Query 011811
Match_columns 477
No_of_seqs 204 out of 1924
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 15:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011811.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011811hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 67.4 43 0.0031 30.0 18.0 26 104-130 46-71 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 32.2 1.3E+02 0.0094 26.4 10.8 17 369-385 87-103 (447)
3 d1ymga1 f.19.1.1 (A:6-239) Aqu 13.7 1.2E+02 0.0085 25.9 5.7 35 391-425 69-103 (234)
4 d1fx8a_ f.19.1.1 (A:) Glycerol 8.8 2.6E+02 0.019 23.7 6.3 35 390-424 68-102 (254)
5 d1j4na_ f.19.1.1 (A:) Aquapori 8.0 2.4E+02 0.017 23.9 5.7 35 391-425 84-118 (249)
6 d1q90r_ f.23.12.1 (R:) ISP sub 8.0 1.5E+02 0.011 18.5 2.8 24 329-352 7-30 (39)
7 d1rc2a_ f.19.1.1 (A:) Aquapori 7.7 1.9E+02 0.014 24.1 4.8 33 393-425 71-103 (231)
8 d1cola_ f.1.1.1 (A:) Colicin A 5.0 3.9E+02 0.028 22.2 4.9 22 407-428 174-195 (197)
9 d1ymga1 f.19.1.1 (A:6-239) Aqu 4.1 4.7E+02 0.034 21.6 5.1 24 152-175 76-99 (234)
10 d2yvxa3 f.57.1.1 (A:276-448) M 3.8 6.5E+02 0.047 20.0 5.5 14 79-92 84-97 (173)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=67.39 E-value=43 Score=29.99 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=12.6
Q ss_pred chHHHHHHHhCCCchhhhHHHHHHHHH
Q 011811 104 IFVPMLSLIIGFDPKSATAISKCMIMG 130 (477)
Q Consensus 104 i~vP~L~~~~g~~~~~Avats~~~i~~ 130 (477)
+..|.+.- .|+++.+.--...+..++
T Consensus 46 ~~~p~~~~-~g~s~~~~g~~~s~~~~~ 71 (447)
T d1pw4a_ 46 LAMPYLVE-QGFSRGDLGFALSGISIA 71 (447)
T ss_dssp HHHHHTTS-STTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHH-hCcCHHHHHHHHHHHHHH
Confidence 34565544 466665554433333333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=32.24 E-value=1.3e+02 Score=26.45 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHHHHHH
Q 011811 369 PPQVSSATATFAMTFSS 385 (477)
Q Consensus 369 ~~~~A~ATs~~~~~f~s 385 (477)
..+.....+.+......
T Consensus 87 g~r~~~~~~~~~~~~~~ 103 (447)
T d1pw4a_ 87 NPRVFLPAGLILAAAVM 103 (447)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH
Confidence 35555544444443333
No 3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.71 E-value=1.2e+02 Score=25.90 Aligned_cols=35 Identities=11% Similarity=0.288 Sum_probs=30.0
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011811 391 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 425 (477)
Q Consensus 391 ~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i~ 425 (477)
.++..|+++|.......++.++|+++|+.+++.+.
T Consensus 69 a~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~ 103 (234)
T d1ymga1 69 AFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVT 103 (234)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhccCCChhheeeeeehHHHHHHHHHHHHHHHc
Confidence 35568899999999999999999999998887653
No 4
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=8.77 E-value=2.6e+02 Score=23.72 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=29.4
Q ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011811 390 VEYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKL 424 (477)
Q Consensus 390 i~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i 424 (477)
+..+..|++++.......+..++|+.+|+.+.+-+
T Consensus 68 la~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 68 IALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999888644
No 5
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.04 E-value=2.4e+02 Score=23.89 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011811 391 EYYLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 425 (477)
Q Consensus 391 ~y~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i~ 425 (477)
..+..|++++.......+..++|+.+|+.+.+.+-
T Consensus 84 a~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 84 GLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccccchhheeeeeeHHHHHHHHHHhhheeec
Confidence 34567899999999999999999999998877654
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.97 E-value=1.5e+02 Score=18.48 Aligned_cols=24 Identities=8% Similarity=-0.090 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcc
Q 011811 329 FRVFQLVSYCAFGVLAGIVGGLLG 352 (477)
Q Consensus 329 ~~~~~~~~~~~~G~~aG~isGllG 352 (477)
...|++.-+..+|.+++-..|+++
T Consensus 7 MgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 7 MNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccchhhhhhcc
Confidence 455667777788888888877766
No 7
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=7.66 E-value=1.9e+02 Score=24.07 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=29.1
Q ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011811 393 YLLKRFPVPYALYFVAVATIAAFVGQHVVRKLI 425 (477)
Q Consensus 393 ~~~G~i~~~~~l~l~~~sliGa~lG~~l~~~i~ 425 (477)
+..|++++.......+..++|+.+|+.+.+-+.
T Consensus 71 ~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~ 103 (231)
T d1rc2a_ 71 WAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA 103 (231)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999999887654
No 8
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=4.95 E-value=3.9e+02 Score=22.23 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 011811 407 VAVATIAAFVGQHVVRKLIILL 428 (477)
Q Consensus 407 ~~~sliGa~lG~~l~~~i~~~~ 428 (477)
++.+++|+++.-.++.++++..
T Consensus 174 li~~~v~alIdd~~~~~iN~~l 195 (197)
T d1cola_ 174 LLAAVVGALIDDKFADALNNEI 195 (197)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 5667777777777666666543
No 9
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.11 E-value=4.7e+02 Score=21.59 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 011811 152 IDYDLALLIQPMLMLGISIGVAFN 175 (477)
Q Consensus 152 Id~~l~l~l~~~~ilG~~iGa~l~ 175 (477)
++|+.+.....+=++|+.+|+.+.
T Consensus 76 i~~~~~~~Yi~aQ~lGa~~ga~l~ 99 (234)
T d1ymga1 76 MSLLRAICYMVAQLLGAVAGAAVL 99 (234)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhheeeeeehHHHHHHHHHHHH
Confidence 999999999999999999998755
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.84 E-value=6.5e+02 Score=20.00 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 011811 79 EIVLGTIIGFFGAA 92 (477)
Q Consensus 79 ~ili~~iiG~lag~ 92 (477)
...++++.|.+-|.
T Consensus 84 E~~vgll~G~~l~~ 97 (173)
T d2yvxa3 84 EMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554433
Done!