BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011811
(477 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6F813|MACB_ACIAD Macrolide export ATP-binding/permease protein MacB OS=Acinetobacter
sp. (strain ADP1) GN=macB PE=3 SV=1
Length = 664
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 18/161 (11%)
Query: 106 VPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLM 165
+P + + DP +A AI+ G +VS L M +I + + + M
Sbjct: 231 IPEYASELNKDPDAAPAIANKQSKGKSVSAFRSMLDRLSEAFQMALISMNAHRMRTFLTM 290
Query: 166 LGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKRETILKKEAARCLGSNGA 225
LGI IG+A +V+ +V S K L+ + + TI + R G N
Sbjct: 291 LGIIIGIA----------SVVTVVALGNGSQKQILENISSLGTNTITVFQ-GRGFGDNSK 339
Query: 226 GAGEVEYKSL-PSGP---RSGPQKDAMEPEVTILENINWKE 262
A +K+L PS S P A+ P V+ + I +KE
Sbjct: 340 TAN---FKTLVPSDADALSSQPYVTAVSPMVSSSKTIRYKE 377
>sp|O34430|YTNM_BACSU UPF0721 transmembrane protein YtnM OS=Bacillus subtilis (strain
168) GN=ytnM PE=3 SV=1
Length = 300
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%)
Query: 333 QLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEY 392
+L+ + G+L+ ++ G LG+ G L L G+ P V+SA+ A +++ S V +
Sbjct: 3 KLIVFAFIGLLSQLIDGSLGMAYGVTSTSLLLAFGITPAVASASVHLAEVVTTAASGVSH 62
Query: 393 YLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424
V +I AF+G + +L
Sbjct: 63 IKFGNVDKQTVYQLVIPGSIGAFLGAAFLSQL 94
>sp|Q57883|Y441_METJA UPF0721 transmembrane protein MJ0441 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0441 PE=3 SV=1
Length = 267
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 341 GVLAGIVGGLLGLGGGFIMGP----LFLELGVPPQVSSA--TATFAMTFSSSMSVVEYYL 394
G + GI+G L G+GGGF++ P +F G+P V A T+ F + +S +S+ +
Sbjct: 20 GFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRHAK 79
Query: 395 LKR 397
+K
Sbjct: 80 IKN 82
>sp|P42726|TFXD_RHILT Trifolitoxin-processing protein TfxD OS=Rhizobium leguminosarum bv.
trifolii GN=tfxD PE=4 SV=1
Length = 416
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 321 SKGDDGKSFRVFQLVSYCAFGV---LAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATA 377
+K D GK ++Y A GV LA ++G + L ++GPLFL + + P V S TA
Sbjct: 352 AKADGGK-LTHLSAIAYLASGVILALAAVLGSVQALAIALVLGPLFLAISI-PAVQSRTA 409
Query: 378 TFAM 381
A+
Sbjct: 410 LNAL 413
>sp|P29837|POLG_LANVT Genome polyprotein OS=Langat virus (strain TP21) PE=1 SV=2
Length = 3414
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 30/131 (22%)
Query: 56 VNFLWQPEGSGYHHVWPELKFGWEIVLGTIIGFFGAAFGSVGGVGG----------GGIF 105
+N W +GS V + + G E + T++G FGSVGGV GG F
Sbjct: 668 LNHQWFQKGSSIGRVLQKTRKGIERL--TVLGEHAWDFGSVGGVMTSIGRAMHTVLGGAF 725
Query: 106 VPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLM 165
+L +GF PK +++G A++ + L +R+PTL M L+ L+
Sbjct: 726 NTLLG-GVGFLPK--------ILLGVAMA--WLGLNMRNPTLSM-------GFLLSGGLV 767
Query: 166 LGISIGVAFNV 176
L +++GV +V
Sbjct: 768 LAMTLGVGADV 778
>sp|P54437|YRKJ_BACSU UPF0721 transmembrane protein YrkJ OS=Bacillus subtilis (strain
168) GN=yrkJ PE=3 SV=1
Length = 261
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 319 IASKGDDGKSFR-----VFQ--LVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLE-LGVPP 370
I KG G+ +F L S AF + G V G+LG GG FI+ P+ L L +P
Sbjct: 125 IPKKGQKGQEHSEDKEVIFNKWLASSLAF--IIGGVSGILGAGGAFILVPIMLSILNIPV 182
Query: 371 QVSSATATFAMTFSSSM--SVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424
+V+ A+ + A+TF SS+ +V + + VP AL + + IA+ +G V +K+
Sbjct: 183 RVTVAS-SLAITFLSSIGATVGKVITGQVLFVP-ALVLMITSLIASPIGASVGQKV 236
>sp|E3Q4R4|M28P1_COLGM Probable zinc metalloprotease GLRG_01223 OS=Colletotrichum
graminicola (strain M1.001 / M2 / FGSC 10212)
GN=GLRG_01223 PE=3 SV=1
Length = 1034
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 15/80 (18%)
Query: 379 FAMTFSSSMSVVEYYLLKR------FPVPYA-------LYFVAVATIAAFVGQHVVRKLI 425
FA+ S+S++V+ +L++R + PYA L+F+ TIA G VVR
Sbjct: 475 FALVLSASITVLSAFLIRRVNPHIIYSSPYAVWAMTLSLFFLVFWTIAK--GASVVRPSA 532
Query: 426 ILLGRASLIIFILAFMIFVS 445
+ G A + +F+++++I V+
Sbjct: 533 LQRGYAHIWLFVISWVILVA 552
>sp|P53125|ITC1_YEAST Imitation switch two complex protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ITC1 PE=1 SV=1
Length = 1264
Score = 32.3 bits (72), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 194 TSTKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVT 253
T+T+ + W+R + ++ + + +VEYK + P S
Sbjct: 497 TTTEEDSENPSDWQRNSFIRDMIMK------RNSDKVEYKIVHDDPASD----------D 540
Query: 254 ILENINWKELGLLVFVWVAFLGLQIAKNHTASCSIVY-WVLD 294
IL+NIN LL+ V+ A L L I + SC +V W++D
Sbjct: 541 ILDNINHNGSALLIEVFTALLRLFINEEGDWSCIVVENWIID 582
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.143 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,880,318
Number of Sequences: 539616
Number of extensions: 7417059
Number of successful extensions: 27178
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 27139
Number of HSP's gapped (non-prelim): 59
length of query: 477
length of database: 191,569,459
effective HSP length: 121
effective length of query: 356
effective length of database: 126,275,923
effective search space: 44954228588
effective search space used: 44954228588
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)