BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011812
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A
pdb|2EFC|C Chain C, Ara7-GdpATVPS9A
pdb|2EFD|A Chain A, Ara7ATVPS9A
pdb|2EFD|C Chain C, Ara7ATVPS9A
pdb|2EFE|A Chain A, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|C Chain C, Ara7-Gdpnh2ATVPS9A
pdb|4G01|A Chain A, Ara7-gdp-ca2+/vps9a
Length = 267
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 209/265 (78%), Positives = 236/265 (89%)
Query: 1 MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 3 MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 62
Query: 61 FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS ++V DE+L +K++LVQQF+
Sbjct: 63 FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 122
Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXEN 180
PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKV EN
Sbjct: 123 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 182
Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 183 APGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 242
Query: 241 DAQALSMEESEFERNMESAQALLSG 265
DA+++S++E+EFE+NMESA+A +SG
Sbjct: 243 DAKSISLDEAEFEKNMESARARISG 267
>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|C Chain C, Ara7-GdpATVPS9A(D185N)
Length = 267
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/265 (78%), Positives = 236/265 (89%)
Query: 1 MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 3 MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 62
Query: 61 FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS ++V DE+L +K++LVQQF+
Sbjct: 63 FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 122
Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXEN 180
PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKV EN
Sbjct: 123 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 182
Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
PGA+EFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 183 APGANEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 242
Query: 241 DAQALSMEESEFERNMESAQALLSG 265
DA+++S++E+EFE+NMESA+A +SG
Sbjct: 243 DAKSISLDEAEFEKNMESARARISG 267
>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 274
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 21/222 (9%)
Query: 44 ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFAS-IPDDV 102
E S Q F N+ + E ++ + +EKY+MT+L+ VF DD
Sbjct: 53 EEQSECAQDFYHNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDE 109
Query: 103 KTDEQLSEKIALV-----QQFVRPENLDIKASFQNETSWLLAQKELQKINM--YKAPRDK 155
K D + ++I + Q P N DI E S ++ + I M + PRDK
Sbjct: 110 KKDLAIQKRIRALRWVTPQMLCVPVNEDIP-----EVSDMVVKAITDIIEMDSKRVPRDK 164
Query: 156 LVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR 215
L CI C K P AD+FLP LIY+ +K NPP+L SN+ YI R+
Sbjct: 165 LACITKCSK----HIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCN 220
Query: 216 QSRLV-GEAAYFFTNMLSAESFISNIDAQALSMEESEFERNM 256
SRL+ GE Y+FTN+ A +FI +DAQ+L++ + +F+R M
Sbjct: 221 PSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 262
>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5
Length = 273
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%)
Query: 73 EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALV-----QQFVRPENLDI 126
E ++ + +EKY+ T+L+ VF DD K D + ++I + Q P N DI
Sbjct: 81 ERVEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQXLCVPVNEDI 140
Query: 127 KASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADE 186
+ + A ++ + + + PRDKL CI C K P AD+
Sbjct: 141 P---EVSDXVVKAITDIIEXDSKRVPRDKLACITKCSK----HIFNAIKITKNEPASADD 193
Query: 187 FLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL-VGEAAYFFTNMLSAESFISNIDAQAL 245
FLP LIY+ +K NPP+L SN+ YI R+ SRL GE Y+FTN+ A +FI +DAQ+L
Sbjct: 194 FLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNLCCAVAFIEKLDAQSL 253
Query: 246 SMEESEFER 254
++ + +F+R
Sbjct: 254 NLSQEDFDR 262
>pdb|2X6F|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With 3-Methyladenine
pdb|2X6F|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With 3-Methyladenine
pdb|2X6H|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34
pdb|2X6H|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34
pdb|2X6I|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-kinase Vps34 In Complex With Pik-90
pdb|2X6I|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-kinase Vps34 In Complex With Pik-90
pdb|2X6J|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pik-93
pdb|2X6J|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pik-93
pdb|2X6K|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pi-103
pdb|2X6K|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pi-103
Length = 696
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 100 DDVKTDEQLSEKIALVQQFVRPENLDIKAS 129
DD++ D+ + + I L+ + +R ENLD+K +
Sbjct: 448 DDLRQDQLILQMITLMDKLLRRENLDLKLT 477
>pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
pdb|3LS8|B Chain B, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
Length = 614
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 100 DDVKTDEQLSEKIALVQQFVRPENLDIKAS 129
DD++ D+ + + I+L+ + +R ENLD+K +
Sbjct: 374 DDLRQDQLILQIISLMDKLLRKENLDLKLT 403
>pdb|3IHY|A Chain A, Human Pik3c3 Crystal Structure
pdb|3IHY|B Chain B, Human Pik3c3 Crystal Structure
pdb|3IHY|C Chain C, Human Pik3c3 Crystal Structure
pdb|3IHY|D Chain D, Human Pik3c3 Crystal Structure
pdb|3IHY|E Chain E, Human Pik3c3 Crystal Structure
Length = 600
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 100 DDVKTDEQLSEKIALVQQFVRPENLDIKAS 129
DD++ D+ + + I+L+ + +R ENLD+K +
Sbjct: 360 DDLRQDQLILQIISLMDKLLRKENLDLKLT 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,847,541
Number of Sequences: 62578
Number of extensions: 419672
Number of successful extensions: 789
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 8
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)