BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011814
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 221/352 (62%), Gaps = 19/352 (5%)
Query: 73 NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRY 132
NPID CW+ D +W NR +LADC +GFG MGGKGG++Y VT S+DD+ V+P PGTLRY
Sbjct: 2 NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 133 AVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGG-CITLQYISNVXXXX 191
+ + LWI+F NM IKL L +KT+DGRGA+VH+ GG C+ ++ +S+V
Sbjct: 61 GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 192 XXXXXCVES--GNANVRSS----PTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGL 245
C S G+ V S P H DGD I++ + WIDH SLS C DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 246 IDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRR 305
ID +GSTGITISNN+F +H++VMLLGH D Y D M+VT+AFN FG QRMPR R
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 306 GYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVD-TAESHWRDWN 364
G +HV NN++ W +YAIGGS NPTI S+GN +TAP+ KEVTKR+ + S +W
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWV 295
Query: 365 WRSEGDVMVNGAFFVASGAGVEVKY---ERAFSVEPKSAELIEQLTWHSGVL 413
WRS D +NGA+FV+SG E AF VE +A QLT ++GV+
Sbjct: 296 WRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAA--PQLTKNAGVV 345
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 217 KSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDD 276
K D D I++ S +WIDH + + DG +D S IT+S N F H++V L+G SD
Sbjct: 113 KYDFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDK 172
Query: 277 YLPDSGMQ---VTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTE----------WEMYAI 323
P+ Q VT N+F + L+QRMPR R G HV NN ++ + +Y +
Sbjct: 173 EDPEQAGQAYKVTYHHNYF-KNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGV 231
Query: 324 GGSGNPTINSQGNRY 338
+ ++ +GN +
Sbjct: 232 ASAMGAKVHVEGNYF 246
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 19/114 (16%)
Query: 218 SDGDGISIFGSKDLWIDHCSLS-----------------HCKDGLIDAVMGSTGITISNN 260
S+ D ISI GS +WIDH + + DG +D S ITIS N
Sbjct: 187 SEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYN 246
Query: 261 YFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCRRGYIHVVNN 313
F++H++V L+G SD + DSG ++VT+ N++ + + QR+PR R G +H+ NN
Sbjct: 247 VFTNHDKVTLIGASDSRMADSGHLRVTLHHNYY-KNVTQRLPRVRFGQVHIYNN 299
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 42/217 (19%)
Query: 227 GSKDLWIDHCSLSHCK-----------------DGLIDAVMGSTGITISNNYFSHHNEVM 269
G+ +WIDH ++S DG +D GS +TISN+ H++ M
Sbjct: 151 GAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTM 210
Query: 270 LLGHSD-DYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFT--------EWEM 320
L+GHSD + D G FN+ ++ +R PR R G IH NN F ++
Sbjct: 211 LIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQY 270
Query: 321 -YAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWR--SEGDVMVNGAF 377
+ IG SG ++ S+GN +T N +A + K V + +N S+ ++NG+
Sbjct: 271 SFGIGTSG--SVLSEGNSFTIA-NLSASKACKVV-------KKFNGSIFSDNGSVLNGSA 320
Query: 378 FVASGAGVEV---KYERAFSVEPKSAELIEQLTWHSG 411
SG G K + V+P + EL + +T ++G
Sbjct: 321 VDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAG 357
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 42/217 (19%)
Query: 227 GSKDLWIDHCSLSHCK-----------------DGLIDAVMGSTGITISNNYFSHHNEVM 269
G+ +WIDH ++S DG +D GS +TISN+ H++ M
Sbjct: 151 GAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTM 210
Query: 270 LLGHSD-DYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFT--------EWEM 320
L+GH+D + D G FN+ ++ +R PR R G IH NN F ++
Sbjct: 211 LIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQY 270
Query: 321 -YAIGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWR--SEGDVMVNGAF 377
+ IG SG ++ S+GN +T N +A + K V + +N S+ ++NG+
Sbjct: 271 SFGIGTSG--SVLSEGNSFTIA-NLSASKACKVV-------KKFNGSIFSDNGSVLNGSA 320
Query: 378 FVASGAGVEV---KYERAFSVEPKSAELIEQLTWHSG 411
SG G K + V+P + EL + +T ++G
Sbjct: 321 VDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAG 357
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 19/113 (16%)
Query: 221 DGISIFGSKDLWIDHCSLS-----------------HCKDGLIDAVMGSTGITISNNYFS 263
D I+I G +WIDHC+ + DG DA G+ IT+S NY+
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 264 HHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDF 315
H++ + G SD D G +++T+ N + + +VQR PR R G +HV NN +
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYY 316
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 221 DGISIFGSKDLWIDHCSLS-----------------HCKDGLIDAVMGSTGITISNNYFS 263
D I+I G +WIDHC+ + DG DA G+ IT+S NY+
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 264 HHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDF 315
H+ + G SD D G +++T+ N + + +VQR PR R G +HV NN +
Sbjct: 244 DHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYY 295
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 19/113 (16%)
Query: 221 DGISIFGSKDLWIDHCSLS-----------------HCKDGLIDAVMGSTGITISNNYFS 263
D I+I G +WIDHC+ + DG DA G+ IT+S NY+
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 264 HHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDF 315
H++ + G SD D G +++T+ N + + +VQ+ PR R G +HV NN +
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQKAPRVRFGQVHVYNNYY 316
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 19/111 (17%)
Query: 221 DGISIFGSKDLWIDHCSLS-----------------HCKDGLIDAVMGSTGITISNNYFS 263
D I+I G +WIDHC+ + DG DA G+ IT+S NY+
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 264 HHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCRRGYIHVVNN 313
H++ + G SD D G +++T+ N + + +VQ PR R G +HV NN
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQAAPRVRFGQVHVYNN 293
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 219 DGDGISIFGSKD-----LWIDH----CSLSHCK-------DGLIDAVMGSTGITISNNYF 262
D D IS+ G+ +W+DH SL+ C DG ID G +T+S NY
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 263 SHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDF 315
++ +V L G+SD +S + T N F E + R+P RRG H+ NN F
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRRGLSHIYNNYF 223
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 20/112 (17%)
Query: 221 DGISIFGSKDLWIDHCSLSHCK-----------------DGLIDAVMGSTGITISNNYFS 263
D I S ++W+DH ++S DG +D GS +TIS + F
Sbjct: 134 DAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFE 193
Query: 264 HHNEVMLLGHSD-DYLPDSG-MQVTIAFNHFGEKLVQRMPRCRRGYIHVVNN 313
H++ +L+GHSD + DSG ++VT N F +++ +R PR R G IH NN
Sbjct: 194 LHDKTILIGHSDSNGSQDSGKLRVTFHNNVF-DRVTERAPRVRFGSIHAYNN 244
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 219 DGDGISIFGSKD-----LWIDH----CSLSHCK-------DGLIDAVMGSTGITISNNYF 262
D D IS+ G+ +W+DH SL+ C DG ID G +T+S NY
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 263 SHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDF 315
++ +V L G+SD +S + T N F E + R+P R G H+ NN F
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYF 223
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 219 DGDGISIFGSKD-----LWIDH----CSLSHCK-------DGLIDAVMGSTGITISNNYF 262
D D IS+ G+ +W+DH SL+ C DG ID G +T+S NY
Sbjct: 112 DADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYV 171
Query: 263 SHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDF 315
++ +V L G+SD +S + T N F E + R+P R G H+ NN F
Sbjct: 172 YNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYF 223
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 219 DGDGISIF---GSKDLWIDHCSL---------SHCKDGLIDAVMGSTGITISNNYFSHHN 266
+G+G +I SK++WIDH S DGL+D + IT+S N F +H
Sbjct: 117 EGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHW 176
Query: 267 EVMLLGHSDD--YLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAI 323
+ ML+GH+D+ PD ++T N+F L R+P R +H+ NN F + AI
Sbjct: 177 KTMLVGHTDNASLAPD---KITYHHNYF-NNLNSRVPLIRYADVHMFNNYFKDINDTAI 231
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 219 DGDGISIFGSKDLWIDHCSL---SHCKDGL----------IDAVMGSTGITISNNYFSHH 265
DGD I + S ++W+DH L +H DG +D S +T+S NY
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 266 NEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGG 325
+V L G S D+G +T N++ + + R+P R G +H NN +T I G
Sbjct: 189 KKVGLDGSSS---SDTGRNITYHHNYYND-VNARLPLQRGGLVHAYNNLYTN-----ITG 239
Query: 326 SG 327
SG
Sbjct: 240 SG 241
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 219 DGDGISIFGSKDLWIDHCSL---SHCKDGL----------IDAVMGSTGITISNNYFSHH 265
DGD I + S ++W+DH L +H DG +D S +T+S NY
Sbjct: 129 DGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGV 188
Query: 266 NEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGG 325
+V L G S D+G +T N++ + + ++P R G +H NN +T I G
Sbjct: 189 KKVGLDGSSS---SDTGRNITYHHNYYND-VNAKLPLQRGGLVHAYNNLYTN-----ITG 239
Query: 326 SG 327
SG
Sbjct: 240 SG 241
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 220 GDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTG---ITISNNYFSHHNE--VMLLGHS 274
GD I++ S +WIDH + + + G V+G++ +TIS + ++ GH
Sbjct: 153 GDAITVDDSDLVWIDHVTTA--RIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHH 210
Query: 275 --DDYLPDSGMQVTIAFNHFGEKLVQRMPRCR-RGYIHVVNNDFTEWEMYA 322
YL S VT+ N+F L RMP+ + +H VNN F ++ +A
Sbjct: 211 YWGVYLDGSNDMVTLKGNYF-YNLSGRMPKVQGNTLLHAVNNLFHNFDGHA 260
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 73 NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSP 125
NP D W D R LA CV+G YA+GG+ TDSS D +P
Sbjct: 45 NPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 73 NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSP 125
NP D W D R LA CV+G YA+GG+ TDSS D +P
Sbjct: 46 NPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 98
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 73 NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSP 125
NP + W D R LA CV+G YA+GG+ TDSS D +P
Sbjct: 45 NPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 97
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 73 NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSP 125
NP + W D R LA CV+G YA+GG+ TDSS D +P
Sbjct: 39 NPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 91
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 73 NPIDDCWKCDPDWANNRQRLADCVIGFGQYAMGGKGGEYYIVTDSSDDDAVSP 125
NP + W D R LA CV+G YA+GG+ TDSS D +P
Sbjct: 38 NPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNP 90
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
pdb|1E5X|B Chain B, Structure Of Threonine Synthase From Arabidopsis Thaliana
Length = 486
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 222 GISIFGSKDLWIDHCSLSH 240
G G DLW+ HC +SH
Sbjct: 140 GKQFLGXNDLWVKHCGISH 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,449,495
Number of Sequences: 62578
Number of extensions: 688611
Number of successful extensions: 1347
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 33
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)