Query 011811
Match_columns 477
No_of_seqs 204 out of 1924
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 30.1 3.7E+02 0.013 26.9 11.8 11 140-150 392-402 (511)
2 4gc0_A D-xylose-proton symport 15.6 6.9E+02 0.024 24.2 10.1 23 411-433 65-87 (491)
3 2o9g_A Aquaporin Z; integral m 10.8 3.5E+02 0.012 25.0 5.7 34 391-424 72-105 (234)
4 3llq_A Aquaporin Z 2; aquapori 10.4 3.2E+02 0.011 25.8 5.3 33 392-424 98-130 (256)
5 3gd8_A Aquaporin-4; proton exc 10.4 3.7E+02 0.013 24.7 5.7 33 392-424 73-105 (223)
6 3c02_A Aquaglyceroporin; membr 10.3 4E+02 0.014 25.0 5.9 36 390-425 75-110 (258)
7 3d9s_A Aquaporin-5, AQP-5; aqu 10.1 3.7E+02 0.013 25.5 5.7 33 392-424 77-109 (266)
8 2w2e_A AQY1, aquaporin, aquapo 10.1 3.7E+02 0.013 25.7 5.7 34 391-424 118-151 (279)
9 1j4n_A Aquaporin 1; membrane p 10.0 3.7E+02 0.013 25.5 5.7 33 392-424 85-117 (271)
10 3cn5_A Aquaporin; membrane pro 9.7 3.8E+02 0.013 26.0 5.7 34 391-424 130-163 (304)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=30.11 E-value=3.7e+02 Score=26.93 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=6.4
Q ss_pred HHhcCCCCCCC
Q 011811 140 LKLRHPTLDMP 150 (477)
Q Consensus 140 ~~~~~p~~~~p 150 (477)
+|+++|+.++|
T Consensus 392 ~r~~~~~~~~~ 402 (511)
T 4djk_A 392 LVLKHPDLKRT 402 (511)
T ss_dssp HHHHCCSCCCS
T ss_pred HHHhCCCCCCC
Confidence 45566666655
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=15.57 E-value=6.9e+02 Score=24.23 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 011811 411 TIAAFVGQHVVRKLIILLGRASL 433 (477)
Q Consensus 411 liGa~lG~~l~~~i~~~~~r~~l 433 (477)
.+|..+|+.+.-++.+++.|+-.
T Consensus 65 ~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 65 LIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHH
Confidence 34444444445555555566543
No 3
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=10.78 E-value=3.5e+02 Score=25.04 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 391 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 391 ~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
.....|+++|.......+..++|+++|+.+++.+
T Consensus 72 a~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 72 GLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999998887654
No 4
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=10.42 E-value=3.2e+02 Score=25.85 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.9
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 392 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 392 y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
....|+++|......++.-++|+++|+.+++-+
T Consensus 98 ~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 98 LTVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999887754
No 5
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=10.39 E-value=3.7e+02 Score=24.67 Aligned_cols=33 Identities=9% Similarity=0.401 Sum_probs=27.7
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 392 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 392 y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
....|+++|.......+..++|+++|+.+++.+
T Consensus 73 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 73 MVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345689999999999999999999999887654
No 6
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=10.26 E-value=4e+02 Score=25.03 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=29.9
Q ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011811 390 VEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 425 (477)
Q Consensus 390 i~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i~ 425 (477)
+.....|+++|.......+.-++|+++|+.+++-+-
T Consensus 75 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 110 (258)
T 3c02_A 75 IGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLY 110 (258)
T ss_dssp HHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345567899999999999999999999999887653
No 7
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=10.14 E-value=3.7e+02 Score=25.47 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=28.2
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 392 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 392 y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
....|+++|.......+.-++|+++|+.+++.+
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 77 LLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999999888765
No 8
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=10.06 E-value=3.7e+02 Score=25.71 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 391 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 391 ~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
.....|+++|..+....+.-++|+++|+.+++-+
T Consensus 118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688888888888888888888888877654
No 9
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=10.03 E-value=3.7e+02 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=28.3
Q ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 392 YYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 392 y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
....|+++|.......+.-++|+++|+.+++.+
T Consensus 85 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 85 LLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999999888755
No 10
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=9.66 E-value=3.8e+02 Score=25.99 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=29.1
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 391 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 391 ~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
.....|+++|..+...++.-++|+++|+.+++-+
T Consensus 130 a~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 163 (304)
T 3cn5_A 130 GLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999988765
Done!