Query 011810
Match_columns 477
No_of_seqs 337 out of 2649
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 4.6E-83 1.6E-87 666.4 36.0 342 112-458 16-364 (404)
2 2yx0_A Radical SAM enzyme; pre 100.0 3.6E-30 1.2E-34 262.0 19.7 258 158-431 17-305 (342)
3 3c8f_A Pyruvate formate-lyase 99.9 8.1E-26 2.8E-30 216.0 21.7 198 222-436 26-244 (245)
4 2z2u_A UPF0026 protein MJ0257; 99.9 4.1E-27 1.4E-31 235.8 12.8 265 161-453 2-301 (311)
5 1tv8_A MOAA, molybdenum cofact 99.9 1.9E-20 6.5E-25 189.8 25.5 233 215-465 14-282 (340)
6 3can_A Pyruvate-formate lyase- 99.8 4.6E-20 1.6E-24 170.7 18.4 156 268-437 6-180 (182)
7 2a5h_A L-lysine 2,3-aminomutas 99.8 3.1E-18 1.1E-22 179.3 20.3 215 200-441 103-332 (416)
8 3t7v_A Methylornithine synthas 99.8 1.1E-18 3.7E-23 177.8 13.8 229 155-413 2-247 (350)
9 3iix_A Biotin synthetase, puta 99.8 1.7E-17 5.9E-22 168.1 20.7 192 219-430 57-258 (348)
10 1r30_A Biotin synthase; SAM ra 99.6 6.7E-14 2.3E-18 143.6 24.6 188 222-430 73-275 (369)
11 2qgq_A Protein TM_1862; alpha- 99.5 3.2E-13 1.1E-17 135.3 20.6 183 214-412 3-200 (304)
12 1olt_A Oxygen-independent copr 99.3 8.5E-11 2.9E-15 124.1 23.2 202 223-435 60-284 (457)
13 4fhd_A Spore photoproduct lyas 98.0 3.9E-05 1.3E-09 78.8 13.5 160 219-394 111-281 (368)
14 2l69_A Rossmann 2X3 fold prote 85.3 7.5 0.00026 32.0 9.9 71 350-436 35-105 (134)
15 2cw6_A Hydroxymethylglutaryl-C 77.4 50 0.0017 32.0 14.7 178 241-443 22-213 (298)
16 1ydn_A Hydroxymethylglutaryl-C 63.9 1.1E+02 0.0036 29.5 15.5 166 241-431 21-196 (295)
17 3pdi_B Nitrogenase MOFE cofact 56.2 20 0.0007 37.2 7.2 111 282-404 78-203 (458)
18 3lfj_A Manxb, phosphotransfera 55.2 42 0.0014 30.8 8.3 61 382-443 106-170 (187)
19 1vsq_C Mannose-specific phosph 53.5 99 0.0034 27.6 10.4 83 349-443 64-151 (165)
20 1qgu_B Protein (nitrogenase mo 53.4 22 0.00074 37.7 6.9 111 282-404 127-251 (519)
21 1nrz_A PTS system, sorbose-spe 49.0 94 0.0032 27.7 9.5 83 349-443 61-148 (164)
22 3p3v_A PTS system, N-acetylgal 48.8 68 0.0023 28.7 8.5 62 382-444 87-152 (163)
23 1ble_A Fructose permease; phos 46.6 91 0.0031 27.8 8.9 83 349-443 62-149 (163)
24 1mio_B Nitrogenase molybdenum 44.9 29 0.001 35.9 6.2 109 282-404 82-202 (458)
25 3eye_A PTS system N-acetylgala 39.0 87 0.003 28.1 7.6 60 382-443 90-153 (168)
26 2ztj_A Homocitrate synthase; ( 33.1 3.8E+02 0.013 26.7 15.5 178 241-443 20-202 (382)
27 1f6y_A 5-methyltetrahydrofolat 32.9 3.1E+02 0.011 26.0 11.0 164 241-440 20-198 (262)
28 1aj0_A DHPS, dihydropteroate s 32.6 2.8E+02 0.0095 26.8 10.6 68 241-322 33-110 (282)
29 1xw3_A Sulfiredoxin; retroredu 29.7 29 0.00098 29.2 2.6 56 399-454 13-77 (110)
30 3e96_A Dihydrodipicolinate syn 27.3 4.3E+02 0.015 25.5 12.2 123 242-390 29-158 (316)
31 2duy_A Competence protein come 26.0 39 0.0013 25.7 2.5 55 110-172 15-72 (75)
32 2v9d_A YAGE; dihydrodipicolini 25.8 4.8E+02 0.017 25.6 13.6 126 242-390 48-182 (343)
33 2f06_A Conserved hypothetical 25.3 50 0.0017 28.0 3.4 80 351-436 56-136 (144)
34 3lg3_A Isocitrate lyase; conse 24.4 1.2E+02 0.004 31.5 6.5 80 348-437 268-350 (435)
35 2hmc_A AGR_L_411P, dihydrodipi 23.8 5.3E+02 0.018 25.4 14.6 123 242-391 43-177 (344)
36 3ctl_A D-allulose-6-phosphate 22.3 4.7E+02 0.016 24.2 10.3 135 268-435 30-168 (231)
37 1vr6_A Phospho-2-dehydro-3-deo 21.9 1.8E+02 0.0061 29.2 7.2 89 376-464 112-207 (350)
38 3lot_A Uncharacterized protein 21.6 5.8E+02 0.02 25.0 18.7 162 242-429 28-224 (314)
39 3b4u_A Dihydrodipicolinate syn 21.5 5.3E+02 0.018 24.5 13.5 126 242-390 20-158 (294)
40 3p14_A L-rhamnose isomerase; T 21.1 5E+02 0.017 26.7 10.4 127 240-396 71-216 (424)
41 2l69_A Rossmann 2X3 fold prote 20.4 1E+02 0.0035 25.3 4.0 21 381-401 10-30 (134)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=4.6e-83 Score=666.37 Aligned_cols=342 Identities=39% Similarity=0.614 Sum_probs=308.7
Q ss_pred CccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhhcCCCHHHHHHHHHHhccccceEeEEeecCCCce
Q 011810 112 SRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDELEGLNKDFKKMLSEHAEFRALSLKDILTSSDGTR 191 (477)
Q Consensus 112 ~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~~~l~~~~r~~L~~~~~~~~~~~~~~~~s~Dgt~ 191 (477)
++++|++|+++||++|+.++|+|+|||+|||+|+|+++ +.+|++||||||++|++|++.|.+..++++..+.|.|||+
T Consensus 16 ~~~~l~~~~~~~l~~~~~~~g~~~fra~qi~~w~~~~~--~~~~~~mt~l~k~~r~~l~~~~~~~~~~~~~~~~s~dgt~ 93 (404)
T 3rfa_A 16 GKINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYC--CDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTI 93 (404)
T ss_dssp -CEEGGGCCHHHHHHHHHHTTCCHHHHHHHHHHHHHSC--CCCGGGCTTSCHHHHHHHHHHEECCCCEEEEEEECTTSCE
T ss_pred CCCCcccCCHHHHHHHHHHcCCcchHHHHHHHHHHhcC--CCChHHhcccCHHHHHHHHhcCCCCCCceEEEEECCCCCE
Confidence 46899999999999999999999999999999999999 6799999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHhccc----CCCee
Q 011810 192 KILFMLDDGLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLSSE----VGSIT 267 (477)
Q Consensus 192 K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~----~~~v~ 267 (477)
||||++ ||..||||+||+ ++|.|+|||+|+|||++|.||+++..++.++++++||++|+..+..++... +.+++
T Consensus 94 K~l~~l-dg~~iEtV~i~~-~~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~ 171 (404)
T 3rfa_A 94 KWAIAV-GDQRVETVYIPE-DDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPIT 171 (404)
T ss_dssp EEEEEE-TTEEEEEEEEEC-SSCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCS
T ss_pred EEEEEc-CCceEEEEEEec-CCCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcccccCCCcc
Confidence 999999 999999999998 589999999999999999999999998999999999999999887766421 24699
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCC
Q 011810 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRK 347 (477)
Q Consensus 268 nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~ 347 (477)
+|+||||||||+|++++.++++.+.+..|++++.++++|+|||+.|.+++|++..++.|+||||+++++.|++|+|++++
T Consensus 172 ~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~ 251 (404)
T 3rfa_A 172 NVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKK 251 (404)
T ss_dssp EEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGT
T ss_pred EEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhhcceEEecccCCCHHHHHHhcCCccC
Confidence 99999999999999999999997766579999999999999999999999999888899999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCC---eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHH
Q 011810 348 YKLGLLIETLREELHFKNNY---KVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEF 424 (477)
Q Consensus 348 ~~le~ile~l~~~l~~~~~~---~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f 424 (477)
++++++++++++| ..+.+. +|+++|+||+|+||+++++++|++|+++++++||||||||.++.++++|+.+++++|
T Consensus 252 ~~le~vl~ai~~~-~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~~VnLIpynP~~~~~~~~ps~e~i~~f 330 (404)
T 3rfa_A 252 YNIETFLAAVRRY-LEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRF 330 (404)
T ss_dssp SCHHHHHHHHHHH-HHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCEEEEEEECCCCTTCCCCBCCHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCCcEEEEeccCCCCCCCCCCCHHHHHHH
Confidence 9999999999874 667777 999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHhCCCeEEecCCCCCcccccccccccCCCC
Q 011810 425 RNILAGAGCTVFLRLSRGDDQMAACGQLGNPGAI 458 (477)
Q Consensus 425 ~~~L~~~Gi~v~vR~s~G~di~aaCGQL~~~~~~ 458 (477)
+++|+++|+.+++|.++|+||+||||||+.+...
T Consensus 331 ~~iL~~~Gi~vtiR~~~G~di~aaCGQL~~~~~~ 364 (404)
T 3rfa_A 331 SKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVID 364 (404)
T ss_dssp HHHHHHTTCEEEECCCCCC---------------
T ss_pred HHHHHHcCCcEEEcCCCCcccccccccchhhhhh
Confidence 9999999999999999999999999999877543
No 2
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.6e-30 Score=262.02 Aligned_cols=258 Identities=16% Similarity=0.169 Sum_probs=201.1
Q ss_pred hcCCCHHHHHHHHH-HhccccceEeEEeecCCCceEEEEEecCCCeeEEEEeccCCCceeEEEEec-CccCCCCCCCCCC
Q 011810 158 LEGLNKDFKKMLSE-HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ-VGCAMNCQFCYTG 235 (477)
Q Consensus 158 ~~~l~~~~r~~L~~-~~~~~~~~~~~~~~s~Dgt~K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq-~GCnl~C~FC~tg 235 (477)
.+|+|+++|+.|.+ .|.+.. . .....--++|.|+++ .||..+++++++. .++.+++++.+ .|||++|.||+++
T Consensus 17 ~~~~~~~~r~~l~~~~~~~~~-~-~s~~~~~~~~~~~l~--~~~~~~~~~~~~~-~~~~~l~i~~~~~gCnl~C~fC~~~ 91 (342)
T 2yx0_A 17 NPNMPKEVAELFRKQHYEIVG-R-HSGVKLCHWLKKSLT--EGRFCYKQKFYGI-HSHRCLQMTPVLAWCTHNCIFCWRP 91 (342)
T ss_dssp CCSSCHHHHHHHHHTTCEEEB-T-TEEECCCTTHHHHHH--HCCCCHHHHHHCC-CGGGEEEEESCSSCCSBCCTTCCCS
T ss_pred cCcchHHHHHHHhhCCceEec-c-ccceEeccccHhhhc--CCCccceeEEeee-cCCCeEEEEeChhhhhCcCcccCCC
Confidence 37899999999987 577642 1 111112267888775 7899999998876 46778888888 5999999999987
Q ss_pred CCC------CCcCCCHHHHHHHHHHHHHHhccc--------------CCCeeEEEEecCCcccCCHHHHHHHHHHHHHhc
Q 011810 236 RMG------LKRHLTAAEIVEQAVFARRLLSSE--------------VGSITNVVFMGMGEPLHNVENVIKAANIMVHEQ 295 (477)
Q Consensus 236 ~~g------~~r~Lt~eEIv~qv~~~~~~~~~~--------------~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~ 295 (477)
... ..+.++++||++++....+.+... ...+++|+|+|+||||+++ .+.++++.+. +.
T Consensus 92 ~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~-~l~~ll~~~~-~~ 169 (342)
T 2yx0_A 92 MENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP-YMGDLVEEFH-KR 169 (342)
T ss_dssp SSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-THHHHHHHHH-HT
T ss_pred CCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcccchh-hHHHHHHHHH-HC
Confidence 542 457799999999998765433211 0246889999669999996 6889888654 45
Q ss_pred CCCCCCCeEEEEcCCchHH-HHHHHhcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE
Q 011810 296 GLHFSPRKVTVSTSGLVPQ-LKQFLNES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372 (477)
Q Consensus 296 Gl~i~~r~ItvsTNGi~p~-i~~L~~~~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie 372 (477)
|+ +++++|||+.+. +++|.+.+ ...+.||||+++++.|+++++.+.++++++++++++. + .+.+.++.++
T Consensus 170 g~-----~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~-l-~~~g~~v~i~ 242 (342)
T 2yx0_A 170 GF-----TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLEL-M-RDLPTRTVVR 242 (342)
T ss_dssp TC-----EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHH-H-TTCSSEEEEE
T ss_pred CC-----cEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHH-H-HhCCCCEEEE
Confidence 76 599999999865 67777643 6678999999999999999987767889999999997 3 5668899999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC-CeEEEEeecCCCCC-----CCCCCcHHHHHHHHHHHHhC
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIP-CKINLISFNPHCGS-----QFTPTTDEKMIEFRNILAGA 431 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~-~~VnLipynp~~~~-----~~~~ps~e~l~~f~~~L~~~ 431 (477)
+++++|.|++ +++++++++++++ .+|+++||+|.+.. .+.+|+.+++.+|.+.+.+.
T Consensus 243 ~~l~~g~n~~--~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~ 305 (342)
T 2yx0_A 243 LTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKH 305 (342)
T ss_dssp EEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTT
T ss_pred EEEECCccHH--HHHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHh
Confidence 9999999987 4899999999875 58999999987643 35688899999999999875
No 3
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.94 E-value=8.1e-26 Score=215.97 Aligned_cols=198 Identities=24% Similarity=0.395 Sum_probs=162.0
Q ss_pred cCccCCCCCCCCCCCC---CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCC
Q 011810 222 QVGCAMNCQFCYTGRM---GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLH 298 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~---g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~ 298 (477)
+.|||++|.||+.+.. ...+.++.+++++++....+.+. .++..|.|+| |||+++++.+.++++.+ ++.|+.
T Consensus 26 t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~i~~~G-GEP~l~~~~l~~l~~~~-~~~~~~ 100 (245)
T 3c8f_A 26 FQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMN---ASGGGVTASG-GEAILQAEFVRDWFRAC-KKEGIH 100 (245)
T ss_dssp ESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHT---STTCEEEEEE-SCGGGGHHHHHHHHHHH-HTTTCC
T ss_pred eCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhc---CCCCeEEEEC-CCcCCCHHHHHHHHHHH-HHcCCc
Confidence 5699999999998742 23567899999999876554431 2467899999 99999988788999865 455764
Q ss_pred CCCCeEEEEcCCch----HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEE
Q 011810 299 FSPRKVTVSTSGLV----PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYV 374 (477)
Q Consensus 299 i~~r~ItvsTNGi~----p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyv 374 (477)
+++.|||+. +.+.++.+..+ .+.+|+++.+++.++++++.+ +++++++++. ..+.+.++.++++
T Consensus 101 -----i~i~Tng~~~~~~~~~~~l~~~~~-~v~isld~~~~~~~~~~~~~~----~~~~~~~i~~--l~~~g~~v~i~~~ 168 (245)
T 3c8f_A 101 -----TCLDTNGFVRRYDPVIDELLEVTD-LVMLDLKQMNDEIHQNLVGVS----NHRTLEFAKY--LANKNVKVWIRYV 168 (245)
T ss_dssp -----EEEEECCCCCCCCHHHHHHHHTCS-EEEEECCCSSHHHHHHHHSSC----SHHHHHHHHH--HHHHTCCEEEEEE
T ss_pred -----EEEEeCCCcCcCHHHHHHHHHhCC-EEEEeCCCCCHHHhhhccCCC----HHHHHHHHHH--HHhcCCEEEEEEe
Confidence 999999953 56778877654 468999999999999998743 4899999997 3567889999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCC--CeEEEEeecCCCCC------------CCCCCcHHHHHHHHHHHHhCCCeEE
Q 011810 375 MLAGVNDSFDDAKRLIGLVQGIP--CKINLISFNPHCGS------------QFTPTTDEKMIEFRNILAGAGCTVF 436 (477)
Q Consensus 375 LI~GvNDs~ed~~~La~ll~~l~--~~VnLipynp~~~~------------~~~~ps~e~l~~f~~~L~~~Gi~v~ 436 (477)
+++|+||+.+++.++++++++++ ..+++.||+|.+.. .+++|+.++++++.+.+++.|+.|+
T Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~ 244 (245)
T 3c8f_A 169 VVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVM 244 (245)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCBC
T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHHHHHHHHhcCCeec
Confidence 99999999999999999999887 47899999986532 3578899999999999999999764
No 4
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=4.1e-27 Score=235.80 Aligned_cols=265 Identities=16% Similarity=0.221 Sum_probs=178.9
Q ss_pred CCHHHHHHHHH-HhccccceEeEEeecCCCceEEEEEecCCCeeEEEEeccCCCceeEEEEec-CccCCCCCCCCCCCC-
Q 011810 161 LNKDFKKMLSE-HAEFRALSLKDILTSSDGTRKILFMLDDGLVIETVVIPCNRGRTTVCVSSQ-VGCAMNCQFCYTGRM- 237 (477)
Q Consensus 161 l~~~~r~~L~~-~~~~~~~~~~~~~~s~Dgt~K~l~~l~DG~~IEtVlip~~~~r~tlCVSsq-~GCnl~C~FC~tg~~- 237 (477)
.|+.+++.|.. .|.+.. .....--+.|.|.+. .+|..+++++++. ..+.++|++++ .|||++|.||+++..
T Consensus 2 ~~~~~~~~l~~~gy~~~~---~s~~~~~~w~~~~l~--~~~~~~~~~~~~~-~~~~~l~i~~t~~~Cn~~C~fC~~~~~~ 75 (311)
T 2z2u_A 2 IPEEIYKILRKQRYQIDG---HTAVKLCGWVRKKML--EDKNCYKSKFYGI-ETHRCIQCTPSVIWCQQNCIFCWRVLPR 75 (311)
T ss_dssp CCHHHHHHHHTTTCEEET---TEEEECCTTHHHHHT--TCCCCHHHHHHCC-CGGGEEEEESCSSCCSCC----------
T ss_pred CchHHHHHHHhcCceeec---ccceeeccChHhhhc--CCCceEEEEEeee-cCCCeEEeccChhHHhCcCcccCCCCCC
Confidence 36677777775 355533 111111244555442 6788888887775 46788999999 799999999997741
Q ss_pred --C-------CCcCCCHHHHHHHHHHHHHHhccc---------------CCCeeEEEEecCCcccCCHHHHHHHHHHHHH
Q 011810 238 --G-------LKRHLTAAEIVEQAVFARRLLSSE---------------VGSITNVVFMGMGEPLHNVENVIKAANIMVH 293 (477)
Q Consensus 238 --g-------~~r~Lt~eEIv~qv~~~~~~~~~~---------------~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~ 293 (477)
+ ..+.++++|+++++....+.+... ...+++|+|+|+||||++. .+.++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~i~~s~gGEPll~~-~l~~li~~~~- 153 (311)
T 2z2u_A 76 DIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVAISLSGEPTLYP-YLDELIKIFH- 153 (311)
T ss_dssp ------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEEECSSSCGGGST-THHHHHHHHH-
T ss_pred cccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCEEEEeCCcCccchh-hHHHHHHHHH-
Confidence 1 247799999999887654322100 1246789999449999985 5888888654
Q ss_pred hcCCCCCCCeEEEEcCCchHHH-HHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE
Q 011810 294 EQGLHFSPRKVTVSTSGLVPQL-KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372 (477)
Q Consensus 294 ~~Gl~i~~r~ItvsTNGi~p~i-~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie 372 (477)
+.|+ +++++|||+.+.. ++| +...+.||||+++++.++++++. .++++++++++++. + .+.+ ++.++
T Consensus 154 ~~g~-----~~~l~TNG~~~~~l~~L---~~~~v~isld~~~~~~~~~i~~~-~~~~~~~v~~~i~~-l-~~~g-~v~i~ 221 (311)
T 2z2u_A 154 KNGF-----TTFVVSNGILTDVIEKI---EPTQLYISLDAYDLDSYRRICGG-KKEYWESILNTLDI-L-KEKK-RTCIR 221 (311)
T ss_dssp HTTC-----EEEEEECSCCHHHHHHC---CCSEEEEECCCSSTTTC----CC-CHHHHHHHHHHHHH-H-TTSS-SEEEE
T ss_pred HCCC-----cEEEECCCCCHHHHHhC---CCCEEEEEeecCCHHHHHHHhCC-ccchHHHHHHHHHH-H-HhcC-CEEEE
Confidence 4576 4999999998543 333 44577899999999999999876 44679999999997 3 5566 89999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC-----CCCcHHHHHHHHHHHHh-CCCeEEecCCCCCcc
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF-----TPTTDEKMIEFRNILAG-AGCTVFLRLSRGDDQ 445 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~-----~~ps~e~l~~f~~~L~~-~Gi~v~vR~s~G~di 445 (477)
+++++|+|| ++++++++++++++ .|+++||+|.+...+ .+|+.+++.+|.+.+.+ .|+.+. |...
T Consensus 222 ~~~~~g~n~---~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~-----~~~~ 293 (311)
T 2z2u_A 222 TTLIRGYND---DILKFVELYERADVHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSSYKLI-----DDSE 293 (311)
T ss_dssp EEECTTTTC---CGGGTHHHHHHHTCSEEEEEECC------------CCCCHHHHHHHHHHHHTSSSEEEE-----EEEG
T ss_pred EEEECCcch---hHHHHHHHHHHcCCCEEEEEeeEEccccccccccccCCCHHHHHHHHHHHHHhcCceEE-----eccC
Confidence 999999998 68889999988764 799999999865543 58899999999999987 686653 4444
Q ss_pred cccccccc
Q 011810 446 MAACGQLG 453 (477)
Q Consensus 446 ~aaCGQL~ 453 (477)
...|..+.
T Consensus 294 ~~~~~l~~ 301 (311)
T 2z2u_A 294 DSRVALLQ 301 (311)
T ss_dssp GGTEEEEE
T ss_pred cceEEEEe
Confidence 45666554
No 5
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.87 E-value=1.9e-20 Score=189.77 Aligned_cols=233 Identities=18% Similarity=0.240 Sum_probs=165.6
Q ss_pred eeEEEEecCccCCCCCCCCCCCC--------CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHH
Q 011810 215 TTVCVSSQVGCAMNCQFCYTGRM--------GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIK 286 (477)
Q Consensus 215 ~tlCVSsq~GCnl~C~FC~tg~~--------g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~ 286 (477)
..++++.+.+||++|.||+.... .....++.+|+.+.+..+.+ .++..|.|+| ||||++.+ +.+
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~------~g~~~i~~tG-GEPll~~~-l~~ 85 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE------LGVKKIRITG-GEPLMRRD-LDV 85 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH------TTCCEEEEES-SCGGGSTT-HHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH------CCCCEEEEeC-CCccchhh-HHH
Confidence 46788889999999999997651 12356899998887776543 3678899999 99999976 568
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh
Q 011810 287 AANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK 364 (477)
Q Consensus 287 ~i~~l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~ 364 (477)
+++.+.+..++ ..+++.|||+. +.+.+|.+.+...+.||||+.+++.++++++.. .++++++++++. ..+
T Consensus 86 li~~~~~~~~~----~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~--~~~~~v~~~i~~--l~~ 157 (340)
T 1tv8_A 86 LIAKLNQIDGI----EDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRN--IKATTILEQIDY--ATS 157 (340)
T ss_dssp HHHHHTTCTTC----CEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSC--CCHHHHHHHHHH--HHH
T ss_pred HHHHHHhCCCC----CeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCC--CCHHHHHHHHHH--HHH
Confidence 88865433232 26999999985 456667776655678999999999999988642 368999999997 456
Q ss_pred cCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCC-----CCCCcHHHHHHHHHHHHh--------C
Q 011810 365 NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQ-----FTPTTDEKMIEFRNILAG--------A 431 (477)
Q Consensus 365 ~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~-----~~~ps~e~l~~f~~~L~~--------~ 431 (477)
.+.++.+++++++|.|+. ++.+++++++++++.+.++.+.|.++.. ...+..+.++.+.+.+.. .
T Consensus 158 ~g~~v~i~~vv~~g~n~~--ei~~~~~~~~~~g~~~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~ 235 (340)
T 1tv8_A 158 IGLNVKVNVVIQKGINDD--QIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFG 235 (340)
T ss_dssp TTCEEEEEEEECTTTTGG--GHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHSCEEEECCSSTT
T ss_pred CCCCEEEEEEEeCCCCHH--HHHHHHHHHHhcCCeEEEEEeeEcCCCccchhhcCCCHHHHHHHHHhhCCccccccCCCC
Confidence 778999999999998864 7999999999998888888888876432 122334444444443210 0
Q ss_pred CCeEEecC-----------CCCCcccccccccccCCCC--CCCccCC
Q 011810 432 GCTVFLRL-----------SRGDDQMAACGQLGNPGAI--QAPLLRV 465 (477)
Q Consensus 432 Gi~v~vR~-----------s~G~di~aaCGQL~~~~~~--~~~~~~~ 465 (477)
+.....+. +.....|++|..++...++ .||+...
T Consensus 236 ~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~dG~v~pC~~~~ 282 (340)
T 1tv8_A 236 EVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFAT 282 (340)
T ss_dssp CSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEESSSCCS
T ss_pred CCCeEEEECCCCeEEEEECCCCCccccCCCcEEECCCccEEeCCCCC
Confidence 11111221 1113457789888777766 7887543
No 6
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.84 E-value=4.6e-20 Score=170.67 Aligned_cols=156 Identities=20% Similarity=0.323 Sum_probs=128.7
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCC
Q 011810 268 NVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPIN 345 (477)
Q Consensus 268 nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~ 345 (477)
+|+|+| ||||++++.+.++++.+ ++.|+. ++++|||++ +.++++++..+ .+.+|||+++++.|+++++..
T Consensus 6 ~v~~tG-GEPll~~~~~~~l~~~~-~~~g~~-----~~l~TNG~l~~~~~~~l~~~~d-~v~isld~~~~~~~~~~~g~~ 77 (182)
T 3can_A 6 GVTFCG-GEPLLHPEFLIDILKRC-GQQGIH-----RAVDTTLLARKETVDEVMRNCE-LLLIDLKSMDSTVHQTFCDVP 77 (182)
T ss_dssp CEEECS-STGGGSHHHHHHHHHHH-HHTTCC-----EEEECTTCCCHHHHHHHHHTCS-EEEEECCCSCHHHHHHHHSSC
T ss_pred EEEEEc-ccccCCHHHHHHHHHHH-HHCCCc-----EEEECCCCCCHHHHHHHHhhCC-EEEEECCCCCHHHHHHHhCCC
Confidence 567999 99999998777999854 556775 999999985 35677777654 467999999999999999743
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC-C--CeEEEEeecCCCCC-----------
Q 011810 346 RKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGI-P--CKINLISFNPHCGS----------- 411 (477)
Q Consensus 346 ~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l-~--~~VnLipynp~~~~----------- 411 (477)
++.++++++. + .+.+.++.+++++++|+||+.+++++++++++++ + ..++++||+|.+..
T Consensus 78 ----~~~i~~~i~~-l-~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~ 151 (182)
T 3can_A 78 ----NELILKNIRR-V-AEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNP 151 (182)
T ss_dssp ----SHHHHHHHHH-H-HHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---------------
T ss_pred ----HHHHHHHHHH-H-HhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcc
Confidence 4899999997 3 5578899999999999999999999999999998 6 47999999997543
Q ss_pred -CCCCCcHHH--HHHHHHHHHhCCCeEEe
Q 011810 412 -QFTPTTDEK--MIEFRNILAGAGCTVFL 437 (477)
Q Consensus 412 -~~~~ps~e~--l~~f~~~L~~~Gi~v~v 437 (477)
++++|+.++ ++++++.+++.|+.+++
T Consensus 152 ~~~~~~~~e~~~l~~~~~~~~~~g~~~~i 180 (182)
T 3can_A 152 KGYKMQTPSEEVQQQCIQILTDYGLKATI 180 (182)
T ss_dssp ---CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCceEe
Confidence 235777777 99999999999999887
No 7
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.79 E-value=3.1e-18 Score=179.33 Aligned_cols=215 Identities=17% Similarity=0.181 Sum_probs=148.5
Q ss_pred CCeeEEEEeccCCCceeEEEEecCccCCCCCCCCCCCCCC--CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcc
Q 011810 200 GLVIETVVIPCNRGRTTVCVSSQVGCAMNCQFCYTGRMGL--KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEP 277 (477)
Q Consensus 200 G~~IEtVlip~~~~r~tlCVSsq~GCnl~C~FC~tg~~g~--~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEP 277 (477)
+..++.+..+| ..+++++.+.+||++|.||+.+.... .+.++.+++.+.+..+.+ ..++..|+|+| |||
T Consensus 103 ~~~~~gl~hry---p~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~-----~~gi~~V~ltG-GEP 173 (416)
T 2a5h_A 103 DSPVPGLTHRY---PDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRN-----TPQVRDVLLSG-GDA 173 (416)
T ss_dssp SCSBTTEECCS---SSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHT-----CTTCCEEEEEE-SCT
T ss_pred cCcccCccccC---CCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHh-----cCCCcEEEEEC-CCC
Confidence 45666677665 24566777899999999999876332 256899888777765432 14688999999 999
Q ss_pred cCCHH-HHHHHHHHHHHhcCCCCCCCeEEEEcCC-c------hHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 278 LHNVE-NVIKAANIMVHEQGLHFSPRKVTVSTSG-L------VPQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 278 Lln~d-~vi~~i~~l~~~~Gl~i~~r~ItvsTNG-i------~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
|++.+ .+.++++.+.+..++ +.+++.||| + .+.+.+.+... ..+.||+|+.++ ++++
T Consensus 174 ll~~d~~L~~il~~l~~~~~v----~~i~i~Tng~~~~p~~it~e~l~~L~~~-~~v~Isl~~~~~---~ei~------- 238 (416)
T 2a5h_A 174 LLVSDETLEYIIAKLREIPHV----EIVRIGSRTPVVLPQRITPELVNMLKKY-HPVWLNTHFNHP---NEIT------- 238 (416)
T ss_dssp TSSCHHHHHHHHHHHHTSTTC----CEEEEECSHHHHCGGGCCHHHHHHHGGG-CSEEEEECCCSG---GGCC-------
T ss_pred CCCCHHHHHHHHHHHHhcCCc----cEEEEEecccccccccCCHHHHHHHHhc-CcEEEEEecCCH---HHHh-------
Confidence 99976 577888866543233 369999999 2 14444433333 345689988765 2232
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCC-CCCCCCCCcHHHHHHHHHHH
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPH-CGSQFTPTTDEKMIEFRNIL 428 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~-~~~~~~~ps~e~l~~f~~~L 428 (477)
++++++++. ..+.|..+.+++++++|+||+.+++.++++++..+++....+.+.|. .+..+...+.++..++.+.+
T Consensus 239 -~~v~~ai~~--L~~aGi~v~i~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l 315 (416)
T 2a5h_A 239 -EESTRACQL--LADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGL 315 (416)
T ss_dssp -HHHHHHHHH--HHHTTCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTT
T ss_pred -HHHHHHHHH--HHHcCCEEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccccCCcccHHHHHHHH
Confidence 789999997 36678899999999999999999999999999988876655555553 34443334455555555555
Q ss_pred HhC--C--CeEEecCCC
Q 011810 429 AGA--G--CTVFLRLSR 441 (477)
Q Consensus 429 ~~~--G--i~v~vR~s~ 441 (477)
.+. | ++.+++...
T Consensus 316 ~~~~~G~~~p~~v~~~p 332 (416)
T 2a5h_A 316 RGHTSGYCVPTFVVDAP 332 (416)
T ss_dssp BTTBCGGGCCEEEEEET
T ss_pred HHHCCCCCCceEEEECC
Confidence 543 4 345555544
No 8
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.78 E-value=1.1e-18 Score=177.80 Aligned_cols=229 Identities=17% Similarity=0.219 Sum_probs=155.4
Q ss_pred chhhcCCC-HHHHHHHHHHhccccceEeEEeecCC-CceEEEEEecC-------CCeeEEEEeccCCCceeEEEEecCcc
Q 011810 155 TDELEGLN-KDFKKMLSEHAEFRALSLKDILTSSD-GTRKILFMLDD-------GLVIETVVIPCNRGRTTVCVSSQVGC 225 (477)
Q Consensus 155 ~~~~~~l~-~~~r~~L~~~~~~~~~~~~~~~~s~D-gt~K~l~~l~D-------G~~IEtVlip~~~~r~tlCVSsq~GC 225 (477)
|++|+|++ +++++++.+...+..-++.....+.| .+.+.|+.+.| |..|... .-|..+.||
T Consensus 2 ~~~m~~~~~~~i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~g~~v~~~----------~~i~~t~~C 71 (350)
T 3t7v_A 2 IQKMALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLN----------CFIYFSTYC 71 (350)
T ss_dssp ----------CHHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHTTEEEEE----------EEEEEECCC
T ss_pred hhhHhHHHHHHHHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHCCCEEEEE----------EeeecCCCc
Confidence 56777777 66666666544443322222222222 34445554444 4333211 124557999
Q ss_pred CCCCCCCCCCCCC-C-CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCC--HHHHHHHHHHHHHhcCCCCC
Q 011810 226 AMNCQFCYTGRMG-L-KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHN--VENVIKAANIMVHEQGLHFS 300 (477)
Q Consensus 226 nl~C~FC~tg~~g-~-~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln--~d~vi~~i~~l~~~~Gl~i~ 300 (477)
+.+|.||...... . ...++++||++++....+ .+++.|+|.| || |+.+ .+.+.++++.+.+..++.
T Consensus 72 ~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~------~G~~~i~l~g-Ge~p~~~~~~~~~~~l~~~ik~~~~i~-- 142 (350)
T 3t7v_A 72 KNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKG------AGFHMVDLTM-GEDPYYYEDPNRFVELVQIVKEELGLP-- 142 (350)
T ss_dssp CCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTT------SCCSEEEEEE-CCCHHHHHSTHHHHHHHHHHHHHHCSC--
T ss_pred CCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHH------CCCCEEEEee-CCCCccccCHHHHHHHHHHHHhhcCce--
Confidence 9999999965432 2 234899999999976532 4788999998 98 9874 678899999887666765
Q ss_pred CCeEEEEcCCc-h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCC
Q 011810 301 PRKVTVSTSGL-V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG 378 (477)
Q Consensus 301 ~r~ItvsTNGi-~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~G 378 (477)
++++ .|. . +.+++|.+.+-..+.+++++.+++.++++.| ++++++.+++++. ..+.|.++ ...+|-|
T Consensus 143 ---i~~s-~g~~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~---~~~~~~~l~~i~~--a~~~Gi~v--~~~~i~G 211 (350)
T 3t7v_A 143 ---IMIS-PGLMDNATLLKAREKGANFLALYQETYDTELYRKLRV---GQSFDGRVNARRF--AKQQGYCV--EDGILTG 211 (350)
T ss_dssp ---EEEE-CSSCCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHST---TCCHHHHHHHHHH--HHHHTCEE--EEEEEES
T ss_pred ---EEEe-CCCCCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCC---CCCHHHHHHHHHH--HHHcCCeE--ccceEee
Confidence 6654 454 3 4678888777445568999999999999987 3678999999996 46677764 4567778
Q ss_pred CCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCCC
Q 011810 379 VNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQF 413 (477)
Q Consensus 379 vNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~~ 413 (477)
++++.+++.+.++++++++. .|.+.+|+|.+++++
T Consensus 212 lget~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l 247 (350)
T 3t7v_A 212 VGNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPL 247 (350)
T ss_dssp SSCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTT
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcC
Confidence 89999999999999999976 599999999877653
No 9
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.77 E-value=1.7e-17 Score=168.06 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=146.4
Q ss_pred EEecCccCCCCCCCCCCCCCC---CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCc-ccCCHHHHHHHHHHHHHh
Q 011810 219 VSSQVGCAMNCQFCYTGRMGL---KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGE-PLHNVENVIKAANIMVHE 294 (477)
Q Consensus 219 VSsq~GCnl~C~FC~tg~~g~---~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGE-PLln~d~vi~~i~~l~~~ 294 (477)
|+.+.|||++|.||+...... ...++.+||++++..+.+ .+++.|+|+| || |+++.+.+.++++.+.+.
T Consensus 57 i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~------~g~~~i~~~g-Ge~p~~~~~~~~~li~~i~~~ 129 (348)
T 3iix_A 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQ------FGAKTIVLQS-GEDPYXMPDVISDIVKEIKKM 129 (348)
T ss_dssp EEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHH------TTCSEEEEEE-SCCGGGTTHHHHHHHHHHHTT
T ss_pred eEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHH------CCCCEEEEEe-CCCCCccHHHHHHHHHHHHhc
Confidence 455899999999999654321 225899999999987543 3678899999 99 999988999999976543
Q ss_pred cCCCCCCCeEEEEcCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEE
Q 011810 295 QGLHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY 373 (477)
Q Consensus 295 ~Gl~i~~r~ItvsTNGi~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~iey 373 (477)
++ .+++++..+. +.+++|.+.+...+.+++++.+++.++++.|.. ++++++++++. ..+.|.+ +.+
T Consensus 130 -~~-----~i~~s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~---~~~~~~~~i~~--~~~~Gi~--v~~ 196 (348)
T 3iix_A 130 -GV-----AVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDT---SFENRLNCLLT--LKELGYE--TGA 196 (348)
T ss_dssp -SC-----EEEEECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTS---CHHHHHHHHHH--HHHTTCE--EEE
T ss_pred -Cc-----eEEEecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCc---CHHHHHHHHHH--HHHhCCe--ecc
Confidence 54 3665433333 456777777755567999999999999998754 78999999996 4666754 666
Q ss_pred EEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC---CCCCcHHHHHHHHHHHHh
Q 011810 374 VMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ---FTPTTDEKMIEFRNILAG 430 (477)
Q Consensus 374 vLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~---~~~ps~e~l~~f~~~L~~ 430 (477)
.++.|+ +++.+++.++++++++++. .+.+.||+|.++++ .++++.+++.+....++.
T Consensus 197 ~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~ 258 (348)
T 3iix_A 197 GSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRI 258 (348)
T ss_dssp CBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHH
T ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHH
Confidence 778888 8999999999999998875 68999999988765 355677776666555543
No 10
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.62 E-value=6.7e-14 Score=143.58 Aligned_cols=188 Identities=15% Similarity=0.191 Sum_probs=142.9
Q ss_pred cCccCCCCCCCCCCCC---C--CCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC-ccc-CCHHHHHHHHHHHHHh
Q 011810 222 QVGCAMNCQFCYTGRM---G--LKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-EPL-HNVENVIKAANIMVHE 294 (477)
Q Consensus 222 q~GCnl~C~FC~tg~~---g--~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG-EPL-ln~d~vi~~i~~l~~~ 294 (477)
+.|||++|.||..+.. + ..+.++++||++.+..+.+ .+++.|.|.|.| ||. +..+.+.++++.+. +
T Consensus 73 t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~~~gg~~~p~~~~~~~l~~ll~~ik-~ 145 (369)
T 1r30_A 73 TGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA------AGSTRFCMGAAWKNPHERDMPYLEQMVQGVK-A 145 (369)
T ss_dssp CSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHH------TTCSEEEEEECCSSCCTTTHHHHHHHHHHHH-H
T ss_pred CCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHH------cCCcEEEEEeCCCCCCcCCHHHHHHHHHHHH-H
Confidence 7999999999997652 1 2345899999998876543 257788888743 565 46788999998665 4
Q ss_pred cCCCCCCCeEEEEcCCch--HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEE
Q 011810 295 QGLHFSPRKVTVSTSGLV--PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFE 372 (477)
Q Consensus 295 ~Gl~i~~r~ItvsTNGi~--p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ie 372 (477)
.|+. +++ |||++ +.+++|.+.+-..+.++|++ +++.++++.+ ..++++++++++. ..+.|.+ +.
T Consensus 146 ~g~~-----i~~-t~G~l~~e~l~~L~~aGvd~v~i~les-~~e~~~~i~~---~~~~~~~l~~i~~--a~~~Gi~--v~ 211 (369)
T 1r30_A 146 MGLE-----ACM-TLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLEK--VRDAGIK--VC 211 (369)
T ss_dssp TTSE-----EEE-ECSSCCHHHHHHHHHHCCCEEECCCBS-CHHHHHHHCC---SSCHHHHHHHHHH--HHHHHCE--EE
T ss_pred cCCe-----EEE-ecCCCCHHHHHHHHHCCCCEEeecCcC-CHHHHHHhCC---CCCHHHHHHHHHH--HHHcCCe--ee
Confidence 5664 665 99975 46788888775567899999 9999998876 3578999999997 3555654 55
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC--C-eEEEEeecCCCCCC---CCCCcHHHHHHHHHHHHh
Q 011810 373 YVMLAGVNDSFDDAKRLIGLVQGIP--C-KINLISFNPHCGSQ---FTPTTDEKMIEFRNILAG 430 (477)
Q Consensus 373 yvLI~GvNDs~ed~~~La~ll~~l~--~-~VnLipynp~~~~~---~~~ps~e~l~~f~~~L~~ 430 (477)
..+|.|++++.+++.+++++++.++ + .|.+.+|.|.+++. ..+++.+++.+....++.
T Consensus 212 ~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
T 1r30_A 212 SGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARI 275 (369)
T ss_dssp CCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHH
T ss_pred eeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999985 2 77888888887764 356778877777665544
No 11
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.54 E-value=3.2e-13 Score=135.27 Aligned_cols=183 Identities=14% Similarity=0.209 Sum_probs=118.6
Q ss_pred ceeEEEEecCccCCCCCCCCCCCC-CCCcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCC------HHHHHH
Q 011810 214 RTTVCVSSQVGCAMNCQFCYTGRM-GLKRHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHN------VENVIK 286 (477)
Q Consensus 214 r~tlCVSsq~GCnl~C~FC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln------~d~vi~ 286 (477)
+.+++|.++.|||++|.||..+.. +..+..++++|++++....+ .++..|+|+| ++++.. .+.+.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~------~G~~ei~l~g-~~~~~yG~~~~~~~~l~~ 75 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLK------EGKKEIILVA-QDTTSYGIDLYRKQALPD 75 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHH------TTCCEEEEEC-TTGGGTTHHHHSSCCHHH
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHH------CCCcEEEEEe-EcccccCCCCCcHHHHHH
Confidence 467888889999999999998753 44578899999999986543 2677888987 555432 234666
Q ss_pred HHHHHHHhcCCCCCCCeEEE-EcCCc--hHH-HHHHHhcC--CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHH
Q 011810 287 AANIMVHEQGLHFSPRKVTV-STSGL--VPQ-LKQFLNES--NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREE 360 (477)
Q Consensus 287 ~i~~l~~~~Gl~i~~r~Itv-sTNGi--~p~-i~~L~~~~--d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~ 360 (477)
+++.+.+..|+. .+.+ +||+. .+. ++.+.+.+ -..+.+++++.+++.++++ ++.++.++++++++.
T Consensus 76 Ll~~l~~~~gi~----~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m---~r~~t~e~~~~~i~~- 147 (304)
T 2qgq_A 76 LLRRLNSLNGEF----WIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLM---GRTKSSEELKKMLSS- 147 (304)
T ss_dssp HHHHHHTSSSSC----EEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHT---TCCSCHHHHHHHHHH-
T ss_pred HHHHHHhcCCCc----EEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHh---CCCCCHHHHHHHHHH-
Confidence 666554433553 4655 46653 344 55555555 3467899999999998864 457889999999997
Q ss_pred HHhhcCCeEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC
Q 011810 361 LHFKNNYKVLFEYVMLAGV-NDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ 412 (477)
Q Consensus 361 l~~~~~~~V~ieyvLI~Gv-NDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~ 412 (477)
+ .+....+.+.+.+|-|+ ++++++++++.+++++++. .+++.+|.|.+++.
T Consensus 148 l-~~~~~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~ 200 (304)
T 2qgq_A 148 I-RERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTV 200 (304)
T ss_dssp H-HHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----
T ss_pred H-HhhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCCh
Confidence 4 44222345566666666 6889999999999998875 79999999987764
No 12
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.35 E-value=8.5e-11 Score=124.13 Aligned_cols=202 Identities=11% Similarity=0.181 Sum_probs=140.3
Q ss_pred CccCCCCCCCCCCCCC-CC---cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCC
Q 011810 223 VGCAMNCQFCYTGRMG-LK---RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGL 297 (477)
Q Consensus 223 ~GCnl~C~FC~tg~~g-~~---r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl 297 (477)
.+|+.+|.||...... .. +....+++++++....+.+.. .++..|.|.| |+|++ +.+.+.++++.+.+..++
T Consensus 60 pfC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~--~~i~~i~fgG-Gtpt~l~~~~l~~ll~~i~~~~~~ 136 (457)
T 1olt_A 60 PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG--RHVSQLHWGG-GTPTYLNKAQISRLMKLLRENFQF 136 (457)
T ss_dssp CEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTT--CCEEEEEEEE-SCGGGSCHHHHHHHHHHHHHHSCE
T ss_pred CCCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCC--CceEEEEEeC-CCcccCCHHHHHHHHHHHHHhCCC
Confidence 3599999999976432 11 122356777777665443321 3588888888 99985 677888888877654332
Q ss_pred CCCCCeEEEEcCCc--h-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe-EEEEE
Q 011810 298 HFSPRKVTVSTSGL--V-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK-VLFEY 373 (477)
Q Consensus 298 ~i~~r~ItvsTNGi--~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~-V~iey 373 (477)
. ....++++||.- . +.++.|.+.+-..|.+++.+.+++..+.+. +.++.++++++++. .++.|.. +.+..
T Consensus 137 ~-~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~---R~~~~~~~~~ai~~--~r~~G~~~v~~dl 210 (457)
T 1olt_A 137 N-ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVN---REQDEEFIFALLNH--AREIGFTSTNIDL 210 (457)
T ss_dssp E-EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHT---CCCCHHHHHHHHHH--HHHTTCCSCEEEE
T ss_pred C-CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhC---CCCCHHHHHHHHHH--HHHcCCCcEEEEE
Confidence 1 112589999974 2 456666666656788999999999988764 45789999999996 4666765 65554
Q ss_pred EE-eCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCCC--------CCCCcHH----HHHHHHHHHHhCCCeE
Q 011810 374 VM-LAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGSQ--------FTPTTDE----KMIEFRNILAGAGCTV 435 (477)
Q Consensus 374 vL-I~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~~--------~~~ps~e----~l~~f~~~L~~~Gi~v 435 (477)
++ +|| ++.+++.+.++++..+++ +|.+.+|.+.++.. ...|+.+ .++.+.+.|.+.|+..
T Consensus 211 I~GlPg--et~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~ 284 (457)
T 1olt_A 211 IYGLPK--QTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQF 284 (457)
T ss_dssp EESCTT--CCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EcCCCC--CCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCeE
Confidence 33 454 779999999999998875 79999988766532 2345543 3445567788899864
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=98.04 E-value=3.9e-05 Score=78.79 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=103.5
Q ss_pred EEecCccCCCCCCCCCC-CCCCC----cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHH----HHHHHHH
Q 011810 219 VSSQVGCAMNCQFCYTG-RMGLK----RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVE----NVIKAAN 289 (477)
Q Consensus 219 VSsq~GCnl~C~FC~tg-~~g~~----r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d----~vi~~i~ 289 (477)
++.-.||.++|.||+.. ..+.. -....+|+++++....+ ......+.|.+.++.+|+ ..+ .+.++|+
T Consensus 111 ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~---~~~~~~~~i~~g~~TDpy-p~E~~~~ltr~~le 186 (368)
T 4fhd_A 111 IPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYIN---ERAPEITRFEAACTSDIV-GIDHLTHSLKKAIE 186 (368)
T ss_dssp CCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHH---HHTTSCEEEESCSSBCHH-HHHTTTCHHHHHHH
T ss_pred eCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHh---hcCCCceEEEEEcCCCcc-hhhHHHhHHHHHHH
Confidence 44469999999999943 12221 23567899988765322 112345566666677886 333 4556666
Q ss_pred HHHHhcCCCCCCCeEEEEcCCch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCe
Q 011810 290 IMVHEQGLHFSPRKVTVSTSGLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYK 368 (477)
Q Consensus 290 ~l~~~~Gl~i~~r~ItvsTNGi~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~ 368 (477)
.+.+..+. ++++.|=+.. ..+.++...+.+.+++||.. ++..+++-|. .-+.++=++++++ ..+.|.+
T Consensus 187 ~l~~~~~~-----~v~i~TKs~lid~L~~l~~~~~v~V~~Sitt--~~l~r~~EP~--aps~~~RL~Ai~~--l~~aGip 255 (368)
T 4fhd_A 187 FIGATDYG-----RLRFVTKYEHVDHLLDARHNGKTRFRFSINS--RYVINHFEPG--TSSFDGRLAAARK--VAGAGYK 255 (368)
T ss_dssp HHHHCSSE-----EEEEEESCCCCGGGTTCCCTTCEEEEEEECC--HHHHHHHCTT--SCCHHHHHHHHHH--HHHTTCE
T ss_pred HHHhCCCc-----eEEEEeCCcCHHHHHhcCcCCceEEEEEEcC--HHHHHHcCCC--CCCHHHHHHHHHH--HHHCCCe
Confidence 55443332 4899997753 33333333346788899975 6777778774 3467888999998 4678998
Q ss_pred EEEEE-EEeCCCCCCHHHHHHHHHHHh
Q 011810 369 VLFEY-VMLAGVNDSFDDAKRLIGLVQ 394 (477)
Q Consensus 369 V~iey-vLI~GvNDs~ed~~~La~ll~ 394 (477)
+.+.. .+||+ +|..++..++.+-+.
T Consensus 256 v~v~iaPIiP~-~~~~e~y~~lle~l~ 281 (368)
T 4fhd_A 256 LGFVVAPIYRH-EGWERGYFELFQELA 281 (368)
T ss_dssp EEEEEEEECCC-TTHHHHHHHHHHHHH
T ss_pred EEEEEeCcCCC-CCCHHHHHHHHHHHH
Confidence 87665 57897 556677777776443
No 14
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=85.32 E-value=7.5 Score=32.04 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCcHHHHHHHHHHHH
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~ 429 (477)
..++.+.+++ +.++++..+. .+++ |+.+-++..++|++.++..|-+|-|.. +..++++|.+..+
T Consensus 35 pqelkdsiee-lvkkynativ--vvvv----ddkewaekairfvkslgaqvliiiydq---------dqnrleefsrevr 98 (134)
T 2l69_A 35 PQELKDSIEE-LVKKYNATIV--VVVV----DDKEWAEKAIRFVKSLGAQVLIIIYDQ---------DQNRLEEFSREVR 98 (134)
T ss_dssp HHHHHHHHHH-HTTCCCCEEE--EEEC----SSHHHHHHHHHHHHHHCCCCEEEEECS---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhCCeEE--EEEE----ccHHHHHHHHHHHHhcCCeEEEEEEeC---------chhHHHHHHHHHH
Confidence 4678888888 5565554433 2332 678889999999999998888887764 3678999999999
Q ss_pred hCCCeEE
Q 011810 430 GAGCTVF 436 (477)
Q Consensus 430 ~~Gi~v~ 436 (477)
..|+.|.
T Consensus 99 rrgfevr 105 (134)
T 2l69_A 99 RRGFEVR 105 (134)
T ss_dssp HTTCCEE
T ss_pred hcCceEE
Confidence 9999874
No 15
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=77.37 E-value=50 Score=32.00 Aligned_cols=178 Identities=11% Similarity=0.007 Sum_probs=98.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCC-----cccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHH
Q 011810 241 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMG-----EPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQL 315 (477)
Q Consensus 241 r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmG-----EPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i 315 (477)
..++.+|.++.+....+ .+++.|-+.+ + +|.+. |. .+.++.+.+..+. ++.+.+. ..+.+
T Consensus 22 ~~~~~e~k~~i~~~L~~------~Gv~~IE~g~-~~~~~~~p~~~-d~-~~~~~~~~~~~~~-----~~~~l~~-~~~~i 86 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSE------AGLSVIETTS-FVSPKWVPQMG-DH-TEVLKGIQKFPGI-----NYPVLTP-NLKGF 86 (298)
T ss_dssp SCCCHHHHHHHHHHHHH------TTCSEECCEE-CCCTTTCGGGT-TH-HHHHHHSCCCTTC-----BCCEECC-SHHHH
T ss_pred CCCCHHHHHHHHHHHHH------cCcCEEEECC-CcCcccccccC-CH-HHHHHHHhhCCCC-----EEEEEcC-CHHhH
Confidence 45788888866655433 3666665543 4 67764 32 3444444322232 2333221 24578
Q ss_pred HHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCC----CCCCHHHHHHHHH
Q 011810 316 KQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG----VNDSFDDAKRLIG 391 (477)
Q Consensus 316 ~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~G----vNDs~ed~~~La~ 391 (477)
++.++.+-..+.+.+.+.+...+..+. ......++.+.+.++. .++.|.++.+.....=| --.+++.+.++++
T Consensus 87 ~~a~~ag~~~v~i~~~~sd~~~~~~~~-~~~~e~l~~~~~~i~~--a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 163 (298)
T 2cw6_A 87 EAAVAAGAKEVVIFGAASELFTKKNIN-CSIEESFQRFDAILKA--AQSANISVRGYVSCALGCPYEGKISPAKVAEVTK 163 (298)
T ss_dssp HHHHHTTCSEEEEEEESCHHHHHHHHS-CCHHHHHHHHHHHHHH--HHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHH
T ss_pred HHHHHCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHH--HHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHH
Confidence 888877744556766555433333332 2333456666777774 56778877654332211 0136788999999
Q ss_pred HHhcCCCe-EEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC--C--CeEEecCCCCC
Q 011810 392 LVQGIPCK-INLISFNPHCGSQFTPTTDEKMIEFRNILAGA--G--CTVFLRLSRGD 443 (477)
Q Consensus 392 ll~~l~~~-VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~--G--i~v~vR~s~G~ 443 (477)
.+.+.++. |+|- .+.| ..+++++.++.+.+++. + +.++.-...|.
T Consensus 164 ~~~~~Ga~~i~l~---DT~G----~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gl 213 (298)
T 2cw6_A 164 KFYSMGCYEISLG---DTIG----VGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQ 213 (298)
T ss_dssp HHHHTTCSEEEEE---ETTS----CCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSC
T ss_pred HHHHcCCCEEEec---CCCC----CcCHHHHHHHHHHHHHhCCCCeEEEEECCCCch
Confidence 99888863 4433 2222 23466677666666543 2 33455556665
No 16
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=63.89 E-value=1.1e+02 Score=29.46 Aligned_cols=166 Identities=7% Similarity=0.025 Sum_probs=88.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEec--CCc--ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHH
Q 011810 241 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMG--MGE--PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLK 316 (477)
Q Consensus 241 r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G--mGE--PLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~ 316 (477)
..++.++.++.+....+ .++..|-+.+ .++ |.+. + ..++++.+.+..+. ++.+.+ ...+.++
T Consensus 21 ~~~~~e~k~~i~~~L~~------~Gv~~IE~g~~~~~~~~p~~~-~-~~e~~~~i~~~~~~-----~v~~l~-~n~~~i~ 86 (295)
T 1ydn_A 21 RFVPTADKIALINRLSD------CGYARIEATSFVSPKWVPQLA-D-SREVMAGIRRADGV-----RYSVLV-PNMKGYE 86 (295)
T ss_dssp SCCCHHHHHHHHHHHTT------TTCSEEEEEECSCTTTCGGGT-T-HHHHHHHSCCCSSS-----EEEEEC-SSHHHHH
T ss_pred CCcCHHHHHHHHHHHHH------cCcCEEEEccCcCcccccccc-C-HHHHHHHHHhCCCC-----EEEEEe-CCHHHHH
Confidence 45888888777765422 3555555533 244 5443 2 34666655432233 454443 2256788
Q ss_pred HHHhcCCeEEEEeeCCCCHHHHhhH-cCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCC----CCCCHHHHHHHHH
Q 011810 317 QFLNESNCALAVSLNATTDEVRNWI-MPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAG----VNDSFDDAKRLIG 391 (477)
Q Consensus 317 ~L~~~~d~~LaISL~a~~~e~r~~I-~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~G----vNDs~ed~~~La~ 391 (477)
+.++.+-..+.+++.+. + .+.+. ........++.+.+.++. .++.|..|..+....-| .-.+++.+.++++
T Consensus 87 ~a~~~G~~~V~i~~~~S-~-~h~~~~~~~~~~e~~~~~~~~v~~--a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~ 162 (295)
T 1ydn_A 87 AAAAAHADEIAVFISAS-E-GFSKANINCTIAESIERLSPVIGA--AINDGLAIRGYVSCVVECPYDGPVTPQAVASVTE 162 (295)
T ss_dssp HHHHTTCSEEEEEEESC-H-HHHHHHTSSCHHHHHHHHHHHHHH--HHHTTCEEEEEEECSSEETTTEECCHHHHHHHHH
T ss_pred HHHHCCCCEEEEEEecC-H-HHHHHHcCCCHHHHHHHHHHHHHH--HHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHH
Confidence 88877643456666554 2 33322 111222234455555663 56778877644333211 1246888888988
Q ss_pred HHhcCCC-eEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhC
Q 011810 392 LVQGIPC-KINLISFNPHCGSQFTPTTDEKMIEFRNILAGA 431 (477)
Q Consensus 392 ll~~l~~-~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~ 431 (477)
.+.+.++ .|++- +..+ . .+++++.++.+.+++.
T Consensus 163 ~~~~~G~d~i~l~--Dt~G-~----~~P~~~~~lv~~l~~~ 196 (295)
T 1ydn_A 163 QLFSLGCHEVSLG--DTIG-R----GTPDTVAAMLDAVLAI 196 (295)
T ss_dssp HHHHHTCSEEEEE--ETTS-C----CCHHHHHHHHHHHHTT
T ss_pred HHHhcCCCEEEec--CCCC-C----cCHHHHHHHHHHHHHh
Confidence 8888876 45443 2222 2 3466666666666653
No 17
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=56.25 E-value=20 Score=37.20 Aligned_cols=111 Identities=19% Similarity=0.202 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCch----HHHHHHH----hc----CCeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV----PQLKQFL----NE----SNCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~----p~i~~L~----~~----~d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
+++.++|+.+.+... ++-|.|.|..+. ..+..++ ++ .++-+ +.++++.=.- .... .
T Consensus 78 ~~L~~~I~~~~~~~~----P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pV-i~v~tpgf~g-s~~~------G 145 (458)
T 3pdi_B 78 ENVVEALKTICERQN----PSVIGLLTTGLSETQGCDLHTALHEFRTQYEEYKDVPI-VPVNTPDFSG-CFES------G 145 (458)
T ss_dssp HHHHHHHHHHHHHTC----CSEEEEEECHHHHTTCTTHHHHHHHTTTSCCSCSCSCE-EEECCCTTSS-CHHH------H
T ss_pred HHHHHHHHHHHHhcC----CCEEEEECCcHHHHhcCCHHHHHHHHHHhccccCCCeE-EEeeCCCcCC-chhH------H
Confidence 678888887766543 456888777642 2333333 22 12322 4555443110 0111 2
Q ss_pred HHHHHHHHHHHHHhh---cCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 350 LGLLIETLREELHFK---NNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 350 le~ile~l~~~l~~~---~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
.+..++++-+++... ....-.-.+.+|+|.+-.+.|+.++.++++.++..++.+|
T Consensus 146 ~~~a~~al~~~l~~~~~~~~~~~~~~VNii~G~~~~~~D~~eik~lL~~~Gi~v~~~~ 203 (458)
T 3pdi_B 146 FAAAVKAIVETLVPERRDQVGKRPRQVNVLCSANLTPGDLEYIAESIESFGLRPLLIP 203 (458)
T ss_dssp HHHHHHHHHHHSSCSSSCTTCCCSSEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEES
T ss_pred HHHHHHHHHHHhhccccCcCCCCCCeEEEEeCCCCChHHHHHHHHHHHHcCCEEEEec
Confidence 455566665433221 0111111234677875578999999999999999998875
No 18
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=55.24 E-value=42 Score=30.84 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 382 s~ed~~~La~ll~~l~~~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
+++++.+|++.--.+ ..||+-.....++. ..-..++|+++.|++....+|+++++|....+
T Consensus 106 ~p~d~~~lve~Gv~i-~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~~~~Gv~v~~q~vP~d 170 (187)
T 3lfj_A 106 NIDTCKRVMDGGLPI-TTLNIGGVAKTPQRKGISQSVSLSEDEVKTLLELKTKYNVDVYLQMIPDS 170 (187)
T ss_dssp SHHHHHHHHHTTCCC-SEEEEEEBCCCTTSEECSSSBEECHHHHHHHHHHHHHHCCEEEECSSTTS
T ss_pred CHHHHHHHHHcCCCC-CEEEECCCCCCCCCEEEeccEeeCHHHHHHHHHHHhccCCEEEEEECCCC
Confidence 688888887633222 26887776544443 23345689999999888777999999986654
No 19
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=53.49 E-value=99 Score=27.59 Aligned_cols=83 Identities=16% Similarity=0.279 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC----CCCCCcHHHHHH
Q 011810 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIE 423 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~----~~~~ps~e~l~~ 423 (477)
++++.++.+.. ....+.++. ++.+ +++++.+|++ .+.+. .||+-..+..++. ..-..++++++.
T Consensus 64 sve~ai~~~~~--~~~~~~~v~---ll~k----~p~d~~~lve--~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~ 132 (165)
T 1vsq_C 64 DVAKMIRVYNN--PKYAGERVM---LLFT----NPTDVERLVE--GGVKITSVNVGGMAFRQGKTQVNNAVSVDEKDIEA 132 (165)
T ss_dssp CHHHHHHHHTC--GGGTTCEEE---EEES----SHHHHHHHHH--TTCCCSEEEEEECCCCTTSEECSSSCEECHHHHHH
T ss_pred EHHHHHHHHhc--cccCCcEEE---EEEC----CHHHHHHHHH--cCCCCCEEEECCCcCCCCCeEEeccEeeCHHHHHH
Confidence 46666666653 122344443 2444 6888887764 34443 6888776543332 234556899999
Q ss_pred HHHHHHhCCCeEEecCCCCC
Q 011810 424 FRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 424 f~~~L~~~Gi~v~vR~s~G~ 443 (477)
|++.... |+.+++|....+
T Consensus 133 lk~L~~~-Gv~v~~q~vP~d 151 (165)
T 1vsq_C 133 FKKLNAR-GIELEVRKVSTD 151 (165)
T ss_dssp HHHHHHT-TCEEEECSSTTS
T ss_pred HHHHHHC-CCEEEEEECCCC
Confidence 8776655 999999987654
No 20
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=53.37 E-value=22 Score=37.67 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhc--C--CeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNE--S--NCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~--~--d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
+++.++|+.+.+... ++-|.|.|..+. +.+ +++-++ . ++-+ |.++.+.=.- .... .
T Consensus 127 ~kL~~aI~~~~~~~~----P~~I~V~tTC~~eiIGdDi~~v~~~~~~~~~~p~g~pV-i~v~tpgf~g-s~~~------G 194 (519)
T 1qgu_B 127 NNMNLGLQNASALYK----PEIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAV-PHAHTPSFIG-SHVT------G 194 (519)
T ss_dssp HHHHHHHHHHHHHHC----CSEEEEEECHHHHHHTCCHHHHHHHHHHTTSSCTTSBC-CBCCCCTTSS-CHHH------H
T ss_pred HHHHHHHHHHHHhhC----CCEEEEeCCCcHHHhCCCHHHHHHHHHHhcCCCCCCcE-EEeeCCCcCC-ChhH------H
Confidence 677888877665542 345777776642 333 333333 1 2332 4555443110 1111 2
Q ss_pred HHHHHHHHHHHHHhh-cCCe-EEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 350 LGLLIETLREELHFK-NNYK-VLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 350 le~ile~l~~~l~~~-~~~~-V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
.+..++++-+++... ...+ -.-.+.+|+|+|....|+.+|.++++.++..++++|
T Consensus 195 ~~~a~~al~~~l~~~~~~~~~~~~~VNIlg~~~~~~gD~~eik~lL~~~Gi~v~~lp 251 (519)
T 1qgu_B 195 WDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCSLLS 251 (519)
T ss_dssp HHHHHHHHHHHHHTTCCCCTTSEEEEEEECCSCCCHHHHHHHHHHHHHHTCCEEESS
T ss_pred HHHHHHHHHHHhhccccccCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCeEEEec
Confidence 455666665534332 1110 112344678886548899999999999999998776
No 21
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=48.98 E-value=94 Score=27.72 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC----CCCCCcHHHHHH
Q 011810 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIE 423 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~----~~~~ps~e~l~~ 423 (477)
++++.++.++. ....+.++. ++.+ +++++.+|++ .+.+. .||+-..+..++. ..-..++++++.
T Consensus 61 sve~ai~~~~~--~~~~~~~v~---ll~k----~p~d~~~lve--~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~ 129 (164)
T 1nrz_A 61 SLEKAVAVYHN--PQYQDETVF---YLFT----NPHDVLTMVR--QGVQIATLNIGGMAWRPGKKQLTKAVSLDPQDIQA 129 (164)
T ss_dssp CHHHHHHHHTC--GGGTTCEEE---EEES----SHHHHHHHHT--TTCCCSEEEEEEBCCCTTCEEEETTEEECHHHHHH
T ss_pred EHHHHHHHHhc--ccCCCceEE---EEEC----CHHHHHHHHH--cCCCCCEEEECCCcCCCCCeEEeccEeeCHHHHHH
Confidence 46666666653 122344543 3444 6888877754 34443 6888776544333 233456899998
Q ss_pred HHHHHHhCCCeEEecCCCCC
Q 011810 424 FRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 424 f~~~L~~~Gi~v~vR~s~G~ 443 (477)
|++.... |+++++|....+
T Consensus 130 lk~L~~~-Gv~v~~q~vP~d 148 (164)
T 1nrz_A 130 FRELDKL-GVKLDLRVVASD 148 (164)
T ss_dssp HHHHHHT-TCEEEECSSTTS
T ss_pred HHHHHHC-CCEEEEEECcCC
Confidence 8776655 999999987654
No 22
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=48.82 E-value=68 Score=28.67 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCCc
Q 011810 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGDD 444 (477)
Q Consensus 382 s~ed~~~La~ll~~l~~~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~d 444 (477)
+++++.+|++.--.+ ..||+-..+..++. ..-..++++++.|++...+.|+++++|....+.
T Consensus 87 ~p~d~~~lv~~g~~i-~~vNvG~m~~~~g~~~i~~~v~v~~ed~~~lk~L~~~~Gv~v~~q~vP~d~ 152 (163)
T 3p3v_A 87 DLQDAKLLVEGGVPI-TEINIGNIHKTDDKVAITQFISLGETDKSAIRCLAHDHHVVFNTKTTPAGN 152 (163)
T ss_dssp SHHHHHHHHHTTCCC-CEEEEEEBCCCTTSEESSSSBEECHHHHHHHHHHHHTSCCEEECCCSSSCC
T ss_pred CHHHHHHHHHcCCCC-CEEEECCCcCCCCCEEEeccEeeCHHHHHHHHHHHHhcCCEEEEEECcCCC
Confidence 688888886632222 26887776554443 233456899999988776589999999876553
No 23
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=46.56 E-value=91 Score=27.78 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-eEEEEeecCCCCC----CCCCCcHHHHHH
Q 011810 349 KLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPC-KINLISFNPHCGS----QFTPTTDEKMIE 423 (477)
Q Consensus 349 ~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~-~VnLipynp~~~~----~~~~ps~e~l~~ 423 (477)
++++.++.+.. ....+.++. ++.+ +++++.+|++ .+.+. .||+-..+..++. ..-..++++++.
T Consensus 62 sve~ai~~~~~--~~~~~~~v~---ll~k----~p~d~~~lve--~Gv~i~~iNvG~m~~~~gk~~i~~~v~v~~ed~~~ 130 (163)
T 1ble_A 62 SVSKMAKAFHS--PRYEGVTAM---LLFE----NPSDIVSLIE--AGVPIKTVNVGGMRFENHRRQITKSVSVTEQDIKA 130 (163)
T ss_dssp CHHHHHHHHHC--STTTTCEEE---EEES----SSHHHHHHHT--TTCCCCEEEEEEBCCCTTSEECSSSBEECHHHHHH
T ss_pred EHHHHHHHHhc--ccCCCceEE---EEEC----CHHHHHHHHH--cCCCCCEEEECCCCCCCCCeEEeccEeeCHHHHHH
Confidence 56666666653 122334443 3444 5777777753 34443 6888776544332 234456899998
Q ss_pred HHHHHHhCCCeEEecCCCCC
Q 011810 424 FRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 424 f~~~L~~~Gi~v~vR~s~G~ 443 (477)
|++.... |+.+++|....+
T Consensus 131 l~~L~~~-Gv~v~~q~vP~d 149 (163)
T 1ble_A 131 FETLSDK-GVKLELRQLPSD 149 (163)
T ss_dssp HHHHHHT-TCEEEECSSTTS
T ss_pred HHHHHHC-CCEEEEEECCCC
Confidence 8776655 999999987654
No 24
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=44.94 E-value=29 Score=35.85 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-------HHH-HHHHhcC----CeEEEEeeCCCCHHHHhhHcCCCCCCc
Q 011810 282 ENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-------PQL-KQFLNES----NCALAVSLNATTDEVRNWIMPINRKYK 349 (477)
Q Consensus 282 d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-------p~i-~~L~~~~----d~~LaISL~a~~~e~r~~I~pi~~~~~ 349 (477)
+++.++|+.+.+... ++-|.|.|..+. +.+ +++-++. ++-+ |.++.+.=.- .... .
T Consensus 82 ~~L~~aI~~~~~~~~----P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pv-i~v~tpgf~g-s~~~------G 149 (458)
T 1mio_B 82 SNIKTAVKNIFSLYN----PDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLV-IHTNTPSYVG-SHVT------G 149 (458)
T ss_dssp HHHHHHHHHHHHHTC----CSEEEEEECHHHHHHTCCHHHHHHHHHHTTCSCTTCEE-EEECCCTTSS-CHHH------H
T ss_pred HHHHHHHHHHHHhcC----CCEEEEECCcHHHHHhcCHHHHHHHHHHhcCCCCCCeE-EEEECCCCcc-cHHH------H
Confidence 678888887665542 445777777642 333 3333332 3443 5565543110 1111 2
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 011810 350 LGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLIS 404 (477)
Q Consensus 350 le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLip 404 (477)
++..++++-+++..... +-.-.+.+++|+|. ..|+.++.++++.++..++.+|
T Consensus 150 ~~~a~~al~~~l~~~~~-~~~~~VNilg~~~~-~~d~~eik~lL~~~Gi~v~~l~ 202 (458)
T 1mio_B 150 FANMVQGIVNYLSENTG-AKNGKINVIPGFVG-PADMREIKRLFEAMDIPYIMFP 202 (458)
T ss_dssp HHHHHHHHHHHHCCCCS-CCCSCEEEECCSCC-HHHHHHHHHHHHHHTCCEEESS
T ss_pred HHHHHHHHHHHHccccC-CCCCcEEEECCCCC-HHHHHHHHHHHHHcCCcEEEec
Confidence 45556665543332111 10112346788864 8899999999999999998876
No 25
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=38.95 E-value=87 Score=28.13 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeecCCCCC----CCCCCcHHHHHHHHHHHHhCCCeEEecCCCCC
Q 011810 382 SFDDAKRLIGLVQGIPCKINLISFNPHCGS----QFTPTTDEKMIEFRNILAGAGCTVFLRLSRGD 443 (477)
Q Consensus 382 s~ed~~~La~ll~~l~~~VnLipynp~~~~----~~~~ps~e~l~~f~~~L~~~Gi~v~vR~s~G~ 443 (477)
+++++.+|++.--.+ ..||+-.....++. ..-..++++++.|++... .|+++++|....+
T Consensus 90 ~p~d~~~lve~Gv~i-~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~~-~Gv~v~~q~vP~d 153 (168)
T 3eye_A 90 TPQTVRKLVEGGIDL-KDVNVGNMHFSEGKKQISSKVYVDDQDLTDLRFIKQ-RGVNVFIQDVPGD 153 (168)
T ss_dssp SHHHHHHHHHTTCCC-CEEEECCBCCCTTCEEEETTEEECHHHHHHHHHHHH-TTCEEEECSSTTS
T ss_pred CHHHHHHHHHcCCCC-CEEEECCCcCCCCCEEEeccEeeCHHHHHHHHHHHH-CCCEEEEEECcCC
Confidence 688888886632222 26777665444333 233456899999887765 5999999986654
No 26
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=33.08 E-value=3.8e+02 Score=26.74 Aligned_cols=178 Identities=11% Similarity=0.035 Sum_probs=90.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHh
Q 011810 241 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLN 320 (477)
Q Consensus 241 r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~ 320 (477)
..+++++.++.+....+ .+++.|-+ |-|-..+ ...++++.+. +.++. ..+....-+....+++.++
T Consensus 20 ~~~~~~~k~~ia~~L~~------~Gv~~IE~---g~p~~~~-~~~~~~~~i~-~~~~~---~~v~~~~r~~~~di~~a~~ 85 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDE------FGIEYIEV---TTPVASP-QSRKDAEVLA-SLGLK---AKVVTHIQCRLDAAKVAVE 85 (382)
T ss_dssp CCCCHHHHHHHHHHHHH------HTCSEEEE---CCTTSCH-HHHHHHHHHH-TSCCS---SEEEEEEESCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH------cCcCEEEE---cCCcCCH-HHHHHHHHHH-hcCCC---cEEEEEcccChhhHHHHHH
Confidence 46788888777665433 26776655 3387774 4567777654 33443 2333332344567887777
Q ss_pred cCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeE
Q 011810 321 ESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI 400 (477)
Q Consensus 321 ~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~V 400 (477)
.+-..+.+.+.+. + .+.+-........++.+.+.++. .++.|..+.+++.+....-.+++.+.++++.+.+. +..
T Consensus 86 ~g~~~v~i~~~~s-~-~~~~~~~~s~~e~l~~~~~~v~~--ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~ 160 (382)
T 2ztj_A 86 TGVQGIDLLFGTS-K-YLRAPHGRDIPRIIEEAKEVIAY--IREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDR 160 (382)
T ss_dssp TTCSEEEEEECC----------CCCHHHHHHHHHHHHHH--HHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-CSE
T ss_pred cCCCEEEEEeccC-H-HHHHHhCCCHHHHHHHHHHHHHH--HHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCE
Confidence 7633344544333 2 22221222222224445555563 45667223344444455555678888888888777 532
Q ss_pred EEEeecCCCCCCCCCCcHHHHHHHHHHHHhC---CCe--EEecCCCCC
Q 011810 401 NLISFNPHCGSQFTPTTDEKMIEFRNILAGA---GCT--VFLRLSRGD 443 (477)
Q Consensus 401 nLipynp~~~~~~~~ps~e~l~~f~~~L~~~---Gi~--v~vR~s~G~ 443 (477)
+-+-.+.|. ..++++.++.+.+++. +++ +..-+..|.
T Consensus 161 --i~l~DT~G~----~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~Gl 202 (382)
T 2ztj_A 161 --VGLADTVGV----ATPRQVYALVREVRRVVGPRVDIEFHGHNDTGC 202 (382)
T ss_dssp --EEEEETTSC----CCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSC
T ss_pred --EEecCCCCC----CCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccH
Confidence 222223232 2355555555555543 344 344555555
No 27
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=32.87 E-value=3.1e+02 Score=25.97 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=74.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCcccC-CHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHH-HHHH
Q 011810 241 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPLH-NVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQ-LKQF 318 (477)
Q Consensus 241 r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPLl-n~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~-i~~L 318 (477)
+..+.+++++++....+. +.+-|-+-| |-+.. ..+.+.+.+..+....++ .++|+|. .+. +++-
T Consensus 20 ~~~~~~~a~~~a~~~v~~------GAdiIDIg~-g~~~v~~~ee~~rvv~~i~~~~~~-----pisIDT~--~~~v~~aA 85 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEEG------GARALDLNV-GPAVQDKVSAMEWLVEVTQEVSNL-----TLCLDST--NIKAIEAG 85 (262)
T ss_dssp HHTCHHHHHHHHHHHHHH------TCSEEEEBC-C----CHHHHHHHHHHHHHTTCCS-----EEEEECS--CHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHC------CCcEEEECC-CCCCCChHHHHHHHHHHHHHhCCC-----eEEEeCC--CHHHHHHH
Confidence 456777888877665432 344444533 53333 345566666655433233 5888885 343 3444
Q ss_pred Hhc--CCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCH----HHHHHHHHH
Q 011810 319 LNE--SNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSF----DDAKRLIGL 392 (477)
Q Consensus 319 ~~~--~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~----ed~~~La~l 392 (477)
++. + ..|--|+.+.. + +++++++.+.+ ++..+.+-..--.|.-.+. +.++++.+.
T Consensus 86 l~a~~G-a~iINdvs~~~-d------------~~~~~~~~~a~-----~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~ 146 (262)
T 1f6y_A 86 LKKCKN-RAMINSTNAER-E------------KVEKLFPLAVE-----HGAALIGLTMNKTGIPKDSDTRLAFAMELVAA 146 (262)
T ss_dssp HHHCSS-CEEEEEECSCH-H------------HHHHHHHHHHH-----TTCEEEEESCCSSCSCSSHHHHHHHHHHHHHH
T ss_pred HhhCCC-CCEEEECCCCc-c------------cHHHHHHHHHH-----hCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 444 4 22224555542 1 12345554443 4544432110003332222 334455555
Q ss_pred HhcCCC---eEEEEeec-CCCCCCCCCCcHHHHHHHHHHHHh-C--CCeEEecCC
Q 011810 393 VQGIPC---KINLISFN-PHCGSQFTPTTDEKMIEFRNILAG-A--GCTVFLRLS 440 (477)
Q Consensus 393 l~~l~~---~VnLipyn-p~~~~~~~~ps~e~l~~f~~~L~~-~--Gi~v~vR~s 440 (477)
+...+. +|-+-|.- |.+. .. ....+.++.+ +.+++ . |+++.+..|
T Consensus 147 a~~~Gi~~~~IilDPg~g~~g~-~~-~~~~~~l~~l-~~l~~~~~pg~pvl~G~S 198 (262)
T 1f6y_A 147 ADEFGLPMEDLYIDPLILPANV-AQ-DHAPEVLKTL-QQIKMLADPAPKTVLGLS 198 (262)
T ss_dssp HHHHTCCGGGEEEECCCCCTTT-CT-THHHHHHHHH-HHHHTCCSSCCEEEEEGG
T ss_pred HHHCCCCcccEEEeCCCCcCCC-Ch-HHHHHHHHHH-HHHHHHhCCCCCEEEeec
Confidence 554443 45555521 2211 11 1223444444 44555 5 999988443
No 28
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=32.58 E-value=2.8e+02 Score=26.76 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=39.4
Q ss_pred cCCCHHHHHHHHHHHHHHhcccCCCeeEEEEecCCccc---C-------CHHHHHHHHHHHHHhcCCCCCCCeEEEEcCC
Q 011810 241 RHLTAAEIVEQAVFARRLLSSEVGSITNVVFMGMGEPL---H-------NVENVIKAANIMVHEQGLHFSPRKVTVSTSG 310 (477)
Q Consensus 241 r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~GmGEPL---l-------n~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNG 310 (477)
+..+.+++++++....+. +.+-|-+ | ||.+ . ..+.+..+++.+.+..++ .++|+|.-
T Consensus 33 ~~~~~~~a~~~a~~~v~~------GAdiIDI-G-gestrPga~~v~~~eE~~rv~pvi~~l~~~~~~-----piSIDT~~ 99 (282)
T 1aj0_A 33 THNSLIDAVKHANLMINA------GATIIDV-G-GESTRPGAAEVSVEEELQRVIPVVEAIAQRFEV-----WISVDTSK 99 (282)
T ss_dssp CCTHHHHHHHHHHHHHHH------TCSEEEE-E-SSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCC-----EEEEECCC
T ss_pred ccCCHHHHHHHHHHHHHC------CCCEEEE-C-CCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCC-----eEEEeCCC
Confidence 456788888888765442 4443334 5 5544 1 134567777766655565 48998854
Q ss_pred chHHHHHHHhcC
Q 011810 311 LVPQLKQFLNES 322 (477)
Q Consensus 311 i~p~i~~L~~~~ 322 (477)
.+-+++-++.+
T Consensus 100 -~~va~aAl~aG 110 (282)
T 1aj0_A 100 -PEVIRESAKVG 110 (282)
T ss_dssp -HHHHHHHHHTT
T ss_pred -HHHHHHHHHcC
Confidence 22344445555
No 29
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=29.75 E-value=29 Score=29.22 Aligned_cols=56 Identities=5% Similarity=0.073 Sum_probs=36.7
Q ss_pred eEEEEeecCCCCCCCCCCcHHHHHHHHHHHHhCCC---eEEecCCCCC------ccccccccccc
Q 011810 399 KINLISFNPHCGSQFTPTTDEKMIEFRNILAGAGC---TVFLRLSRGD------DQMAACGQLGN 454 (477)
Q Consensus 399 ~VnLipynp~~~~~~~~ps~e~l~~f~~~L~~~Gi---~v~vR~s~G~------di~aaCGQL~~ 454 (477)
.|.-+|++.+....-+.-+++.++++.+.+++.|+ +++||...|. .+.++|+.|..
T Consensus 13 ~v~~IPi~~I~~p~~~~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~hRl~A 77 (110)
T 1xw3_A 13 AVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAA 77 (110)
T ss_dssp EEEEEEGGGEECCSCCCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHH
T ss_pred eEEEeCHHHccCCCCCccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEEcchHHHHH
Confidence 35456654443211235678999999999999985 5788764322 46678888743
No 30
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=27.28 E-value=4.3e+02 Score=25.52 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-Cc-ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHH
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-GE-PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFL 319 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-GE-PLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~ 319 (477)
.+..+.+...+....+ .+++.|+..|. || |++..++=.++++...+..+= ...+.+-|........+++
T Consensus 29 ~iD~~~l~~lv~~li~------~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~g---rvpViaGvg~~t~~ai~la 99 (316)
T 3e96_A 29 SIDWHHYKETVDRIVD------NGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHG---RALVVAGIGYATSTAIELG 99 (316)
T ss_dssp CBCHHHHHHHHHHHHT------TTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT---SSEEEEEECSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH------cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC---CCcEEEEeCcCHHHHHHHH
Confidence 3565555555544322 47888888775 78 777877666666654443221 1235555533333322222
Q ss_pred ----hcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHH
Q 011810 320 ----NES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLI 390 (477)
Q Consensus 320 ----~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La 390 (477)
+.+ |..+ +-.| .-.+.+-+.+.+..+. +....+.++.+--. |++-+++.+.+|+
T Consensus 100 ~~A~~~Gadavl---v~~P----------~y~~~s~~~l~~~f~~-va~a~~lPiilYn~---g~~l~~~~~~~La 158 (316)
T 3e96_A 100 NAAKAAGADAVM---IHMP----------IHPYVTAGGVYAYFRD-IIEALDFPSLVYFK---DPEISDRVLVDLA 158 (316)
T ss_dssp HHHHHHTCSEEE---ECCC----------CCSCCCHHHHHHHHHH-HHHHHTSCEEEEEC---CTTSCTHHHHHHT
T ss_pred HHHHhcCCCEEE---EcCC----------CCCCCCHHHHHHHHHH-HHHhCCCCEEEEeC---CCCCCHHHHHHHH
Confidence 234 4332 1122 1122345667776666 45556667665332 6666666666555
No 31
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=26.02 E-value=39 Score=25.67 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=39.1
Q ss_pred CCCccccCCCCHHHHHHHHHHCCCCcchHHHHHHHHhcCCCccCCchhh---cCCCHHHHHHHHHH
Q 011810 110 KGSRVLLKGMSFTELQQWVRSHAFRPGQALMLWKRLYGDDIWAHCTDEL---EGLNKDFKKMLSEH 172 (477)
Q Consensus 110 ~~~~~~~~~l~~~el~~~~~~~g~~~~ra~qi~~~l~~~~~~~~~~~~~---~~l~~~~r~~L~~~ 172 (477)
...++++...+.++|.++ -|..+-+|+.|.+|. . ..+++++ ..+++..-+++.+.
T Consensus 15 ~~~~idiN~a~~~~L~~i---pGIG~~~A~~Il~~r--~---~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 15 AQTPVSLNEASLEELMAL---PGIGPVLARRIVEGR--P---YARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp GGCSEETTTCCHHHHTTS---TTCCHHHHHHHHHTC--C---CSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred ccCccChhhCCHHHHHhC---CCCCHHHHHHHHHHc--c---cCCHHHHHhCCCCCHHHHHHHHHh
Confidence 345778888898888774 578889999999986 2 3466655 45677766666543
No 32
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=25.79 E-value=4.8e+02 Score=25.59 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-Cc-ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCc-hHHHHHH
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-GE-PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL-VPQLKQF 318 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-GE-PLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi-~p~i~~L 318 (477)
.+..+.+...+....+ .+++.|+..|. || |++..++-.++++...+..+= ...|.+-|.+. .....++
T Consensus 48 ~ID~~~l~~lv~~li~------~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g---rvpViaGvg~~st~eai~l 118 (343)
T 2v9d_A 48 QLDKPGTAALIDDLIK------AGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDR---RVPVLIGTGGTNARETIEL 118 (343)
T ss_dssp SBCHHHHHHHHHHHHH------TTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT---SSCEEEECCSSCHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH------cCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHH
Confidence 4666656555554432 47888888875 89 778877766777755543221 12355555443 2222222
Q ss_pred ---H-hcC-CeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEEEEE-EEeCCCCCCHHHHHHHH
Q 011810 319 ---L-NES-NCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFKNNYKVLFEY-VMLAGVNDSFDDAKRLI 390 (477)
Q Consensus 319 ---~-~~~-d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~iey-vLI~GvNDs~ed~~~La 390 (477)
+ +.+ |..+.+ .| .-.+.+-+.+.+..+. +.+..+.+|.+-- .-.-|+|-+++.+.+|+
T Consensus 119 a~~A~~~Gadavlv~---~P----------~Y~~~s~~~l~~~f~~-VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 182 (343)
T 2v9d_A 119 SQHAQQAGADGIVVI---NP----------YYWKVSEANLIRYFEQ-VADSVTLPVMLYNFPALTGQDLTPALVKTLA 182 (343)
T ss_dssp HHHHHHHTCSEEEEE---CC----------SSSCCCHHHHHHHHHH-HHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHHHhcCCCEEEEC---CC----------CCCCCCHHHHHHHHHH-HHHhcCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 2 334 443312 12 1112234666666665 4555566665421 11226777777777776
No 33
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=25.32 E-value=50 Score=27.96 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeE-EEEeecCCCCCCCCCCcHHHHHHHHHHHH
Q 011810 351 GLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKI-NLISFNPHCGSQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 351 e~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~V-nLipynp~~~~~~~~ps~e~l~~f~~~L~ 429 (477)
++..+.++. .|..+...-++.-|+.|.+.-+.++.+.|.+.+..| +++.+. ......-.-..+..++..+.|.
T Consensus 56 ~~a~~~L~~-----~G~~v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~ 129 (144)
T 2f06_A 56 DKAYKALKD-----NHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLK 129 (144)
T ss_dssp HHHHHHHHH-----TTCCEEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHH-----cCCeEeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHH
Confidence 444444443 344443322333356688889999999998877777 556652 1111100012246788889999
Q ss_pred hCCCeEE
Q 011810 430 GAGCTVF 436 (477)
Q Consensus 430 ~~Gi~v~ 436 (477)
+.|+.+.
T Consensus 130 ~~g~~v~ 136 (144)
T 2f06_A 130 EKKVDLL 136 (144)
T ss_dssp HTTCEEE
T ss_pred HcCCEEe
Confidence 9999884
No 34
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=24.38 E-value=1.2e+02 Score=31.52 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=54.4
Q ss_pred CcHHHHHHHHHHHHHhhcCCe-EEEEEEEeCCCCCCHHHHHHHHHHHhc-CCCeEEEEeecCCCCCCC-CCCcHHHHHHH
Q 011810 348 YKLGLLIETLREELHFKNNYK-VLFEYVMLAGVNDSFDDAKRLIGLVQG-IPCKINLISFNPHCGSQF-TPTTDEKMIEF 424 (477)
Q Consensus 348 ~~le~ile~l~~~l~~~~~~~-V~ieyvLI~GvNDs~ed~~~La~ll~~-l~~~VnLipynp~~~~~~-~~ps~e~l~~f 424 (477)
..+++.++-.+.| .. |-. |++| ++. .+.++++++++-++. .+ +|++.||..+...| +..++++++.|
T Consensus 268 ~gld~AI~Ra~AY-~~--GAD~if~E----~~~-~~~~ei~~f~~~v~~~~P--~~~La~~~sPsfnw~~~~~d~~~~~f 337 (435)
T 3lg3_A 268 AGIEQAISRGLAY-AP--YADLVWCE----TST-PDLALAKRFADAVHAQFP--GKLLAYNCSPSFNWKKNLTDQQIASF 337 (435)
T ss_dssp CSHHHHHHHHHHH-GG--GCSEEEEC----CSS-CCHHHHHHHHHHHHHHST--TCEEEEECCSSSCHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHH-Hc--cCCEEEec----CCC-CCHHHHHHHHHHhccccC--CeEEEeCCCCCccccccCCHHHHHHH
Confidence 4588999888874 43 444 3333 332 357888888888764 33 56677876654322 24578999999
Q ss_pred HHHHHhCCCeEEe
Q 011810 425 RNILAGAGCTVFL 437 (477)
Q Consensus 425 ~~~L~~~Gi~v~v 437 (477)
.+.|.+.|+...+
T Consensus 338 ~~eLa~lG~~~v~ 350 (435)
T 3lg3_A 338 QDELSAMGYKYQF 350 (435)
T ss_dssp HHHHHHTTEEEEE
T ss_pred HHHHHHcCCcEEE
Confidence 9999999997544
No 35
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=23.81 E-value=5.3e+02 Score=25.36 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-Cc-ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCc-hHHHHHH
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-GE-PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGL-VPQLKQF 318 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-GE-PLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi-~p~i~~L 318 (477)
.+..+.+...+....+ .+++.|+..|. || |++..++-.++++. .-...+ .|.+-+.+. .....++
T Consensus 43 ~ID~~~l~~lv~~li~------~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~-~~~grv-----pViaGvg~~st~eai~l 110 (344)
T 2hmc_A 43 TPDFDALVRKGKELIA------DGMSAVVYCGSMGDWPLLTDEQRMEGVER-LVKAGI-----PVIVGTGAVNTASAVAH 110 (344)
T ss_dssp SBCHHHHHHHHHHHHH------TTCCCEEESSGGGTGGGSCHHHHHHHHHH-HHHTTC-----CEEEECCCSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH------cCCCEEEeCccCcChhhCCHHHHHHHHHH-HhCCCC-----cEEEecCCCCHHHHHHH
Confidence 4566656555554432 47888888775 88 78887776777775 222223 355555543 2322222
Q ss_pred ---H-hcC-CeEEEEeeCCCCHHHHhhHcCCCCC-CcHHHHHHHHHHHHHh-hcCCeEEE-EEEEeCCCCCCHHHHHHH-
Q 011810 319 ---L-NES-NCALAVSLNATTDEVRNWIMPINRK-YKLGLLIETLREELHF-KNNYKVLF-EYVMLAGVNDSFDDAKRL- 389 (477)
Q Consensus 319 ---~-~~~-d~~LaISL~a~~~e~r~~I~pi~~~-~~le~ile~l~~~l~~-~~~~~V~i-eyvLI~GvNDs~ed~~~L- 389 (477)
+ +.+ |..+ +-.| .-.+ .+-+.+.+..+. +.. ..+.+|.+ ++. .-|+|-+++.+.+|
T Consensus 111 a~~A~~~Gadavl---v~~P----------~y~~~~s~~~l~~~f~~-IA~aa~~lPiilYn~P-~tg~~l~~e~~~~L~ 175 (344)
T 2hmc_A 111 AVHAQKVGAKGLM---VIPR----------VLSRGSVIAAQKAHFKA-ILSAAPEIPAVIYNSP-YYGFATRADLFFALR 175 (344)
T ss_dssp HHHHHHHTCSEEE---ECCC----------CSSSTTCHHHHHHHHHH-HHHHSTTSCEEEEEBG-GGTBCCCHHHHHHHH
T ss_pred HHHHHhcCCCEEE---ECCC----------ccCCCCCHHHHHHHHHH-HHhhCCCCcEEEEecC-ccCCCcCHHHHHHHH
Confidence 2 234 4332 2222 1112 244677777776 455 56677654 444 44888888888887
Q ss_pred HH
Q 011810 390 IG 391 (477)
Q Consensus 390 a~ 391 (477)
++
T Consensus 176 a~ 177 (344)
T 2hmc_A 176 AE 177 (344)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 36
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=22.30 E-value=4.7e+02 Score=24.17 Aligned_cols=135 Identities=15% Similarity=0.240 Sum_probs=70.1
Q ss_pred EEEEecCCc--ccCCH-HHHHHHHHHHHHhcCCCCCCCeEEEEcCCchHHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCC
Q 011810 268 NVVFMGMGE--PLHNV-ENVIKAANIMVHEQGLHFSPRKVTVSTSGLVPQLKQFLNESNCALAVSLNATTDEVRNWIMPI 344 (477)
Q Consensus 268 nIvF~GmGE--PLln~-d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi 344 (477)
+|-+|- |- |-+.+ ..+++.++... ..-+ .+.+=++--...++.+.+.+-..+.+...++.+
T Consensus 30 HvDvmD-G~fvpn~t~G~~~v~~lr~~~-~~~~-----dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~~--------- 93 (231)
T 3ctl_A 30 HIDIMD-GHFVPNLTLSPFFVSQVKKLA-TKPL-----DCHLMVTRPQDYIAQLARAGADFITLHPETING--------- 93 (231)
T ss_dssp EEEEEC-SSSSSCCCBCHHHHHHHHTTC-CSCE-----EEEEESSCGGGTHHHHHHHTCSEEEECGGGCTT---------
T ss_pred EEEEEe-CccCccchhcHHHHHHHHhcc-CCcE-----EEEEEecCHHHHHHHHHHcCCCEEEECcccCCc---------
Confidence 566776 77 64432 13445554322 1112 244444421224666677663333233322100
Q ss_pred CCCCcHHHHHHHHHHHHHhhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCeEEEEeecCCC-CCCCCCCcHHHHHH
Q 011810 345 NRKYKLGLLIETLREELHFKNNYKVLFEYVMLAGVNDSFDDAKRLIGLVQGIPCKINLISFNPHC-GSQFTPTTDEKMIE 423 (477)
Q Consensus 345 ~~~~~le~ile~l~~~l~~~~~~~V~ieyvLI~GvNDs~ed~~~La~ll~~l~~~VnLipynp~~-~~~~~~ps~e~l~~ 423 (477)
++.++++.++ +.|.++.+. +-|+ ...+.++ .++.... .|-++.+||.. +..|.+...+.+++
T Consensus 94 ----~~~~~i~~i~-----~~G~k~gv~--lnp~--tp~~~~~---~~l~~~D-~VlvmsV~pGfggQ~f~~~~l~kI~~ 156 (231)
T 3ctl_A 94 ----QAFRLIDEIR-----RHDMKVGLI--LNPE--TPVEAMK---YYIHKAD-KITVMTVDPGFAGQPFIPEMLDKLAE 156 (231)
T ss_dssp ----THHHHHHHHH-----HTTCEEEEE--ECTT--CCGGGGT---TTGGGCS-EEEEESSCTTCSSCCCCTTHHHHHHH
T ss_pred ----cHHHHHHHHH-----HcCCeEEEE--EECC--CcHHHHH---HHHhcCC-EEEEeeeccCcCCccccHHHHHHHHH
Confidence 2345555555 457666553 3343 3333333 3333332 67778899964 44688888899999
Q ss_pred HHHHHHhCCCeE
Q 011810 424 FRNILAGAGCTV 435 (477)
Q Consensus 424 f~~~L~~~Gi~v 435 (477)
+++...+.|+.+
T Consensus 157 lr~~~~~~~~~~ 168 (231)
T 3ctl_A 157 LKAWREREGLEY 168 (231)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHhccCCCc
Confidence 999987765443
No 37
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=21.86 E-value=1.8e+02 Score=29.16 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=59.0
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCe-EEEEeecCCC-CCCCCCCcHHHHHHHHHHHHhCCCeE--EecCCCCCccc---cc
Q 011810 376 LAGVNDSFDDAKRLIGLVQGIPCK-INLISFNPHC-GSQFTPTTDEKMIEFRNILAGAGCTV--FLRLSRGDDQM---AA 448 (477)
Q Consensus 376 I~GvNDs~ed~~~La~ll~~l~~~-VnLipynp~~-~~~~~~ps~e~l~~f~~~L~~~Gi~v--~vR~s~G~di~---aa 448 (477)
=++.+++.+.+.++++.++..+.. +.+..|.|-. ...|+.+..+.++.+++..++.|+++ ++-....-+.. ..
T Consensus 112 gpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~vd 191 (350)
T 1vr6_A 112 GPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYAD 191 (350)
T ss_dssp ECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHHCS
T ss_pred eCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC
Confidence 367899999999999999988764 3334455532 22466677899999999999999986 34443333322 45
Q ss_pred ccccccCCCCCCCccC
Q 011810 449 CGQLGNPGAIQAPLLR 464 (477)
Q Consensus 449 CGQL~~~~~~~~~~~~ 464 (477)
..|.....-+..|+|+
T Consensus 192 ~lkIgAr~~~n~~LL~ 207 (350)
T 1vr6_A 192 IIQIGARNAQNFRLLS 207 (350)
T ss_dssp EEEECGGGTTCHHHHH
T ss_pred EEEECcccccCHHHHH
Confidence 5565555444444444
No 38
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=21.64 E-value=5.8e+02 Score=24.98 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEec--CCcccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCch-H-----
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMG--MGEPLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSGLV-P----- 313 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~G--mGEPLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNGi~-p----- 313 (477)
.+|++||+++.....+- +..+-++..=. -|.|...++...+++..+.+..++ -|.++|-|.. .
T Consensus 28 PvTpeEia~~A~~~~~A----GAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d~-----iI~~TTgg~~~~~~~~e 98 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEA----GAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSDV-----VINVTTGGGGTLGIPVE 98 (314)
T ss_dssp CCSHHHHHHHHHHHHHH----TCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCC-----EEEECSSTTGGGTCCHH
T ss_pred CCCHHHHHHHHHHHHHc----CCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCCe-----EEEeCCCCcCCCCCCHH
Confidence 58999999999877542 23444555544 388999987777777777655454 2788887642 1
Q ss_pred -HHHHHHhcCCeEEEEeeCCCCH----------------H-H-----HhhHcCCCCCCcHHHHHHHHHHHHHhhcCCeEE
Q 011810 314 -QLKQFLNESNCALAVSLNATTD----------------E-V-----RNWIMPINRKYKLGLLIETLREELHFKNNYKVL 370 (477)
Q Consensus 314 -~i~~L~~~~d~~LaISL~a~~~----------------e-~-----r~~I~pi~~~~~le~ile~l~~~l~~~~~~~V~ 370 (477)
.+.-+.+..+....+++-+.|= + . .+.+.. .+.+.+.+.++. ..+.|.+..
T Consensus 99 eR~~~~~~~~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~----N~~~~i~~~~~~--~~e~Gi~pE 172 (314)
T 3lot_A 99 ERAKVVPALKPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFR----NTFKDLEALSRI--FKENDTKPE 172 (314)
T ss_dssp HHTTHHHHHCCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEEC----CCHHHHHHHHHH--HHHHTCEEE
T ss_pred HHHHHHHhcCCceeeecCCCcccccccccccccccccccchhhcccCCCceec----CCHHHHHHHHHH--HHHcCCEEE
Confidence 1222222222221233322210 0 0 011111 245666666665 356677776
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhc-C-C--CeEEEEeecCCCCCCCCCCcHHHHHHHHHHHH
Q 011810 371 FEYVMLAGVNDSFDDAKRLIGLVQG-I-P--CKINLISFNPHCGSQFTPTTDEKMIEFRNILA 429 (477)
Q Consensus 371 ieyvLI~GvNDs~ed~~~La~ll~~-l-~--~~VnLipynp~~~~~~~~ps~e~l~~f~~~L~ 429 (477)
++.- +..++..+..+++. + + ..+++.- -..+ -.+++++.+..+.+.+.
T Consensus 173 ~e~f-------d~g~l~~~~~l~~~Gll~~p~~~~~Vl--Gv~~--G~~~~p~~L~~~~~~~~ 224 (314)
T 3lot_A 173 LECY-------DIGQIYNTAFMFHEGYLEPPLRLQFIH--GILG--GIGTAVEDVLFMKQTAD 224 (314)
T ss_dssp EEEC-------SHHHHHHHHHHHHTTCSCSSEEEEEEE--CCBT--SCCCCHHHHHHHHHHHH
T ss_pred EEEE-------CHHHHHHHHHHHHCCCCCCCceEEEEe--cCCC--CCCCCHHHHHHHHHHhh
Confidence 6642 46788888888863 3 2 2454432 1111 13667888888876654
No 39
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=21.50 E-value=5.3e+02 Score=24.53 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHHhcccCCCeeEEEEecC-Cc-ccCCHHHHHHHHHHHHHhcCCCCCCCeEEEEcCC--chHHH--
Q 011810 242 HLTAAEIVEQAVFARRLLSSEVGSITNVVFMGM-GE-PLHNVENVIKAANIMVHEQGLHFSPRKVTVSTSG--LVPQL-- 315 (477)
Q Consensus 242 ~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~Gm-GE-PLln~d~vi~~i~~l~~~~Gl~i~~r~ItvsTNG--i~p~i-- 315 (477)
.+..+.+...+....+ .+++.|+..|. || |++..++-.+.++...+..+ +...+.+-|.+ +.+.+
T Consensus 20 ~iD~~~l~~lv~~li~------~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---gr~pviaGvg~~~t~~ai~l 90 (294)
T 3b4u_A 20 TVDIDAMIAHARRCLS------NGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGI---APSRIVTGVLVDSIEDAADQ 90 (294)
T ss_dssp SBCHHHHHHHHHHHHH------TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTC---CGGGEEEEECCSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH------cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEeCCCccHHHHHHH
Confidence 4566656555554432 47899988885 89 78888777777775554322 11235454544 33322
Q ss_pred HHHHh-cC-CeEEEEeeCCCCHHHHhhHcCCCCC-CcHHHHHHHHHHHHHhhc---CCeEEEE-EEEeCCCCCCHHHHHH
Q 011810 316 KQFLN-ES-NCALAVSLNATTDEVRNWIMPINRK-YKLGLLIETLREELHFKN---NYKVLFE-YVMLAGVNDSFDDAKR 388 (477)
Q Consensus 316 ~~L~~-~~-d~~LaISL~a~~~e~r~~I~pi~~~-~~le~ile~l~~~l~~~~---~~~V~ie-yvLI~GvNDs~ed~~~ 388 (477)
.+.++ .+ |..+ +-.| .-.+ .+-+.+.+..+. +.... +.++.+- +.-.-|+|-+++.+.+
T Consensus 91 a~~A~~~Gadavl---v~~P----------~y~~~~s~~~l~~~f~~-va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~ 156 (294)
T 3b4u_A 91 SAEALNAGARNIL---LAPP----------SYFKNVSDDGLFAWFSA-VFSKIGKDARDILVYNIPSVTMVTLSVELVGR 156 (294)
T ss_dssp HHHHHHTTCSEEE---ECCC----------CSSCSCCHHHHHHHHHH-HHHHHCTTCCCEEEEECHHHHSCCCCHHHHHH
T ss_pred HHHHHhcCCCEEE---EcCC----------cCCCCCCHHHHHHHHHH-HHHhcCCCCCcEEEEECcchhCcCCCHHHHHH
Confidence 22233 34 4332 2222 1111 234667777666 45555 6676542 2222378888888887
Q ss_pred HH
Q 011810 389 LI 390 (477)
Q Consensus 389 La 390 (477)
|+
T Consensus 157 La 158 (294)
T 3b4u_A 157 LK 158 (294)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 40
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=21.12 E-value=5e+02 Score=26.67 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=77.2
Q ss_pred CcCCCHHHHHHHHHHHHHHhcccCCCeeEEEEe------cCCcccCC----HHHHHHHHHHHHHhcCCCCCCCeEEEEcC
Q 011810 240 KRHLTAAEIVEQAVFARRLLSSEVGSITNVVFM------GMGEPLHN----VENVIKAANIMVHEQGLHFSPRKVTVSTS 309 (477)
Q Consensus 240 ~r~Lt~eEIv~qv~~~~~~~~~~~~~v~nIvF~------GmGEPLln----~d~vi~~i~~l~~~~Gl~i~~r~ItvsTN 309 (477)
++..+++|.++.+..+.++.. +-..|.+- | ||+... ++.+.+..+ ..++.|+. +.+.+|
T Consensus 71 G~ar~~~E~~~D~~~~~~l~~----~~~~v~LH~~y~~~~-~~~v~~d~~~p~~f~~~~~-~a~e~GL~-----l~~n~n 139 (424)
T 3p14_A 71 GKATTPEELRMDLEKALSLIP----GKHRVNLHAIYAETD-GKVVERDQLEPRHFEKWVR-WAKRHGLG-----LDFNPT 139 (424)
T ss_dssp CCCCSHHHHHHHHHHHHTTSS----SCCEEEEEGGGCCCT-TCCCCGGGCCGGGGHHHHH-HHHHHTCE-----EEEECC
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCcceecchhhhccC-CCcCCccccChhhHHHHHH-HHHHcCCc-----eeeccC
Confidence 345689999999998876542 33345555 4 554432 233333333 45678986 668888
Q ss_pred Cch-HHHHHHHhcCCeEEEEeeCCCCHHHHhhHcCCCCCCcHHHHHHHHHHHHHhh----cCCeEEEEEEEeCCCC----
Q 011810 310 GLV-PQLKQFLNESNCALAVSLNATTDEVRNWIMPINRKYKLGLLIETLREELHFK----NNYKVLFEYVMLAGVN---- 380 (477)
Q Consensus 310 Gi~-p~i~~L~~~~d~~LaISL~a~~~e~r~~I~pi~~~~~le~ile~l~~~l~~~----~~~~V~ieyvLI~GvN---- 380 (477)
-+. |..+ . .+++-+||+++|+.- ++.++++++. ... .|.+..+..-+-.|.+
T Consensus 140 ~Fshp~yk----~-----G~alTnPD~~VR~~A--------I~h~k~~idi--a~~~G~~LGs~~~~~lW~~DG~kdyp~ 200 (424)
T 3p14_A 140 LFSHEKAK----D-----GLTLAHPDQAIRQFW--------IDHCIASRKI--GEYFGKELETPCLTNIWIPDGYKDTPS 200 (424)
T ss_dssp CSSSGGGT----T-----SCSTTCSSHHHHHHH--------HHHHHHHHHH--HHHHHHHHSSCEEEEECCCCEESSCCS
T ss_pred CCCChhhc----C-----CccCCCCCHHHHHHH--------HHHHHHHHHH--HHHHHHhcCCCeeEEEeCCCCCcCCCC
Confidence 764 4211 1 258889999998743 5667777763 444 4555333222335777
Q ss_pred CCHHHHHHHHHHHhcC
Q 011810 381 DSFDDAKRLIGLVQGI 396 (477)
Q Consensus 381 Ds~ed~~~La~ll~~l 396 (477)
|-....+.+.+.+..+
T Consensus 201 D~~~~~~rl~esL~eI 216 (424)
T 3p14_A 201 DRLTPRKRLKESLDQI 216 (424)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7777777888777643
No 41
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.40 E-value=1e+02 Score=25.28 Aligned_cols=21 Identities=5% Similarity=0.180 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHhcCCCeEE
Q 011810 381 DSFDDAKRLIGLVQGIPCKIN 401 (477)
Q Consensus 381 Ds~ed~~~La~ll~~l~~~Vn 401 (477)
.+++.++.+.+.+++-+.+|.
T Consensus 10 tdeetlrkfkdiikkngfkvr 30 (134)
T 2l69_A 10 TDEETLRKFKDIIKKNGFKVR 30 (134)
T ss_dssp CCHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHhcCceEE
Confidence 456666666666665555554
Done!