Query 011812
Match_columns 477
No_of_seqs 208 out of 684
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00167 VPS9 Domain present 100.0 1.2E-33 2.5E-38 249.7 10.8 115 135-253 1-116 (117)
2 PF02204 VPS9: Vacuolar sortin 99.9 3.2E-25 7E-30 189.3 11.0 103 136-241 1-103 (104)
3 KOG2319 Vacuolar assembly/sort 99.8 3.6E-20 7.7E-25 198.5 2.4 363 46-428 3-369 (477)
4 KOG2320 RAS effector RIN1 (con 99.8 2.2E-17 4.7E-22 175.7 17.4 225 16-244 271-508 (651)
5 KOG2319 Vacuolar assembly/sort 99.3 1.4E-11 3E-16 132.6 13.2 240 6-253 105-354 (477)
6 PF14747 DUF4473: Domain of un 26.6 1.6E+02 0.0034 24.5 5.1 62 17-84 20-81 (82)
7 PF08916 Phe_ZIP: Phenylalanin 26.4 1.6E+02 0.0035 23.4 4.9 53 9-62 2-54 (59)
8 PF04558 tRNA_synt_1c_R1: Glut 26.1 2.1E+02 0.0046 27.0 6.5 67 181-254 43-109 (164)
9 PF10757 YbaJ: Biofilm formati 21.2 5.4E+02 0.012 23.3 7.7 53 24-80 50-102 (122)
10 PF04878 Baculo_p48: Baculovir 21.1 1.2E+02 0.0027 32.3 4.2 51 148-201 124-180 (374)
11 PF04219 DUF413: Protein of un 21.0 77 0.0017 27.4 2.3 26 357-383 6-31 (93)
No 1
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=100.00 E-value=1.2e-33 Score=249.69 Aligned_cols=115 Identities=35% Similarity=0.584 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhh
Q 011812 135 SWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYR 214 (477)
Q Consensus 135 ~~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~ 214 (477)
+|..|+.||++||.+++|+|||.||++||+.|++.++. ..+.++|||||||+||||||||+||+|+||++||++|+
T Consensus 1 ~~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~----~~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~ 76 (117)
T smart00167 1 FVEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLET----QSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFL 76 (117)
T ss_pred CccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc----ccCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHC
Confidence 59999999999999999999999999999999998863 34667999999999999999999999999999999999
Q ss_pred cccccCCchhhHHhhHHHHHHHHHhCCCCCCCC-CHHHHH
Q 011812 215 RQSRLVGEAAYFFTNMLSAESFISNIDAQALSM-EESEFE 253 (477)
Q Consensus 215 ~~s~L~GE~gYyLTtLeaAv~FI~~ld~~sLsi-~~eeF~ 253 (477)
+++.+.||.|||||||++|++||++++.++|.+ ++++|+
T Consensus 77 ~~~~l~gE~gY~lT~l~aAv~fi~~l~~~~l~~~~~~~~~ 116 (117)
T smart00167 77 EPSLLTGEGGYYLTSLSAALALIKGLTEAHALPLSPEQEL 116 (117)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHCCHHhCCccCHHHhc
Confidence 999999999999999999999999999999974 666664
No 2
>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins.; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.
Probab=99.92 E-value=3.2e-25 Score=189.33 Aligned_cols=103 Identities=41% Similarity=0.706 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhc
Q 011812 136 WLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRR 215 (477)
Q Consensus 136 ~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~ 215 (477)
|..|+.+|++|+..++|.+|+.||.+|++.|.+.+.. ...+..+|||||||+|+|||+||+++++++++.||+.|+.
T Consensus 1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~~---~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~ 77 (104)
T PF02204_consen 1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIKT---SKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFID 77 (104)
T ss_dssp -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHHH---HCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhc---ccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHcc
Confidence 7899999999999999999999999999999998822 3567889999999999999999999999999999999998
Q ss_pred ccccCCchhhHHhhHHHHHHHHHhCC
Q 011812 216 QSRLVGEAAYFFTNMLSAESFISNID 241 (477)
Q Consensus 216 ~s~L~GE~gYyLTtLeaAv~FI~~ld 241 (477)
++.+.||.|||+|||++|++||++++
T Consensus 78 ~~~~~~e~~y~ltt~~aA~~~i~~~~ 103 (104)
T PF02204_consen 78 SSLLSGEEGYYLTTFEAAVEYIQNLE 103 (104)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHC--
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHcc
Confidence 88889999999999999999999986
No 3
>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.6e-20 Score=198.46 Aligned_cols=363 Identities=36% Similarity=0.450 Sum_probs=273.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhHHHHhcCCCCcChhhHHHHHHHHHHHhcCCCCCCcc
Q 011812 46 DSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPDDVKTDEQLSEKIALVQQFVRPENLD 125 (477)
Q Consensus 46 ~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e~LEkyVm~kLYd~lF~~~~~d~e~D~~L~~KI~~L~~~Itp~~L~ 125 (477)
+...+++++..+...+..++.|+.+.+++.+..+..+++++|+...+.+|.....+...|.....+...++..+.+...+
T Consensus 3 ~~~~~~~~~~~~~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 82 (477)
T KOG2319|consen 3 DPDLVQSTVAKYSSVFLNHPLWKISTDEELDEARDGLEKYVMTALFQRVFASDVEEVDADVLNEIDDSSLQTIISPEASG 82 (477)
T ss_pred ccccccccccchhhhhccccccccchhhhhhhccccccchhcccccccCcchhhhhhhhHhhhccccchhhhhcCHhhcc
Confidence 45678899999999999999999999999999999999999999999998843334445555555555555677888888
Q ss_pred ccCCCCCchhHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhh
Q 011812 126 IKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHS 205 (477)
Q Consensus 126 I~~~~~~e~~~~~Ai~eL~kIn~~kSP~DKL~cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~S 205 (477)
..+.+.....|..|+.++..++.+++|.+|+.|++.||+.++....+... .+.-+++++|.++|+..+++++.+++
T Consensus 83 ~~e~~~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (477)
T KOG2319|consen 83 DQETFNQNTSIENAQSELEKIELYKAPHDKLQCILSQCKLIFELLLKSSI----APNQASQFLPVLIFVTKKANPQQFHS 158 (477)
T ss_pred CccchhhccchhhhcccccccccccCchhHHHHHHHHHhhhhHHHHHhhc----ccccccccccceeeeccccCchhhhh
Confidence 88888888899999999999999999999999999999999988765432 22239999999999999999999999
Q ss_pred HHHHHHHhhcccccCCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhcCCCcccccCCCCCCcccccch
Q 011812 206 NLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFERNMESAQALLSGLSADMDGLSNQNDESEGQIS 285 (477)
Q Consensus 206 nL~YI~~F~~~s~L~GE~gYyLTtLeaAv~FI~~ld~~sLsi~~eeF~~~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (477)
++.|..+|+....+.++.+||++++..+..||-+....++.+++.+|+..|..+.+...++..-.... ..+.+.
T Consensus 159 ~~~~~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l~~~~~~i------~~~~~~ 232 (477)
T KOG2319|consen 159 NVLYEMRNRREGPLEGENKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGLTSQMLDI------PVLEQI 232 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhcccchhhccc------cccccc
Confidence 99999999999888899999999999999999999999999999999999999999888774421111 111111
Q ss_pred hhhhhhcccc--CCCCCCcccCCCCCC-CccccccccccccccCCCccCCCChHHHHhhcchhhhchh-hhhcccccccc
Q 011812 286 VEQLIQSKHQ--GVNSTKEKEHLTPVR-SSESKSVKKVTFAKDQEPITKVPSLSELENKGATMLLKEE-KASQVFQEYPY 361 (477)
Q Consensus 286 ~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~-~~~~~~~~y~~ 361 (477)
+....-.... .+..-+. ...++.. ...+ .+.. .++-..-...|.|+.|+-.++..- ..-..++.|+|
T Consensus 233 ~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~-------~~~~-~~~f~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 303 (477)
T KOG2319|consen 233 PELSKRVALASQRLALIRE-LLTPRDKKEACA-------LNCE-KPIFSALKITDDENAGADKFLPSLIYCLLKAQGPHL 303 (477)
T ss_pred cchhHHHHHHHHHHHHHHH-hhcchhhhHHHH-------HHHH-HHHHhhhhccchhhhhHHhhhHHHHHHHHhcCCccc
Confidence 1100000000 0000000 0000000 0000 0111 133334456678999977777653 56667799999
Q ss_pred cccccCCcchhhHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHhhhhhhhcCCCCCcccc
Q 011812 362 LFAQVGDLTISDVEDLLNNYKQLVFKYVCLSKGLGSAASSLPSSVLPSQVQLQVETMKAPEEHKRVE 428 (477)
Q Consensus 362 l~a~~~dl~~~dv~~ll~~yk~lv~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (477)
+.+...+++.+.++.+++.|+.++++|.+++++++.. ..+.+.++..|.-.+..+.+..+++...+
T Consensus 304 ~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~q~~~~~~~~~~~~~~~~~e 369 (477)
T KOG2319|consen 304 VSNIQYILRFRAPERLSGEEKYYLFTYACASSDIFDA-TLLSLTISSLQDFAREHTAYESEEVSLRE 369 (477)
T ss_pred ccHHHHHHhcccHHhhhccchhhhhhhhhhhhhhhhh-hhhhcccchhhhhhhhccchhhhhhhhcc
Confidence 9999999999999999999999999999999999998 56677777777665555556655544433
No 4
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.2e-17 Score=175.68 Aligned_cols=225 Identities=21% Similarity=0.308 Sum_probs=175.4
Q ss_pred HhcCCCchHHHHHHHHHHHHhhcCCC---CchhhHHHHHHHHHHHHHHHHhCCCCC------CCCHHHHHHHHH-HHHHH
Q 011812 16 RMRQPSAADFVKSIKSFIVSFSNNAP---DPERDSAAVQSFLANMEAAFRAHPLWA------GCSEEELDSAGE-GLEKY 85 (477)
Q Consensus 16 ~Lr~p~a~~lvk~IksFI~~F~~~~~---~~ee~s~~Vq~F~~~~~~~L~~~p~w~------~~se~eld~i~e-~LEky 85 (477)
.|..+.+..+.--+++|+..+...-. ++-..-.-|++|++.+.+.|..++--. ..++..+|.+.| +|.+.
T Consensus 271 ~L~qd~~tyfG~lvqD~vs~~~d~~~~~td~a~mL~~iRq~lt~~k~yL~qs~e~~~~v~~~~~s~~~leavlEs~Lhk~ 350 (651)
T KOG2320|consen 271 ELEQDKMTYFGSLVQDYVSDYEDVWHRPTDSASMLQSIRQALTRRKNYLSQSPELDTPVQPSLLSETPLEAVLESALHKS 350 (651)
T ss_pred HHhcCcccHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhHHHHhhcCCCCCCccccccCcchHHHHHHHHHHHh
Confidence 46677777777788888877765421 222334567889999999998876432 245678999988 79999
Q ss_pred HHHhHHHHhcCCCCcChhhHHHHH---HHHHHHhcCCCCCCccccCCCCCchhHHHHHHHHHhcccCCChHHHHHHHHHH
Q 011812 86 VMTKLFTRVFASIPDDVKTDEQLS---EKIALVQQFVRPENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNC 162 (477)
Q Consensus 86 Vm~kLYd~lF~~~~~d~e~D~~L~---~KI~~L~~~Itp~~L~I~~~~~~e~~~~~Ai~eL~kIn~~kSP~DKL~cIl~~ 162 (477)
|+.++-..|.........+|-.+. +..... .--.+..||+--........+.....+.+|.+..+|..||..++++
T Consensus 351 vLkPlkp~l~~~l~~~h~~dGsl~~l~en~~vv-r~~~~~~lG~~~~~Ps~~~mEqvk~k~~~m~r~YSP~kkl~~Llk~ 429 (651)
T KOG2320|consen 351 VLKPLKPNLSAQLPPVHSKDGSLQQLKENQDVV-RAANPTALGVFLSTPSDVLMEQVKQKFTAMQRRYSPSKKLHALLKA 429 (651)
T ss_pred hccccchhHhhhcchhhhhccHHHHHhccccee-cccCccccceeccCCcHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 999999888887765566664443 222111 2345677887433333344567778889999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhcccccCCchhhHHhhHHHHHHHHHhCCC
Q 011812 163 CKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDA 242 (477)
Q Consensus 163 ~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~~s~L~GE~gYyLTtLeaAv~FI~~ld~ 242 (477)
|+.|+..+.+ ...+...|||||||+|.||+.|++.+.+..+++||++|..++.+.||+|||+|++.+|+++|++++.
T Consensus 430 ckLly~~~~~---~~~g~~~gaDdflP~lsyvla~s~~~e~~~e~eYM~ELLdP~l~~geggYYLTs~~~al~~iks~~~ 506 (651)
T KOG2320|consen 430 CKLLYAGMGG---DNEGLAYGADDFLPVLSYVLARSDLQELLTEAEYMMELLDPDLLSGEGGYYLTSLYGALEHIKSLGR 506 (651)
T ss_pred HHHHHHHhcc---CCCCCCCCchhhHHHHHHHHHhcchhcchHHHHHHHHhcChhhhcCccchhHHHHHHHHHHHhcccc
Confidence 9999988753 2356788999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 011812 243 QA 244 (477)
Q Consensus 243 ~s 244 (477)
..
T Consensus 507 ~~ 508 (651)
T KOG2320|consen 507 IT 508 (651)
T ss_pred cc
Confidence 65
No 5
>KOG2319 consensus Vacuolar assembly/sorting protein VPS9 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.4e-11 Score=132.59 Aligned_cols=240 Identities=30% Similarity=0.334 Sum_probs=183.7
Q ss_pred ccchHHHHHHHhcCCCchHHHHHHHHHHHHhhcCCCCc----hhhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 011812 6 VFLGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDP----ERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEG 81 (477)
Q Consensus 6 ~~~~f~~FL~~Lr~p~a~~lvk~IksFI~~F~~~~~~~----ee~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e~ 81 (477)
....++.+|..+..-...-+....++|+..+......+ -......++|+......++.-. .-........+..
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~l~~~~~~~~~ 181 (477)
T KOG2319|consen 105 LYKAPHDKLQCILSQCKLIFELLLKSSIAPNQASQFLPVLIFVTKKANPQQFHSNVLYEMRNRR---EGPLEGENKLYFT 181 (477)
T ss_pred cccCchhHHHHHHHHHhhhhHHHHHhhcccccccccccceeeeccccCchhhhhhHHHHHHHHH---hhhHHHHHHHHHH
Confidence 45778888888776666666676677776665111000 0222345567777655554211 0111122334446
Q ss_pred HHHHHHHhHHHHhcCCCC-cChhhHHHHHHHHHHHhcCCCCCCccccCCCCCc---hhHHHHHHHHHhcccCCChHH-HH
Q 011812 82 LEKYVMTKLFTRVFASIP-DDVKTDEQLSEKIALVQQFVRPENLDIKASFQNE---TSWLLAQKELQKINMYKAPRD-KL 156 (477)
Q Consensus 82 LEkyVm~kLYd~lF~~~~-~d~e~D~~L~~KI~~L~~~Itp~~L~I~~~~~~e---~~~~~Ai~eL~kIn~~kSP~D-KL 156 (477)
.+...+..++..++.... ++.+.|..+..+++++ +|+++..++|+...... .....+...+..|+.+..|++ |.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 260 (477)
T KOG2319|consen 182 CEDSAEAFISNILLDSETSDDAEFDLALSKAIRRL-QGLTSQMLDIPVLEQIPELSKRVALASQRLALIRELLTPRDKKE 260 (477)
T ss_pred HhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhh-cccchhhccccccccccchhHHHHHHHHHHHHHHHhhcchhhhH
Confidence 777888888888888764 4678899999999998 89999999988765432 245678899999999999999 79
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhcccccCCchhhHHhhHHHHHHH
Q 011812 157 VCILNCCKVINNLLLNASIALNENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESF 236 (477)
Q Consensus 157 ~cIl~~~k~I~~~l~~~s~~s~~~~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~~s~L~GE~gYyLTtLeaAv~F 236 (477)
.|.++|++.|+..+.. ......++|.|+|.++|.+++.+++++.++++|+.+|+.+.++.|+.+|++.++.++-.+
T Consensus 261 ~~~~~~~~~~f~~l~~----~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 336 (477)
T KOG2319|consen 261 ACALNCEKPIFSALKI----TDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERLSGEEKYYLFTYACASSD 336 (477)
T ss_pred HHHHHHHHHHHhhhhc----cchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhhhccchhhhhhhhhhhhh
Confidence 9999999999998763 456778999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCHH-HHH
Q 011812 237 ISNIDAQALSMEES-EFE 253 (477)
Q Consensus 237 I~~ld~~sLsi~~e-eF~ 253 (477)
|......++.|... .|.
T Consensus 337 ~~~~~~~~~~i~~~q~~~ 354 (477)
T KOG2319|consen 337 IFDATLLSLTISSLQDFA 354 (477)
T ss_pred hhhhhhhhcccchhhhhh
Confidence 99999999998774 454
No 6
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=26.60 E-value=1.6e+02 Score=24.53 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=38.8
Q ss_pred hcCCCchHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q 011812 17 MRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEK 84 (477)
Q Consensus 17 Lr~p~a~~lvk~IksFI~~F~~~~~~~ee~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e~LEk 84 (477)
|+...+..|++-...|-..|.....+.+.....+..|...+...|... ++++.......||+
T Consensus 20 mS~~aidgi~~i~~~~~~~~~~~~~~~e~~~~~~~~~~~e~~~fikt~------s~~DQ~~y~~~~eK 81 (82)
T PF14747_consen 20 MSEKAIDGIVKIAEKFKSQFAKAKGNKEAAKKFFEKYKAEVDAFIKTQ------SEEDQTAYNAFVEK 81 (82)
T ss_pred CCHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHhc
Confidence 334445556665556665555445566777788889999999888853 55554444445554
No 7
>PF08916 Phe_ZIP: Phenylalanine zipper; InterPro: IPR015012 The phenylalanine zipper consists of aromatic side chains from ten phenylalanine residues that are stacked within a hydrophobic core. This zipper mediates dimerisation of various proteins, such as APS, SH2-B and Lnk []. ; GO: 0004871 signal transducer activity, 0035556 intracellular signal transduction; PDB: 1Q2H_B.
Probab=26.45 E-value=1.6e+02 Score=23.44 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=34.7
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHH
Q 011812 9 GLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFR 62 (477)
Q Consensus 9 ~f~~FL~~Lr~p~a~~lvk~IksFI~~F~~~~~~~ee~s~~Vq~F~~~~~~~L~ 62 (477)
++.+|=++--.-+|.|++|+...|+........ +.......+.|.+...+.+.
T Consensus 2 ~W~EFCE~HA~aaA~dfAk~~~~f~~~nP~~a~-~~~~~~F~~kF~d~F~~hF~ 54 (59)
T PF08916_consen 2 GWREFCERHARAAARDFAKAFRRFINENPQYAR-PLSHRSFSRKFADLFQEHFE 54 (59)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-GGG-S-TTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-CCCHHHHHHHHHHHHHHHHH
Confidence 578899998888899999999999987754422 22333445555555554443
No 8
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=26.12 E-value=2.1e+02 Score=27.05 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCCchhhhHHHHHHHHHcCCcchhhHHHHHHHhhcccccCCchhhHHhhHHHHHHHHHhCCCCCCCCCHHHHHH
Q 011812 181 PPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNIDAQALSMEESEFER 254 (477)
Q Consensus 181 ~~gADDfLPiLIYVIIKAnpp~L~SnL~YI~~F~~~s~L~GE~gYyLTtLeaAv~FI~~ld~~sLsi~~eeF~~ 254 (477)
..+.|.=.-.|+|-+.-.-+++-..+..||-.|....++.+. -++.+|+.|+.....+ .++..+|++
T Consensus 43 ~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gklkt~-----~Ql~AA~~Yl~~~~~~--~~d~~~Fe~ 109 (164)
T PF04558_consen 43 DSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGKLKTN-----LQLDAALKYLKSNPSE--PIDVAEFEK 109 (164)
T ss_dssp T----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS--SH-----HHHHHHHHHHHHHGG---G--HHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHCCCC--CCCHHHHHH
Confidence 357788888999998876666677888899898887776554 3689999999987662 344555543
No 9
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=21.20 E-value=5.4e+02 Score=23.34 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Q 011812 24 DFVKSIKSFIVSFSNNAPDPERDSAAVQSFLANMEAAFRAHPLWAGCSEEELDSAGE 80 (477)
Q Consensus 24 ~lvk~IksFI~~F~~~~~~~ee~s~~Vq~F~~~~~~~L~~~p~w~~~se~eld~i~e 80 (477)
++..+|-+|+-.|+-.-++-......|-++++.....|.... .+..++...+.
T Consensus 50 eLIEHIA~F~~~fKIKYp~~~~l~~~ideYLDeTy~LFssy~----In~~dL~~Wqk 102 (122)
T PF10757_consen 50 ELIEHIAAFIWNFKIKYPDESDLIELIDEYLDETYMLFSSYG----INDSDLQKWQK 102 (122)
T ss_pred HHHHHHHHHHHhheeccCcHhhHHHHHHHHHHHHHHHhcCcc----CCHHHHHHHHH
Confidence 677788888888875545555667777888888877776542 34444444443
No 10
>PF04878 Baculo_p48: Baculovirus P48 protein; InterPro: IPR006962 This family comprises the Baculovirus P48 proteins. They contain two possible membrane-spanning domains and a cysteine-rich domain that are conserved in all of the proteins. The Bombyx mori (Silk moth) nuclear polyhedrosis virus protein, O92463 from SWISSPROT, has been described as a putative DNA helicase.
Probab=21.12 E-value=1.2e+02 Score=32.32 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=34.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCchhh------hHHHHHHHHHcCCc
Q 011812 148 MYKAPRDKLVCILNCCKVINNLLLNASIALNENPPGADEF------LPVLIYVTIKANPP 201 (477)
Q Consensus 148 ~~kSP~DKL~cIl~~~k~I~~~l~~~s~~s~~~~~gADDf------LPiLIYVIIKAnpp 201 (477)
..++|..|+.|+..=|.-+...+.... .+-.=|=|-| +|+|+||++|++..
T Consensus 124 ~~C~~~~kl~Cl~Ck~~YlS~~is~lD---~~iQ~GWDiFlRPM~GlPLllfvl~kTd~~ 180 (374)
T PF04878_consen 124 DKCSPVNKLECLTCKINYLSEAISTLD---SGIQDGWDIFLRPMFGLPLLLFVLFKTDFS 180 (374)
T ss_pred hhcccccccchhhhhHHHHHHHHHHHH---hhhhccHHHHHHHHhhhHHHHHHhhccccC
Confidence 345668899998777776666554221 1222345665 59999999999875
No 11
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=20.97 E-value=77 Score=27.42 Aligned_cols=26 Identities=35% Similarity=0.750 Sum_probs=21.3
Q ss_pred ccccccccccCCcchhhHHHHHHHHHH
Q 011812 357 QEYPYLFAQVGDLTISDVEDLLNNYKQ 383 (477)
Q Consensus 357 ~~y~~l~a~~~dl~~~dv~~ll~~yk~ 383 (477)
+.||+=|+|.||.||.+ ++||..|=.
T Consensus 6 ~~fPrGF~RsGdFTi~E-a~lLe~~G~ 31 (93)
T PF04219_consen 6 KNFPRGFSRSGDFTIKE-AQLLEQYGH 31 (93)
T ss_pred CCCCCccccCCcccHHH-HHHHHHHHH
Confidence 67999999999999988 456666654
Done!