Query 011811
Match_columns 477
No_of_seqs 204 out of 1924
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10621 hypothetical protein; 100.0 1.1E-26 2.5E-31 230.9 30.0 233 78-437 10-243 (266)
2 COG0730 Predicted permeases [G 100.0 5.2E-26 1.1E-30 224.8 28.7 236 79-437 6-243 (258)
3 PF01925 TauE: Sulfite exporte 99.9 1.1E-25 2.5E-30 218.9 22.3 227 84-437 2-233 (240)
4 PRK10621 hypothetical protein; 99.3 1.3E-10 2.9E-15 115.7 16.1 103 334-437 12-114 (266)
5 COG0730 Predicted permeases [G 99.2 2.1E-10 4.5E-15 113.5 15.7 105 333-437 6-110 (258)
6 PF01925 TauE: Sulfite exporte 99.0 4.5E-09 9.8E-14 102.2 12.9 108 79-197 128-239 (240)
7 PF04018 DUF368: Domain of unk 96.2 1.5 3.3E-05 43.8 23.8 93 333-447 141-233 (257)
8 PF02673 BacA: Bacitracin resi 88.9 27 0.00059 34.9 21.4 89 349-437 158-252 (259)
9 KOG2533 Permease of the major 79.1 49 0.0011 36.3 14.6 31 259-289 265-295 (495)
10 KOG2881 Predicted membrane pro 77.1 13 0.00028 37.2 8.4 55 155-209 104-158 (294)
11 PRK00281 undecaprenyl pyrophos 71.1 1.2E+02 0.0026 30.5 22.7 91 102-196 28-127 (268)
12 COG1968 BacA Undecaprenyl pyro 65.3 1.6E+02 0.0035 29.8 22.3 65 120-184 43-114 (270)
13 TIGR02840 spore_YtaF putative 49.7 2.4E+02 0.0053 27.0 19.7 47 157-203 37-83 (206)
14 COG2119 Predicted membrane pro 49.4 58 0.0013 31.0 6.7 51 152-202 135-185 (190)
15 PRK09412 anaerobic C4-dicarbox 49.3 2.6E+02 0.0055 30.1 12.6 24 444-467 388-411 (433)
16 PF09605 Trep_Strep: Hypotheti 48.9 2.4E+02 0.0051 26.6 12.1 33 398-430 153-185 (186)
17 PF11368 DUF3169: Protein of u 44.5 3.2E+02 0.0069 26.8 16.6 26 153-178 8-33 (248)
18 PF01169 UPF0016: Uncharacteri 41.8 71 0.0015 25.9 5.4 43 152-194 35-77 (78)
19 COG3619 Predicted membrane pro 41.6 3.5E+02 0.0077 26.6 13.5 36 150-185 167-202 (226)
20 PF07172 GRP: Glycine rich pro 39.8 48 0.001 28.1 4.2 16 18-33 13-28 (95)
21 PRK04288 antiholin-like protei 39.1 3.9E+02 0.0085 26.4 13.6 88 335-431 93-183 (232)
22 COG3180 AbrB Putative ammonia 38.2 3.1E+02 0.0067 28.8 10.6 99 331-451 8-106 (352)
23 PF05232 BTP: Bacterial Transm 37.6 70 0.0015 25.2 4.6 39 103-141 19-57 (67)
24 PF04018 DUF368: Domain of unk 36.8 3.1E+02 0.0067 27.5 10.1 49 396-446 50-98 (257)
25 PF04066 MrpF_PhaF: Multiple r 36.1 1.8E+02 0.004 21.7 6.6 53 370-422 2-54 (55)
26 TIGR02230 ATPase_gene1 F0F1-AT 36.1 92 0.002 26.7 5.4 21 406-426 52-72 (100)
27 PTZ00370 STEVOR; Provisional 35.8 2.5E+02 0.0053 28.7 9.1 16 165-180 242-257 (296)
28 TIGR01112 mtrD N5-methyltetrah 35.2 47 0.001 31.8 3.7 20 97-118 148-167 (223)
29 PRK11588 hypothetical protein; 33.7 6.9E+02 0.015 27.6 13.2 26 104-129 173-201 (506)
30 PRK10263 DNA translocase FtsK; 33.5 5.2E+02 0.011 32.0 12.7 21 406-426 140-160 (1355)
31 PRK10711 hypothetical protein; 33.4 4.8E+02 0.01 25.7 13.5 121 282-431 55-178 (231)
32 TIGR02185 Trep_Strep conserved 32.8 4.3E+02 0.0093 25.0 10.4 32 399-430 157-188 (189)
33 COG0670 Integral membrane prot 32.7 4.9E+02 0.011 25.6 12.2 82 102-193 98-181 (233)
34 PF09835 DUF2062: Uncharacteri 31.2 3.9E+02 0.0084 24.0 13.9 47 79-128 21-67 (154)
35 PF01169 UPF0016: Uncharacteri 31.1 1.5E+02 0.0032 24.0 5.6 32 403-434 40-71 (78)
36 PF11833 DUF3353: Protein of u 30.9 4.8E+02 0.01 24.9 13.4 28 152-179 138-165 (194)
37 PF02652 Lactate_perm: L-lacta 30.0 3.8E+02 0.0082 29.7 10.3 49 79-128 100-149 (522)
38 PRK11469 hypothetical protein; 29.6 4.9E+02 0.011 24.6 21.9 44 159-203 46-89 (188)
39 PF05884 ZYG-11_interact: Inte 29.1 5.7E+02 0.012 26.2 10.5 88 75-181 105-193 (299)
40 COG2119 Predicted membrane pro 28.9 5.2E+02 0.011 24.7 16.9 50 152-201 36-85 (190)
41 COG2807 CynX Cyanate permease 28.5 6.4E+02 0.014 26.9 11.1 49 349-397 304-355 (395)
42 PF11169 DUF2956: Protein of u 28.3 1.8E+02 0.0039 25.1 5.7 16 199-214 32-47 (103)
43 PF03606 DcuC: C4-dicarboxylat 28.0 2.9E+02 0.0063 29.9 9.0 24 102-126 143-166 (465)
44 COG1971 Predicted membrane pro 27.5 5.5E+02 0.012 24.6 15.9 45 158-203 45-89 (190)
45 COG2035 Predicted membrane pro 27.2 6.7E+02 0.015 25.4 27.2 74 85-181 9-82 (276)
46 PRK01844 hypothetical protein; 27.1 1.6E+02 0.0034 23.8 4.9 28 404-431 8-35 (72)
47 TIGR03727 urea_t_UrtC_arc urea 26.8 7.5E+02 0.016 25.9 13.1 72 107-180 224-303 (364)
48 PRK00968 tetrahydromethanopter 25.9 73 0.0016 31.0 3.4 15 97-111 152-166 (240)
49 PF11085 YqhR: Conserved membr 24.9 5.9E+02 0.013 24.0 11.4 106 336-441 22-146 (173)
50 COG4139 BtuC ABC-type cobalami 24.9 7E+02 0.015 24.8 12.0 70 102-181 98-169 (326)
51 PF04279 IspA: Intracellular s 24.4 5.9E+02 0.013 23.8 14.5 53 259-314 115-171 (176)
52 TIGR00795 lctP L-lactate trans 24.3 8.5E+02 0.018 27.0 11.8 50 79-129 106-156 (530)
53 COG3416 Uncharacterized protei 24.2 53 0.0012 31.8 2.1 27 87-113 137-163 (233)
54 TIGR00822 EII-Sor PTS system, 24.1 7.5E+02 0.016 24.9 10.4 131 101-234 77-265 (265)
55 TIGR00659 conserved hypothetic 23.6 7.1E+02 0.015 24.5 19.2 65 358-424 103-168 (226)
56 PF04207 MtrD: Tetrahydrometha 23.5 97 0.0021 29.9 3.7 17 96-112 147-163 (223)
57 PRK09695 glycolate transporter 23.0 5.7E+02 0.012 28.6 10.2 51 79-129 115-165 (560)
58 PRK00523 hypothetical protein; 23.0 2E+02 0.0044 23.1 4.9 27 404-430 9-35 (72)
59 PF10399 UCR_Fe-S_N: Ubiquitin 22.7 36 0.00077 24.3 0.5 18 94-111 20-37 (41)
60 PF11044 TMEMspv1-c74-12: Plec 22.5 73 0.0016 23.2 2.0 28 291-318 4-31 (49)
61 PRK10263 DNA translocase FtsK; 22.0 6.6E+02 0.014 31.1 10.9 22 160-181 140-161 (1355)
62 PF03616 Glt_symporter: Sodium 21.8 9.4E+02 0.02 25.2 12.8 183 113-423 1-185 (368)
63 TIGR00892 2A0113 monocarboxyla 21.8 9.4E+02 0.02 25.3 11.4 17 162-178 380-396 (455)
64 TIGR02230 ATPase_gene1 F0F1-AT 21.3 2.9E+02 0.0064 23.6 5.9 25 156-180 48-72 (100)
65 PF02535 Zip: ZIP Zinc transpo 20.4 8.4E+02 0.018 24.1 20.5 25 156-180 36-60 (317)
66 COG5547 Small integral membran 20.2 4.2E+02 0.0091 20.5 5.8 32 166-197 12-44 (62)
No 1
>PRK10621 hypothetical protein; Provisional
Probab=99.96 E-value=1.1e-26 Score=230.88 Aligned_cols=233 Identities=19% Similarity=0.214 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccchhchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHH
Q 011811 78 WEIVLGTIIGFFGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLA 157 (477)
Q Consensus 78 ~~ili~~iiG~lag~i~~v~GiGGG~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~ 157 (477)
+..++.+++|+++|++++..| |||.+.+|+|.. +|+||++|+++|.+.++.+++++.+.|.|++| +||+..
T Consensus 10 ~~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~-------v~~~~~ 80 (266)
T PRK10621 10 LLLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIRRKV-------VNLADQ 80 (266)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCHHHH
Confidence 345667778888899999999 999999999974 79999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhHHHHhhhhCCCCCCCCccccccCCC
Q 011811 158 LLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPS 237 (477)
Q Consensus 158 l~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~kg~~~~kke~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (477)
..+.+++++|+.+|+++..++|++.++.+++++++..+.+++++. +++ +++ +
T Consensus 81 ~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~~----~~~---~~~-----------------~---- 132 (266)
T PRK10621 81 KLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLMP----KLG---EED-----------------R---- 132 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC----ccc---ccc-----------------c----
Confidence 999999999999999999999999999999999888877655331 000 000 0
Q ss_pred CCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHhhhhhHHHHHHHHHHHHhhhccc
Q 011811 238 GPRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLGLQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRR 317 (477)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~v~~~~~~~~~~k~~~~~cs~~yw~~~~~~~pv~~~v~~~~~~~~~~~~~ 317 (477)
++ +++
T Consensus 133 -----------~~--------~~~-------------------------------------------------------- 137 (266)
T PRK10621 133 -----------QR--------RLY-------------------------------------------------------- 137 (266)
T ss_pred -----------cc--------ccc--------------------------------------------------------
Confidence 00 000
Q ss_pred ccccCCCCCCchhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 011811 318 VIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGGGFIMGPLF-LELGVPPQVSSATATFAMTFSSSMSVVEYYLLK 396 (477)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~PlL-l~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G 396 (477)
+.......|+++|+++|++|+|||.+++|.+ ...++|++++++|+.+..+.++..+...|...|
T Consensus 138 ---------------~~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G 202 (266)
T PRK10621 138 ---------------GLPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGG 202 (266)
T ss_pred ---------------chHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0001234789999999999999999999877 677999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011811 397 RFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFI 437 (477)
Q Consensus 397 ~i~~~~~l~l~~~sliGa~lG~~l~~~i~~~~~r~~liv~i 437 (477)
.+||..++.+.+++++|+++|+++.+|++++.+|+.+..++
T Consensus 203 ~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll 243 (266)
T PRK10621 203 KVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVS 243 (266)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHH
Confidence 99999999999999999999999999999999999665433
No 2
>COG0730 Predicted permeases [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=224.80 Aligned_cols=236 Identities=24% Similarity=0.385 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHH
Q 011811 79 EIVLGTIIGFFGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLAL 158 (477)
Q Consensus 79 ~ili~~iiG~lag~i~~v~GiGGG~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~l 158 (477)
.+++.+++|+++|++++..|+|||.+.+|.|..+ ++||+.|.+++++....+++++.+.|+|++| +||+.+.
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~-~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~-------v~~~~~~ 77 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLL-GLPPAAALGTSLLAVLFTSLSSALAYLKRGN-------VDWKLAL 77 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ccHHHHH
Confidence 5677778888888888888999999999999985 5999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhHHHHhhhhCCCCCCCCccccccCCCC
Q 011811 159 LIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSG 238 (477)
Q Consensus 159 ~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~kg~~~~kke~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (477)
.+.+++++|+.+|+.+..++|++.++..++.+++..+.+++++... + ++| +.+
T Consensus 78 ~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~----~---~~~-------------~~~------- 130 (258)
T COG0730 78 ILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL----A---KAE-------------DRA------- 130 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc----c---ccc-------------ccc-------
Confidence 9999999999999999999999999999999999999888766211 0 000 000
Q ss_pred CCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHhhhhhHHHHHHHHHHHHhhhcccc
Q 011811 239 PRSGPQKDAMEPEVTILENINWKELGLLVFVWVAFLGLQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRV 318 (477)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~v~~~~~~~~~~k~~~~~cs~~yw~~~~~~~pv~~~v~~~~~~~~~~~~~~ 318 (477)
++ . .+|+
T Consensus 131 ----------~~-~-----~~~~--------------------------------------------------------- 137 (258)
T COG0730 131 ----------AR-L-----RPLL--------------------------------------------------------- 137 (258)
T ss_pred ----------cc-c-----Ccch---------------------------------------------------------
Confidence 00 0 0111
Q ss_pred cccCCCCCCchhhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHH-cC
Q 011811 319 IASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGGGFIMGPLF-LELGVPPQVSSATATFAMTFSSSMSVVEYYL-LK 396 (477)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~PlL-l~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~-~G 396 (477)
......+|+.+|+++|++|+|||+...|.+ ...+.|.+.+++|+.+..++++..+...|.. .|
T Consensus 138 ---------------~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g 202 (258)
T COG0730 138 ---------------FALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALG 202 (258)
T ss_pred ---------------hHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 012355789999999999999999999999 5678999999999999999999999999998 69
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011811 397 RFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFI 437 (477)
Q Consensus 397 ~i~~~~~l~l~~~sliGa~lG~~l~~~i~~~~~r~~liv~i 437 (477)
.+||.....+.+++++|+++|+++.+|++++.+|+.+..++
T Consensus 203 ~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~ 243 (258)
T COG0730 203 AVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVL 243 (258)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999888999999999999999999999999999665433
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.94 E-value=1.1e-25 Score=218.92 Aligned_cols=227 Identities=27% Similarity=0.446 Sum_probs=190.2
Q ss_pred HHHHHHHHHhhhcCcccchhchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHH
Q 011811 84 TIIGFFGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPM 163 (477)
Q Consensus 84 ~iiG~lag~i~~v~GiGGG~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~l~l~~~ 163 (477)
+++++++|++++..|+|||.+.+|+|.. + +||++|++++......++..+.+.|+|+++ +||+...++.++
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~~~ 72 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRKHGN-------IDWKIVLPLIIG 72 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHHccc-------cchhhhhhhhhH
Confidence 3566667777777799999999999998 4 899999999999999999999999998887 999999999999
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhHHHHhhhhCCCCCCCCccccccCCCCCCCCC
Q 011811 164 LMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGP 243 (477)
Q Consensus 164 ~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~kg~~~~kke~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (477)
+++|+.+|+++...+|++.++..++++++..+.+++++. +.++ +++ .+
T Consensus 73 ~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~-----~~~~-~~~----------------~~---------- 120 (240)
T PF01925_consen 73 ALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKK-----RRKT-PKS----------------RS---------- 120 (240)
T ss_pred hHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcc-----cccc-ccc----------------cc----------
Confidence 999999999999999999999999999999888776541 1000 000 00
Q ss_pred CCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHhhhhhHHHHHHHHHHHHhhhcccccccCC
Q 011811 244 QKDAMEPEVTILENINWKELGLLVFVWVAFLGLQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKG 323 (477)
Q Consensus 244 ~~~~~~~~~~~~~~~~~k~~~~l~~v~~~~~~~~~~k~~~~~cs~~yw~~~~~~~pv~~~v~~~~~~~~~~~~~~~~~~~ 323 (477)
+ +++
T Consensus 121 -----~---------~~~-------------------------------------------------------------- 124 (240)
T PF01925_consen 121 -----S---------PPK-------------------------------------------------------------- 124 (240)
T ss_pred -----c---------ccc--------------------------------------------------------------
Confidence 0 000
Q ss_pred CCCCchhhhHHHHHHHHHHH-HHHHHhhcccchhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHH
Q 011811 324 DDGKSFRVFQLVSYCAFGVL-AGIVGGLLGLGGGFIMGPLFL-ELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVP 401 (477)
Q Consensus 324 ~~~~~~~~~~~~~~~~~G~~-aG~isGllGiGGG~i~~PlLl-~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~ 401 (477)
......+|.+ +|+++|++|+|||++..|++. ..|.|++++.+|+.+.+++++..+...|...|.+|++
T Consensus 125 ----------~~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~ 194 (240)
T PF01925_consen 125 ----------RWLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWP 194 (240)
T ss_pred ----------hhhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 0112334555 999999999999999999996 5799999999999999999999999999999999999
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011811 402 YALY---FVAVATIAAFVGQHVVRKLIILLGRASLIIFI 437 (477)
Q Consensus 402 ~~l~---l~~~sliGa~lG~~l~~~i~~~~~r~~liv~i 437 (477)
.... +.+++++|+++|+++.++++++.+|+.+.+++
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll 233 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILL 233 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777 99999999999999999999999999655433
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.26 E-value=1.3e-10 Score=115.73 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Q 011811 334 LVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIA 413 (477)
Q Consensus 334 ~~~~~~~G~~aG~isGllGiGGG~i~~PlLl~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~sliG 413 (477)
.......|+++|+++|+.| |||.+.+|++..+|+||++|++|+.+..+.++..+...|...+++||+....+.+++++|
T Consensus 12 ~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~G 90 (266)
T PRK10621 12 LGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVG 90 (266)
T ss_pred HHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3556778999999999999 999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 011811 414 AFVGQHVVRKLIILLGRASLIIFI 437 (477)
Q Consensus 414 a~lG~~l~~~i~~~~~r~~liv~i 437 (477)
+.+|..+...++++.+|..+.+++
T Consensus 91 a~~G~~l~~~l~~~~l~~~~~~~l 114 (266)
T PRK10621 91 SMSGALLVQYVQADILRQILPILV 114 (266)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998665443
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.23 E-value=2.1e-10 Score=113.55 Aligned_cols=105 Identities=30% Similarity=0.444 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Q 011811 333 QLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATI 412 (477)
Q Consensus 333 ~~~~~~~~G~~aG~isGllGiGGG~i~~PlLl~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~sli 412 (477)
......+.|+++|+++|++|+|||.+.+|.++..++||+.|.+|+.....+++..+...|++.|++||+.+..+.+++++
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~ 85 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALI 85 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 34567889999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 011811 413 AAFVGQHVVRKLIILLGRASLIIFI 437 (477)
Q Consensus 413 Ga~lG~~l~~~i~~~~~r~~liv~i 437 (477)
|+.+|+.+..+++++.++..+.+++
T Consensus 86 G~~lG~~l~~~~~~~~l~~~~~~~l 110 (258)
T COG0730 86 GAFLGALLALLLPAELLKLLFGLLL 110 (258)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999998654433
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=98.99 E-value=4.5e-09 Score=102.23 Aligned_cols=108 Identities=30% Similarity=0.572 Sum_probs=95.9
Q ss_pred HHHHHHH-HHHHHHHhhhcCcccchhchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHH
Q 011811 79 EIVLGTI-IGFFGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLA 157 (477)
Q Consensus 79 ~ili~~i-iG~lag~i~~v~GiGGG~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~ 157 (477)
...++.+ .|+++|++ |+|||.+.+|++....++|++++.+++..+.+.++..+...|...+. +||+..
T Consensus 128 ~~~~g~~~~G~~~G~~----g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~-------~~~~~~ 196 (240)
T PF01925_consen 128 LFLLGGLFIGFLSGLF----GIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGD-------VDWPML 196 (240)
T ss_pred hhhhhHHHhhHHHhhh----hccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------ccHHHH
Confidence 4555555 77777777 99999999999997789999999999999999999999999888776 899877
Q ss_pred HH---HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 011811 158 LL---IQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTK 197 (477)
Q Consensus 158 l~---l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~ 197 (477)
.. +.+++++|+.+|.++...+|++.++.++.++++..+.+
T Consensus 197 ~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 197 LLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 77 99999999999999999999999999999999888764
No 7
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=96.23 E-value=1.5 Score=43.80 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Q 011811 333 QLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATI 412 (477)
Q Consensus 333 ~~~~~~~~G~~aG~isGllGiGGG~i~~PlLl~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~sli 412 (477)
+.+...++|++++.--=+=|+.|..++..+ |.=.....+.+.+.. -|+.....+..|.++
T Consensus 141 ~~~~lf~~G~ia~~AMIlPGiSGS~iLlil----G~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~ 200 (257)
T PF04018_consen 141 SYLYLFLAGAIAACAMILPGISGSFILLIL----GLYEPVLSAISDLID----------------SNIPVLIPFGIGVVI 200 (257)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcHHHHHHHH----HhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHH
Confidence 345577778887777777788887554433 332233333333322 578888999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011811 413 AAFVGQHVVRKLIILLGRASLIIFILAFMIFVSAI 447 (477)
Q Consensus 413 Ga~lG~~l~~~i~~~~~r~~liv~il~~vi~iS~i 447 (477)
|....+|+.+++-+++.+..+.. +.+++.-|..
T Consensus 201 Gi~~~skll~~ll~~~~~~t~~~--i~GlviGSl~ 233 (257)
T PF04018_consen 201 GILLFSKLLSYLLKRYRSQTYAF--IIGLVIGSLR 233 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhH
Confidence 99999999999999998886654 3455665554
No 8
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=88.86 E-value=27 Score=34.92 Aligned_cols=89 Identities=10% Similarity=-0.068 Sum_probs=56.7
Q ss_pred hhcccchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHc-CC-----cCHHHHHHHHHHHHHHHHHHHHHHH
Q 011811 349 GLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLL-KR-----FPVPYALYFVAVATIAAFVGQHVVR 422 (477)
Q Consensus 349 GllGiGGG~i~~PlLl~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~-G~-----i~~~~~l~l~~~sliGa~lG~~l~~ 422 (477)
-+=|+.=.-..+...+..|++.++|.--|-+..++....+...-... .. .++.....-.+.+++-+++.-+...
T Consensus 158 l~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll 237 (259)
T PF02673_consen 158 LIPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLL 237 (259)
T ss_pred cCCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666677899999999888888888777666543332 11 2344455556666777777777777
Q ss_pred HhHHHHHHHHHHHHH
Q 011811 423 KLIILLGRASLIIFI 437 (477)
Q Consensus 423 ~i~~~~~r~~liv~i 437 (477)
|+.++..-+.+.++.
T Consensus 238 ~~~~~~~~~~F~~Y~ 252 (259)
T PF02673_consen 238 RFLKRRKLRPFAIYR 252 (259)
T ss_pred HHHhhCCceeehhHH
Confidence 766665544444443
No 9
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=79.06 E-value=49 Score=36.28 Aligned_cols=31 Identities=23% Similarity=-0.030 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCccchH
Q 011811 259 NWKELGLLVFVWVAFLGLQIAKNHTASCSIV 289 (477)
Q Consensus 259 ~~k~~~~l~~v~~~~~~~~~~k~~~~~cs~~ 289 (477)
.++|......+|...+..-..+.....|+.|
T Consensus 265 ~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~ 295 (495)
T KOG2533|consen 265 GFKEALKDPGVWPFSLCYFFLKLVNYGFSYW 295 (495)
T ss_pred HHHHHHhchhHHHHHHHHHHHhhccccHHHH
Confidence 4556666677887777666666555555443
No 10
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=77.08 E-value=13 Score=37.19 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 011811 155 DLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGVETWKRE 209 (477)
Q Consensus 155 ~l~l~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~kg~~~~kke 209 (477)
.-...+..+.++++.+|-..-..+|...-..+-++++++.++++++.|+++-..+
T Consensus 104 Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~ 158 (294)
T KOG2881|consen 104 GAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSE 158 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 3444566778888889888878899988888888999999999999998765433
No 11
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=71.11 E-value=1.2e+02 Score=30.53 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=52.0
Q ss_pred hhchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcC--------CCCCCCcccHHHHHHHHHHHHHHHHHHHH
Q 011811 102 GGIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRH--------PTLDMPIIDYDLALLIQPMLMLGISIGVA 173 (477)
Q Consensus 102 G~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~--------p~~~~plId~~l~l~l~~~~ilG~~iGa~ 173 (477)
=.+.+|- ++|++............+++.++-.++++|.-. ...+.+ -++++.+.+..+.+|.+.+|..
T Consensus 28 Hl~l~~~---llg~~~~~~~~f~v~lhlGtllAvl~~fr~di~~~~~~~~~~~~~~~-~~~~l~~~iii~tiP~~i~Gl~ 103 (268)
T PRK00281 28 HLILVGH---LLGFEDDFGKTFDVVIQLGAILAVVVYFRRRLWRLLGGSGKGGRGDR-EDRRLLLLVIVATIPAGVLGLL 103 (268)
T ss_pred HHHHHHH---HhCCCccccceehhHHHHhhHHHHHHHHHHHHHHHHHhhccccccCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554 246643322346667777777776666554310 011111 3678888899999999999988
Q ss_pred HHHhchHHHHH-HHHHHHHHHHHH
Q 011811 174 FNVIFADWMVT-VLLIVLFIGTST 196 (477)
Q Consensus 174 l~~~lp~~~l~-~l~~i~l~~~~~ 196 (477)
+...+++..-. ...++.+++.++
T Consensus 104 ~~~~i~~~l~~~~~v~~~Lii~gi 127 (268)
T PRK00281 104 FKDFIKEHLFSPIVVAIALIVGGI 127 (268)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHH
Confidence 87666543211 234445555443
No 12
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=65.28 E-value=1.6e+02 Score=29.75 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCC-------CCCCcccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Q 011811 120 ATAISKCMIMGAAVSTVYYNLKLRHPT-------LDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVT 184 (477)
Q Consensus 120 Avats~~~i~~~s~~~~~~~~~~~~p~-------~~~plId~~l~l~l~~~~ilG~~iGa~l~~~lp~~~l~ 184 (477)
+......+.+++-++-+++++++=.+. .|...=+|++.+....+.+|-+.+|..+...+......
T Consensus 43 ~~~F~iviqlGailAV~~~f~~~i~~~l~~~~l~~~~~~~~~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~ 114 (270)
T COG1968 43 GKSFEIVIQLGAILAVVVYFWNDLLRLLKGFRLKTDRESRRFRLWLKILVATIPAVVLGLLFKDFIKSHLFN 114 (270)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHccC
Confidence 666667777777777666665421110 11111227788888999999999998888766654433
No 13
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=49.70 E-value=2.4e+02 Score=27.02 Aligned_cols=47 Identities=9% Similarity=0.187 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhh
Q 011811 157 ALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGV 203 (477)
Q Consensus 157 ~l~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~kg~ 203 (477)
......+..+|..+|..+..++|++.-.++=.++++.++.+++++++
T Consensus 37 g~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 37 AVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667778888888888888877788888899999999998875
No 14
>COG2119 Predicted membrane protein [Function unknown]
Probab=49.42 E-value=58 Score=31.02 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhh
Q 011811 152 IDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKG 202 (477)
Q Consensus 152 Id~~l~l~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~kg 202 (477)
+--...+-+.+++++++..|-+++..+|++.++.+-++++++.+.+.++..
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667778899999999999999999999999999999999887776654
No 15
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=49.29 E-value=2.6e+02 Score=30.10 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=16.8
Q ss_pred HHHHHhhhhhhHhhhhccccCccc
Q 011811 444 VSAISLGGVGISNMIGKFHRHEYM 467 (477)
Q Consensus 444 iS~i~l~~~gi~~~i~~~~~~~~~ 467 (477)
..++.+..++-.|..+.+-||+||
T Consensus 388 ma~l~~~~i~~~~w~k~~~~~~~~ 411 (433)
T PRK09412 388 LAAVEMDDTGTTRIGKYVFNHSFM 411 (433)
T ss_pred HHHHhccCCCcchhhhhhcCCccc
Confidence 444555666777777888888876
No 16
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=48.92 E-value=2.4e+02 Score=26.63 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011811 398 FPVPYALYFVAVATIAAFVGQHVVRKLIILLGR 430 (477)
Q Consensus 398 i~~~~~l~l~~~sliGa~lG~~l~~~i~~~~~r 430 (477)
.+.+....+.+.+++++.+|+.+.+|+-+|+++
T Consensus 153 ~~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 153 FTPWMLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355666777888888888888888888888775
No 17
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=44.45 E-value=3.2e+02 Score=26.83 Aligned_cols=26 Identities=27% Similarity=0.110 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011811 153 DYDLALLIQPMLMLGISIGVAFNVIF 178 (477)
Q Consensus 153 d~~l~l~l~~~~ilG~~iGa~l~~~l 178 (477)
=|+....+..++++|+++|......-
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999998766544
No 18
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=41.82 E-value=71 Score=25.89 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 011811 152 IDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGT 194 (477)
Q Consensus 152 Id~~l~l~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~ 194 (477)
+=.....-+.....++..+|.++..++|++.++.+-+++++..
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~f 77 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLF 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 4445667778888999999999999999999999988877653
No 19
>COG3619 Predicted membrane protein [Function unknown]
Probab=41.58 E-value=3.5e+02 Score=26.55 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=29.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Q 011811 150 PIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTV 185 (477)
Q Consensus 150 plId~~l~l~l~~~~ilG~~iGa~l~~~lp~~~l~~ 185 (477)
...||..-.....+-+.|+..|+.+...+.++.+-.
T Consensus 167 ~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~ 202 (226)
T COG3619 167 KLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWV 202 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 348898888889999999999999988887764433
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.80 E-value=48 Score=28.07 Aligned_cols=16 Identities=19% Similarity=-0.008 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhhhhh
Q 011811 18 FLNFALAFVCVKAERG 33 (477)
Q Consensus 18 ~~~~~~~~~~~~~~~~ 33 (477)
++++++++.-++|.++
T Consensus 13 LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 13 LAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHhhhhhHHh
Confidence 3343444333444433
No 21
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=39.10 E-value=3.9e+02 Score=26.37 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Q 011811 335 VSYCAFGVLAGIVGGLLGLGGGFIMGPLF-LELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIA 413 (477)
Q Consensus 335 ~~~~~~G~~aG~isGllGiGGG~i~~PlL-l~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~sliG 413 (477)
+.....|..+|...+++. ...+ ..+|.|.+...+. .---.++-.+.-.--..|.++--.+....+.+++|
T Consensus 93 ~~~Il~~~~vG~~~~i~s-------~~~la~~lgl~~~~~~Sl--~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~G 163 (232)
T PRK04288 93 WWQILGGIVVGSVCSVLI-------IYLVAKLIQLDNAVMASM--LPQAATTAIALPVSAGIGGIKEITSFAVIFNAVII 163 (232)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHCcCHHHHHHH--hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 344555665555544433 2333 4677777554322 11111222222222234555555677788889999
Q ss_pred HHHHHHHHHHh--HHHHHHH
Q 011811 414 AFVGQHVVRKL--IILLGRA 431 (477)
Q Consensus 414 a~lG~~l~~~i--~~~~~r~ 431 (477)
+.+|-.+.+.+ .+..-|.
T Consensus 164 ai~g~~llk~~~I~~~~a~G 183 (232)
T PRK04288 164 YALGAKFLKLFRIKNPIAKG 183 (232)
T ss_pred HHHHHHHHHHcCCCCHHHHH
Confidence 99999998765 4444443
No 22
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=38.21 E-value=3.1e+02 Score=28.81 Aligned_cols=99 Identities=18% Similarity=0.335 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Q 011811 331 VFQLVSYCAFGVLAGIVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVA 410 (477)
Q Consensus 331 ~~~~~~~~~~G~~aG~isGllGiGGG~i~~PlLl~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~s 410 (477)
+.+....+..+++.|....+.|+..+.++++.+.. ..+.-.....+.++-.+..+.-.
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a----------------------~~v~~~~~~~l~~P~~l~~~~q~ 65 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLA----------------------GIVAGLRGLTLPLPRGLFKAGQV 65 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------HHHHHhccccccCChHHHHHHHH
Confidence 34556677788888888888888888777733321 01111222344555555666667
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011811 411 TIAAFVGQHVVRKLIILLGRASLIIFILAFMIFVSAISLGG 451 (477)
Q Consensus 411 liGa~lG~~l~~~i~~~~~r~~liv~il~~vi~iS~i~l~~ 451 (477)
++|..+|+++....-+.+.+....++.+......+++.++.
T Consensus 66 ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ 106 (352)
T COG3180 66 ILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGW 106 (352)
T ss_pred HHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776555555555555545544443
No 23
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=37.55 E-value=70 Score=25.20 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=32.9
Q ss_pred hchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 011811 103 GIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLK 141 (477)
Q Consensus 103 ~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~ 141 (477)
.+.+|++..++|.+..++.+.+........+-+..+|+-
T Consensus 19 ~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~~ 57 (67)
T PF05232_consen 19 LISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNWL 57 (67)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999888777777777777764
No 24
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=36.79 E-value=3.1e+02 Score=27.49 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011811 396 KRFPVPYALYFVAVATIAAFVGQHVVRKLIILLGRASLIIFILAFMIFVSA 446 (477)
Q Consensus 396 G~i~~~~~l~l~~~sliGa~lG~~l~~~i~~~~~r~~liv~il~~vi~iS~ 446 (477)
.+.|+.....+.+|..+|....+++...+-+++-......|+ +++..|.
T Consensus 50 ~~~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF~--GLIlgSi 98 (257)
T PF04018_consen 50 KKINLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFFF--GLILGSI 98 (257)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHH
Confidence 467888888889999999999888888887777655444433 4444444
No 25
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=36.12 E-value=1.8e+02 Score=21.71 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 011811 370 PQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVR 422 (477)
Q Consensus 370 ~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~ 422 (477)
+++..|...+...................-.+.++.....+++|+..-+|...
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~ 54 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLE 54 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677888888888888777777776556677788888888888887777654
No 26
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=36.07 E-value=92 Score=26.68 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 011811 406 FVAVATIAAFVGQHVVRKLII 426 (477)
Q Consensus 406 l~~~sliGa~lG~~l~~~i~~ 426 (477)
+++..++|.++|.++=++++.
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCC
Confidence 334445555555555555543
No 27
>PTZ00370 STEVOR; Provisional
Probab=35.80 E-value=2.5e+02 Score=28.69 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhchH
Q 011811 165 MLGISIGVAFNVIFAD 180 (477)
Q Consensus 165 ilG~~iGa~l~~~lp~ 180 (477)
+.|...|+..+.+.|-
T Consensus 242 lagtAAtaAsaaF~Py 257 (296)
T PTZ00370 242 LAGTAASAASSAFYPY 257 (296)
T ss_pred ccchHHHHHHHhhccc
Confidence 3455556665556663
No 28
>TIGR01112 mtrD N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit D. coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=35.19 E-value=47 Score=31.83 Aligned_cols=20 Identities=30% Similarity=0.936 Sum_probs=15.5
Q ss_pred CcccchhchHHHHHHHhCCCch
Q 011811 97 GGVGGGGIFVPMLSLIIGFDPK 118 (477)
Q Consensus 97 ~GiGGG~i~vP~L~~~~g~~~~ 118 (477)
+|+||+.++..++.. ++++.
T Consensus 148 GGiGG~L~Y~al~~~--~~~~~ 167 (223)
T TIGR01112 148 GGIGGALVYYALIEV--GLSPG 167 (223)
T ss_pred cccchhHHHHHHHhc--ccCcc
Confidence 688999999999874 45443
No 29
>PRK11588 hypothetical protein; Provisional
Probab=33.70 E-value=6.9e+02 Score=27.62 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=15.0
Q ss_pred chHHHHHH---HhCCCchhhhHHHHHHHH
Q 011811 104 IFVPMLSL---IIGFDPKSATAISKCMIM 129 (477)
Q Consensus 104 i~vP~L~~---~~g~~~~~Avats~~~i~ 129 (477)
.++|++.. .+|+|+-.++++..+...
T Consensus 173 ~f~pi~v~l~~alGyD~ivg~ai~~lg~~ 201 (506)
T PRK11588 173 AFAIIIAPLMVRLGYDSITTVLVTYVATQ 201 (506)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHhh
Confidence 35554432 258888777777555433
No 30
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.50 E-value=5.2e+02 Score=32.02 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 011811 406 FVAVATIAAFVGQHVVRKLII 426 (477)
Q Consensus 406 l~~~sliGa~lG~~l~~~i~~ 426 (477)
+..|+++|..++..+...+..
T Consensus 140 ~~gGGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhH
Confidence 356777777777666665544
No 31
>PRK10711 hypothetical protein; Provisional
Probab=33.39 E-value=4.8e+02 Score=25.72 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=61.7
Q ss_pred CCCccchHHHHHHhhhhhHHHHHHHHHHHHhhhcccccccCCCCCCchhhhHHHHHHHHHHHHHHHHhhcccchhHHHHH
Q 011811 282 HTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLLGLGGGFIMGP 361 (477)
Q Consensus 282 ~~~~cs~~yw~~~~~~~pv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~isGllGiGGG~i~~P 361 (477)
|.+--+...|.+. +.-|++.+++|+-.+..| +.+.-...|..+|.+.+++ ...
T Consensus 55 Y~~g~~~l~~lLg--PAtVALAvPLY~q~~~lk------------------~~~~~I~~~~~vG~~v~i~-------s~~ 107 (231)
T PRK10711 55 YFKGSEVLNDLLQ--PAVVALAFPLYEQLHQIR------------------ARWKSIISICFIGSVVAMV-------TGT 107 (231)
T ss_pred HHhccHHHHhhhh--HHHHHHHHHHHHhHHHHH------------------HHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3333344444443 344666777775433322 2233445555555444332 233
Q ss_pred HH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHH
Q 011811 362 LF-LELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL--IILLGRA 431 (477)
Q Consensus 362 lL-l~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i--~~~~~r~ 431 (477)
.+ ..+|.|++...+.. ---.++-.+.-.--..|.++--.+....+.+++|+.+|..+.+.+ .+..-|.
T Consensus 108 ~l~~~lg~~~~~~~Sl~--pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~rI~~~~A~G 178 (231)
T PRK10711 108 AVALWMGATPEIAASIL--PKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARG 178 (231)
T ss_pred HHHHHHCcCHHHHHHHh--hhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 44 46787776654321 111111111211223345555566777888999999999999766 3444443
No 32
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=32.83 E-value=4.3e+02 Score=24.95 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011811 399 PVPYALYFVAVATIAAFVGQHVVRKLIILLGR 430 (477)
Q Consensus 399 ~~~~~l~l~~~sliGa~lG~~l~~~i~~~~~r 430 (477)
+.+....+.+.+++++.+|+.+.+|+-+|+++
T Consensus 157 ~~~~~~~~~~~t~v~~~iG~~iG~kllkKHF~ 188 (189)
T TIGR02185 157 SAIWAVIMIVLTAVAGIAGVLIGKKLLKKHFE 188 (189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455667777888888888888888887765
No 33
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=32.74 E-value=4.9e+02 Score=25.59 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=51.4
Q ss_pred hhchHHHHHHHhCCCchhhhH--HHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhch
Q 011811 102 GGIFVPMLSLIIGFDPKSATA--ISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFA 179 (477)
Q Consensus 102 G~i~vP~L~~~~g~~~~~Ava--ts~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~l~l~~~~ilG~~iGa~l~~~lp 179 (477)
|..+.|++....+.++..+++ .......+...+...+ ..| -|.....-++.++++|-.+....+.+++
T Consensus 98 G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~--~tk--------~Dls~l~~~l~~aligLiiasvvn~Fl~ 167 (233)
T COG0670 98 GLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGY--TTK--------RDLSSLGSFLFMALIGLIIASLVNIFLG 167 (233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH--HHh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777777655555332232 2333333433333333 223 4777888889999999999999999988
Q ss_pred HHHHHHHHHHHHHH
Q 011811 180 DWMVTVLLIVLFIG 193 (477)
Q Consensus 180 ~~~l~~l~~i~l~~ 193 (477)
...+.+++..+..+
T Consensus 168 s~~l~~~IS~lgvl 181 (233)
T COG0670 168 SSALHLAISVLGVL 181 (233)
T ss_pred CcHHHHHHHHHHHH
Confidence 87777666654443
No 34
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=31.24 E-value=3.9e+02 Score=23.97 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhchHHHHHHHhCCCchhhhHHHHHHH
Q 011811 79 EIVLGTIIGFFGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSATAISKCMI 128 (477)
Q Consensus 79 ~ili~~iiG~lag~i~~v~GiGGG~i~vP~L~~~~g~~~~~Avats~~~i 128 (477)
.+-.++.+|++.|++= .. |...+..-.+..++..+...|...+.+..
T Consensus 21 ~iA~g~AiG~fig~~P-~~--g~~~~l~~~la~~~r~N~~aa~~~~~i~n 67 (154)
T PF09835_consen 21 SIALGFAIGVFIGFLP-IF--GLQTVLAIALALLFRLNKPAAILGTWISN 67 (154)
T ss_pred HHHHHHHHHHHHHHHh-cc--hHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 5677777888777662 21 45666666666667777766666655543
No 35
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=31.08 E-value=1.5e+02 Score=24.05 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011811 403 ALYFVAVATIAAFVGQHVVRKLIILLGRASLI 434 (477)
Q Consensus 403 ~l~l~~~sliGa~lG~~l~~~i~~~~~r~~li 434 (477)
...+.....++..+|..+.+++|+++.+..-.
T Consensus 40 ~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~ 71 (78)
T PF01169_consen 40 TLALALATGLAVLLGSWLASRIPERYIKWVAG 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 34577788999999999999999999997433
No 36
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=30.88 E-value=4.8e+02 Score=24.93 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhch
Q 011811 152 IDYDLALLIQPMLMLGISIGVAFNVIFA 179 (477)
Q Consensus 152 Id~~l~l~l~~~~ilG~~iGa~l~~~lp 179 (477)
=-++-.++-..+.++|..+|..+...++
T Consensus 138 ~~~rA~~~~~~~L~~G~~lGs~l~~~l~ 165 (194)
T PF11833_consen 138 KLGRAFLWTLGGLVVGLILGSLLASWLP 165 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3467777777778888888888876654
No 37
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=30.05 E-value=3.8e+02 Score=29.68 Aligned_cols=49 Identities=29% Similarity=0.330 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchh-chHHHHHHHhCCCchhhhHHHHHHH
Q 011811 79 EIVLGTIIGFFGAAFGSVGGVGGGG-IFVPMLSLIIGFDPKSATAISKCMI 128 (477)
Q Consensus 79 ~ili~~iiG~lag~i~~v~GiGGG~-i~vP~L~~~~g~~~~~Avats~~~i 128 (477)
+.-+.++.-.+++++=++.|.|-.. +..|+|.. +|+||-.|+..+++..
T Consensus 100 r~q~lli~~~Fg~flEgaaGFGtpvAI~aplLv~-LGf~P~~Aa~l~Li~n 149 (522)
T PF02652_consen 100 RVQVLLIAFGFGAFLEGAAGFGTPVAIAAPLLVA-LGFPPLQAAALCLIGN 149 (522)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-cCCChHHHHHHHHHHc
Confidence 3444444444667777788999886 56677776 7999999999988753
No 38
>PRK11469 hypothetical protein; Provisional
Probab=29.58 E-value=4.9e+02 Score=24.61 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhh
Q 011811 159 LIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGV 203 (477)
Q Consensus 159 ~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~kg~ 203 (477)
.-..+..+|...|..+..++|++. .++-..+++.++.+++++++
T Consensus 46 ~q~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 46 VETLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 334556677778888888888755 77777788899999998764
No 39
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=29.13 E-value=5.7e+02 Score=26.22 Aligned_cols=88 Identities=22% Similarity=0.356 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCcccchhchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccH
Q 011811 75 KFGWEIVLGTIIGFFGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDY 154 (477)
Q Consensus 75 ~~~~~ili~~iiG~lag~i~~v~GiGGG~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~p~~~~plId~ 154 (477)
-|.|..++....++ +.++ ||-++-|++..+ +++-.|+-.+.+.+=. ...+ ++.+ + |.. .+-
T Consensus 105 tF~~ssIlLl~~Si-ss~i-------G~YiLapl~~~i--~~~~gAaila~iviP~---~~~y-~ln~-~---~~s-~~~ 165 (299)
T PF05884_consen 105 TFSWSSILLLGFSI-SSFI-------GGYILAPLFGII--FGPFGAAILAYIVIPL---IAYY-YLNK-E---DGS-LAE 165 (299)
T ss_pred HHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHH--hcchhHHHHHHHHHHH---HHHh-hccc-c---cCc-hHH
Confidence 35676666666663 3445 688999999875 5666666554443222 1111 2211 1 222 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hchHH
Q 011811 155 DLALLIQPMLMLGISIGVAFNV-IFADW 181 (477)
Q Consensus 155 ~l~l~l~~~~ilG~~iGa~l~~-~lp~~ 181 (477)
.....+....+=|...|+.++. +++..
T Consensus 166 ~R~~ll~~a~~QGvL~Ga~ls~~~l~se 193 (299)
T PF05884_consen 166 SRLALLFFALFQGVLVGAGLSHLYLSSE 193 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 4455567777889999999875 55543
No 40
>COG2119 Predicted membrane protein [Function unknown]
Probab=28.92 E-value=5.2e+02 Score=24.72 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q 011811 152 IDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLK 201 (477)
Q Consensus 152 Id~~l~l~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~k 201 (477)
+=-..+.-+..+-.+++.+|.+....+|+....+..+..++..+.+++..
T Consensus 36 v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~e 85 (190)
T COG2119 36 VFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIE 85 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcc
Confidence 44566777888899999999999999999999999999988887665543
No 41
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=28.52 E-value=6.4e+02 Score=26.93 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=30.1
Q ss_pred hhcccchhHHHHHHHH---hcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 011811 349 GLLGLGGGFIMGPLFL---ELGVPPQVSSATATFAMTFSSSMSVVEYYLLKR 397 (477)
Q Consensus 349 GllGiGGG~i~~PlLl---~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~ 397 (477)
-+.|.|.|..+.-.+. .---++++|.+.|.+..-+.-+.+...=+..|.
T Consensus 304 ~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 304 LLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred HHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 4677775544443332 234688888888888877766655555444443
No 42
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.27 E-value=1.8e+02 Score=25.05 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=11.9
Q ss_pred HHhhhHHHHHHhHhHH
Q 011811 199 FLKGVETWKRETILKK 214 (477)
Q Consensus 199 ~~kg~~~~kke~~~~~ 214 (477)
+-||+..|||..+.|.
T Consensus 32 IeKGIa~YKKQqK~Ka 47 (103)
T PF11169_consen 32 IEKGIAEYKKQQKEKA 47 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999998776553
No 43
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=28.02 E-value=2.9e+02 Score=29.93 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=17.1
Q ss_pred hhchHHHHHHHhCCCchhhhHHHHH
Q 011811 102 GGIFVPMLSLIIGFDPKSATAISKC 126 (477)
Q Consensus 102 G~i~vP~L~~~~g~~~~~Avats~~ 126 (477)
..+.+|++.. +|+|+..+++...+
T Consensus 143 ~~il~pi~~a-lG~d~~~a~a~v~~ 166 (465)
T PF03606_consen 143 MPILIPILIA-LGYDPITAAAAVIL 166 (465)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 4556676665 69999888887543
No 44
>COG1971 Predicted membrane protein [Function unknown]
Probab=27.54 E-value=5.5e+02 Score=24.58 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhh
Q 011811 158 LLIQPMLMLGISIGVAFNVIFADWMVTVLLIVLFIGTSTKAFLKGV 203 (477)
Q Consensus 158 l~l~~~~ilG~~iGa~l~~~lp~~~l~~l~~i~l~~~~~~~~~kg~ 203 (477)
..-..+.++|..+|-.+++++.++ -.++-.+++..++.+|.+++.
T Consensus 45 ~f~~i~pliG~~~g~~~s~~i~~~-~~wigf~lL~~lG~~mI~e~f 89 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLSTFIAEW-AHWIGFVLLIILGLKMIIEGF 89 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 334456667777777777666654 455566677888999988875
No 45
>COG2035 Predicted membrane protein [Function unknown]
Probab=27.20 E-value=6.7e+02 Score=25.43 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhcCcccchhchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHH
Q 011811 85 IIGFFGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPML 164 (477)
Q Consensus 85 iiG~lag~i~~v~GiGGG~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~l~l~~~~ 164 (477)
+-|++=|+-..+=|+.||.+.+ ++|+--+-. .++++...+. .++ .||....++..+.
T Consensus 9 ~kG~~mG~AdivPGVSGGTiAl-----ilGIYerlI----------~~i~~~~~~~-~~~-------~~~~fLi~l~~G~ 65 (276)
T COG2035 9 FKGILMGAADIVPGVSGGTIAL-----ILGIYERLI----------EAIAGIFKLD-EFK-------RNVLFLIPLGIGM 65 (276)
T ss_pred HHHHHHHHhhcCCCCchhHHHH-----HHHHHHHHH----------HHHhhhhhhh-hhh-------hhhHHHHHHHHHH
Confidence 3455555567788998888643 223222221 2222222221 123 7888888888888
Q ss_pred HHHHHHHHHHHHhchHH
Q 011811 165 MLGISIGVAFNVIFADW 181 (477)
Q Consensus 165 ilG~~iGa~l~~~lp~~ 181 (477)
+.|...=+.+..++=++
T Consensus 66 ~~~i~~~a~ii~~ll~~ 82 (276)
T COG2035 66 LLGIFLFAKIIEYLLEN 82 (276)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88877777766654443
No 46
>PRK01844 hypothetical protein; Provisional
Probab=27.11 E-value=1.6e+02 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011811 404 LYFVAVATIAAFVGQHVVRKLIILLGRA 431 (477)
Q Consensus 404 l~l~~~sliGa~lG~~l~~~i~~~~~r~ 431 (477)
+..+++.++|...|-.++++.-+++++.
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777766653
No 47
>TIGR03727 urea_t_UrtC_arc urea ABC transporter, permease protein UrtC, archaeal type. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtC subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=26.77 E-value=7.5e+02 Score=25.86 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=37.8
Q ss_pred HHHHHHhCCCchhhhHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCcccHHHHHHH-------HHHHHHHHHHHHHHHHhc
Q 011811 107 PMLSLIIGFDPKSATAISKCMIM-GAAVSTVYYNLKLRHPTLDMPIIDYDLALLI-------QPMLMLGISIGVAFNVIF 178 (477)
Q Consensus 107 P~L~~~~g~~~~~Avats~~~i~-~~s~~~~~~~~~~~~p~~~~plId~~l~l~l-------~~~~ilG~~iGa~l~~~l 178 (477)
|-.....|+|++.....+....- .+.+++..+-...+.-+.+. .+|...... ..+++.|+.+|+.+...+
T Consensus 224 ~~aA~~~Gi~v~~~~~~~f~is~~laglaG~l~a~~~~~v~p~~--~~~~~~~~~~~~~vlGG~gs~~G~i~Ga~ll~~l 301 (364)
T TIGR03727 224 EERTEMFGYNVKKIKLVVFTFGGALAGLSGVFYANWGNYIDPSV--FTILFATLPVVWVSLGGRESLLGAIVATVAIEWL 301 (364)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc--ccHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 55555678887766665443322 34455555444333211121 344321111 235778899998877665
Q ss_pred hH
Q 011811 179 AD 180 (477)
Q Consensus 179 p~ 180 (477)
++
T Consensus 302 ~~ 303 (364)
T TIGR03727 302 RK 303 (364)
T ss_pred HH
Confidence 54
No 48
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=25.91 E-value=73 Score=31.01 Aligned_cols=15 Identities=47% Similarity=1.090 Sum_probs=13.3
Q ss_pred CcccchhchHHHHHH
Q 011811 97 GGVGGGGIFVPMLSL 111 (477)
Q Consensus 97 ~GiGGG~i~vP~L~~ 111 (477)
+|+||+.++..++..
T Consensus 152 GGiGG~LiY~al~~~ 166 (240)
T PRK00968 152 GGIGGALIYIALLEL 166 (240)
T ss_pred cccchHHHHHHHHHh
Confidence 688999999999876
No 49
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.93 E-value=5.9e+02 Score=24.01 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhcc----------cchhHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHcCCcC-HHHH
Q 011811 336 SYCAFGVLAGIVGGLLG----------LGGGFIMGPLFLELGVPPQVSSATATFA-MTFSSSMSVVEYYLLKRFP-VPYA 403 (477)
Q Consensus 336 ~~~~~G~~aG~isGllG----------iGGG~i~~PlLl~~Gi~~~~A~ATs~~~-~~f~s~~s~i~y~~~G~i~-~~~~ 403 (477)
....+|+.+|++-|+++ ++-+.++-|....-=....--...+.++ ..++-.++++.|...+++. +..+
T Consensus 22 ~~~~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~G 101 (173)
T PF11085_consen 22 KVLEIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPG 101 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 35578888888887765 4445555565531101111112222333 3334445556666666653 2222
Q ss_pred HH------HHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHH
Q 011811 404 LY------FVAVATIAAFVG-QHVVRKLIILLGRASLIIFILAFM 441 (477)
Q Consensus 404 l~------l~~~sliGa~lG-~~l~~~i~~~~~r~~liv~il~~v 441 (477)
+. .++.-+++-.++ .+-..+++..+.-..+-+++|-++
T Consensus 102 i~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~CiyiLyGl 146 (173)
T PF11085_consen 102 ILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYILYGL 146 (173)
T ss_pred HHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHHHHHH
Confidence 22 222222222221 223455555555555555555544
No 50
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism]
Probab=24.85 E-value=7e+02 Score=24.83 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=41.9
Q ss_pred hhchHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH--HHhch
Q 011811 102 GGIFVPMLSLIIGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAF--NVIFA 179 (477)
Q Consensus 102 G~i~vP~L~~~~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~l~l~~~~ilG~~iGa~l--~~~lp 179 (477)
|.-.+..+. ++-....-.+.+.|.+.++-+.+.+.....|+ ....+..++.+..+|.+-|+.. +.|++
T Consensus 98 ~Valv~~vL--~~~~l~~~~a~~~~Ai~GALl~TliLl~~aRr--------~~lTarLLLvGVALGIi~~A~mTWA~YFS 167 (326)
T COG4139 98 GVGLIAAVL--LGQGQLPNWALGLCAIAGALIITLILLRFARR--------HLSTSRLLLAGVALGIICSALMTWAIYFS 167 (326)
T ss_pred cHHHHHHHH--hcCCcCchHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHhhheee
Confidence 333444443 34555556677778888877766554333221 1122777888888888888764 45666
Q ss_pred HH
Q 011811 180 DW 181 (477)
Q Consensus 180 ~~ 181 (477)
+.
T Consensus 168 ~s 169 (326)
T COG4139 168 TS 169 (326)
T ss_pred cc
Confidence 54
No 51
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=24.40 E-value=5.9e+02 Score=23.82 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcC--CCccchHHHHHH--hhhhhHHHHHHHHHHHHhhh
Q 011811 259 NWKELGLLVFVWVAFLGLQIAKNH--TASCSIVYWVLD--LLQIPVSLVVSLYEAISLYK 314 (477)
Q Consensus 259 ~~k~~~~l~~v~~~~~~~~~~k~~--~~~cs~~yw~~~--~~~~pv~~~v~~~~~~~~~~ 314 (477)
.|+++.. .|..|....-.=|. --++|...|+.. .-..|..+.....+...++|
T Consensus 115 ~W~~lt~---~W~~fF~~~a~lN~~va~~~S~~~Wv~fk~fG~~~l~~~f~i~q~~~l~k 171 (176)
T PF04279_consen 115 GWRRLTL---RWALFFLFLAALNEYVAYNFSEDTWVNFKVFGLMGLTFLFVIAQIPYLRK 171 (176)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6877654 45444433332221 124577788874 22344444444444444444
No 52
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=24.32 E-value=8.5e+02 Score=27.02 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhch-HHHHHHHhCCCchhhhHHHHHHHH
Q 011811 79 EIVLGTIIGFFGAAFGSVGGVGGGGIF-VPMLSLIIGFDPKSATAISKCMIM 129 (477)
Q Consensus 79 ~ili~~iiG~lag~i~~v~GiGGG~i~-vP~L~~~~g~~~~~Avats~~~i~ 129 (477)
++-+.++.-.+++++=++.|.|-.... .|+|.. +|++|-.|+..+++...
T Consensus 106 rvq~llI~~~Fg~flEg~aGFGtpvAI~aplLv~-LGf~Pl~Aa~i~Li~ns 156 (530)
T TIGR00795 106 RIQVLLIGFCFGAFLEGAAGFGTPVAITAAILVG-LGFKPLYAAGLCLIANT 156 (530)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHH-cCCChHHHHHHHHHHcC
Confidence 444444555577788888898877654 555554 79999999999888665
No 53
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.21 E-value=53 Score=31.77 Aligned_cols=27 Identities=30% Similarity=0.568 Sum_probs=20.5
Q ss_pred HHHHHHhhhcCcccchhchHHHHHHHh
Q 011811 87 GFFGAAFGSVGGVGGGGIFVPMLSLII 113 (477)
Q Consensus 87 G~lag~i~~v~GiGGG~i~vP~L~~~~ 113 (477)
+|++|.+++.+|+.||.++-=.|..++
T Consensus 137 sFLG~AlqTAAGVAGGMlL~n~L~~mF 163 (233)
T COG3416 137 SFLGGALQTAAGVAGGMLLANGLEGMF 163 (233)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 788899999999988877655555443
No 54
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=24.07 E-value=7.5e+02 Score=24.90 Aligned_cols=131 Identities=8% Similarity=-0.020 Sum_probs=0.0
Q ss_pred chhchHHHHHHHhCCCchhhhHHHH--------HHHHHHHHHHHHHHHHhcC-CCCCCCcccHHHH-----------HHH
Q 011811 101 GGGIFVPMLSLIIGFDPKSATAISK--------CMIMGAAVSTVYYNLKLRH-PTLDMPIIDYDLA-----------LLI 160 (477)
Q Consensus 101 GG~i~vP~L~~~~g~~~~~Avats~--------~~i~~~s~~~~~~~~~~~~-p~~~~plId~~l~-----------l~l 160 (477)
|+.+-+|+-+. .|.++..|++.+. +.++...+.+.+.|+-.|+ .+.|..-+++... .+.
T Consensus 77 a~iigta~AI~-sG~~~e~AialAvPva~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~ 155 (265)
T TIGR00822 77 ASIISTILVIS-GHQSIGTGIALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPA 155 (265)
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHH-----------------------------
Q 011811 161 QPMLMLGISIGVAFNVIFADWMVTVL--LIVLFIGTSTKAFLKGVETWKRE----------------------------- 209 (477)
Q Consensus 161 ~~~~ilG~~iGa~l~~~lp~~~l~~l--~~i~l~~~~~~~~~kg~~~~kke----------------------------- 209 (477)
..+...|+-.=..+...+|+|+..-+ .+-++-.++.-++.|- +||||
T Consensus 156 fla~~~G~~~v~~il~~iP~~v~~Gl~vaggmLPAvGfAmLl~~--m~~k~~~~ff~lGF~laayl~l~~l~iAiig~~~ 233 (265)
T TIGR00822 156 LIVALVSQSAVQAMLKAIPEVVTHGLQIAGGIIVVVGYAMVLRM--MFKAYLMPFFYLGFLFAAYTDFSLLAFGAVGGAG 233 (265)
T ss_pred HHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHHHHHHHHHHHH--HhhcchHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q ss_pred -------hHhHHHHhhhhCCCCCCCCcccccc
Q 011811 210 -------TILKKEAARCLGSNGAGAGEVEYKS 234 (477)
Q Consensus 210 -------~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (477)
+.++++++.+-++..+.+|++||++
T Consensus 234 A~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (265)
T TIGR00822 234 ALLYIQLNPKSHRAQAAPSPAASKNELDDYDD 265 (265)
T ss_pred HHHHHHhccccccccCCCCCCCCccccccccC
No 55
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=23.62 E-value=7.1e+02 Score=24.48 Aligned_cols=65 Identities=18% Similarity=0.408 Sum_probs=38.1
Q ss_pred HHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 358 IMGPLF-LELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 358 i~~PlL-l~~Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
...+.+ ..+|.+++... +..---.++-.+.-.--..|..+--.+....+.+++|+.+|..+.+.+
T Consensus 103 ~s~~~la~~lg~~~~i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 103 ISGTLLALLLGLGPEIIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHCcCHHHHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555 57788866654 222222222222222233444444456677888899999999998865
No 56
>PF04207 MtrD: Tetrahydromethanopterin S-methyltransferase, subunit D ; InterPro: IPR005779 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit D in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=23.55 E-value=97 Score=29.87 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=14.0
Q ss_pred cCcccchhchHHHHHHH
Q 011811 96 VGGVGGGGIFVPMLSLI 112 (477)
Q Consensus 96 v~GiGGG~i~vP~L~~~ 112 (477)
++|+||+.++..++...
T Consensus 147 lGG~GG~LiY~aL~~~~ 163 (223)
T PF04207_consen 147 LGGIGGALIYYALYNVG 163 (223)
T ss_pred hcccchHHHHHHHHHhh
Confidence 36889999999999764
No 57
>PRK09695 glycolate transporter; Provisional
Probab=23.02 E-value=5.7e+02 Score=28.59 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhcCcccchhchHHHHHHHhCCCchhhhHHHHHHHH
Q 011811 79 EIVLGTIIGFFGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSATAISKCMIM 129 (477)
Q Consensus 79 ~ili~~iiG~lag~i~~v~GiGGG~i~vP~L~~~~g~~~~~Avats~~~i~ 129 (477)
++.+.++.-.+++++=+++|.|-.....+-+..-+|++|-.|+..+++...
T Consensus 115 riQ~LlI~~~Fg~FlEg~aGFGtPvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (560)
T PRK09695 115 RLQVLLIGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANT 165 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 444555555677888888899987765544444489999999999888765
No 58
>PRK00523 hypothetical protein; Provisional
Probab=22.99 E-value=2e+02 Score=23.15 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011811 404 LYFVAVATIAAFVGQHVVRKLIILLGR 430 (477)
Q Consensus 404 l~l~~~sliGa~lG~~l~~~i~~~~~r 430 (477)
+..+++.++|...|-.++++.-+++++
T Consensus 9 ~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 9 GLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777777777665
No 59
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=22.72 E-value=36 Score=24.34 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=13.8
Q ss_pred hhcCcccchhchHHHHHH
Q 011811 94 GSVGGVGGGGIFVPMLSL 111 (477)
Q Consensus 94 ~~v~GiGGG~i~vP~L~~ 111 (477)
++++++|++...+|+...
T Consensus 20 ~~~gavG~~~~a~Pfv~s 37 (41)
T PF10399_consen 20 SAVGAVGAAAAAWPFVSS 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344577889999999875
No 60
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.55 E-value=73 Score=23.21 Aligned_cols=28 Identities=14% Similarity=0.463 Sum_probs=13.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhcccc
Q 011811 291 WVLDLLQIPVSLVVSLYEAISLYKGRRV 318 (477)
Q Consensus 291 w~~~~~~~pv~~~v~~~~~~~~~~~~~~ 318 (477)
|+...+.+.+.+++..|.....|++-|.
T Consensus 4 wlt~iFsvvIil~If~~iGl~IyQkikq 31 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIYQKIKQ 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555544444554333
No 61
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.97 E-value=6.6e+02 Score=31.15 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhchHH
Q 011811 160 IQPMLMLGISIGVAFNVIFADW 181 (477)
Q Consensus 160 l~~~~ilG~~iGa~l~~~lp~~ 181 (477)
+..|+++|..++..+..++...
T Consensus 140 ~~gGGIIG~lLs~lL~~LfG~v 161 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQPLLHSS 161 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhHH
Confidence 3568888888888887777654
No 62
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=21.84 E-value=9.4e+02 Score=25.22 Aligned_cols=183 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred hCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHH
Q 011811 113 IGFDPKSATAISKCMIMGAAVSTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADW-MVTVLLIVLF 191 (477)
Q Consensus 113 ~g~~~~~Avats~~~i~~~s~~~~~~~~~~~~p~~~~plId~~l~l~l~~~~ilG~~iGa~l~~~lp~~-~l~~l~~i~l 191 (477)
..+|..+..+...+..+.+..-..-..+.||- ..|.+++|.++++.+...+.+. .+..-+-.-+
T Consensus 1 i~l~~~~tl~la~ilLliG~~Lr~ki~~lqk~---------------~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l 65 (368)
T PF03616_consen 1 IKLDALQTLALASILLLIGKFLRAKIPFLQKL---------------FIPASVIGGLIFAILPLILGGFGGISISFDTSL 65 (368)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhHHHHHc---------------cCCchHHHHHHHHHHHHHHHhcCceEEEechhH
Q ss_pred HHHHHHHHHhhhHHHHHHhHhHHHHhhhhCCCCCCCCccccccCCCCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHH
Q 011811 192 IGTSTKAFLKGVETWKRETILKKEAARCLGSNGAGAGEVEYKSLPSGPRSGPQKDAMEPEVTILENINWKELGLLVFVWV 271 (477)
Q Consensus 192 ~~~~~~~~~kg~~~~kke~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~v~~ 271 (477)
--.-...++-++..-.+.+..|| .+|+.......
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkk--------------------------------------------gg~~~~~~~~~-- 99 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKK--------------------------------------------GGKAVLIFLLI-- 99 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHh--------------------------------------------hHHHHHHHHHH--
Q ss_pred HHHHHHHhhcCCCccchHHHHHHhhhhhHHHHHHHHHHHHhhhcccccccCCCCCCchhhhHHHHHHHHHHHHHHHHhhc
Q 011811 272 AFLGLQIAKNHTASCSIVYWVLDLLQIPVSLVVSLYEAISLYKGRRVIASKGDDGKSFRVFQLVSYCAFGVLAGIVGGLL 351 (477)
Q Consensus 272 ~~~~~~~~k~~~~~cs~~yw~~~~~~~pv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~isGll 351 (477)
|...||+.|..=+-++..... -...|.+.|-++=.-
T Consensus 100 --------------~~~~~~~Q~~vG~~la~l~gl------------------------------~p~~Gll~Gsi~f~G 135 (368)
T PF03616_consen 100 --------------AIILAFLQNIVGLGLAKLLGL------------------------------DPLFGLLAGSIGFTG 135 (368)
T ss_pred --------------HHHHHHHHHHHHHHHHHHhCC------------------------------CchHHHHhccccccC
Q ss_pred ccchhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011811 352 GLGGGFIMGPLFLEL-GVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRK 423 (477)
Q Consensus 352 GiGGG~i~~PlLl~~-Gi~~~~A~ATs~~~~~f~s~~s~i~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~ 423 (477)
|-|.+....|.+-.. |++-....|.+... .-++.++++|+.++.+..+|
T Consensus 136 GhGTAaa~g~~fe~~~G~~~a~~vg~a~AT-----------------------~Glv~G~liGgpi~~~lirk 185 (368)
T PF03616_consen 136 GHGTAAAFGPTFEELYGWEGATSVGMAAAT-----------------------FGLVVGGLIGGPIANWLIRK 185 (368)
T ss_pred CccHHHHHHHHHHHhcChhhhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHc
No 63
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=21.77 E-value=9.4e+02 Score=25.30 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 011811 162 PMLMLGISIGVAFNVIF 178 (477)
Q Consensus 162 ~~~ilG~~iGa~l~~~l 178 (477)
.+.++|..++..+....
T Consensus 380 lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 380 CAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHccccceeeeehhc
Confidence 33344444444443333
No 64
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.26 E-value=2.9e+02 Score=23.63 Aligned_cols=25 Identities=12% Similarity=0.398 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchH
Q 011811 156 LALLIQPMLMLGISIGVAFNVIFAD 180 (477)
Q Consensus 156 l~l~l~~~~ilG~~iGa~l~~~lp~ 180 (477)
+...+..+.++|+.+|.++=..++.
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3445666777888888888777775
No 65
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.42 E-value=8.4e+02 Score=24.10 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchH
Q 011811 156 LALLIQPMLMLGISIGVAFNVIFAD 180 (477)
Q Consensus 156 l~l~l~~~~ilG~~iGa~l~~~lp~ 180 (477)
..+.+.-+.-.|+.+|..+...+|+
T Consensus 36 ~~l~~~~~fa~GvlL~~a~~hLLPe 60 (317)
T PF02535_consen 36 RILSLLNAFAAGVLLGTAFLHLLPE 60 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3444566666888889888888886
No 66
>COG5547 Small integral membrane protein [Function unknown]
Probab=20.17 E-value=4.2e+02 Score=20.51 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=20.1
Q ss_pred HHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHH
Q 011811 166 LGISIGVAFNV-IFADWMVTVLLIVLFIGTSTK 197 (477)
Q Consensus 166 lG~~iGa~l~~-~lp~~~l~~l~~i~l~~~~~~ 197 (477)
+|..+|..++- ++.-...+.++.++++..++.
T Consensus 12 IgglvglliAili~t~GfwKtilviil~~lGv~ 44 (62)
T COG5547 12 IGGLVGLLIAILILTFGFWKTILVIILILLGVY 44 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655554 344456777788888877763
Done!