La-ISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~ 362 (477)
+++ +... +.|+. +.+++|.+.+-..+- -+=.-.+++.|..+.|. +.+.++-++.++. +
T Consensus 605 ~i~-----i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~--k~~~~~wle~i~~--A 675 (843)
T PRK09234 605 SMH-----VHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKG--KLPTAEWIEVVTT--A 675 (843)
T ss_pred Cee-----EEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCC--CCCHHHHHHHHHH--H
Confidence 343 4322 24553 456777777622210 11112356777777763 3455666777775 4
Q ss_pred hhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC----eEEEEee
Q 011810 363 FKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC----KINLISF 405 (477)
Q Consensus 363 ~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~----~VnLipy 405 (477)
.+.|.+++- .+|=|..++.+|..+...+++++.. ...+||+
T Consensus 676 h~lGi~~~s--tmm~G~~Et~edrv~hl~~LreLq~~tgGf~~fIPl 720 (843)
T PRK09234 676 HEVGLRSSS--TMMYGHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPL 720 (843)
T ss_pred HHcCCCccc--ceEEcCCCCHHHHHHHHHHHHhcCcccCCeeeeeec
Confidence 566766543 4455677999999999999998853 2445553
No 144
>PRK05926 hypothetical protein; Provisional
Probab=98.20 E-value=6.1e-05 Score=78.99 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=107.5
Q ss_pred cCccCCCCCCCCCCCC-C--CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc-CCHHHHHHHHHHHHHhc-C
Q 011810 222 QVGCAMNCQFCYTGRM-G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-HNVENVIKAANIMVHEQ-G 296 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~-g--~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL-ln~d~vi~~i~~l~~~~-G 296 (477)
+..|.-+|.||+..+. + ....++.+||++.+..+ + .+++.|.+.| |+.. +.++.+.++++.+.+.. +
T Consensus 75 Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~------~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~ 146 (370)
T PRK05926 75 TNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-P------SPITETHIVA-GCFPSCNLAYYEELFSKIKQNFPD 146 (370)
T ss_pred CCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-h------cCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCC
Confidence 7899999999995432 1 22458899999999875 2 2577888888 7753 45778888888776653 3
Q ss_pred CCCCCCeEEEEcC----------Cch--HHHHHHHhcCCeEEE-EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHh
Q 011810 297 LHFSPRKVTVSTS----------GLV--PQLKQFLNESNCALA-VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363 (477)
Q Consensus 297 l~i~~r~ItvsTN----------Gi~--p~i~~L~~~~d~~La-ISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~ 363 (477)
++ +...|- |.. +.+++|.+.+-..+. -.....+++.|+.+.| ++.+.++-++.++. ..
T Consensus 147 i~-----i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p--~~~t~~e~l~~i~~--a~ 217 (370)
T PRK05926 147 LH-----IKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAP--GRLSSQGFLEIHKT--AH 217 (370)
T ss_pred ee-----EEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCC--CCCCHHHHHHHHHH--HH
Confidence 43 443331 222 347777777622211 1233457888988887 34566888899986 57
Q ss_pred hcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011810 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398 (477)
Q Consensus 364 ~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 398 (477)
+.|.++.-- +|=|..++.+|.-+.+..++++..
T Consensus 218 ~~Gi~~~sg--mi~G~gEt~edrv~~l~~Lr~Lq~ 250 (370)
T PRK05926 218 SLGIPSNAT--MLCYHRETPEDIVTHMSKLRALQD 250 (370)
T ss_pred HcCCcccCc--eEEeCCCCHHHHHHHHHHHHhcCC
Confidence 778777655 555666889999888888988853
No 145
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.09 E-value=0.00057 Score=74.70 Aligned_cols=198 Identities=13% Similarity=0.226 Sum_probs=120.9
Q ss_pred CccCC-CCCCCCCCCC---------CC---------CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCH-H
Q 011810 223 VGCAM-NCQFCYTGRM---------GL---------KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV-E 282 (477)
Q Consensus 223 ~GCnl-~C~FC~tg~~---------g~---------~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~-d 282 (477)
.-||. +|.||..+-. |. .+.-+..++.+.+..... +.....+|. +.||| |-++.-. +
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~-~g~~~~kvE-~i~~G-GTft~l~~~ 152 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQ-IGHPVDKVE-LIIMG-GTFPARDLD 152 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHH-hCCCCceEE-EEEEC-CCcccCCHH
Confidence 56995 6999998632 11 123456666666665543 221112232 37999 9999852 3
Q ss_pred HHHHHHHHHHHhc-CCC--------------------CCCCeEEEEcCC--ch-HHHHHHHhcCCeEEEEeeCCCCHHHH
Q 011810 283 NVIKAANIMVHEQ-GLH--------------------FSPRKVTVSTSG--LV-PQLKQFLNESNCALAVSLNATTDEVR 338 (477)
Q Consensus 283 ~vi~~i~~l~~~~-Gl~--------------------i~~r~ItvsTNG--i~-p~i~~L~~~~d~~LaISL~a~~~e~r 338 (477)
....+++.+.+.. ++. .....++++|+= +. +.+..|.+.+-..+.+-+.+.+++..
T Consensus 153 y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL 232 (522)
T TIGR01211 153 YQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDIL 232 (522)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHH
Confidence 3334444322211 100 001247777853 33 56777777776778899999999987
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhc---CC-CeEEEEeecCCCCC--
Q 011810 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQG---IP-CKINLISFNPHCGS-- 411 (477)
Q Consensus 339 ~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~---l~-~~VnLipynp~~~~-- 411 (477)
+.+ ++.++.++++++++. .++.|..+.+ -+|.|. +++.++..+.++.+.. ++ ..|.+.|..+.+++
T Consensus 233 ~~i---nRght~~~v~~Ai~~--lr~~G~~v~~--~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L 305 (522)
T TIGR01211 233 ERT---KRGHTVRDVVEATRL--LRDAGLKVVY--HIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTEL 305 (522)
T ss_pred HHh---CCCCCHHHHHHHHHH--HHHcCCeEEE--EeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHH
Confidence 654 567889999999996 5677776544 455553 4667777666666542 44 47888887666553
Q ss_pred -------CCCCCcHHHHHHHHHHHHh
Q 011810 412 -------QFTPTTDEKMIEFRNILAG 430 (477)
Q Consensus 412 -------~~~~ps~e~l~~f~~~L~~ 430 (477)
.|++++.+++.++...+.+
T Consensus 306 ~~~~~~G~y~p~t~ee~v~l~~~~~~ 331 (522)
T TIGR01211 306 YELWKRGEYKPYTTEEAVELIVEIKR 331 (522)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 5778887776555544433
No 146
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=98.04 E-value=0.002 Score=68.73 Aligned_cols=202 Identities=16% Similarity=0.257 Sum_probs=123.3
Q ss_pred CccCCCCCCCCCCCCCCCcCCCHHHHHHHHHH----HHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011810 223 VGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVF----ARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 297 (477)
Q Consensus 223 ~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~----~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl 297 (477)
.=|.-.|.||.-........-..++.++.+.. ....... ...+..|.|-| |.|++ +.+.+...+..+.+..+
T Consensus 42 PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~-~~~v~ti~~GG-GTPslL~~~~l~~ll~~l~~~~~- 118 (416)
T COG0635 42 PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGG-QREVKTIYFGG-GTPSLLSPEQLERLLKALRELFN- 118 (416)
T ss_pred ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCC-CCeEEEEEECC-CccccCCHHHHHHHHHHHHHhcc-
Confidence 44999999999765433333344444444433 2222211 12477776655 99988 55666666666655553
Q ss_pred CCCC-CeEEEEcC-Cch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCC-eEEEE
Q 011810 298 HFSP-RKVTVSTS-GLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY-KVLFE 372 (477)
Q Consensus 298 ~i~~-r~ItvsTN-Gi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~-~V~ie 372 (477)
.+.. .-||+..| +.. +.++.+.+.+--.+.+-+-+.+++..+.+- +.++.+++.+++.. ..+.+. .|.+-
T Consensus 119 ~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lg---R~h~~~~~~~a~~~--~~~~g~~~in~D 193 (416)
T COG0635 119 DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALG---RIHDEEEAKEAVEL--ARKAGFTSINID 193 (416)
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhc---CCCCHHHHHHHHHH--HHHcCCCcEEEE
Confidence 2222 46999998 433 567777777755667788899999988664 44567888888886 344442 34443
Q ss_pred EEE-eCCCCCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCCC-----C---CCCcH----HHHHHHHHHHHhCCCe
Q 011810 373 YVM-LAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGSQ-----F---TPTTD----EKMIEFRNILAGAGCT 434 (477)
Q Consensus 373 yvL-I~GvNDs~ed~~~La~ll~~l~-~~VnLipynp~~~~~-----~---~~ps~----e~l~~f~~~L~~~Gi~ 434 (477)
.+. +|+ .+.+++.+-.+.+..++ .+|.+..|.-.++.. . ..|+. +..+...+.|.++|+.
T Consensus 194 LIyglP~--QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~ 267 (416)
T COG0635 194 LIYGLPG--QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYR 267 (416)
T ss_pred eecCCCC--CCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCc
Confidence 222 355 66788888777777775 477776654332221 1 13443 3455666888999984
No 147
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.01 E-value=0.00055 Score=66.39 Aligned_cols=191 Identities=15% Similarity=0.257 Sum_probs=113.5
Q ss_pred EEEEe-cCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCC--HHHHHHHHHHHH
Q 011810 217 VCVSS-QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHN--VENVIKAANIMV 292 (477)
Q Consensus 217 lCVSs-q~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln--~d~vi~~i~~l~ 292 (477)
.-||. ..-|.+||+.|......-.-..|.++++....++.+ .+...+.++| |- |=.. .+...+.++.+.
T Consensus 12 ~sISVTG~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~k------kGy~g~llSG-Gm~srg~VPl~kf~d~lK~lk 84 (275)
T COG1856 12 ISISVTGAYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEK------KGYEGCLLSG-GMDSRGKVPLWKFKDELKALK 84 (275)
T ss_pred ceEEEeccceEecChHHHHHHHHHhcccchHHHHHHHHHHHh------cCceeEEEeC-CcCCCCCccHHHHHHHHHHHH
Confidence 33443 456999999998754322223455778877776543 4778888999 53 2221 334566677777
Q ss_pred HhcCCCCCCCeEEEEcCCch-HH-HHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeE
Q 011810 293 HEQGLHFSPRKVTVSTSGLV-PQ-LKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKV 369 (477)
Q Consensus 293 ~~~Gl~i~~r~ItvsTNGi~-p~-i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V 369 (477)
+..|+. +.- -.|++ +. ++++.++. |+. .+++-+.++ .-+++.+.++ +.++.++.++. +.+.+.+|
T Consensus 85 e~~~l~-----ina-HvGfvdE~~~eklk~~~vdvv-sLDfvgDn~-vIk~vy~l~k--sv~dyl~~l~~--L~e~~irv 152 (275)
T COG1856 85 ERTGLL-----INA-HVGFVDESDLEKLKEELVDVV-SLDFVGDND-VIKRVYKLPK--SVEDYLRSLLL--LKENGIRV 152 (275)
T ss_pred HhhCeE-----EEE-EeeeccHHHHHHHHHhcCcEE-EEeecCChH-HHHHHHcCCc--cHHHHHHHHHH--HHHcCcee
Confidence 777874 333 34665 33 45555555 554 256656555 4455777753 57888888884 57888888
Q ss_pred EEEEEEe--CC-CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC---CCCCCcHHHHHHHHHHHHh
Q 011810 370 LFEYVML--AG-VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS---QFTPTTDEKMIEFRNILAG 430 (477)
Q Consensus 370 ~ieyvLI--~G-vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~---~~~~ps~e~l~~f~~~L~~ 430 (477)
....++= .| +. . +.++ .+.+.+.+. -+-|.-+.|.+|+ ..+||+.|+.-+..+..++
T Consensus 153 vpHitiGL~~gki~-~--e~ka-IdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~ 216 (275)
T COG1856 153 VPHITIGLDFGKIH-G--EFKA-IDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARK 216 (275)
T ss_pred ceeEEEEeccCccc-c--hHHH-HHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHH
Confidence 7776652 22 22 2 2333 355554432 2333345555554 3467777776666666665
No 148
>PRK09234 fbiC FO synthase; Reviewed
Probab=97.93 E-value=0.00053 Score=78.86 Aligned_cols=188 Identities=13% Similarity=0.210 Sum_probs=118.0
Q ss_pred cCccCCCCCCCCCCCC-C--CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCC----------------H
Q 011810 222 QVGCAMNCQFCYTGRM-G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHN----------------V 281 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~-g--~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln----------------~ 281 (477)
+..|.-+|.||.-.+. + ....|+.+||++.+..+.+ .+++.+.|+| || |-.. .
T Consensus 78 Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~------~G~~e~l~t~-G~~P~~~~~~~~~~l~~~gy~~~~ 150 (843)
T PRK09234 78 TRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAA------AGCKEALFTL-GDRPEDRWPEAREWLDERGYDSTL 150 (843)
T ss_pred CCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHH------CCCCEEEEec-CCCCccccccccccccccccccHH
Confidence 7999999999996532 1 2346899999999987654 3677889998 77 5432 4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhH---cCC-CCCCcHHHHHH
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWI---MPI-NRKYKLGLLIE 355 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I---~pi-~~~~~le~ile 355 (477)
+.+.++++.+.++.|+. +.++- |.+ +++.+|.+.+.- ..+++....+..+.+. ... .++. .++=++
T Consensus 151 ey~~~~~~~ik~~~gl~-----p~i~~-G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~-~~~RL~ 222 (843)
T PRK09234 151 DYVRAMAIRVLEETGLL-----PHLNP-GVMSWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKD-PAVRLR 222 (843)
T ss_pred HHHHHHHHHHHHhcCCC-----ceeee-CCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCC-HHHHHH
Confidence 77888888776666764 33333 543 578888776511 2234444444443221 000 1222 334477
Q ss_pred HHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-----C-eEEEEeecCCCCCC---CCCCcHHHHHHHHH
Q 011810 356 TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIP-----C-KINLISFNPHCGSQ---FTPTTDEKMIEFRN 426 (477)
Q Consensus 356 ~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~-----~-~VnLipynp~~~~~---~~~ps~e~l~~f~~ 426 (477)
.++. ..+.|.+++ ..+|=|+.++.+|.-+....++.+. + .|-+.+|.|.+++. .++++.+++.+...
T Consensus 223 ti~~--A~~lGi~~t--sG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iA 298 (843)
T PRK09234 223 VLED--AGRLSVPFT--TGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIA 298 (843)
T ss_pred HHHH--HHHcCCCcc--ceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHH
Confidence 8875 566676644 4455578889988888888888763 1 35555677776653 45677777666554
Q ss_pred HH
Q 011810 427 IL 428 (477)
Q Consensus 427 ~L 428 (477)
+.
T Consensus 299 va 300 (843)
T PRK09234 299 VA 300 (843)
T ss_pred HH
Confidence 43
No 149
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.60 E-value=0.0058 Score=64.95 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=75.6
Q ss_pred EEEEcCCc---hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCC
Q 011810 304 VTVSTSGL---VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVN 380 (477)
Q Consensus 304 ItvsTNGi---~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvN 380 (477)
++++|-=- .+.+.+++..+-..+-+-+.+..++..++ .++.++.+++.++.+ +++..|.+|... ++||.=
T Consensus 187 itiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~---~~RGHtvedv~~a~r--LlKd~GfKv~~H--iMpGLP 259 (515)
T COG1243 187 ITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLER---TKRGHTVEDVVEATR--LLKDAGFKVGYH--IMPGLP 259 (515)
T ss_pred EEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHH---hcCCccHHHHHHHHH--HHHhcCcEEEEE--ecCCCC
Confidence 78888642 25788999988666678888888877553 567889999999999 468888776654 555531
Q ss_pred --CCHHHHHHHHHHHhcC---CCeEEEEeecCCC---------CCCCCCCcHHHHHHHH
Q 011810 381 --DSFDDAKRLIGLVQGI---PCKINLISFNPHC---------GSQFTPTTDEKMIEFR 425 (477)
Q Consensus 381 --Ds~ed~~~La~ll~~l---~~~VnLipynp~~---------~~~~~~ps~e~l~~f~ 425 (477)
|-+.|++...+.+..- +.-+.+.|--=+. ...|+|.+.|+.-++.
T Consensus 260 gs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli 318 (515)
T COG1243 260 GSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELI 318 (515)
T ss_pred CCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHH
Confidence 3445777777777754 2234444411112 2358888876654443
No 150
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=97.54 E-value=0.0044 Score=65.10 Aligned_cols=188 Identities=20% Similarity=0.246 Sum_probs=106.8
Q ss_pred cCccCCCCCCCCCCCCC---CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCCHHHHHHHHHHHHHhc-C
Q 011810 222 QVGCAMNCQFCYTGRMG---LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHEQ-G 296 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g---~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln~d~vi~~i~~l~~~~-G 296 (477)
+.-|.-+|.||.-.... ....|+++||.+++..+.+ .+++.|.|.| || |-..++...+.++.+.+.. .
T Consensus 66 TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~------~G~~Evli~g-G~~p~~~~~y~~~~~~~ik~~~p~ 138 (370)
T COG1060 66 TNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVK------RGITEVLIVG-GEHPELSLEYYEELFRTIKEEFPD 138 (370)
T ss_pred chhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHH------cCCeEEEEec-CcCCCcchHHHHHHHHHHHHhCcc
Confidence 78999999999954332 3357999999999988754 4899999999 76 6666677777777665432 2
Q ss_pred CCCCCCeEEEEcCC-c----------h-HHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHh
Q 011810 297 LHFSPRKVTVSTSG-L----------V-PQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHF 363 (477)
Q Consensus 297 l~i~~r~ItvsTNG-i----------~-p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~ 363 (477)
+. +.--|++ + . +.+++|.+.+ +.....-=.-..++.|+.+. ..+-+.+.=++.++. +-
T Consensus 139 ~~-----i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~--p~K~~~~~wle~~~~--Ah 209 (370)
T COG1060 139 LH-----IHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC--PPKKSPEEWLEIHER--AH 209 (370)
T ss_pred hh-----hcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhC--CCCCCHHHHHHHHHH--HH
Confidence 22 2233333 2 1 2366676554 21110000011344555555 345567888888886 45
Q ss_pred hcCCeEEEEEEEeCCCCCCHHHHHHHHHHHh----cCCCeEEEEe--ecCCCCC----CCCCCcHHHHHHHHHH
Q 011810 364 KNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ----GIPCKINLIS--FNPHCGS----QFTPTTDEKMIEFRNI 427 (477)
Q Consensus 364 ~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~----~l~~~VnLip--ynp~~~~----~~~~ps~e~l~~f~~~ 427 (477)
+.|.+.+-- .++-++.+ .+|.-.....++ ..+....+|| |.|..+. ...+++.+++.+...+
T Consensus 210 ~lGI~~tat-ml~Gh~E~-~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAi 281 (370)
T COG1060 210 RLGIPTTAT-MLLGHVET-REDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIAL 281 (370)
T ss_pred HcCCCccce-eEEEecCC-HHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHH
Confidence 667665433 33444433 444443333333 3344555555 5565442 2344555555444433
No 151
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=97.53 E-value=0.0032 Score=64.03 Aligned_cols=215 Identities=18% Similarity=0.212 Sum_probs=133.7
Q ss_pred eEEEEec--CccCCCCCCCCCCCCC--------CC----cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCH
Q 011810 216 TVCVSSQ--VGCAMNCQFCYTGRMG--------LK----RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV 281 (477)
Q Consensus 216 tlCVSsq--~GCnl~C~FC~tg~~g--------~~----r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~ 281 (477)
|+.+-+. .||-.+|.||...+.. +. .....++++..+...... ..++ .+.=.-+|=.+.
T Consensus 30 ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~----~~ri---ci~~i~~p~~~~ 102 (339)
T COG2516 30 TAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGN----FKRI---CIQQIAYPRALN 102 (339)
T ss_pred eeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhcc----cccc---cceeeccccccc
Confidence 3334344 7899999999965421 11 123345555555432211 1233 233345566664
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEE----cCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhH-cCCCCCCcHHHHHHH
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVS----TSGLVPQLKQFLNESNCALAVSLNATTDEVRNWI-MPINRKYKLGLLIET 356 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~Itvs----TNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I-~pi~~~~~le~ile~ 356 (477)
| +...++.++...|.. |+|+ -.++.+.+.+..+.+-..|.|-+++++++.++++ ++.+-.++++.-++.
T Consensus 103 d-~~~i~~~~~~~~~~~-----itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~ 176 (339)
T COG2516 103 D-LKLILERLHIRLGDP-----ITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEF 176 (339)
T ss_pred h-hhhhhhhhhhccCCc-----eehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHH
Confidence 4 455555555456654 6666 2233566666666664456789999999999999 555556788998888
Q ss_pred HHHHHHhhcC-CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCC---CCCCCcHHHHHHHH--HHHHh
Q 011810 357 LREELHFKNN-YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS---QFTPTTDEKMIEFR--NILAG 430 (477)
Q Consensus 357 l~~~l~~~~~-~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~---~~~~ps~e~l~~f~--~~L~~ 430 (477)
+.+ .+..-+ .++.+..++ |.-.++.++-+....+...+..|.|..|.|..+. +..+++.+.+.+.+ .+|.+
T Consensus 177 l~~-~~~~~~k~rv~ihliV--glGesD~~~ve~~~~v~~~g~~v~Lfaf~P~~gt~me~r~~~pve~Yrk~q~a~yli~ 253 (339)
T COG2516 177 LEK-VAEAFGKGRVGIHLIV--GLGESDKDIVETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERYRKIQVARYLIG 253 (339)
T ss_pred HHH-HHHHhccCCcceeEEe--ccCCchHHHHHHHHHHHhcCceEEEEEecccccccccCCCCCcHHHHHHHHHHHHHHh
Confidence 887 344444 666665444 4557778888888888888889999999998665 46777777766554 36777
Q ss_pred CCCe---EEecCCCCCccc
Q 011810 431 AGCT---VFLRLSRGDDQM 446 (477)
Q Consensus 431 ~Gi~---v~vR~s~G~di~ 446 (477)
.|.. +..-.+.|.-|+
T Consensus 254 ~G~v~~~~~~fde~g~lI~ 272 (339)
T COG2516 254 NGEVDLEDFEFDEFGNLID 272 (339)
T ss_pred cCccchhhcccccccceec
Confidence 7742 233344454444
No 152
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.45 E-value=0.053 Score=55.55 Aligned_cols=200 Identities=15% Similarity=0.206 Sum_probs=121.3
Q ss_pred cCccCC----CCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccC-CCeeEEEEecCCcccCCHH-----HHHHHHHHH
Q 011810 222 QVGCAM----NCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEV-GSITNVVFMGMGEPLHNVE-----NVIKAANIM 291 (477)
Q Consensus 222 q~GCnl----~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~-~~v~nIvF~GmGEPLln~d-----~vi~~i~~l 291 (477)
+.||-+ +|.+|......-+..++.++++.|+..+...++... ..+-.| |+. |- +++.. ....+++.+
T Consensus 54 T~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkI-FTS-GS-FLD~~EVP~e~R~~Il~~i 130 (358)
T COG1244 54 TRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKI-FTS-GS-FLDPEEVPREARRYILERI 130 (358)
T ss_pred cCCcceeccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEE-Ecc-cc-cCChhhCCHHHHHHHHHHH
Confidence 567765 589998766544778999999999998866554221 222234 333 54 55432 334444545
Q ss_pred HHhcCCCCCCCeEEEEcCC-c-h-HHHHHHHh---cCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhc
Q 011810 292 VHEQGLHFSPRKVTVSTSG-L-V-PQLKQFLN---ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKN 365 (477)
Q Consensus 292 ~~~~Gl~i~~r~ItvsTNG-i-~-p~i~~L~~---~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~ 365 (477)
.+...+. ++.|.|-- + . +.+.++.+ ...+-++|-|.+.+|++|+. -+|+.+++++.+++++. ++..
T Consensus 131 s~~~~v~----~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~--sINKGftF~df~~A~~~--ir~~ 202 (358)
T COG1244 131 SENDNVK----EVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIRED--SINKGFTFEDFVRAAEI--IRNY 202 (358)
T ss_pred hhcccee----EEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHH--hhhcCCcHHHHHHHHHH--HHHc
Confidence 4443343 68887754 2 2 34444444 44678899999999999863 46888999999999996 5667
Q ss_pred CCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC---eEEEEeecCCCCC---------CCCCCcHHHHHHHHHHHHhCC
Q 011810 366 NYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC---KINLISFNPHCGS---------QFTPTTDEKMIEFRNILAGAG 432 (477)
Q Consensus 366 ~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~---~VnLipynp~~~~---------~~~~ps~e~l~~f~~~L~~~G 432 (477)
|..+. .|+|++-. -...+.+++...-+..... .|.+-|-|-..++ .|+||=--.+.+..+.+++.+
T Consensus 203 g~~vk-tYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~ 281 (358)
T COG1244 203 GAKVK-TYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTG 281 (358)
T ss_pred CCcee-EEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcC
Confidence 76654 47777542 2223344444444443322 3444343322332 578887666666666666655
Q ss_pred C
Q 011810 433 C 433 (477)
Q Consensus 433 i 433 (477)
.
T Consensus 282 ~ 282 (358)
T COG1244 282 P 282 (358)
T ss_pred C
Confidence 4
No 153
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.25 E-value=0.037 Score=55.62 Aligned_cols=193 Identities=16% Similarity=0.231 Sum_probs=112.9
Q ss_pred CCCCCCCCCCC---CCcCCCH-HHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHH----HHhcCCCC
Q 011810 228 NCQFCYTGRMG---LKRHLTA-AEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIM----VHEQGLHF 299 (477)
Q Consensus 228 ~C~FC~tg~~g---~~r~Lt~-eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l----~~~~Gl~i 299 (477)
+|.||.-...+ ..+..+. +++-+|+....+-+. ....|+++- |+.|--+=++.++.+ .+..|+
T Consensus 45 GCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~----~~kyiaYFQ---~~TNTyApvevLre~ye~aL~~~~V-- 115 (312)
T COG1242 45 GCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWK----RGKYIAYFQ---AYTNTYAPVEVLREMYEQALSEAGV-- 115 (312)
T ss_pred ceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhc----CCcEEEEEe---ccccccCcHHHHHHHHHHHhCcCCe--
Confidence 59999643222 2233332 234444444443332 223666666 666622223334432 222332
Q ss_pred CCCeEEEEcCC-ch-HHHHHHH----hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEE
Q 011810 300 SPRKVTVSTSG-LV-PQLKQFL----NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 373 (477)
Q Consensus 300 ~~r~ItvsTNG-i~-p~i~~L~----~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~iey 373 (477)
.-++|.|-= .+ +.+-+++ +..+++|-+-|.+.++++-+. +|+.+.++...+++++ .++.|.+|....
T Consensus 116 --VGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~---iNRgHd~~~y~dav~r--~rkrgIkvc~Hi 188 (312)
T COG1242 116 --VGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKR---INRGHDFACYVDAVKR--LRKRGIKVCTHL 188 (312)
T ss_pred --eEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHH---HhcccchHHHHHHHHH--HHHcCCeEEEEE
Confidence 013333321 12 3444444 345789999999999988665 4677889999999998 477888887776
Q ss_pred EE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC---------CCCCCcHHH-HHHHHHHHHhCCCeEEec
Q 011810 374 VM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS---------QFTPTTDEK-MIEFRNILAGAGCTVFLR 438 (477)
Q Consensus 374 vL-I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~---------~~~~ps~e~-l~~f~~~L~~~Gi~v~vR 438 (477)
++ +|| ++.++.-+.++.+..+++ .|.|-|++-..++ .++..+.|+ ++...+.|+-.--.+.+-
T Consensus 189 I~GLPg--E~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviH 263 (312)
T COG1242 189 INGLPG--ETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIH 263 (312)
T ss_pred eeCCCC--CCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHHhCCcceEEE
Confidence 55 577 678889999999988875 4666666544333 456666555 444556666554445443
No 154
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=97.23 E-value=0.0041 Score=65.56 Aligned_cols=196 Identities=20% Similarity=0.307 Sum_probs=115.5
Q ss_pred cCccCCCCCCCCCCCCC-CC-----cCCCHHHHHHHHHHH----HHHhcc----------cCCCeeEEEEecCCcccCCH
Q 011810 222 QVGCAMNCQFCYTGRMG-LK-----RHLTAAEIVEQAVFA----RRLLSS----------EVGSITNVVFMGMGEPLHNV 281 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g-~~-----r~Lt~eEIv~qv~~~----~~~~~~----------~~~~v~nIvF~GmGEPLln~ 281 (477)
.-||.-.|+||...... .+ .--.++-|+..+... .+.+.. ....+.+-.++=.|||.+.+
T Consensus 290 slacanKcvfcWrh~tnpv~~~wrwk~d~pevil~gal~lhy~mikqmkgvpgvk~Er~~ea~evrhcalslVgepi~yp 369 (601)
T KOG1160|consen 290 SLACANKCVFCWRHDTNPVGEIWRWKMDAPEVILKGALYLHYNMIKQMKGVPGVKAERFEEAEEVRHCALSLVGEPIMYP 369 (601)
T ss_pred CcccCCCCceeeeccCCcccceEEEecCCchhhhHHHHHHHHHHHHHhhcCCCcCHHHHHhhhhhhhheeeeecccccch
Confidence 36899999999964321 11 112233344333322 111110 01234444455568999984
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCchH-HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP-QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p-~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
.+-.+++ +.|++.+. --+.||...| .+..+.+.. .|.+|+++.+...-..+-..--++=+|.+++.++.
T Consensus 370 -~in~f~k-~lH~k~is-----sflvtnaq~pe~~rnvk~vt--qlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~- 439 (601)
T KOG1160|consen 370 -EINPFAK-LLHQKLIS-----SFLVTNAQFPEDIRNVKPVT--QLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA- 439 (601)
T ss_pred -hhhHHHH-HHHhccch-----HHhcccccChHHHhchhhhh--eeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH-
Confidence 5777777 45677765 5678898765 455444433 45689999887654433211112236667777775
Q ss_pred HHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHh-cCCCeEEEEeecCCCCC------CCCCCcHHHHHHHHHHHHh
Q 011810 361 LHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQ-GIPCKINLISFNPHCGS------QFTPTTDEKMIEFRNILAG 430 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~-~l~~~VnLipynp~~~~------~~~~ps~e~l~~f~~~L~~ 430 (477)
+ ++...+..++.+|++|.|. +++.+.+++++ +++..|.+.-..-.+.+ .-..|..|++-+|...|.+
T Consensus 440 l-k~K~qrtvyRlTlVkg~n~--dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL~~ 513 (601)
T KOG1160|consen 440 L-KKKQQRTVYRLTLVKGWNS--DDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFELVD 513 (601)
T ss_pred H-HHhhcceEEEEEEeccccc--cccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHHHH
Confidence 3 3445567899999999984 46777777776 56667766654333222 2244567777788777744
No 155
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=96.95 E-value=0.037 Score=55.48 Aligned_cols=195 Identities=12% Similarity=0.127 Sum_probs=114.4
Q ss_pred cCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC---HHHHHHHHHHHHHhcCCC
Q 011810 222 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN---VENVIKAANIMVHEQGLH 298 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln---~d~vi~~i~~l~~~~Gl~ 298 (477)
..-|.-+|.||.-.... ...+.++|=..-...++. .++.+||+++.--==|. ...+.+.++.+....-
T Consensus 77 G~~CTR~C~FC~V~~g~-P~~lD~~EP~rvAeaV~~------mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P-- 147 (306)
T COG0320 77 GDICTRRCRFCDVKTGR-PNPLDPDEPERVAEAVKD------MGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNP-- 147 (306)
T ss_pred cchhccCCCccccCCCC-CCCCCCchHHHHHHHHHH------hCCCeEEEEeeccccccccchHHHHHHHHHHHhhCC--
Confidence 46799999999976543 555666665544444332 37889999874211110 1133444444433221
Q ss_pred CCCCeEEEEcC---CchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcC-CCCCCcHHHHHHHHHHHHHhhcCCeEEEEEE
Q 011810 299 FSPRKVTVSTS---GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP-INRKYKLGLLIETLREELHFKNNYKVLFEYV 374 (477)
Q Consensus 299 i~~r~ItvsTN---Gi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~p-i~~~~~le~ile~l~~~l~~~~~~~V~ieyv 374 (477)
.-.|.+.|- |....++.+++.....++ -|-|+-.+++| +..+..++.-++-|+. .++.+..+...--
T Consensus 148 --~t~iEvL~PDF~G~~~al~~v~~~~pdV~n-----HNvETVprL~~~VRp~A~Y~~SL~~L~~--~k~~~P~i~TKSg 218 (306)
T COG0320 148 --QTTIEVLTPDFRGNDDALEIVADAGPDVFN-----HNVETVPRLYPRVRPGATYERSLSLLER--AKELGPDIPTKSG 218 (306)
T ss_pred --CceEEEeCccccCCHHHHHHHHhcCcchhh-----cccccchhcccccCCCCcHHHHHHHHHH--HHHhCCCcccccc
Confidence 123666664 434566777776643332 22244334443 2233456777777775 3555555555555
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCeE-EEEee-cCCCCC-C-CCCCcHHHHHHHHHHHHhCCCe
Q 011810 375 MLAGVNDSFDDAKRLIGLVQGIPCKI-NLISF-NPHCGS-Q-FTPTTDEKMIEFRNILAGAGCT 434 (477)
Q Consensus 375 LI~GvNDs~ed~~~La~ll~~l~~~V-nLipy-np~~~~-~-~~~ps~e~l~~f~~~L~~~Gi~ 434 (477)
++=|+-+..+++.+..+-|+..++.+ -+-.| .|.... + .+-.++|+.++|+++..+.|+.
T Consensus 219 iMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~~GF~ 282 (306)
T COG0320 219 LMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEEMGFL 282 (306)
T ss_pred eeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccCCceeccCHHHHHHHHHHHHHccch
Confidence 66788888888888888888777743 33344 454321 1 2345678999999999999984
No 156
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=96.84 E-value=0.15 Score=54.53 Aligned_cols=190 Identities=15% Similarity=0.210 Sum_probs=111.1
Q ss_pred CceeEE-EEecCccCCC----CCCCCCCCCCCCcCCCHHHHHHHHHHHHH----HhcccCCCeeEEEEecC---C-cccC
Q 011810 213 GRTTVC-VSSQVGCAMN----CQFCYTGRMGLKRHLTAAEIVEQAVFARR----LLSSEVGSITNVVFMGM---G-EPLH 279 (477)
Q Consensus 213 ~r~tlC-VSsq~GCnl~----C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~----~~~~~~~~v~nIvF~Gm---G-EPLl 279 (477)
+.+.+| +-++.||+.. |.||-.+-.|...+.+++.+++++...-+ +++- ++..+-..|+|- | =|--
T Consensus 180 p~~vi~EiETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRl-GRQ~difsy~~~~~g~e~P~P 258 (560)
T COG1031 180 PEYVICEIETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRL-GRQADIFSYGADDNGGEVPRP 258 (560)
T ss_pred cceEEEEEeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeee-ccccceeeecccccCCCCCCC
Confidence 345566 7789999997 99999887677777899999999876522 1111 223333344433 3 2444
Q ss_pred CHHHHHHHHHHHHHhc-CCCCCCCeEEEEcC--Cch---H----HHHH-HHhcC--CeEEEEeeCCCCHHHHhhHcCCCC
Q 011810 280 NVENVIKAANIMVHEQ-GLHFSPRKVTVSTS--GLV---P----QLKQ-FLNES--NCALAVSLNATTDEVRNWIMPINR 346 (477)
Q Consensus 280 n~d~vi~~i~~l~~~~-Gl~i~~r~ItvsTN--Gi~---p----~i~~-L~~~~--d~~LaISL~a~~~e~r~~I~pi~~ 346 (477)
|++.+.++.+-+.... ++. ...++.. ++. | ++.+ +...+ ..+.++-+.++|+..-++ .|-
T Consensus 259 nPealekL~~Gir~~AP~l~----tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~---NnL 331 (560)
T COG1031 259 NPEALEKLFRGIRNVAPNLK----TLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARK---NNL 331 (560)
T ss_pred CHHHHHHHHHHHHhhCCCCe----eeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhh---ccc
Confidence 7888887777665433 332 1222221 121 2 3333 33443 344589999999876442 222
Q ss_pred CCcHHHHHHHHHHHHHhhcC-CeEEEEE-EEeCCCC-------CCHHHHHHHHHHHhcC---C--C-eEEEEeecCCCCC
Q 011810 347 KYKLGLLIETLREELHFKNN-YKVLFEY-VMLAGVN-------DSFDDAKRLIGLVQGI---P--C-KINLISFNPHCGS 411 (477)
Q Consensus 347 ~~~le~ile~l~~~l~~~~~-~~V~iey-vLI~GvN-------Ds~ed~~~La~ll~~l---~--~-~VnLipynp~~~~ 411 (477)
..+-|+++++++- ..+.| .+-+--. -|+||+| ++.|..+.=.+||+.+ + . +||+-.+-+.+++
T Consensus 332 ~~spEEvl~AV~i--vn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT 409 (560)
T COG1031 332 NASPEEVLEAVEI--VNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGT 409 (560)
T ss_pred cCCHHHHHHHHHH--HHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCC
Confidence 4467999999995 44433 2222111 1345554 4566666666777754 2 2 6888777777766
Q ss_pred C
Q 011810 412 Q 412 (477)
Q Consensus 412 ~ 412 (477)
+
T Consensus 410 ~ 410 (560)
T COG1031 410 P 410 (560)
T ss_pred c
Confidence 4
No 157
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.98 E-value=0.32 Score=47.87 Aligned_cols=180 Identities=10% Similarity=0.040 Sum_probs=107.6
Q ss_pred CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc----CCHHHHHHHHHHHHHhc-CCCCCCCeEEEEcCCchHH
Q 011810 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL----HNVENVIKAANIMVHEQ-GLHFSPRKVTVSTSGLVPQ 314 (477)
Q Consensus 240 ~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL----ln~d~vi~~i~~l~~~~-Gl~i~~r~ItvsTNGi~p~ 314 (477)
...++.++.++-+....+ .+|..|-+.+ |+|. +..+ ..+.++.+.+.. +.. -..+.+|| ...
T Consensus 13 ~~~~s~e~~~~i~~~L~~------~GV~~IEvg~-~~~~~~~p~~~~-~~~~i~~l~~~~~~~~----~~~l~~~~-~~~ 79 (265)
T cd03174 13 GATFSTEDKLEIAEALDE------AGVDSIEVGS-GASPKAVPQMED-DWEVLRAIRKLVPNVK----LQALVRNR-EKG 79 (265)
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCEEEecc-CcCccccccCCC-HHHHHHHHHhccCCcE----EEEEccCc-hhh
Confidence 356788888777765433 3788888877 8887 2222 344555444332 222 23777787 556
Q ss_pred HHHHHhcCCeEEEEeeCCCCHHHHhhHc-CCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHH
Q 011810 315 LKQFLNESNCALAVSLNATTDEVRNWIM-PINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393 (477)
Q Consensus 315 i~~L~~~~d~~LaISL~a~~~e~r~~I~-pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll 393 (477)
++++.+.+...+.+++.+.+ .|.+.. .......++++++.++. .++.|..+.+...-+-+--.+++++.++++.+
T Consensus 80 i~~a~~~g~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~--a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 80 IERALEAGVDEVRIFDSASE--THSRKNLNKSREEDLENAEEAIEA--AKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred HHHHHhCCcCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHH--HHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 77777776455678887764 444432 22333457888888885 56777766665533322014678899999999
Q ss_pred hcCCC-eEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC-C-Ce--EEecCCCCC
Q 011810 394 QGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNILAGA-G-CT--VFLRLSRGD 443 (477)
Q Consensus 394 ~~l~~-~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~-G-i~--v~vR~s~G~ 443 (477)
...++ .|. +.++.+. .+++++.++.+.+++. + +. +..-...|-
T Consensus 156 ~~~g~~~i~---l~Dt~G~----~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gl 203 (265)
T cd03174 156 EEAGADEIS---LKDTVGL----ATPEEVAELVKALREALPDVPLGLHTHNTLGL 203 (265)
T ss_pred HHcCCCEEE---echhcCC----cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCCh
Confidence 88875 344 3333332 4567777777776653 2 33 344445444
No 158
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=94.69 E-value=1.7 Score=44.05 Aligned_cols=192 Identities=10% Similarity=0.166 Sum_probs=108.8
Q ss_pred cCccCCCCCCCCCCCCCCCcC---CCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc---ccCCHHHHHHHHHHHHHhc
Q 011810 222 QVGCAMNCQFCYTGRMGLKRH---LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE---PLHNVENVIKAANIMVHEQ 295 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~g~~r~---Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE---PLln~d~vi~~i~~l~~~~ 295 (477)
..-|.-+|+||.......... ..++...+.|. .+ ++..||++..-- |=.-.+.+.+.++.|....
T Consensus 118 GDTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIa----sW-----gl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~ 188 (360)
T KOG2672|consen 118 GDTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIA----SW-----GLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKA 188 (360)
T ss_pred cCccccCcceeeeecCCCCcCCCCCCcccHHHHHH----Hc-----CCCeEEEEecccccCcCcchHHHHHHHHHHHhhC
Confidence 356999999999654332222 22332333222 11 678888875311 1111345666676554322
Q ss_pred CCCCCCCeEEEEc-----CCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCC--CCCCcHHHHHHHHHHHHHhhcCCe
Q 011810 296 GLHFSPRKVTVST-----SGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI--NRKYKLGLLIETLREELHFKNNYK 368 (477)
Q Consensus 296 Gl~i~~r~ItvsT-----NGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi--~~~~~le~ile~l~~~l~~~~~~~ 368 (477)
-+ |-|.+ .|-...++.++..+ +++-|-|-|+-++++|. +++-.+.+-+..++. +++....
T Consensus 189 -p~-----ilvE~L~pDF~Gd~~~Ve~va~SG-----LDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~--aK~~~P~ 255 (360)
T KOG2672|consen 189 -PE-----ILVECLTPDFRGDLKAVEKVAKSG-----LDVYAHNVETVEELTPFVRDPRANYRQSLSVLKH--AKEVKPG 255 (360)
T ss_pred -cc-----cchhhcCccccCchHHHHHHHhcC-----ccceecchhhHHhcchhhcCcccchHHhHHHHHH--HHhhCCC
Confidence 11 22222 23334566676665 34445666777777773 345568888888885 5666666
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeE-EEEeecCCCCCC---CCCCcHHHHHHHHHHHHhCCCeE
Q 011810 369 VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI-NLISFNPHCGSQ---FTPTTDEKMIEFRNILAGAGCTV 435 (477)
Q Consensus 369 V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~V-nLipynp~~~~~---~~~ps~e~l~~f~~~L~~~Gi~v 435 (477)
+.-...++-|.-.++|++....+.++..++.| -+-.|.+..... ..-.++|..+...++-.+.|+..
T Consensus 256 litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyvtpekf~~w~~~~~~lgf~y 326 (360)
T KOG2672|consen 256 LITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYVTPEKFDYWKEYGEELGFLY 326 (360)
T ss_pred ceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEeeCHHHHHHHHHHhhhcceEE
Confidence 65556666777788889998888888776543 333454332211 11233455666666667777754
No 159
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=93.94 E-value=2.3 Score=43.51 Aligned_cols=240 Identities=18% Similarity=0.216 Sum_probs=119.7
Q ss_pred cCCCeeEEEEeccCCCceeEEEEe-----cCccCCCCCCCCCCCC-CCC-cCCCHHHHHHHHHHHHHHhcccCCCeeEEE
Q 011810 198 DDGLVIETVVIPCNRGRTTVCVSS-----QVGCAMNCQFCYTGRM-GLK-RHLTAAEIVEQAVFARRLLSSEVGSITNVV 270 (477)
Q Consensus 198 ~DG~~IEtVlip~~~~r~tlCVSs-----q~GCnl~C~FC~tg~~-g~~-r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIv 270 (477)
..|++|-..+-| +|| |||. ++-|=..|.||-|... ... -.+|++||++-.+..-+ . .-|..+.
T Consensus 37 te~~GIchs~a~--dGr---CIsLlKiLlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYr---R--nYIeGLF 106 (404)
T COG4277 37 TEGPGICHSYAP--DGR---CISLLKILLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYR---R--NYIEGLF 106 (404)
T ss_pred cccCceeeecCC--CCc---cHHHHHHHHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHH---H--hhhhhhe
Confidence 346677655544 243 6664 5789999999998532 222 35899999998765421 1 1233333
Q ss_pred EecCC---cccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCC
Q 011810 271 FMGMG---EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347 (477)
Q Consensus 271 F~GmG---EPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~ 347 (477)
++. | .|=.-.+.+++.++++.-+.+++ +--+..+..-....-|++.....| .+.|.+.-+.++--+.+-|....
T Consensus 107 LSS-Gvi~~~DyTmE~mi~var~LRle~~f~-GYIHlK~IPgas~~li~eaglyad-RvSiNIElp~~~~lk~lap~K~p 183 (404)
T COG4277 107 LSS-GVIKNPDYTMEEMIEVARILRLEHKFR-GYIHLKIIPGASPDLIKEAGLYAD-RVSINIELPTDDGLKLLAPEKDP 183 (404)
T ss_pred ecc-ccccCcchHHHHHHHHHHHHhhccccC-cEEEEEecCCCCHHHHHHHhhhhh-eeEEeEecCCcchhhhhCCCCCh
Confidence 333 3 22222456667777665555553 111222222222233455444443 23566666766666667775433
Q ss_pred CcHHHHHHHHHHHHHh------hcC--CeE---EEEEEEeCC-CCCCHHHHHHHHHHHhcC-C-CeEEEEeecCCCCCC-
Q 011810 348 YKLGLLIETLREELHF------KNN--YKV---LFEYVMLAG-VNDSFDDAKRLIGLVQGI-P-CKINLISFNPHCGSQ- 412 (477)
Q Consensus 348 ~~le~ile~l~~~l~~------~~~--~~V---~ieyvLI~G-vNDs~ed~~~La~ll~~l-~-~~VnLipynp~~~~~- 412 (477)
.++..-+.-++.-+.+ ..+ ..+ -=.+-||-| .-++.+++-...+.+-+. . -+|..-.|.|.+.++
T Consensus 184 ~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~ 263 (404)
T COG4277 184 TDILRSMGWIRLKILENAEDKRRKRHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPL 263 (404)
T ss_pred HHHHHHHHHHHHHHhhcccchhhhccCccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCC
Confidence 3333222222210000 000 000 011223333 345666676666666543 3 267777888887653
Q ss_pred ---CCCCcHHHHHHH-HHHH-HhCCCeE-EecCCCCC----ccccccc
Q 011810 413 ---FTPTTDEKMIEF-RNIL-AGAGCTV-FLRLSRGD----DQMAACG 450 (477)
Q Consensus 413 ---~~~ps~e~l~~f-~~~L-~~~Gi~v-~vR~s~G~----di~aaCG 450 (477)
.++|-..+..-+ +++| +-+|+.. .++.+.|+ |++.-|.
T Consensus 264 lp~~~pplmRehRLYQADwLlrfYgF~~~Ei~~~g~~~ld~~lDPK~~ 311 (404)
T COG4277 264 LPDDKPPLMREHRLYQADWLLRFYGFSADEILASGGDFLDPDLDPKTA 311 (404)
T ss_pred CcccCCchhHHHHHHHHHHHHHHhCCCHHHHHhcCCCccCCCCChhhH
Confidence 244443333322 2444 5578864 45555555 4555443
No 160
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=91.29 E-value=1.1 Score=44.73 Aligned_cols=161 Identities=21% Similarity=0.379 Sum_probs=90.1
Q ss_pred cCccCCCCCCCCCCC---CCC--CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-------CHHHHHHHHH
Q 011810 222 QVGCAMNCQFCYTGR---MGL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-------NVENVIKAAN 289 (477)
Q Consensus 222 q~GCnl~C~FC~tg~---~g~--~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-------n~d~vi~~i~ 289 (477)
+.||.-.|.||+... .|. .+-+..+|+++....+.+. +.-+ | -||-..- ++..+.+.|+
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~-----GSTR---F-CmGaAWRD~~GRk~~fk~IlE~ik 161 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN-----GSTR---F-CMGAAWRDMKGRKSAFKRILEMIK 161 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhc-----CCce---e-ecchhhhhhccchhHHHHHHHHHH
Confidence 689999999999542 333 3567889999888877542 2222 2 2344332 2345555555
Q ss_pred HHHHhcCCCCCCCeEEEEcCCchH--HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCC
Q 011810 290 IMVHEQGLHFSPRKVTVSTSGLVP--QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNY 367 (477)
Q Consensus 290 ~l~~~~Gl~i~~r~ItvsTNGi~p--~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~ 367 (477)
.+ +..|+. +..|=|+++ +.++|-+.+...-.-.||... |.|.++.-. -++++-++.|+. .++.|.
T Consensus 162 ev-r~MgmE------vCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSR-EyYskvItT---RtYDdRL~Ti~n--vr~aGi 228 (380)
T KOG2900|consen 162 EV-RDMGME------VCVTLGMVDQQQAKELKDAGLTAYNHNLDTSR-EYYSKVITT---RTYDDRLQTIKN--VREAGI 228 (380)
T ss_pred HH-HcCCce------eeeeeccccHHHHHHHHhccceecccCccchh-hhhccccee---cchHHHHHHHHH--HHHhcc
Confidence 33 234443 344778763 567777665222122333332 344444332 246788899987 467777
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeec
Q 011810 368 KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN 406 (477)
Q Consensus 368 ~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipyn 406 (477)
++.---++ |+.++++|--.|..-+..++.+-.-.|+|
T Consensus 229 kvCsGGIl--GLGE~e~DriGlihtLatmp~HPESvPiN 265 (380)
T KOG2900|consen 229 KVCSGGIL--GLGESEDDRIGLIHTLATMPPHPESVPIN 265 (380)
T ss_pred eecccccc--cccccccceeeeeeeeccCCCCCcccccc
Confidence 66543333 45566666555555566565444334443
No 161
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=87.98 E-value=27 Score=37.13 Aligned_cols=173 Identities=18% Similarity=0.307 Sum_probs=92.6
Q ss_pred EEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHH-----HHHHHHHHH
Q 011810 218 CVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE-----NVIKAANIM 291 (477)
Q Consensus 218 CVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d-----~vi~~i~~l 291 (477)
.||...||--.|.||.+... |.-...+.+++++.+....+ .++..|-++. |-+-.|. ++-.++..+
T Consensus 190 Ii~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~------egv~eIwlts--edTgaygrdig~slp~ll~kl 261 (547)
T KOG4355|consen 190 IISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFE------EGVCEIWLTS--EDTGAYGRDIGKSLPKLLWKL 261 (547)
T ss_pred EEEeccccccccccccccccccccccCCHHHHHHHHHHHHh------cCcEEEEecc--cccchhhhhhhhhhHHHHHHH
Confidence 34557999999999999653 33456789999988876432 3555555542 3332221 222222222
Q ss_pred HH----hcCCCCCCCeEEEEcCC--chHHHHHHH---hcCCe--EEEEeeCCCCHHHHhhHcCCCCCC---cHHHHHHHH
Q 011810 292 VH----EQGLHFSPRKVTVSTSG--LVPQLKQFL---NESNC--ALAVSLNATTDEVRNWIMPINRKY---KLGLLIETL 357 (477)
Q Consensus 292 ~~----~~Gl~i~~r~ItvsTNG--i~p~i~~L~---~~~d~--~LaISL~a~~~e~r~~I~pi~~~~---~le~ile~l 357 (477)
.+ ..++. +. -||- +++.+.+.+ ....+ .|.+-+.+..|.. ++-.++.| .++.+.+.+
T Consensus 262 v~~iPe~cmlr-----~g-mTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsv---l~emkreyc~~dfk~Vvd~L 332 (547)
T KOG4355|consen 262 VEVIPESCMLR-----AG-MTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSV---LTEMKREYCNFDFKIVVDFL 332 (547)
T ss_pred HHhcchhhhhh-----hc-CCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhH---HHHHHHHHhhhhHHHHHHHH
Confidence 22 22221 11 1332 123333322 22222 2334444444433 22223323 355566665
Q ss_pred HHHHHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 358 REELHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 358 ~~~l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
.+ .-..++|.+=+|-|+ .++.+|.++-.+++++... .+.+-.|.|-+|.+
T Consensus 333 te-----rVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTP 384 (547)
T KOG4355|consen 333 TE-----RVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTP 384 (547)
T ss_pred Hh-----hCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCCh
Confidence 54 223467777777665 3678899999999998753 34445788877753
No 162
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=77.87 E-value=19 Score=39.01 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=25.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
+.+|.|.|. +.|++++.++|+.++.++|++|
T Consensus 165 VNii~~~~~-~~D~~ei~~lL~~~Gl~v~~~~ 195 (454)
T cd01973 165 LNVFTGWVN-PGDVVELKHYLSEMDVEANILM 195 (454)
T ss_pred EEEECCCCC-hHHHHHHHHHHHHcCCCEEEee
Confidence 346778764 7899999999999999999886
No 163
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=76.35 E-value=26 Score=37.44 Aligned_cols=116 Identities=18% Similarity=0.249 Sum_probs=63.6
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhc----CCeEEEEeeCCCCHHHH
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNE----SNCALAVSLNATTDEVR 338 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~----~d~~LaISL~a~~~e~r 338 (477)
++| || +++.+.|+.+.+... ++-|.|.|.... +.+ +++-++ .+..+ +.++++.=.-
T Consensus 62 VfG-g~-----~~L~~~i~~~~~~~~----p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~v-i~v~t~gf~g- 129 (417)
T cd01966 62 ILG-GG-----ENLEEALDTLAERAK----PKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPV-VYVSTPDFEG- 129 (417)
T ss_pred EEC-CH-----HHHHHHHHHHHHhcC----CCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeE-EEecCCCCCC-
Confidence 458 77 778888887665432 344666666542 233 333333 13333 5666654211
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhcC--CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 339 NWIMPINRKYKLGLLIETLREELHFKNN--YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 339 ~~I~pi~~~~~le~ile~l~~~l~~~~~--~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
.... -++..++++-+++..... ....-.+-+|.|.|-++.|+++|.++++.++.+++++|
T Consensus 130 ~~~~------G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~l~ 191 (417)
T cd01966 130 SLED------GWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPIILP 191 (417)
T ss_pred cHHH------HHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 0011 134455554432222111 01111234678887778899999999999998888775
No 164
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=75.95 E-value=21 Score=38.74 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=61.0
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch----HHHHHHHh--------c---CCeEEEEeeCCCCH
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQFLN--------E---SNCALAVSLNATTD 335 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~----p~i~~L~~--------~---~d~~LaISL~a~~~ 335 (477)
++| || +++.++|+.+.+... .++-|.|.|.... +.+..++. + .++.+ |.++++.=
T Consensus 70 VfG-G~-----~kL~~aI~~~~~~~~---~p~~I~V~ttC~~eiIGDDi~~v~~~~~~~~~~e~~~~~~~v-v~v~tpgF 139 (457)
T TIGR02932 70 VFG-GA-----KRIEEGVLTLARRYP---NLRVIPIITTCSTETIGDDIEGSIRKVNRALKKEFPDRKIKL-VPVHTPSF 139 (457)
T ss_pred EEC-cH-----HHHHHHHHHHHHhCC---CCCEEEEECCchHHhhcCCHHHHHHHHHhhhhhhcCCCCCeE-EEeeCCCC
Confidence 347 77 678888887665431 1234777666542 22332221 1 13333 56665542
Q ss_pred HHHhhHcCCCCCCcHHHHHHHHHHHHHhhcC-CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 336 EVRNWIMPINRKYKLGLLIETLREELHFKNN-YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 336 e~r~~I~pi~~~~~le~ile~l~~~l~~~~~-~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
.- .... .++..++++-+++..... .+- .+-+|.|.+. +.|+++|.+++..++.++|.+|
T Consensus 140 ~g-s~~~------G~~~a~~ali~~~~~~~~~~~~--~VNii~~~~~-~gD~~eik~lL~~~Gl~vn~l~ 199 (457)
T TIGR02932 140 KG-SQVT------GYAECVKSVIKTIAAKKGEPSG--KLNVFPGWVN-PGDVVLLKHYFSEMGVDANILM 199 (457)
T ss_pred cC-cHHH------HHHHHHHHHHHHHhhccCCCCC--cEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEe
Confidence 11 1111 134455544432322111 111 2346778764 6899999999999999999875
No 165
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=70.00 E-value=2.5 Score=44.86 Aligned_cols=56 Identities=27% Similarity=0.440 Sum_probs=44.4
Q ss_pred CceeEEEEecCccCCCCCCCCCC-CCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC
Q 011810 213 GRTTVCVSSQVGCAMNCQFCYTG-RMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM 274 (477)
Q Consensus 213 ~r~tlCVSsq~GCnl~C~FC~tg-~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm 274 (477)
...|..||...||+--|.||-.+ .-|..|..+.+.|++++....+ .++..|++.|.
T Consensus 218 ~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~------qG~KeVTLLGQ 274 (552)
T KOG2492|consen 218 SSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAE------QGVKEVTLLGQ 274 (552)
T ss_pred ccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHhh------cCceeeeeecc
Confidence 45788899999999999999976 3456777888899999876433 37788888884
No 166
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=68.77 E-value=35 Score=40.38 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=64.0
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhc----CCeEEEEeeCCCCHHHH
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNE----SNCALAVSLNATTDEVR 338 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~----~d~~LaISL~a~~~e~r 338 (477)
++| || +++.++|+.+.+... +.-|.|.|.+.. +.+ +++-++ .++-+ |.+++++=.-
T Consensus 552 VfG-G~-----~~L~~~I~~~~~~~~----p~~I~V~tTc~~eiIGDDi~~vi~~~~~~~~~~~~~pv-i~v~tpgF~G- 619 (917)
T PRK14477 552 IFG-GW-----ENLKQGILRVIEKFK----PKVIGVMTTGLTETMGDDVRSAIVQFREEHPELDDVPV-VWASTPDYCG- 619 (917)
T ss_pred EEC-cH-----HHHHHHHHHHHHhcC----CCEEEEECCchHhhhhcCHHHHHHHHHhhccccCCCeE-EEeeCCCCcc-
Confidence 447 77 778888887665433 335777777653 232 333322 12322 5555543110
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 339 NWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 339 ~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
....+ ++..++++-+++.. ...+..-.+.+|+|.|-++.|+++|.+++..++.+++++|
T Consensus 620 s~~~G------~~~a~~aiv~~~~~-~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~vp 678 (917)
T PRK14477 620 SLQEG------YAAAVEAIVATLPE-PGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVVVP 678 (917)
T ss_pred CHHHH------HHHHHHHHHHHhcc-ccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEEec
Confidence 01111 34445444332322 1111112244678888778899999999999999998887
No 167
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=66.72 E-value=51 Score=35.18 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=61.5
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhc----CCeEEEEeeCCCCHH
Q 011810 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNE----SNCALAVSLNATTDE 336 (477)
Q Consensus 269 IvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~----~d~~LaISL~a~~~e 336 (477)
+| +| || +++.++|+.+.+... ++-|.|.|..+. +.+ +++-++ .++.+ +-++.+.=.
T Consensus 61 ~V-~G-g~-----~~L~~~i~~~~~~~~----p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~v-i~v~tpgf~ 128 (428)
T cd01965 61 AV-FG-GE-----DNLIEALKNLLSRYK----PDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPV-VYASTPSFK 128 (428)
T ss_pred ee-EC-cH-----HHHHHHHHHHHHhcC----CCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeE-EEeeCCCCC
Confidence 44 48 76 677788877665432 334666666542 333 333331 33332 344443211
Q ss_pred HHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 337 VRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 337 ~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
- ....| ++..++++-+.+.......-.-.+.+|.|.+....++.+|.++++.++.+++.++
T Consensus 129 g-~~~~G------~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~ 189 (428)
T cd01965 129 G-SHETG------YDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILP 189 (428)
T ss_pred C-cHHHH------HHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEec
Confidence 0 01112 3445555543222211001112235677777666678999999999998888876
No 168
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=66.68 E-value=42 Score=36.41 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=24.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 374 VMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 374 vLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
-+|.+.+ ++.|+++|.++|+.++.+++.++
T Consensus 173 Nlig~~~-~~~D~~elk~lL~~~Gl~v~~l~ 202 (461)
T TIGR02931 173 NLITGWV-NPGDVKELKHLLEEMDIEANVLF 202 (461)
T ss_pred EEECCCC-ChhhHHHHHHHHHHcCCceEEee
Confidence 3566664 47899999999999999988776
No 169
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=64.84 E-value=42 Score=36.38 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=62.5
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhcC----CeEEEEeeCCCCHH
Q 011810 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNES----NCALAVSLNATTDE 336 (477)
Q Consensus 269 IvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~~----d~~LaISL~a~~~e 336 (477)
+|| | || +++.++|+.+.+... ++-|.|.|.++. +.+ +++-++. +.-+ +.++++.-.
T Consensus 72 ~Vf-G-g~-----~~L~~aI~~~~~~~~----P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pv-i~v~tpgF~ 139 (455)
T PRK14476 72 TIL-G-GD-----ENVEEAILNICKKAK----PKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPI-VYVSTPDFK 139 (455)
T ss_pred eEe-C-CH-----HHHHHHHHHHHHhhC----CCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeE-EEecCCCCC
Confidence 444 8 77 778888887655432 345777777752 222 2232221 2222 455555421
Q ss_pred HHhhHcCCCCCCcHHHHHHHHHHHHHhh--cCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 337 VRNWIMPINRKYKLGLLIETLREELHFK--NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 337 ~r~~I~pi~~~~~le~ile~l~~~l~~~--~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
- .... .++..++++-+.+... ......-.+.+|.|.|-++.|+++|.++++.++.+++++|
T Consensus 140 g-~~~~------G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~lp 202 (455)
T PRK14476 140 G-ALED------GWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPIILP 202 (455)
T ss_pred C-cHHH------HHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEEec
Confidence 1 0011 1344444443322221 0111111234677776667889999999999998888776
No 170
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=64.19 E-value=42 Score=36.02 Aligned_cols=116 Identities=14% Similarity=0.200 Sum_probs=59.1
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch----HHHHHHH----hcC----CeEEEEeeCCCCHHHH
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQFL----NES----NCALAVSLNATTDEVR 338 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~----p~i~~L~----~~~----d~~LaISL~a~~~e~r 338 (477)
++| || +.+.++|+.+.+... +.-|.|.|..+. +.+..++ ++. +..+ +-++.+.=.-
T Consensus 66 V~G-g~-----~~L~~ai~~~~~~~~----p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~v-i~v~tpgf~g- 133 (435)
T cd01974 66 VFG-GQ-----NNLIDGLKNAYAVYK----PDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPV-PFANTPSFVG- 133 (435)
T ss_pred EEC-cH-----HHHHHHHHHHHHhcC----CCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeE-EEecCCCCcc-
Confidence 457 76 678888887766543 234777777653 2333332 221 2222 4444332100
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhcC-CeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 339 NWIMPINRKYKLGLLIETLREELHFKNN-YKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 339 ~~I~pi~~~~~le~ile~l~~~l~~~~~-~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
.... .++..++++-+++..... .+-.-.+.+|+|++...+++.+|.++++.++.+++++|
T Consensus 134 s~~~------G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~~~ 194 (435)
T cd01974 134 SHIT------GYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTILP 194 (435)
T ss_pred CHHH------HHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEEec
Confidence 0011 134455555432222110 01111234677776443359999999999998888754
No 171
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=63.35 E-value=57 Score=36.08 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=63.5
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch----HHHHHHH----hcC----CeEEEEeeCCCCHH
Q 011810 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQFL----NES----NCALAVSLNATTDE 336 (477)
Q Consensus 269 IvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~----p~i~~L~----~~~----d~~LaISL~a~~~e 336 (477)
+|| | |+ +++.+.|+.+.+... ++-|.|.|..+. +.+..++ ++. ++-+ +-++++.=.
T Consensus 122 aVf-G-G~-----~~L~e~I~~~~~~y~----P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~~~pV-i~v~TpgF~ 189 (515)
T TIGR01286 122 AVF-G-GL-----KNMVDGLQNCYALYK----PKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPDDFPV-PFAHTPSFV 189 (515)
T ss_pred eee-C-cH-----HHHHHHHHHHHHhcC----CCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCCCCce-EEeeCCCCc
Confidence 444 7 76 678888887655433 345888887753 2233332 222 1212 344443211
Q ss_pred HHhhHcCCCCCCcHHHHHHHHHHHHHhhc----CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 337 VRNWIMPINRKYKLGLLIETLREELHFKN----NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 337 ~r~~I~pi~~~~~le~ile~l~~~l~~~~----~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
- ..+.+ ++..++++-+++.... .....-.+-+|+|++..+.|+++|.++++.++..++++|
T Consensus 190 G-s~~~G------yd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~l~ 254 (515)
T TIGR01286 190 G-SHITG------YDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTLLS 254 (515)
T ss_pred c-cHHHH------HHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEEcc
Confidence 0 11122 3445555544332211 011111233578987668899999999999999998876
No 172
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=58.93 E-value=1.9e+02 Score=28.56 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHH
Q 011810 313 PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGL 392 (477)
Q Consensus 313 p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~l 392 (477)
..+..+++.+...+.+...+.. .+.++++.++ +.|.++..-.++-|+ ...+.++.+...
T Consensus 82 ~~i~~~~~aGad~It~H~Ea~~--------------~~~~~l~~Ik-----~~g~~~kaGlalnP~--Tp~~~i~~~l~~ 140 (228)
T PRK08091 82 EVAKACVAAGADIVTLQVEQTH--------------DLALTIEWLA-----KQKTTVLIGLCLCPE--TPISLLEPYLDQ 140 (228)
T ss_pred HHHHHHHHhCCCEEEEcccCcc--------------cHHHHHHHHH-----HCCCCceEEEEECCC--CCHHHHHHHHhh
Confidence 3567777777444334444321 1234455444 346533444455565 345555555444
Q ss_pred HhcCCCeEEEEeecCCC-CCCCCCCcHHHHHHHHHHHHhCCCeEEe
Q 011810 393 VQGIPCKINLISFNPHC-GSQFTPTTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 393 l~~l~~~VnLipynp~~-~~~~~~ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
+. .|-++..+|.. +..|.+...+.+.++++.+.++|+.+.+
T Consensus 141 vD----~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~I 182 (228)
T PRK08091 141 ID----LIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLI 182 (228)
T ss_pred cC----EEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceE
Confidence 33 67888899974 4568888889999999999998876444
No 173
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=56.51 E-value=1.4e+02 Score=31.96 Aligned_cols=113 Identities=14% Similarity=0.262 Sum_probs=60.1
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch----HHHHH----HHhc---CCeEEEEeeCCCCHHHHh
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQ----FLNE---SNCALAVSLNATTDEVRN 339 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~----p~i~~----L~~~---~d~~LaISL~a~~~e~r~ 339 (477)
++| || +.+.++|+.+.+... ++-|.|.|..+. +.++. +-++ .+..+ |.++++.=. ..
T Consensus 65 VfG-g~-----~kL~~aI~~~~~~~~----P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~v-i~v~t~gF~-g~ 132 (429)
T cd03466 65 VYG-GE-----KNLKKGLKNVIEQYN----PEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKI-IPASTPGYG-GT 132 (429)
T ss_pred EEC-cH-----HHHHHHHHHHHHhcC----CCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcE-EEEECCCCc-cc
Confidence 357 76 678888887665533 345777777653 22332 3222 22222 444443211 01
Q ss_pred hHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 340 WIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 340 ~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
... .++..++++-+.+...... .-.+.+|.|.+ ++.|++++.++++.++.++++.|
T Consensus 133 ~~~------G~~~a~~al~~~~~~~~~~--~~~VNlig~~~-~~~D~~ei~~lL~~~Gl~~~~~~ 188 (429)
T cd03466 133 HVE------GYDTAVRSIVKNIAVDPDK--IEKINVIAGMM-SPADIREIKEILREFGIEYILLP 188 (429)
T ss_pred HHH------HHHHHHHHHHHHhccCCCC--CCcEEEECCCC-ChhHHHHHHHHHHHcCCCeEEec
Confidence 111 1344555544322221111 12234677775 57899999999999998887655
No 174
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=55.27 E-value=1.7e+02 Score=29.74 Aligned_cols=106 Identities=17% Similarity=0.276 Sum_probs=58.0
Q ss_pred eEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcC-CeEEEEE--EEeCCCCCCHHHHHHH---HHHHhcC-
Q 011810 324 CALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNN-YKVLFEY--VMLAGVNDSFDDAKRL---IGLVQGI- 396 (477)
Q Consensus 324 ~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~-~~V~iey--vLI~GvNDs~ed~~~L---a~ll~~l- 396 (477)
..+.+.|.+...+. -| +-.+.+++++++++ +.+.-| .+|..+| +++-+.-+-..+++.+ ++.|++.
T Consensus 75 ~yfq~Tit~Y~~~l----Ep--~vP~~~~~i~~f~~-Ls~~iG~~rViWRYDPIil~~~~~~~~h~~~F~~la~~L~g~t 147 (266)
T PF08902_consen 75 YYFQFTITGYGKDL----EP--NVPPKDERIETFRE-LSERIGPERVIWRYDPIILTDKYTVDYHLEAFERLAEALAGYT 147 (266)
T ss_pred eEEEEEeCCCCccc----cC--CCCCHHHHHHHHHH-HHHHHCCCcEEEecCCEeECCCCCHHHHHHHHHHHHHHHhccC
Confidence 34456666554431 12 11246788999988 565554 5688887 5555444444455554 4444443
Q ss_pred -CCeEEEEeecCC-----CC--CCCCCCcHHHHHHHHH----HHHhCCCeEE
Q 011810 397 -PCKINLISFNPH-----CG--SQFTPTTDEKMIEFRN----ILAGAGCTVF 436 (477)
Q Consensus 397 -~~~VnLipynp~-----~~--~~~~~ps~e~l~~f~~----~L~~~Gi~v~ 436 (477)
.+.|.++...+. .. ..+..++.+++.++.+ +.+++|+.+.
T Consensus 148 ~~~viSF~D~Y~k~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ia~~~g~~l~ 199 (266)
T PF08902_consen 148 DRCVISFLDLYRKVRRNLARLGFRIREPSEEEKRELAKRLAEIAKKYGMTLY 199 (266)
T ss_pred CEEEEEeeeccHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 133444432221 11 1356888888776654 4577888653
No 175
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.39 E-value=96 Score=34.19 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCC---------------------
Q 011810 353 LIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS--------------------- 411 (477)
Q Consensus 353 ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~--------------------- 411 (477)
+++-+.. .++.+++..|.++=+.||--| ..+.+++-||-.-+.+|-+...+++...
T Consensus 365 lLRdI~s--ar~~krPYVi~fvGVNGVGKS-TNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~ 441 (587)
T KOG0781|consen 365 LLRDIMS--ARRRKRPYVISFVGVNGVGKS-TNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVE 441 (587)
T ss_pred HHHHHHH--HHhcCCCeEEEEEeecCcccc-chHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhH
Confidence 4555554 355667888887777887766 4788899999887778877777665321
Q ss_pred ----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCCcccccccccccCCCCCCCccCChhHHHH
Q 011810 412 ----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAIQAPLLRVPEKFQT 471 (477)
Q Consensus 412 ----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~~~~~~~~~~~~~~~~~ 471 (477)
+|-.-..--..+..+..+..|+.|.+-.+.|+ ....+|||+++++|-+
T Consensus 442 lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR------------~~~~~~lm~~l~k~~~ 493 (587)
T KOG0781|consen 442 LFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGR------------MHNNAPLMTSLAKLIK 493 (587)
T ss_pred HHhhhcCCChHHHHHHHHHHHHhcCCCEEEEecccc------------ccCChhHHHHHHHHHh
Confidence 01111111122223344455666665555553 4568899999988865
No 176
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=53.67 E-value=3e+02 Score=29.19 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=58.7
Q ss_pred EEEEcCCc---hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCC-
Q 011810 304 VTVSTSGL---VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGV- 379 (477)
Q Consensus 304 ItvsTNGi---~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~Gv- 379 (477)
|+|.|--- .+.+.+++..+-..|-|.+.+.-++.-+ ..|+.+++..+-+... +.+.+|.+|... ++|++
T Consensus 225 iTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVAR---DTNRGHTV~aVce~F~--laKDaG~KvV~H--MMPdLP 297 (554)
T KOG2535|consen 225 ITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVAR---DTNRGHTVKAVCESFH--LAKDAGFKVVAH--MMPDLP 297 (554)
T ss_pred EEeecCcccchhhhHHHHHhcCCceEEeccchhHHHhhh---cccCCccHHHHHHHhh--hhhccCceeehh--hCCCCC
Confidence 67777642 3678888888866777888877655432 4677888888888887 467788777654 44442
Q ss_pred C-CCHHHHHHHHHHHhc
Q 011810 380 N-DSFDDAKRLIGLVQG 395 (477)
Q Consensus 380 N-Ds~ed~~~La~ll~~ 395 (477)
| .-+.|++.+.+++..
T Consensus 298 NVg~eRDieqF~E~Fen 314 (554)
T KOG2535|consen 298 NVGMERDIEQFKEYFEN 314 (554)
T ss_pred CCchhhhHHHHHHHhcC
Confidence 2 235578888888875
No 177
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=52.94 E-value=80 Score=33.97 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=61.5
Q ss_pred EecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhc----CCeEEEEeeCCCCHHHH
Q 011810 271 FMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNE----SNCALAVSLNATTDEVR 338 (477)
Q Consensus 271 F~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~----~d~~LaISL~a~~~e~r 338 (477)
++| || +++.++|+.+.+... ++-|.|.|.++. +.+ +++-++ .++-+ +.++.+.-.-
T Consensus 72 VfG-g~-----~~L~~~I~~~~~~~~----P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~~~~~pv-i~v~tpgf~g- 139 (432)
T TIGR01285 72 ILG-GD-----EHIEEAIDTLCQRNK----PKAIGLLSTGLTETRGEDIARVVRQFREKHPQHKGTAV-VTVNTPDFKG- 139 (432)
T ss_pred EEC-cH-----HHHHHHHHHHHHhcC----CCEEEEeCCCcccccccCHHHHHHHHHhhcccccCCeE-EEecCCCcCC-
Confidence 347 77 677888887665432 345777777652 233 233222 12332 5566554221
Q ss_pred hhHcCCCCCCcHHHHHHHHHHHHHhhc--CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 339 NWIMPINRKYKLGLLIETLREELHFKN--NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 339 ~~I~pi~~~~~le~ile~l~~~l~~~~--~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
.... -++..++++-+++.... .....-..-++.|.|-+..|+++|.++++.++.+++++|
T Consensus 140 ~~~~------G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~~l~ 201 (432)
T TIGR01285 140 SLED------GYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPIILP 201 (432)
T ss_pred chHH------HHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceEEec
Confidence 1111 23455555533232211 000011234567776666789999999999988887765
No 178
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=52.04 E-value=1.1e+02 Score=28.26 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHhcCC-CeEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 382 SFDDAKRLIGLVQGIP-CKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 382 s~ed~~~La~ll~~l~-~~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
+++++.++++ .+++ ..||+-..+..++. ..-..++++++.|++...+ |+.++++....+
T Consensus 84 ~~~da~~l~~--~g~~i~~iniG~~~~~~g~~~v~~~v~l~~~e~~~l~~l~~~-Gv~v~~q~vP~d 147 (151)
T TIGR00854 84 NPQDVLTLVE--GGVPIKTVNVGGMHFSNGKKQITKKVSVDDQDITAFRFLKQR-GVKLFLRDVPSD 147 (151)
T ss_pred CHHHHHHHHH--cCCCCCEEEECCcccCCCCEEEecceeeCHHHHHHHHHHHHc-CCEEEEEECcCC
Confidence 6788877765 2443 26777665443332 2345678999999877765 999999876654
No 179
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=50.98 E-value=80 Score=29.00 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCC----CCCCCcHHHHHHH
Q 011810 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS----QFTPTTDEKMIEF 424 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~----~~~~ps~e~l~~f 424 (477)
+.++..+.+++ ....+.++. ++.+ +++++.+|++..-++. .+|+-+....++. ..-..++++++.|
T Consensus 60 sv~~a~~~l~~--~~~~~~~v~---ii~k----~~~d~~~l~~~g~~i~-~iNvG~~~~~~g~~~i~~~v~l~~ee~~~l 129 (151)
T PF03830_consen 60 SVEEAIEKLKK--PEYSKKRVL---IIVK----SPEDALRLVEAGVKIK-EINVGNMSKKPGRKKITKNVYLSEEEIEAL 129 (151)
T ss_dssp -HHHHHHHHCG--GGGTTEEEE---EEES----SHHHHHHHHHTT---S-EEEEEEB---TTSEEESSSBEE-HHHHHHH
T ss_pred EHHHHHHHHHh--cccCCceEE---EEEC----CHHHHHHHHhcCCCCC-EEEECCCCCCCccceeCCeEEECHHHHHHH
Confidence 45666666664 122333443 2344 6888888887443332 6888776555443 2334568999988
Q ss_pred HHHHHhCCCeEEecCCCCC
Q 011810 425 RNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 425 ~~~L~~~Gi~v~vR~s~G~ 443 (477)
++...+ |+.++++....+
T Consensus 130 ~~l~~~-Gv~i~~q~vP~~ 147 (151)
T PF03830_consen 130 KELADK-GVEIEFQMVPDD 147 (151)
T ss_dssp HHHHHT-T-EEEE-SSTTS
T ss_pred HHHHHC-CCEEEEEECcCC
Confidence 776665 999999987654
No 180
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=50.00 E-value=40 Score=38.16 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHhcCCC-eEEEEeecCCCCC--------C-CCC----CcHHHHHHHHHHHHhCCCeEEec--CCCCCcc
Q 011810 382 SFDDAKRLIGLVQGIPC-KINLISFNPHCGS--------Q-FTP----TTDEKMIEFRNILAGAGCTVFLR--LSRGDDQ 445 (477)
Q Consensus 382 s~ed~~~La~ll~~l~~-~VnLipynp~~~~--------~-~~~----ps~e~l~~f~~~L~~~Gi~v~vR--~s~G~di 445 (477)
..|-+.++..++++++. +|.|+|+..+++. . |.+ -+++.+++|.+.+.+.||-|.+- ..+=..-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d 242 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD 242 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC
Confidence 56778889999999996 8999999876532 1 222 23899999999999999998763 3333334
Q ss_pred cccccccccC
Q 011810 446 MAACGQLGNP 455 (477)
Q Consensus 446 ~aaCGQL~~~ 455 (477)
.-+|.+....
T Consensus 243 ~~~L~~fdg~ 252 (628)
T COG0296 243 GNYLARFDGT 252 (628)
T ss_pred cchhhhcCCc
Confidence 4577776544
No 181
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=49.55 E-value=1.8e+02 Score=30.52 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=57.4
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhcCCeEEEEeeCCCCHHHHhh
Q 011810 269 VVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNESNCALAVSLNATTDEVRNW 340 (477)
Q Consensus 269 IvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~~d~~LaISL~a~~~e~r~~ 340 (477)
+| +| || +.+.++|+.+.+... ++-|.|.|..+. +.+ +++-++.++-+ +.++.+.-.
T Consensus 67 ~V-~G-g~-----~~L~~~i~~~~~~~~----P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~v-i~v~t~gf~---- 130 (406)
T cd01967 67 IV-FG-GE-----KKLKKAIKEAYERFP----PKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPV-IPVNCEGFR---- 130 (406)
T ss_pred ee-eC-cH-----HHHHHHHHHHHHhCC----CCEEEEECCCchhhhccCHHHHHHHHHHhhCCCE-EEEeCCCee----
Confidence 44 47 76 577777776655432 334666666542 222 23332322322 344433211
Q ss_pred HcCCCCCCcHHHHHHHHHHHHHhhc--CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEE
Q 011810 341 IMPINRKYKLGLLIETLREELHFKN--NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403 (477)
Q Consensus 341 I~pi~~~~~le~ile~l~~~l~~~~--~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLi 403 (477)
+.+....++..++++-+++.... .....-.+.+|.++|- ..++.+|.++|+.++.++|.+
T Consensus 131 --g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gi~~~~~ 192 (406)
T cd01967 131 --GVSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNI-GGDAWVIKPLLEELGIRVNAT 192 (406)
T ss_pred --CCcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEecccc-chhHHHHHHHHHHcCCEEEEE
Confidence 10111124556666554332211 0011122345555553 568899999999998887753
No 182
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=49.17 E-value=20 Score=24.22 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=12.9
Q ss_pred eEEEEcCCchHHHHHHHh
Q 011810 303 KVTVSTSGLVPQLKQFLN 320 (477)
Q Consensus 303 ~ItvsTNGi~p~i~~L~~ 320 (477)
.|.|||||.-|.+.+++.
T Consensus 6 qI~ISTnG~sP~la~~iR 23 (30)
T PF14824_consen 6 QIAISTNGKSPRLARLIR 23 (30)
T ss_dssp EEEEEESSS-HHHHHHHH
T ss_pred EEEEECCCCChHHHHHHH
Confidence 599999998877655543
No 183
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=48.05 E-value=1.4e+02 Score=27.49 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHhcCC-CeEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 382 SFDDAKRLIGLVQGIP-CKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 382 s~ed~~~La~ll~~l~-~~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
+++++.+|.+. +++ ..||+-..+..++. ..-..++++++.|+++.. .|++++++....+
T Consensus 83 ~~~~~~~l~~~--g~~i~~vnvG~~~~~~~~~~v~~~v~l~~~e~~~lk~l~~-~Gv~v~~q~vP~d 146 (151)
T cd00001 83 NPQDVLRLVEG--GVPIKTINVGNMAFRPGKVQITKAVSLDEEDVAAFKELAQ-KGVKVEIQMVPND 146 (151)
T ss_pred CHHHHHHHHHc--CCCCCEEEECCCcCCCCCEEEecceecCHHHHHHHHHHHH-cCCEEEEEECcCC
Confidence 67888877652 443 26777666544332 234567899998877665 5999999877654
No 184
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=45.76 E-value=3.5e+02 Score=29.08 Aligned_cols=122 Identities=24% Similarity=0.256 Sum_probs=71.0
Q ss_pred EEEeeCCCCHHHHhh--HcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEE
Q 011810 326 LAVSLNATTDEVRNW--IMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLI 403 (477)
Q Consensus 326 LaISL~a~~~e~r~~--I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLi 403 (477)
+++.||.+..|.++. +.--...++-++.++-+.+ +..++. -+.+| .++ +++|.+.++.+.+.++.+|.|.
T Consensus 236 i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~-Lv~~Yp-ivsiE----Dpl--~E~Dweg~~~lt~~~g~kvqiv 307 (423)
T COG0148 236 IALALDVAASEFYKDGKYVLEGESLTSEELIEYYLE-LVKKYP-IVSIE----DPL--SEDDWEGFAELTKRLGDKVQIV 307 (423)
T ss_pred eeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHH-HHHhCC-EEEEc----CCC--CchhHHHHHHHHHhhCCeEEEE
Confidence 356666666666653 2212224455677777776 444432 13333 443 3557788888888887777665
Q ss_pred e---e--cCCC---C-------C----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCCccc---------ccccccccC
Q 011810 404 S---F--NPHC---G-------S----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQM---------AACGQLGNP 455 (477)
Q Consensus 404 p---y--np~~---~-------~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~di~---------aaCGQL~~~ 455 (477)
- | ||.. + . ..+--+--+..++.+..+++|+.+.|-+..|+.-+ -.|||.+.-
T Consensus 308 GDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 308 GDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred CCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 4 1 3210 0 0 11222344555677888999999988877776433 389998654
No 185
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=44.70 E-value=1.7e+02 Score=26.67 Aligned_cols=68 Identities=25% Similarity=0.297 Sum_probs=42.3
Q ss_pred CeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHh----cCCeEEEEeeCCCCHHHH
Q 011810 265 SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN----ESNCALAVSLNATTDEVR 338 (477)
Q Consensus 265 ~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~----~~d~~LaISL~a~~~e~r 338 (477)
++++|+|.|||--.+-.+.+.+++..... .++ ++.+.+|--...+.++.. ..+..+.+|--+.+.|+-
T Consensus 19 ~~~~iv~~GiGGS~lg~~~~~~~~~~~~~-~~~-----~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG~T~Et~ 90 (158)
T cd05015 19 KITDVVVIGIGGSDLGPRAVYEALKPYFK-GGL-----RLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLETL 90 (158)
T ss_pred CCCEEEEEecCccHHHHHHHHHHHHhhcc-CCc-----eEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCcCCHHHH
Confidence 68999999999977766666666653211 233 366666643333333332 345677788888887754
No 186
>PRK00035 hemH ferrochelatase; Reviewed
Probab=41.72 E-value=4e+02 Score=27.27 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=59.6
Q ss_pred eEEEEecCCcccC-------CHHHHHHHHHHHHHhcCCCCCCCeEEEEc-CCc----hH----HHHHHHhcC--CeEE-E
Q 011810 267 TNVVFMGMGEPLH-------NVENVIKAANIMVHEQGLHFSPRKVTVST-SGL----VP----QLKQFLNES--NCAL-A 327 (477)
Q Consensus 267 ~nIvF~GmGEPLl-------n~d~vi~~i~~l~~~~Gl~i~~r~ItvsT-NGi----~p----~i~~L~~~~--d~~L-a 327 (477)
+.++|||-|=|.- ....+.+..+.+.+..|+......++..+ .|. -| .+.++.+.+ .+.+ -
T Consensus 190 ~~llfs~HG~P~~~~~~gd~Y~~~~~~t~~~l~~~l~~~~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P 269 (333)
T PRK00035 190 DRLLFSAHGLPQRYIDKGDPYQQQCEETARLLAEALGLPDEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVP 269 (333)
T ss_pred cEEEEecCCCchHHhhcCCChHHHHHHHHHHHHHHhCCCCCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEEC
Confidence 5799999773332 23456666776667766532333455554 242 13 455666655 2221 1
Q ss_pred EeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc
Q 011810 328 VSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395 (477)
Q Consensus 328 ISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~ 395 (477)
+++=+-.-|+ +.++-...++ ...+.|.. ++..++++||++.-++.|++.+++
T Consensus 270 ~~Fv~D~lEt------------l~ei~~e~~~-~~~~~G~~---~~~~~~~ln~~~~~i~~l~~~v~~ 321 (333)
T PRK00035 270 PGFVSDHLET------------LEEIDIEYRE-IAEEAGGE---EFRRIPCLNDSPEFIEALADLVRE 321 (333)
T ss_pred CeeeccchhH------------HHHHHHHHHH-HHHHcCCc---eEEECCCCCCCHHHHHHHHHHHHH
Confidence 1111111111 1222222333 23444442 467889999999999999888875
No 187
>smart00642 Aamy Alpha-amylase domain.
Probab=41.00 E-value=1.2e+02 Score=28.14 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCC-eEEEEeecCCCC----------CCCC-----CCcHHHHHHHHHHHHhCCCeEEe
Q 011810 384 DDAKRLIGLVQGIPC-KINLISFNPHCG----------SQFT-----PTTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 384 ed~~~La~ll~~l~~-~VnLipynp~~~----------~~~~-----~ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
+.+.+-...++++++ .|.|.|..+... .+|. --+.++++++.+.+.++|+.|.+
T Consensus 19 ~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 19 QGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 333333346666665 566666543321 1121 12468899999999999998754
No 188
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=39.19 E-value=3.5e+02 Score=28.93 Aligned_cols=112 Identities=12% Similarity=0.155 Sum_probs=56.8
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch----HHHHHHH---hcCCe-EEEEeeCCCCHHHHhhHcC
Q 011810 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQFL---NESNC-ALAVSLNATTDEVRNWIMP 343 (477)
Q Consensus 272 ~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~----p~i~~L~---~~~d~-~LaISL~a~~~e~r~~I~p 343 (477)
+| || +++.++|+.+.+... ++-|.|.|..+. +.++.++ ++.+. .+.++..+.....+
T Consensus 68 ~G-g~-----~kL~~~I~~~~~~~~----p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~~----- 132 (427)
T cd01971 68 FG-GE-----DRLRELIKSTLSIID----ADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNY----- 132 (427)
T ss_pred eC-CH-----HHHHHHHHHHHHhCC----CCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCcCcccc-----
Confidence 57 76 678888887655432 345777776653 2233222 33322 33344443322111
Q ss_pred CCCCCcHHHHHHHHHHHHHhhc--CCeEEEEEEEeCCCC---C-CHHHHHHHHHHHhcCCCeEEEEe
Q 011810 344 INRKYKLGLLIETLREELHFKN--NYKVLFEYVMLAGVN---D-SFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 344 i~~~~~le~ile~l~~~l~~~~--~~~V~ieyvLI~GvN---D-s~ed~~~La~ll~~l~~~VnLip 404 (477)
..++..++++-+.+..+. ..+-.++ +|.+++ . ...|+++|.++|+.++.+++.+.
T Consensus 133 ----~G~~~a~~al~~~~~~~~~~~~~~~VN--iiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~ 193 (427)
T cd01971 133 ----AGHEIVLKAIIDQYVGQSEEKEPGLVN--LWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILF 193 (427)
T ss_pred ----cHHHHHHHHHHHHhccCCCCCCCCeEE--EEeccCCccccccccHHHHHHHHHHCCCeEEEEE
Confidence 123455555543222211 1122233 343332 1 23688999999999998887664
No 189
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=38.54 E-value=2.4e+02 Score=27.78 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEEeC-CCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCCCCCc-HHHHHHHHHH
Q 011810 351 GLLIETLREELHFKNNYKVLFEYVMLA-GVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQFTPTT-DEKMIEFRNI 427 (477)
Q Consensus 351 e~ile~l~~~l~~~~~~~V~ieyvLI~-GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~~~ps-~e~l~~f~~~ 427 (477)
+.+.++++. .++.+.++.+=-++-+ ||.-..+++..|+++++..++ +|.+-.|.. |.+..|-+ ..-++++.+.
T Consensus 14 ~~l~~~~~~--~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~D--GRDt~P~S~~~yl~~l~~~ 89 (223)
T PF06415_consen 14 PVLLEAIEH--AKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTD--GRDTPPKSALKYLEELEEK 89 (223)
T ss_dssp HHHHHHHHH--HCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE---SSSS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecC--CCCCCcchHHHHHHHHHHH
Confidence 455666664 4667778888777776 598999999999999998875 355444433 44444443 5778899999
Q ss_pred HHhCCC
Q 011810 428 LAGAGC 433 (477)
Q Consensus 428 L~~~Gi 433 (477)
+.+.|.
T Consensus 90 l~~~~~ 95 (223)
T PF06415_consen 90 LAEIGI 95 (223)
T ss_dssp HHHHTC
T ss_pred HHhhCC
Confidence 988654
No 190
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=37.96 E-value=4.7e+02 Score=27.25 Aligned_cols=171 Identities=15% Similarity=0.082 Sum_probs=79.7
Q ss_pred CeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHH---hcCCeEEEEeeCCCCHHHHhhH
Q 011810 265 SITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL---NESNCALAVSLNATTDEVRNWI 341 (477)
Q Consensus 265 ~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~---~~~d~~LaISL~a~~~e~r~~I 341 (477)
.-..|+|+| |.-..+.+..+++ .|+. +++++ ..+++++. ....+.|+|..+.... ....+
T Consensus 80 ~~~~Iif~g---p~K~~~~l~~a~~-----~gv~-----i~~Ds---~~El~~i~~~~~~~~v~lRi~~~~~~~-~~~~~ 142 (368)
T cd06840 80 DPRRVLFTP---NFAARSEYEQALE-----LGVN-----VTVDN---LHPLREWPELFRGREVILRIDPGQGEG-HHKHV 142 (368)
T ss_pred CcceEEEcC---CCCCHHHHHHHHH-----CCCE-----EEECC---HHHHHHHHHhcccCCEEEEECCCCCCC-CCCce
Confidence 346799999 7766556655544 3542 44432 34444443 3335666665542211 11111
Q ss_pred cC---CCC-CCcHHHHHHHHHHHHHhhcCCeE-EEEEEEeCCCCCCHHHHHHHHHHHhcCC---CeEEEEeec---CCCC
Q 011810 342 MP---INR-KYKLGLLIETLREELHFKNNYKV-LFEYVMLAGVNDSFDDAKRLIGLVQGIP---CKINLISFN---PHCG 410 (477)
Q Consensus 342 ~p---i~~-~~~le~ile~l~~~l~~~~~~~V-~ieyvLI~GvNDs~ed~~~La~ll~~l~---~~VnLipyn---p~~~ 410 (477)
.. ..+ ..+.+++.+.++. .+..+.++ -+.+-+--++.| .+...++.+.+..+. ..+..+-+- |.+.
T Consensus 143 ~~~~~~skFG~~~~~~~~~l~~--~~~~~l~l~GlhfH~GS~~~~-~~~~~~~~~~~~~l~~~~~~~~~idiGGGf~~~y 219 (368)
T cd06840 143 RTGGPESKFGLDVDELDEARDL--AKKAGIIVIGLHAHSGSGVED-TDHWARHGDYLASLARHFPAVRILNVGGGLGIPE 219 (368)
T ss_pred ecCCCCCCCCCCHHHHHHHHHH--HHhCCCcEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHhcCCCCEEEecCcccCCC
Confidence 11 111 2257777777764 34444333 333333233433 445555544443321 112222110 1110
Q ss_pred -CCCCCCcHHHHHHHHHHHHhCCCeEEecCCCCCcccccccccccC
Q 011810 411 -SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLGNP 455 (477)
Q Consensus 411 -~~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~ 455 (477)
..-.+++.+.+.+..+.+.+.--.+++--+.|+-+.+.||-|..+
T Consensus 220 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~EPGR~lva~ag~lvt~ 265 (368)
T cd06840 220 APGGRPIDLDALDAALAAAKAAHPQYQLWMEPGRFIVAESGVLLAR 265 (368)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCcEEEEecCceeeecceEEEEE
Confidence 011234454444333333222124677779999999999998544
No 191
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=36.58 E-value=4.6e+02 Score=26.40 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEe--cCCcccCCHHHHHHHHHHHHHh-cCCCCCCCeEEEEcCCc-h----H
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFM--GMGEPLHNVENVIKAANIMVHE-QGLHFSPRKVTVSTSGL-V----P 313 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~--GmGEPLln~d~vi~~i~~l~~~-~Gl~i~~r~ItvsTNGi-~----p 313 (477)
.+|++||+++.....+. +..+-++..= =-|.|.+.++...+.++.+.+. -++ -+.++|.|. . .
T Consensus 22 P~tpeEia~~A~~c~~A----GAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~-----iv~~Ttg~~~~~~~~~ 92 (272)
T PF05853_consen 22 PITPEEIAADAVACYEA----GAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDL-----IVQPTTGGGGGPDPEE 92 (272)
T ss_dssp --SHHHHHHHHHHHHHH----TESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTS-----EEEEESSTTTTSGHHH
T ss_pred CCCHHHHHHHHHHHHHc----CCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCe-----EEEeCCCCCCCCCHHH
Confidence 47999999999877542 2234344443 1288999988888888877766 455 378888773 1 1
Q ss_pred HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHH
Q 011810 314 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLV 393 (477)
Q Consensus 314 ~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll 393 (477)
.+.-+.........+++.+.+-..++.+. ..+.+.+.+.++. .++.|.+..++ +. +..++..+..++
T Consensus 93 R~~~v~~~~pd~asl~~gs~n~~~~~~~~----~n~~~~~~~~~~~--~~e~Gi~pe~e--v~-----d~~~l~~~~~l~ 159 (272)
T PF05853_consen 93 RLAHVEAWKPDMASLNPGSMNFGTRDRVY----INTPADARELARR--MRERGIKPEIE--VF-----DPGHLRNARRLI 159 (272)
T ss_dssp HCTHHHHH--SEEEEE-S-EEESGGCSEE-------HHHHHHHHHH--HHHTT-EEEEE--ES-----SHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEecccccccccCCcee----cCCHHHHHHHHHH--HHHcCCeEEEE--EE-----cHHHHHHHHHHH
Confidence 22222121222224555554322111111 1245666666664 35667666655 32 467888887777
Q ss_pred hc-C---CCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHh
Q 011810 394 QG-I---PCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 430 (477)
Q Consensus 394 ~~-l---~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~ 430 (477)
+. + +..+++.-=.+ .-.+++++.+..+.+.+..
T Consensus 160 ~~G~l~~p~~~~~vlG~~----~g~~~~~~~l~~~l~~l~~ 196 (272)
T PF05853_consen 160 EKGLLPGPLLVNFVLGVP----GGMPATPENLLAMLDMLPE 196 (272)
T ss_dssp HTTSS-SSEEEEEEES-T----TS--S-HHHHHHHHHHHHH
T ss_pred HCCCCCCCeEEEEcccCC----CCCCCCHHHHHHHHHhcCC
Confidence 63 3 22444443111 1237788888888887766
No 192
>PRK14057 epimerase; Provisional
Probab=36.21 E-value=4.6e+02 Score=26.36 Aligned_cols=99 Identities=11% Similarity=0.165 Sum_probs=60.2
Q ss_pred HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-------EEEEEEEeCCCCCCHHHH
Q 011810 314 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-------VLFEYVMLAGVNDSFDDA 386 (477)
Q Consensus 314 ~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-------V~ieyvLI~GvNDs~ed~ 386 (477)
.++++++.+...+.+...+.. .+.++++.+++ .|.+ +..-..+-|+ ...+.+
T Consensus 90 ~i~~~~~aGad~It~H~Ea~~--------------~~~~~l~~Ir~-----~G~k~~~~~~~~kaGlAlnP~--Tp~e~i 148 (254)
T PRK14057 90 AAQACVKAGAHCITLQAEGDI--------------HLHHTLSWLGQ-----QTVPVIGGEMPVIRGISLCPA--TPLDVI 148 (254)
T ss_pred HHHHHHHhCCCEEEEeecccc--------------CHHHHHHHHHH-----cCCCcccccccceeEEEECCC--CCHHHH
Confidence 567777777444445544431 13445555554 2321 2333345554 345555
Q ss_pred HHHHHHHhcCCCeEEEEeecCCC-CCCCCCCcHHHHHHHHHHHHhCCCeEEe
Q 011810 387 KRLIGLVQGIPCKINLISFNPHC-GSQFTPTTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 387 ~~La~ll~~l~~~VnLipynp~~-~~~~~~ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
+.+...+. .|-++..+|-. |..|.+...+.++++++.+.++|+.+.|
T Consensus 149 ~~~l~~vD----~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~I 196 (254)
T PRK14057 149 IPILSDVE----VIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKII 196 (254)
T ss_pred HHHHHhCC----EEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceE
Confidence 54444332 67888899974 5568888899999999999988866444
No 193
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.78 E-value=1.1e+02 Score=23.66 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEeecCCCCC------CCCCCcHHHHHHHHHHHHhCCCeE
Q 011810 381 DSFDDAKRLIGLVQGIPCKINLISFNPHCGS------QFTPTTDEKMIEFRNILAGAGCTV 435 (477)
Q Consensus 381 Ds~ed~~~La~ll~~l~~~VnLipynp~~~~------~~~~ps~e~l~~f~~~L~~~Gi~v 435 (477)
|.+..+.++.+.+.. +..|--+-|...... .+..++++.++++.+.|++.|+.+
T Consensus 7 dkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 7 ERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 566678888888876 554444444432211 246677899999999999999865
No 194
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=34.58 E-value=2.6e+02 Score=29.82 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=56.7
Q ss_pred ecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHHH-HHHhcCCe-EEEEeeCCCCHHHHhhHc
Q 011810 272 MGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQLK-QFLNESNC-ALAVSLNATTDEVRNWIM 342 (477)
Q Consensus 272 ~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i~-~L~~~~d~-~LaISL~a~~~e~r~~I~ 342 (477)
+| || +.|.++|+.+.+... ++-|.|.|..+. +.+. ++-++.++ .+.++..+.....+ ..
T Consensus 71 fG-g~-----~kL~~aI~~~~~~~~----P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~--~~ 138 (426)
T cd01972 71 FG-GE-----KKLEDTIKEAYSRYK----PKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHCEGFKGKHW--RS 138 (426)
T ss_pred cc-hH-----HHHHHHHHHHHHhCC----CCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCCccCCccH--hH
Confidence 57 76 677888887665432 344666665542 2332 33333332 33455444432111 11
Q ss_pred CCCCCCcHHHHHHHHHHHHHhh---cCCeEEEEEEEeCCCCC----CHHHHHHHHHHHhcCCCeEEEEe
Q 011810 343 PINRKYKLGLLIETLREELHFK---NNYKVLFEYVMLAGVND----SFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 343 pi~~~~~le~ile~l~~~l~~~---~~~~V~ieyvLI~GvND----s~ed~~~La~ll~~l~~~VnLip 404 (477)
.++..++++-+.+... ...+-. +.+|.+.|. ...|+.++.++|+.++.+|+.++
T Consensus 139 ------G~~~a~~al~~~~~~~~~~~~~~~~--VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~ 199 (426)
T cd01972 139 ------GFDAAFHGILRHLVPPQDPTKQEDS--VNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAII 199 (426)
T ss_pred ------HHHHHHHHHHHHhcCCCCCCCCCCC--EEEEccCCCccccccccHHHHHHHHHHcCCeEEEEe
Confidence 1344444444322221 111112 334555543 14688999999999988887664
No 195
>PRK07328 histidinol-phosphatase; Provisional
Probab=34.37 E-value=4.7e+02 Score=25.88 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc-------------C---CHHHHHHHHHHHHHhc-CCCCCCCeEEE
Q 011810 244 TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL-------------H---NVENVIKAANIMVHEQ-GLHFSPRKVTV 306 (477)
Q Consensus 244 t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL-------------l---n~d~vi~~i~~l~~~~-Gl~i~~r~Itv 306 (477)
+++|+++.... .+++.+.|+.-+. + + +++..++.++.+.++. ++. -.+.+
T Consensus 19 ~~ee~v~~A~~---------~Gl~~i~~TdH~~-~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~---Il~Gi 85 (269)
T PRK07328 19 TPEEYVQAARR---------AGLKEIGFTDHLP-MYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLY---VRLGI 85 (269)
T ss_pred CHHHHHHHHHH---------CCCCEEEEecCCC-CCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCe---EEEEE
Confidence 67788776653 3677777775432 2 1 2334444555455443 332 13555
Q ss_pred EcC---CchHHHHHHHhc--CCeEEEEeeCCCC
Q 011810 307 STS---GLVPQLKQFLNE--SNCALAVSLNATT 334 (477)
Q Consensus 307 sTN---Gi~p~i~~L~~~--~d~~LaISL~a~~ 334 (477)
..+ |..+.++++++. .|+.| .|+|..+
T Consensus 86 E~~~~~~~~~~~~~~l~~~~~D~vi-gSvH~~~ 117 (269)
T PRK07328 86 EADYHPGTEEFLERLLEAYPFDYVI-GSVHYLG 117 (269)
T ss_pred EecccCCcHHHHHHHHHhCCCCeEE-EEEeecC
Confidence 554 334567777766 37766 9999754
No 196
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.36 E-value=3.8e+02 Score=28.36 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=57.1
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch----HHHH----HHHhcCCeEEEEeeCCCCHHHHh
Q 011810 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLK----QFLNESNCALAVSLNATTDEVRN 339 (477)
Q Consensus 268 nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~----p~i~----~L~~~~d~~LaISL~a~~~e~r~ 339 (477)
.+|| | || +.+.++|+.+.+... ++-|.|.|.... ..++ ++-++.++.+ +.++.+.=.- .
T Consensus 65 d~Vf-G-g~-----~~L~~~i~~~~~~~~----P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~v-i~v~t~gf~g-~ 131 (410)
T cd01968 65 DVIF-G-GE-----KKLYKAILEIIERYH----PKAVFVYSTCVVALIGDDIDAVCKTASEKFGIPV-IPVHSPGFVG-N 131 (410)
T ss_pred ceee-c-cH-----HHHHHHHHHHHHhCC----CCEEEEECCCchhhhccCHHHHHHHHHHhhCCCE-EEEECCCccc-C
Confidence 3555 8 77 567777776665432 445777776642 2233 2322223322 4444332110 0
Q ss_pred hHcCCCCCCcHHHHHHHHHHHHHhhcCCeE--EEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEE
Q 011810 340 WIMPINRKYKLGLLIETLREELHFKNNYKV--LFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402 (477)
Q Consensus 340 ~I~pi~~~~~le~ile~l~~~l~~~~~~~V--~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnL 402 (477)
. ...++..++++-+++......+. .-.+.++.+++. ..++.+|.++|+.++.+++.
T Consensus 132 ~------~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 132 K------NLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNV-AGELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred h------hHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCC-cccHHHHHHHHHHcCCeEEE
Confidence 1 11234455554442221111100 112335666664 45788999999999888874
No 197
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.42 E-value=64 Score=25.58 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEe
Q 011810 384 DDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 384 ed~~~La~ll~~l~~~VnLip 404 (477)
.++-++-+.+++.+..+.++|
T Consensus 12 ~~a~~~ek~lk~~gi~~~liP 32 (73)
T PF11823_consen 12 HDAMKAEKLLKKNGIPVRLIP 32 (73)
T ss_pred HHHHHHHHHHHHCCCcEEEeC
Confidence 344444444444444444444
No 198
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=33.16 E-value=1.5e+02 Score=23.32 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEe
Q 011810 386 AKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 386 ~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
.-+++..++.++..|.++...+... +..+++..+.+.+.|++.|+++..
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~---~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLL---PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSS---TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhh---hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 4567777888888898887666533 455667777888999999987643
No 199
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=32.98 E-value=5.9e+02 Score=26.63 Aligned_cols=166 Identities=14% Similarity=0.129 Sum_probs=95.2
Q ss_pred CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHH
Q 011810 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319 (477)
Q Consensus 240 ~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~ 319 (477)
...++.++.++.+....+ .+++.|-+ |-|..+.+. .++++.+.+ .+.. ..+...+......+++..
T Consensus 16 ~~~~s~~~k~~ia~~L~~------~Gv~~IEv---G~p~~~~~~-~e~i~~i~~-~~~~---~~v~~~~r~~~~di~~a~ 81 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDE------LGVDVIEA---GFPIASEGE-FEAIKKISQ-EGLN---AEICSLARALKKDIDKAI 81 (363)
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCEEEE---eCCCCChHH-HHHHHHHHh-cCCC---cEEEEEcccCHHHHHHHH
Confidence 456788888877765432 36776654 557776443 566665543 3432 234444445567788887
Q ss_pred hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe
Q 011810 320 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399 (477)
Q Consensus 320 ~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~ 399 (477)
+.+-..+.+.+.+.+.....++ +......++.+.+.++. .++.|..+.+. +....-.+++.+.++++.+...++.
T Consensus 82 ~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~--ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~ 156 (363)
T TIGR02090 82 DCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEY--AKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGAD 156 (363)
T ss_pred HcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHH--HHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCC
Confidence 7763345666665543333232 33334456777777774 56677666544 3333334577888888887777653
Q ss_pred EEEEeecCCCCCCCCCCcHHHHHHHHHHHHh
Q 011810 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAG 430 (477)
Q Consensus 400 VnLipynp~~~~~~~~ps~e~l~~f~~~L~~ 430 (477)
. +-+-.+.| ...++++.++.+.+++
T Consensus 157 ~--i~l~DT~G----~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 157 R--INIADTVG----VLTPQKMEELIKKLKE 181 (363)
T ss_pred E--EEEeCCCC----ccCHHHHHHHHHHHhc
Confidence 1 22323323 2345667777776665
No 200
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=32.80 E-value=6.2e+02 Score=26.81 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc--ccCCH----HHHHHHHHHHHHhcCCC
Q 011810 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE--PLHNV----ENVIKAANIMVHEQGLH 298 (477)
Q Consensus 243 Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE--PLln~----d~vi~~i~~l~~~~Gl~ 298 (477)
+++.|.++.+.. .+...|-|.+ .+ |+... +...+.++...++.|+.
T Consensus 32 ~~~~e~i~~la~---------~GfdgVE~~~-~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 32 LDPVEAVHKLAE---------LGAYGVTFHD-DDLIPFGAPPQERDQIVRRFKKALDETGLK 83 (382)
T ss_pred cCHHHHHHHHHH---------hCCCEEEecc-cccCCCCCChhHHHHHHHHHHHHHHHhCCe
Confidence 455555555433 2566777875 33 33332 22234566667788986
No 201
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=32.59 E-value=70 Score=24.45 Aligned_cols=55 Identities=11% Similarity=-0.017 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhcCCCeE-EEEeecCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 011810 381 DSFDDAKRLIGLVQGIPCKI-NLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436 (477)
Q Consensus 381 Ds~ed~~~La~ll~~l~~~V-nLipynp~~~~~~~~ps~e~l~~f~~~L~~~Gi~v~ 436 (477)
|.+..+.++.+.+.+.+..| .+..+.... ...-.-..+..+++.+.|+++|+.+.
T Consensus 10 d~pG~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 10 NKPGRLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CCCChHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHHHCCCEEE
Confidence 66778888888888776554 333333222 11111111335678899999999875
No 202
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=32.58 E-value=3.4e+02 Score=25.07 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHhcCC-CeEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 382 SFDDAKRLIGLVQGIP-CKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 382 s~ed~~~La~ll~~l~-~~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
+++++.++.+ .+++ ..+|+-.....++. .--..++++++.|++... .|+.++++....+
T Consensus 85 ~~~d~~~l~~--~g~~i~~iNvG~~~~~~g~~~i~~~v~l~~~e~~~lk~l~~-~Gv~v~~q~vP~d 148 (157)
T PRK11425 85 TPADFLTLVK--GGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKA-AGVECFVQGVPTE 148 (157)
T ss_pred CHHHHHHHHH--cCCCCCEEEECCcccCCCCEEEecceeeCHHHHHHHHHHHH-cCCEEEEEECcCC
Confidence 6788887766 2443 26777665433332 223567899998877766 4999999876654
No 203
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=32.03 E-value=72 Score=32.01 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCcch---HHHHHHHHhcCCCccCCchhhcC---CC--HHHHHHHHHHh
Q 011810 121 FTELQQWVRSHAFRPGQ---ALMLWKRLYGDDIWAHCTDELEG---LN--KDFKKMLSEHA 173 (477)
Q Consensus 121 ~~el~~~~~~~g~~~~r---a~qi~~~l~~~~~~~~~~~~~~~---l~--~~~r~~L~~~~ 173 (477)
..+|.+|+.+-.-|-|- +..||.|++++|+ +...|+|.. .| .++-+.|+..|
T Consensus 3 R~~LA~wlt~~~Np~faRv~VNRvW~~~fGrGl-V~p~dD~g~~~~~PshPeLLd~La~~F 62 (266)
T PF07587_consen 3 RLALADWLTSPDNPLFARVIVNRVWQHLFGRGL-VEPVDDFGPQGNPPSHPELLDWLAAEF 62 (266)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHcCCcC-cCCHhhccCCCCCCCCHHHHHHHHHHH
Confidence 57899999876666654 3999999999997 666666654 43 47888887665
No 204
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.61 E-value=6.4e+02 Score=26.57 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=97.1
Q ss_pred CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHH
Q 011810 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319 (477)
Q Consensus 240 ~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~ 319 (477)
...++.++.++.+....+ .+|+.|-+ |-|-++.+. .+.++.+.+ .++. .++...+-.....+++..
T Consensus 20 ~~~~s~e~k~~ia~~L~~------~GV~~IE~---G~p~~~~~~-~e~i~~i~~-~~~~---~~i~~~~r~~~~di~~a~ 85 (378)
T PRK11858 20 GVVFTNEEKLAIARMLDE------IGVDQIEA---GFPAVSEDE-KEAIKAIAK-LGLN---ASILALNRAVKSDIDASI 85 (378)
T ss_pred CCCCCHHHHHHHHHHHHH------hCCCEEEE---eCCCcChHH-HHHHHHHHh-cCCC---eEEEEEcccCHHHHHHHH
Confidence 356788877776655432 36776654 568887543 455665543 4543 123333223356778777
Q ss_pred hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe
Q 011810 320 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399 (477)
Q Consensus 320 ~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~ 399 (477)
+.+-..+.+.+...+...+.++ +......++.+.+.++. .+..|..+.+. ...+.-.+++.+.++++.+...++.
T Consensus 86 ~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~--a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~ 160 (378)
T PRK11858 86 DCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEY--AKDHGLYVSFS--AEDASRTDLDFLIEFAKAAEEAGAD 160 (378)
T ss_pred hCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHH--HHHCCCeEEEE--eccCCCCCHHHHHHHHHHHHhCCCC
Confidence 7663345677766654444443 33334445666667774 46667666554 2233234577888888888777653
Q ss_pred EEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC-CCe--EEecCCCC
Q 011810 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGA-GCT--VFLRLSRG 442 (477)
Q Consensus 400 VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~-Gi~--v~vR~s~G 442 (477)
. +-+-.+.|. ..++++.++.+.+++. +++ +..-+..|
T Consensus 161 ~--I~l~DT~G~----~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 200 (378)
T PRK11858 161 R--VRFCDTVGI----LDPFTMYELVKELVEAVDIPIEVHCHNDFG 200 (378)
T ss_pred E--EEEeccCCC----CCHHHHHHHHHHHHHhcCCeEEEEecCCcC
Confidence 2 222233232 3456666666665543 433 34444444
No 205
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.51 E-value=2.4e+02 Score=27.34 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEE-EcCCch-H-HHHHHH
Q 011810 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV-STSGLV-P-QLKQFL 319 (477)
Q Consensus 243 Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~Itv-sTNGi~-p-~i~~L~ 319 (477)
.+.++.++.+....++....+.. ..+.++...-|-.+++++.+.++.+ .+.|.. .+++ .|.|.. | .+.+++
T Consensus 108 ~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~----~i~l~Dt~G~~~P~~v~~li 181 (265)
T cd03174 108 KSREEDLENAEEAIEAAKEAGLE-VEGSLEDAFGCKTDPEYVLEVAKAL-EEAGAD----EISLKDTVGLATPEEVAELV 181 (265)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeecCCCCCHHHHHHHHHHH-HHcCCC----EEEechhcCCcCHHHHHHHH
Confidence 46666777776666555443222 2344444455567888999988854 456654 4555 788863 3 555554
Q ss_pred hc----CCeEEEEeeCCCCH
Q 011810 320 NE----SNCALAVSLNATTD 335 (477)
Q Consensus 320 ~~----~d~~LaISL~a~~~ 335 (477)
.. .+- +.+++|.-|+
T Consensus 182 ~~l~~~~~~-~~~~~H~Hn~ 200 (265)
T cd03174 182 KALREALPD-VPLGLHTHNT 200 (265)
T ss_pred HHHHHhCCC-CeEEEEeCCC
Confidence 43 321 4577777664
No 206
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=30.99 E-value=4.3e+02 Score=28.77 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=35.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCeEEE-EeecC-CC------CCCC-CCCcHHHHHHHHHHHHh-CCCeEEe
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINL-ISFNP-HC------GSQF-TPTTDEKMIEFRNILAG-AGCTVFL 437 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~~VnL-ipynp-~~------~~~~-~~ps~e~l~~f~~~L~~-~Gi~v~v 437 (477)
+.+|.++|.. .++++|.++|+.++.+++. ++-+. .. ...+ -....+....+.+.|++ +|++...
T Consensus 194 VNiiG~~~~~-gd~~elk~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~ 267 (475)
T PRK14478 194 INILGEYNLA-GELWQVKPLLDRLGIRVVACITGDARYDDVASAHRARANMMVCSGAMINLARKMEERYGIPFFE 267 (475)
T ss_pred EEEEeCCCCC-CCHHHHHHHHHHcCCeEEEEcCCCCCHHHHHhcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEe
Confidence 3456666654 5778899999998887773 32111 00 0111 01123344566777766 4887643
No 207
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=30.76 E-value=5.3e+02 Score=26.67 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=39.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeec--CCC------CCCC-CCCcHHHHHHHHHHHHh-CCCeEEecCCCC
Q 011810 374 VMLAGVNDSFDDAKRLIGLVQGIPCKINLISFN--PHC------GSQF-TPTTDEKMIEFRNILAG-AGCTVFLRLSRG 442 (477)
Q Consensus 374 vLI~GvNDs~ed~~~La~ll~~l~~~VnLipyn--p~~------~~~~-~~ps~e~l~~f~~~L~~-~Gi~v~vR~s~G 442 (477)
.++.+.+....++.+|.++++.++.+|+.++-. ... ...+ -....+....+.+.|++ +|++...-..-|
T Consensus 156 Nlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G 234 (399)
T cd00316 156 NLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIG 234 (399)
T ss_pred EEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcC
Confidence 456666655468899999999999888877632 111 1110 11223445566677765 477643322444
No 208
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=30.59 E-value=2.7e+02 Score=28.87 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=67.5
Q ss_pred HHHHhcC--CeEEEEeeCCCCHHHHhhHcCCC----CC---CcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHH
Q 011810 316 KQFLNES--NCALAVSLNATTDEVRNWIMPIN----RK---YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDA 386 (477)
Q Consensus 316 ~~L~~~~--d~~LaISL~a~~~e~r~~I~pi~----~~---~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~ 386 (477)
..|.... +..+.++=..++++.++.++... -+ +++++.++.+++ ....+.++. ++++ +++++
T Consensus 181 ~~W~~~~~~~~IiVvdD~vA~D~~~k~~lk~A~P~gvk~~i~sv~~a~~~l~~--~~~~~~~vl---il~k----~p~d~ 251 (322)
T PRK15088 181 TRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNN--PKYAGERVM---LLFT----NPTDV 251 (322)
T ss_pred HHHhhccCCCEEEEeCccccCCHHHHHHHHhcCCCCCeEEEEEHHHHHHHHhC--CCCCCCeEE---EEEC----CHHHH
Confidence 3455443 33344666677777777775332 22 245655555543 122233433 3444 67888
Q ss_pred HHHHHHHhcCCC-eEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 387 KRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 387 ~~La~ll~~l~~-~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
.+|++ .+++. .||+=..+..++. ..-..++++++.|++...+ |+.++++....+
T Consensus 252 ~~l~~--~g~~i~~iNvG~m~~~~g~~~i~~~v~l~~ee~~~l~~l~~~-Gv~v~~q~vP~d 310 (322)
T PRK15088 252 ERLVE--GGVKITSVNIGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNAR-GIELEVRKVSSD 310 (322)
T ss_pred HHHHH--cCCCCCeEEECCcccCCCCeEEecceeeCHHHHHHHHHHHHc-CCEEEEEECcCC
Confidence 87765 24432 6777665544342 2345678999999877765 999999876654
No 209
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=30.23 E-value=4.5e+02 Score=24.35 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHhcCCC-eEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 382 SFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 382 s~ed~~~La~ll~~l~~-~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
+++++.++.+ .+++. .+|+-..+..++. ..-..++++++.|++... .|+.+++|....+
T Consensus 88 ~~~da~~l~~--~g~~i~~iNiG~m~~~~g~~~i~~~v~l~~ed~~~l~~l~~-~Gv~v~~q~vP~d 151 (158)
T PRK09756 88 TPQTVRKLVE--GGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLADLRFIKQ-RGVNVFIQDVPGD 151 (158)
T ss_pred CHHHHHHHHH--cCCCCCEEEECCCcCCCCCEEEecceeeCHHHHHHHHHHHH-cCCEEEEEECcCC
Confidence 6888887766 24432 6777665443332 234567899999887776 4999999876654
No 210
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.22 E-value=3.4e+02 Score=26.09 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=72.7
Q ss_pred eEEEEecCCcccCCHH---HHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcC
Q 011810 267 TNVVFMGMGEPLHNVE---NVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMP 343 (477)
Q Consensus 267 ~nIvF~GmGEPLln~d---~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~p 343 (477)
-++-+|- |.=.-|.- .+++.++.. ..+. -.+.+=+.--...++++.+.+...+.+.+.+..
T Consensus 29 lHiDiMD-g~fvpn~~~g~~~i~~i~~~---~~~~---~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~--------- 92 (201)
T PF00834_consen 29 LHIDIMD-GHFVPNLTFGPDIIKAIRKI---TDLP---LDVHLMVENPERYIEEFAEAGADYITFHAEATE--------- 92 (201)
T ss_dssp EEEEEEB-SSSSSSB-B-HHHHHHHHTT---SSSE---EEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTT---------
T ss_pred EEEeecc-cccCCcccCCHHHHHHHhhc---CCCc---EEEEeeeccHHHHHHHHHhcCCCEEEEcccchh---------
Confidence 3566777 76444422 344444422 2121 125554443334678888877444444444332
Q ss_pred CCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCC-CCCCCCCcHHHHH
Q 011810 344 INRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC-GSQFTPTTDEKMI 422 (477)
Q Consensus 344 i~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~-~~~~~~ps~e~l~ 422 (477)
.+.++++.++ +.|.++.+ .+-|+ .. ++.+..++..+ ..|.++..+|.. |..|.+...+.++
T Consensus 93 -----~~~~~i~~ik-----~~g~k~Gi--alnP~--T~---~~~~~~~l~~v-D~VlvMsV~PG~~Gq~f~~~~~~KI~ 154 (201)
T PF00834_consen 93 -----DPKETIKYIK-----EAGIKAGI--ALNPE--TP---VEELEPYLDQV-DMVLVMSVEPGFGGQKFIPEVLEKIR 154 (201)
T ss_dssp -----THHHHHHHHH-----HTTSEEEE--EE-TT--S----GGGGTTTGCCS-SEEEEESS-TTTSSB--HGGHHHHHH
T ss_pred -----CHHHHHHHHH-----HhCCCEEE--EEECC--CC---chHHHHHhhhc-CEEEEEEecCCCCcccccHHHHHHHH
Confidence 1334555544 45666654 34454 22 33344455433 267888888864 4468888889999
Q ss_pred HHHHHHHhCCCeEEe
Q 011810 423 EFRNILAGAGCTVFL 437 (477)
Q Consensus 423 ~f~~~L~~~Gi~v~v 437 (477)
++++...++|..+.+
T Consensus 155 ~l~~~~~~~~~~~~I 169 (201)
T PF00834_consen 155 ELRKLIPENGLDFEI 169 (201)
T ss_dssp HHHHHHHHHTCGSEE
T ss_pred HHHHHHHhcCCceEE
Confidence 999999997765444
No 211
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=29.76 E-value=5.9e+02 Score=25.63 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011810 352 LLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431 (477)
Q Consensus 352 ~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~ 431 (477)
.+++++.+ ..++.+.++.+-+.+.+. ..++.+++..+++...+.. .++-+...+.. ...+.+.+..+.+.+++.
T Consensus 112 ~~~~ai~~-~~~~~gi~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~-~vvg~~l~~~~--~~~~~~~~~~~~~~A~~~ 185 (325)
T cd01320 112 AVLRGLDE-AEAEFGIKARLILCGLRH--LSPESAQETLELALKYRDK-GVVGFDLAGDE--VGFPPEKFVRAFQRAREA 185 (325)
T ss_pred HHHHHHHH-HHHhcCCeEEEEEEecCC--CCHHHHHHHHHHHHhccCC-CEEEeecCCCC--CCCCHHHHHHHHHHHHHC
Confidence 34556665 345567777666655553 2456777777776654322 12222222111 112567888888999999
Q ss_pred CCeEEecC
Q 011810 432 GCTVFLRL 439 (477)
Q Consensus 432 Gi~v~vR~ 439 (477)
|+.+++--
T Consensus 186 g~~v~~H~ 193 (325)
T cd01320 186 GLRLTAHA 193 (325)
T ss_pred CCceEEeC
Confidence 98877643
No 212
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=29.37 E-value=91 Score=27.50 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=43.0
Q ss_pred CccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcC---CCHHHHHHHHHH
Q 011810 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEG---LNKDFKKMLSEH 172 (477)
Q Consensus 112 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~---l~~~~r~~L~~~ 172 (477)
.++||...+.+||..+ .|.-+.+|++|.+|.-.++.+ .+++++.+ +.+...++|.+.
T Consensus 58 ~~iniNtA~~~eL~~l---pGIG~~~A~~Ii~~R~~~g~f-~s~eeL~~V~GIg~k~~~~i~~~ 117 (120)
T TIGR01259 58 AAVNINAASLEELQAL---PGIGPAKAKAIIEYREENGAF-KSVDDLTKVSGIGEKSLEKLKDY 117 (120)
T ss_pred CCEeCCcCCHHHHhcC---CCCCHHHHHHHHHHHHhcCCc-CCHHHHHcCCCCCHHHHHHHHhc
Confidence 5789999999998763 578889999999999777653 56777655 456666666553
No 213
>PRK00035 hemH ferrochelatase; Reviewed
Probab=29.21 E-value=2.1e+02 Score=29.33 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEEecCCcccCCHHHHHHHHHHHH
Q 011810 267 TNVVFMGMGEPLHNVENVIKAANIMV 292 (477)
Q Consensus 267 ~nIvF~GmGEPLln~d~vi~~i~~l~ 292 (477)
+.|.++-+|+|- +.+.|..++..+.
T Consensus 6 ~~vll~n~G~P~-~~~~v~~fl~~~~ 30 (333)
T PRK00035 6 DAVLLLNLGGPE-TPEDVRPFLKNFL 30 (333)
T ss_pred eEEEEEeCCCCC-CHHHHHHHHHHHc
Confidence 578899999999 7788888887654
No 214
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=28.36 E-value=2.3e+02 Score=29.97 Aligned_cols=114 Identities=19% Similarity=0.268 Sum_probs=65.4
Q ss_pred CcHHHHHHHHHHHHHhhcCCeEEEEEEEeCC--CCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHH
Q 011810 348 YKLGLLIETLREELHFKNNYKVLFEYVMLAG--VNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFR 425 (477)
Q Consensus 348 ~~le~ile~l~~~l~~~~~~~V~ieyvLI~G--vNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~ 425 (477)
++.+++-+++.+ + +.+ +-.-++++..| +--+.+.++.|.+-|..++ +|.++.++.-- ..--| ..-..++.
T Consensus 141 ~~~~~~~~al~Y-I-a~h--PeI~eVllSGGDPL~ls~~~L~~ll~~L~~Ip-Hv~iiRi~TR~--pvv~P-~RIt~~L~ 212 (369)
T COG1509 141 FNKEEWDKALDY-I-AAH--PEIREVLLSGGDPLSLSDKKLEWLLKRLRAIP-HVKIIRIGTRL--PVVLP-QRITDELC 212 (369)
T ss_pred CCHHHHHHHHHH-H-HcC--chhheEEecCCCccccCHHHHHHHHHHHhcCC-ceeEEEeeccc--ceech-hhccHHHH
Confidence 356666677774 3 333 33334444444 3335566666666666664 77778875321 00001 11126788
Q ss_pred HHHHhCCCeEEec--CCCCCcc----cccccccccCCC---CCCCccC-ChhHH
Q 011810 426 NILAGAGCTVFLR--LSRGDDQ----MAACGQLGNPGA---IQAPLLR-VPEKF 469 (477)
Q Consensus 426 ~~L~~~Gi~v~vR--~s~G~di----~aaCGQL~~~~~---~~~~~~~-~~~~~ 469 (477)
++|.+.+..+.+- -.+..+| .+||..|+..+. +|..+|| +-|.+
T Consensus 213 ~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~ 266 (369)
T COG1509 213 EILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDP 266 (369)
T ss_pred HHHhccCceEEEEcccCChhhcCHHHHHHHHHHHHcCceeecchheecccCCCH
Confidence 8888877776553 2444444 469999988774 4999999 44444
No 215
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=28.21 E-value=1e+02 Score=32.21 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHH
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGL 352 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ 352 (477)
+.+.++|+.+.+... ++-|.|.|+.+. ..+ +++-+.. .-.+.++..+..... ..| ++.
T Consensus 60 ~kL~~~i~~~~~~~~----P~~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~~vi~v~~~gf~~~~---~~G------~~~ 126 (398)
T PF00148_consen 60 EKLREAIKEIAEKYK----PKAIFVVTSCVPEIIGDDIEAVARELQEEYGIPVIPVHTPGFSGSY---SQG------YDA 126 (398)
T ss_dssp HHHHHHHHHHHHHHS----TSEEEEEE-HHHHHTTTTHHHHHHHHHHHHSSEEEEEE--TTSSSH---HHH------HHH
T ss_pred hhHHHHHHHHHhcCC----CcEEEEECCCCHHHhCCCHHHHHHHhhcccCCcEEEEECCCccCCc---cch------HHH
Confidence 677777777665532 245777776542 233 3333332 334445555552111 122 455
Q ss_pred HHHHHHHHHHhhc--CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 353 LIETLREELHFKN--NYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 353 ile~l~~~l~~~~--~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
.++++-+++.... ..+-. +.++.+.|....+..++.++++.++..|+...
T Consensus 127 a~~~l~~~~~~~~~~~~~~~--VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~ 178 (398)
T PF00148_consen 127 ALRALAEQLVKPPEEKKPRS--VNIIGGSPLGPGDLEELKRLLEELGIEVNAVF 178 (398)
T ss_dssp HHHHHHHHHTTGTTTTSSSE--EEEEEESTBTHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHhhcccccccCCCCc--eEEecCcCCCcccHHHHHHHHHHCCCceEEEe
Confidence 5555554331211 11112 33566666666899999999999988777665
No 216
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=28.03 E-value=2.1e+02 Score=31.75 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=52.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC---CcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-H-HH
Q 011810 241 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM---GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-P-QL 315 (477)
Q Consensus 241 r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm---GEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-p-~i 315 (477)
-+.+.+|+++.+....++....+ . .|.|..+ ..+-..++++++.++.+ .+.|.. +-.--+|+|+. | .+
T Consensus 117 l~~s~~e~l~~~~~~v~~ak~~G--~-~v~~~~e~~~Da~r~d~~~l~~~~~~~-~~~Gad---~i~l~DTvG~~~P~~v 189 (524)
T PRK12344 117 LRTTLEENLAMIRDSVAYLKAHG--R-EVIFDAEHFFDGYKANPEYALATLKAA-AEAGAD---WVVLCDTNGGTLPHEV 189 (524)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcC--C-eEEEccccccccccCCHHHHHHHHHHH-HhCCCC---eEEEccCCCCcCHHHH
Confidence 35688999999888877765532 2 3445443 22445678888888864 355654 22455899974 3 44
Q ss_pred HHHHhc----CCeEEEEeeCCCCH
Q 011810 316 KQFLNE----SNCALAVSLNATTD 335 (477)
Q Consensus 316 ~~L~~~----~d~~LaISL~a~~~ 335 (477)
.+++.. .++ .|++|.-|+
T Consensus 190 ~~li~~l~~~~~v--~i~~H~HND 211 (524)
T PRK12344 190 AEIVAEVRAAPGV--PLGIHAHND 211 (524)
T ss_pred HHHHHHHHHhcCC--eEEEEECCC
Confidence 444432 333 467776655
No 217
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.62 E-value=5.6e+02 Score=27.21 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=33.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEE-EEeecCC-------CCCCCC-CCcHHHHHHHHHHHHh-CCCeEE
Q 011810 374 VMLAGVNDSFDDAKRLIGLVQGIPCKIN-LISFNPH-------CGSQFT-PTTDEKMIEFRNILAG-AGCTVF 436 (477)
Q Consensus 374 vLI~GvNDs~ed~~~La~ll~~l~~~Vn-Lipynp~-------~~~~~~-~ps~e~l~~f~~~L~~-~Gi~v~ 436 (477)
.+|.+.+ ...|+++|.++++.++.+++ .++-+.. +...+. ....+....+.+.|++ +|++..
T Consensus 166 NliG~~~-~~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~ 237 (415)
T cd01977 166 NYIGDYN-IQGDTEVLQKYFERMGIQVLSTFTGNGTYDDLRWMHRAKLNVVNCARSAGYIANELKKRYGIPRL 237 (415)
T ss_pred EEEccCC-CcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeE
Confidence 3455554 46678889999998887775 3331111 011111 1123334566777765 588743
No 218
>PRK15063 isocitrate lyase; Provisional
Probab=27.48 E-value=2.6e+02 Score=30.35 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCC-CCCcHHHHHHHHHH
Q 011810 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQF-TPTTDEKMIEFRNI 427 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~-~~ps~e~l~~f~~~ 427 (477)
.+++.++-.+.| .. .-.-|++|. +. .+.++++++++-++.. ...+++.||-.+...| ...++++++.|++.
T Consensus 263 Gld~AI~Ra~AY-a~-GAD~iw~Et----~~-~d~ee~~~fa~~v~~~-~P~~~layn~sPsfnW~~~~~~~~~~~f~~e 334 (428)
T PRK15063 263 GIEQAIARGLAY-AP-YADLIWCET----ST-PDLEEARRFAEAIHAK-FPGKLLAYNCSPSFNWKKNLDDATIAKFQRE 334 (428)
T ss_pred CHHHHHHHHHHH-hc-CCCEEEeCC----CC-CCHHHHHHHHHhhccc-CccceeecCCCCCcccccccCHHHHHHHHHH
Confidence 477888777763 43 323344432 22 3567777777666431 1456677764443332 34688999999999
Q ss_pred HHhCCCeEEe
Q 011810 428 LAGAGCTVFL 437 (477)
Q Consensus 428 L~~~Gi~v~v 437 (477)
|.+.|+...+
T Consensus 335 L~~~Gy~~~~ 344 (428)
T PRK15063 335 LGAMGYKFQF 344 (428)
T ss_pred HHHcCceEEE
Confidence 9999998644
No 219
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.12 E-value=6.4e+02 Score=27.73 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhcCCCeEEEE-eecCC-C------CCCC-CCCcHHHHHHHHHHHH-hCCCeEEecCCCC
Q 011810 382 SFDDAKRLIGLVQGIPCKINLI-SFNPH-C------GSQF-TPTTDEKMIEFRNILA-GAGCTVFLRLSRG 442 (477)
Q Consensus 382 s~ed~~~La~ll~~l~~~VnLi-pynp~-~------~~~~-~~ps~e~l~~f~~~L~-~~Gi~v~vR~s~G 442 (477)
++.|+.+|.+++++++..||.+ |.+.. . ...+ -.+..+.-....+.|+ ++|++......-|
T Consensus 173 ~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 173 HRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 4688999999999999888865 54321 0 1111 1123344455666674 4577653333333
No 220
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=26.31 E-value=6.7e+02 Score=25.08 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC--CHHHHHHHHHHHHHhcCCCCCCCeEEEEcC
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH--NVENVIKAANIMVHEQGLHFSPRKVTVSTS 309 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl--n~d~vi~~i~~l~~~~Gl~i~~r~ItvsTN 309 (477)
+-+.+.+++++....+ .|.+-|-+ | ||+.. ..+.+..+++.+.+..++. ++|+|.
T Consensus 21 ~~d~~~i~~~A~~~~~------~GAdiIDV-g-~~~~~~eE~~r~~~~v~~l~~~~~~p-----lsIDT~ 77 (261)
T PRK07535 21 AKDAAFIQKLALKQAE------AGADYLDV-N-AGTAVEEEPETMEWLVETVQEVVDVP-----LCIDSP 77 (261)
T ss_pred cCCHHHHHHHHHHHHH------CCCCEEEE-C-CCCCchhHHHHHHHHHHHHHHhCCCC-----EEEeCC
Confidence 3456667766665432 24443434 6 55442 2446777777665544553 788885
No 221
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=25.64 E-value=4.3e+02 Score=29.89 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=58.0
Q ss_pred CchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHH
Q 011810 310 GLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRL 389 (477)
Q Consensus 310 Gi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~L 389 (477)
+++.++.+|.+.+--.+.+.+....+ .+.+..|++- +.+.|.+ +.|+.++.-++.-+.+-
T Consensus 46 atv~Qi~~L~~aGceiVRvtvp~~~~---------------A~al~~I~~~-L~~~g~~----iPLVADIHF~~~~A~~a 105 (606)
T PRK00694 46 GTVRQICALQEWGCDIVRVTVQGLKE---------------AQACEHIKER-LIQQGIS----IPLVADIHFFPQAAMHV 105 (606)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHH---------------HHhHHHHHHH-HhccCCC----CCEEeecCCChHHHHHH
Confidence 34578888888873333454443322 1223333331 2233433 45677766666666666
Q ss_pred HHHHhcCCCeEEEEeecCCCCC-CCC--C-Cc----------HHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 390 IGLVQGIPCKINLISFNPHCGS-QFT--P-TT----------DEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 390 a~ll~~l~~~VnLipynp~~~~-~~~--~-ps----------~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
++++.+ |.+-|=|-.... .|. . .+ .+.+..+.+..+++|+.+.|...+|+
T Consensus 106 ~~~vdk----iRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GS 169 (606)
T PRK00694 106 ADFVDK----VRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGS 169 (606)
T ss_pred HHhcCc----eEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcC
Confidence 666543 322232211110 010 0 11 45667777888899999998877765
No 222
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=25.34 E-value=2.7e+02 Score=30.80 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=36.2
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCC--------CCCC-CCCcHHHHHHHHHHHH-hCCCeEE
Q 011810 375 MLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC--------GSQF-TPTTDEKMIEFRNILA-GAGCTVF 436 (477)
Q Consensus 375 LI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~--------~~~~-~~ps~e~l~~f~~~L~-~~Gi~v~ 436 (477)
++.++| ...|++++.++|..++.+|+.....-.. .... -...........+.|+ ++|++..
T Consensus 207 liG~~n-~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~ 277 (513)
T TIGR01861 207 YVGEYN-IQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRL 277 (513)
T ss_pred EeCCCC-CccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeE
Confidence 677777 4678999999999999888744321000 0011 0111334556677776 4788754
No 223
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.44 E-value=2.7e+02 Score=22.56 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEeecCCCCC------CCCCCc-HHHHHHHHHHHHhCCCeEEe
Q 011810 381 DSFDDAKRLIGLVQGIPCKINLISFNPHCGS------QFTPTT-DEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 381 Ds~ed~~~La~ll~~l~~~VnLipynp~~~~------~~~~ps-~e~l~~f~~~L~~~Gi~v~v 437 (477)
|.+-.+.++.+.+. +..|+-+-|.-.... .+..++ .+.++++.+.|++.|+.+..
T Consensus 10 D~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 10 ERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred CCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 56667777777776 345554555432211 246667 89999999999999998754
No 224
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=24.40 E-value=2.2e+02 Score=22.11 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=41.1
Q ss_pred CCccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhc---CCCHHHHHHHHHH
Q 011810 111 GSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELE---GLNKDFKKMLSEH 172 (477)
Q Consensus 111 ~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~---~l~~~~r~~L~~~ 172 (477)
..++|+...+.++|...+. |..+-+|++|.+|--+.+. +.+++++. .++++..+++...
T Consensus 5 ~~~invNta~~~~L~~~ip--gig~~~a~~Il~~R~~~g~-~~s~~dL~~v~gi~~~~~~~i~~~ 66 (69)
T TIGR00426 5 GTRVNINTATAEELQRAMN--GVGLKKAEAIVSYREEYGP-FKTVEDLKQVPGIGNSLVEKNLAV 66 (69)
T ss_pred CCeeECcCCCHHHHHhHCC--CCCHHHHHHHHHHHHHcCC-cCCHHHHHcCCCCCHHHHHHHHhh
Confidence 4578999999998888643 5556789999999765543 24556554 4677777766543
No 225
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.39 E-value=2.7e+02 Score=30.55 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch--HHHHHHH
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFL 319 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~ 319 (477)
+.+.+|+++.+....++.+..+..+. |..+-.+-.+++++.+.++ ...+.|.. +-.--+|+|.. ..+.+++
T Consensus 106 ~~s~~e~l~~~~~~v~~ak~~g~~v~---~~~ed~~r~~~~~l~~~~~-~~~~~Ga~---~i~l~DTvG~~~P~~~~~lv 178 (488)
T PRK09389 106 KKTREEVLETAVEAVEYAKDHGLIVE---LSGEDASRADLDFLKELYK-AGIEAGAD---RICFCDTVGILTPEKTYELF 178 (488)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEE---EEEeeCCCCCHHHHHHHHH-HHHhCCCC---EEEEecCCCCcCHHHHHHHH
Q ss_pred hcC--CeEEEEeeCCCCH
Q 011810 320 NES--NCALAVSLNATTD 335 (477)
Q Consensus 320 ~~~--d~~LaISL~a~~~ 335 (477)
... ...+.+++|.-|+
T Consensus 179 ~~l~~~~~v~l~~H~HND 196 (488)
T PRK09389 179 KRLSELVKGPVSIHCHND 196 (488)
T ss_pred HHHHhhcCCeEEEEecCC
No 226
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=24.21 E-value=5.9e+02 Score=27.73 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=22.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCeEEE
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINL 402 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~~VnL 402 (477)
+.+|.++|- ..|+.++.++++.++.+++.
T Consensus 210 VNiiG~~~~-~gd~~eik~lL~~~Gi~v~~ 238 (466)
T TIGR01282 210 VAIIGDYNI-GGDAWESRILLEEIGLRVVA 238 (466)
T ss_pred EEEEecCCC-cccHHHHHHHHHHcCCeEEE
Confidence 346677774 56888999999999887763
No 227
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=23.74 E-value=7.2e+02 Score=26.78 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=38.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCeEEE-EeecCC-C------CCCCC-CCcHHHHHHHHHHHH-hCCCeEEecCCCC
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPCKINL-ISFNPH-C------GSQFT-PTTDEKMIEFRNILA-GAGCTVFLRLSRG 442 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~~VnL-ipynp~-~------~~~~~-~ps~e~l~~f~~~L~-~~Gi~v~vR~s~G 442 (477)
+.+|.++|. ..+..+|.++|+.++.+++. ++-+.. . ..... .........+.+.|+ ++|++.......|
T Consensus 200 VNiiG~~~~-~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G 278 (456)
T TIGR01283 200 INLIGEFNV-AGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYG 278 (456)
T ss_pred EEEEcCCCC-cccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCc
Confidence 345666663 45778999999999888874 432211 1 01110 112334456777785 5698754433344
No 228
>PRK01076 L-rhamnose isomerase; Provisional
Probab=23.49 E-value=3.9e+02 Score=28.81 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=65.1
Q ss_pred CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec--CCcccCC----HHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchH
Q 011810 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG--MGEPLHN----VENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP 313 (477)
Q Consensus 240 ~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G--mGEPLln----~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p 313 (477)
++..+++|..+.+..+.++.... .+| |+...- .||.-.. ++.....++ .+++.|+++ -++.|=+
T Consensus 67 G~aR~~~El~~D~~~~~~L~pg~-~~v-nLH~~y~~~~~~vdrd~~~p~~f~~w~~-~Ak~~Glgl-----DfNpn~F-- 136 (419)
T PRK01076 67 GKARNADELRADLEKALSLIPGK-HRL-NLHAIYLESDTPVDRDEIEPEHFKNWVE-WAKENGLGL-----DFNPTCF-- 136 (419)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCC-Cce-eeecccccCCCcccccccCcccHHHHHH-HHHHcCCCc-----CcCcccC--
Confidence 34568999999998887765321 122 222221 1322211 122222222 567788873 3444322
Q ss_pred HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH--HHHHhhcCCeEEEEEEEeCCCCCCH
Q 011810 314 QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR--EELHFKNNYKVLFEYVMLAGVNDSF 383 (477)
Q Consensus 314 ~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~--~~l~~~~~~~V~ieyvLI~GvNDs~ 383 (477)
........+||-+|++++|+..+ +..++.++ .|+-++.|.+..+++-+=.|.||.+
T Consensus 137 ------sh~~~k~G~SLs~pD~~iR~fwI--------~H~~~c~~I~~~~g~~lGs~~~~niWipDG~kd~P 194 (419)
T PRK01076 137 ------SHPLSADGFTLSHPDPEIRQFWI--------EHCKASRRISAYFGEELGTPCVMNIWIPDGMKDIP 194 (419)
T ss_pred ------CCccccCCCcccCCCHHHHHHHH--------HHHHHHHHHHHHHHHHhCCccceeEEeCCCCCCCc
Confidence 22223335799999999998654 33344333 1234477777666666667898543
No 229
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.43 E-value=3e+02 Score=28.86 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch--HHHHHHH
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFL 319 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~ 319 (477)
+.+.+|+++.+....++....+..+. |.-+-.+-..++++.++++ ...+.|.. +-.--+|+|.. ..+.+++
T Consensus 105 ~~s~~e~l~~~~~~i~~ak~~g~~v~---~~~ed~~r~~~~~l~~~~~-~~~~~Ga~---~i~l~DT~G~~~P~~v~~lv 177 (365)
T TIGR02660 105 RKDRAWVLERLARLVSFARDRGLFVS---VGGEDASRADPDFLVELAE-VAAEAGAD---RFRFADTVGILDPFSTYELV 177 (365)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEEE---EeecCCCCCCHHHHHHHHH-HHHHcCcC---EEEEcccCCCCCHHHHHHHH
Q ss_pred hcC--CeEEEEeeCCCCH
Q 011810 320 NES--NCALAVSLNATTD 335 (477)
Q Consensus 320 ~~~--d~~LaISL~a~~~ 335 (477)
... .+.+.+++|.-|+
T Consensus 178 ~~l~~~~~v~l~~H~HNd 195 (365)
T TIGR02660 178 RALRQAVDLPLEMHAHND 195 (365)
T ss_pred HHHHHhcCCeEEEEecCC
No 230
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=23.38 E-value=48 Score=28.05 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=22.0
Q ss_pred cccCCCCHHHHHHHHH---HCCCCcchHHHHHHH
Q 011810 114 VLLKGMSFTELQQWVR---SHAFRPGQALMLWKR 144 (477)
Q Consensus 114 ~~~~~l~~~el~~~~~---~~g~~~~ra~qi~~~ 144 (477)
..-++||.+|+++|.. .+|++..|+.+|.++
T Consensus 56 ~~rY~Ls~eEf~~W~~av~rhge~aLraT~~q~y 89 (90)
T PF06627_consen 56 CRRYGLSEEEFESWQRAVDRHGENALRATRLQKY 89 (90)
T ss_dssp HHCTTSSHHHHHHHHHHCCT--TTSS-TCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 4568999999999985 578899998666543
No 231
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=23.24 E-value=1.6e+02 Score=26.42 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCC---eE-----EEEeecCCCC-CCCCCCcHHHHHHHHHHHHhCCCeEEecCCCCCcccc
Q 011810 386 AKRLIGLVQGIPC---KI-----NLISFNPHCG-SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMA 447 (477)
Q Consensus 386 ~~~La~ll~~l~~---~V-----nLipynp~~~-~~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~di~a 447 (477)
.+++++.++..++ .+ +...|.|+.- ...+-...+-+.++.+.+.+.|+.|.+|.+.+-|-.+
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~ 72 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDA 72 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHH
Confidence 4566677765543 22 2345666642 2233334577888999999999999988876655443
No 232
>PRK14706 glycogen branching enzyme; Provisional
Probab=23.19 E-value=2e+02 Score=32.69 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCC-eEEEEeecCCC--C------CCCCC-----CcHHHHHHHHHHHHhCCCeEEe
Q 011810 384 DDAKRLIGLVQGIPC-KINLISFNPHC--G------SQFTP-----TTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 384 ed~~~La~ll~~l~~-~VnLipynp~~--~------~~~~~-----ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
+-+++|..+|+++++ .|.|+|+...+ + ..|.. -+.+++++|.+.+.++|+.|.+
T Consensus 168 ~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 168 ELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred HHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 345667788888886 79999975432 1 12222 2368899999999999999865
No 233
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=23.18 E-value=7.9e+02 Score=24.83 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=49.8
Q ss_pred CcHHHHHH----HHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHH
Q 011810 348 YKLGLLIE----TLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIE 423 (477)
Q Consensus 348 ~~le~ile----~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~ 423 (477)
.+.+++++ ++++ ...+.+.++.+-+.+++. ++++.+++..+++...+... ++-+.-.+. .. ..+.+.+.+
T Consensus 103 ~~~~~~~~~~~~~i~~-a~~~~gi~~~li~~~~r~--~~~~~~~~~~~~~~~~~~~~-vvg~~l~~~-e~-~~~~~~~~~ 176 (324)
T TIGR01430 103 ISPDTVVEAVLDGLDE-AERDFGIKSRLILCGMRH--KQPEAAEETLELAKPYKEQT-IVGFGLAGD-ER-GGPPPDFVR 176 (324)
T ss_pred CCHHHHHHHHHHHHHH-HHHhcCCeEEEEEEEeCC--CCHHHHHHHHHHHHhhccCc-EEEecCCCC-CC-CCCHHHHHH
Confidence 34555554 5555 345567676666666653 45777888887766543221 122221111 11 223677888
Q ss_pred HHHHHHhCCCeEEecC
Q 011810 424 FRNILAGAGCTVFLRL 439 (477)
Q Consensus 424 f~~~L~~~Gi~v~vR~ 439 (477)
..+.+++.|+.+++--
T Consensus 177 ~~~~A~~~g~~i~~Ha 192 (324)
T TIGR01430 177 AFAIARELGLHLTVHA 192 (324)
T ss_pred HHHHHHHCCCCeEEec
Confidence 8888999998877643
No 234
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.84 E-value=5.8e+02 Score=28.18 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHHHhcCCCeEE-EEe
Q 011810 378 GVNDSFDDAKRLIGLVQGIPCKIN-LIS 404 (477)
Q Consensus 378 GvNDs~ed~~~La~ll~~l~~~Vn-Lip 404 (477)
|++. +.|+++|.++|++++..|| ++|
T Consensus 175 ~f~~-~~Dl~eikrLL~~~Gi~vn~v~~ 201 (513)
T CHL00076 175 GFHN-QHDCRELKRLLQDLGIEINQIIP 201 (513)
T ss_pred CCCC-cchHHHHHHHHHHCCCeEEEEEC
Confidence 4443 5789999999999998888 444
No 235
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=22.83 E-value=4.2e+02 Score=29.43 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC---CcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch------
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM---GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV------ 312 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm---GEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~------ 312 (477)
+.+.+|+++.+....++....+..+. |..+ ..=-.+++++.+.++ ...+.|.. +-.-.+|+|+.
T Consensus 114 ~~s~ee~l~~~~~~v~~ak~~g~~V~---~~~e~f~D~~r~~~~~l~~~~~-~a~~aGad---~i~i~DTvG~~~P~~v~ 186 (526)
T TIGR00977 114 QTTLEENLAMIYDTVAYLKRQGDEVI---YDAEHFFDGYKANPEYALATLA-TAQQAGAD---WLVLCDTNGGTLPHEIS 186 (526)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEE---EEeeeeeecccCCHHHHHHHHH-HHHhCCCC---eEEEecCCCCcCHHHHH
Q ss_pred HHHHHHHhcCCeEEEEeeCCCCH
Q 011810 313 PQLKQFLNESNCALAVSLNATTD 335 (477)
Q Consensus 313 p~i~~L~~~~d~~LaISL~a~~~ 335 (477)
..+..+.+..+... |++|.-|+
T Consensus 187 ~li~~l~~~~~~~~-i~vH~HND 208 (526)
T TIGR00977 187 EITTKVKRSLKQPQ-LGIHAHND 208 (526)
T ss_pred HHHHHHHHhCCCCE-EEEEECCC
No 236
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.75 E-value=5.8e+02 Score=26.89 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-H-HHHHHH
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-P-QLKQFL 319 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-p-~i~~L~ 319 (477)
+.+.+|.++.+....++.... +. .|.|..+-..-.+++++.++++.+ .+.|.. +-.-.+|+|.. | .+.+++
T Consensus 108 ~~s~~~~l~~~~~~v~~a~~~--G~-~v~~~~ed~~r~~~~~l~~~~~~~-~~~Ga~---~I~l~DT~G~~~P~~v~~lv 180 (378)
T PRK11858 108 KKTREEVLERMVEAVEYAKDH--GL-YVSFSAEDASRTDLDFLIEFAKAA-EEAGAD---RVRFCDTVGILDPFTMYELV 180 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHC--CC-eEEEEeccCCCCCHHHHHHHHHHH-HhCCCC---EEEEeccCCCCCHHHHHHHH
Confidence 468899999888877766543 33 255554444445688999999854 456654 22445899974 3 444444
Q ss_pred h----cCCeEEEEeeCCCCH
Q 011810 320 N----ESNCALAVSLNATTD 335 (477)
Q Consensus 320 ~----~~d~~LaISL~a~~~ 335 (477)
. ..++. +++|.-|+
T Consensus 181 ~~l~~~~~~~--l~~H~Hnd 198 (378)
T PRK11858 181 KELVEAVDIP--IEVHCHND 198 (378)
T ss_pred HHHHHhcCCe--EEEEecCC
Confidence 3 23444 56665544
No 237
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.59 E-value=6.5e+02 Score=23.62 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=61.1
Q ss_pred EEEeeCCCCHHHHhhHcCC----CCC---CcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 011810 326 LAVSLNATTDEVRNWIMPI----NRK---YKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC 398 (477)
Q Consensus 326 LaISL~a~~~e~r~~I~pi----~~~---~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~ 398 (477)
+.++=..++++.|+.++.. +-+ .++++.++.+.. .+..+.++. ++.+ +++++..+++---++.
T Consensus 31 iVvnD~va~D~~rk~~lk~aaP~gvk~~~~~v~k~i~~i~~--~~~~~~~v~---ll~~----~p~d~~~lve~gv~I~- 100 (159)
T COG3444 31 IVVNDEVANDDVRKTLLKQAAPPGVKLRFFSVEKAIDVINK--PKYDGQKVF---LLFE----NPQDVLRLVEGGVPIK- 100 (159)
T ss_pred EEEccccccCHHHHHHHHhhcCCceEEEEEEHHHHHHHhcC--CCCCCeEEE---EEEC----CHHHHHHHHhcCCCCc-
Confidence 3355556666777766532 212 245666666553 212233333 2333 6788877776433321
Q ss_pred eEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 399 KINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 399 ~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
.||+-..+..++. ..-..++++++.|.+ |.+.|+.+.+|.-..+
T Consensus 101 ~iNVG~m~~~~gk~~i~k~vsl~e~D~~af~~-L~~~Gv~~~~r~vP~d 148 (159)
T COG3444 101 TINVGGMAFREGKKQITKAVSLDEKDIAAFKK-LKAKGVEVEVRKVPND 148 (159)
T ss_pred EEEEcCccCCCCcEEeecceeeCHHHHHHHHH-HHhcCcEEEEEECCCC
Confidence 5676665554443 234566888888864 5667899999876554
No 238
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=22.52 E-value=4.7e+02 Score=25.75 Aligned_cols=64 Identities=17% Similarity=0.386 Sum_probs=35.7
Q ss_pred EEeCCCC--CCHHHHHHHHHHHhcC--CCeEEEEeec--CCCCCCCCCCcHHHHHHHHHHHHhCCCeEEe
Q 011810 374 VMLAGVN--DSFDDAKRLIGLVQGI--PCKINLISFN--PHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 374 vLI~GvN--Ds~ed~~~La~ll~~l--~~~VnLipyn--p~~~~~~~~ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
+.|.+|+ .+.+.++++++++.+. +..|-+||.+ |.....+.-....+.-+..+.++..|-.+.+
T Consensus 4 irleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l 73 (243)
T PF10096_consen 4 IRLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL 73 (243)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence 3455655 4678899999999855 4578889954 3322212222222333333444466766544
No 239
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.43 E-value=7.8e+02 Score=24.53 Aligned_cols=179 Identities=10% Similarity=0.087 Sum_probs=93.9
Q ss_pred CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHH
Q 011810 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319 (477)
Q Consensus 240 ~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~ 319 (477)
+..++.++.++-+....+ -+++.|-+ | -|-.+.. ..+.++.+.+ .+.. ..+..-.....+.+++..
T Consensus 16 ~~~~s~~~k~~i~~~L~~------~Gv~~IEv-G--~P~~~~~-~~~~~~~l~~-~~~~---~~v~~~~r~~~~di~~a~ 81 (262)
T cd07948 16 NAFFDTEDKIEIAKALDA------FGVDYIEL-T--SPAASPQ-SRADCEAIAK-LGLK---AKILTHIRCHMDDARIAV 81 (262)
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCEEEE-E--CCCCCHH-HHHHHHHHHh-CCCC---CcEEEEecCCHHHHHHHH
Confidence 356788888777765432 36776666 3 3877743 4666665543 2332 223333344456777777
Q ss_pred hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe
Q 011810 320 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399 (477)
Q Consensus 320 ~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~ 399 (477)
+.+-..+.+.+-..+.-.+.. .+.+....++.+.+.+++ .+..|..+. +.+....-.+++.+.++++.+...++.
T Consensus 82 ~~g~~~i~i~~~~S~~~~~~~-~~~~~~e~~~~~~~~i~~--a~~~G~~v~--~~~eda~r~~~~~l~~~~~~~~~~g~~ 156 (262)
T cd07948 82 ETGVDGVDLVFGTSPFLREAS-HGKSITEIIESAVEVIEF--VKSKGIEVR--FSSEDSFRSDLVDLLRVYRAVDKLGVN 156 (262)
T ss_pred HcCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHH--HHHCCCeEE--EEEEeeCCCCHHHHHHHHHHHHHcCCC
Confidence 776333445554443222221 222222334445555563 455565544 444443434578888888888877653
Q ss_pred EEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC-CCe--EEecCCCCC
Q 011810 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAGA-GCT--VFLRLSRGD 443 (477)
Q Consensus 400 VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~-Gi~--v~vR~s~G~ 443 (477)
. +-+-.+.|. .+++++.++.+.+++. +++ +..-...|-
T Consensus 157 ~--i~l~Dt~G~----~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gl 197 (262)
T cd07948 157 R--VGIADTVGI----ATPRQVYELVRTLRGVVSCDIEFHGHNDTGC 197 (262)
T ss_pred E--EEECCcCCC----CCHHHHHHHHHHHHHhcCCeEEEEECCCCCh
Confidence 2 223333332 3456677776666653 443 344445553
No 240
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=22.18 E-value=2e+02 Score=26.33 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=26.8
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHH
Q 011810 231 FCYTGRMGLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVH 293 (477)
Q Consensus 231 FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~ 293 (477)
||.++...-..-...+++++..... +.+|.|+| |+.-.+-+.++++ +++
T Consensus 52 F~ln~~~~~p~~~Gi~gvl~~Y~~~----------~~~v~l~G---PT~fapiI~~a~~-~a~ 100 (146)
T PF07002_consen 52 FPLNGNPQNPECQGIDGVLEAYRKA----------LPKVQLSG---PTNFAPIINHAAK-IAK 100 (146)
T ss_pred eeeecCCCCCcccCHHHHHHHHHHH----------hhheEECC---CccHHHHHHHHHH-HHh
Confidence 5555433222233456666554432 45677988 9876555555555 444
No 241
>PRK14705 glycogen branching enzyme; Provisional
Probab=22.09 E-value=2.1e+02 Score=35.26 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCC-eEEEEeecCCC--CC------CCCCC-----cHHHHHHHHHHHHhCCCeEEe
Q 011810 384 DDAKRLIGLVQGIPC-KINLISFNPHC--GS------QFTPT-----TDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 384 ed~~~La~ll~~l~~-~VnLipynp~~--~~------~~~~p-----s~e~l~~f~~~L~~~Gi~v~v 437 (477)
+-++++..+++++++ +|.|+|+..++ ++ .|..| +++++++|.+.+.++|+.|.+
T Consensus 766 ~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VIL 833 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLL 833 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 345677899999996 89999985432 21 22222 378999999999999999876
No 242
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.98 E-value=9.8e+02 Score=26.34 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCCeEEEEe-ecCC-------CCCCC-CCCcHHHHHHHHHHHHh-CCCeEEecCCCC
Q 011810 378 GVNDSFDDAKRLIGLVQGIPCKINLIS-FNPH-------CGSQF-TPTTDEKMIEFRNILAG-AGCTVFLRLSRG 442 (477)
Q Consensus 378 GvNDs~ed~~~La~ll~~l~~~VnLip-ynp~-------~~~~~-~~ps~e~l~~f~~~L~~-~Gi~v~vR~s~G 442 (477)
|+| ++.|+.++.++|+.++..||.++ .+.. +...+ -....+.-....+.|++ +|++......-|
T Consensus 170 ~f~-~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 170 GFH-HRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred CCC-ChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 444 36899999999999999888764 2111 01111 11223444566677764 577643323444
No 243
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.97 E-value=1e+03 Score=25.59 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHH-HHHhcCCCCCCCeEEEEcCCchHHHHH---
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANI-MVHEQGLHFSPRKVTVSTSGLVPQLKQ--- 317 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~-l~~~~Gl~i~~r~ItvsTNGi~p~i~~--- 317 (477)
..++.+|++.+....+ .++. |-|... +.+.+++.. ..++.+..+.+..|. .+-|++|.+..
T Consensus 37 f~~pp~i~~Al~~rvd------hGvf-------GY~~~~-~~~~~ai~~w~~~r~~~~i~~e~i~-~~p~VVpgi~~~I~ 101 (388)
T COG1168 37 FPTPPEIIEALRERVD------HGVF-------GYPYGS-DELYAAIAHWFKQRHQWEIKPEWIV-FVPGVVPGISLAIR 101 (388)
T ss_pred CCCCHHHHHHHHHHHh------cCCC-------CCCCCC-HHHHHHHHHHHHHhcCCCCCcceEE-EcCcchHhHHHHHH
Confidence 3567788888876543 2443 667555 445555544 345567766555543 34466665443
Q ss_pred -HHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHH--HHHHHHHHHh
Q 011810 318 -FLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFD--DAKRLIGLVQ 394 (477)
Q Consensus 318 -L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~e--d~~~La~ll~ 394 (477)
|.+.+|-++ +.+ |+ .+||. +.++ ..++++ ++..|..+ |..- |+++|-+.++
T Consensus 102 ~~T~~gd~Vv---i~t----------Pv--Y~PF~---~~i~-----~n~R~~-i~~pL~~~--~~~y~iD~~~LE~~~~ 155 (388)
T COG1168 102 ALTKPGDGVV---IQT----------PV--YPPFY---NAIK-----LNGRKV-IENPLVED--DGRYEIDFDALEKAFV 155 (388)
T ss_pred HhCcCCCeeE---ecC----------CC--chHHH---HHHh-----hcCcEE-Eecccccc--CCcEEecHHHHHHHHh
Confidence 334455332 122 22 22333 2222 244444 44445432 2222 5666666665
Q ss_pred cCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhCCCeEEe
Q 011810 395 GIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 395 ~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
+-.+++- +-.||+--. -+.-+.|+++++.++.+++|+.|.-
T Consensus 156 ~~~vkl~-iLCnPHNP~-Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 156 DERVKLF-ILCNPHNPT-GRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred cCCccEE-EEeCCCCCC-CccccHHHHHHHHHHHHHcCCEEEe
Confidence 4433322 223444211 1345789999999999999998754
No 244
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=21.97 E-value=7.6e+02 Score=24.24 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=91.7
Q ss_pred CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHH
Q 011810 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319 (477)
Q Consensus 240 ~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~ 319 (477)
...++.++.++.+....+ .+++.|-+ |=|.+..+. .+.++.+.+ .+.+ .++..........+++..
T Consensus 14 ~~~~~~~~k~~i~~~L~~------~Gv~~iE~---g~p~~~~~~-~e~~~~l~~-~~~~---~~~~~~~r~~~~~v~~a~ 79 (259)
T cd07939 14 GVAFSREEKLAIARALDE------AGVDEIEV---GIPAMGEEE-REAIRAIVA-LGLP---ARLIVWCRAVKEDIEAAL 79 (259)
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCEEEE---ecCCCCHHH-HHHHHHHHh-cCCC---CEEEEeccCCHHHHHHHH
Confidence 346788877776654322 36766655 235554222 345554443 2222 223333333455677776
Q ss_pred hcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCe
Q 011810 320 NESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCK 399 (477)
Q Consensus 320 ~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~ 399 (477)
+.+-..+.+.+...+......+ +......++.+.+.+++ .++.|..+.+...-... -+++.+.++++.+.+.++.
T Consensus 80 ~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~--a~~~G~~v~~~~~~~~~--~~~~~~~~~~~~~~~~G~~ 154 (259)
T cd07939 80 RCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGR--AKDRGLFVSVGAEDASR--ADPDFLIEFAEVAQEAGAD 154 (259)
T ss_pred hCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHH--HHHCCCeEEEeeccCCC--CCHHHHHHHHHHHHHCCCC
Confidence 6653334555544433333333 33333445566666664 46677766655432222 3477888888888776643
Q ss_pred EEEEeecCCCCCCCCCCcHHHHHHHHHHHHh-CCCe--EEecCCCC
Q 011810 400 INLISFNPHCGSQFTPTTDEKMIEFRNILAG-AGCT--VFLRLSRG 442 (477)
Q Consensus 400 VnLipynp~~~~~~~~ps~e~l~~f~~~L~~-~Gi~--v~vR~s~G 442 (477)
-+-+-.+.|. ..++++.++.+.+++ .+++ +..-...|
T Consensus 155 --~i~l~DT~G~----~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~G 194 (259)
T cd07939 155 --RLRFADTVGI----LDPFTTYELIRRLRAATDLPLEFHAHNDLG 194 (259)
T ss_pred --EEEeCCCCCC----CCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 2333333332 345667666666654 3433 33344444
No 245
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=21.86 E-value=7.1e+02 Score=26.49 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCc--hHHHHHHHhcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHH
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGL--VPQLKQFLNES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLR 358 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi--~p~i~~L~~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~ 358 (477)
+.+.++++.+.+..|+ .+..+|- +-.+.++.... +-.+.+=+-+.| .+++.+-+.+.
T Consensus 257 ~e~~~a~~~l~~~~gi-------~ve~agaa~lAa~~~~~~~~~~~~Vv~ilsGgn-------------~d~~~~~~~~~ 316 (409)
T TIGR02079 257 GAVCTTILDLYNLEGI-------VAEPAGALSIAALERLGEEIKGKTVVCVVSGGN-------------NDIERTEEIRE 316 (409)
T ss_pred HHHHHHHHHHHHhcCc-------eecchHHHHHHHHHhhhhhcCCCeEEEEECCCC-------------CCHHHHHHHHH
Confidence 5678888877777664 4555553 23333333221 111111111222 23444444444
Q ss_pred HHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCC-------CCCCCcHHHHHHHHHHHHhC
Q 011810 359 EELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGS-------QFTPTTDEKMIEFRNILAGA 431 (477)
Q Consensus 359 ~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~-------~~~~ps~e~l~~f~~~L~~~ 431 (477)
+- ....++.+.+++. +| |.+-.+.++.+.+.+.+..|-.+.|+...+. .+..++++.++++.+.|++.
T Consensus 317 ~~-l~~~~r~~~~~v~-ip---drPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~ 391 (409)
T TIGR02079 317 RS-LLYEGLKHYFIVR-FP---QRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAA 391 (409)
T ss_pred HH-HHhcCCEEEEEEE-eC---CCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 42 3446777777654 45 5666777777744433334545555532111 24566789999999999999
Q ss_pred CCeEEecC
Q 011810 432 GCTVFLRL 439 (477)
Q Consensus 432 Gi~v~vR~ 439 (477)
|+.+....
T Consensus 392 Gy~~~~~~ 399 (409)
T TIGR02079 392 DIHYEDIN 399 (409)
T ss_pred CCCeEECC
Confidence 99876543
No 246
>PRK12435 ferrochelatase; Provisional
Probab=21.63 E-value=3.4e+02 Score=27.98 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=54.0
Q ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCC-c----h-----HHHHHHHhc-C--Ce-EEEEeeCCCCHHHHhh
Q 011810 275 GEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSG-L----V-----PQLKQFLNE-S--NC-ALAVSLNATTDEVRNW 340 (477)
Q Consensus 275 GEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNG-i----~-----p~i~~L~~~-~--d~-~LaISL~a~~~e~r~~ 340 (477)
|+|.. +.+.+..+.+.+..|+. ...++..+-| . + +.+++|.++ + .+ .+-+++=+-.-|+
T Consensus 192 GDpY~--~q~~~t~~~v~~~l~~~--~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlET--- 264 (311)
T PRK12435 192 GDPYP--DQLEETADLIAEQANVE--HYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEV--- 264 (311)
T ss_pred CCCHH--HHHHHHHHHHHHHcCCC--CCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHH---
Confidence 88743 45666666666665553 4567777763 1 1 346667665 4 22 1112222222222
Q ss_pred HcCCCCCCcHHHH-HHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc
Q 011810 341 IMPINRKYKLGLL-IETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395 (477)
Q Consensus 341 I~pi~~~~~le~i-le~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~ 395 (477)
+.++ +++-+ ...+.|.. +..++-+||++.-++.|++++..
T Consensus 265 ---------l~Eldie~~e--~a~~~G~~----~~r~~~lN~~p~fi~~La~lv~~ 305 (311)
T PRK12435 265 ---------LYDNDYECKV--VTDEIGAK----YYRPEMPNADPLFIDALADVVLK 305 (311)
T ss_pred ---------HHHHHHHHHH--HHHHcCCc----EEeccCCCCCHHHHHHHHHHHHH
Confidence 1222 22222 23455643 34467789999999999999874
No 247
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=21.32 E-value=9.2e+02 Score=25.92 Aligned_cols=63 Identities=10% Similarity=-0.026 Sum_probs=34.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCeEEE-EeecC-C------CCCCCC-CCcHHHHHHHHHHHHh-CCCeEEe
Q 011810 374 VMLAGVNDSFDDAKRLIGLVQGIPCKINL-ISFNP-H------CGSQFT-PTTDEKMIEFRNILAG-AGCTVFL 437 (477)
Q Consensus 374 vLI~GvNDs~ed~~~La~ll~~l~~~VnL-ipynp-~------~~~~~~-~ps~e~l~~f~~~L~~-~Gi~v~v 437 (477)
.++.+++ ...++++|.++++.++.++|. ++-.. . +...+. ....+......+.|++ +|++...
T Consensus 195 Niig~~~-~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~~ 267 (443)
T TIGR01862 195 NIIGEYN-IGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKLNLVHCARSANYIANELEERYGIPWMK 267 (443)
T ss_pred EEEccCc-CcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeEe
Confidence 4566655 356788999999998887774 22111 1 011111 1123344566677764 5887443
No 248
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=21.22 E-value=4.3e+02 Score=26.30 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCC-eEEEEeecCCCCCCC-CCCcHHHHHHHHHHHHhCCCeEEe
Q 011810 385 DAKRLIGLVQGIPC-KINLISFNPHCGSQF-TPTTDEKMIEFRNILAGAGCTVFL 437 (477)
Q Consensus 385 d~~~La~ll~~l~~-~VnLipynp~~~~~~-~~ps~e~l~~f~~~L~~~Gi~v~v 437 (477)
.++.+.+.+++-+. .|.|+|+.-..|... .....+.-+....+|.++|++|++
T Consensus 180 ~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~v~~ 234 (265)
T COG4822 180 LVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFKVEV 234 (265)
T ss_pred cHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCceeEE
Confidence 46677888887765 799999875544211 111111224678899999999865
No 249
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.21 E-value=78 Score=21.69 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.2
Q ss_pred cCCCCHHHHHHHHHHCCCCc
Q 011810 116 LKGMSFTELQQWVRSHAFRP 135 (477)
Q Consensus 116 ~~~l~~~el~~~~~~~g~~~ 135 (477)
+..|+.+||++++.+.|.+.
T Consensus 1 l~~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLST 20 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-S
T ss_pred CCcCcHHHHHHHHHHCCCCC
Confidence 35688999999999999875
No 250
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=21.20 E-value=8.1e+02 Score=26.03 Aligned_cols=149 Identities=7% Similarity=-0.026 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCchH----HHHHHHhc-CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHH
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVP----QLKQFLNE-SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIET 356 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p----~i~~L~~~-~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~ 356 (477)
+++.++|+.+.+... ++-|.|.|.++.+ .+....++ .+..+ |.++++.=.... ..+.++....+
T Consensus 77 ~~L~~~i~~~~~~~~----p~~I~V~stC~~e~iGdDi~~~~~~~~~~~v-v~v~tpgf~g~~------~~~G~~~a~~~ 145 (416)
T cd01980 77 EDIREAIRKLADPPA----YTFIPVISLCVAETAGVAEELLPKQIDGVRV-ILVRGPAFPIHS------HPEAKDVGAML 145 (416)
T ss_pred HHHHHHHHHHhhcCC----CCEEEEeCCChhhhhcCchhhhhcccCCCeE-EEecCCCccCCc------chhHHHHHHHH
Confidence 688888887654422 3457777777642 34444432 23333 566665422111 11112333333
Q ss_pred HHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEE-EeecCCCC------CCCCCCcHHHHHHHHHHHH
Q 011810 357 LREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINL-ISFNPHCG------SQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 357 l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnL-ipynp~~~------~~~~~ps~e~l~~f~~~L~ 429 (477)
+-+.+.......-.=...++.-+| +.|++++.++++.++..+++ +|-....+ ....-.-...+....+.|+
T Consensus 146 i~~~l~~~~~~~~~~~vniiG~~~--~~d~~ei~~lL~~~Gl~~~~~l~~~~~~el~~~~~A~~~i~~~~~~~~~a~~Le 223 (416)
T cd01980 146 LLARFEDFDGPVAEPSLALLGEMF--PADPVAIGSVLERMGLAAVPVVPTREWRELYAAGDAAAVAALHPFYTATIRELE 223 (416)
T ss_pred HHHhhhccccCCCCCeEEEEccCC--CCCHHHHHHHHHHcCCceeeEeCCCCHHHHhhcccCcEEEEeChhHHHHHHHHH
Confidence 322122211100001233452244 44677899999999887764 44322211 1100000122335577777
Q ss_pred hCCCeEEecCCCCC
Q 011810 430 GAGCTVFLRLSRGD 443 (477)
Q Consensus 430 ~~Gi~v~vR~s~G~ 443 (477)
+.|++......-|-
T Consensus 224 ~~GvP~~~~~piG~ 237 (416)
T cd01980 224 EAGRPIVSGAPVGA 237 (416)
T ss_pred HcCCceecCCCcCc
Confidence 88988643333343
No 251
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.14 E-value=8.1e+02 Score=24.20 Aligned_cols=166 Identities=14% Similarity=0.066 Sum_probs=85.7
Q ss_pred CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHH
Q 011810 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319 (477)
Q Consensus 240 ~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~ 319 (477)
...+++++.++.+....+ .+++.|-+. =|-.+.+. .+.++.+.+.. . ..++...+.+....+++..
T Consensus 14 ~~~~~~~~k~~i~~~L~~------~Gv~~iEvg---~~~~~~~~-~~~~~~l~~~~-~---~~~~~~l~r~~~~~v~~a~ 79 (268)
T cd07940 14 GVSLTPEEKLEIARQLDE------LGVDVIEAG---FPAASPGD-FEAVKRIAREV-L---NAEICGLARAVKKDIDAAA 79 (268)
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCEEEEe---CCCCCHHH-HHHHHHHHHhC-C---CCEEEEEccCCHhhHHHHH
Confidence 346788877776655432 367766662 24444332 24555454321 1 1245555555555666666
Q ss_pred hcC----CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc
Q 011810 320 NES----NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQG 395 (477)
Q Consensus 320 ~~~----d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~ 395 (477)
+.+ ...+.+.+ +.++....+-........++.+.+.+++ .++.|..+.+...-.. -.+++.+.++++.+.+
T Consensus 80 ~~~~~~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~--a~~~G~~v~~~~~~~~--~~~~~~~~~~~~~~~~ 154 (268)
T cd07940 80 EALKPAKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEY--AKSHGLDVEFSAEDAT--RTDLDFLIEVVEAAIE 154 (268)
T ss_pred HhCCCCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHH--HHHcCCeEEEeeecCC--CCCHHHHHHHHHHHHH
Confidence 554 22334444 2333222222222223345666677774 4566766665433222 2357788888888877
Q ss_pred CCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHh
Q 011810 396 IPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAG 430 (477)
Q Consensus 396 l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~ 430 (477)
.++. -+-+-.+.|. .+++++.++.+.+++
T Consensus 155 ~G~~--~i~l~DT~G~----~~P~~v~~lv~~l~~ 183 (268)
T cd07940 155 AGAT--TINIPDTVGY----LTPEEFGELIKKLKE 183 (268)
T ss_pred cCCC--EEEECCCCCC----CCHHHHHHHHHHHHH
Confidence 7643 2333343333 345667666666665
No 252
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.99 E-value=7.7e+02 Score=23.92 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC-HH---HHHHHHHHHHHhcCCC
Q 011810 243 LTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN-VE---NVIKAANIMVHEQGLH 298 (477)
Q Consensus 243 Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln-~d---~vi~~i~~l~~~~Gl~ 298 (477)
.+.++.++.+.. .+.+.|-+.+ +.|-.. .+ .-.+.++...++.|+.
T Consensus 13 ~~l~~~l~~~~~---------~G~~~vEl~~-~~~~~~~~~~~~~~~~~l~~~~~~~gl~ 62 (275)
T PRK09856 13 LPIEHAFRDASE---------LGYDGIEIWG-GRPHAFAPDLKAGGIKQIKALAQTYQMP 62 (275)
T ss_pred CCHHHHHHHHHH---------cCCCEEEEcc-CCccccccccCchHHHHHHHHHHHcCCe
Confidence 467766666653 3677777876 655221 11 1234455566788875
No 253
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.98 E-value=6.9e+02 Score=24.57 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeE-EEEcCCch-H-HHHHH
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKV-TVSTSGLV-P-QLKQF 318 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~I-tvsTNGi~-p-~i~~L 318 (477)
+.+.+|+++.+....++.... +. .|.|.-+-.+-..++++.+.++.+ .+.|.. .| -.+|.|.. | .+.++
T Consensus 102 ~~~~~~~~~~~~~~i~~a~~~--G~-~v~~~~~~~~~~~~~~~~~~~~~~-~~~G~~----~i~l~DT~G~~~P~~v~~l 173 (259)
T cd07939 102 GKDRAWVLDQLRRLVGRAKDR--GL-FVSVGAEDASRADPDFLIEFAEVA-QEAGAD----RLRFADTVGILDPFTTYEL 173 (259)
T ss_pred CCCHHHHHHHHHHHHHHHHHC--CC-eEEEeeccCCCCCHHHHHHHHHHH-HHCCCC----EEEeCCCCCCCCHHHHHHH
Confidence 568889998888777666543 33 244544455556788999988865 445654 44 45899973 3 55555
Q ss_pred Hh----cCCeEEEEeeCCCCH
Q 011810 319 LN----ESNCALAVSLNATTD 335 (477)
Q Consensus 319 ~~----~~d~~LaISL~a~~~ 335 (477)
+. ..+ +.+++|.-|+
T Consensus 174 v~~l~~~~~--~~l~~H~Hn~ 192 (259)
T cd07939 174 IRRLRAATD--LPLEFHAHND 192 (259)
T ss_pred HHHHHHhcC--CeEEEEecCC
Confidence 43 334 3467776654
No 254
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.98 E-value=6.9e+02 Score=23.88 Aligned_cols=84 Identities=17% Similarity=0.265 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEE-EcCCch-H-HHHHH
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTV-STSGLV-P-QLKQF 318 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~Itv-sTNGi~-p-~i~~L 318 (477)
+.+.+++++.+....++.+.. +.. +.|..+-.+-...+++.++++.+. +.|.. .|++ +|.|.. | .+.++
T Consensus 100 ~~~~~~~~~~~~~~v~~ak~~--g~~-v~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----~i~l~Dt~G~~~P~~v~~l 171 (237)
T PF00682_consen 100 NKSREEALERIEEAVKYAKEL--GYE-VAFGCEDASRTDPEELLELAEALA-EAGAD----IIYLADTVGIMTPEDVAEL 171 (237)
T ss_dssp CSHHHHHHHHHHHHHHHHHHT--TSE-EEEEETTTGGSSHHHHHHHHHHHH-HHT-S----EEEEEETTS-S-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhc--CCc-eEeCccccccccHHHHHHHHHHHH-HcCCe----EEEeeCccCCcCHHHHHHH
Confidence 467888998888777666543 222 345555555566788999988654 45654 4554 599973 3 44444
Q ss_pred H----hcCC-eEEEEeeCCCCH
Q 011810 319 L----NESN-CALAVSLNATTD 335 (477)
Q Consensus 319 ~----~~~d-~~LaISL~a~~~ 335 (477)
+ +..+ .. +.+|.-|+
T Consensus 172 v~~~~~~~~~~~--l~~H~Hnd 191 (237)
T PF00682_consen 172 VRALREALPDIP--LGFHAHND 191 (237)
T ss_dssp HHHHHHHSTTSE--EEEEEBBT
T ss_pred HHHHHHhccCCe--EEEEecCC
Confidence 3 3333 44 56665553
No 255
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=20.34 E-value=2.6e+02 Score=30.47 Aligned_cols=50 Identities=16% Similarity=0.287 Sum_probs=39.2
Q ss_pred eEEEEeecCCCC-CCCCCCcHHHHHHHHHHHHhCCCeEEecCCCCCcccccccccc
Q 011810 399 KINLISFNPHCG-SQFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDDQMAACGQLG 453 (477)
Q Consensus 399 ~VnLipynp~~~-~~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~di~aaCGQL~ 453 (477)
.+--+-.-|+.+ ..+..|+++-+++++++++++|+...+ ++++++||+.+
T Consensus 222 ~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~-----DEVQtG~GRTG 272 (447)
T COG0160 222 EVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIA-----DEVQTGFGRTG 272 (447)
T ss_pred ceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE-----eccccCCCccc
Confidence 444444566643 568888999999999999999998765 67888999875
No 256
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=20.12 E-value=1e+03 Score=25.09 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCH----HHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-H-----
Q 011810 244 TAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNV----ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-P----- 313 (477)
Q Consensus 244 t~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~----d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-p----- 313 (477)
+.++..+.+..+.+ .+.+ -+|+.+-.|-... +.+.++++ ++++.|+. +.++.|.-. .
T Consensus 12 ~~~~~~~yi~~a~~------~Gf~-~iFTSL~ipe~~~~~~~~~~~~l~~-~a~~~~~~-----v~~Disp~~l~~lg~~ 78 (357)
T PF05913_consen 12 SFEENKAYIEKAAK------YGFK-RIFTSLHIPEDDPEDYLERLKELLK-LAKELGME-----VIADISPKVLKKLGIS 78 (357)
T ss_dssp -HHHHHHHHHHHHC------TTEE-EEEEEE---------HHHHHHHHHH-HHHHCT-E-----EEEEE-CCHHHTTT-B
T ss_pred CHHHHHHHHHHHHH------CCCC-EEECCCCcCCCCHHHHHHHHHHHHH-HHHHCCCE-----EEEECCHHHHHHcCCC
Confidence 56666666666543 3555 4488877776543 34455555 57788886 899988742 1
Q ss_pred --HHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHH
Q 011810 314 --QLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIG 391 (477)
Q Consensus 314 --~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ 391 (477)
.+..+.+.+-..|.++.--.. +++. . +... |.+|.++.-.+ +.+++++|.+
T Consensus 79 ~~dl~~~~~lGi~~lRlD~Gf~~----------------~~ia----~-ls~n-g~~I~LNASti-----~~~~l~~L~~ 131 (357)
T PF05913_consen 79 YDDLSFFKELGIDGLRLDYGFSG----------------EEIA----K-LSKN-GIKIELNASTI-----TEEELDELIK 131 (357)
T ss_dssp TTBTHHHHHHT-SEEEESSS-SC----------------HHHH----H-HTTT--SEEEEETTT-------CCHHHHHCC
T ss_pred HHHHHHHHHcCCCEEEECCCCCH----------------HHHH----H-HHhC-CCEEEEECCCC-----ChHHHHHHHH
Confidence 245555545334433322221 2222 1 2222 45655542211 1223433332
Q ss_pred HHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhCCCeEE
Q 011810 392 LVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGCTVF 436 (477)
Q Consensus 392 ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~Gi~v~ 436 (477)
.- ...-+++..|...-.++...+.+...+.-+++++.|+++.
T Consensus 132 ~~---~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~ 173 (357)
T PF05913_consen 132 YG---ANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTA 173 (357)
T ss_dssp TT-----GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEE
T ss_pred hc---CCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 21 1123455544433334555678889999999999999863
Done!