Query 011813
Match_columns 477
No_of_seqs 398 out of 2467
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 1.6E-62 3.5E-67 520.3 33.6 433 2-477 165-630 (1227)
2 KOG1028 Ca2+-dependent phospho 99.9 9E-27 1.9E-31 237.4 19.8 182 258-475 161-352 (421)
3 cd04016 C2_Tollip C2 domain pr 99.9 5.6E-22 1.2E-26 167.8 14.5 119 263-392 1-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 9.1E-21 2E-25 162.8 13.6 118 266-390 1-125 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.5E-20 5.5E-25 158.9 15.2 120 266-394 2-121 (121)
6 cd08681 C2_fungal_Inn1p-like C 99.8 1.3E-20 2.8E-25 160.0 12.8 117 264-392 1-118 (118)
7 cd08677 C2A_Synaptotagmin-13 C 99.8 8E-21 1.7E-25 158.3 11.1 106 259-367 9-117 (118)
8 cd08376 C2B_MCTP_PRT C2 domain 99.8 3.6E-20 7.7E-25 156.7 14.5 115 265-393 1-115 (116)
9 cd08395 C2C_Munc13 C2 domain t 99.8 3.4E-20 7.3E-25 156.6 14.1 109 265-374 1-116 (120)
10 cd08375 C2_Intersectin C2 doma 99.8 4.6E-20 1E-24 160.1 15.0 121 259-392 10-135 (136)
11 cd04036 C2_cPLA2 C2 domain pre 99.8 7.5E-20 1.6E-24 155.5 14.8 116 266-392 2-117 (119)
12 cd08379 C2D_MCTP_PRT_plant C2 99.8 8.6E-20 1.9E-24 155.5 13.7 116 265-388 1-125 (126)
13 cd04028 C2B_RIM1alpha C2 domai 99.8 1.7E-19 3.7E-24 157.3 13.8 112 262-374 27-142 (146)
14 cd04044 C2A_Tricalbin-like C2 99.8 2.3E-19 5E-24 153.5 14.0 122 263-394 1-124 (124)
15 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.7E-19 3.7E-24 155.1 13.2 121 265-393 1-126 (127)
16 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.5E-19 5.4E-24 158.0 14.1 127 265-394 1-133 (150)
17 cd04024 C2A_Synaptotagmin-like 99.8 2.3E-19 5E-24 154.4 13.6 123 264-392 1-128 (128)
18 KOG1030 Predicted Ca2+-depende 99.8 8.8E-20 1.9E-24 157.8 10.8 100 261-364 3-102 (168)
19 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 2.6E-19 5.6E-24 153.1 13.7 122 265-390 1-122 (123)
20 cd08381 C2B_PI3K_class_II C2 d 99.8 1.3E-19 2.8E-24 154.5 11.5 105 263-368 12-121 (122)
21 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 4.6E-19 9.9E-24 150.9 14.6 119 266-392 2-121 (121)
22 cd08400 C2_Ras_p21A1 C2 domain 99.8 7.1E-19 1.5E-23 150.9 15.5 122 263-394 3-124 (126)
23 cd08678 C2_C21orf25-like C2 do 99.8 7.5E-19 1.6E-23 150.9 15.3 122 266-395 1-122 (126)
24 cd08391 C2A_C2C_Synaptotagmin_ 99.8 4.9E-19 1.1E-23 150.8 13.2 115 264-392 1-121 (121)
25 cd08393 C2A_SLP-1_2 C2 domain 99.8 3.3E-19 7.2E-24 152.7 11.7 110 259-368 10-124 (125)
26 cd04046 C2_Calpain C2 domain p 99.8 2E-18 4.3E-23 148.2 15.7 123 262-394 1-123 (126)
27 cd04029 C2A_SLP-4_5 C2 domain 99.8 6.9E-19 1.5E-23 150.7 12.5 110 259-368 10-124 (125)
28 cd08387 C2A_Synaptotagmin-8 C2 99.8 9.3E-19 2E-23 149.9 12.0 112 258-369 10-123 (124)
29 cd08378 C2B_MCTP_PRT_plant C2 99.8 2E-18 4.4E-23 146.9 13.6 113 266-392 2-119 (121)
30 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 2.6E-18 5.6E-23 149.0 14.3 123 265-393 1-133 (133)
31 cd08388 C2A_Synaptotagmin-4-11 99.8 2.1E-18 4.5E-23 148.3 13.4 111 259-369 11-127 (128)
32 cd04015 C2_plant_PLD C2 domain 99.8 4.4E-18 9.5E-23 151.5 15.5 123 263-393 6-158 (158)
33 cd08377 C2C_MCTP_PRT C2 domain 99.8 3.9E-18 8.4E-23 144.9 14.3 118 264-392 1-118 (119)
34 cd08680 C2_Kibra C2 domain fou 99.8 1.3E-18 2.7E-23 148.2 11.0 110 258-367 8-123 (124)
35 cd04010 C2B_RasA3 C2 domain se 99.8 2.6E-18 5.6E-23 150.7 13.3 124 265-390 1-147 (148)
36 cd08385 C2A_Synaptotagmin-1-5- 99.8 2.5E-18 5.5E-23 147.2 12.5 110 259-368 11-122 (124)
37 cd04041 C2A_fungal C2 domain f 99.8 1.3E-18 2.9E-23 145.9 10.5 95 264-358 1-99 (111)
38 KOG2059 Ras GTPase-activating 99.8 1.2E-18 2.6E-23 178.0 11.0 174 264-476 5-184 (800)
39 cd08392 C2A_SLP-3 C2 domain fi 99.8 3.6E-18 7.9E-23 146.6 12.0 110 259-368 10-127 (128)
40 cd04043 C2_Munc13_fungal C2 do 99.8 1.1E-17 2.3E-22 143.7 14.5 118 265-394 2-122 (126)
41 cd04017 C2D_Ferlin C2 domain f 99.8 1.2E-17 2.6E-22 145.2 14.7 120 265-395 2-134 (135)
42 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 9.7E-18 2.1E-22 142.9 13.9 118 266-391 2-120 (121)
43 cd04014 C2_PKC_epsilon C2 doma 99.8 1.2E-17 2.7E-22 144.5 14.7 116 263-394 3-130 (132)
44 cd08373 C2A_Ferlin C2 domain f 99.8 1.4E-17 3E-22 143.3 14.8 117 270-397 2-120 (127)
45 cd08389 C2A_Synaptotagmin-14_1 99.8 6.2E-18 1.3E-22 144.6 12.0 111 258-369 10-123 (124)
46 cd04032 C2_Perforin C2 domain 99.8 8.3E-18 1.8E-22 143.5 12.3 108 248-359 12-120 (127)
47 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.1E-17 2.4E-22 143.5 12.7 111 259-369 11-124 (125)
48 cd04039 C2_PSD C2 domain prese 99.7 8.3E-18 1.8E-22 140.0 10.8 94 264-360 1-99 (108)
49 cd08685 C2_RGS-like C2 domain 99.7 5.3E-18 1.1E-22 143.8 9.6 106 262-368 10-119 (119)
50 cd08382 C2_Smurf-like C2 domai 99.7 2.4E-17 5.2E-22 140.9 13.6 119 266-391 2-123 (123)
51 cd08521 C2A_SLP C2 domain firs 99.7 1.3E-17 2.9E-22 142.4 11.0 110 259-368 9-123 (123)
52 cd04030 C2C_KIAA1228 C2 domain 99.7 2.2E-17 4.7E-22 142.0 12.1 110 259-368 11-126 (127)
53 cd08390 C2A_Synaptotagmin-15-1 99.7 3.8E-17 8.3E-22 139.6 13.3 112 258-369 8-122 (123)
54 cd04050 C2B_Synaptotagmin-like 99.7 2.4E-17 5.2E-22 136.8 11.1 99 265-369 1-101 (105)
55 cd08690 C2_Freud-1 C2 domain f 99.7 1.1E-16 2.4E-21 140.7 15.4 124 264-394 4-138 (155)
56 cd04031 C2A_RIM1alpha C2 domai 99.7 3.7E-17 8E-22 140.1 11.8 109 259-368 11-124 (125)
57 cd04027 C2B_Munc13 C2 domain s 99.7 1.1E-16 2.3E-21 137.7 13.9 115 265-390 2-127 (127)
58 cd04040 C2D_Tricalbin-like C2 99.7 1.1E-16 2.3E-21 135.2 13.5 114 266-388 1-114 (115)
59 cd08676 C2A_Munc13-like C2 dom 99.7 5.9E-17 1.3E-21 142.6 12.0 106 258-368 22-153 (153)
60 cd08406 C2B_Synaptotagmin-12 C 99.7 2.6E-17 5.7E-22 142.5 9.5 110 259-370 10-123 (136)
61 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 4.7E-17 1E-21 145.5 11.3 110 260-369 23-137 (162)
62 cd04051 C2_SRC2_like C2 domain 99.7 5.3E-17 1.2E-21 139.2 11.1 115 265-388 1-125 (125)
63 cd08688 C2_KIAA0528-like C2 do 99.7 5.4E-17 1.2E-21 135.9 9.9 101 266-369 1-108 (110)
64 cd04037 C2E_Ferlin C2 domain f 99.7 6.7E-17 1.5E-21 138.2 10.5 120 265-394 1-120 (124)
65 cd04049 C2_putative_Elicitor-r 99.7 7.5E-17 1.6E-21 138.0 10.7 104 264-370 1-108 (124)
66 cd08407 C2B_Synaptotagmin-13 C 99.7 4.5E-17 9.8E-22 141.0 9.1 110 259-370 10-125 (138)
67 cd08394 C2A_Munc13 C2 domain f 99.7 1.7E-16 3.8E-21 133.6 11.4 100 263-371 1-102 (127)
68 cd08691 C2_NEDL1-like C2 domai 99.7 7E-16 1.5E-20 133.5 15.3 118 265-390 2-136 (137)
69 cd04038 C2_ArfGAP C2 domain pr 99.7 1.9E-16 4.2E-21 138.5 11.4 93 263-360 1-93 (145)
70 cd08384 C2B_Rabphilin_Doc2 C2 99.7 7.2E-17 1.6E-21 139.9 8.6 110 259-370 8-121 (133)
71 cd04009 C2B_Munc13-like C2 dom 99.7 2.7E-16 5.8E-21 136.3 11.4 101 259-359 11-119 (133)
72 PLN03008 Phospholipase D delta 99.7 4.6E-16 1E-20 165.2 15.1 130 262-399 12-183 (868)
73 cd04018 C2C_Ferlin C2 domain t 99.7 3.8E-16 8.2E-21 137.3 12.0 93 265-360 1-108 (151)
74 cd04045 C2C_Tricalbin-like C2 99.7 5.3E-16 1.1E-20 131.8 12.3 103 264-370 1-103 (120)
75 cd08675 C2B_RasGAP C2 domain s 99.7 4.1E-16 8.9E-21 135.6 11.6 106 266-372 1-122 (137)
76 cd08408 C2B_Synaptotagmin-14_1 99.7 3.6E-16 7.7E-21 136.0 10.7 111 258-369 9-124 (138)
77 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.6E-16 3.4E-21 138.3 8.5 108 260-369 11-122 (136)
78 cd08405 C2B_Synaptotagmin-7 C2 99.7 5.4E-16 1.2E-20 135.0 11.7 109 259-369 10-122 (136)
79 cd08692 C2B_Tac2-N C2 domain s 99.7 3.4E-16 7.4E-21 133.7 9.6 110 259-369 9-122 (135)
80 cd04052 C2B_Tricalbin-like C2 99.7 7.1E-16 1.5E-20 129.3 10.9 101 281-394 9-110 (111)
81 cd08403 C2B_Synaptotagmin-3-5- 99.7 2.1E-16 4.5E-21 137.2 7.6 109 259-369 9-121 (134)
82 cd04011 C2B_Ferlin C2 domain s 99.7 1.1E-15 2.3E-20 128.2 11.7 97 265-368 5-108 (111)
83 cd04021 C2_E3_ubiquitin_ligase 99.7 2.4E-15 5.2E-20 128.8 13.9 118 264-390 2-124 (125)
84 cd04048 C2A_Copine C2 domain f 99.7 7.8E-16 1.7E-20 130.9 10.7 100 270-369 6-113 (120)
85 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.4E-15 3E-20 130.0 12.0 109 258-367 9-122 (123)
86 cd08402 C2B_Synaptotagmin-1 C2 99.6 5.9E-16 1.3E-20 134.7 9.6 110 259-370 10-123 (136)
87 cd08409 C2B_Synaptotagmin-15 C 99.6 2.6E-16 5.7E-21 136.9 7.2 111 259-370 10-124 (137)
88 cd08410 C2B_Synaptotagmin-17 C 99.6 1E-15 2.2E-20 133.0 10.6 110 259-369 9-122 (135)
89 cd08686 C2_ABR C2 domain in th 99.6 4.9E-15 1.1E-19 123.2 13.0 95 266-367 1-106 (118)
90 cd04013 C2_SynGAP_like C2 doma 99.6 7.9E-15 1.7E-19 127.6 14.8 126 262-395 9-141 (146)
91 cd08383 C2A_RasGAP C2 domain ( 99.6 1E-14 2.2E-19 123.3 14.1 114 266-392 2-117 (117)
92 cd04026 C2_PKC_alpha_gamma C2 99.6 5.2E-15 1.1E-19 127.9 11.1 106 264-370 13-121 (131)
93 cd00276 C2B_Synaptotagmin C2 d 99.6 1.2E-15 2.6E-20 132.3 6.8 110 259-370 9-122 (134)
94 cd00275 C2_PLC_like C2 domain 99.6 3.1E-14 6.7E-19 122.4 14.5 119 265-392 3-127 (128)
95 cd04047 C2B_Copine C2 domain s 99.6 1E-14 2.3E-19 122.0 11.0 96 268-364 4-106 (110)
96 KOG0696 Serine/threonine prote 99.6 1.6E-15 3.5E-20 147.6 5.7 108 261-369 177-287 (683)
97 PLN03200 cellulose synthase-in 99.5 2.1E-14 4.6E-19 165.8 11.8 123 259-394 1975-2101(2102)
98 PF00168 C2: C2 domain; Inter 99.5 5.7E-14 1.2E-18 111.0 8.9 85 266-350 1-85 (85)
99 COG5038 Ca2+-dependent lipid-b 99.5 1.5E-12 3.3E-17 140.8 21.3 172 222-396 655-843 (1227)
100 KOG1013 Synaptic vesicle prote 99.5 8.3E-15 1.8E-19 138.5 3.2 187 259-477 88-289 (362)
101 cd08374 C2F_Ferlin C2 domain s 99.4 3.2E-12 6.9E-17 109.3 11.5 95 266-360 2-125 (133)
102 KOG1011 Neurotransmitter relea 99.4 1.1E-12 2.4E-17 132.9 8.0 123 260-393 291-424 (1283)
103 cd08677 C2A_Synaptotagmin-13 C 99.4 1.5E-12 3.3E-17 108.7 7.0 62 384-477 1-66 (118)
104 smart00239 C2 Protein kinase C 99.3 9.9E-12 2.1E-16 100.9 10.6 95 266-360 2-96 (101)
105 cd00030 C2 C2 domain. The C2 d 99.3 2.6E-11 5.7E-16 98.0 10.6 100 266-367 1-101 (102)
106 KOG1028 Ca2+-dependent phospho 99.2 2.3E-11 4.9E-16 124.6 10.0 97 259-355 293-393 (421)
107 PF10296 DUF2404: Putative int 99.2 1.3E-10 2.7E-15 93.4 10.1 85 78-163 1-89 (91)
108 cd08407 C2B_Synaptotagmin-13 C 99.2 3.4E-11 7.4E-16 104.3 7.2 63 383-477 1-73 (138)
109 cd08406 C2B_Synaptotagmin-12 C 99.2 2.6E-11 5.6E-16 105.1 5.8 61 384-476 2-70 (136)
110 cd04029 C2A_SLP-4_5 C2 domain 99.2 7.3E-11 1.6E-15 101.0 7.6 62 383-476 1-71 (125)
111 PLN02223 phosphoinositide phos 99.1 2.4E-10 5.2E-15 117.5 11.7 98 263-360 408-512 (537)
112 cd08393 C2A_SLP-1_2 C2 domain 99.1 7.5E-11 1.6E-15 100.9 6.3 62 383-476 1-71 (125)
113 cd04028 C2B_RIM1alpha C2 domai 99.1 1.5E-10 3.3E-15 101.1 7.1 64 380-477 14-86 (146)
114 cd08392 C2A_SLP-3 C2 domain fi 99.1 1.5E-10 3.3E-15 99.3 7.0 62 383-476 1-71 (128)
115 PLN02270 phospholipase D alpha 99.1 8.9E-10 1.9E-14 117.9 14.0 130 262-399 6-154 (808)
116 cd08388 C2A_Synaptotagmin-4-11 99.1 2.4E-10 5.1E-15 98.2 7.8 63 383-477 2-71 (128)
117 PLN02952 phosphoinositide phos 99.1 1.4E-09 3.1E-14 114.3 14.7 104 263-369 469-580 (599)
118 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.1 2.1E-10 4.5E-15 102.6 7.2 74 383-476 1-82 (162)
119 cd08381 C2B_PI3K_class_II C2 d 99.1 2.2E-10 4.7E-15 97.6 6.4 50 428-477 12-68 (122)
120 cd04030 C2C_KIAA1228 C2 domain 99.1 3.7E-10 8.1E-15 96.8 7.2 63 382-476 1-71 (127)
121 cd08409 C2B_Synaptotagmin-15 C 99.0 4.1E-10 9E-15 97.9 6.7 62 383-476 1-69 (137)
122 cd08692 C2B_Tac2-N C2 domain s 99.0 4.4E-10 9.6E-15 96.2 6.4 59 385-475 2-69 (135)
123 cd04031 C2A_RIM1alpha C2 domai 99.0 5.3E-10 1.2E-14 95.5 6.7 62 383-476 2-71 (125)
124 KOG1328 Synaptic vesicle prote 99.0 8.6E-11 1.9E-15 121.0 1.9 133 259-397 109-305 (1103)
125 cd08410 C2B_Synaptotagmin-17 C 99.0 4.6E-10 1E-14 97.4 6.1 61 384-476 1-69 (135)
126 cd08387 C2A_Synaptotagmin-8 C2 99.0 7.9E-10 1.7E-14 94.4 6.9 62 383-476 2-69 (124)
127 cd08386 C2A_Synaptotagmin-7 C2 99.0 1.1E-09 2.3E-14 93.7 7.3 62 383-476 2-69 (125)
128 cd08685 C2_RGS-like C2 domain 99.0 1.1E-09 2.4E-14 92.8 6.9 49 428-476 11-66 (119)
129 PLN02230 phosphoinositide phos 99.0 2.8E-09 6E-14 111.9 10.9 99 263-361 468-574 (598)
130 cd08680 C2_Kibra C2 domain fou 99.0 1.2E-09 2.6E-14 93.1 6.4 50 427-476 12-70 (124)
131 cd08408 C2B_Synaptotagmin-14_1 99.0 1.2E-09 2.5E-14 95.1 6.4 61 384-476 2-71 (138)
132 cd08385 C2A_Synaptotagmin-1-5- 99.0 1.7E-09 3.7E-14 92.4 7.2 62 383-476 2-69 (124)
133 cd08404 C2B_Synaptotagmin-4 C2 98.9 1.6E-09 3.5E-14 94.1 6.8 62 383-476 1-70 (136)
134 cd08402 C2B_Synaptotagmin-1 C2 98.9 1.6E-09 3.4E-14 94.2 6.7 62 383-476 1-70 (136)
135 cd08405 C2B_Synaptotagmin-7 C2 98.9 2.1E-09 4.6E-14 93.3 6.7 62 383-476 1-70 (136)
136 KOG0169 Phosphoinositide-speci 98.9 8.2E-09 1.8E-13 108.4 11.9 98 265-362 617-721 (746)
137 cd08521 C2A_SLP C2 domain firs 98.9 3E-09 6.4E-14 90.6 6.9 61 384-476 1-70 (123)
138 PLN02222 phosphoinositide phos 98.9 1.9E-08 4.1E-13 105.5 14.2 99 263-361 451-557 (581)
139 PLN02228 Phosphoinositide phos 98.9 2E-08 4.4E-13 105.0 14.0 123 264-394 431-562 (567)
140 cd04009 C2B_Munc13-like C2 dom 98.9 2.8E-09 6E-14 92.3 6.4 62 383-476 2-73 (133)
141 cd08689 C2_fungal_Pkc1p C2 dom 98.9 4.8E-09 1E-13 84.5 7.1 86 266-359 1-89 (109)
142 cd08403 C2B_Synaptotagmin-3-5- 98.9 3.1E-09 6.6E-14 92.1 6.6 61 384-476 1-69 (134)
143 KOG1328 Synaptic vesicle prote 98.9 6.7E-10 1.4E-14 114.5 2.1 99 259-357 942-1048(1103)
144 cd08379 C2D_MCTP_PRT_plant C2 98.8 2.7E-09 5.8E-14 91.0 4.7 48 430-477 1-54 (126)
145 cd08390 C2A_Synaptotagmin-15-1 98.8 7.2E-09 1.6E-13 88.3 7.2 61 384-476 1-68 (123)
146 cd08384 C2B_Rabphilin_Doc2 C2 98.8 5.9E-09 1.3E-13 90.2 6.6 50 427-476 11-68 (133)
147 cd04035 C2A_Rabphilin_Doc2 C2 98.8 9.9E-09 2.1E-13 87.5 7.5 62 383-476 1-70 (123)
148 cd04016 C2_Tollip C2 domain pr 98.8 5.6E-09 1.2E-13 88.4 5.7 49 429-477 2-53 (121)
149 cd08389 C2A_Synaptotagmin-14_1 98.8 6.7E-09 1.4E-13 88.7 6.2 61 383-476 2-68 (124)
150 cd00276 C2B_Synaptotagmin C2 d 98.8 8.6E-09 1.9E-13 89.1 6.9 61 384-476 1-69 (134)
151 cd04050 C2B_Synaptotagmin-like 98.8 4.7E-09 1E-13 86.9 4.8 47 430-476 1-50 (105)
152 cd04011 C2B_Ferlin C2 domain s 98.8 7.7E-09 1.7E-13 86.5 6.2 49 427-476 2-50 (111)
153 cd04039 C2_PSD C2 domain prese 98.8 6.9E-09 1.5E-13 86.3 5.7 48 429-476 1-55 (108)
154 cd08682 C2_Rab11-FIP_classI C2 98.8 7E-09 1.5E-13 88.9 4.8 46 431-476 1-49 (126)
155 cd04032 C2_Perforin C2 domain 98.7 1.1E-08 2.4E-13 87.3 4.7 50 427-476 26-77 (127)
156 cd04022 C2A_MCTP_PRT_plant C2 98.7 1.3E-08 2.8E-13 87.3 5.1 47 430-476 1-50 (127)
157 cd08395 C2C_Munc13 C2 domain t 98.7 1.3E-08 2.9E-13 85.9 4.9 47 430-476 1-56 (120)
158 cd08375 C2_Intersectin C2 doma 98.7 1.8E-08 3.8E-13 87.5 5.5 50 427-476 13-65 (136)
159 KOG2059 Ras GTPase-activating 98.7 2.5E-08 5.4E-13 103.3 7.4 123 271-394 138-277 (800)
160 KOG1031 Predicted Ca2+-depende 98.7 3.6E-08 7.8E-13 99.6 8.2 121 264-394 3-137 (1169)
161 cd08394 C2A_Munc13 C2 domain f 98.7 2.5E-08 5.4E-13 84.3 5.8 48 429-477 2-49 (127)
162 KOG1264 Phospholipase C [Lipid 98.7 6.1E-08 1.3E-12 101.4 9.6 126 264-398 1065-1194(1267)
163 cd08376 C2B_MCTP_PRT C2 domain 98.7 2.2E-08 4.8E-13 84.3 5.0 47 430-476 1-50 (116)
164 cd08378 C2B_MCTP_PRT_plant C2 98.7 1.6E-08 3.4E-13 86.0 4.0 47 430-477 1-47 (121)
165 cd04038 C2_ArfGAP C2 domain pr 98.7 4E-08 8.6E-13 86.1 6.2 48 429-476 2-51 (145)
166 cd04041 C2A_fungal C2 domain f 98.7 3.5E-08 7.7E-13 82.5 5.5 48 429-476 1-55 (111)
167 cd08400 C2_Ras_p21A1 C2 domain 98.6 4.2E-08 9.1E-13 84.0 5.7 48 428-476 3-51 (126)
168 cd08681 C2_fungal_Inn1p-like C 98.6 2.6E-08 5.6E-13 84.2 4.3 48 429-476 1-52 (118)
169 cd04046 C2_Calpain C2 domain p 98.6 4.8E-08 1E-12 83.7 5.3 50 428-477 2-54 (126)
170 cd08688 C2_KIAA0528-like C2 do 98.6 4.2E-08 9.2E-13 81.9 4.9 45 431-475 1-50 (110)
171 cd04026 C2_PKC_alpha_gamma C2 98.6 8.9E-08 1.9E-12 82.5 6.9 48 429-476 13-68 (131)
172 cd04017 C2D_Ferlin C2 domain f 98.6 6.2E-08 1.3E-12 84.0 5.9 47 430-476 2-51 (135)
173 cd04024 C2A_Synaptotagmin-like 98.6 6.6E-08 1.4E-12 82.9 5.6 48 429-476 1-53 (128)
174 cd04025 C2B_RasA1_RasA4 C2 dom 98.6 6E-08 1.3E-12 82.6 5.2 47 430-476 1-50 (123)
175 cd08686 C2_ABR C2 domain in th 98.6 5.5E-08 1.2E-12 81.1 4.7 45 431-477 1-50 (118)
176 cd08377 C2C_MCTP_PRT C2 domain 98.6 6.9E-08 1.5E-12 81.6 5.4 48 429-476 1-51 (119)
177 PLN02352 phospholipase D epsil 98.6 4.9E-07 1.1E-11 97.0 12.6 123 261-399 7-136 (758)
178 cd08391 C2A_C2C_Synaptotagmin_ 98.5 7.9E-08 1.7E-12 81.5 4.8 48 429-476 1-57 (121)
179 cd08401 C2A_RasA2_RasA3 C2 dom 98.5 1.1E-07 2.4E-12 80.8 5.5 47 431-477 2-53 (121)
180 cd04027 C2B_Munc13 C2 domain s 98.5 1.5E-07 3.3E-12 80.6 5.4 48 429-476 1-51 (127)
181 cd04015 C2_plant_PLD C2 domain 98.5 1.8E-07 3.8E-12 83.4 5.8 50 428-477 6-89 (158)
182 cd04042 C2A_MCTP_PRT C2 domain 98.5 1.8E-07 3.9E-12 79.4 5.5 47 430-476 1-51 (121)
183 cd04044 C2A_Tricalbin-like C2 98.5 2E-07 4.2E-12 79.4 5.7 48 429-476 2-55 (124)
184 cd04014 C2_PKC_epsilon C2 doma 98.5 2.3E-07 4.9E-12 80.1 6.0 50 427-476 2-65 (132)
185 cd04054 C2A_Rasal1_RasA4 C2 do 98.5 2.2E-07 4.8E-12 78.9 5.6 46 431-476 2-51 (121)
186 cd08678 C2_C21orf25-like C2 do 98.5 2E-07 4.4E-12 79.8 5.3 46 431-476 1-49 (126)
187 cd04036 C2_cPLA2 C2 domain pre 98.5 1.7E-07 3.7E-12 79.4 4.3 46 431-476 2-53 (119)
188 KOG0905 Phosphoinositide 3-kin 98.4 1.4E-07 3E-12 102.4 4.5 108 262-369 1522-1634(1639)
189 cd08382 C2_Smurf-like C2 domai 98.4 2.2E-07 4.7E-12 79.2 4.9 46 431-476 2-51 (123)
190 cd08383 C2A_RasGAP C2 domain ( 98.4 2.7E-07 5.9E-12 77.7 5.4 45 431-476 2-47 (117)
191 KOG1326 Membrane-associated pr 98.4 9.9E-08 2.2E-12 102.3 3.1 92 264-356 613-704 (1105)
192 cd04045 C2C_Tricalbin-like C2 98.4 3.1E-07 6.7E-12 77.9 5.6 48 429-476 1-52 (120)
193 cd04033 C2_NEDD4_NEDD4L C2 dom 98.4 6E-07 1.3E-11 77.5 5.4 47 430-476 1-57 (133)
194 cd04049 C2_putative_Elicitor-r 98.4 6.1E-07 1.3E-11 76.5 5.4 48 429-476 1-52 (124)
195 cd04037 C2E_Ferlin C2 domain f 98.3 6.4E-07 1.4E-11 76.4 5.3 47 430-476 1-52 (124)
196 cd04043 C2_Munc13_fungal C2 do 98.3 6.9E-07 1.5E-11 76.4 5.2 47 430-476 2-54 (126)
197 cd08676 C2A_Munc13-like C2 dom 98.3 7E-07 1.5E-11 78.8 5.3 50 426-475 25-106 (153)
198 KOG1011 Neurotransmitter relea 98.3 2.9E-06 6.2E-11 87.2 9.4 111 263-374 1124-1241(1283)
199 cd08691 C2_NEDL1-like C2 domai 98.3 1.3E-06 2.8E-11 75.8 5.7 48 430-477 2-65 (137)
200 KOG1013 Synaptic vesicle prote 98.2 1.4E-06 3E-11 83.3 5.5 96 258-353 227-326 (362)
201 KOG0696 Serine/threonine prote 98.2 8.4E-07 1.8E-11 87.5 3.9 48 428-475 179-234 (683)
202 cd08675 C2B_RasGAP C2 domain s 98.2 1.3E-06 2.9E-11 75.8 4.5 46 431-476 1-52 (137)
203 PLN03200 cellulose synthase-in 98.2 9.9E-07 2.2E-11 103.6 4.1 51 427-477 1978-2030(2102)
204 PF00168 C2: C2 domain; Inter 98.2 2E-06 4.3E-11 67.4 4.5 46 431-476 1-52 (85)
205 cd04051 C2_SRC2_like C2 domain 98.2 1.6E-06 3.5E-11 74.0 3.9 46 431-476 2-52 (125)
206 cd08373 C2A_Ferlin C2 domain f 98.2 2E-06 4.3E-11 73.7 4.2 42 435-476 2-44 (127)
207 cd04040 C2D_Tricalbin-like C2 98.1 2.6E-06 5.6E-11 71.5 4.4 46 431-476 1-50 (115)
208 cd04021 C2_E3_ubiquitin_ligase 98.1 5E-06 1.1E-10 71.0 5.5 47 430-476 3-52 (125)
209 KOG1030 Predicted Ca2+-depende 98.0 3.4E-06 7.5E-11 73.7 3.4 40 436-477 18-57 (168)
210 cd04013 C2_SynGAP_like C2 doma 98.0 8.8E-06 1.9E-10 71.0 5.8 49 427-477 9-58 (146)
211 cd08690 C2_Freud-1 C2 domain f 98.0 6.9E-06 1.5E-10 72.4 5.0 48 429-476 4-59 (155)
212 KOG1327 Copine [Signal transdu 97.9 6.6E-05 1.4E-09 77.3 10.5 135 301-474 43-190 (529)
213 cd04048 C2A_Copine C2 domain f 97.9 1.5E-05 3.2E-10 67.5 4.7 43 434-476 5-57 (120)
214 cd08684 C2A_Tac2-N C2 domain f 97.9 9.8E-06 2.1E-10 62.7 3.2 91 267-359 2-95 (103)
215 cd00275 C2_PLC_like C2 domain 97.9 1.9E-05 4.1E-10 67.5 5.4 48 429-476 2-61 (128)
216 cd04047 C2B_Copine C2 domain s 97.8 2.6E-05 5.6E-10 64.9 5.4 42 433-474 4-54 (110)
217 PLN02964 phosphatidylserine de 97.8 2.3E-05 5.1E-10 83.7 5.7 93 258-360 48-141 (644)
218 cd04018 C2C_Ferlin C2 domain t 97.8 1.9E-05 4.1E-10 69.6 3.3 34 444-477 32-65 (151)
219 KOG3532 Predicted protein kina 97.7 0.00013 2.9E-09 75.7 9.2 223 61-295 81-358 (1051)
220 KOG1327 Copine [Signal transdu 97.7 7.2E-05 1.6E-09 77.0 6.3 88 270-358 142-236 (529)
221 PLN03008 Phospholipase D delta 97.6 5.2E-05 1.1E-09 82.1 4.8 33 445-477 75-108 (868)
222 cd08374 C2F_Ferlin C2 domain s 97.6 7.2E-05 1.6E-09 64.2 4.5 44 431-474 2-57 (133)
223 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00013 2.8E-09 61.0 5.6 100 266-366 1-141 (143)
224 KOG1326 Membrane-associated pr 97.6 2.7E-05 5.9E-10 84.1 2.1 185 262-466 204-403 (1105)
225 cd04052 C2B_Tricalbin-like C2 97.6 6.5E-05 1.4E-09 62.6 3.8 34 444-477 10-44 (111)
226 KOG0905 Phosphoinositide 3-kin 97.4 0.00011 2.3E-09 80.8 4.2 63 380-476 1509-1579(1639)
227 KOG2060 Rab3 effector RIM1 and 97.4 0.00011 2.3E-09 71.9 3.5 110 261-371 266-380 (405)
228 cd04019 C2C_MCTP_PRT_plant C2 97.4 0.00013 2.8E-09 64.4 3.2 34 444-477 18-52 (150)
229 cd08689 C2_fungal_Pkc1p C2 dom 97.3 0.00033 7.2E-09 56.8 4.5 45 431-476 1-52 (109)
230 cd00030 C2 C2 domain. The C2 d 97.3 0.00039 8.6E-09 55.3 4.6 45 431-475 1-49 (102)
231 smart00239 C2 Protein kinase C 97.2 0.00057 1.2E-08 54.6 5.3 46 431-476 2-53 (101)
232 PF12416 DUF3668: Cep120 prote 96.9 0.058 1.3E-06 53.7 17.3 200 266-475 2-247 (340)
233 KOG3837 Uncharacterized conser 96.9 0.0009 2E-08 66.1 3.7 127 261-394 364-504 (523)
234 cd08398 C2_PI3K_class_I_alpha 96.5 0.064 1.4E-06 47.6 12.7 90 264-357 8-107 (158)
235 PF10358 NT-C2: N-terminal C2 96.4 0.16 3.5E-06 44.0 14.8 123 263-397 6-139 (143)
236 PF15627 CEP76-C2: CEP76 C2 do 96.2 0.077 1.7E-06 46.6 11.1 128 261-395 6-152 (156)
237 KOG2060 Rab3 effector RIM1 and 95.6 0.016 3.5E-07 57.0 4.7 52 426-477 266-326 (405)
238 KOG1265 Phospholipase C [Lipid 95.4 0.026 5.7E-07 61.0 6.1 90 263-360 702-798 (1189)
239 cd08380 C2_PI3K_like C2 domain 95.4 0.086 1.9E-06 46.7 8.6 93 264-357 8-108 (156)
240 KOG1452 Predicted Rho GTPase-a 95.4 0.037 7.9E-07 53.2 6.2 119 259-393 46-167 (442)
241 cd08693 C2_PI3K_class_I_beta_d 95.4 0.1 2.2E-06 47.1 8.9 91 264-356 8-120 (173)
242 PLN02223 phosphoinositide phos 94.7 0.057 1.2E-06 56.6 5.9 50 427-476 407-469 (537)
243 PLN02952 phosphoinositide phos 94.6 0.052 1.1E-06 58.0 5.7 50 427-476 468-531 (599)
244 cd04012 C2A_PI3K_class_II C2 d 94.3 0.18 3.9E-06 45.4 7.7 93 264-356 8-119 (171)
245 cd08397 C2_PI3K_class_III C2 d 94.0 0.18 3.8E-06 44.8 6.8 74 283-356 28-107 (159)
246 cd08687 C2_PKN-like C2 domain 93.9 0.58 1.3E-05 37.0 8.6 86 283-392 7-92 (98)
247 cd08399 C2_PI3K_class_I_gamma 93.7 0.41 8.9E-06 43.2 8.7 73 265-338 11-88 (178)
248 PLN02222 phosphoinositide phos 93.5 0.13 2.9E-06 54.8 5.9 50 427-476 450-513 (581)
249 PF00792 PI3K_C2: Phosphoinosi 93.2 0.46 9.9E-06 41.3 8.0 69 288-356 5-85 (142)
250 PF15625 CC2D2AN-C2: CC2D2A N- 93.2 1.5 3.3E-05 39.3 11.5 72 283-358 35-108 (168)
251 cd08695 C2_Dock-B C2 domains f 93.0 1.1 2.3E-05 40.9 10.2 57 299-355 53-113 (189)
252 PLN02230 phosphoinositide phos 92.9 0.14 2.9E-06 54.8 4.9 50 427-476 467-530 (598)
253 cd08694 C2_Dock-A C2 domains f 91.1 2.4 5.2E-05 38.7 10.1 56 299-354 53-114 (196)
254 PF14429 DOCK-C2: C2 domain in 90.2 3.4 7.3E-05 37.6 10.5 56 300-355 60-120 (184)
255 PLN02228 Phosphoinositide phos 89.9 0.45 9.7E-06 50.7 5.0 47 428-474 430-491 (567)
256 smart00142 PI3K_C2 Phosphoinos 88.9 2.3 5E-05 34.5 7.5 73 266-338 13-91 (100)
257 cd08679 C2_DOCK180_related C2 84.9 10 0.00023 34.2 10.3 54 301-355 55-115 (178)
258 cd08697 C2_Dock-D C2 domains f 84.4 21 0.00046 32.4 11.9 106 239-355 4-123 (185)
259 PLN02270 phospholipase D alpha 82.2 1.3 2.8E-05 48.8 3.7 33 444-476 44-78 (808)
260 KOG1264 Phospholipase C [Lipid 81.9 2.4 5.2E-05 46.2 5.4 48 427-474 1063-1118(1267)
261 PLN02964 phosphatidylserine de 81.2 1.6 3.6E-05 47.3 4.0 46 426-475 51-97 (644)
262 PF11618 DUF3250: Protein of u 76.2 12 0.00025 30.8 6.8 84 301-393 13-105 (107)
263 KOG0169 Phosphoinositide-speci 75.9 3.6 7.8E-05 44.7 4.5 47 430-476 617-676 (746)
264 cd08696 C2_Dock-C C2 domains f 73.3 11 0.00023 34.2 6.3 56 300-355 55-118 (179)
265 KOG2238 Uncharacterized conser 72.1 1.3 2.9E-05 47.9 0.3 91 72-163 334-428 (795)
266 cd04010 C2B_RasA3 C2 domain se 71.9 1.4 3.1E-05 38.6 0.4 19 458-476 35-53 (148)
267 PF08693 SKG6: Transmembrane a 71.1 3.5 7.6E-05 27.3 2.0 14 22-35 26-39 (40)
268 KOG4092 Mitochondrial F1F0-ATP 67.8 2.3 4.9E-05 33.6 0.7 55 49-103 26-80 (108)
269 KOG1329 Phospholipase D1 [Lipi 66.7 15 0.00032 41.0 6.7 107 285-398 138-245 (887)
270 KOG4027 Uncharacterized conser 52.1 97 0.0021 27.3 7.8 74 282-355 23-110 (187)
271 cd08683 C2_C2cd3 C2 domain fou 51.1 11 0.00023 32.1 1.9 29 446-474 32-64 (143)
272 KOG0694 Serine/threonine prote 48.9 4.5 9.8E-05 43.5 -0.7 96 283-394 26-122 (694)
273 KOG4269 Rac GTPase-activating 46.6 21 0.00045 39.7 3.7 74 258-338 753-828 (1112)
274 PF10206 WRW: Mitochondrial F1 39.4 25 0.00053 28.7 2.3 43 51-93 28-70 (104)
275 cd01324 cbb3_Oxidase_CcoQ Cyto 34.8 18 0.00038 25.1 0.7 19 19-37 19-37 (48)
276 KOG1265 Phospholipase C [Lipid 34.7 38 0.00083 37.8 3.4 51 425-476 699-757 (1189)
277 PF05393 Hum_adeno_E3A: Human 33.7 16 0.00035 28.5 0.4 40 11-50 31-72 (94)
278 PTZ00447 apical membrane antig 32.0 5.1E+02 0.011 26.0 10.2 110 264-391 58-171 (508)
279 PF15627 CEP76-C2: CEP76 C2 do 31.3 72 0.0016 28.2 4.0 51 426-476 6-63 (156)
280 PF07162 B9-C2: Ciliary basal 29.7 4E+02 0.0086 23.6 10.2 79 269-353 7-101 (168)
281 PF05545 FixQ: Cbb3-type cytoc 28.5 20 0.00043 24.8 0.1 18 19-36 18-35 (49)
282 KOG0904 Phosphatidylinositol 3 28.4 1.1E+02 0.0024 34.4 5.6 71 264-337 343-421 (1076)
283 PF14991 MLANA: Protein melan- 28.0 21 0.00046 29.3 0.2 26 10-35 26-51 (118)
284 PLN02352 phospholipase D epsil 27.6 40 0.00087 37.4 2.2 26 448-476 37-63 (758)
285 PF14356 DUF4403: Domain of un 25.3 4.2E+02 0.0091 27.5 9.3 58 177-244 309-366 (427)
286 PF04478 Mid2: Mid2 like cell 24.7 36 0.00078 29.7 1.0 10 27-36 69-78 (154)
287 PF06295 DUF1043: Protein of u 23.5 30 0.00066 29.4 0.3 21 15-35 3-23 (128)
288 COG3887 Predicted signaling pr 22.8 15 0.00033 39.0 -1.9 44 43-86 65-109 (655)
289 PF12416 DUF3668: Cep120 prote 22.6 8E+02 0.017 24.7 11.6 90 262-359 190-296 (340)
290 KOG2419 Phosphatidylserine dec 22.3 24 0.00052 37.8 -0.6 74 263-340 279-357 (975)
291 PRK00081 coaE dephospho-CoA ki 22.2 84 0.0018 28.6 3.0 37 50-97 65-101 (194)
292 COG3105 Uncharacterized protei 22.1 42 0.00091 28.3 0.9 22 3-29 5-26 (138)
293 PRK11677 hypothetical protein; 22.0 42 0.0009 28.8 0.9 22 6-32 3-24 (134)
294 cd08398 C2_PI3K_class_I_alpha 21.5 1.8E+02 0.004 25.6 4.9 46 429-475 8-59 (158)
295 PRK00523 hypothetical protein; 21.0 51 0.0011 24.9 1.0 20 11-30 8-27 (72)
296 cd05137 RasGAP_CLA2_BUD2 CLA2/ 20.8 1.4E+02 0.0031 30.7 4.6 43 345-393 1-44 (395)
297 KOG1452 Predicted Rho GTPase-a 20.6 92 0.002 30.6 2.9 48 427-474 49-102 (442)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.6e-62 Score=520.28 Aligned_cols=433 Identities=28% Similarity=0.508 Sum_probs=358.5
Q ss_pred cchhhhhhhhcccccchhHHHHHHHhheee-eccCCcccccccccccccCCchhHhhhCCCCCCceeCCCCcchHHHHHH
Q 011813 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFIY-SKPNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWLNRF 80 (477)
Q Consensus 2 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~ 80 (477)
|++||++|++||+++-+++.++.++++|.- .++.+|..|+...+.+.+ +++ ..|+|++||||.+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~~~vY~~~~~rv~rnird~v~~~~~~------ek~---------~nd~ESveWLNtf 229 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIRDLVQQELSE------EKL---------ENDYESVEWLNTF 229 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhh---------hcchhHHHHHHHH
Confidence 689999999999966666544444333221 013333334444443322 222 2799999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEEeeeeeec------
Q 011813 81 LSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG------ 153 (477)
Q Consensus 81 l~~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~~~~~~~------ 153 (477)
|+++||.+++.+++.|.+.+++.|.++.|+| |+.+.+.+||||++||||.+||.|+. ..+.+.||+++++..
T Consensus 230 L~KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~ 308 (1227)
T COG5038 230 LQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDV 308 (1227)
T ss_pred HHhheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhh
Confidence 9999999999999999999999999999999 99999999999999999999999996 457889999999952
Q ss_pred ---------CCcEEEEEEE---ee-eEEEEEEEEEEEEEEEEEEEeecCCCCCceeEEEEEcCCCceEEEEEEEeC----
Q 011813 154 ---------NPNIVLVLKL---LS-FRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG---- 216 (477)
Q Consensus 154 ---------~~~i~l~~~~---~~-~~~~v~v~~l~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g---- 216 (477)
+++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|++..+.++|++.|.+||.++|+|
T Consensus 309 t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~ 387 (1227)
T COG5038 309 TATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFF 387 (1227)
T ss_pred hhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCcc
Confidence 4668888866 44 789999999999999999999 99999999999999999999999999986
Q ss_pred -cccccccchhHHHHHHHHHhhhccccCCceeeeecCCcccccccCCceEEEEEEEEcccccccc--ccCCCCcEEEEEE
Q 011813 217 -GDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKD--FLGTSDPYVKLSL 293 (477)
Q Consensus 217 -~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~i~i~~~~~~~~~~~~G~L~V~v~~A~~L~~~d--~~g~~dpyv~v~l 293 (477)
.||+.+|||.+||+++|..++++|+++|+.+++++.+...+....+.|+|.|+|.+|++|...+ ..+..|||+.+..
T Consensus 388 g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~ 467 (1227)
T COG5038 388 GVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTF 467 (1227)
T ss_pred ceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEe
Confidence 5799999999999999999999999999999999988766558899999999999999999988 6799999999997
Q ss_pred cCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceE-EEEeccccc
Q 011813 294 TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE-FTLDLLKHT 372 (477)
Q Consensus 294 ~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~-~~~~l~~~~ 372 (477)
.+... .||++++++.||+|||+|++.+.. .++.|.++|||.+....|+.+|++.++|..+..+.... ....+..
T Consensus 468 ~~r~~--gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~-- 542 (1227)
T COG5038 468 SDRVI--GKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR-- 542 (1227)
T ss_pred ccccC--CccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeec--
Confidence 64433 489999999999999999999975 46799999999999999999999999999988665433 2334332
Q ss_pred CCCCCCCCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccc-cCcceEEEEEEeeeecCCCC-C-CCCc
Q 011813 373 NISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEA-LSGAGLLSVLVQGAEDVEGE-N-HNNP 449 (477)
Q Consensus 373 ~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~L~V~V~~A~~L~~~-~-~~DP 449 (477)
+.+..|+|+.+++|+|..++.....+.. ++. ...+|++.++++++++|... + ...-
T Consensus 543 ------~~k~vGrL~yDl~ffp~~e~k~~~~~s~---------------e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~ 601 (1227)
T COG5038 543 ------NTKNVGRLTYDLRFFPVIEDKKELKGSV---------------EPLEDSNTGILKVTLREVKALDELSSKKDNK 601 (1227)
T ss_pred ------cCccceEEEEeeeeecccCCcccccccc---------------CCcccCCcceeEEEeeccccccCccccccce
Confidence 4788999999999999887754433221 111 22579999999999999873 2 3344
Q ss_pred EEEEEEcCeEeee-eeeeeccCccceecC
Q 011813 450 YAIILYKGDKKRT-KVSFLSLLYTYSLQL 477 (477)
Q Consensus 450 yvkv~l~~~~~kT-kv~~~t~~P~~~~~~ 477 (477)
|++++.+++...| ++.+++.+|.||+|.
T Consensus 602 ~a~l~~~~keV~st~~~k~t~~~~wn~~~ 630 (1227)
T COG5038 602 SAELYTNAKEVYSTGKLKFTNHPSWNLQY 630 (1227)
T ss_pred eEEEEecceEEeccceeeeccCCceeeec
Confidence 4999999988855 889999999999873
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9e-27 Score=237.43 Aligned_cols=182 Identities=34% Similarity=0.489 Sum_probs=158.9
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEee--cCCCCeEEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQVF 335 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~ 335 (477)
..+.....|.|+|++|++|+..|..|.+||||++++.+++..+.+|++.++|+||.|||+|.|.+. +.....|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 356677899999999999999997788999999999999888899999999999999999999965 245789999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCcccccccccccccCCCC
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~ 415 (477)
|+|++++|++||++.++|..+.......+|.++....... ....|+|.++++|.|
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p--------------------- 295 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLP--------------------- 295 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeec---------------------
Confidence 9999999999999999999998887788899887653332 222389999999998
Q ss_pred CCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCcccee
Q 011813 416 NDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSL 475 (477)
Q Consensus 416 ~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~ 475 (477)
..|+|+|.|.+|+||.. .+.+|||||+++.. +++||.++++++||.||.
T Consensus 296 -----------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~ne 352 (421)
T KOG1028|consen 296 -----------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNE 352 (421)
T ss_pred -----------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccc
Confidence 68999999999999985 56899999999843 455899999999999984
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=5.6e-22 Score=167.85 Aligned_cols=119 Identities=21% Similarity=0.338 Sum_probs=101.9
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCC-CCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
.|.|+|+|++|++++..+ .|++||||++.+++++. +|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~---kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVY---ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEE---EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 79999999999987653 8998865 89999999999999753 468999999999999
Q ss_pred CCCeeEEEEEECc-ccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 342 GHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 342 ~d~~lG~~~v~L~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+|++||++.+++. .+..++....|++|... .+....|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777778889988642 124578999999998
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=9.1e-21 Score=162.83 Aligned_cols=118 Identities=33% Similarity=0.452 Sum_probs=100.8
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec-----CCCCeEEEEEEecCCC
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-----PESQILQLQVFDWDKV 340 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~-----~~~~~L~v~V~d~d~~ 340 (477)
++|+|++|+||+.++..|.+||||++++++++ ++|+++++|.||+|||+|.|.+.. .....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 489999999999999999999976 3567899999999999
Q ss_pred CCCCeeEEEEEECcccC--CCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 341 GGHDRLGMQLVPLKLLT--PHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
++|++||++.++|+++. .+.....|++|..... ...+.+|+|++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~----~~~~~~Gei~l~~ 125 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG----KDDKERGEIEVDI 125 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC----CCccccceEEEEe
Confidence 89999999999999987 5566778888864211 2356789999987
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=2.5e-20 Score=158.88 Aligned_cols=120 Identities=33% Similarity=0.513 Sum_probs=106.0
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|++|+..|..|.+||||++++++.. .++|++++++.||.|||+|.|.+.+. .+.|.|+|||++..++|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 79999999999999988999999999997632 36899999999999999999998764 5789999999999999999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 346 lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
||++.++++++..+...+.|++|... .+.+..|+|++.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 99999999999998889999988532 12467899999999976
No 6
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.85 E-value=1.3e-20 Score=159.98 Aligned_cols=117 Identities=32% Similarity=0.444 Sum_probs=100.8
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||+|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999998743 4788764 5899999999999998766678999999998765
Q ss_pred CCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
|++||++.+++.++..+.....|+++.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999876666678887753 24688999999987
No 7
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.85 E-value=8e-21 Score=158.34 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=90.6
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC-cccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~-~~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V~ 335 (477)
.....|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.++. .....|.++||
T Consensus 9 Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 9 YDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred EcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4556799999999999998 3 36699999999975 34456799999999999999999999874 34678999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~ 367 (477)
|+|+++++++||++.++++++..+...++|.+
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred eCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999999876666666654
No 8
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=3.6e-20 Score=156.74 Aligned_cols=115 Identities=34% Similarity=0.513 Sum_probs=103.4
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
+++|+|++|++|+..+..+.+||||++++++.. ++|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 479999999999999988999999999997643 58999999999999999999998766789999999999988999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
+||++.++|+++..+.....|++|.+ ..|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~-----------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED-----------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC-----------CCcEEEEEEEec
Confidence 99999999999998888999998842 269999999884
No 9
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.84 E-value=3.4e-20 Score=156.60 Aligned_cols=109 Identities=26% Similarity=0.359 Sum_probs=94.0
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcC----cccCceeeeeeCCCCCCeeeeEEEEEeecC---CCCeEEEEEEec
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDW 337 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~----~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~ 337 (477)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999988 49999999999842 333456899999999999999999999742 346799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCC
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~ 374 (477)
|..++|++||++.++|+++..++....|++|.+.+++
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 9888899999999999999999889999999776554
No 10
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.84 E-value=4.6e-20 Score=160.14 Aligned_cols=121 Identities=30% Similarity=0.436 Sum_probs=103.5
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecC
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d 338 (477)
.....|.|+|+|++|++|+..+..|.+||||+++++... ++|+++++|.||.|||+|.|.+.+...+.|.++|||+|
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 456789999999999999999988999999999997654 58999999999999999999998776788999999999
Q ss_pred CCCCCCeeEEEEEECcccCCC-----CceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 339 KVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
..++|++||++.+++.++... .....++.+ +....|+|++++++
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 999999999999999998752 222333433 25678999999986
No 11
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=7.5e-20 Score=155.50 Aligned_cols=116 Identities=34% Similarity=0.478 Sum_probs=101.7
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||+|||+|.|.+.....+.|.|+|||+|.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433456999999999999999999998765567899999999988 8999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 346 lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
||++.+++.++..+.....|+++. ....|+|++++..
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999988889999874 2357999888764
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=8.6e-20 Score=155.49 Aligned_cols=116 Identities=27% Similarity=0.401 Sum_probs=99.3
Q ss_pred EEEEEEEEccc---cccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 265 ILHVKVVRASK---LLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 265 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
.|+|+|++|+| |+.+|..|.+||||++++++++. +|++++++.||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~---rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV---RTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe---EcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 88899999999999999987654 8999999999999999999997654 58999999999873
Q ss_pred ------CCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEE
Q 011813 342 ------GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (477)
Q Consensus 342 ------~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (477)
+|++||++.++|..+..+.....|++|... + ..+.+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999998888899988642 1 123567788875
No 13
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=1.7e-19 Score=157.31 Aligned_cols=112 Identities=27% Similarity=0.381 Sum_probs=97.0
Q ss_pred CceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE-ec
Q 011813 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~-d~ 337 (477)
..|.|.|+|++|+||+..+ ..|.+||||++++.++. ..++||+++++|+||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999999864 56889999999997653 34679999999999999999999998 56789999999 67
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCC
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~ 374 (477)
+..+++++||++.++|+++..+.....|++|.+...+
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 8888999999999999999888778889998765433
No 14
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=2.3e-19 Score=153.51 Aligned_cols=122 Identities=31% Similarity=0.516 Sum_probs=101.4
Q ss_pred ceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 3467999999999873 23469999999999999999999987 44689999999999988
Q ss_pred CCCeeEEEEEECcccCCCCceE-EEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 342 GHDRLGMQLVPLKLLTPHETKE-FTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+|++||++.++|.++..+.... .+..+.. +++..|+|+++++|+|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--------~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLR--------NGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhc--------CCccceEEEEEEEeCC
Confidence 9999999999999998765543 3333321 3667899999999987
No 15
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.7e-19 Score=155.09 Aligned_cols=121 Identities=32% Similarity=0.467 Sum_probs=101.8
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC---CCeEEEEEEecCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---SQILQLQVFDWDKVG 341 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~---~~~L~v~V~d~d~~~ 341 (477)
.|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||+|.|.+.+.. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998754 48999999999999999999987543 367999999999886
Q ss_pred -CCCeeEEEEEECcccC-CCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 342 -GHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 342 -~d~~lG~~~v~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
+|++||++.++++++. .+.....|++|.+.. ..+..+|+|+|++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999987 455667888876421 1245799999998764
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=2.5e-19 Score=157.98 Aligned_cols=127 Identities=25% Similarity=0.310 Sum_probs=104.7
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCC-CCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ |.||+|||+|.|.+.++....+.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999999743 48888866 69999999999999876667899999999988899
Q ss_pred CeeEEEEEECcccCCC----CceEEEEecccccCC-CCCCCCccceEEEEEEEEEe
Q 011813 344 DRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNI-SDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~l~l~l~y~p 394 (477)
++||++.++|+++..+ .....|++|...... .+.+..+..|+|+|+++|.+
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999999998743 345788888654211 01123567899999999986
No 17
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=2.3e-19 Score=154.45 Aligned_cols=123 Identities=30% Similarity=0.453 Sum_probs=103.6
Q ss_pred eEEEEEEEEccccccccc--cCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 264 GILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
|+|+|+|++|++|+..+. .+.+||||++++++.. .+|+++++|.||.|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 7899999999997543 58999999999999999999998766789999999999988
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+|++||++.+++.++.. ......|++|..... ..+....|+|+|+++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc---CccccccceEEEEEEC
Confidence 99999999999999873 333567887754311 1235679999999976
No 18
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.81 E-value=8.8e-20 Score=157.80 Aligned_cols=100 Identities=45% Similarity=0.746 Sum_probs=91.6
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 340 (477)
...|.|+|+|++|.||..+|..+++||||.+.+++++. +|+++.+++||+|||.|.|.+.++ ...|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999998876 899999999999999999999986 57899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 011813 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~~~~ 364 (477)
++||++|.++|+|..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999876655444
No 19
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=2.6e-19 Score=153.13 Aligned_cols=122 Identities=30% Similarity=0.485 Sum_probs=104.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
.|+|+|++|++|+..+..+.+||||++++++.. .+|+++++|.||.|||+|.|.+.+.....|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997644 48999999999999999999998766678999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
+||++.++|+++..+.....|+++.+.... ....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877667788888654322 233577899999876
No 20
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=1.3e-19 Score=154.53 Aligned_cols=105 Identities=31% Similarity=0.369 Sum_probs=92.5
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEe-e--cCCCCeEEEEEEec
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQVFDW 337 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v-~--~~~~~~L~v~V~d~ 337 (477)
.|.|.|+|++|++|+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999997643 3457999999999999999999987 3 33467899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|..+++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987777778765
No 21
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=4.6e-19 Score=150.89 Aligned_cols=119 Identities=22% Similarity=0.277 Sum_probs=100.7
Q ss_pred EEEEEEEcccccccc-ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 266 LHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 266 L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
|+|+|++|+||+..+ ..|.+||||+++++.+. .++|+++++|.||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 789999999999874 45789999999997543 36899999999999999999999753 468999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+||++.++++++..+...+.|++|.+. . ...+..|+||+++++
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~-~----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPV-D----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEcc-C----CCCcccEEEEEEEEC
Confidence 999999999999888778889988653 1 124468999999864
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.81 E-value=7.1e-19 Score=150.90 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=101.7
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+.......+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999997643 3578874 68999999999998755444679999999999999
Q ss_pred CCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
|++||++.++|+++..+...+.|+++.+.. ..+.+..|+|+|+++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888888999886531 123567899999999986
No 23
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=7.5e-19 Score=150.86 Aligned_cols=122 Identities=25% Similarity=0.400 Sum_probs=103.0
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|.|+|++|+||+. ..|.+||||+++++.. ...++|+++++|.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 5689999999999742 234699999999999999999999854 46789999999999989999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 346 lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
||++.+++.++..+.....|+++..... .+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEecc
Confidence 9999999999998777778888764311 135679999999999873
No 24
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=4.9e-19 Score=150.81 Aligned_cols=115 Identities=34% Similarity=0.500 Sum_probs=100.7
Q ss_pred eEEEEEEEEccccccccc------cCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEec
Q 011813 264 GILHVKVVRASKLLKKDF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 337 (477)
|+|+|+|++|++|+..+. .|.+||||++++++. .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 368999999999863 35899999999999999999999876678999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+.. +|++||++.+++.++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998877778899874 2367999999875
No 25
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.80 E-value=3.3e-19 Score=152.72 Aligned_cols=110 Identities=34% Similarity=0.407 Sum_probs=95.0
Q ss_pred ccCCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~ 333 (477)
.....+.|.|+|++|+||+..+.. |.+||||++++.+.. ..+++|+++++|.||+|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 345568999999999999999875 899999999997543 345799999999999999999999863 345689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..+++++||++.++|.++..+.....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877777778775
No 26
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.80 E-value=2e-18 Score=148.21 Aligned_cols=123 Identities=25% Similarity=0.364 Sum_probs=102.0
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
|.++|+|+|++|++|+..+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998764 4899999999999999999988764 67899999999876
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+|++||++.+++.++......++++. ... ...+++..|+|.+++++.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~~~l~--~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRTLPLR--KRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceEEEcc--cCC---CCCCCCCCCEEEEEEEEcc
Confidence 58999999999998765555554443 211 1235788999999998875
No 27
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=6.9e-19 Score=150.68 Aligned_cols=110 Identities=31% Similarity=0.412 Sum_probs=95.8
Q ss_pred ccCCceEEEEEEEEccccccccc-cCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~ 333 (477)
.....|.|.|+|++|+||+..+. .|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45677999999999999998875 4789999999997643 345799999999999999999999864 235689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..+++++||++.++|.++...+....|++|
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999999999999999988888888876
No 28
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.79 E-value=9.3e-19 Score=149.89 Aligned_cols=112 Identities=30% Similarity=0.552 Sum_probs=98.1
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~ 335 (477)
......|.|.|+|++|++|+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 10 EYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred EECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 34566799999999999999999889999999999975544567999999999999999999998643 3568999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
|++.+++|++||++.++|+++..++....|++|.
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999999999887888898864
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=2e-18 Score=146.92 Aligned_cols=113 Identities=25% Similarity=0.345 Sum_probs=95.7
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|+||+.. .+||||+++++++ ..+|+++++|.||+|||+|.|.+.+.....|.++|||+|.. +|++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~---~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNY---KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF 73 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCc---cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence 89999999999887 7899999999864 35999999999999999999998776678899999999976 7899
Q ss_pred eEEEEEECcccCCCC-----ceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 346 LGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 346 lG~~~v~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
||++.++|+++..+. ....|++|.... +.+.+|+|+|++.|
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~ 119 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWF 119 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEe
Confidence 999999999987532 245788875531 24678999999987
No 30
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=2.6e-18 Score=149.01 Aligned_cols=123 Identities=35% Similarity=0.516 Sum_probs=101.3
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcc----cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 340 (477)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|+++++|.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997641 2246899999999999999999998653 56899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCc------eEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 341 GGHDRLGMQLVPLKLLTPHET------KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
++|++||++.+++.++..+.. ...|++|.+. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999886532 3466666532 11356799999999984
No 31
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.78 E-value=2.1e-18 Score=148.33 Aligned_cols=111 Identities=28% Similarity=0.366 Sum_probs=93.7
Q ss_pred ccCCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEE-ee--cCCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V 334 (477)
.+...+.|+|+|++|+||+..+.. +.+||||++++.+...+++||+++++|.||+|||+|.|. +. +.....|.++|
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V 90 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV 90 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence 455678999999999999998876 889999999998665556799999999999999999993 43 22345799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCC--CceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~--~~~~~~~~l~ 369 (477)
||+|.+++|++||++.++|+++... +....|++++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999999999755 5566887764
No 32
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=4.4e-18 Score=151.55 Aligned_cols=123 Identities=32% Similarity=0.439 Sum_probs=103.0
Q ss_pred ceEEEEEEEEcccccccc------------------------------ccCCCCcEEEEEEcCcccCceeeeeeCCCCCC
Q 011813 263 VGILHVKVVRASKLLKKD------------------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP 312 (477)
.|.|.|+|.+|++|+.+| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999887 246789999999986543 589999999999
Q ss_pred eeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 313 ~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
+|||+|.|.+... .+.|.|+|||+|..+ +++||++.++++++..+...+.|+++.... ....+..|+|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN----GKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC----CCCCCCCCEEEEEEEE
Confidence 9999999998754 468999999999774 689999999999999888888999986531 1124457899999998
Q ss_pred E
Q 011813 393 V 393 (477)
Q Consensus 393 ~ 393 (477)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
No 33
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.78 E-value=3.9e-18 Score=144.87 Aligned_cols=118 Identities=34% Similarity=0.518 Sum_probs=99.8
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. ...+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 4899999999999999999998653 57899999999988899
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
++||++.+++.++..+.. .|+.+... ....+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999986654 45555432 1134579999999876
No 34
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.78 E-value=1.3e-18 Score=148.24 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=93.7
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc---cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v 332 (477)
......+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 3456678999999999999998888899999999998765 346899999999999999999999864 34679999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCC-ceEEEEe
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLD 367 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~-~~~~~~~ 367 (477)
+|||++..+++++||++.++|+++.... ....|++
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999996553 3445554
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.78 E-value=2.6e-18 Score=150.73 Aligned_cols=124 Identities=28% Similarity=0.361 Sum_probs=97.7
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEee---------------cCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK---------------EPES 327 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~---------------~~~~ 327 (477)
.|+|+|++|+||+. ..|.+||||++++.+. +...++|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 4689999999999764 223568999999999999999999985 1223
Q ss_pred CeEEEEEEecCCCCCCCeeEEEEEECcccCCC-CceEEEEecccccCCCC-----CCCCccceEEEEEE
Q 011813 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISD-----PKDMKQRGKIVVEL 390 (477)
Q Consensus 328 ~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 390 (477)
..|.++|||++..++|++||++.++|.++..+ .....|++|.+.....+ ..+....|.|++++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999999987 56678888865533221 12244567777764
No 36
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.78 E-value=2.5e-18 Score=147.18 Aligned_cols=110 Identities=35% Similarity=0.456 Sum_probs=96.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d 336 (477)
.....|.|+|+|++|+||+..+..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 4456789999999999999999889999999999976655567999999999999999999998642 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
++.+++|++||++.++|+++..+.....|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999887777888876
No 37
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.77 E-value=1.3e-18 Score=145.87 Aligned_cols=95 Identities=37% Similarity=0.574 Sum_probs=84.7
Q ss_pred eEEEEEEEEcccccccccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC---CCCeEEEEEEecCC
Q 011813 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~ 339 (477)
|+|+|+|++|++|+..+.. +.+||||++++.+.....++|+++++|.||+|||+|.|.+... ....|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999976544457999999999999999999987643 35689999999999
Q ss_pred CCCCCeeEEEEEECcccCC
Q 011813 340 VGGHDRLGMQLVPLKLLTP 358 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~ 358 (477)
.++|++||++.+++.++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999973
No 38
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.2e-18 Score=178.03 Aligned_cols=174 Identities=22% Similarity=0.241 Sum_probs=143.3
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
..|.|+|.+|+||+..+..|.+||||.+.++.+.. .+|.++.+|+.|.|.|+|+|.++.. -+.|.|.|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 56899999999999999999999999999997654 6899999999999999999999754 467999999999 9999
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCcc
Q 011813 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEE 423 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (477)
+.||.+.+.-+++......+.|+.|.+ .++ +.+.+|+|||++.+.+..
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~--------------------------- 128 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAI--------------------------- 128 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEecccc---------------------------
Confidence 999999999999887777778887754 333 478999999999998722
Q ss_pred ccCcceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeE----eeeeeeeeccCccceec
Q 011813 424 ALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDK----KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 424 ~~~~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~----~kTkv~~~t~~P~~~~~ 476 (477)
+..-+...+.+++++.+ ++.+||||++++.+.. ++|+++++|.+|+|++.
T Consensus 129 ---~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev 184 (800)
T KOG2059|consen 129 ---QSSGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEV 184 (800)
T ss_pred ---CCCcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhh
Confidence 12223334445555543 6789999999986644 49999999999999954
No 39
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=3.6e-18 Score=146.58 Aligned_cols=110 Identities=28% Similarity=0.335 Sum_probs=92.2
Q ss_pred ccCCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~ 333 (477)
.....+.|.|+|++|+||+..+.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 445668999999999999998875 899999999998654 3456999999999999999999998642 35689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCC---ceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~---~~~~~~~l 368 (477)
|||++.++++++||++.++|+++.... ....|++|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999999999999999986543 33456554
No 40
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=1.1e-17 Score=143.67 Aligned_cols=118 Identities=31% Similarity=0.434 Sum_probs=100.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
.|+|+|++|++|+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998755344569999999999999999999998755678999999999888999
Q ss_pred eeEEEEEECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 345 RLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 345 ~lG~~~v~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+||++.++|.++.. +.....|+++. ..|++++.++|.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 34567888763 2699999999864
No 41
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.76 E-value=1.2e-17 Score=145.16 Aligned_cols=120 Identities=25% Similarity=0.437 Sum_probs=98.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC---------CCCeEEEEEE
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQVF 335 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---------~~~~L~v~V~ 335 (477)
.|+|+|++|++|+.+|..|.+||||+++++++. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 489999999999999999999999999998643 5899999999999999999975432 1257999999
Q ss_pred ecCCCCCCCeeEEEEE-ECcccC---CCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 336 DWDKVGGHDRLGMQLV-PLKLLT---PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v-~L~~l~---~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
|+|..++|++||++.+ ++..+. .......|++|.+ .+...|+|++++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 444443 2356668888753 25579999999999873
No 42
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.76 E-value=9.7e-18 Score=142.87 Aligned_cols=118 Identities=25% Similarity=0.428 Sum_probs=98.9
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|.|+|++|++|+..+..|.+||||++++++.. ..+|+++++|.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997543 35899999999999999999998643 4789999999999999999
Q ss_pred eEEEEEECcccCCC-CceEEEEecccccCCCCCCCCccceEEEEEEE
Q 011813 346 LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (477)
Q Consensus 346 lG~~~v~L~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (477)
||++.++++++..+ ...+.|++|.+. + ......|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-~----~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-D----PDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-C----CCCccccEEEEEEE
Confidence 99999999888753 335678887542 1 12457899999875
No 43
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1.2e-17 Score=144.50 Aligned_cols=116 Identities=28% Similarity=0.440 Sum_probs=100.4
Q ss_pred ceEEEEEEEEcccccccccc----------CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEE
Q 011813 263 VGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQL 332 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v 332 (477)
.|.|+|+|++|++|+..+.. +.+||||+++++++.. .+|+++++|.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 48999999999999988752 6799999999986543 589999999999999999999963 468999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCC--CCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTP--HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
.|||++..++|++||++.++|.++.. +.....|++|. +.|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999887 56678888873 4699999999875
No 44
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=1.4e-17 Score=143.26 Aligned_cols=117 Identities=32% Similarity=0.460 Sum_probs=100.2
Q ss_pred EEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCCCCCCeeE
Q 011813 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGHDRLG 347 (477)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~~~d~~lG 347 (477)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||+|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 57899999999998654 4899999999999999999999754 4678999999999998999999
Q ss_pred EEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccc
Q 011813 348 MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (477)
Q Consensus 348 ~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (477)
++.++++++..+.....|++|... ......|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988888888888532 12335799999999999543
No 45
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.76 E-value=6.2e-18 Score=144.62 Aligned_cols=111 Identities=27% Similarity=0.344 Sum_probs=97.3
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEE-eec--CCCCeEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQV 334 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~-v~~--~~~~~L~v~V 334 (477)
......+.|.|+|++|+||+..+..|.+||||++.+.+.+.++++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 355667899999999999999998889999999999777666789999887 999999999998 542 2467899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++.++++++||++.++|+++..+.....|++|.
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99999999999999999999999888888888874
No 46
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.76 E-value=8.3e-18 Score=143.51 Aligned_cols=108 Identities=29% Similarity=0.415 Sum_probs=92.5
Q ss_pred eeecCCcccccccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec-CC
Q 011813 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PE 326 (477)
Q Consensus 248 ~i~i~~~~~~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~-~~ 326 (477)
..|++++..+......|.|+|+|++|++|+. +..+.+||||+++++++ .++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 4577777665668889999999999999984 66788999999999865 4599999999999999999997533 34
Q ss_pred CCeEEEEEEecCCCCCCCeeEEEEEECcccCCC
Q 011813 327 SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (477)
Q Consensus 327 ~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~ 359 (477)
.+.|+|+|||+|..++|++||++.++|.....+
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 679999999999999999999999999976643
No 47
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.75 E-value=1.1e-17 Score=143.45 Aligned_cols=111 Identities=38% Similarity=0.556 Sum_probs=96.0
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec---CCCCeEEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v~V~ 335 (477)
.....+.|+|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++||
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~ 90 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVL 90 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEE
Confidence 455678999999999999999988999999999996544455799999999999999999997432 23567999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
|++..+++++||++.++++++..+.....|++|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999999999999999999999888888888874
No 48
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.75 E-value=8.3e-18 Score=139.98 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=81.5
Q ss_pred eEEEEEEEEcccccccccc----CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEecC
Q 011813 264 GILHVKVVRASKLLKKDFL----GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~----g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~d 338 (477)
|+|.|+|++|++|+..+.. +.+||||+++++.+. +||++++++.||+|||.|.|.+.+.. ...|.++|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999997543 48999999999999999999986543 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 011813 339 KVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999987653
No 49
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=5.3e-18 Score=143.78 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=88.7
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEecC
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~d 338 (477)
..+.|.|+|++|+||+..+ .|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4589999999999999988 7899999999998653 23568999999999999999999986422 357899999999
Q ss_pred CCC-CCCeeEEEEEECcccCCCCceEEEEec
Q 011813 339 KVG-GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 339 ~~~-~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
... ++++||++.++|.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 765 478999999999999876666666643
No 50
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.75 E-value=2.4e-17 Score=140.85 Aligned_cols=119 Identities=35% Similarity=0.548 Sum_probs=96.3
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC--C
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG--H 343 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~--d 343 (477)
|+|+|++|++|+..+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7999999999999998899999999999753 34689999999999999999999965 6799999999998765 5
Q ss_pred CeeEEEEEECcccCCCC-ceEEEEecccccCCCCCCCCccceEEEEEEE
Q 011813 344 DRLGMQLVPLKLLTPHE-TKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (477)
++||++.+++.++.... ....|+++... .+ ...+...|+|.++++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~-~~--~~~~~~~G~v~~~~~ 123 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKL-KK--SDNLSVRGKIVVSLS 123 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecC-CC--CCCceEeeEEEEEeC
Confidence 79999999999987544 33567666332 11 123566899988763
No 51
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.74 E-value=1.3e-17 Score=142.44 Aligned_cols=110 Identities=31% Similarity=0.413 Sum_probs=93.7
Q ss_pred ccCCceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCccc--CceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~ 333 (477)
.+...|.|.|+|++|+||+..+ ..+.+||||++++.+... ..++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4556799999999999999988 678999999999965432 457899999999999999999998642 35689999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..+++++||++.++|+++..+.....|++|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999999999999999999877666777754
No 52
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=2.2e-17 Score=141.99 Aligned_cols=110 Identities=30% Similarity=0.332 Sum_probs=94.6
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+.. .....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 455678999999999999999988999999999997543 345799999999999999999999863 2356899999
Q ss_pred EecCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 335 FDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 335 ~d~d~~--~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
||++.. ++|++||++.++|.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777788775
No 53
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.73 E-value=3.8e-17 Score=139.62 Aligned_cols=112 Identities=28% Similarity=0.371 Sum_probs=96.9
Q ss_pred cccCCceEEEEEEEEcccccccc-ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
..+...+.|.|+|++|++|+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 34566789999999999999988 678899999999975544457899999999999999999998643 245799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++..+++++||++.++|+++........|++|.
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999888999999999999999888888888863
No 54
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=2.4e-17 Score=136.81 Aligned_cols=99 Identities=30% Similarity=0.438 Sum_probs=87.1
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
.|.|+|++|++|+..+..+.+||||+++++++ .++|+++++|.||.|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 38999999999999988899999999999874 3589999999999999999999988777899999999985 78
Q ss_pred eeEEEEEECcccCCCC--ceEEEEecc
Q 011813 345 RLGMQLVPLKLLTPHE--TKEFTLDLL 369 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~--~~~~~~~l~ 369 (477)
+||++.++|.++..+. ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999987553 456788774
No 55
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.73 E-value=1.1e-16 Score=140.67 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=98.5
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCcccCceeeeeeCCCCCCeeeeEEEEEeecCC--------CCeEEEE
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------SQILQLQ 333 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--------~~~L~v~ 333 (477)
|.|+|....+.+|+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 445555444444778777789999999997 323445679999999999999999999996431 4679999
Q ss_pred EEecCCC-CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 334 VFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 334 V~d~d~~-~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
|||++.+ ++|++||++.++|+.+..+.....+++|... .....|+|+++++.-.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999986 5799999999999999888777778888642 2456789999998764
No 56
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=3.7e-17 Score=140.10 Aligned_cols=109 Identities=29% Similarity=0.433 Sum_probs=89.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC---CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~ 333 (477)
.+...|.|+|+|++|++|+..+..+.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 345568999999999999999888999999999997632 2456899999999999999999986432 35789999
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|||++..++|++||++.++|++... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999999899999999999998332 233466665
No 57
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.72 E-value=1.1e-16 Score=137.68 Aligned_cols=115 Identities=32% Similarity=0.511 Sum_probs=94.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC----
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV---- 340 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~---- 340 (477)
.|+|+|++|++|+..|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ...|.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 5899999999999999999988654 46899999999852
Q ss_pred -------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 341 -------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 341 -------~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
+.|++||++.+++.++... ...|+.|.+.. .....+|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4689999999999988644 45677775432 2356799999864
No 58
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=1.1e-16 Score=135.17 Aligned_cols=114 Identities=41% Similarity=0.632 Sum_probs=98.1
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|++|+..+..+.+||||++++.+.. .++|+++.++.||.|||+|.|.+.+...+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997533 3689999999999999999999986666889999999998889999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEE
Q 011813 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (477)
Q Consensus 346 lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (477)
||++.+++.++..+.....|+++... ++...|.|.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-------g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-------GGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-------CCccCceEEc
Confidence 99999999999988888899988542 3556676653
No 59
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=5.9e-17 Score=142.59 Aligned_cols=106 Identities=37% Similarity=0.552 Sum_probs=90.6
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCccc--------------------------CceeeeeeCCCCC
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--------------------------PWKKTTVKKKNLN 311 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~--------------------------~~~kT~v~~~t~n 311 (477)
....+.+.|.|+|++|++|...|..|.+||||++++.+... ..++|+++++|.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 45678999999999999999999999999999999965321 2368999999999
Q ss_pred CeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 011813 312 PEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (477)
Q Consensus 312 P~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l 368 (477)
|.|||+|.|.+.+...+.|.|+|||++ |++||++.++++++.. .....|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 8899999999999983 345666654
No 60
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.71 E-value=2.6e-17 Score=142.53 Aligned_cols=110 Identities=25% Similarity=0.276 Sum_probs=90.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....+.|.|+|++|+||+..+..|.+||||++++.++. ..++||+++++|+||+|||+|.|.++. .....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 445568899999999999999988999999999996543 335689999999999999999999864 3467899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||+|..+++++||++.++... .+...++|.++..
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 999999999999999997664 3444555655543
No 61
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.71 E-value=4.7e-17 Score=145.46 Aligned_cols=110 Identities=34% Similarity=0.336 Sum_probs=93.6
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEee---cCCCCeEEEEE
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK---EPESQILQLQV 334 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V 334 (477)
..+.|.|.|+|++|+||+..+..+.+||||++++.+. ....++|+++++|.||.|||+|.|.+. +.....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 4478999999999999999998899999999998543 234579999999999999999999853 22346799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++.+++|++||++.+++.++........|+++.
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 99999999999999999999998776677777653
No 62
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.71 E-value=5.3e-17 Score=139.16 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=96.1
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecCC----CCeEEEEEEecCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~----~~~L~v~V~d~d~ 339 (477)
.|+|+|++|++|+..+..+.+||||++++++. ..++|++.. ++.||.|||.|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS--HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCC--cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 48999999999999888899999999999872 234888875 6899999999999997653 6789999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCc-----eEEEEecccccCCCCCCCCccceEEEE
Q 011813 340 VGGHDRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVV 388 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (477)
.++|++||++.++|.++..+.. ...|+++... +++.+|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999986543 3677777642 3778899874
No 63
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=5.4e-17 Score=135.87 Aligned_cols=101 Identities=30% Similarity=0.410 Sum_probs=86.5
Q ss_pred EEEEEEEccccccccc-cCCCCcEEEEEEcCcccCceeeeeeCCCCCCee-eeEEEEEeecC--CCCeEEEEEEecCCCC
Q 011813 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVKEP--ESQILQLQVFDWDKVG 341 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~W-nE~f~f~v~~~--~~~~L~v~V~d~d~~~ 341 (477)
|.|+|++|++|+..+. .+.+||||++++++. .++|++++++.||.| ||+|.|.+... ....|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998884 688999999999863 468999999999999 99999998753 2468999999999999
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEecc
Q 011813 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLL 369 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~---~~~~~~~~~l~ 369 (477)
+|++||++.+++.++.. +.....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999986 33456677663
No 64
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=6.7e-17 Score=138.24 Aligned_cols=120 Identities=29% Similarity=0.421 Sum_probs=95.4
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~ 344 (477)
+|+|+|++|++|+..|..|.+||||++++++... ..+|+++++|.||+|||+|.|.+..+..+.|.|+|||+|..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4799999999999999889999999999987643 357888889999999999999987666789999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 345 ~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+||++.+++++... ..++++.-+.+ +....|.++.+-++.|
T Consensus 80 ~iG~~~i~l~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFF-SKHRATCGLPP--------TYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeeccccc-chHHHhccCCC--------cccccCceecCcccCc
Confidence 99999999997754 22222322211 2336677777766655
No 65
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=7.5e-17 Score=138.03 Aligned_cols=104 Identities=36% Similarity=0.555 Sum_probs=90.4
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeC-CCCCCeeeeEEEEEeecC---CCCeEEEEEEecCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~ 339 (477)
|.|.|+|++|++|+..+..+.+||||+++++++. ++|++.+ ++.||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888899999999997643 4777776 489999999999999875 25789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
.++|++||++.+++.++..+.....|+.+.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999987777777777644
No 66
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.70 E-value=4.5e-17 Score=141.03 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=90.5
Q ss_pred ccCCceEEEEEEEEccccccccc--cCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v 332 (477)
.....|.|.|+|++|+||+..|. .+.+||||++++.++ +..++||+++++++||+|||+|.|.++. .....|.|
T Consensus 10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 34556889999999999999883 355899999999875 3346799999999999999999999874 33678999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+|||+|.++++++||++.+++.. .+...++|.++..
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999999999999999999975 4445556666543
No 67
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=1.7e-16 Score=133.61 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=82.6
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
+|.|.|+|++|++|+.++ ..||||++++++++ .+|++.++ .||.|||+|.|.+.+.. ..|.|+|||+|.+ .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-C
Confidence 378999999999997654 45999999998754 48888877 49999999999997644 4599999999854 8
Q ss_pred CCeeEEEEEECcccCCCCce--EEEEecccc
Q 011813 343 HDRLGMQLVPLKLLTPHETK--EFTLDLLKH 371 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~~~~--~~~~~l~~~ 371 (477)
||+||++.++|+++..+... ..|++|...
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 99999999999998866544 677777654
No 68
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.69 E-value=7e-16 Score=133.54 Aligned_cols=118 Identities=24% Similarity=0.374 Sum_probs=95.0
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCccc----------CceeeeeeCCCCCCee-eeEEEEEeecCCCCeEEEE
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----------PWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQ 333 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~----------~~~kT~v~~~t~nP~W-nE~f~f~v~~~~~~~L~v~ 333 (477)
+..|++++|+||+ ++..|++||||++++.+... +.++|+++++|+||+| ||+|.|.+. ..+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4578999999998 67789999999999975432 3579999999999999 999999985 35689999
Q ss_pred EEecCCCCC---CCeeEEEEEECcccCCCC---ceEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 334 VFDWDKVGG---HDRLGMQLVPLKLLTPHE---TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 334 V~d~d~~~~---d~~lG~~~v~L~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
|||++..++ +++||++.+++.++..+. ....++++.++. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999875443 799999999999997543 355777776542 2467889998875
No 69
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.69 E-value=1.9e-16 Score=138.51 Aligned_cols=93 Identities=45% Similarity=0.708 Sum_probs=84.6
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
.|.|+|+|++|++|+..+. +.+||||+++++++. ++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 4899999999999998887 889999999998654 5899999999999999999999876 6789999999999999
Q ss_pred CCeeEEEEEECcccCCCC
Q 011813 343 HDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~~ 360 (477)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987553
No 70
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=7.2e-17 Score=139.93 Aligned_cols=110 Identities=35% Similarity=0.423 Sum_probs=91.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|.|+|++|++|+..+..|.+||||++++.+. ....++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 34567999999999999999998899999999999753 23457999999999999999999998643 356899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||+|..++|++||++.+++.. .++....|+++..
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999988899999999999986 3344556776654
No 71
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.68 E-value=2.7e-16 Score=136.30 Aligned_cols=101 Identities=35% Similarity=0.511 Sum_probs=87.3
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc----cCceeeeeeCCCCCCeeeeEEEEEeecC----CCCeE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~kT~v~~~t~nP~WnE~f~f~v~~~----~~~~L 330 (477)
.....+.|+|+|++|++|+..+..+.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 344568899999999999998888999999999997543 3457999999999999999999998652 35689
Q ss_pred EEEEEecCCCCCCCeeEEEEEECcccCCC
Q 011813 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (477)
Q Consensus 331 ~v~V~d~d~~~~d~~lG~~~v~L~~l~~~ 359 (477)
.++|||++..++|++||++.++|+++..-
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999998743
No 72
>PLN03008 Phospholipase D delta
Probab=99.68 E-value=4.6e-16 Score=165.20 Aligned_cols=130 Identities=28% Similarity=0.456 Sum_probs=109.1
Q ss_pred CceEEEEEEEEccccccccc------------------------------------------cCCCCcEEEEEEcCcccC
Q 011813 262 PVGILHVKVVRASKLLKKDF------------------------------------------LGTSDPYVKLSLTGEKLP 299 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~l~~~~~~ 299 (477)
-.|.|.++|.+|++|+.+|. .+++||||++.+++++
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r-- 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT-- 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--
Confidence 35888999999998875221 2467999999997654
Q ss_pred ceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCC
Q 011813 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379 (477)
Q Consensus 300 ~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~ 379 (477)
..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+||+++..++..+.|+++..... +.
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 358999999999999999999998754 58999999999986 5899999999999999999999999977543 23
Q ss_pred CccceEEEEEEEEEecccCc
Q 011813 380 MKQRGKIVVELTYVPFKEDS 399 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~ 399 (477)
.+..|+|++++.|.|+..+.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 55678999999999988864
No 73
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.8e-16 Score=137.30 Aligned_cols=93 Identities=35% Similarity=0.592 Sum_probs=81.0
Q ss_pred EEEEEEEEccccccccccC--------------CCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC-CCCe
Q 011813 265 ILHVKVVRASKLLKKDFLG--------------TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQI 329 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~-~~~~ 329 (477)
.|.|+|++|++|+.+|..+ .+||||++.+++.+ .+|++++++.||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 68999999999765 3899999999999999999997543 2568
Q ss_pred EEEEEEecCCCCCCCeeEEEEEECcccCCCC
Q 011813 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 330 L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
|.++|||+|..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987643
No 74
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=5.3e-16 Score=131.83 Aligned_cols=103 Identities=27% Similarity=0.463 Sum_probs=89.6
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
|.|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999997542 35899999999999999999988654 47899999999999999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccc
Q 011813 344 DRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
++||++.+++.++..+ ..+.|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 5566666543
No 75
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.67 E-value=4.1e-16 Score=135.59 Aligned_cols=106 Identities=30% Similarity=0.399 Sum_probs=91.5
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCc-ccCceeeeeeCCCCCCeeeeEEEEEeecC---------------CCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQI 329 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---------------~~~~ 329 (477)
|+|+|++|++|+.+ ..+.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 6789999999999842 22346999999999999999999998765 4568
Q ss_pred EEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEeccccc
Q 011813 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372 (477)
Q Consensus 330 L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~ 372 (477)
|.|+|||++..+++++||++.+++.++........|++|.+.-
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999998777778888887653
No 76
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=3.6e-16 Score=136.04 Aligned_cols=111 Identities=22% Similarity=0.320 Sum_probs=91.5
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc---cCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v 332 (477)
..+...+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3566779999999999999999988999999999997532 235699999999999999999999873 34678999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
+|||++..+++++||++.+++.....+ ..++|.++.
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 999999999999999999988754422 234566554
No 77
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.67 E-value=1.6e-16 Score=138.33 Aligned_cols=108 Identities=31% Similarity=0.401 Sum_probs=89.5
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEE
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~ 335 (477)
....+.|.|+|++|++|+..|..|.+||||++++.+.. ...++|+++++|.||.|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 44568899999999999999988999999999996432 2356899999999999999999998632 3457999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
|+|.++++++||++.+++.. .+.....|.++.
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 99999999999999999988 344455666653
No 78
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=5.4e-16 Score=134.96 Aligned_cols=109 Identities=30% Similarity=0.405 Sum_probs=89.9
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC--cccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 4556799999999999999988889999999999843 23345689999999999999999999763 2356899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++.+++|++||++.+++.+. +.....|.++.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 9999999999999999999886 33344555554
No 79
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.66 E-value=3.4e-16 Score=133.75 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=88.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC--cccCceeeeeeCCCC-CCeeeeEEEEEeecCC-CCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNL-NPEWNENFKLVVKEPE-SQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~kT~v~~~t~-nP~WnE~f~f~v~~~~-~~~L~v~V 334 (477)
.....|.|+|+|++|+||++.+..+.+||||++++.. .+..++||+++++|. ||.|||+|.|.++... ...|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 4456799999999999999876567779999999853 344568999999996 6999999999997433 45788999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++..+++++||++.++.+... +...++|.++.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 99999999999999999997642 23345666654
No 80
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=7.1e-16 Score=129.26 Aligned_cols=101 Identities=26% Similarity=0.336 Sum_probs=85.6
Q ss_pred ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCC-
Q 011813 281 FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH- 359 (477)
Q Consensus 281 ~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~- 359 (477)
.+|.+||||+++++++. .++|++++++.||.|||+|.|.+.+.....|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998643 35899999999999999999999876677899999999988 899999999999998543
Q ss_pred CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
.....|++|.. ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~----------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG----------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC----------CCCCEEEEEEEEec
Confidence 34567887742 35799999999998
No 81
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.65 E-value=2.1e-16 Score=137.22 Aligned_cols=109 Identities=35% Similarity=0.506 Sum_probs=89.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|+|+|++|++|++.+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 45567999999999999999998899999999999643 33457899999999999999999998632 235699999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||++..++|++||++.+++.. .+.....|.++.
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~ 121 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPNA--DGQGREHWNEML 121 (134)
T ss_pred EECCCCCCCceeEEEEECCCC--CCchHHHHHHHH
Confidence 999999999999999999873 333445565554
No 82
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1.1e-15 Score=128.19 Aligned_cols=97 Identities=28% Similarity=0.374 Sum_probs=82.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC----CCeEEEEEEecCCC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKV 340 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~----~~~L~v~V~d~d~~ 340 (477)
.|+|+|++|++|+ .+.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.+
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 5899999999998 4789999999999754 48999999999999999999975432 46899999999998
Q ss_pred CCCCeeEEEEEECcccCCCCc---eEEEEec
Q 011813 341 GGHDRLGMQLVPLKLLTPHET---KEFTLDL 368 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~---~~~~~~l 368 (477)
++|++||++.++|+++..+.. ...|++|
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 899999999999999976533 3456665
No 83
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.65 E-value=2.4e-15 Score=128.80 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=93.9
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
..|+|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555788999999999865 34699999999999999999999863 57899999999999999
Q ss_pred CeeEEEEEECcccCCCCc-----eEEEEecccccCCCCCCCCccceEEEEEE
Q 011813 344 DRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (477)
++||++.++|.++..... ...|+++.+..+ ......|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999875432 234676654211 0346789998875
No 84
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.65 E-value=7.8e-16 Score=130.94 Aligned_cols=100 Identities=31% Similarity=0.442 Sum_probs=86.8
Q ss_pred EEEccccccccccCCCCcEEEEEEcCcc----cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC----CC
Q 011813 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK----VG 341 (477)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~----~~ 341 (477)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||+|. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999988999999999998754 124699999999999999999998764456789999999997 78
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 342 GHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 342 ~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
+|++||++.+++.++..+.....+++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999999887777888773
No 85
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=1.4e-15 Score=130.01 Aligned_cols=109 Identities=37% Similarity=0.499 Sum_probs=91.9
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeec---CCCCeEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQL 332 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v 332 (477)
..+...+.|+|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.... .....+.+
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~ 88 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRL 88 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEE
Confidence 345556899999999999999888889999999998542 2345799999999999999999996322 23568999
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~ 367 (477)
+|||++.. .+++||++.++|+++..++.+++++.
T Consensus 89 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 89 LVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99999988 88999999999999999888888765
No 86
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.65 E-value=5.9e-16 Score=134.73 Aligned_cols=110 Identities=35% Similarity=0.493 Sum_probs=90.0
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC--cccCceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~--~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V 334 (477)
.....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4566799999999999999999889999999999964 233456899999999999999999998632 234799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||++.+++|++||++.+++... +.....|.++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 9999999999999999999764 334455655543
No 87
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.64 E-value=2.6e-16 Score=136.92 Aligned_cols=111 Identities=27% Similarity=0.289 Sum_probs=92.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....+.|.|+|++|+||+..+ .+.+||||++++.+. ...+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 3455689999999999999988 788999999998754 2245689999999999999999999863 3356899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||++..+++++||++.++......+...++|.++..
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 999999999999999999776666666667776654
No 88
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.64 E-value=1e-15 Score=132.95 Aligned_cols=110 Identities=26% Similarity=0.399 Sum_probs=86.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeec--CCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V 334 (477)
.....|.|+|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+.. .....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 34556899999999999999998899999999998432 2345789999999999999999999853 2344799999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||+|..++|++||++.+.......+ ....|..+.
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l~ 122 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRML 122 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCch-HHHHHHHHH
Confidence 9999999999999998765333321 234455443
No 89
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.63 E-value=4.9e-15 Score=123.21 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=75.6
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEec------
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW------ 337 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~------ 337 (477)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 458999999997642 345799999999999999999999963 67999999998
Q ss_pred -CCCCCCCeeEEEEEECc--ccCCCCceEEEEe
Q 011813 338 -DKVGGHDRLGMQLVPLK--LLTPHETKEFTLD 367 (477)
Q Consensus 338 -d~~~~d~~lG~~~v~L~--~l~~~~~~~~~~~ 367 (477)
|..+.|+++|++.+.|+ .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45678999988887765 4444444444443
No 90
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=7.9e-15 Score=127.63 Aligned_cols=126 Identities=16% Similarity=0.205 Sum_probs=99.8
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|+|+|..... ...+.|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 4577999999999998865 8999999997654 5999999999999999999975432 467999998765322
Q ss_pred ----CCCeeEEEEEECcccCCCCceEEEEecccccCCC---CCCCCccceEEEEEEEEEec
Q 011813 342 ----GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS---DPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 342 ----~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~---~~~~~~~~G~l~l~l~y~p~ 395 (477)
++++||.+.||+.++..+...+.|+++....... ........+.|+++++|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 5789999999999999988889999987542110 00012455799999999984
No 91
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.62 E-value=1e-14 Score=123.33 Aligned_cols=114 Identities=26% Similarity=0.353 Sum_probs=87.9
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEEEecCCCCCC
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGGH 343 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V~d~d~~~~d 343 (477)
|+|+|++|++|+.. +.+||||+++++++. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358999888 99999999999987532 34678888888766556
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
..+|.+ ++..+..+...+.|++|.+.- ......|+|++++.|
T Consensus 76 ~~~g~v--~l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKV--ALSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEE--EecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 666655 455555566778899885431 124578999999987
No 92
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=5.2e-15 Score=127.89 Aligned_cols=106 Identities=35% Similarity=0.501 Sum_probs=91.1
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecC-CCCeEEEEEEecCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDWDKV 340 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~-~~~~L~v~V~d~d~~ 340 (477)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22357899999999999999999998653 256899999999988
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
+++++||++.++|.++... ....|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999854 6678888753
No 93
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.60 E-value=1.2e-15 Score=132.25 Aligned_cols=110 Identities=36% Similarity=0.416 Sum_probs=92.4
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V 334 (477)
.....+.|.|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 34456899999999999999888889999999999764 233568999999999999999999987542 57899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~ 370 (477)
||++..+++++||++.+++++ .+.....|+++..
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 999988899999999999999 4555667777654
No 94
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.59 E-value=3.1e-14 Score=122.36 Aligned_cols=119 Identities=30% Similarity=0.416 Sum_probs=93.9
Q ss_pred EEEEEEEEcccccccc--ccCCCCcEEEEEEcCcc---cCceeeeeeCCCC-CCeeeeEEEEEeecCCCCeEEEEEEecC
Q 011813 265 ILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEK---LPWKKTTVKKKNL-NPEWNENFKLVVKEPESQILQLQVFDWD 338 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~-nP~WnE~f~f~v~~~~~~~L~v~V~d~d 338 (477)
.|+|+|++|++|+..+ ..+.+||||++++.+.. ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 3457899887765 9999999999998666567999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 339 ~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
.. +|++||++.++++++..+. .++++.... ......|.|.+.++.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~-----~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK-----GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC-----CCCCcceeEEEEEEE
Confidence 87 8999999999999996542 345554320 113456888888765
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.59 E-value=1e-14 Score=121.97 Aligned_cols=96 Identities=32% Similarity=0.533 Sum_probs=79.7
Q ss_pred EEEEEccccccccccCCCCcEEEEEEcCcc---cCceeeeeeCCCCCCeeeeEEEEEeecCC----CCeEEEEEEecCCC
Q 011813 268 VKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKV 340 (477)
Q Consensus 268 V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~---~~~~kT~v~~~t~nP~WnE~f~f~v~~~~----~~~L~v~V~d~d~~ 340 (477)
+-.++|++|+..|..|.+||||++++.++. ...++|++++++.||+|| +|.|.+.+.. .+.|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 345699999999999999999999987642 234799999999999999 6888764322 57899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 011813 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (477)
Q Consensus 341 ~~d~~lG~~~v~L~~l~~~~~~~~ 364 (477)
++|++||++.++++++..+...++
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceE
Confidence 999999999999999986655443
No 96
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-15 Score=147.56 Aligned_cols=108 Identities=32% Similarity=0.485 Sum_probs=91.7
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecC-CCCeEEEEEEec
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDW 337 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~-~~~~L~v~V~d~ 337 (477)
.....|+|+|.+|+||.++|.+|.|||||++.+-++. ..+++|++++.|+||+|||+|.|.+... ....|.++|||+
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3457799999999999999999999999999997653 3457899999999999999999998633 367899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
|+.+++|++|..++.+++|.... ..-|+.++
T Consensus 257 DrTsRNDFMGslSFgisEl~K~p-~~GWyKlL 287 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKAP-VDGWYKLL 287 (683)
T ss_pred cccccccccceecccHHHHhhcc-hhhHHHHh
Confidence 99999999999999999997642 34455544
No 97
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.54 E-value=2.1e-14 Score=165.85 Aligned_cols=123 Identities=21% Similarity=0.371 Sum_probs=105.2
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEec
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDW 337 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~ 337 (477)
+..-.|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|.|.+.++. ++.++++|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 4456899999999999998 4468999999999997533 48999999999999999999988765 46799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceE---EEEEEEEEe
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK---IVVELTYVP 394 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~y~p 394 (477)
|.+++| .+|.+.+++.++..++....|+++.+ +++..|+ |++++.|.+
T Consensus 2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCC-CCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 988554 89999999999999888889998864 2456777 999999865
No 98
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.51 E-value=5.7e-14 Score=111.03 Aligned_cols=85 Identities=36% Similarity=0.603 Sum_probs=76.4
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|+|+|++|+||+..+..+.+||||++.+.+.....++|+++.++.+|.|||+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998754445799999999999999999999877676779999999999988999
Q ss_pred eEEEE
Q 011813 346 LGMQL 350 (477)
Q Consensus 346 lG~~~ 350 (477)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 99
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.50 E-value=1.5e-12 Score=140.80 Aligned_cols=172 Identities=23% Similarity=0.328 Sum_probs=123.5
Q ss_pred ccchhHHHHHHHHHhhhccccCCce-------eee---ecCC----cccccccCCceEEEEEEEEccccccccccCCCCc
Q 011813 222 IPGLYQFIQKCITKYVAGIYIWPQT-------YEI---PILD----ASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDP 287 (477)
Q Consensus 222 iP~l~~~i~~~i~~~i~~~~v~P~~-------~~i---~i~~----~~~~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dp 287 (477)
++....-+.+.|.......++.|.+ ++. |+.- .+......++|.++|.|..|.+|......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 3444455567777777777777765 222 3332 1222367899999999999999998778899999
Q ss_pred EEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCC---ceEE
Q 011813 288 YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEF 364 (477)
Q Consensus 288 yv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~---~~~~ 364 (477)
|+++.+.+. .+++|-....+.||.|||..+..+... .+.+.++++|++..+.|..+|++.++..++.... ....
T Consensus 735 ya~v~~n~~--~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNL--VKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEecce--eEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 999999863 346888888999999999999998764 5779999999999999999999999999886521 1122
Q ss_pred EEecccccCCCCCCCCccceEEEEEEEEEecc
Q 011813 365 TLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (477)
Q Consensus 365 ~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (477)
+..-......-...+...+|++.+.++|+|..
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeec
Confidence 22111111110111356789999999999843
No 100
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=8.3e-15 Score=138.49 Aligned_cols=187 Identities=28% Similarity=0.363 Sum_probs=143.8
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEE--eecC-CCCeEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV--VKEP-ESQILQLQ 333 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~--v~~~-~~~~L~v~ 333 (477)
.+.....+..++.+|++|++++.++..|||++..+++. +..+.+|++..+++||.|||+-... ..+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 34456778999999999999999999999999999764 3334578888999999999765443 3332 25678899
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccC--CCCCCCCccceEEEEEEEEEecccCccccccccccccc
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN--ISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSR 411 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~ 411 (477)
|.|.+.+..++++|+..+++..+.+.+.+.+...|.+.+. ..+..+.+.+|++.+++.|-.
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s----------------- 230 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS----------------- 230 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc-----------------
Confidence 9999999999999999999999987765443332222222 222223478899999998854
Q ss_pred CCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceecC
Q 011813 412 KGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 412 ~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
...-|.|++.+|.+|.. ++.+||||+.++.. .++||++.|+|.+|.|+.++
T Consensus 231 ---------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~ 289 (362)
T KOG1013|consen 231 ---------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEF 289 (362)
T ss_pred ---------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccc
Confidence 45678899999999965 68999999999853 34499999999999999763
No 101
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=3.2e-12 Score=109.32 Aligned_cols=95 Identities=32% Similarity=0.340 Sum_probs=80.5
Q ss_pred EEEEEEEccccccc--cccC--CCCcEEEEEEcCcccCceeeeeeCCCCC--CeeeeEEEEEeecC--------------
Q 011813 266 LHVKVVRASKLLKK--DFLG--TSDPYVKLSLTGEKLPWKKTTVKKKNLN--PEWNENFKLVVKEP-------------- 325 (477)
Q Consensus 266 L~V~v~~A~~L~~~--d~~g--~~dpyv~v~l~~~~~~~~kT~v~~~t~n--P~WnE~f~f~v~~~-------------- 325 (477)
|+|.|.+|++++.. +..| .+||||+..+.+....+++|.++.+++| |.||+.|.|.+.-+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 79999999996643 3356 4999999999886556689999999999 99999999987641
Q ss_pred ---------CCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCC
Q 011813 326 ---------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 326 ---------~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
....|.++|||+|.+++|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24689999999999999999999999999887653
No 102
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.1e-12 Score=132.93 Aligned_cols=123 Identities=27% Similarity=0.426 Sum_probs=98.8
Q ss_pred cCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCC
Q 011813 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 260 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
......++++|++|.+|..+|..|++||||...++..+ ++|+++...+||+|||.|+|..++. +..+.+.|||+|.
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~ 366 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDN 366 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcc
Confidence 45567899999999999999999999999999998654 4899999999999999999999874 5789999999874
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 340 ~-----------~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
. ..|||+|+..+.+..+...-.. |+.|.++.+ +....|-|++.++.-
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsgemdv--wynlekrtd-----ksavsgairlhisve 424 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDV--WYNLEKRTD-----KSAVSGAIRLHISVE 424 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccchhh--hcchhhccc-----hhhccceEEEEEEEE
Confidence 3 2589999999999988765444 444444322 356778776666543
No 103
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.35 E-value=1.5e-12 Score=108.68 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=55.3
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCCCCCCcEEEEEEcC----eE
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG----DK 459 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~----~~ 459 (477)
|+|+++++|.| ..+.|+|+|++|+||+..+.+|||||+++.. ++
T Consensus 1 ~~l~fsL~Y~~--------------------------------~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k 48 (118)
T cd08677 1 PKLHYSLSYDK--------------------------------QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKE 48 (118)
T ss_pred CeEEEEEEEcC--------------------------------cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccE
Confidence 67999999998 6899999999999999777899999999964 46
Q ss_pred eeeeeeeeccCccceecC
Q 011813 460 KRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 460 ~kTkv~~~t~~P~~~~~~ 477 (477)
+||+++++|+||.||+.|
T Consensus 49 ~kT~v~rktlnPvfnE~f 66 (118)
T cd08677 49 AQTALKKLALHTQWEEEL 66 (118)
T ss_pred EEcceecCCCCCccccEE
Confidence 699999999999999653
No 104
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.33 E-value=9.9e-12 Score=100.86 Aligned_cols=95 Identities=45% Similarity=0.667 Sum_probs=81.7
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|.|+|++|++|......+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 68999999999987765688999999998652234689999999999999999999987657899999999998777899
Q ss_pred eEEEEEECcccCCCC
Q 011813 346 LGMQLVPLKLLTPHE 360 (477)
Q Consensus 346 lG~~~v~L~~l~~~~ 360 (477)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987654
No 105
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.29 E-value=2.6e-11 Score=97.96 Aligned_cols=100 Identities=44% Similarity=0.637 Sum_probs=83.4
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCe
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~ 345 (477)
|.|+|++|++|......+..+|||.+.+.+. ...+|+++.++.||.|||.|.|.+.......+.++|||.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 5789999999988666678999999999862 23589999999999999999999976456789999999998877899
Q ss_pred eEEEEEECcccC-CCCceEEEEe
Q 011813 346 LGMQLVPLKLLT-PHETKEFTLD 367 (477)
Q Consensus 346 lG~~~v~L~~l~-~~~~~~~~~~ 367 (477)
+|.+.+++.++. .......|++
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceec
Confidence 999999999988 4444444443
No 106
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.3e-11 Score=124.64 Aligned_cols=97 Identities=39% Similarity=0.542 Sum_probs=84.7
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEee--cCCCCeEEEEE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQV 334 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V 334 (477)
...+.|.|+|.|++|++|+..+..+.+||||++++... +..+++|.+++++.||+|||+|.|.++ ....-.+.|+|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 45567999999999999999999999999999998544 355689999999999999999999887 33355799999
Q ss_pred EecCCCCCCCeeEEEEEECcc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKL 355 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~ 355 (477)
||+|.++++++||++.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 999999999999999887765
No 107
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.20 E-value=1.3e-10 Score=93.41 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=73.8
Q ss_pred HHHHHHHhh-hHH-HHHHHHHHHHHHHHHhhc-cCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEEeeeeeec
Q 011813 78 NRFLSDMWP-YLD-KAICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG 153 (477)
Q Consensus 78 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~~-~p~~~i~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~~~~~~~ 153 (477)
|.+++|++- +++ +++.+.+++.++..|++. +|+| +++|++++++||+.+|.|+++|+.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 677888765 333 688999999999999984 6998 99999999999999999999999875 445699999999999
Q ss_pred CCcEEEEEEE
Q 011813 154 NPNIVLVLKL 163 (477)
Q Consensus 154 ~~~i~l~~~~ 163 (477)
+..+++++++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999998875
No 108
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.20 E-value=3.4e-11 Score=104.34 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=54.2
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~-----~~~DPyvkv~l~~ 457 (477)
.|+|.++|+|.| .++.|.|+|++|+||+.. +.+|||||+++..
T Consensus 1 ~Gel~~sL~Y~~--------------------------------~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~ 48 (138)
T cd08407 1 TGEVLLSISYLP--------------------------------AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH 48 (138)
T ss_pred CCEEEEEEEEeC--------------------------------CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence 499999999998 678999999999999752 4589999999865
Q ss_pred -----eEeeeeeeeeccCccceecC
Q 011813 458 -----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 458 -----~~~kTkv~~~t~~P~~~~~~ 477 (477)
+++||+++++|+||.||+.|
T Consensus 49 ~~~k~~kkkT~v~k~t~nPvfNE~f 73 (138)
T cd08407 49 QNAKLKKKQTKRAKHKINPVWNEMI 73 (138)
T ss_pred CCcccceeccceeeCCCCCccccEE
Confidence 24589999999999999643
No 109
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.19 E-value=2.6e-11 Score=105.07 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=53.5
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--- 457 (477)
|+|.++|+|.| ..+.|.|+|++|+||+. ++.+||||++++..
T Consensus 2 G~i~~sL~Y~~--------------------------------~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~ 49 (136)
T cd08406 2 GEILLSLSYLP--------------------------------TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGR 49 (136)
T ss_pred cEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCc
Confidence 99999999998 56789999999999986 46899999999953
Q ss_pred --eEeeeeeeeeccCccceec
Q 011813 458 --DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 --~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||+.
T Consensus 50 ~~~k~kT~v~k~t~nP~~nE~ 70 (136)
T cd08406 50 KISKKKTSVKRDDTNPIFNEA 70 (136)
T ss_pred cccccCCccccCCCCCeecee
Confidence 2558999999999999965
No 110
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.16 E-value=7.3e-11 Score=100.98 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~- 457 (477)
.|+|+++++|.+ ..+.|.|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~ 48 (125)
T cd04029 1 SGEILFSLSYDY--------------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC
Confidence 499999999987 67899999999999975 36899999999952
Q ss_pred ----eEeeeeeeeeccCccceec
Q 011813 458 ----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ----~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||..
T Consensus 49 ~~~~~~~kT~v~~~t~nP~wnE~ 71 (125)
T cd04029 49 KSRQSKRKTSIKRNTTNPVYNET 71 (125)
T ss_pred CccccceEeeeeeCCCCCcccce
Confidence 3569999999999999964
No 111
>PLN02223 phosphoinositide phospholipase C
Probab=99.15 E-value=2.4e-10 Score=117.53 Aligned_cols=98 Identities=27% Similarity=0.452 Sum_probs=81.9
Q ss_pred ceEEEEEEEEcccccc-----ccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE
Q 011813 263 VGILHVKVVRASKLLK-----KDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~-----~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~ 335 (477)
...|.|+|+.|++++. .+.....||||+|.+.+- ....++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998751 122356799999999653 223467888889999999999999999887778999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCC
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
|+|..+.|+++|++.+|+..+..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999875
No 112
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.14 E-value=7.5e-11 Score=100.94 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcC-
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKG- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~-~~~DPyvkv~l~~- 457 (477)
+|+|++++.|.+ ..+.|.|+|++|+||+. . +.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~ 48 (125)
T cd08393 1 QGSVQFALDYDP--------------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC
Confidence 699999999987 56889999999999986 2 6899999999952
Q ss_pred ----eEeeeeeeeeccCccceec
Q 011813 458 ----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ----~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||..
T Consensus 49 ~~~~~~~kT~v~~~t~nP~~nE~ 71 (125)
T cd08393 49 KSNRGKRKTSVKKKTLNPVFNET 71 (125)
T ss_pred CCccccccCccCcCCCCCccCce
Confidence 3469999999999999953
No 113
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.11 E-value=1.5e-10 Score=101.09 Aligned_cols=64 Identities=28% Similarity=0.259 Sum_probs=54.2
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l 455 (477)
....|+|++++.|. .+.|.|+|++|+||+. ++.+|||||+++
T Consensus 14 ~~~~G~l~lsl~y~----------------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L 59 (146)
T cd04028 14 SPSMGDIQLGLYDK----------------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYL 59 (146)
T ss_pred CCCcceEEEEEEeC----------------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEE
Confidence 55789999999983 4689999999999975 357999999999
Q ss_pred cC-----eEeeeeeeeeccCccceecC
Q 011813 456 KG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 456 ~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
.. .++||+++++|+||.||+.|
T Consensus 60 lp~~~~~~k~KT~v~kktlnPvfNE~F 86 (146)
T cd04028 60 LEGKKCIAKKKTKIARKTLDPLYQQQL 86 (146)
T ss_pred ECCCccccceeceecCCCCCCccCCeE
Confidence 54 25699999999999999754
No 114
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.11 E-value=1.5e-10 Score=99.31 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=54.2
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcC-
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKG- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~-~~~DPyvkv~l~~- 457 (477)
.|+|++++.|.+ ..+.|.|.|++|+||+. . +.+||||++++..
T Consensus 1 ~G~i~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~ 48 (128)
T cd08392 1 TGEIEFALHYNF--------------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD 48 (128)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC
Confidence 499999999997 57899999999999975 2 7899999999963
Q ss_pred ----eEeeeeeeeeccCccceec
Q 011813 458 ----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ----~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||+.
T Consensus 49 ~~~~~k~kT~v~~~t~nPvfNE~ 71 (128)
T cd08392 49 KSHNSKRKTAVKKGTVNPVFNET 71 (128)
T ss_pred CcccceeecccccCCCCCccceE
Confidence 3669999999999999965
No 115
>PLN02270 phospholipase D alpha
Probab=99.10 E-value=8.9e-10 Score=117.87 Aligned_cols=130 Identities=22% Similarity=0.363 Sum_probs=104.1
Q ss_pred CceEEEEEEEEcccccccc------------------ccCCCCcEEEEEEcCcccCceeeeeeCCC-CCCeeeeEEEEEe
Q 011813 262 PVGILHVKVVRASKLLKKD------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVV 322 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-~nP~WnE~f~f~v 322 (477)
-.|.|.|+|.+|++|+..+ ..+.+||||.+.+++.+. .||+++.+. .||.|||+|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEee
Confidence 3599999999999998531 125789999999997654 699999875 6999999999998
Q ss_pred ecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCc
Q 011813 323 KEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS 399 (477)
Q Consensus 323 ~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~ 399 (477)
.... ..+.|.|.|.|.++. .+||.+.+|..++..++..+.|+++...- .+..+..-.|++++.|+|...+.
T Consensus 84 ah~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 84 AHMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred ccCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccCc
Confidence 7654 689999999998765 59999999999999998888999886531 11122334899999999977764
No 116
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.10 E-value=2.4e-10 Score=98.24 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=54.6
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEc--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYK-- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~-~~~DPyvkv~l~-- 456 (477)
+|+|.+++.|.+ ..+.|+|+|++|+||+. . +.+||||++++.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~ 49 (128)
T cd08388 2 LGTLFFSLRYNS--------------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE 49 (128)
T ss_pred CeEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence 699999999987 57899999999999986 2 679999999985
Q ss_pred -CeEeeeeeeeeccCccceecC
Q 011813 457 -GDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 457 -~~~~kTkv~~~t~~P~~~~~~ 477 (477)
.+++||+++++|+||.||+.+
T Consensus 50 ~~~~~kT~v~~~t~nP~wnE~F 71 (128)
T cd08388 50 KEHKVKTRVLRKTRNPVYDETF 71 (128)
T ss_pred cCceeeccEEcCCCCCceeeEE
Confidence 345599999999999999653
No 117
>PLN02952 phosphoinositide phospholipase C
Probab=99.09 E-value=1.4e-09 Score=114.25 Aligned_cols=104 Identities=28% Similarity=0.394 Sum_probs=84.0
Q ss_pred ceEEEEEEEEccccccc------cccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEE
Q 011813 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~------d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 334 (477)
...|.|+|+.|.+++.. +.....||||++.+-+- ...+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 11234599999998642 22356899999999999999999999877767899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
||+|..+.|+++|++.+|+..+..+.. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988899999999999999998863 55554
No 118
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.09 E-value=2.1e-10 Score=102.63 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=58.3
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--- 456 (477)
+|+|.++++|.|...+... .......|.|+|+|++|+||+. .+.+||||++++.
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--------------------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~ 60 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--------------------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60 (162)
T ss_pred CceEEEEEEecCccccccc--------------------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCC
Confidence 5999999999995433111 1122378999999999999986 4689999999983
Q ss_pred --CeEeeeeeeeeccCccceec
Q 011813 457 --GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 --~~~~kTkv~~~t~~P~~~~~ 476 (477)
..++||+++++|+||.||..
T Consensus 61 ~~~~~~kT~vi~~t~nP~WnE~ 82 (162)
T cd04020 61 SKKSKQKTPVVKKSVNPVWNHT 82 (162)
T ss_pred CCCcceeCCccCCCCCCCCCCE
Confidence 35669999999999999954
No 119
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.07 E-value=2.2e-10 Score=97.60 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=43.0
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceecC
Q 011813 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
.+.|+|.|++|+||+. ++.+||||++++.+ .++||+++++|+||.||..|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F 68 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEML 68 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEE
Confidence 3679999999999986 56899999999973 46699999999999999653
No 120
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.06 E-value=3.7e-10 Score=96.82 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=55.3
Q ss_pred cceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--
Q 011813 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK-- 456 (477)
Q Consensus 382 ~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~-- 456 (477)
+.|+|.+++.|.+ ..+.|+|+|++|+||+. .+.+||||++++.
T Consensus 1 ~~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (127)
T cd04030 1 PLGRIQLTIRYSS--------------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD 48 (127)
T ss_pred CCeEEEEEEEEeC--------------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence 4799999999987 57899999999999986 4689999999996
Q ss_pred ---CeEeeeeeeeeccCccceec
Q 011813 457 ---GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ---~~~~kTkv~~~t~~P~~~~~ 476 (477)
..++||+++++|.||.||..
T Consensus 49 ~~~~~~~kT~v~~~~~nP~wne~ 71 (127)
T cd04030 49 KSKSTRRKTSVKKDNLNPVFDET 71 (127)
T ss_pred CCCCceEecccccCCCCCEECeE
Confidence 35669999999999999953
No 121
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.03 E-value=4.1e-10 Score=97.92 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC--CCCCCcEEEEEEcC---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYKG--- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~--- 457 (477)
.|+|+++++|.| ..+.|.|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~ 48 (137)
T cd08409 1 LGDIQISLTYNP--------------------------------TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK 48 (137)
T ss_pred CcEEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE
Confidence 499999999997 57889999999999975 46799999999864
Q ss_pred --eEeeeeeeeeccCccceec
Q 011813 458 --DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 --~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++|+||.||+.
T Consensus 49 ~~~~~kT~v~~~~~nP~fnE~ 69 (137)
T cd08409 49 VVKTKKTEVVDGAASPSFNES 69 (137)
T ss_pred EeeeeecccEeCCCCCcccce
Confidence 3569999999999999964
No 122
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.03 E-value=4.4e-10 Score=96.23 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=50.1
Q ss_pred EEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEcC----
Q 011813 385 KIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKG---- 457 (477)
Q Consensus 385 ~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~~---~~~DPyvkv~l~~---- 457 (477)
+|+++|+|.| .+|+|+|+|.+|+||+.. +.+||||||++-+
T Consensus 2 el~~sL~Y~p--------------------------------~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~ 49 (135)
T cd08692 2 ELQLGTCFQA--------------------------------VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL 49 (135)
T ss_pred eEEEEeeecC--------------------------------cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc
Confidence 7999999998 789999999999999873 5679999998742
Q ss_pred -eEeeeeeeeecc-Ccccee
Q 011813 458 -DKKRTKVSFLSL-LYTYSL 475 (477)
Q Consensus 458 -~~~kTkv~~~t~-~P~~~~ 475 (477)
+|+||+++++|+ +|.||+
T Consensus 50 ~~KkKT~v~k~t~~~P~fNE 69 (135)
T cd08692 50 LYKKKTRLVKSSNGQVKWGE 69 (135)
T ss_pred ceeecCccEECCCCCceecc
Confidence 566999999995 588884
No 123
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.02 E-value=5.3e-10 Score=95.54 Aligned_cols=62 Identities=27% Similarity=0.312 Sum_probs=54.7
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~~~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~ 49 (125)
T cd04031 2 TGRIQIQLWYDK--------------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR 49 (125)
T ss_pred cEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCC
Confidence 699999999987 67899999999999976 46799999999975
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|++|.||..
T Consensus 50 ~~~~~~kT~v~~~t~nP~wne~ 71 (125)
T cd04031 50 SEKSKRRTKTVKKTLNPEWNQT 71 (125)
T ss_pred CccccccccccCCCCCCccccE
Confidence 4569999999999999954
No 124
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.02 E-value=8.6e-11 Score=120.96 Aligned_cols=133 Identities=28% Similarity=0.498 Sum_probs=105.1
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc-------------------------c---CceeeeeeCCCC
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK-------------------------L---PWKKTTVKKKNL 310 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~-------------------------~---~~~kT~v~~~t~ 310 (477)
.+.|.-.|.|.+.+|+||..+|.+|.||||+.+.+.+.. . -.+-|+++++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 455666678889999999999999999999998873210 0 124688999999
Q ss_pred CCeeeeEEEEEeecCCCCeEEEEEEecCCC---------------------------------C---CCCeeEEEEEECc
Q 011813 311 NPEWNENFKLVVKEPESQILQLQVFDWDKV---------------------------------G---GHDRLGMQLVPLK 354 (477)
Q Consensus 311 nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~---------------------------------~---~d~~lG~~~v~L~ 354 (477)
||+|+|.|.|.+.+..+..+++.+||+|+- + .|||+|.+.+||.
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999999999998899999999998743 1 3899999999999
Q ss_pred ccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccc
Q 011813 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (477)
Q Consensus 355 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (477)
++... +.+.|+.|.++.+ .++.+|++++.+...-..+
T Consensus 269 EiP~~-Gld~WFkLepRS~-----~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 269 EIPPD-GLDQWFKLEPRSD-----KSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCcc-hHHHHhccCcccc-----cccccceEEEEEEEeeecc
Confidence 99865 3456666655432 4678999999997765433
No 125
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.01 E-value=4.6e-10 Score=97.40 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=53.1
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--- 457 (477)
|+|.+++.|.| ..|.|.|.|++|+||+. .+.+||||++++.+
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~ 48 (135)
T cd08410 1 GELLLSLNYLP--------------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK 48 (135)
T ss_pred CcEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc
Confidence 89999999998 56899999999999986 46899999999832
Q ss_pred --eEeeeeeeeeccCccceec
Q 011813 458 --DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 --~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++|+||.||..
T Consensus 49 ~~~~~kT~v~~~t~nP~wnE~ 69 (135)
T cd08410 49 LIKTKKTSCMRGTIDPFYNES 69 (135)
T ss_pred ccceEcCccccCCCCCcccee
Confidence 3469999999999999964
No 126
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.00 E-value=7.9e-10 Score=94.42 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=54.2
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--- 456 (477)
+|+|++++.|.| ..+.|.|+|++|+||+. .+.+||||++++.
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~ 49 (124)
T cd08387 2 RGELHFSLEYDK--------------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR 49 (124)
T ss_pred CCEEEEEEEECC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC
Confidence 699999999987 56899999999999986 4689999999994
Q ss_pred CeEeeeeeeeeccCccceec
Q 011813 457 GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~~~~kTkv~~~t~~P~~~~~ 476 (477)
++++||+++++|++|.||..
T Consensus 50 ~~~~kT~v~~~t~~P~wne~ 69 (124)
T cd08387 50 SNTKQSKIHKKTLNPEFDES 69 (124)
T ss_pred CCcEeCceEcCCCCCCcccE
Confidence 34569999999999999953
No 127
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.99 E-value=1.1e-09 Score=93.68 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=54.2
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--- 456 (477)
.|+|++++.|.+ ..+.|.|.|++|+||+. .+.+||||++++.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~ 49 (125)
T cd08386 2 LGRIQFSVSYDF--------------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK 49 (125)
T ss_pred ccEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC
Confidence 699999999987 56789999999999976 4689999999993
Q ss_pred CeEeeeeeeeeccCccceec
Q 011813 457 GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~~~~kTkv~~~t~~P~~~~~ 476 (477)
+++.||+++++|.+|.||..
T Consensus 50 ~~~~kT~v~~~t~~P~Wne~ 69 (125)
T cd08386 50 KHKLETKVKRKNLNPHWNET 69 (125)
T ss_pred CcceeeeeecCCCCCcccee
Confidence 45669999999999999964
No 128
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.98 E-value=1.1e-09 Score=92.81 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=42.3
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.|.|+|++|+||+. .+.+||||++++.. .++||+++++|+||.||+.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~ 66 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHET 66 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccE
Confidence 5689999999999976 46899999999964 3559999999999999964
No 129
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.97 E-value=2.8e-09 Score=111.86 Aligned_cols=99 Identities=23% Similarity=0.356 Sum_probs=81.5
Q ss_pred ceEEEEEEEEccccccc------cccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEE
Q 011813 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~------d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 334 (477)
...|.|+|+.+.+++.. +.....||||++.+-+- ...+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46899999999987421 22245799999998542 22346889989999999999999999887777899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHET 361 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~ 361 (477)
+|+|...+|+++|+..+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998753
No 130
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.96 E-value=1.2e-09 Score=93.09 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=43.1
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcC------eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG------DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~------~~~kTkv~~~t~~P~~~~~ 476 (477)
..+.|.|+|++|+||+. ++.+|||||+++.. .++||+++++|+||.||+.
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~ 70 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEV 70 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccE
Confidence 67899999999999976 56899999999842 3569999999999999954
No 131
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.95 E-value=1.2e-09 Score=95.10 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=53.2
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--- 457 (477)
|+|.++++|.+ ..+.|.|+|.+|+||+. .+.+|||||+++..
T Consensus 2 ~ei~~sL~Y~~--------------------------------~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~ 49 (138)
T cd08408 2 PELLLGLEYNA--------------------------------LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDG 49 (138)
T ss_pred CeEEEEeEEcC--------------------------------CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCC
Confidence 78999999987 67899999999999986 46899999999953
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||+.
T Consensus 50 ~~~~~~kT~v~~~t~nPvfnEt 71 (138)
T cd08408 50 QEISKSKTSIRRGQPDPEFKET 71 (138)
T ss_pred cceeeccceeecCCCCCcEeee
Confidence 2459999999999999964
No 132
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.95 E-value=1.7e-09 Score=92.35 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~ 49 (124)
T cd08385 2 LGKLQFSLDYDF--------------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK 49 (124)
T ss_pred ccEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence 699999999987 57899999999999986 46899999999854
Q ss_pred -eEeeeeeeeeccCccceec
Q 011813 458 -DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 -~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++|+||.||..
T Consensus 50 ~~~~kT~v~~~t~nP~wne~ 69 (124)
T cd08385 50 KKKFETKVHRKTLNPVFNET 69 (124)
T ss_pred CCceecccCcCCCCCceeee
Confidence 3459999999999999953
No 133
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.94 E-value=1.6e-09 Score=94.12 Aligned_cols=62 Identities=26% Similarity=0.384 Sum_probs=53.1
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
+|+|.++++|.+ ..+.|.|.|++|+||+. .+.+||||++++.+
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~ 48 (136)
T cd08404 1 RGELLLSLCYQP--------------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK 48 (136)
T ss_pred CCeEEEEEEEeC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence 599999999986 56789999999999986 46899999999853
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||..
T Consensus 49 ~~~~~~kT~v~k~t~nP~w~e~ 70 (136)
T cd08404 49 KRISKKKTHVKKCTLNPVFNES 70 (136)
T ss_pred ceeeeEcCccccCCCCCccCce
Confidence 2458999999999999853
No 134
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.94 E-value=1.6e-09 Score=94.17 Aligned_cols=62 Identities=31% Similarity=0.453 Sum_probs=53.8
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|+++++|.| ..|.|.|.|.+|+||+. .+.+||||++++++
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~ 48 (136)
T cd08402 1 LGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 48 (136)
T ss_pred CcEEEEEeEEcC--------------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC
Confidence 499999999998 67899999999999986 46899999999952
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++|+||.||..
T Consensus 49 ~~~~~~kT~v~~~t~nP~wne~ 70 (136)
T cd08402 49 KRLKKKKTTIKKRTLNPYYNES 70 (136)
T ss_pred cccceeeccceeCCCCCcccce
Confidence 3458999999999999954
No 135
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.92 E-value=2.1e-09 Score=93.34 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=53.5
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~--~ 457 (477)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 ~G~l~~sl~y~~--------------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~ 48 (136)
T cd08405 1 RGELLLSLCYNP--------------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKD 48 (136)
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCC
Confidence 599999999987 57899999999999985 4689999999983 2
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.||+++++|+||.||..
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~ 70 (136)
T cd08405 49 KRVEKKKTVIKKRTLNPVFNES 70 (136)
T ss_pred CccccccCcceeCCCCCcccce
Confidence 2458999999999999954
No 136
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.91 E-value=8.2e-09 Score=108.43 Aligned_cols=98 Identities=29% Similarity=0.513 Sum_probs=81.5
Q ss_pred EEEEEEEEcccccccc----ccCCCCcEEEEEEcCc--ccCceeee-eeCCCCCCeeeeEEEEEeecCCCCeEEEEEEec
Q 011813 265 ILHVKVVRASKLLKKD----FLGTSDPYVKLSLTGE--KLPWKKTT-VKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d----~~g~~dpyv~v~l~~~--~~~~~kT~-v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 337 (477)
.|.|+|+.+.++.... ....+||||.+.+-+- ....++|+ +..++.||.|+|+|+|.+..++-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999776532 2246899999998542 22346888 667899999999999999988878899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCce
Q 011813 338 DKVGGHDRLGMQLVPLKLLTPHETK 362 (477)
Q Consensus 338 d~~~~d~~lG~~~v~L~~l~~~~~~ 362 (477)
|..++|||+|+..+|+..|..+-.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999987543
No 137
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.90 E-value=3e-09 Score=90.62 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=52.7
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEcC--
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~-- 457 (477)
|+|++++.|.+ ..+.|.|+|.+|+||+. .+.+||||++++.+
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~ 48 (123)
T cd08521 1 GEIEFSLSYNY--------------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDK 48 (123)
T ss_pred CeEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCC
Confidence 89999999986 57899999999999975 35899999999842
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|.+|.||..
T Consensus 49 ~~~~~~kT~v~~~t~~P~wne~ 70 (123)
T cd08521 49 SKQSKRKTSVKKNTTNPVFNET 70 (123)
T ss_pred CcCceeeccccCCCCCCcccce
Confidence 4569999999999999964
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.90 E-value=1.9e-08 Score=105.54 Aligned_cols=99 Identities=24% Similarity=0.369 Sum_probs=80.8
Q ss_pred ceEEEEEEEEccccc----cc--cccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEE
Q 011813 263 VGILHVKVVRASKLL----KK--DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~----~~--d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 334 (477)
...|.|+|+.+.+++ .. +.....||||++.+.+- ...+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 12245799999999642 23356899999999999999999998877777899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCc
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHET 361 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~ 361 (477)
+|+|..+.|+++|++.+|+..|..+-.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999998753
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=98.89 E-value=2e-08 Score=105.00 Aligned_cols=123 Identities=22% Similarity=0.324 Sum_probs=92.3
Q ss_pred eEEEEEEEEcccccc---c---cccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCee-eeEEEEEeecCCCCeEEEEE
Q 011813 264 GILHVKVVRASKLLK---K---DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQV 334 (477)
Q Consensus 264 G~L~V~v~~A~~L~~---~---d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~W-nE~f~f~v~~~~~~~L~v~V 334 (477)
..|+|+|++|++|+. . +.....||||++.+.+- ...+++|++++++.||.| ||+|.|.+..++-.-|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 12234799999998643 223468999988899999 99999999877767899999
Q ss_pred EecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 335 ~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
+|+|..+.|+++|++.+|+..|..+-.. .+|... ..+.-....|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~---VpL~~~-----~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVRA---VRLHDR-----AGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCeeE---EEccCC-----CCCCCCCeEEEEEEEEcC
Confidence 9999888999999999999999877432 233221 011223457888888776
No 140
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.89 E-value=2.8e-09 Score=92.27 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=53.9
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|.++++|.+ ..+.|+|.|.+|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~ 49 (133)
T cd04009 2 YGVLTVKAYYRA--------------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRH 49 (133)
T ss_pred ceEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCC
Confidence 699999999986 56789999999999986 46899999999963
Q ss_pred -----eEeeeeeeeeccCccceec
Q 011813 458 -----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 -----~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||..
T Consensus 50 ~~~~~~~~kT~v~~~t~nP~wnE~ 73 (133)
T cd04009 50 LFPDVPTPKTQVKKKTLFPLFDES 73 (133)
T ss_pred cCccccccccccCcCCCCCccCCE
Confidence 4569999999999999953
No 141
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.89 E-value=4.8e-09 Score=84.48 Aligned_cols=86 Identities=19% Similarity=0.338 Sum_probs=70.6
Q ss_pred EEEEEEEcccccccc---ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCC
Q 011813 266 LHVKVVRASKLLKKD---FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (477)
Q Consensus 266 L~V~v~~A~~L~~~d---~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~ 342 (477)
|.|+|.+|+|+...+ ..+.+||||.+++++.. +.||+. +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 679999999998877 56889999999999764 346665 589999999999995 46789999999853 45
Q ss_pred CCeeEEEEEECcccCCC
Q 011813 343 HDRLGMQLVPLKLLTPH 359 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~~ 359 (477)
.-.+|..-+.++++...
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 56799999999888643
No 142
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.89 E-value=3.1e-09 Score=92.12 Aligned_cols=61 Identities=28% Similarity=0.464 Sum_probs=52.9
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG--- 457 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~--- 457 (477)
|+|.+++.|.| ..+.|+|+|++|++|+. .+.+||||++++.+
T Consensus 1 g~l~~~~~y~~--------------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~ 48 (134)
T cd08403 1 GELMFSLCYLP--------------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR 48 (134)
T ss_pred CeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc
Confidence 89999999997 67899999999999986 46899999999842
Q ss_pred --eEeeeeeeeeccCccceec
Q 011813 458 --DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 --~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|++|.||..
T Consensus 49 ~~~~~kT~v~~~t~nP~wne~ 69 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYNEA 69 (134)
T ss_pred ccceecCCcccCCCCCcccce
Confidence 2458999999999999864
No 143
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.87 E-value=6.7e-10 Score=114.54 Aligned_cols=99 Identities=29% Similarity=0.452 Sum_probs=85.8
Q ss_pred ccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCcc----cCceeeeeeCCCCCCeeeeEEEEEeecC----CCCeE
Q 011813 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~----~~~~kT~v~~~t~nP~WnE~f~f~v~~~----~~~~L 330 (477)
.......|.|.|+.|+++.+-|.+|.|||||.+.+++.. ...++|+|+.+|+||+|+|+|+|.|+.. +...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 344556778888999999999999999999999998753 2467999999999999999999999732 25679
Q ss_pred EEEEEecCCCCCCCeeEEEEEECcccC
Q 011813 331 QLQVFDWDKVGGHDRLGMQLVPLKLLT 357 (477)
Q Consensus 331 ~v~V~d~d~~~~d~~lG~~~v~L~~l~ 357 (477)
.++|+|+|-.+.+||-|++.+.|+++.
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCC
Confidence 999999999999999999999998876
No 144
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.85 E-value=2.7e-09 Score=91.01 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=43.2
Q ss_pred EEEEEEeeeec---CCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 430 LLSVLVQGAED---VEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 430 ~L~V~V~~A~~---L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
+|.|+|++|+| |+. .|++||||++.+++++.||+++++++||.||+++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f 54 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQY 54 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEE
Confidence 48999999999 654 5789999999999999999999999999999764
No 145
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.84 E-value=7.2e-09 Score=88.25 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=52.6
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEc---
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYK--- 456 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~--- 456 (477)
|+|++++.|.+ ..+.|.|.|.+|+||+. .+.+||||++++.
T Consensus 1 G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~ 48 (123)
T cd08390 1 GRLWFSVQYDL--------------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE 48 (123)
T ss_pred CEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC
Confidence 89999999987 57899999999999985 3579999999984
Q ss_pred CeEeeeeeeeeccCccceec
Q 011813 457 GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.+||++++++++|.||..
T Consensus 49 ~~~~~T~v~~~~~~P~wne~ 68 (123)
T cd08390 49 RRSLQSKVKRKTQNPNFDET 68 (123)
T ss_pred CCceEeeeEcCCCCCccceE
Confidence 34559999999999999964
No 146
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.84 E-value=5.9e-09 Score=90.18 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=43.3
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
..+.|.|+|++|+||+. .+.+||||++++.+ .+.||+++++|++|.||..
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~ 68 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEE 68 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccE
Confidence 67899999999999986 46899999999963 3459999999999999954
No 147
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.83 E-value=9.9e-09 Score=87.49 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=53.4
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|++++.|.+ ..+.|+|.|.+|+||+. .+.+||||++++.+
T Consensus 1 ~G~~~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~ 48 (123)
T cd04035 1 LGTLEFTLLYDP--------------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGA 48 (123)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCC
Confidence 489999999987 56889999999999986 36899999999842
Q ss_pred ---eEeeeeeeeeccCccceec
Q 011813 458 ---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ---~~~kTkv~~~t~~P~~~~~ 476 (477)
.+.||+++++|++|.||..
T Consensus 49 ~~~~~~rT~v~~~~~~P~Wne~ 70 (123)
T cd04035 49 SKATKLRTKTVHKTRNPEFNET 70 (123)
T ss_pred CCCCceeeeeecCCCCCCccce
Confidence 3569999999999999964
No 148
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=98.82 E-value=5.6e-09 Score=88.45 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=43.6
Q ss_pred eEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEeeeeeeee-ccCccceecC
Q 011813 429 GLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKVSFL-SLLYTYSLQL 477 (477)
Q Consensus 429 g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~~kTkv~~~-t~~P~~~~~~ 477 (477)
|.|.|+|.+|++|+. .+.+||||++.+++++.||+++++ ++||.||+.|
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F 53 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTI 53 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEE
Confidence 789999999999875 378999999999999999999876 7999999653
No 149
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.82 E-value=6.7e-09 Score=88.70 Aligned_cols=61 Identities=21% Similarity=0.197 Sum_probs=52.1
Q ss_pred ceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 011813 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (477)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-- 457 (477)
.|+|+++++|.+ ..+.|.|+|.+|+||+. ++.+||||++.+..
T Consensus 2 ~G~l~~sl~Y~~--------------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~ 49 (124)
T cd08389 2 CGDLDVAFEYDP--------------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK 49 (124)
T ss_pred CEEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence 699999999987 67899999999999986 46899999988743
Q ss_pred -eEeeeeeeeeccCccceec
Q 011813 458 -DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 -~~~kTkv~~~t~~P~~~~~ 476 (477)
+++||+++++ +||.||+.
T Consensus 50 ~~~~kTkv~~~-~nP~fnE~ 68 (124)
T cd08389 50 KQRAKTKVQRG-PNPVFNET 68 (124)
T ss_pred cceeecccccC-CCCcccCE
Confidence 4559999887 99999964
No 150
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.81 E-value=8.6e-09 Score=89.09 Aligned_cols=61 Identities=26% Similarity=0.414 Sum_probs=53.2
Q ss_pred eEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 011813 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (477)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-- 458 (477)
|+|++.++|.+ ..+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~ 48 (134)
T cd00276 1 GELLLSLSYLP--------------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK 48 (134)
T ss_pred CeEEEEEEeeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe
Confidence 89999999987 56899999999999986 468999999999653
Q ss_pred ---EeeeeeeeeccCccceec
Q 011813 459 ---KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 459 ---~~kTkv~~~t~~P~~~~~ 476 (477)
++||++++++.+|.||..
T Consensus 49 ~~~~~~T~~~~~~~~P~wne~ 69 (134)
T cd00276 49 KLKKKKTSVKKGTLNPVFNEA 69 (134)
T ss_pred EeeeecCcceecCCCCeeeee
Confidence 459999999999999964
No 151
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.81 E-value=4.7e-09 Score=86.90 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=42.9
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
.|.|+|++|+||+. .+.+||||+++++++++||+++++|.+|.||..
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~ 50 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEG 50 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccce
Confidence 38999999999986 468999999999999999999999999999964
No 152
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.81 E-value=7.7e-09 Score=86.50 Aligned_cols=49 Identities=20% Similarity=0.058 Sum_probs=45.1
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
....|+|.|++|+||+ ++.+||||+++++++++||+++++|++|.||..
T Consensus 2 ~~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~ 50 (111)
T cd04011 2 QDFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEY 50 (111)
T ss_pred CcEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccE
Confidence 4578999999999999 678999999999999999999999999999965
No 153
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.80 E-value=6.9e-09 Score=86.29 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=43.1
Q ss_pred eEEEEEEeeeecCCCC-------CCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~-------~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|.|+|.+|+||+.. +.+||||++++++++.||+++++|+||.||..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~ 55 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNER 55 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccce
Confidence 7899999999999852 24899999999998889999999999999964
No 154
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=98.77 E-value=7e-09 Score=88.85 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=41.9
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
++|+|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~ 49 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEE 49 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCce
Confidence 5799999999985 468999999999999999999999999999964
No 155
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.73 E-value=1.1e-08 Score=87.32 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=45.6
Q ss_pred cceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|.|+|++|+||+. .+.+||||++++++++.||+++++|.||.||+.
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~ 77 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNAT 77 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCE
Confidence 67999999999999985 457999999999999889999999999999954
No 156
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.73 E-value=1.3e-08 Score=87.32 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=42.9
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+|+|+|++|+||+. .+.+||||+++++++++||+++++|+||.||..
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~ 50 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEK 50 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceE
Confidence 48999999999975 468999999999999999999999999999964
No 157
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.72 E-value=1.3e-08 Score=85.95 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=39.5
Q ss_pred EEEEEEeeeecCCCC--CCCCcEEEEEEcC-------eEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG-------DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~~--~~~DPyvkv~l~~-------~~~kTkv~~~t~~P~~~~~ 476 (477)
+|+|+|.+|+||+.. |.+||||+|++.+ +++||+++.+|+||.||+.
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~ 56 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNET 56 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcE
Confidence 489999999999873 7899999999832 2348999999999999954
No 158
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.71 E-value=1.8e-08 Score=87.50 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=46.0
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
..|.|+|+|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~ 65 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSS 65 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCce
Confidence 67999999999999975 468999999999999999999999999999964
No 159
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.71 E-value=2.5e-08 Score=103.29 Aligned_cols=123 Identities=26% Similarity=0.363 Sum_probs=95.3
Q ss_pred EEccccccccccCCCCcEEEEEEcCc-ccCceeeeeeCCCCCCeeeeEEEEEeecC---------------CCCeEEEEE
Q 011813 271 VRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQILQLQV 334 (477)
Q Consensus 271 ~~A~~L~~~d~~g~~dpyv~v~l~~~-~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---------------~~~~L~v~V 334 (477)
++++++-+.+ ++.+|||+.+...+. +...++|++++.|.+|.|||.|.|.+... ..-.+++++
T Consensus 138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 4444555544 466999999998654 32346899999999999999999998744 244688999
Q ss_pred Ee-cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 335 FD-WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 335 ~d-~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
|+ .+....++|+|++.+++..+........|+.|.+..+......+..-|.+++.++|.-
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 99 5566679999999999999886667778888877755555556778899999999874
No 160
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.71 E-value=3.6e-08 Score=99.61 Aligned_cols=121 Identities=26% Similarity=0.381 Sum_probs=97.7
Q ss_pred eEEEEEEEEcccccccccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeee-eEEEEEeecC--CCCeEEEEEEecCC
Q 011813 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN-ENFKLVVKEP--ESQILQLQVFDWDK 339 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~Wn-E~f~f~v~~~--~~~~L~v~V~d~d~ 339 (477)
|.|.|+|..|++|+.+|.. ...|.||.+++.+... +|.+..+++||.|| +.|.|.+.+. ....|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~---ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF---KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce---ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7899999999999998864 4579999999997664 89999999999999 7889998754 36789999999999
Q ss_pred CCCCCeeEEEEEECcccCCC----------CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 340 VGGHDRLGMQLVPLKLLTPH----------ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~----------~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
.+.+|-||.+.++++.+... ....-|++....+ ...+|+|.+-+..--
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivkvdl 137 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVKVDL 137 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEEEee
Confidence 99999999999999876422 1235777765432 346888887666443
No 161
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.70 E-value=2.5e-08 Score=84.32 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=43.8
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
+.|.|.|.+||+|+..+..||||++.+++++.||++.+++ ||.||.+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F 49 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDF 49 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCC-CCceeeEE
Confidence 6899999999999988889999999999998899999885 99999654
No 162
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.69 E-value=6.1e-08 Score=101.43 Aligned_cols=126 Identities=25% Similarity=0.393 Sum_probs=95.7
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCccc---CceeeeeeCCCCCCeee-eEEEEEeecCCCCeEEEEEEecCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN-ENFKLVVKEPESQILQLQVFDWDK 339 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~Wn-E~f~f~v~~~~~~~L~v~V~d~d~ 339 (477)
-.|.|.|+.|++|+... .|...|||.+.+-+... ..++|.+..+.+||+|| |.|+|.+.++.-.-|++.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46889999999999544 35667999999865432 23566778899999999 999999999988899999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccC
Q 011813 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (477)
Q Consensus 340 ~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~ 398 (477)
++...|||++.+|+..+..+-. ..+|.... .+.-....|.+.+...|..+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y-----SEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY-----SEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccCc-----hhhhhhhhheeeeEeccccCc
Confidence 9988999999999999986631 12221110 012234567888888886655
No 163
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=98.68 E-value=2.2e-08 Score=84.32 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=42.8
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+++|+|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~ 50 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQ 50 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEE
Confidence 47899999999986 468999999999999999999999999999964
No 164
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.68 E-value=1.6e-08 Score=86.03 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=43.3
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 430 LLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 430 ~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
.|+|+|++|+||+.. .+||||+++++++++||+++++|+||.||.+|
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F 47 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVF 47 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEE
Confidence 389999999999988 89999999999998899999999999999653
No 165
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=98.66 E-value=4e-08 Score=86.06 Aligned_cols=48 Identities=23% Similarity=0.321 Sum_probs=44.2
Q ss_pred eEEEEEEeeeecCCC--CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|.|++|+||+. .+.+||||++++++++.||+++++|+||.||..
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~ 51 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEE 51 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeeccc
Confidence 789999999999975 357999999999999999999999999999964
No 166
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=98.65 E-value=3.5e-08 Score=82.49 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=41.4
Q ss_pred eEEEEEEeeeecCCC---C-CCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---E-NHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~-~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|+|++|+||+. . +.+||||++++.+ ...||+++++|+||.||..
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~ 55 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEET 55 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCcccee
Confidence 689999999999985 3 6899999999853 3459999999999999954
No 167
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=98.64 E-value=4.2e-08 Score=84.02 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=41.6
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeE-eeeeeeeeccCccceec
Q 011813 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~ 476 (477)
...|+|+|.+|+||+.++.+||||++++++.+ .||+++ +++||.||..
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~ 51 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEE 51 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecC-CCCCCccCCE
Confidence 45799999999999998899999999998855 489874 6899999964
No 168
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=98.64 E-value=2.6e-08 Score=84.17 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=42.2
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeee-ccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFL-SLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~-t~~P~~~~~ 476 (477)
|.|+|+|.+|+||+. .+.+||||+++++++++||+++++ ++||.||..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~ 52 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEE 52 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCce
Confidence 689999999999986 468999999999999899999864 799999954
No 169
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.62 E-value=4.8e-08 Score=83.66 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=45.4
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
.++|+|+|++|++|.+ .+.+||||++++++++.||+++++|.+|.||.++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f 54 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQA 54 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceE
Confidence 4689999999999986 4689999999999999999999999999999653
No 170
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=98.61 E-value=4.2e-08 Score=81.86 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=40.5
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeEeeeeeeeeccCccc-ee
Q 011813 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDKKRTKVSFLSLLYTY-SL 475 (477)
Q Consensus 431 L~V~V~~A~~L~~----~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~-~~ 475 (477)
|.|+|++|+||+. .+.+||||++++++++.||+++++|+||.| |+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne 50 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSE 50 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCc
Confidence 6899999999975 357999999999998889999999999999 64
No 171
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.61 E-value=8.9e-08 Score=82.53 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=42.0
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
+.|+|.|++|+||+. .+.+||||++.+.+ .++||+++++|.+|.||..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~ 68 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNET 68 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccce
Confidence 789999999999985 46799999999964 5669999999999999954
No 172
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.61 E-value=6.2e-08 Score=84.01 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=43.2
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
.|+|+|++|+||+. .+.+||||+++++++++||+++++|+||.||..
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~ 51 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQT 51 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcE
Confidence 68999999999986 468999999999999999999999999999853
No 173
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=98.59 E-value=6.6e-08 Score=82.86 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=43.7
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~-----~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|.|++|+||+. .+.+||||++++++++.||+++++|.+|.||.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~ 53 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYW 53 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCc
Confidence 689999999999974 467999999999999999999999999999964
No 174
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=98.59 E-value=6e-08 Score=82.62 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=42.4
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+|+|+|.+|+||+. .+.+||||++++++.+.||+++++|+||.||..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~ 50 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEV 50 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcE
Confidence 48999999999986 357999999999999999999999999999954
No 175
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.58 E-value=5.5e-08 Score=81.12 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=38.5
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcC-----eEeeeeeeeeccCccceecC
Q 011813 431 LSVLVQGAEDVEGENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 431 L~V~V~~A~~L~~~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
|.|+|++|+||++ .+||||++.++. .+.|||++++|+||.||+.+
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F 50 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEF 50 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEE
Confidence 6899999999975 699999999863 24599999999999999653
No 176
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=98.58 E-value=6.9e-08 Score=81.63 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=43.5
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|+|++|+||+. .+.+||||++++++.+.||+++++|.||.||..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~ 51 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKI 51 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcE
Confidence 689999999999986 467999999999998899999999999999853
No 177
>PLN02352 phospholipase D epsilon
Probab=98.57 E-value=4.9e-07 Score=96.99 Aligned_cols=123 Identities=15% Similarity=0.235 Sum_probs=92.2
Q ss_pred CCceEEEEEEEEccccccc----ccc-CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE
Q 011813 261 KPVGILHVKVVRASKLLKK----DFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~ 335 (477)
.-.|.|.++|.+|+-+... +.. ...||||.+.+++.+. .|| .+..||.|||+|.+.+.......+.|.|.
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 3469999999999843221 111 1239999999997654 466 55669999999999997655457999998
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCc-eEEEEecccccCCCCCCCCccc-eEEEEEEEEEecccCc
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDMKQR-GKIVVELTYVPFKEDS 399 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~y~p~~~~~ 399 (477)
| ...+||.+.+|..++..++. .+.|+++...- +.... ..|++++.|.|...++
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN------GKPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC------CCCCCCCEEEEEEEEEEhhhCc
Confidence 8 25799999999999988865 88899886531 12223 5999999999987763
No 178
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=98.55 E-value=7.9e-08 Score=81.45 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=43.2
Q ss_pred eEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~---------~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|.|++|+||+.. +.+||||+++++++..||+++++|.+|.||..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~ 57 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccce
Confidence 6799999999999852 47999999999998889999999999999954
No 179
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=98.54 E-value=1.1e-07 Score=80.80 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeE-eeeeeeeeccCccceecC
Q 011813 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 431 L~V~V~~A~~L~~----~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~~ 477 (477)
|.|.|.+|+||+. ++.+||||++++++++ .||+++++|+||.||.++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F 53 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDF 53 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeE
Confidence 6799999999986 2579999999998764 599999999999999653
No 180
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=98.50 E-value=1.5e-07 Score=80.63 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=43.1
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+.|+|.|++|++|+. .+.+||||++++++++.||+++++|++|.||..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~ 51 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEK 51 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceE
Confidence 368999999999986 467999999999998889999999999999954
No 181
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=98.49 E-value=1.8e-07 Score=83.37 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=43.0
Q ss_pred ceEEEEEEeeeecCCC---------------------------------CCCCCcEEEEEEcCeEe-eeeeeeeccCccc
Q 011813 428 AGLLSVLVQGAEDVEG---------------------------------ENHNNPYAIILYKGDKK-RTKVSFLSLLYTY 473 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---------------------------------~~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~ 473 (477)
-|.|.|+|++|++|+. .+.+||||++.+++.+. ||+++++|.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 4899999999999974 24589999999998765 9999999999999
Q ss_pred eecC
Q 011813 474 SLQL 477 (477)
Q Consensus 474 ~~~~ 477 (477)
|..+
T Consensus 86 nE~F 89 (158)
T cd04015 86 NESF 89 (158)
T ss_pred ceEE
Confidence 9653
No 182
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=98.49 E-value=1.8e-07 Score=79.45 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=41.1
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe-EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD-KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-~~kTkv~~~t~~P~~~~~ 476 (477)
.|+|+|++|+||+. .+.+||||+++++++ ..||+++++|.||.||..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~ 51 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEK 51 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCcccee
Confidence 38999999999986 468999999999884 559999999999999954
No 183
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.49 E-value=2e-07 Score=79.39 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=42.7
Q ss_pred eEEEEEEeeeecCCC----CCCCCcEEEEEEcC--eEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG----ENHNNPYAIILYKG--DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~--~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|+|++|+||+. .+.+||||++.+++ ++.||+++++|++|.||..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~ 55 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNET 55 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEE
Confidence 789999999999985 24689999999988 6779999999999999965
No 184
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.48 E-value=2.3e-07 Score=80.13 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=43.5
Q ss_pred cceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeEe-eeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~-------------~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~ 476 (477)
.+|.|+|+|++|+||... +.+||||++++++++. ||+++++|.+|.||..
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~ 65 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEE 65 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCccee
Confidence 368999999999999752 3689999999998764 9999999999999965
No 185
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=98.48 E-value=2.2e-07 Score=78.94 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=40.8
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeE-eeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|++|+||+. .+.+||||+++++++. .||+++++|+||.||..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEE 51 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccce
Confidence 7899999999975 4689999999998865 49999999999999954
No 186
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=98.47 E-value=2e-07 Score=79.76 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=40.3
Q ss_pred EEEEEeeeecCCC-CCCCCcEEEEEEcC--eEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG-ENHNNPYAIILYKG--DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~-~~~~DPyvkv~l~~--~~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|++|+||+. .+.+||||++++++ ++.||+++++|+||.||..
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~ 49 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEH 49 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCce
Confidence 5799999999986 46899999999974 5679999999999999964
No 187
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=98.45 E-value=1.7e-07 Score=79.36 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=40.1
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|+|++|+||+. .+.+||||++++++ +++||+++++|+||.||..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~ 53 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNET 53 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceE
Confidence 7899999999986 36899999999964 5569999999999999954
No 188
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.45 E-value=1.4e-07 Score=102.41 Aligned_cols=108 Identities=26% Similarity=0.197 Sum_probs=89.1
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEE-ee--cCCCCeEEEEEEe
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQVFD 336 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d 336 (477)
..|+|.|-|..|++|+--.-+..+||||+.++.++ +..++||++.++|.||+|||...+. .+ ......|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36899999999999966555677999999999765 3446799999999999999988766 22 2235789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~ 369 (477)
.+....+.++|.+.++|.++...++..-|+.+.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999889999999999999998777766777663
No 189
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=98.45 E-value=2.2e-07 Score=79.22 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=40.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEc-CeEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYK-GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~-~~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|+|++|+||+. .+.+||||+++++ .+..||+++++|+||.||..
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEH 51 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccce
Confidence 7899999999986 3679999999997 56669999999999999954
No 190
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.44 E-value=2.7e-07 Score=77.65 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=40.7
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCeE-eeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~ 476 (477)
|.|+|++|+||+..+.+||||++++++++ .||+++++ ++|.||.+
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~ 47 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEE 47 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccce
Confidence 78999999999988899999999999865 59999999 99999965
No 191
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.44 E-value=9.9e-08 Score=102.30 Aligned_cols=92 Identities=28% Similarity=0.388 Sum_probs=81.9
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d 343 (477)
-..+|++++|-+|.+.|.+|.+|||+++.+|.... ..+...+.+|+||+|++.|++...-+....+.++|||+|..+.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 45679999999999999999999999999997653 24678889999999999999988777778899999999999999
Q ss_pred CeeEEEEEECccc
Q 011813 344 DRLGMQLVPLKLL 356 (477)
Q Consensus 344 ~~lG~~~v~L~~l 356 (477)
+.+|+..++|+.-
T Consensus 692 ~~iget~iDLEnR 704 (1105)
T KOG1326|consen 692 EKIGETTIDLENR 704 (1105)
T ss_pred chhhceehhhhhc
Confidence 9999999998763
No 192
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.44 E-value=3.1e-07 Score=77.90 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=42.2
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-EeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|+|++|+||+. .+.+||||+++++++ +.||+++++|.+|.||..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~ 52 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEV 52 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCce
Confidence 689999999999986 468999999999875 459999999999999954
No 193
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.35 E-value=6e-07 Score=77.50 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe-------EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD-------KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-------~~kTkv~~~t~~P~~~~~ 476 (477)
.|+|+|++|+||+. .+.+||||++++++. +.||+++++|.||.||..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~ 57 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEE 57 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeE
Confidence 38999999999986 367999999999765 459999999999999964
No 194
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.35 E-value=6.1e-07 Score=76.48 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=42.5
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeeee-ccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSFL-SLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~~-t~~P~~~~~ 476 (477)
|.|.|+|++|+||+. .+.+||||++++++++++|++.++ +.+|.||..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~ 52 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEK 52 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccce
Confidence 689999999999986 358999999999999899999884 899999953
No 195
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.34 E-value=6.4e-07 Score=76.45 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=40.5
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeEe--eeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK--RTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~--kTkv~~~t~~P~~~~~ 476 (477)
.|+|.|++|+||+. .+.+||||++++++++. ||+++++|+||.||..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~ 52 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKM 52 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceE
Confidence 37899999999986 46899999999998764 7888999999999853
No 196
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=98.33 E-value=6.9e-07 Score=76.36 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=40.6
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe---EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD---KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~---~~kTkv~~~t~~P~~~~~ 476 (477)
.|+|+|.+|+||+. .+.+||||++++++. ..||+++++|++|.||..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~ 54 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEE 54 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccce
Confidence 68999999999986 468999999998753 459999999999999854
No 197
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=98.33 E-value=7e-07 Score=78.79 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=43.0
Q ss_pred CcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----------------------------EeeeeeeeeccCccc
Q 011813 426 SGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----------------------------KKRTKVSFLSLLYTY 473 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~-----------------------------~~kTkv~~~t~~P~~ 473 (477)
+..+.|+|+|++|+||.. .+.+||||++++++. ..||+++++|++|.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 378999999999999975 578999999999642 258999999999999
Q ss_pred ee
Q 011813 474 SL 475 (477)
Q Consensus 474 ~~ 475 (477)
|.
T Consensus 105 nE 106 (153)
T cd08676 105 NE 106 (153)
T ss_pred cc
Confidence 94
No 198
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=2.9e-06 Score=87.17 Aligned_cols=111 Identities=24% Similarity=0.341 Sum_probs=92.6
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcC----cccCceeeeeeCCCCCCeeeeEEEEEeec---CCCCeEEEEEE
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~----~~~~~~kT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v~V~ 335 (477)
...++|+|+.|.+|+... .|.--|||.+.+.+ +++++..|+.+.++..|.+||+|+|.+.+ ++...|.+.|-
T Consensus 1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 356788889999998754 67889999999843 34556778999999999999999999874 34668999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCC
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNI 374 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~ 374 (477)
|+.-.+.|..+|.+.++|.++........|++|.+++..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihm 1241 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHM 1241 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccccccc
Confidence 998777788999999999999988888999999876654
No 199
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.27 E-value=1.3e-06 Score=75.76 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=40.2
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcC-------------eEeeeeeeeeccCccc-eecC
Q 011813 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKG-------------DKKRTKVSFLSLLYTY-SLQL 477 (477)
Q Consensus 430 ~L~V~V~~A~~L~~--~~~~DPyvkv~l~~-------------~~~kTkv~~~t~~P~~-~~~~ 477 (477)
..+|++.+|+||+. .+.+||||++++.+ +++||+++++|+||.| |+++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f 65 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQF 65 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEE
Confidence 46789999999985 36899999999952 3579999999999999 7653
No 200
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.4e-06 Score=83.35 Aligned_cols=96 Identities=34% Similarity=0.403 Sum_probs=80.2
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEee--cCCCCeEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQ 333 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~ 333 (477)
.+.....-|.|++++|..|..+|.+|.+||||..++.+. ..-+++|.+.++|.||.||+.|.+.+. +.....+.|.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 455667889999999999999999999999999999754 233578999999999999999999886 3346789999
Q ss_pred EEecCCCCCCCeeEEEEEEC
Q 011813 334 VFDWDKVGGHDRLGMQLVPL 353 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L 353 (477)
|||++..+..+++|-+...+
T Consensus 307 vgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ecccCCCcCccCCCcccccc
Confidence 99999776788988876543
No 201
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.23 E-value=8.4e-07 Score=87.49 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=42.0
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEc-----CeEeeeeeeeeccCcccee
Q 011813 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYK-----GDKKRTKVSFLSLLYTYSL 475 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~-----~~~~kTkv~~~t~~P~~~~ 475 (477)
...|+|+|.+|+||-. +|.+||||++.+- ..|+|||+++.|+||+||.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNE 234 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNE 234 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccc
Confidence 4589999999999964 8999999999983 3556999999999999995
No 202
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.21 E-value=1.3e-06 Score=75.84 Aligned_cols=46 Identities=28% Similarity=0.279 Sum_probs=41.0
Q ss_pred EEEEEeeeecCCC--CCCCCcEEEEEEc----CeEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG--ENHNNPYAIILYK----GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~--~~~~DPyvkv~l~----~~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|.|++|+||+. .+.+||||+++++ +.++||+++++|.+|.||..
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~ 52 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEA 52 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceE
Confidence 5799999999985 4789999999998 67779999999999999864
No 203
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.19 E-value=9.9e-07 Score=103.57 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=46.5
Q ss_pred cceEEEEEEeeeecCCCC-CCCCcEEEEEEcCe-EeeeeeeeeccCccceecC
Q 011813 427 GAGLLSVLVQGAEDVEGE-NHNNPYAIILYKGD-KKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~-~~~DPyvkv~l~~~-~~kTkv~~~t~~P~~~~~~ 477 (477)
-.|.|+|+|++|+||.++ +++||||++++|++ ++|||++++|.||.||.+|
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f 2030 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGF 2030 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccce
Confidence 579999999999999975 89999999999965 7799999999999999764
No 204
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.18 E-value=2e-06 Score=67.40 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=41.8
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eEeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~---~~~kTkv~~~t~~P~~~~~ 476 (477)
|+|+|++|+||+. .+.+||||++++++ ...||++++.+.+|.|+.+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~ 52 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEE 52 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeee
Confidence 7899999999987 46899999999988 6789999999999999965
No 205
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=98.16 E-value=1.6e-06 Score=73.97 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=40.2
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEeeeeeee-eccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKVSF-LSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~-~~~kTkv~~-~t~~P~~~~~ 476 (477)
|+|+|++|+||+. .+.+||||++++++ ++++|++.+ ++.+|.||..
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~ 52 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNET 52 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCE
Confidence 7899999999986 46899999999988 788999976 5899999864
No 206
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.15 E-value=2e-06 Score=73.69 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=38.3
Q ss_pred EeeeecCCC-CCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 435 VQGAEDVEG-ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 435 V~~A~~L~~-~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
|.+|+||+. .+.+||||++++++.++||++++++.||.||..
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~ 44 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNET 44 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccce
Confidence 689999988 678999999999999999999999999999853
No 207
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.13 E-value=2.6e-06 Score=71.47 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=39.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeE-eeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~ 476 (477)
|+|.|++|+||+. .+.+||||++++++++ .||+++.++.+|.||..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~ 50 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNES 50 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCccccc
Confidence 5799999999986 3579999999997644 59999999999999953
No 208
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=98.09 E-value=5e-06 Score=71.02 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=40.3
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcCe-EeeeeeeeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKGD-KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~--~~~~DPyvkv~l~~~-~~kTkv~~~t~~P~~~~~ 476 (477)
.|.|+|.+|+.+.. .+.+||||+++++++ ..||+++++|.+|.||..
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~ 52 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEH 52 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccE
Confidence 68999999995544 357999999999988 779999999999999954
No 209
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.04 E-value=3.4e-06 Score=73.71 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=34.4
Q ss_pred eeeecCCCCCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 436 QGAEDVEGENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 436 ~~A~~L~~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
..++|.- +++||||.+.+|+++.||+++++|+||.||..|
T Consensus 18 L~~rD~~--~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~l 57 (168)
T KOG1030|consen 18 LAIRDFL--GSSDPYVVLELGNQKLKTRVVYKNLNPEWNEEL 57 (168)
T ss_pred eeeeccc--cCCCCeEEEEECCeeeeeeeecCCCCCcccceE
Confidence 4455664 479999999999999999999999999999654
No 210
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.03 E-value=8.8e-06 Score=71.03 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=43.3
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeEe-eeeeeeeccCccceecC
Q 011813 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~~ 477 (477)
....|.|.|.+|++|+.. .||||.+.+++.+. ||+++.++.||.|++.|
T Consensus 9 ~~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F 58 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHF 58 (146)
T ss_pred EEEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeE
Confidence 467899999999999985 48999999999987 99999999999998543
No 211
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=98.01 E-value=6.9e-06 Score=72.44 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=34.4
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEE--c---CeEeeeeeeeeccCccceec
Q 011813 429 GLLSVLVQGAEDVEG---ENHNNPYAIILY--K---GDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~---~~~~DPyvkv~l--~---~~~~kTkv~~~t~~P~~~~~ 476 (477)
+.|+|....+-+|+. ++.+||||++++ . .++.||+++++|+||.||+.
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~ 59 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNES 59 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccce
Confidence 344444433333655 468999999997 2 35669999999999999965
No 212
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.91 E-value=6.6e-05 Score=77.31 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=95.3
Q ss_pred eeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCC----CCCCeeEEEEEECcccCCCCceEEEEecccccCCCC
Q 011813 301 KKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD 376 (477)
Q Consensus 301 ~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~----~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~ 376 (477)
.+|.++.+.+||.|-+.|.+...-...|.++++++|.+.. ..++++|++...+..+.........+-+..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 4889999999999999988887766789999999998743 457899999999998875533222222211
Q ss_pred CCCCccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEE
Q 011813 377 PKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAII 453 (477)
Q Consensus 377 ~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv 453 (477)
......|.|.+..+-.- +......-.++|++|+. .+++|||..+
T Consensus 117 -~~~~~~g~iti~aee~~--------------------------------~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~ 163 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDE--------------------------------SDNDVVQFSFRAKNLDPKDFFSKSDPYLEF 163 (529)
T ss_pred -CccCCcccEEEEeeccc--------------------------------ccCceeeeeeeeeecCcccccccCCcceEE
Confidence 12345677776654321 12223334456899986 3689999999
Q ss_pred EEc--C-eEe---eeeeeeeccCccce
Q 011813 454 LYK--G-DKK---RTKVSFLSLLYTYS 474 (477)
Q Consensus 454 ~l~--~-~~~---kTkv~~~t~~P~~~ 474 (477)
+-. . ... ||.+.++|++|.|.
T Consensus 164 ~~~~~d~s~~~~~~tEv~~n~l~p~w~ 190 (529)
T KOG1327|consen 164 YKRVDDGSTQMLYRTEVVKNTLNPQWA 190 (529)
T ss_pred EEecCCCceeeccccceeccCCCCccc
Confidence 753 2 222 99999999999997
No 213
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=97.89 E-value=1.5e-05 Score=67.51 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=36.2
Q ss_pred EEeeeecCCC---CCCCCcEEEEEEcCeE-------eeeeeeeeccCccceec
Q 011813 434 LVQGAEDVEG---ENHNNPYAIILYKGDK-------KRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 434 ~V~~A~~L~~---~~~~DPyvkv~l~~~~-------~kTkv~~~t~~P~~~~~ 476 (477)
..++|++|+. .+.+||||++++.+.. .||+++++|+||.||..
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~ 57 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTT 57 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEE
Confidence 4479999976 4679999999997753 69999999999999953
No 214
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.89 E-value=9.8e-06 Score=62.73 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=66.7
Q ss_pred EEEEEEccccccccccCC-CCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEee--cCCCCeEEEEEEecCCCCCC
Q 011813 267 HVKVVRASKLLKKDFLGT-SDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK--EPESQILQLQVFDWDKVGGH 343 (477)
Q Consensus 267 ~V~v~~A~~L~~~d~~g~-~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~~~d 343 (477)
-+++++|+||.-....|. +.-|++--+.-.+--..||+++++..||+|+|+|.|.+. +...-.|.+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 378899999876543332 344665444322222468999999999999999999875 3446678899998 45678
Q ss_pred CeeEEEEEECcccCCC
Q 011813 344 DRLGMQLVPLKLLTPH 359 (477)
Q Consensus 344 ~~lG~~~v~L~~l~~~ 359 (477)
+.||.|.+.|+++..+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 8999999999998754
No 215
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=97.89 E-value=1.9e-05 Score=67.47 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=39.2
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEc------CeEeeeeeeeecc-Cccceec
Q 011813 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYK------GDKKRTKVSFLSL-LYTYSLQ 476 (477)
Q Consensus 429 g~L~V~V~~A~~L~~-----~~~~DPyvkv~l~------~~~~kTkv~~~t~-~P~~~~~ 476 (477)
-.|+|+|++|+||+. .+.+||||++++. ..+.||++++++. +|.||..
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~ 61 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNET 61 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCc
Confidence 368999999999975 3579999999994 4556999988776 9999853
No 216
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=97.85 E-value=2.6e-05 Score=64.86 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=35.1
Q ss_pred EEEeeeecCCC---CCCCCcEEEEEEcCe------EeeeeeeeeccCccce
Q 011813 433 VLVQGAEDVEG---ENHNNPYAIILYKGD------KKRTKVSFLSLLYTYS 474 (477)
Q Consensus 433 V~V~~A~~L~~---~~~~DPyvkv~l~~~------~~kTkv~~~t~~P~~~ 474 (477)
+..++|++|+. .+.+||||++++.+. ..||+++++|++|.||
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn 54 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK 54 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE
Confidence 44569999986 468999999998654 3599999999999998
No 217
>PLN02964 phosphatidylserine decarboxylase
Probab=97.82 E-value=2.3e-05 Score=83.66 Aligned_cols=93 Identities=18% Similarity=0.308 Sum_probs=76.1
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEE-EEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKL-SLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v-~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
..+.-.|+..+++++|+ ++ ..|+|..+ .+|.+. .||.+.++|.||+|||...|.+...+....++.|||
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred ecccccCeEEEEeehhh----hc---cCCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEe
Confidence 35566899999999997 33 35887655 555443 599999999999999999999987666667999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
.+.+++++++|.|+++|.++...+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHH
Confidence 999999999999999998876543
No 218
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.76 E-value=1.9e-05 Score=69.57 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEEcCeEeeeeeeeeccCccceecC
Q 011813 444 ENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 444 ~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~~ 477 (477)
.+.+||||+|.+++++.||+++++|+||+||++|
T Consensus 32 ~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f 65 (151)
T cd04018 32 KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQI 65 (151)
T ss_pred CCCcCcEEEEEECCEeeecceEcCCCCCCcceEE
Confidence 4579999999999999999999999999999764
No 219
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.72 E-value=0.00013 Score=75.72 Aligned_cols=223 Identities=19% Similarity=0.295 Sum_probs=145.5
Q ss_pred CCCCceeCCCC-------cchHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHhhcc-CCceeeeEEEeEeeCCCC
Q 011813 61 EIPLWVKNPDY-------ERVDWLNRFLSDMWPY------LDKAICANVRTTAQPIFDEYS-GKFKIESIEFENLTLGTL 126 (477)
Q Consensus 61 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp~------~~~~~~~~i~~~~~~~l~~~~-p~~~i~~i~~~~~~lG~~ 126 (477)
+.|.|...... -.|-.+|.++..+..- ...++-+.....++.++.... ... ++.+++.++-+|.+
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~L-L~~~~i~elElg~~ 159 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRL-LQEIRIRELELGTK 159 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccceehhhhccc
Confidence 58888766332 3455566777766652 222233333333444444332 343 89999999999999
Q ss_pred CCeEeeEEEEecC------------C-------------CeEEEEeeeeeecCCcEEEEEEEe---eeEEEEEEEEEEEE
Q 011813 127 PPTIYGIRVYETN------------E-------------NQLVMEPALRWAGNPNIVLVLKLL---SFRITVQLVDLQIF 178 (477)
Q Consensus 127 ~P~i~~ir~~~~~------------~-------------~~~~le~~~~~~~~~~i~l~~~~~---~~~~~v~v~~l~~~ 178 (477)
.|.+++.+++.-+ + ..+.+=.++.|.|+..-++.+... +-+++|+ -.+++
T Consensus 160 f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iK--l~~l~ 237 (1051)
T KOG3532|consen 160 FMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVK--ITKLT 237 (1051)
T ss_pred cccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEE--EEEec
Confidence 9999999998711 0 123445688999988777777652 2344444 44999
Q ss_pred EEEEEEEeecCCCCCceeEEEEEcCCCceEEEEEE--EeCcccccccchhHHHHHHHHHhhhccccCCceee-------e
Q 011813 179 AAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIK--ILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYE-------I 249 (477)
Q Consensus 179 g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~--~~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~-------i 249 (477)
|.+|+.+. ..|+ .+++++|.+.|.+..+++ ..|-.+-+ -|...|++.|+..+.+...|||+-. .
T Consensus 238 Gm~r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~ 310 (1051)
T KOG3532|consen 238 GMVRVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPN 310 (1051)
T ss_pred cceeEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccC
Confidence 99999986 3444 889999999998755544 33322221 2456788888888888899998532 1
Q ss_pred ecCCccc----ccccCCceEEEEEEEEccccccccccCCCCcEEEEEEcC
Q 011813 250 PILDASS----VAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG 295 (477)
Q Consensus 250 ~i~~~~~----~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~ 295 (477)
|+-.... ..--.+.|.+.|++.++..|.. ..++..-||.+.+.+
T Consensus 311 ~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 311 PIFQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred cccccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 1111111 0123467999999999998865 457888999988854
No 220
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.67 E-value=7.2e-05 Score=77.03 Aligned_cols=88 Identities=31% Similarity=0.522 Sum_probs=70.8
Q ss_pred EEEccccccccccCCCCcEEEEEEc--Cc-ccCceeeeeeCCCCCCeeeeEEEEEeecCC----CCeEEEEEEecCCCCC
Q 011813 270 VVRASKLLKKDFLGTSDPYVKLSLT--GE-KLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKVGG 342 (477)
Q Consensus 270 v~~A~~L~~~d~~g~~dpyv~v~l~--~~-~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~----~~~L~v~V~d~d~~~~ 342 (477)
..+|++|.++|..+++|||..++-. .+ ....++|.+.++++||.|.+ |.+...... ...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999988753 22 23457999999999999995 455544322 4678999999999999
Q ss_pred CCeeEEEEEECcccCC
Q 011813 343 HDRLGMQLVPLKLLTP 358 (477)
Q Consensus 343 d~~lG~~~v~L~~l~~ 358 (477)
++++|.+..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999988864
No 221
>PLN03008 Phospholipase D delta
Probab=97.63 E-value=5.2e-05 Score=82.06 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=28.8
Q ss_pred CCCCcEEEEEEcCeEe-eeeeeeeccCccceecC
Q 011813 445 NHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 445 ~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~~ 477 (477)
+++||||+|.++++++ ||+++++++||.||+.|
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F 108 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKF 108 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeE
Confidence 3679999999988765 99999999999999654
No 222
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.61 E-value=7.2e-05 Score=64.17 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=35.5
Q ss_pred EEEEEeeeecCCC-----CC--CCCcEEEEEEcC---eEeeeeeeeeccC--ccce
Q 011813 431 LSVLVQGAEDVEG-----EN--HNNPYAIILYKG---DKKRTKVSFLSLL--YTYS 474 (477)
Q Consensus 431 L~V~V~~A~~L~~-----~~--~~DPyvkv~l~~---~~~kTkv~~~t~~--P~~~ 474 (477)
|+|+|.+|+|++. .| .+|||||+.+.+ ++++|.|+++|+| |+||
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FN 57 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFN 57 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEe
Confidence 8999999999653 23 599999999975 4569999999988 4444
No 223
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.59 E-value=0.00013 Score=60.97 Aligned_cols=100 Identities=26% Similarity=0.324 Sum_probs=71.0
Q ss_pred EEEEEEEccccccccc-------------cCCCCcEEEEEEc--CcccCceeeeeeCCCCCCeeeeEEEEEee-------
Q 011813 266 LHVKVVRASKLLKKDF-------------LGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVK------- 323 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~-------------~g~~dpyv~v~l~--~~~~~~~kT~v~~~t~nP~WnE~f~f~v~------- 323 (477)
|.|.|++|.+|+..-. .--.++||++.+. ++. ..++|+++.++..|.||.+++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4688999999975321 0124899999853 333 3468999999999999999999875
Q ss_pred -c-------CCCCeEEEEEEecCCC----------CCCCeeEEEEEECcccCCCC-ceEEEE
Q 011813 324 -E-------PESQILQLQVFDWDKV----------GGHDRLGMQLVPLKLLTPHE-TKEFTL 366 (477)
Q Consensus 324 -~-------~~~~~L~v~V~d~d~~----------~~d~~lG~~~v~L~~l~~~~-~~~~~~ 366 (477)
+ .+...+.++||+.+.- .+|-.||.+.+|+.+|.... +..-|+
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~ 141 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWY 141 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccc
Confidence 1 1245799999997632 23557999999999986432 333444
No 224
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.59 E-value=2.7e-05 Score=84.09 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=115.2
Q ss_pred CceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecC---------CCCeEEE
Q 011813 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQL 332 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~---------~~~~L~v 332 (477)
..--++++|.+|+.|...|..+.+|||+.+.+.++. ++|.++.+|+||.|+++..|.-.+. .-..+.+
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs---~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~ 280 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQS---KETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF 280 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhccccc---ceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence 344578888999999999999999999999988765 4899999999999999988853211 1246889
Q ss_pred EEEecCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecccC-ccccccccccccc
Q 011813 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED-SIKFSSVSKKYSR 411 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~-~~~~~~~~~~~~~ 411 (477)
++||.++.+.++++|+......-... .+.-.|.+... ++...|++.++....-.... ..+....
T Consensus 281 e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r--------g~~l~gd~l~a~eliq~~~~i~~p~~~~------ 345 (1105)
T KOG1326|consen 281 EVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR--------GAFLDGDVLIAAELIQIGKPIPQPPPQR------ 345 (1105)
T ss_pred EeehhhhhchHHhhcccccceEEEec-CCccceEEeec--------ccccccchhHHHHHHhhcCCCCCCCccc------
Confidence 99999999999999997664332222 33445555543 24455655544322211100 0000000
Q ss_pred CCCCCCCCCCcc--ccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeEeeeeeee
Q 011813 412 KGSGNDQSSDEE--ALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTKVSF 466 (477)
Q Consensus 412 ~~~~~~~~~~~~--~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~~~~~kTkv~~ 466 (477)
.....-. |.. .....+.++|-...-+|... .....|-+-+.++++...+-.+.
T Consensus 346 ~~~~~~v--p~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~ 403 (1105)
T KOG1326|consen 346 EIIFSLV--PKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIF 403 (1105)
T ss_pred ccceecc--ccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeeh
Confidence 0000000 111 11144555555555566654 23578888899999988766655
No 225
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.58 E-value=6.5e-05 Score=62.65 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEEcCeE-eeeeeeeeccCccceecC
Q 011813 444 ENHNNPYAIILYKGDK-KRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 444 ~~~~DPyvkv~l~~~~-~kTkv~~~t~~P~~~~~~ 477 (477)
+|.+||||+++++++. .||+++++|.||.||..+
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f 44 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNAST 44 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCce
Confidence 4679999999998864 599999999999999643
No 226
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.45 E-value=0.00011 Score=80.75 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=53.1
Q ss_pred CccceEEEEEEEEEecccCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 011813 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (477)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~V~~A~~L~~---~~~~DPyvkv~l~ 456 (477)
++..|+|.|+++|. .|.|+|-|+.||+|+- +..+|||||.|+.
T Consensus 1509 ~~iggqV~LsIsY~----------------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLl 1554 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN----------------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLL 1554 (1639)
T ss_pred cccCceEEEEEEEc----------------------------------CceEEEEhhhhcccccccCCCCCCcceeEEec
Confidence 45677999999994 5899999999999953 4579999999996
Q ss_pred C-----eEeeeeeeeeccCccceec
Q 011813 457 G-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 457 ~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
. .|+|||++++|.+|+||+-
T Consensus 1555 Pdp~k~sKRKTKvvrkt~~PTfnE~ 1579 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRKTRNPTFNEM 1579 (1639)
T ss_pred CCchHhhhhhhccccccCCCchhhh
Confidence 4 4459999999999999964
No 227
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00011 Score=71.88 Aligned_cols=110 Identities=25% Similarity=0.335 Sum_probs=86.3
Q ss_pred CCceEEEEEEEEcccccccccc-CCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE-e
Q 011813 261 KPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-D 336 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~-d 336 (477)
..+|.|.|.|++|++|..+... ..++|||+|++.+.. ..+.+|+...+|.+|.+.....|.- .+....|.+.|| |
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecc
Confidence 4579999999999999876532 368999999997643 3456888889999998877666654 344678999999 4
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC-ceEEEEecccc
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLDLLKH 371 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~~~-~~~~~~~l~~~ 371 (477)
+.++.++.|+|.+.+-+.++.... ....|+++...
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 666777889999999999998776 66788887653
No 228
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=97.38 E-value=0.00013 Score=64.38 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEEcCeEeeeeeeee-ccCccceecC
Q 011813 444 ENHNNPYAIILYKGDKKRTKVSFL-SLLYTYSLQL 477 (477)
Q Consensus 444 ~~~~DPyvkv~l~~~~~kTkv~~~-t~~P~~~~~~ 477 (477)
.+.+||||++++++++.||+++.+ |+||.||..|
T Consensus 18 ~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F 52 (150)
T cd04019 18 NRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEEL 52 (150)
T ss_pred CCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcE
Confidence 368999999999999889999976 6999999653
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.30 E-value=0.00033 Score=56.77 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=35.8
Q ss_pred EEEEEeeeecCCC------CCCCCcEEEEEEcCeEe-eeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEG------ENHNNPYAIILYKGDKK-RTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~------~~~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~ 476 (477)
|+|+|+.|||++. .+.+||||.+++++..+ ||++. +|+.|++.|+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s-rnd~WnE~F~ 52 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS-RNDRWNEDFE 52 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC-CCCcccceEE
Confidence 6899999999975 46799999999999854 99995 5555555554
No 230
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=97.25 E-value=0.00039 Score=55.28 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=39.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eEeeeeeeeeccCcccee
Q 011813 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTKVSFLSLLYTYSL 475 (477)
Q Consensus 431 L~V~V~~A~~L~~---~~~~DPyvkv~l~~-~~~kTkv~~~t~~P~~~~ 475 (477)
|.|.|++|++|+. .+.+||||.+++.+ ...+|++..++.+|.|+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~ 49 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNE 49 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccc
Confidence 5789999999976 45799999999998 777999999999999984
No 231
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=97.23 E-value=0.00057 Score=54.64 Aligned_cols=46 Identities=28% Similarity=0.418 Sum_probs=40.0
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe---EeeeeeeeeccCccceec
Q 011813 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 431 L~V~V~~A~~L~~~---~~~DPyvkv~l~~~---~~kTkv~~~t~~P~~~~~ 476 (477)
|.|.|++|++|... +..||||++++.+. ..+|+++.++.+|.||.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~ 53 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNET 53 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccce
Confidence 67999999999874 46999999999875 679999999999999854
No 232
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.95 E-value=0.058 Score=53.73 Aligned_cols=200 Identities=17% Similarity=0.180 Sum_probs=125.4
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeec-------CCCCeEEEEEEecC
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-------PESQILQLQVFDWD 338 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~-------~~~~~L~v~V~d~d 338 (477)
+.|+|++|+|.+... ...-.+..+++++.. .|..+..+..|.||......+.. .....+++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 578999999998752 345677888888766 67778899999999888887752 23678999999998
Q ss_pred -CCCCCCeeEEEEEECccc---CCC--CceEEEEecccccCCCCCCCCccceEEEEEEEEEecccCcccccc--cccc-c
Q 011813 339 -KVGGHDRLGMQLVPLKLL---TPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSS--VSKK-Y 409 (477)
Q Consensus 339 -~~~~d~~lG~~~v~L~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~--~~~~-~ 409 (477)
..+..+.+|.+.++|... ..+ .....|++|...... -.+.+-+|.+.+....-......... .... .
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~----y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSK----YKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccc----cccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 556788999999999998 444 456688888653111 12345578888776653332110000 0000 0
Q ss_pred ccCC------CCCCC-------C--------CCccccCcceEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeE
Q 011813 410 SRKG------SGNDQ-------S--------SDEEALSGAGLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDK 459 (477)
Q Consensus 410 ~~~~------~~~~~-------~--------~~~~~~~~~g~L~V~V~~A~~L~~~---------~~~DPyvkv~l~~~~ 459 (477)
.+.+ +.... . .|.+.......|.|++-.|+||..- +...-|....+-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 00000 0 0111122467899999999998531 234556666666666
Q ss_pred eeeeeeeeccCcccee
Q 011813 460 KRTKVSFLSLLYTYSL 475 (477)
Q Consensus 460 ~kTkv~~~t~~P~~~~ 475 (477)
..|.--+...+|++.+
T Consensus 232 Vt~~~F~~l~~~~f~~ 247 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPP 247 (340)
T ss_pred eEeeeccccCCCCcCe
Confidence 6666666666666543
No 233
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.86 E-value=0.0009 Score=66.14 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=93.3
Q ss_pred CCceEEEEEEEEccccccccccCCCCcEEEEEEc--CcccCceeeeeeCCCCCCeeeeEEEEEeecC-----------CC
Q 011813 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVKEP-----------ES 327 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~--~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~-----------~~ 327 (477)
.....|++.|+++.+++........|-|+++.+. ++...+.+|.++++|.+|.|+|.|.+.+..- ..
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3456677788888877654323345778887763 2223345899999999999999999988641 13
Q ss_pred CeEEEEEEecCCC-CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 328 QILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 328 ~~L~v~V~d~d~~-~~d~~lG~~~v~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
..+.|++|+...+ ..|.++|.+.+.|..|...-..+..+++... .....|.|.+.++.--
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIRQ 504 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEec
Confidence 4689999998764 5688999999999999887777778887542 2456788888888753
No 234
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.53 E-value=0.064 Score=47.55 Aligned_cols=90 Identities=24% Similarity=0.237 Sum_probs=61.0
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEec
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDW 337 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~ 337 (477)
..++|+|+++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|.+. +. ....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 4688888865 433321 12344333 367999999999765 32 367899999997
Q ss_pred CCCC----CCCeeEEEEEECcccC
Q 011813 338 DKVG----GHDRLGMQLVPLKLLT 357 (477)
Q Consensus 338 d~~~----~d~~lG~~~v~L~~l~ 357 (477)
.... ....+|.+.++|-+..
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 6421 1246999999987643
No 235
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.45 E-value=0.16 Score=44.05 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=79.8
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeee-CCCCCCeeeeEEEEEee---c-----CCCCeEEEE
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVK---E-----PESQILQLQ 333 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~-~~t~nP~WnE~f~f~v~---~-----~~~~~L~v~ 333 (477)
.=.+.++|++..+++. ....-||+...+.......+|... ..+-.-.|||.|.+.+. + .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3457788899988876 223445555555433212233322 34445689999999864 1 124578899
Q ss_pred EEecCCCCCCCeeEEEEEECcccCCC--CceEEEEecccccCCCCCCCCccceEEEEEEEEEeccc
Q 011813 334 VFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (477)
Q Consensus 334 V~d~d~~~~d~~lG~~~v~L~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (477)
|+....-++...+|.+.++|++.... ......+.+... ......|++++.+.+..+
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 99885333336899999999999874 455666666432 355678999999887543
No 236
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.21 E-value=0.077 Score=46.57 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=88.3
Q ss_pred CCceEEEEEEEEccccccccc--cCCCCcEEE--EEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC----------
Q 011813 261 KPVGILHVKVVRASKLLKKDF--LGTSDPYVK--LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---------- 326 (477)
Q Consensus 261 ~~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~--v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~---------- 326 (477)
...-.|+++|..++-....-. .+..+.-.. +.++++++ +|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF---~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRF---RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceE---ecCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 345678889888875432111 134444444 44566655 8899999999999999999987431
Q ss_pred ---CCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCce--EEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 011813 327 ---SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK--EFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (477)
Q Consensus 327 ---~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (477)
.+.+++.|-..|..+...++|.-.++-..+...... ....++..... ......|-|.++++.+|.
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~----e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGP----ESKVPVGILDLRLELLPN 152 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCC----CCccceeEEEEEEEeecC
Confidence 457888888888776678999999888877655443 56666643211 124578999999999983
No 237
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.016 Score=57.00 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=42.7
Q ss_pred CcceEEEEEEeeeecCCC----CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceecC
Q 011813 426 SGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQL 477 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L~~----~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~~ 477 (477)
.+.|.+.|.|++|++|.. +..++|||||++.. .++||+...+|+.|-|-+||
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l 326 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQL 326 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhh
Confidence 378999999999999964 23799999999864 44499999999999887664
No 238
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.44 E-value=0.026 Score=60.99 Aligned_cols=90 Identities=22% Similarity=0.340 Sum_probs=67.3
Q ss_pred ceEEEEEEEEccccccccccCCCCcEEEEEEcCc----ccCceeeeeeC-CCCCCeeee-EEEEE-eecCCCCeEEEEEE
Q 011813 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE----KLPWKKTTVKK-KNLNPEWNE-NFKLV-VKEPESQILQLQVF 335 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~----~~~~~kT~v~~-~t~nP~WnE-~f~f~-v~~~~~~~L~v~V~ 335 (477)
.+.+.|+|+++.=|..++ ...||.|.+-+- ....++|++.. ++.||+|+| .|.|. |.-++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 467899999999987655 458999988432 12345676664 788999995 57775 32334467999999
Q ss_pred ecCCCCCCCeeEEEEEECcccCCCC
Q 011813 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (477)
Q Consensus 336 d~d~~~~d~~lG~~~v~L~~l~~~~ 360 (477)
+... .++|+-.+|+..+..+-
T Consensus 778 eEgg----K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEGG----KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccCC----ceeeeeccchhcccCcc
Confidence 9852 59999999999998774
No 239
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.43 E-value=0.086 Score=46.68 Aligned_cols=93 Identities=24% Similarity=0.264 Sum_probs=60.9
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCccc-CceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEec
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKL-PWKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDW 337 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~-~~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~ 337 (477)
..++|++....++...+ ....+-||.+.+ +++.. ....|.....+.++.|||...|.+. +. ....|.+.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35678888887776421 234567777755 43322 2223433333468999999999864 32 367899999998
Q ss_pred CCCC--CCCeeEEEEEECcccC
Q 011813 338 DKVG--GHDRLGMQLVPLKLLT 357 (477)
Q Consensus 338 d~~~--~d~~lG~~~v~L~~l~ 357 (477)
+..+ .+..||.+.++|-+..
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4678999999987643
No 240
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.39 E-value=0.037 Score=53.16 Aligned_cols=119 Identities=19% Similarity=0.241 Sum_probs=77.6
Q ss_pred ccCCceEEEEEEEEcccccccc--ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEe
Q 011813 259 IKKPVGILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (477)
Q Consensus 259 ~~~~~G~L~V~v~~A~~L~~~d--~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 336 (477)
.....|+|.+++..+++|+... .+-.-+-||++..+.+. ..+|.+.....--.|.|+|+..+.+ ...+.+-||.
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 3456799999999999997543 23456899999987543 3567776666666799999998875 3578999999
Q ss_pred cCCCCCCCeeEEEEEECcccCC-CCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 337 WDKVGGHDRLGMQLVPLKLLTP-HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 337 ~d~~~~d~~lG~~~v~L~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
|+...++++--.-.+.+..+.. +..+..-+. -+++|++.+.+.+.
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred cCchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 9877666652222222222221 122222222 34678887777665
No 241
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.37 E-value=0.1 Score=47.07 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=60.4
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEec
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDW 337 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~ 337 (477)
..++|+|+.+.++...+ ...+-||.+.+ |++... ...|+....+.++.|||.+.|.+. +. ....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 35889999999998622 34667777644 444331 234555444567999999999764 32 367899999997
Q ss_pred CCCC----------------CCCeeEEEEEECccc
Q 011813 338 DKVG----------------GHDRLGMQLVPLKLL 356 (477)
Q Consensus 338 d~~~----------------~d~~lG~~~v~L~~l 356 (477)
.... .+..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5322 135778887777553
No 242
>PLN02223 phosphoinositide phospholipase C
Probab=94.67 E-value=0.057 Score=56.58 Aligned_cols=50 Identities=16% Similarity=0.049 Sum_probs=39.0
Q ss_pred cceEEEEEEeeeecCCC--------CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--------ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--------~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
....|+|.|+.|++++. ...+||||+|.+.| .++||++..+..||.||.+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~ 469 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEE 469 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecce
Confidence 45789999999998741 13589999999865 3457877778899999954
No 243
>PLN02952 phosphoinositide phospholipase C
Probab=94.65 E-value=0.052 Score=57.96 Aligned_cols=50 Identities=18% Similarity=0.091 Sum_probs=39.7
Q ss_pred cceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--~-------~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
....|+|.|+.|++|+. . ..+||||+|.+-| .++||+++.+|.||.||.+
T Consensus 468 ~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~ 531 (599)
T PLN02952 468 VKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEE 531 (599)
T ss_pred ccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCe
Confidence 35689999999998752 1 2359999999854 5569999999999999954
No 244
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.34 E-value=0.18 Score=45.42 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=62.7
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE--cCcccCc-eeeeeeC----CCCCCeeeeEEEEEee--c-CCCCeEEEE
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKK----KNLNPEWNENFKLVVK--E-PESQILQLQ 333 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~-~kT~v~~----~t~nP~WnE~f~f~v~--~-~~~~~L~v~ 333 (477)
..+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 467899999999987664456788888865 4333211 2333211 1235779999999875 2 236689999
Q ss_pred EEecCCCC---------CCCeeEEEEEECccc
Q 011813 334 VFDWDKVG---------GHDRLGMQLVPLKLL 356 (477)
Q Consensus 334 V~d~d~~~---------~d~~lG~~~v~L~~l 356 (477)
+|+....+ .+..||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99986543 346899999888664
No 245
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.02 E-value=0.18 Score=44.85 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEecCCCCCCCeeEEEEEECccc
Q 011813 283 GTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (477)
Q Consensus 283 g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l 356 (477)
..+|-||.+.+ ++.... ..+|+.+.-+..+.|||...|++. +. .+..|.|+|||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45778888766 332221 124555555667889999999875 32 3678999999998655677899999988664
No 246
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.92 E-value=0.58 Score=36.96 Aligned_cols=86 Identities=27% Similarity=0.381 Sum_probs=59.4
Q ss_pred CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCce
Q 011813 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362 (477)
Q Consensus 283 g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~ 362 (477)
|.++-.+.+.+++... .+|.-.. -.+..|++.|.+.+.. +..|+|.||-+|. ..+-|...+-|++...
T Consensus 7 ~~~eV~avLklDn~~V--gqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~---- 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVV--GQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred cccceEEEEEEcCeEE--eeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----
Confidence 3467888888886543 3565533 3477899999999974 5789999998874 3466777777777322
Q ss_pred EEEEecccccCCCCCCCCccceEEEEEEEE
Q 011813 363 EFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (477)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (477)
...++ -.+.|.+..+++|
T Consensus 75 ~~~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 75 EVQLD------------MEPQLCLVAELTF 92 (98)
T ss_pred cceec------------cccccEEEEEEEe
Confidence 22222 3467888888887
No 247
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.74 E-value=0.41 Score=43.24 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=45.5
Q ss_pred EEEEEEEEccccccccccCCCCcEEEEEE--cCcccCceeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEEecC
Q 011813 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVFDWD 338 (477)
Q Consensus 265 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~d~d 338 (477)
.++|+|.++..+. .+......-||++.+ +++.....+|+...-+.++.|||...|.+. +. ....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4677888876432 222222345666543 433332335666666778999999888865 32 3678999999974
No 248
>PLN02222 phosphoinositide phospholipase C 2
Probab=93.50 E-value=0.13 Score=54.76 Aligned_cols=50 Identities=16% Similarity=-0.010 Sum_probs=38.9
Q ss_pred cceEEEEEEeeeecCC----C-----CCCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVE----G-----ENHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~----~-----~~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
....|.|.|+.|++++ . ....||||+|.+-| .++||+++.+|.||.||..
T Consensus 450 ~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~ 513 (581)
T PLN02222 450 VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEV 513 (581)
T ss_pred ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCe
Confidence 3568999999998753 1 13579999999853 4569999999999999943
No 249
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.23 E-value=0.46 Score=41.31 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=46.1
Q ss_pred EEEEEE--cCcccC--ceeeeeeCCC-CCCeeeeEEEEEee--c-CCCCeEEEEEEecCCCCCC----CeeEEEEEECcc
Q 011813 288 YVKLSL--TGEKLP--WKKTTVKKKN-LNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGH----DRLGMQLVPLKL 355 (477)
Q Consensus 288 yv~v~l--~~~~~~--~~kT~v~~~t-~nP~WnE~f~f~v~--~-~~~~~L~v~V~d~d~~~~d----~~lG~~~v~L~~ 355 (477)
||.+.+ |++... .+.|+....+ .++.|||...|.+. + +....|.|.||+.+....+ ..||.+.++|-+
T Consensus 5 ~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 5 YVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp EEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred EEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence 444433 544433 2356655555 79999999999875 3 3367899999998765554 689999999877
Q ss_pred c
Q 011813 356 L 356 (477)
Q Consensus 356 l 356 (477)
.
T Consensus 85 ~ 85 (142)
T PF00792_consen 85 Y 85 (142)
T ss_dssp T
T ss_pred C
Confidence 5
No 250
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.19 E-value=1.5 Score=39.30 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=53.4
Q ss_pred CCCCcEEEEEEcCcccCceeeeeeC--CCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCC
Q 011813 283 GTSDPYVKLSLTGEKLPWKKTTVKK--KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (477)
Q Consensus 283 g~~dpyv~v~l~~~~~~~~kT~v~~--~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~ 358 (477)
.+..-|+++.++++.. .+|+... ....=.|||.|.+.+... -+.|.++||.... ..+..|+++.+|+-....
T Consensus 35 ~~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred hheeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 3456899999987655 3554433 333346789999999874 4689999999986 678899999999865543
No 251
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.04 E-value=1.1 Score=40.91 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=42.7
Q ss_pred CceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCCCC--CCeeEEEEEECcc
Q 011813 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG--HDRLGMQLVPLKL 355 (477)
Q Consensus 299 ~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~~~--d~~lG~~~v~L~~ 355 (477)
...+|.+...+.+|.|||++.+.++.. ....|.|+.++...-.+ ...+|.+-+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 346888999999999999999998743 35678898887643221 2578999998843
No 252
>PLN02230 phosphoinositide phospholipase C 4
Probab=92.87 E-value=0.14 Score=54.82 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=39.3
Q ss_pred cceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eEeeeeeeeeccCccceec
Q 011813 427 GAGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~--~-------~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~~~~ 476 (477)
....|.|.|+.+++++. . ..+||||+|.+-| .++||++..++.||.||.+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wnee 530 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKE 530 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCe
Confidence 35679999999998742 1 2479999999854 3458999889999999965
No 253
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.11 E-value=2.4 Score=38.73 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=42.4
Q ss_pred CceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCC-CCC---CeeEEEEEECc
Q 011813 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-GGH---DRLGMQLVPLK 354 (477)
Q Consensus 299 ~~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~-~~d---~~lG~~~v~L~ 354 (477)
...+|.+...+.+|.|+|++.+.++.. ....|.|++++.... .+| ..+|.+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888999999999999988732 366799999886522 122 57899999985
No 254
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=90.22 E-value=3.4 Score=37.57 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=34.5
Q ss_pred ceeeeeeCCCCCCeeeeEEEEEeecCC--CCeEEEEEEecCCCCC-C--CeeEEEEEECcc
Q 011813 300 WKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGG-H--DRLGMQLVPLKL 355 (477)
Q Consensus 300 ~~kT~v~~~t~nP~WnE~f~f~v~~~~--~~~L~v~V~d~d~~~~-d--~~lG~~~v~L~~ 355 (477)
...|.+..++.+|.|+|+|.+.++... ...|.|++++...-.+ + ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888888999999999999987433 5679999999764322 2 689999999988
No 255
>PLN02228 Phosphoinositide phospholipase C
Probab=89.89 E-value=0.45 Score=50.69 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=36.7
Q ss_pred ceEEEEEEeeeecCCC---C------CCCCcEEEEEEcC-----eEeeeeeeeeccCccc-e
Q 011813 428 AGLLSVLVQGAEDVEG---E------NHNNPYAIILYKG-----DKKRTKVSFLSLLYTY-S 474 (477)
Q Consensus 428 ~g~L~V~V~~A~~L~~---~------~~~DPyvkv~l~~-----~~~kTkv~~~t~~P~~-~ 474 (477)
...|+|.|++|++|+. . ...||||+|.+-+ .+.||++++++.||.| +
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~ 491 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGN 491 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECC
Confidence 4589999999998731 1 2389999999854 3349999988899999 5
No 256
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.90 E-value=2.3 Score=34.48 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=46.0
Q ss_pred EEEEEEEccccccccccCCCCcEEEEEE--cCcccC-ceeeeeeCCCCCCeeeeEEEEEee--c-CCCCeEEEEEEecC
Q 011813 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (477)
Q Consensus 266 L~V~v~~A~~L~~~d~~g~~dpyv~v~l--~~~~~~-~~kT~v~~~t~nP~WnE~f~f~v~--~-~~~~~L~v~V~d~d 338 (477)
+.+.+..+.+..-......++-||.+.+ +++... ...|+.+.-...+.|||...|.+. + +....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4566666666654433233578888865 433321 224555444556899999998764 3 23678999999865
No 257
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=84.90 E-value=10 Score=34.16 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=39.9
Q ss_pred eeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCC-----CCCCeeEEEEEECcc
Q 011813 301 KKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-----GGHDRLGMQLVPLKL 355 (477)
Q Consensus 301 ~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~-----~~d~~lG~~~v~L~~ 355 (477)
.+|.+..+ .+|.|+|++.+.++.. ....|.|++|+.+.- .....+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999998743 366899999997632 235679999998876
No 258
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=84.36 E-value=21 Score=32.44 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=62.1
Q ss_pred ccccCCceeeeecCCcccccccCCceE-EEEEEEEccccccccccCCCCcEEEEEEcCcc--cCceeeeeeCCCCCCeee
Q 011813 239 GIYIWPQTYEIPILDASSVAIKKPVGI-LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWN 315 (477)
Q Consensus 239 ~~~v~P~~~~i~i~~~~~~~~~~~~G~-L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP~Wn 315 (477)
..+|.|..+.+.-.. .+..++++ ++|.+.+..+-. ..|.-.++.+... .....|.|..++.+|.|+
T Consensus 4 ~LYVYP~~l~~~~~k----~~~kaRNI~V~V~lrd~D~~~-------~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f~ 72 (185)
T cd08697 4 HLYVYPLHLKYDSQK----TFAKARNIAVCIEFRDSDEED-------AKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEFY 72 (185)
T ss_pred eEEEcccEEEecccc----cccccccEEEEEEEEeCCCCc-------CccceEEecCCCCCcceEEEEEEEEcCCCCccc
Confidence 457888877654211 12223333 556665554311 1222222222221 234578888889999999
Q ss_pred eEEEEEeecC--CCCeEEEEEEecCCC--C-------CCCeeEEEEEECcc
Q 011813 316 ENFKLVVKEP--ESQILQLQVFDWDKV--G-------GHDRLGMQLVPLKL 355 (477)
Q Consensus 316 E~f~f~v~~~--~~~~L~v~V~d~d~~--~-------~d~~lG~~~v~L~~ 355 (477)
|++.+.++-. ....|.|+.|+.+.. . ....+|-+.+||-.
T Consensus 73 dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 73 DEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 9999988733 356799999987521 1 12457888888755
No 259
>PLN02270 phospholipase D alpha
Probab=82.16 E-value=1.3 Score=48.85 Aligned_cols=33 Identities=15% Similarity=0.027 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEEcCeEe-eeeeeeecc-Cccceec
Q 011813 444 ENHNNPYAIILYKGDKK-RTKVSFLSL-LYTYSLQ 476 (477)
Q Consensus 444 ~~~~DPyvkv~l~~~~~-kTkv~~~t~-~P~~~~~ 476 (477)
++.+||||.|.+++.+. ||+++.+.+ ||.|++.
T Consensus 44 ~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~ 78 (808)
T PLN02270 44 KGESQLYATIDLEKARVGRTRKIENEPKNPRWYES 78 (808)
T ss_pred CCCCCceEEEEeCCcEEEEEeecCCCCCCCccccc
Confidence 35899999999999888 999998754 8988854
No 260
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=81.86 E-value=2.4 Score=46.18 Aligned_cols=48 Identities=25% Similarity=0.178 Sum_probs=36.0
Q ss_pred cceEEEEEEeeeecCCCC--CCCCcEEEEEEcC-----eEeeee-eeeeccCccce
Q 011813 427 GAGLLSVLVQGAEDVEGE--NHNNPYAIILYKG-----DKKRTK-VSFLSLLYTYS 474 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~~--~~~DPyvkv~l~~-----~~~kTk-v~~~t~~P~~~ 474 (477)
..=.|.|.|+.||.|+.+ +-.-|||+|.+-| .+++|+ +..+-+||.||
T Consensus 1063 ~p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn 1118 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWN 1118 (1267)
T ss_pred cceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCC
Confidence 345789999999999963 4566999998733 444544 45588999999
No 261
>PLN02964 phosphatidylserine decarboxylase
Probab=81.17 E-value=1.6 Score=47.27 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=38.3
Q ss_pred CcceEEEEEEeeeecCCCCCCCCcEEEE-EEcCeEeeeeeeeeccCcccee
Q 011813 426 SGAGLLSVLVQGAEDVEGENHNNPYAII-LYKGDKKRTKVSFLSLLYTYSL 475 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L~~~~~~DPyvkv-~l~~~~~kTkv~~~t~~P~~~~ 475 (477)
.-+|++.++|.+|+ . +..|||+.+ ++|-+..||.+.++|.+|+||.
T Consensus 51 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~ 97 (644)
T PLN02964 51 DFSGIALLTLVGAE-M---KFKDKWLACVSFGEQTFRTETSDSTDKPVWNS 97 (644)
T ss_pred cccCeEEEEeehhh-h---ccCCcEEEEEEecceeeeeccccccCCcccch
Confidence 36899999999998 2 346998776 5677777999999999999995
No 262
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=76.24 E-value=12 Score=30.83 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=44.9
Q ss_pred eeeeeeCCCCCCeeeeEEEEEeecC-------CCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCc--eEEEEecccc
Q 011813 301 KKTTVKKKNLNPEWNENFKLVVKEP-------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHET--KEFTLDLLKH 371 (477)
Q Consensus 301 ~kT~v~~~t~nP~WnE~f~f~v~~~-------~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~--~~~~~~l~~~ 371 (477)
..|.++. ..+|.+|-+-.|.|... .+..+.++++..- ....+.+|.+.+++..+..... ......+...
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~ 90 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVGV 90 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-BS
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEecc
Confidence 4666665 78999999888888632 2567999999875 2346689999999999874433 3334444321
Q ss_pred cCCCCCCCCccceEEEEEEEEE
Q 011813 372 TNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 372 ~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
+++.-|.|...++..
T Consensus 91 -------~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 91 -------SGEDFGTLEYWIRLR 105 (107)
T ss_dssp -------SS-TSEEEEEEEEEE
T ss_pred -------CCCeEEEEEEEEEec
Confidence 244789888887654
No 263
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=75.87 E-value=3.6 Score=44.72 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=36.5
Q ss_pred EEEEEEeeeecCCC-------CCCCCcEEEEEEcC-----eEeeeee-eeeccCccceec
Q 011813 430 LLSVLVQGAEDVEG-------ENHNNPYAIILYKG-----DKKRTKV-SFLSLLYTYSLQ 476 (477)
Q Consensus 430 ~L~V~V~~A~~L~~-------~~~~DPyvkv~l~~-----~~~kTkv-~~~t~~P~~~~~ 476 (477)
.|.|.|..+++++. ...+||||.|.+-| .+.||++ ..++-+|.|+..
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~ 676 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEE 676 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCe
Confidence 89999999997753 14689999999865 3339994 558888999843
No 264
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=73.32 E-value=11 Score=34.17 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=41.4
Q ss_pred ceeeeeeCCCCCCeeeeEEEEEeecC--CCCeEEEEEEecCCCCC------CCeeEEEEEECcc
Q 011813 300 WKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG------HDRLGMQLVPLKL 355 (477)
Q Consensus 300 ~~kT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~~~------d~~lG~~~v~L~~ 355 (477)
...|.|..++.+|.|+|++.+.++-. ....|.|+.|+.+.-.+ ...+|-+.+||-+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45788888999999999999988743 35679999998653221 2457888777754
No 265
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=72.06 E-value=1.3 Score=47.94 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=73.2
Q ss_pred cchHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHhhc-cCCceeeeEEEeEeeCCCCCCeEeeEEEEec-CCCeEEEEe
Q 011813 72 ERVDWLNRFLSDMWPYLDKA--ICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEP 147 (477)
Q Consensus 72 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~~~~~l~~~-~p~~~i~~i~~~~~~lG~~~P~i~~ir~~~~-~~~~~~le~ 147 (477)
|..-|||.++.++.--+.+. ..+.+++.++.++... .|.| ++.+-..++.-|..||.|++.++... ..+...++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 45789999999998655433 5666777788887775 5887 99999999999999999999999885 345567888
Q ss_pred eeeeecCCcEEEEEEE
Q 011813 148 ALRWAGNPNIVLVLKL 163 (477)
Q Consensus 148 ~~~~~~~~~i~l~~~~ 163 (477)
|+.|.||..+.++.++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999998877776654
No 266
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=71.91 E-value=1.4 Score=38.57 Aligned_cols=19 Identities=32% Similarity=0.204 Sum_probs=16.5
Q ss_pred eEeeeeeeeeccCccceec
Q 011813 458 DKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 458 ~~~kTkv~~~t~~P~~~~~ 476 (477)
.++||+++++|+||.||+.
T Consensus 35 ~~~kT~v~~~t~nP~wNE~ 53 (148)
T cd04010 35 DTKRTKVKKKTNNPQFDEA 53 (148)
T ss_pred cccCCccEeCCCCCccceE
Confidence 5669999999999999954
No 267
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=71.13 E-value=3.5 Score=27.26 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=9.7
Q ss_pred HHHHHhheeeeccC
Q 011813 22 LLVGFFLFIYSKPN 35 (477)
Q Consensus 22 ~~~~~~~~~~~~~~ 35 (477)
++++++++.|||+.
T Consensus 26 ~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 26 IVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHhheEEecc
Confidence 55677788788654
No 268
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=67.84 E-value=2.3 Score=33.55 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=42.4
Q ss_pred cCCchhHhhhCCCCCCceeCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 011813 49 ELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPI 103 (477)
Q Consensus 49 ~~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~~~i~~~~~~~ 103 (477)
+.|.+-++--|++||+|+--.|.-.-.-.|.+...+|-+.+.+++-.-+.++.++
T Consensus 26 k~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 26 KKDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred cccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 4555556667889999999999999999999999999999888863333334443
No 269
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=66.70 E-value=15 Score=40.98 Aligned_cols=107 Identities=15% Similarity=0.223 Sum_probs=75.9
Q ss_pred CCcEEEEEEcCcccCceeeeeeCCC-CCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCCCCceE
Q 011813 285 SDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE 363 (477)
Q Consensus 285 ~dpyv~v~l~~~~~~~~kT~v~~~t-~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~~~~~ 363 (477)
.++|+.+.+..... .+|....+. .+|.|++.|....... ...+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhh--hchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 58999999875544 366666666 7899999988777654 3578888888887776789999999999998877777
Q ss_pred EEEecccccCCCCCCCCccceEEEEEEEEEecccC
Q 011813 364 FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (477)
Q Consensus 364 ~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~ 398 (477)
.+++++..-. ......-.+++.+.|.+....
T Consensus 215 ~~~~Il~~d~----~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 215 GWFPILDNDG----KPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred ceeeeeccCC----ccccCCcccceEEeeEeechh
Confidence 7776653211 111222356777888886653
No 270
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.13 E-value=97 Score=27.26 Aligned_cols=74 Identities=20% Similarity=0.131 Sum_probs=44.3
Q ss_pred cCCCCcEEEEEE--c--------CcccCceeeeeeCCCCCC-eeeeEEEEEeec--CC-CCeEEEEEEecCCCCCCCeeE
Q 011813 282 LGTSDPYVKLSL--T--------GEKLPWKKTTVKKKNLNP-EWNENFKLVVKE--PE-SQILQLQVFDWDKVGGHDRLG 347 (477)
Q Consensus 282 ~g~~dpyv~v~l--~--------~~~~~~~kT~v~~~t~nP-~WnE~f~f~v~~--~~-~~~L~v~V~d~d~~~~d~~lG 347 (477)
.-.+|-||+... + ++.--++-+.-.++-.|| +||--++..... +. -..|.+.||..|..++|-..|
T Consensus 23 Pe~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~G 102 (187)
T KOG4027|consen 23 PEESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTG 102 (187)
T ss_pred CCCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeee
Confidence 345688888766 1 111111112222233344 677655555543 21 457999999999999999999
Q ss_pred EEEEECcc
Q 011813 348 MQLVPLKL 355 (477)
Q Consensus 348 ~~~v~L~~ 355 (477)
-..+++-.
T Consensus 103 Yg~~hiP~ 110 (187)
T KOG4027|consen 103 YGMLHIPT 110 (187)
T ss_pred eeeEecCc
Confidence 88776543
No 271
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=51.13 E-value=11 Score=32.13 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.2
Q ss_pred CCCcEEEEEE----cCeEeeeeeeeeccCccce
Q 011813 446 HNNPYAIILY----KGDKKRTKVSFLSLLYTYS 474 (477)
Q Consensus 446 ~~DPyvkv~l----~~~~~kTkv~~~t~~P~~~ 474 (477)
..|+||++.+ ++++++|+++.+|.-|+|+
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~ 64 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFN 64 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCcc
Confidence 4799999985 3456699999999999887
No 272
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.92 E-value=4.5 Score=43.55 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=56.8
Q ss_pred CCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEEecCCCCCCCeeEEEEEECcccCC-CCc
Q 011813 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP-HET 361 (477)
Q Consensus 283 g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~-~~~ 361 (477)
...+||+.+.+.-.. ...+.+.+.+.+|.|+|+|...+.. ...+.+.||.......+...-.+.+-.+++.. ...
T Consensus 26 ~al~~y~~v~vk~~~--~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~ 101 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQ--GAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALE 101 (694)
T ss_pred hhhhhhheeccceee--cccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhh
Confidence 345888888775322 2244456789999999999999764 46788999987644333333333322222221 112
Q ss_pred eEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 011813 362 KEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (477)
Q Consensus 362 ~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (477)
...|.. .++.|++...+.+..
T Consensus 102 ~~~w~~------------~~~~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 102 QRLWVL------------IEELGTLLKPAALTG 122 (694)
T ss_pred hhhccc------------cccccceeeeecccC
Confidence 233433 234577777777665
No 273
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=46.61 E-value=21 Score=39.73 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=55.8
Q ss_pred cccCCceEEEEEEEEccccccccccCCCCcEEEEEEcCc--ccCceeeeeeCCCCCCeeeeEEEEEeecCCCCeEEEEEE
Q 011813 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (477)
Q Consensus 258 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~ 335 (477)
..+...|.+.+.+++|..++. ...-||...+..- -..+.+|+++.+|..|.||++++..+.. .+.+++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhh
Confidence 566778999999999998864 3467887766421 2234689999999999999999888753 566777777
Q ss_pred ecC
Q 011813 336 DWD 338 (477)
Q Consensus 336 d~d 338 (477)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 754
No 274
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=39.37 E-value=25 Score=28.71 Aligned_cols=43 Identities=28% Similarity=0.396 Sum_probs=34.9
Q ss_pred CchhHhhhCCCCCCceeCCCCcchHHHHHHHHHHhhhHHHHHH
Q 011813 51 DTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAIC 93 (477)
Q Consensus 51 ~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 93 (477)
|..-++--|++||+|+.-.|..-...++.+-..+|-+.+.++.
T Consensus 28 Dt~l~dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 28 DTPLMDVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred CCchhheecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 3333333567999999999999999999999999998888774
No 275
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=34.83 E-value=18 Score=25.06 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=12.6
Q ss_pred hHHHHHHHhheeeeccCCc
Q 011813 19 PLGLLVGFFLFIYSKPNDD 37 (477)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~r 37 (477)
++++.+|.++|.|+.++|+
T Consensus 19 ~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHhCCCcch
Confidence 3345667788888876553
No 276
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=34.73 E-value=38 Score=37.81 Aligned_cols=51 Identities=22% Similarity=0.100 Sum_probs=40.2
Q ss_pred cCcceEEEEEEeeeecCCCCCCCCcEEEEEEcC-------eEeeeeeee-eccCccceec
Q 011813 425 LSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG-------DKKRTKVSF-LSLLYTYSLQ 476 (477)
Q Consensus 425 ~~~~g~L~V~V~~A~~L~~~~~~DPyvkv~l~~-------~~~kTkv~~-~t~~P~~~~~ 476 (477)
..-++.++|.|++++=|-. .....||.|.+-| ++.||+++. ++.||+|+.+
T Consensus 699 gvIA~t~sV~VISgqFLSd-rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~ee 757 (1189)
T KOG1265|consen 699 GVIAATLSVTVISGQFLSD-RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEE 757 (1189)
T ss_pred ceEEeeEEEEEEeeeeccc-cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccC
Confidence 3478899999999998865 3577999999854 333888887 8899999853
No 277
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=33.71 E-value=16 Score=28.48 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=18.9
Q ss_pred hcccccchhHHHHHHHhheeeec--cCCcccccccccccccC
Q 011813 11 LGFGFIGLPLGLLVGFFLFIYSK--PNDDQVEEPLVTPLCEL 50 (477)
Q Consensus 11 ~g~~~~g~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~ 50 (477)
-|+|.+++++++++-..+.+|+. ..|||+|.+..|+.--+
T Consensus 31 ~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPvI~~ 72 (94)
T PF05393_consen 31 PNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYRPVIGL 72 (94)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccc
Confidence 45665555555432222222333 22333566677766543
No 278
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=32.04 E-value=5.1e+02 Score=26.01 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=65.6
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEEcCcccCceeeeeeCCCCCC--eeeeEEEEEeecCCCCeEEEEEEecCCCC
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP--EWNENFKLVVKEPESQILQLQVFDWDKVG 341 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP--~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 341 (477)
=-|-|.|.+-.++.. ...-|+.+..|.... +|..+.-+..- .-.|.....+.. ...+|++.+|-.. +.
T Consensus 58 F~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~---TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKk-Lv 127 (508)
T PTZ00447 58 FYLLVKINEIFNINK-----YKHIYIIFSTDKYDF---TTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTK-LT 127 (508)
T ss_pred eeEEEEehhhhcccc-----ceeEEEEEEcCceEE---EccccccCcCceEEEeeeeeeeeee-cCceEEEEEEecc-cc
Confidence 346677777665543 346788888875443 34332222211 122333333433 4568999999876 45
Q ss_pred CCCeeEEEEEECcc--cCCCCceEEEEecccccCCCCCCCCccceEEEEEEE
Q 011813 342 GHDRLGMQLVPLKL--LTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (477)
Q Consensus 342 ~d~~lG~~~v~L~~--l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (477)
+...||.+.+.++. +...-++..|+-+.+ .+...++|.|++.
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k--------DGq~~cRIqLSFh 171 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFK--------DGQEICKVQMSFY 171 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEec--------CCceeeeEEEEeh
Confidence 67789999998875 333445667776644 3566777777654
No 279
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=31.34 E-value=72 Score=28.16 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=37.1
Q ss_pred CcceEEEEEEeeeecC----C---CCCCCCcEEEEEEcCeEeeeeeeeeccCccceec
Q 011813 426 SGAGLLSVLVQGAEDV----E---GENHNNPYAIILYKGDKKRTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 426 ~~~g~L~V~V~~A~~L----~---~~~~~DPyvkv~l~~~~~kTkv~~~t~~P~~~~~ 476 (477)
+....|.+.|.++|-. . +...+--++-+.++++..+|+.+..+++|.++..
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~ 63 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEE 63 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCc
Confidence 3678999999998743 2 2223334444567899999999999999998843
No 280
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=29.67 E-value=4e+02 Score=23.59 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=50.1
Q ss_pred EEEEccccccccccCCCCcEEEEEEc--Cc-----ccC-ceeeeeeCC-----CCCCeeeeEEEEEeec--CC-CCeEEE
Q 011813 269 KVVRASKLLKKDFLGTSDPYVKLSLT--GE-----KLP-WKKTTVKKK-----NLNPEWNENFKLVVKE--PE-SQILQL 332 (477)
Q Consensus 269 ~v~~A~~L~~~d~~g~~dpyv~v~l~--~~-----~~~-~~kT~v~~~-----t~nP~WnE~f~f~v~~--~~-~~~L~v 332 (477)
.|.+|.+. ...+-||+..+. ++ ... ...|.+... +..-.||.-|.+.... +. -..|.+
T Consensus 7 ~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 45677654 334678888773 11 111 345555432 2345799877776553 22 368999
Q ss_pred EEEecCCCCCCCeeEEEEEEC
Q 011813 333 QVFDWDKVGGHDRLGMQLVPL 353 (477)
Q Consensus 333 ~V~d~d~~~~d~~lG~~~v~L 353 (477)
+||..|..+++...|-..+.|
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEe
Confidence 999999999999887766655
No 281
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.52 E-value=20 Score=24.77 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=10.9
Q ss_pred hHHHHHHHhheeeeccCC
Q 011813 19 PLGLLVGFFLFIYSKPND 36 (477)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (477)
++++.+|++.|.|+++++
T Consensus 18 ~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHcccch
Confidence 333556777777776544
No 282
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=28.36 E-value=1.1e+02 Score=34.42 Aligned_cols=71 Identities=23% Similarity=0.188 Sum_probs=44.9
Q ss_pred eEEEEEEEEccccccccccCCCCcEEEEEE----cCcccCc-eeeeeeCCCCCCeeeeEEEEEee--cC-CCCeEEEEEE
Q 011813 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPW-KKTTVKKKNLNPEWNENFKLVVK--EP-ESQILQLQVF 335 (477)
Q Consensus 264 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~l----~~~~~~~-~kT~v~~~t~nP~WnE~f~f~v~--~~-~~~~L~v~V~ 335 (477)
.-++|+++++.+.. .....|-+|.|.. |++..-+ +.|.-+..+.+|.||+..+|.+. +. ....|.+.||
T Consensus 343 ~~frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 45788888877653 2234466665544 4444332 34444455889999999888875 33 3567888888
Q ss_pred ec
Q 011813 336 DW 337 (477)
Q Consensus 336 d~ 337 (477)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 64
No 283
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=28.03 E-value=21 Score=29.33 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=2.2
Q ss_pred hhcccccchhHHHHHHHhheeeeccC
Q 011813 10 VLGFGFIGLPLGLLVGFFLFIYSKPN 35 (477)
Q Consensus 10 ~~g~~~~g~~~~~~~~~~~~~~~~~~ 35 (477)
..|.|++=+.+|+++.+-||.+.||.
T Consensus 26 AaGIGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 26 AAGIGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp --SSS---------------------
T ss_pred hccceeHHHHHHHHHHHhheeeeecc
Confidence 35777666777776666688665543
No 284
>PLN02352 phospholipase D epsilon
Probab=27.55 E-value=40 Score=37.42 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=21.6
Q ss_pred CcEEEEEEcCeEe-eeeeeeeccCccceec
Q 011813 448 NPYAIILYKGDKK-RTKVSFLSLLYTYSLQ 476 (477)
Q Consensus 448 DPyvkv~l~~~~~-kTkv~~~t~~P~~~~~ 476 (477)
||||.|.+++.+. || .++.||.|++.
T Consensus 37 ~~y~tv~~~~~~v~rt---~~~~~p~w~e~ 63 (758)
T PLN02352 37 ATYVTIKIGNKKVAKT---SHEYDRVWNQT 63 (758)
T ss_pred CceEEEEeCCcEEecC---CCCCCCccccc
Confidence 9999999999887 88 55668888753
No 285
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=25.32 E-value=4.2e+02 Score=27.47 Aligned_cols=58 Identities=10% Similarity=0.186 Sum_probs=30.8
Q ss_pred EEEEEEEEEeecCCCCCceeEEEEEcCCCceEEEEEEEeCcccccccchhHHHHHHHHHhhhccccCC
Q 011813 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWP 244 (477)
Q Consensus 177 ~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P 244 (477)
+.|++.+.=+|..+. --+.+.+ -++||++..-+ . -.-...-+.+..|.+.|++.++.|
T Consensus 309 ~~G~i~l~G~P~yD~--~~~~l~l-----~dld~~~~t~~--~-l~~~a~wl~~~~i~~~i~~~~~~~ 366 (427)
T PF14356_consen 309 LNGTIYLSGRPVYDP--ATQTLRL-----EDLDFDLDTKN--F-LLKTAAWLLHGRIRKAIEEKLVFD 366 (427)
T ss_pred EEEEEEEEEEEEECC--CCCEEEE-----EeeEEEecccc--h-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 556666555554443 1122332 46777776432 1 122234566777777777776654
No 286
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=24.67 E-value=36 Score=29.74 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=4.1
Q ss_pred hheeeeccCC
Q 011813 27 FLFIYSKPND 36 (477)
Q Consensus 27 ~~~~~~~~~~ 36 (477)
++|+|+.+.+
T Consensus 69 lvf~~c~r~k 78 (154)
T PF04478_consen 69 LVFIFCIRRK 78 (154)
T ss_pred hheeEEEecc
Confidence 3444444433
No 287
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.47 E-value=30 Score=29.39 Aligned_cols=21 Identities=38% Similarity=0.773 Sum_probs=14.1
Q ss_pred ccchhHHHHHHHhheeeeccC
Q 011813 15 FIGLPLGLLVGFFLFIYSKPN 35 (477)
Q Consensus 15 ~~g~~~~~~~~~~~~~~~~~~ 35 (477)
++|+++|+++|+++..+..+.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 466888888887766554443
No 288
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=22.82 E-value=15 Score=39.04 Aligned_cols=44 Identities=20% Similarity=0.433 Sum_probs=33.8
Q ss_pred cccccccCCchhHhhhCCCCCC-ceeCCCCcchHHHHHHHHHHhh
Q 011813 43 LVTPLCELDTIPLFDLLPEIPL-WVKNPDYERVDWLNRFLSDMWP 86 (477)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~p~-w~~~~d~E~~~WlN~~l~~~Wp 86 (477)
.+..+.....++++..+.++|- -+.+++.-.++|.|-++....+
T Consensus 65 ~i~~ls~~~~~~~~~al~nmPiGii~~~e~~~veW~Npf~~~if~ 109 (655)
T COG3887 65 YISYLSYQAEKSLEEALTNMPIGIILFNETNKVEWVNPFASKIFN 109 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEcCCCceEEecHHHHHhcC
Confidence 4555555555677788888884 4667899999999999998887
No 289
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=22.56 E-value=8e+02 Score=24.68 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=57.9
Q ss_pred CceEEEEEEEEcccccccc------ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeee--eEEEEEeecC--------
Q 011813 262 PVGILHVKVVRASKLLKKD------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN--ENFKLVVKEP-------- 325 (477)
Q Consensus 262 ~~G~L~V~v~~A~~L~~~d------~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~Wn--E~f~f~v~~~-------- 325 (477)
-.=+|.|++..|+||...- ..+...-|...++.+... .|..-....+|.|. +.-.+.+...
T Consensus 190 d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~V---t~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf 266 (340)
T PF12416_consen 190 DLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDV---TTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYF 266 (340)
T ss_pred ceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEe---EeeeccccCCCCcCeeeeeEEeecccHHHHHHHH
Confidence 3456889999999986541 112345667777766654 55666677788664 3322555422
Q ss_pred -CCCeEEEEEEecCCCCCCCeeEEEEEECcccCCC
Q 011813 326 -ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (477)
Q Consensus 326 -~~~~L~v~V~d~d~~~~d~~lG~~~v~L~~l~~~ 359 (477)
....|.|.++.. +..||.+.+++..+.+.
T Consensus 267 ~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 267 QQIPKLQIHLCCG-----NQSLGSTSVPLQPLLPK 296 (340)
T ss_pred hhCCCeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence 134677777763 45799999999998643
No 290
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=22.32 E-value=24 Score=37.78 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=45.7
Q ss_pred ceEEEEEEEEccccccc--c--ccCCCCcEEEEEEcCcccCceeeeeeCCCCCCeeeeEEEEEeecCC-CCeEEEEEEec
Q 011813 263 VGILHVKVVRASKLLKK--D--FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDW 337 (477)
Q Consensus 263 ~G~L~V~v~~A~~L~~~--d--~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~-~~~L~v~V~d~ 337 (477)
.|....+++.|.++++- + ..-+.+|++...++.+.+ +|+....+.+|+|||. .+.+.+.. ...|...+-++
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~f---rt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~ 354 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTF---RTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGY 354 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhh---hhhhhccccccccccc-ccccccchhhHHHhhhcccc
Confidence 34545556666665431 1 123458899999987765 8888899999999997 55554332 22344444444
Q ss_pred CCC
Q 011813 338 DKV 340 (477)
Q Consensus 338 d~~ 340 (477)
+..
T Consensus 355 ~~~ 357 (975)
T KOG2419|consen 355 CEL 357 (975)
T ss_pred ccc
Confidence 433
No 291
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=22.18 E-value=84 Score=28.56 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCchhHhhhCCCCCCceeCCCCcchHHHHHHHHHHhhhHHHHHHHHHH
Q 011813 50 LDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVR 97 (477)
Q Consensus 50 ~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~~~i~ 97 (477)
.+.+.|.+++ |.|.+..+|||.++ ||.+...+.+.+.
T Consensus 65 idr~~L~~~v--------f~~~~~~~~L~~i~---hP~v~~~~~~~~~ 101 (194)
T PRK00081 65 LDRAKLRELV--------FSDPEARKKLEAIL---HPLIREEILEQLQ 101 (194)
T ss_pred cCHHHHHHHH--------hCCHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3445555553 78999999999998 8887777765553
No 292
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.08 E-value=42 Score=28.33 Aligned_cols=22 Identities=27% Similarity=0.683 Sum_probs=12.1
Q ss_pred chhhhhhhhcccccchhHHHHHHHhhe
Q 011813 3 FLSSVLGVLGFGFIGLPLGLLVGFFLF 29 (477)
Q Consensus 3 ~~~~~~~~~g~~~~g~~~~~~~~~~~~ 29 (477)
+..|++.. +|+++|+++|+++.
T Consensus 5 ~~~W~~a~-----igLvvGi~IG~li~ 26 (138)
T COG3105 5 FMTWEYAL-----IGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHH
Confidence 34555543 44666677775543
No 293
>PRK11677 hypothetical protein; Provisional
Probab=22.02 E-value=42 Score=28.82 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=12.3
Q ss_pred hhhhhhcccccchhHHHHHHHhheeee
Q 011813 6 SVLGVLGFGFIGLPLGLLVGFFLFIYS 32 (477)
Q Consensus 6 ~~~~~~g~~~~g~~~~~~~~~~~~~~~ 32 (477)
|+++..| +++|+++|+++..+-
T Consensus 3 W~~a~i~-----livG~iiG~~~~R~~ 24 (134)
T PRK11677 3 WEYALIG-----LVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHH-----HHHHHHHHHHHHhhc
Confidence 6665544 555566666555443
No 294
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=21.52 E-value=1.8e+02 Score=25.62 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=31.0
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEE--cCeEe----eeeeeeeccCcccee
Q 011813 429 GLLSVLVQGAEDVEGENHNNPYAIILY--KGDKK----RTKVSFLSLLYTYSL 475 (477)
Q Consensus 429 g~L~V~V~~A~~L~~~~~~DPyvkv~l--~~~~~----kTkv~~~t~~P~~~~ 475 (477)
..++|.|++|.+++-+..+|-|+++.+ |++.. .|+-+.- .++.||.
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnE 59 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNE 59 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccce
Confidence 478999999999988777899999854 44333 3332222 3566774
No 295
>PRK00523 hypothetical protein; Provisional
Probab=20.96 E-value=51 Score=24.86 Aligned_cols=20 Identities=35% Similarity=0.668 Sum_probs=12.9
Q ss_pred hcccccchhHHHHHHHhhee
Q 011813 11 LGFGFIGLPLGLLVGFFLFI 30 (477)
Q Consensus 11 ~g~~~~g~~~~~~~~~~~~~ 30 (477)
++++++++.+|+++|+|+..
T Consensus 8 I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566667777777766543
No 296
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=20.83 E-value=1.4e+02 Score=30.69 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=30.2
Q ss_pred eeEEEEEECcc-cCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 011813 345 RLGMQLVPLKL-LTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (477)
Q Consensus 345 ~lG~~~v~L~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (477)
.+|.+.++++. +..+...+.|+++....+ .....|.+ ++++|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~-----~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDN-----KSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCC-----CCcCcceE-EEEEee
Confidence 48999999999 667778889998754321 13345666 677765
No 297
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=20.57 E-value=92 Score=30.61 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=36.2
Q ss_pred cceEEEEEEeeeecCCC----CC-CCCcEEEEEEcCeEe-eeeeeeeccCccce
Q 011813 427 GAGLLSVLVQGAEDVEG----EN-HNNPYAIILYKGDKK-RTKVSFLSLLYTYS 474 (477)
Q Consensus 427 ~~g~L~V~V~~A~~L~~----~~-~~DPyvkv~l~~~~~-kTkv~~~t~~P~~~ 474 (477)
.+|+|.+.+..+++|.- +| .-+-||.+...-+.+ ||.+...-+.+.|.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~ 102 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWA 102 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccch
Confidence 78999999999999963 23 589999998875444 77777655555554
Done!