BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011812
(477 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis
thaliana GN=VPS9A PE=1 SV=1
Length = 520
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/455 (64%), Positives = 347/455 (76%), Gaps = 6/455 (1%)
Query: 1 MENADVFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAA 60
MEN DVFLGLHDFLERMR+PSA DFVKSIKSFIVSFSNNAPDPE+D A VQ F + MEAA
Sbjct: 1 MENTDVFLGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAA 60
Query: 61 FRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVR 120
FRAHPLW+GCSEEELDSAG+GLEKYVMTKLFTRVFAS ++V DE+L +K++LVQQF+
Sbjct: 61 FRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFIS 120
Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
PENLDI+ +FQNE+SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA NEN
Sbjct: 121 PENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEN 180
Query: 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 240
PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR+S+LVGEAAYFFTN+LSAESFISNI
Sbjct: 181 APGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNI 240
Query: 241 DAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNST 300
DA+++S++E+EFE+NMESA+A +SGL D + Q ++ K Q +N
Sbjct: 241 DAKSISLDEAEFEKNMESARARISGL----DSQTYQTGHGSAPPPRDESTLQKTQSLNPK 296
Query: 301 KEKEHLTPVRSSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYP 360
+E S ++ + P+ K S+S+LENKGAT LLK+ + S+VFQEYP
Sbjct: 297 RENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGAT-LLKDTEPSKVFQEYP 355
Query: 361 YLFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKA 420
Y+FA GDL I DVE LLN+YKQLVFKYVCL+KGLG S PSS P Q T K
Sbjct: 356 YIFASAGDLRIGDVEGLLNSYKQLVFKYVCLTKGLGDGTSLAPSSS-PLQASSGFNTSKE 414
Query: 421 PEEHKRVELNDESEKDTSETNDSSNQVLNSNEEKV 455
E+H+R + + K+T + D + L+ E V
Sbjct: 415 SEDHRRSSSDVQMTKETDRSVDDLIRALHGEGEDV 449
>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps901 PE=1 SV=3
Length = 572
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 147/265 (55%), Gaps = 18/265 (6%)
Query: 7 FLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPL 66
H FLE++R SA K +KSF+ F+ ++ FL + +
Sbjct: 112 IFDFHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEP 171
Query: 67 WAGCSEEELDSAGEGLEKYVMTKLFTRVFA------SIP------DDVKTDEQLSEKIAL 114
WA S+ E+D+A EG+EK V+ +L+T +F+ IP DDV+ D LSEK+ L
Sbjct: 172 WASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMEL 231
Query: 115 VQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNAS 174
Q ++ ENLDIK + + LA EL++IN Y APRDK++C+LNCCKVI + L N
Sbjct: 232 FQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLRNVV 290
Query: 175 IALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAE 234
AD F+P+LI+V ++A P L SN+ YIQR+R +L GE Y+ + ++ A
Sbjct: 291 -----KEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAM 345
Query: 235 SFISNIDAQALSMEESEFERNMESA 259
SFI +D +L++ E EF +E +
Sbjct: 346 SFIETLDCSSLTITEEEFNAQIEKS 370
>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos
taurus GN=GAPVD1 PE=2 SV=1
Length = 1413
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 117/219 (53%), Gaps = 10/219 (4%)
Query: 27 KSIKSFIVSFSN-NAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKY 85
K I+ FI F A D + +A V+ FL + A +W SEE+L A +E+
Sbjct: 1198 KKIREFIQDFQKLTAADDK--TAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERS 1255
Query: 86 VMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKE 142
VM ++F F D D+ D+ L E I + + V + L I + E W AQ E
Sbjct: 1256 VMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLKEAPWPSAQSE 1315
Query: 143 LQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQ 202
++ I+ YK PRDK+ CIL C I NLL S+A ++ PGAD+F+PVL++V IKANPP
Sbjct: 1316 IRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPC 1372
Query: 203 LHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
L S + YI + S L GE +Y++ +A FI ID
Sbjct: 1373 LLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1410
>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1
OS=Homo sapiens GN=GAPVD1 PE=1 SV=2
Length = 1478
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 117/219 (53%), Gaps = 10/219 (4%)
Query: 27 KSIKSFIVSFSN-NAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKY 85
K I+ FI F A D + +A V+ FL + A +W SEE+L A +E+
Sbjct: 1263 KKIREFIQDFQKLTAADDK--TAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERS 1320
Query: 86 VMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKE 142
VM ++F F D D+ D+ L E I + + V + L I + E W AQ E
Sbjct: 1321 VMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSE 1380
Query: 143 LQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQ 202
++ I+ YK PRDK+ CIL C I NLL S+A ++ PGAD+F+PVL++V IKANPP
Sbjct: 1381 IRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPC 1437
Query: 203 LHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
L S + YI + S L GE +Y++ +A FI ID
Sbjct: 1438 LLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1475
>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus
musculus GN=Gapvd1 PE=1 SV=2
Length = 1458
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 116/219 (52%), Gaps = 10/219 (4%)
Query: 27 KSIKSFIVSFSN-NAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKY 85
K I+ FI F A D + +A V+ FL + +W SEE+L A +E+
Sbjct: 1243 KKIREFIQDFQKLTAADDK--TAQVEDFLQFLYGVMAQDVIWQNASEEQLQDAQLAIERS 1300
Query: 86 VMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKE 142
VM ++F F D D+ D+ L E I + + V + L I + E W AQ E
Sbjct: 1301 VMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSE 1360
Query: 143 LQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQ 202
++ I+ YK PRDK+ CIL C I NLL S+A ++ PGAD+F+PVL++V IKANPP
Sbjct: 1361 IRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPC 1417
Query: 203 LHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
L S + YI + S L GE +Y++ +A FI ID
Sbjct: 1418 LLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFIKTID 1455
>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1
OS=Xenopus laevis GN=gapvd1 PE=2 SV=1
Length = 1452
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 47 SAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTD 105
+A V+ FL ++ A +W SEE+L A +E+ +M ++F F D D+ D
Sbjct: 1256 TAQVEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRD 1315
Query: 106 EQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCC 163
+ L E I + + V + L I + E W AQ E++ I+ YK PRDK+ CIL C
Sbjct: 1316 QVLHEHIKRLSKVVTANHRALQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMC 1375
Query: 164 KVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEA 223
I NLL S+A + PGAD+F+PVL++V IKANP L S + YI + +RL+GE
Sbjct: 1376 STIMNLL---SLANEYSVPGADDFVPVLVFVLIKANPTYLLSTVQYISSF-YSNRLIGEE 1431
Query: 224 AYFFTNMLSAESFISNID 241
+Y++ +A FI ID
Sbjct: 1432 SYWWMQFTAAVEFIKTID 1449
>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1
SV=2
Length = 451
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 140/274 (51%), Gaps = 28/274 (10%)
Query: 7 FLGLHDFLERMRQPSAADFVKSIKSFIVSF--SNNAPDPERDSAAVQSFLANMEAAFRAH 64
F F+++++ P A VK KSF+ +F + + F + F +
Sbjct: 60 FYDFQIFIKQLQTPGADPLVKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLY 119
Query: 65 PLWAGCSEEELDSAGEGLEKYVMTKLFTRVFAS---------IPD----DVKTDEQLSEK 111
+ ++ +A EG+EK +M KL++R F+ + D D+ D+ L EK
Sbjct: 120 EPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEK 179
Query: 112 IALVQQFVRPENLDIKASFQN---ETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINN 168
I + F+ P LDI + N LA KEL KIN +K+PRDK+VC+LN KVI
Sbjct: 180 IRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFG 238
Query: 169 LLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFT 228
LL + + N GAD F+PVLIY +K L SN+ YI+R+R + GE Y+ +
Sbjct: 239 LLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLS 294
Query: 229 NMLSAESFISNIDAQALSMEESE-----FERNME 257
++ +A +FI N+ ++L++E+ E ++RN +
Sbjct: 295 SLQAALNFIMNLTERSLTIEDHEDFEEAYQRNFK 328
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1
Length = 492
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 13/218 (5%)
Query: 44 ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDV 102
E S Q F N+ + E ++ + +EKY+MT+L+ VF DD
Sbjct: 177 EEQSECTQDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDE 233
Query: 103 KTDEQLSEKIALVQQFVRPENLDIKASFQ-NETSWLLAQKELQKINM--YKAPRDKLVCI 159
K D + ++I + +V P+ L + + + E S ++ + I M + PRDKL CI
Sbjct: 234 KKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACI 292
Query: 160 LNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL 219
C K I N + I NE P AD+FLP LIY+ +K NPP+L SN+ YI R+ SRL
Sbjct: 293 TKCSKHIFNAI---KITKNE-PASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRL 348
Query: 220 V-GEAAYFFTNMLSAESFISNIDAQALSMEESEFERNM 256
+ GE Y+FTN+ A +FI +DAQ+L++ + +F+R M
Sbjct: 349 MTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 386
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2
Length = 708
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 73 EELDSAGEGLEKYVMTKLFTRVFAS-IPDDVKTDEQLSEKIALV-----QQFVRPENLDI 126
E ++ + +EKY+MT+L+ VF DD K D + ++I + Q P N DI
Sbjct: 419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDI 478
Query: 127 KASFQNETSWLLAQKELQKINM--YKAPRDKLVCILNCCKVINNLLLNASIALNENPPGA 184
E S ++ + I M + PRDKL CI C K I N + I NE P A
Sbjct: 479 P-----EVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKNE-PASA 529
Query: 185 DEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLV-GEAAYFFTNMLSAESFISNIDAQ 243
D+FLP LIY+ +K NPP+L SN+ YI R+ SRL+ GE Y+FTN+ A +FI +DAQ
Sbjct: 530 DDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQ 589
Query: 244 ALSMEESEFERNM 256
+L++ + +F+R M
Sbjct: 590 SLNLSQEDFDRYM 602
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1
Length = 491
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%), Gaps = 13/218 (5%)
Query: 44 ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFA-SIPDDV 102
E S Q F N+ + E+++ + +EK++MT+L+ VF DD
Sbjct: 176 EEQSECTQDFYQNVAERMQTR---GKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDE 232
Query: 103 KTDEQLSEKIALVQQFVRPENLDIKASFQ-NETSWLLAQKELQKINM--YKAPRDKLVCI 159
K D + ++I + +V P+ L + + + E S ++ + I M + PRDKL CI
Sbjct: 233 KKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACI 291
Query: 160 LNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRL 219
C K I N + I NE P AD+FLP LIY+ +K NPP+L SN+ YI R+ SRL
Sbjct: 292 TRCSKHIFNAI---KITKNE-PASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRL 347
Query: 220 V-GEAAYFFTNMLSAESFISNIDAQALSMEESEFERNM 256
+ GE Y+FTN+ A +FI +DAQ+L++ + +F+R M
Sbjct: 348 MTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 385
>sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
melanogaster GN=CG1657 PE=1 SV=2
Length = 1712
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 8/173 (4%)
Query: 72 EEELDSAGEGLEKYVMTKLFTRV-FASIPDDVKTDEQLSEKIALVQQFVRPEN--LDIKA 128
E ++D+A +E+ ++ +++ +V F + DV DE LS I +Q+FV P + L I
Sbjct: 1542 EWQVDAARVAIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQRFVHPAHPALCIAQ 1601
Query: 129 SFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFL 188
+ E W AQ++L + YK PR+KL CI+NC I +LL +S + P AD+ L
Sbjct: 1602 EYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSSGRV----PAADDLL 1657
Query: 189 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
PVLIYV I ANPP L S + YI + + +L GE +++T S FI +D
Sbjct: 1658 PVLIYVVIMANPPYLLSTVEYISCFLGK-KLEGEDEFYWTLFGSVVKFIKTMD 1709
>sp|Q29HW3|RME6_DROPS Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA14078 PE=3 SV=2
Length = 1774
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 74 ELDSAGEGLEKYVMTKLFTRV-FASIPDDVKTDEQLSEKIALVQQFVRPEN--LDIKASF 130
++D+A E +E+ ++ ++ +V F + DV D LS I +Q+FV P + L I +
Sbjct: 1606 QVDAAREAIERMLLELMYQQVMFPNEDADVSRDTVLSAHIGKLQRFVHPAHPALCIAQEY 1665
Query: 131 QNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPV 190
E W AQ++L + YK PR+KL CI+NC I +LL + + P AD+ LPV
Sbjct: 1666 LGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSCGRV----PAADDLLPV 1721
Query: 191 LIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
LIYV I ANPP L S + YI + + +L GE +++T S FI +D
Sbjct: 1722 LIYVVIMANPPYLLSTVEYISCFLGR-KLDGENEFYWTLFGSVVKFIKTMD 1771
>sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans
GN=rme-6 PE=1 SV=2
Length = 1093
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 10/195 (5%)
Query: 53 FLANMEAAFRAHPL----WAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQ 107
FL N+ R + W ++ + A +E+YV+ ++ F D D D+
Sbjct: 901 FLKNLLTFLRDRLMQNVDWNFATDTMMSRAMTTIERYVIFAVYDNAFYPNRDADHHRDKL 960
Query: 108 LSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKV 165
L IA V V P N L I E W AQ EL +++Y +DKL C++ CC V
Sbjct: 961 LRGTIAKVSDVVTPVNDFLKIPEHLHGEAPWPSAQAELSMLDIYVTAQDKLNCVVRCCDV 1020
Query: 166 INNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAY 225
INNL+ +++ AD+ PVL++V IKANP L SN+ +++ + G AY
Sbjct: 1021 INNLV---ALSSKNAVASADDLTPVLVFVIIKANPRALLSNVQFVETFAGDRIESGRDAY 1077
Query: 226 FFTNMLSAESFISNI 240
++ N SA +I I
Sbjct: 1078 YWVNFKSAVEYIKTI 1092
>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
GN=rme-6 PE=3 SV=1
Length = 1104
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 14/197 (7%)
Query: 53 FLANMEAAFRAHPL----WAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD---DVKTD 105
FL N+ R + W +E + A +E++VM ++ F P+ D K D
Sbjct: 912 FLQNLLTYLRERLMQNYDWNFATESMIARAMTTMERFVMFAVYEIAFW--PNREMDQKKD 969
Query: 106 EQLSEKIALVQQFVRP--ENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCC 163
+ L I V P E L I E W AQ EL ++ Y ++KL C++ CC
Sbjct: 970 KLLQSVIGKASSSVTPVHEALKIPEHLLGEAPWPSAQAELSMLDNYVTAQEKLNCLVRCC 1029
Query: 164 KVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEA 223
VINNL+ +++ AD+ PVL++V IKANP L SNL +I+ + G
Sbjct: 1030 DVINNLV---ALSSKNAVASADDLTPVLVFVIIKANPRSLLSNLQFIETFAGDQIESGRD 1086
Query: 224 AYFFTNMLSAESFISNI 240
AY++ N SA +I I
Sbjct: 1087 AYYWVNFKSAVEYIKTI 1103
>sp|Q9D684|RIN2_MOUSE Ras and Rab interactor 2 OS=Mus musculus GN=Rin2 PE=1 SV=3
Length = 903
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 30/238 (12%)
Query: 21 SAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGE 80
S+ D +++I+ F+ N ++S + E+++D E
Sbjct: 558 SSTDMLQTIRQFMTQVKNYLSQSSELDPPIESLIP----------------EDQIDVVLE 601
Query: 81 -GLEKYVMTKLFTRVFASIPDDVKTD---EQLSEKIALVQQFVRPENLDIKASFQNETSW 136
+ K ++ L V A + D D +QL E + LV+Q P+ L + A +
Sbjct: 602 KAMHKCILKPLKGHVEAMLKDFHTADGSWKQLKENLQLVRQ-RNPQELGVFAPTPDLME- 659
Query: 137 LLAQKELQKINMYK--APRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYV 194
L + +L+ + M K +P K++ +L CK+I ++ N S + GAD+FLPVL YV
Sbjct: 660 -LEKIKLKFMTMQKMYSPEKKVMLLLRVCKLIYTVMENNSGRMY----GADDFLPVLTYV 714
Query: 195 TIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI-DAQALSMEESE 251
+ + +L + + Y+ S L GE Y+ T+ A S I N + QA + SE
Sbjct: 715 IAQCDMLELDTEIEYMMELLDPSLLHGEGGYYLTSAYGALSLIKNFQEEQAARLLSSE 772
>sp|Q8WYP3|RIN2_HUMAN Ras and Rab interactor 2 OS=Homo sapiens GN=RIN2 PE=1 SV=1
Length = 895
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 26/236 (11%)
Query: 21 SAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGE 80
S+ D +++I+ F+ N ++S + E+++D E
Sbjct: 549 SSTDMLQTIRQFMTQVKNYLSQSSELDPPIESLIP----------------EDQIDVVLE 592
Query: 81 -GLEKYVMTKLFTRVFASIPDDVKTD---EQLSEKIALVQQFVRPENLDIKASFQNETSW 136
+ K ++ L V A + D D +QL E + LV+Q P+ L + A +
Sbjct: 593 KAMHKCILKPLKGHVEAMLKDFHMADGSWKQLKENLQLVRQ-RNPQELGVFAPTPDFVDV 651
Query: 137 LLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTI 196
+ + + +P K++ +L CK+I ++ N S + GAD+FLPVL YV
Sbjct: 652 EKIKVKFMTMQKMYSPEKKVMLLLRVCKLIYTVMENNSGRMY----GADDFLPVLTYVIA 707
Query: 197 KANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI-DAQALSMEESE 251
+ + +L + + Y+ S L GE Y+ T+ A S I N + QA + SE
Sbjct: 708 QCDMLELDTEIEYMMELLDPSLLHGEGGYYLTSAYGALSLIKNFQEEQAARLLSSE 763
>sp|P59729|RIN3_MOUSE Ras and Rab interactor 3 OS=Mus musculus GN=Rin3 PE=2 SV=2
Length = 980
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 10/107 (9%)
Query: 140 QKELQKI-NMYKA--PRDKLVCILNCCKVINNLLLNASIALNE--NPPGADEFLPVLIYV 194
+K LQK+ +M+KA P K+ +L CK+I + S+AL P GAD+FLPVL+YV
Sbjct: 737 EKILQKLTSMHKAYSPGKKISILLKTCKLIYD-----SMALGNPGKPYGADDFLPVLMYV 791
Query: 195 TIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
++N ++ N+ Y+ + +GE +Y+ T A I N D
Sbjct: 792 LARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKNYD 838
>sp|Q8TB24|RIN3_HUMAN Ras and Rab interactor 3 OS=Homo sapiens GN=RIN3 PE=1 SV=4
Length = 985
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 138 LAQKELQKI-NMYKA--PRDKLVCILNCCKVINNLLLNASIALNE--NPPGADEFLPVLI 192
+ +K LQK +M+KA P K+ +L CK+I + S+AL P GAD+FLPVL+
Sbjct: 738 MMEKILQKFTSMHKAYSPEKKISILLKTCKLIYD-----SMALGNPGKPYGADDFLPVLM 792
Query: 193 YVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 241
YV ++N ++ N+ Y+ + +GE +Y+ T A I + D
Sbjct: 793 YVLARSNLTEMLLNVEYMMELMDPALQLGEGSYYLTTTYGALEHIKSYD 841
>sp|Q8C190|VP9D1_MOUSE VPS9 domain-containing protein 1 OS=Mus musculus GN=Vps9d1 PE=2
SV=1
Length = 649
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 136 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNL---LLNASIALNEN---PP----GAD 185
+ A +EL + + P+ KL CI+ +VI A A E PP GAD
Sbjct: 528 YCTAAQELGLLVLESCPQKKLECIVRTLRVICICAEDYCRAQEARPEGESQPPAAAIGAD 587
Query: 186 EFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFI 237
+ LP+L +V +++ PQL S ++ + + L+GE Y T++ SA S++
Sbjct: 588 DLLPILSFVVLRSGLPQLVSECAALEEFTHEGYLIGEEGYCLTSLQSALSYV 639
>sp|Q9Y2B5|VP9D1_HUMAN VPS9 domain-containing protein 1 OS=Homo sapiens GN=VPS9D1 PE=2
SV=2
Length = 631
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 121 PENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN 180
P+N + K + + A +EL + + P+ KL CI+ ++I +
Sbjct: 496 PQNPEAKGA--TGYPYCAAAQELGLLVLESCPQKKLECIVRTLRIICVCAEDYCPTPEAT 553
Query: 181 P-----------PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTN 229
P GAD+ LP+L +V +++ PQL S ++ + + L+GE Y T+
Sbjct: 554 PQAGPPPIAAAAIGADDLLPILSFVVLRSGLPQLVSECAALEEFIHEGYLIGEEGYCLTS 613
Query: 230 MLSAESFI 237
+ SA S++
Sbjct: 614 LQSALSYV 621
>sp|Q96NW4|ANR27_HUMAN Ankyrin repeat domain-containing protein 27 OS=Homo sapiens
GN=ANKRD27 PE=1 SV=2
Length = 1050
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 109/236 (46%), Gaps = 7/236 (2%)
Query: 72 EEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 131
E +++ + +E YV +++ +F + +++ KI Q ++ +++ +K F
Sbjct: 202 EAQMNLMKQAVEIYVHHEIYNLIFKYVGTMEASEDAAFNKITRSLQDLQQKDIGVKPEFS 261
Query: 132 NETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVL 191
A++EL ++N +P+ KLVC+ KV+ + + S +N AD+ L VL
Sbjct: 262 FNIPR--AKRELAQLNKCTSPQQKLVCLR---KVVQLITQSPSQRVNLETMCADDLLSVL 316
Query: 192 IYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESE 251
+Y+ +K P +NL YI+ +R S E Y T+ +A +I A E
Sbjct: 317 LYLLVKTEIPNWMANLSYIKNFRFSSLAKDELGYCLTSFEAAIEYIRQGSLSAKPPESEG 376
Query: 252 FERNMESAQ--ALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNSTKEKEH 305
F + Q +LLS +++ ++ S Q VE+L+ + ++ ++ H
Sbjct: 377 FGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLLSQEDHDKDTVQKMCH 432
>sp|Q5REW9|ANR27_PONAB Ankyrin repeat domain-containing protein 27 OS=Pongo abelii
GN=ANKRD27 PE=2 SV=1
Length = 1050
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 7/221 (3%)
Query: 72 EEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 131
E +++ + +E YV +++ +F + +++ KI Q ++ +++ +K F
Sbjct: 202 EAQMNLMKQAVEIYVHHEIYDLIFKYVGTMEASEDAAFNKITRSLQDLQQKDIGVKPEFS 261
Query: 132 NETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVL 191
A++EL ++N +P+ KLVC+ KV+ + + S +N AD+ L VL
Sbjct: 262 FNIPR--AKRELAQLNKCTSPQQKLVCLR---KVVQLITQSPSQRVNLETMCADDLLSVL 316
Query: 192 IYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESE 251
+Y+ +K P +NL YI+ +R S E Y T+ +A +I A E
Sbjct: 317 LYLLVKTEIPNWMANLSYIKNFRFSSSAKDELGYCLTSFEAAIEYIRQGSLSAKPPESEG 376
Query: 252 FERN--MESAQALLSGLSADMDGLSNQNDESEGQISVEQLI 290
F ++ +LLS +++ ++ S Q VE+L+
Sbjct: 377 FGDRLFLKQRMSLLSQMTSSPTDCLFKHIASGNQKEVERLL 417
>sp|Q3UMR0|ANR27_MOUSE Ankyrin repeat domain-containing protein 27 OS=Mus musculus
GN=Ankrd27 PE=1 SV=2
Length = 1048
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Query: 72 EEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLDIKASFQ 131
E +++ + +E YV ++ +F + +++ KI Q ++ +++ +K F
Sbjct: 202 EAQMNLMKQAVEMYVHHDIYDLIFKYVGTMEASEDAAFNKITRSLQDLQQKDIGVKPEFS 261
Query: 132 NETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVL 191
A++EL ++N +P+ KL+C+ KV+ + + S +N AD+ L VL
Sbjct: 262 FNIPR--AKRELGQLNKCTSPQQKLLCLR---KVVQLMTQSPSQRVNLETMCADDLLSVL 316
Query: 192 IYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFI 237
+Y+ +K P +NL YI+ +R S E Y T++ +A +I
Sbjct: 317 LYLLVKTEIPNWMANLSYIKNFRFSSSAKDELGYCLTSVEAAIEYI 362
>sp|P97680|RIN1_RAT Ras and Rab interactor 1 OS=Rattus norvegicus GN=Rin1 PE=2 SV=2
Length = 774
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 140 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKAN 199
QK LQ + Y +P ++ +L CK++ L + EN GADEFLP+L V + +
Sbjct: 497 QKLLQLLRAY-SPSAQIKWLLQACKLLYTALKTQA---GENA-GADEFLPLLSLVLAQCD 551
Query: 200 PPQLHSNLLYIQRYRRQSRLVGEAAYFFT 228
P L Y+ + L GE Y+ T
Sbjct: 552 LPDLLLEAEYMSELLEPTLLTGEGGYYLT 580
>sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus GN=Rin1 PE=1 SV=1
Length = 763
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 140 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKAN 199
QK LQ + Y +P ++ +L CK++ L + + EN GADEFLP+L V + +
Sbjct: 486 QKLLQLLRAY-SPSAQVKWLLQACKLLYTALKSQA---GENA-GADEFLPLLSLVLAQCD 540
Query: 200 PPQLHSNLLYIQRYRRQSRLVGEAAYFFT 228
P L Y+ + L GE Y+ T
Sbjct: 541 LPDLLLEAEYMSELLEPTLLTGEGGYYLT 569
>sp|Q6ZS11|RINL_HUMAN Ras and Rab interactor-like protein OS=Homo sapiens GN=RINL PE=2
SV=1
Length = 452
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 140 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKAN 199
+ L ++ APR K+ +L C+ + L N++P GAD FLP L I +
Sbjct: 297 HERLAHLHAACAPRRKVALLLEVCRDVYAGLARGE---NQDPLGADAFLPALTEELIWS- 352
Query: 200 PPQLHSNLL---YIQRYRRQSRLVGEAAYFFTNMLSAESFISN 239
P + L ++ L GEA Y+ T A I++
Sbjct: 353 -PDIGDTQLDVEFLMELLDPDELRGEAGYYLTTWFGALHHIAH 394
>sp|Q13671|RIN1_HUMAN Ras and Rab interactor 1 OS=Homo sapiens GN=RIN1 PE=1 SV=4
Length = 783
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 140 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNEN-PPGADEFLPVLIYVTIKA 198
QK LQ + Y +P ++ +L CK LL ++ E GADEFLP+L V
Sbjct: 497 QKLLQLLRTY-SPSAQVKRLLQACK-----LLYMALRTQEGEGAGADEFLPLLSLVLAHC 550
Query: 199 NPPQLHSNLLYIQRYRRQSRLVGEAAYFFT 228
+ P+L Y+ S L GE Y+ T
Sbjct: 551 DLPELLLEAEYMSELLEPSLLTGEGGYYLT 580
>sp|O94388|VPS92_SCHPO Vacuolar protein sorting-associated protein 9b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps902 PE=1 SV=1
Length = 402
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 18/169 (10%)
Query: 76 DSAGEGLEKYVMTKLFTRVFA-SIPDDVKTDEQLSEKIA------LVQQFVRPENLDIKA 128
D + +E V L+ R+F S D D+ L + IA L+ P++ +
Sbjct: 112 DEWMDQIEDIVCEYLYDRIFCLSTSTDAAKDDLLKKFIASEEKKELINCIPIPDDEKLTN 171
Query: 129 SFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFL 188
+ A E PR K+ N +N+ +LNAS L + AD L
Sbjct: 172 RLHEVSEAFFALDEQH------TPRSKI----NTFMTVNSSILNAS-QLPQEELNADSLL 220
Query: 189 PVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFI 237
+ IY + L S+L ++ R+R L GE Y T +A +FI
Sbjct: 221 NLTIYCILCYPGFHLISHLNFVLRFRNADFLSGEQRYCLTTFEAALTFI 269
>sp|Q8MQW8|SPRI_DROME Protein sprint OS=Drosophila melanogaster GN=spri PE=2 SV=2
Length = 1790
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 136 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVT 195
W L + EL P DKL L + + + +A+ GAD+FLPVL+YV
Sbjct: 1576 WRLQEAEL--------PLDKLELFL----CVISTVFDATGCPRGQQLGADDFLPVLVYVV 1623
Query: 196 IKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSA 233
K ++ + + L GE Y+ T + SA
Sbjct: 1624 AKCGFVGAEIEAEFMWGLLQPTLLNGEPGYYLTALCSA 1661
>sp|Q8NMZ9|TIG_CORGL Trigger factor OS=Corynebacterium glutamicum (strain ATCC 13032 /
DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=tig
PE=3 SV=1
Length = 449
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 318 KKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYL---FAQVG------- 367
K + AK E + L+ E+KG + E + +E P L FAQ+
Sbjct: 201 KALIGAKKDETVEFTSELANGEHKGKEAQISVEITATKQRELPELDDEFAQLASEFDTIE 260
Query: 368 ---DLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEH 424
+ T+SDVE N + + L+ LG A +LP S++ Q Q+ + H
Sbjct: 261 ELRESTVSDVEAKQKNEQAAAIRDEVLAAALGEADFALPQSIVDEQAHSQLHQLLGELAH 320
Query: 425 KRVELND--ESEKDTSETNDSSNQVLNSNEEKVESQL 459
LN E++ T E D N + E+ V +QL
Sbjct: 321 DDAALNSLLEAQGTTREEFDKKN--VEDAEKAVRTQL 355
>sp|A4QGE8|TIG_CORGB Trigger factor OS=Corynebacterium glutamicum (strain R) GN=tig PE=3
SV=1
Length = 449
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 318 KKVTFAKDQEPITKVPSLSELENKGATMLLKEEKASQVFQEYPYL---FAQVG------- 367
K + AK E + L+ E+KG + E + +E P L FAQ+
Sbjct: 201 KALIGAKKDETVEFTSELANGEHKGKEAQISVEITATKQRELPELDDEFAQLASEFDTIE 260
Query: 368 ---DLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEH 424
+ T+SDVE N + + L+ LG A +LP S++ Q Q+ + H
Sbjct: 261 ELRESTVSDVEAKQKNEQAAAIRDEVLAAALGEADFALPQSIVDEQAHSQLHQLLGELAH 320
Query: 425 KRVELND--ESEKDTSETNDSSNQVLNSNEEKVESQL 459
LN E++ T E D N + E+ V +QL
Sbjct: 321 DDAALNSLLEAQGTTREEFDKKN--VEDAEKAVRTQL 355
>sp|Q02866|MUK1_YEAST Protein MUK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MUK1 PE=1 SV=1
Length = 612
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 163 CKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGE 222
C+ I LL I D++L +LIY I P + N +I+ +R + +LV
Sbjct: 331 CEKIKALLKLHEIMTYSQEMSNDDYLSLLIYYIITIVPRDIFLNAEFIRLFRYKKKLVET 390
Query: 223 AAYFFTNMLSAESFISNIDAQALSME 248
++ TN+ +A F+ + S E
Sbjct: 391 ESFALTNLEAALVFVEGLTKNDFSNE 416
>sp|Q86TU6|CN070_HUMAN Putative uncharacterized protein encoded by LINC00523 OS=Homo
sapiens GN=LINC00523 PE=5 SV=1
Length = 105
Score = 34.7 bits (78), Expect = 1.6, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 245 LSMEESEFERNMESAQALLSGLSAD--MDGLSNQNDESEGQISVEQLIQSKHQGVNSTKE 302
LS+E+ + NME+++ +L + +D +DG +++E EG+ S+ + ++SK + K+
Sbjct: 22 LSVEKRRWRINMETSKIILEKMQSDDVLDGNRERSNEREGRDSLSEKLKSKQ----NLKD 77
Query: 303 KEHLTPVRSSESKSVKKVTFAK 324
+E L +++ +S V+ AK
Sbjct: 78 EEKLRYIKTGKSIQVEGTVRAK 99
>sp|A5GHU5|MUTS_SYNPW DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
WH7803) GN=mutS PE=3 SV=1
Length = 910
Score = 32.3 bits (72), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 23/138 (16%)
Query: 240 IDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQISVEQLIQSKHQGVNS 299
IDA LS+ E + G+ +DGL NQ D+ + ++ ++ ++ + G N+
Sbjct: 523 IDAPPLSLSEGGL---------IHDGVDPLLDGLRNQLDDQDAWLAEQERLERERSGNNN 573
Query: 300 TKEKEHLT-----PVRSSESKSV-----KKVTFAKDQEPITKVPSLSELENKGATMLLKE 349
+ + H T V +++ SV ++ T A ++ IT P L E E G L+
Sbjct: 574 LRLQYHRTFGYFLAVSKAKASSVPEHWIRRQTLANEERFIT--PELKERE--GRIFQLRA 629
Query: 350 EKASQVFQEYPYLFAQVG 367
+ ++ Y L QVG
Sbjct: 630 RACQREYELYCSLREQVG 647
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,199,196
Number of Sequences: 539616
Number of extensions: 6698212
Number of successful extensions: 27886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 26953
Number of HSP's gapped (non-prelim): 917
length of query: 477
length of database: 191,569,459
effective HSP length: 121
effective length of query: 356
effective length of database: 126,275,923
effective search space: 44954228588
effective search space used: 44954228588
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)