Query 011814
Match_columns 477
No_of_seqs 354 out of 1013
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 1E-54 2.2E-59 430.6 25.4 273 101-414 46-343 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 9E-50 2E-54 381.1 13.9 191 138-338 1-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 1.1E-45 2.4E-50 350.5 21.9 171 154-341 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.0 7.5E-08 1.6E-12 98.6 22.4 238 131-384 2-286 (314)
5 TIGR03805 beta_helix_1 paralle 98.4 2.4E-05 5.2E-10 80.3 19.6 158 156-323 58-247 (314)
6 PLN02218 polygalacturonase ADP 98.3 2.5E-05 5.5E-10 83.5 16.9 121 179-320 218-342 (431)
7 PLN03003 Probable polygalactur 98.2 3.6E-05 7.8E-10 82.8 16.5 150 140-304 105-269 (456)
8 TIGR03808 RR_plus_rpt_1 twin-a 98.2 3.3E-05 7.1E-10 82.5 15.2 47 219-267 238-285 (455)
9 PF13229 Beta_helix: Right han 98.2 1.7E-05 3.7E-10 69.8 10.9 132 179-342 3-138 (158)
10 PF14592 Chondroitinas_B: Chon 98.2 4.4E-05 9.6E-10 81.2 15.6 169 127-300 4-215 (425)
11 PLN02188 polygalacturonase/gly 98.1 6.4E-05 1.4E-09 79.8 16.2 105 179-304 181-286 (404)
12 PLN02793 Probable polygalactur 98.1 6.5E-05 1.4E-09 80.7 16.1 105 179-304 203-308 (443)
13 PLN02155 polygalacturonase 98.0 0.00012 2.7E-09 77.5 14.6 104 179-303 171-275 (394)
14 PLN02218 polygalacturonase ADP 98.0 0.0003 6.4E-09 75.4 17.7 137 178-345 194-349 (431)
15 PLN03010 polygalacturonase 97.9 0.00057 1.2E-08 72.9 18.3 114 218-339 205-322 (409)
16 TIGR03808 RR_plus_rpt_1 twin-a 97.9 0.00069 1.5E-08 72.6 18.1 117 128-264 55-177 (455)
17 PF00295 Glyco_hydro_28: Glyco 97.8 0.00014 3.1E-09 74.7 11.6 132 136-304 89-223 (326)
18 PLN02480 Probable pectinestera 97.7 0.01 2.3E-07 62.0 23.4 137 128-292 61-215 (343)
19 PLN03010 polygalacturonase 97.7 0.0022 4.7E-08 68.5 18.5 154 160-345 139-314 (409)
20 PF13229 Beta_helix: Right han 97.7 0.00068 1.5E-08 59.6 12.4 128 179-338 26-158 (158)
21 PF05048 NosD: Periplasmic cop 97.6 0.0025 5.5E-08 61.7 16.5 126 179-338 38-165 (236)
22 PF05048 NosD: Periplasmic cop 97.6 0.0012 2.6E-08 64.0 13.5 130 176-341 14-144 (236)
23 PLN03003 Probable polygalactur 97.6 0.0012 2.6E-08 71.2 13.9 136 159-317 112-261 (456)
24 PLN02155 polygalacturonase 97.4 0.0036 7.8E-08 66.5 14.5 142 140-318 107-269 (394)
25 PLN02793 Probable polygalactur 97.3 0.0036 7.8E-08 67.5 14.3 136 178-344 179-333 (443)
26 PF12708 Pectate_lyase_3: Pect 97.2 0.0082 1.8E-07 56.4 13.9 103 129-247 20-139 (225)
27 PF01696 Adeno_E1B_55K: Adenov 97.2 0.032 6.9E-07 59.1 18.6 175 130-343 57-242 (386)
28 PF07602 DUF1565: Protein of u 96.9 0.045 9.8E-07 54.9 16.6 187 128-339 16-240 (246)
29 PF00295 Glyco_hydro_28: Glyco 96.9 0.0093 2E-07 61.5 11.6 108 156-293 62-184 (326)
30 COG3420 NosD Nitrous oxidase a 96.9 0.04 8.7E-07 57.5 15.8 70 179-264 123-192 (408)
31 PLN02304 probable pectinestera 96.8 0.48 1E-05 50.4 23.6 136 129-292 89-245 (379)
32 PLN02188 polygalacturonase/gly 96.6 0.028 6.1E-07 60.0 13.3 168 140-344 114-313 (404)
33 PLN02197 pectinesterase 96.6 0.031 6.8E-07 62.3 13.9 153 82-265 244-425 (588)
34 PLN02682 pectinesterase family 96.6 0.83 1.8E-05 48.5 23.4 127 129-274 84-237 (369)
35 PLN02217 probable pectinestera 96.5 0.96 2.1E-05 51.5 24.5 113 129-264 264-397 (670)
36 smart00656 Amb_all Amb_all dom 96.3 0.21 4.6E-06 47.9 16.0 136 160-318 45-189 (190)
37 PLN02634 probable pectinestera 96.3 1.5 3.3E-05 46.4 23.2 116 140-274 85-223 (359)
38 PLN02665 pectinesterase family 96.2 1.2 2.6E-05 47.3 22.3 127 129-274 82-228 (366)
39 PF04431 Pec_lyase_N: Pectate 96.2 0.0013 2.9E-08 51.7 0.1 24 27-50 20-43 (56)
40 COG5434 PGU1 Endopygalactoruna 96.1 0.075 1.6E-06 58.7 13.2 101 178-303 263-375 (542)
41 PLN02497 probable pectinestera 96.0 2.4 5.2E-05 44.5 23.0 138 129-292 46-200 (331)
42 COG3420 NosD Nitrous oxidase a 96.0 0.14 3.1E-06 53.5 13.6 132 154-307 45-197 (408)
43 PLN02671 pectinesterase 95.9 3 6.4E-05 44.3 23.3 135 129-292 73-236 (359)
44 PLN02176 putative pectinestera 95.9 0.38 8.3E-06 50.5 16.6 128 129-274 53-197 (340)
45 PF12708 Pectate_lyase_3: Pect 95.8 0.047 1E-06 51.2 8.9 120 161-297 98-221 (225)
46 PLN02432 putative pectinestera 95.8 0.36 7.8E-06 49.7 15.6 130 129-292 25-171 (293)
47 PLN02773 pectinesterase 94.9 1.1 2.4E-05 46.7 16.0 131 129-292 19-180 (317)
48 COG3866 PelB Pectate lyase [Ca 94.9 0.45 9.7E-06 49.3 12.7 117 179-318 147-276 (345)
49 PLN02201 probable pectinestera 94.7 0.97 2.1E-05 50.0 15.6 131 129-292 220-371 (520)
50 PF00544 Pec_lyase_C: Pectate 94.5 0.22 4.9E-06 48.0 9.3 115 178-315 77-200 (200)
51 PLN02416 probable pectinestera 94.5 0.77 1.7E-05 51.1 14.4 131 129-292 244-395 (541)
52 PLN02916 pectinesterase family 94.5 1.2 2.6E-05 49.1 15.6 122 129-274 201-346 (502)
53 PLN02170 probable pectinestera 94.5 1.1 2.3E-05 49.8 15.3 121 129-273 239-381 (529)
54 PF01095 Pectinesterase: Pecti 94.4 1.3 2.8E-05 45.6 15.0 123 129-274 14-156 (298)
55 PLN02745 Putative pectinestera 94.4 1 2.2E-05 50.6 15.3 131 129-292 299-450 (596)
56 PLN02506 putative pectinestera 94.3 1.7 3.8E-05 48.3 16.6 131 129-292 246-397 (537)
57 PF14592 Chondroitinas_B: Chon 94.0 0.25 5.4E-06 53.2 9.0 79 229-318 199-283 (425)
58 PLN02933 Probable pectinestera 93.8 1.4 3.1E-05 48.9 14.7 131 129-292 232-383 (530)
59 PLN03043 Probable pectinestera 93.8 1.6 3.5E-05 48.5 15.2 131 129-292 237-391 (538)
60 PLN02301 pectinesterase/pectin 93.8 1.5 3.2E-05 48.9 14.8 122 129-274 250-392 (548)
61 PLN02314 pectinesterase 93.8 1.4 3.1E-05 49.4 14.8 121 129-273 292-433 (586)
62 PLN02990 Probable pectinestera 93.7 1.8 3.8E-05 48.6 15.4 131 129-292 273-425 (572)
63 PLN02484 probable pectinestera 93.7 1.8 3.8E-05 48.7 15.4 131 129-292 286-438 (587)
64 PLN02995 Probable pectinestera 93.6 1.6 3.4E-05 48.6 14.7 122 129-274 237-381 (539)
65 PLN02713 Probable pectinestera 93.5 2 4.4E-05 48.1 15.4 131 129-292 264-418 (566)
66 PLN02488 probable pectinestera 93.3 2.4 5.3E-05 46.8 15.3 131 129-292 211-362 (509)
67 PLN02313 Pectinesterase/pectin 92.4 1.4 3E-05 49.5 12.2 98 129-246 289-407 (587)
68 PRK10531 acyl-CoA thioesterase 92.4 5.6 0.00012 43.1 16.2 87 183-292 204-300 (422)
69 TIGR03804 para_beta_helix para 92.4 0.23 5E-06 36.1 4.1 42 222-265 1-42 (44)
70 PLN02468 putative pectinestera 91.6 3.4 7.3E-05 46.3 14.0 131 129-292 272-423 (565)
71 PLN02708 Probable pectinestera 91.5 4.7 0.0001 45.1 14.9 113 129-264 255-390 (553)
72 PF08480 Disaggr_assoc: Disagg 90.9 4.7 0.0001 39.2 12.3 70 227-299 32-112 (198)
73 COG5434 PGU1 Endopygalactoruna 90.2 1.3 2.9E-05 49.2 9.1 144 137-292 236-395 (542)
74 PF07602 DUF1565: Protein of u 87.6 3.7 8E-05 41.4 9.5 86 159-268 96-191 (246)
75 PF08480 Disaggr_assoc: Disagg 82.9 6.9 0.00015 38.1 8.4 88 253-342 2-110 (198)
76 PF03211 Pectate_lyase: Pectat 79.4 10 0.00022 37.6 8.5 51 216-267 92-143 (215)
77 TIGR03804 para_beta_helix para 71.7 8.8 0.00019 27.7 4.5 41 179-241 2-42 (44)
78 PF12541 DUF3737: Protein of u 58.9 97 0.0021 31.9 10.5 71 227-317 154-224 (277)
79 PF12541 DUF3737: Protein of u 55.6 42 0.00091 34.5 7.2 16 181-196 15-30 (277)
80 PF01696 Adeno_E1B_55K: Adenov 49.9 3E+02 0.0066 29.8 12.9 97 179-293 139-238 (386)
81 PRK10123 wcaM putative colanic 49.4 29 0.00062 36.3 5.1 54 179-243 262-315 (464)
82 PLN02698 Probable pectinestera 25.1 4.5E+02 0.0097 29.4 9.7 75 178-274 264-339 (497)
83 smart00722 CASH Domain present 21.7 5E+02 0.011 22.0 8.4 69 179-263 40-112 (146)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-54 Score=430.65 Aligned_cols=273 Identities=29% Similarity=0.369 Sum_probs=222.5
Q ss_pred CCCcCCCCCeEEEEcCCCCCCCCCCCchhHHHHHhCCCCeEEEEccceEEeec------ceEEecCCcEEeccCceEEEe
Q 011814 101 QYAMGGKGGEYYIVTDSSDDDAVSPKPGTLRYAVIQPQPLWIVFPSNMLIKLS------QELIFNSYKTLDGRGANVHIT 174 (477)
Q Consensus 101 ~~ttGG~gG~vy~VT~~~D~~~~~p~pGsLR~Av~q~~P~~IvF~~~g~I~l~------~~L~V~SnkTI~G~Ga~i~I~ 174 (477)
.+||||.+|++++|.+.+| |...+...+|.++|.-+.|+|.+. .+|++.|||||.|.|++.+|.
T Consensus 46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~ 115 (345)
T COG3866 46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV 115 (345)
T ss_pred CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence 3799999999999999876 577888888885555556688875 567889999999999999999
Q ss_pred cceeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEe-eCCccEEEEeeeeec--------CCCCe
Q 011814 175 GGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISI-FGSKDLWIDHCSLSH--------CKDGL 245 (477)
Q Consensus 175 G~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I-~gs~nVWIDHcs~s~--------~~DGl 245 (477)
|++ |+|+.+.|||||||+|++.. ++++ ..|+|+| .+++|||||||+|+. +.||+
T Consensus 116 g~g-l~i~~a~NVIirNltf~~~~-~~d~---------------~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl 178 (345)
T COG3866 116 GGG-LKIRDAGNVIIRNLTFEGFY-QGDP---------------NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL 178 (345)
T ss_pred ece-EEEEeCCcEEEEeeEEEeec-cCCC---------------CCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence 998 99999999999999999864 3321 2599999 679999999999998 78999
Q ss_pred EEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCC-cEEEEEeeEECCCCcCcCcccccceEEEEcceEeCCc--ceE
Q 011814 246 IDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWE--MYA 322 (477)
Q Consensus 246 iDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g-~~VTihhN~F~~n~~qR~PrvR~G~vHvvNN~y~nw~--~Ya 322 (477)
+|+++++++||||||+|++|+|.+|+|.+|+...|.+ .+||+|||+| +|+.||+||+|||.+||+||||+... .||
T Consensus 179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a 257 (345)
T COG3866 179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVA 257 (345)
T ss_pred EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceE
Confidence 9999999999999999999999999999998655544 8999999999 79999999999999999999999655 466
Q ss_pred eecCCCceEEeeCcEEeCCCCCCccceeccccCCccCcCCCeecccCCeEEeceEEeecCCc------cccccCCCcccc
Q 011814 323 IGGSGNPTINSQGNRYTAPTNRNAKEVTKRVDTAESHWRDWNWRSEGDVMVNGAFFVASGAG------VEVKYERAFSVE 396 (477)
Q Consensus 323 ig~s~~~~I~segN~F~~~~~~~~k~vt~r~~~~~~~w~~w~w~s~Gd~~~nGa~f~~sg~~------~~~~y~~~~s~~ 396 (477)
++.+..++|++|+|||+....+..---+++. + + +|+. -+|++|..++.. .+..+...|+|+
T Consensus 258 ~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--~-G-----Y~~~-----d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Yt 324 (345)
T COG3866 258 ITIGTSAKIYVENNYFENGSEGLGFLDTKGT--S-G-----YANQ-----DSGSYLNSSKSMSVRAGGVTWNPSSYYSYT 324 (345)
T ss_pred EeeccceEEEEecceeccCCCCceeeecCCc--c-c-----eEEe-----ccCceecccCCcccccCCccCCCCCCcccc
Confidence 6666669999999999997655322112221 0 1 2221 345666555432 234566789999
Q ss_pred cCChhhH-HHHHhccCCCC
Q 011814 397 PKSAELI-EQLTWHSGVLG 414 (477)
Q Consensus 397 ~~~~~~v-~~lt~~AG~l~ 414 (477)
+.|++.| +.||++||+.+
T Consensus 325 vd~~~dVks~Vt~yAGaGk 343 (345)
T COG3866 325 VDPPEDVKSFVTNYAGAGK 343 (345)
T ss_pred cCChHHhhhhhhcccccee
Confidence 9999999 77999999754
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=9e-50 Score=381.06 Aligned_cols=191 Identities=42% Similarity=0.666 Sum_probs=159.9
Q ss_pred CCeEEEEccceEEeecceEEecCCcEEeccCceEEEecceeEEEe-eeccEEEEeeEEEeeeccCCceeccCCCcccccc
Q 011814 138 QPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGGCITLQ-YISNVIIHNIHIHHCVESGNANVRSSPTHYGYRT 216 (477)
Q Consensus 138 ~P~~IvF~~~g~I~l~~~L~V~SnkTI~G~Ga~i~I~G~g~i~i~-~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~ 216 (477)
+|++|. ++|+|+++.+|.|.|||||+|+|++++|.+.| +.+. +++|||||||+|+++. ++..|...+...
T Consensus 1 ~~~ii~--~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G-~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPLIIK--VSGTIDLKSPISVGSNKTIIGIGAGATIIGGG-LRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-EEEE--EHHCCHHHCEEEEESSEEEEEETTTTEEESSE-EEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcEEEE--EEeEEccCCeEEECCCcEEEEccCCeEEECce-EEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 355554 46799999999999999999999999999988 6665 9999999999999851 112222222233
Q ss_pred cCCCCcEEeeCCccEEEEeeeeecC--------CCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEE
Q 011814 217 KSDGDGISIFGSKDLWIDHCSLSHC--------KDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIA 288 (477)
Q Consensus 217 ~sdgDaI~I~gs~nVWIDHcs~s~~--------~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTih 288 (477)
..++|+|+|++++|||||||+|+|+ .||++|++.++++||||||+|++|+|++|+|++|+...|.+++||||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 5689999999999999999999999 99999999999999999999999999999999988877888999999
Q ss_pred eeEECCCCcCcCcccccceEEEEcceEeCCcceEeecCCCceEEeeCcEE
Q 011814 289 FNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRY 338 (477)
Q Consensus 289 hN~F~~n~~qR~PrvR~G~vHvvNN~y~nw~~Yaig~s~~~~I~segN~F 338 (477)
||+| .++.||+||+|+|++|+|||+|+++..|+++.++++++++|+|||
T Consensus 152 hN~f-~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 152 HNYF-ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp S-EE-EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred eEEE-CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 9999 589999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.1e-45 Score=350.53 Aligned_cols=171 Identities=58% Similarity=0.902 Sum_probs=157.5
Q ss_pred ceEEecCCcEEeccCceEEEecceeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEE
Q 011814 154 QELIFNSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWI 233 (477)
Q Consensus 154 ~~L~V~SnkTI~G~Ga~i~I~G~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWI 233 (477)
.+|.|.|||||+|+|++++|+|++ |+++.++|||||||+|++..+. . ..++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~g-l~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGG-LTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeE-EEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEeCCCeEEE
Confidence 467889999999999999999987 9998899999999999986431 1 13789999999999999
Q ss_pred EeeeeecC---------CCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCcccc
Q 011814 234 DHCSLSHC---------KDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCR 304 (477)
Q Consensus 234 DHcs~s~~---------~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR 304 (477)
|||+|+|. .||++|++.++++||||||+|++|+|.+|+|++|+...+..++||+|||+|+ ++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~-~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEc-CcccCCCccc
Confidence 99999998 8999999999999999999999999999999998876555689999999995 7999999999
Q ss_pred cceEEEEcceEeCCcceEeecCCCceEEeeCcEEeCC
Q 011814 305 RGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAP 341 (477)
Q Consensus 305 ~G~vHvvNN~y~nw~~Yaig~s~~~~I~segN~F~~~ 341 (477)
+|++|++||||++|..|+++.+.++++++|+|||++.
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999999999999999999999999875
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.99 E-value=7.5e-08 Score=98.55 Aligned_cols=238 Identities=15% Similarity=0.192 Sum_probs=137.5
Q ss_pred HHHHhCCCCe-EEEEccceEEeecceEEec-CCcEEeccCce-EEEec------ceeEEEeeeccEEEEeeEEEeeecc-
Q 011814 131 RYAVIQPQPL-WIVFPSNMLIKLSQELIFN-SYKTLDGRGAN-VHITG------GGCITLQYISNVIIHNIHIHHCVES- 200 (477)
Q Consensus 131 R~Av~q~~P~-~IvF~~~g~I~l~~~L~V~-SnkTI~G~Ga~-i~I~G------~g~i~i~~a~NVIIRnL~I~~~~~~- 200 (477)
.+|+.+.+|- +|++. .|+-++.+.|.|. +++||.|.|.. ..|.+ +..|.+ .++||.|++++|++....
T Consensus 2 Q~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~~G 79 (314)
T TIGR03805 2 QEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKGDG 79 (314)
T ss_pred HhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCCCe
Confidence 4566655554 44444 4566666778884 88999998764 34432 223544 688888888888764211
Q ss_pred ------CCceeccCCCccccc----ccCCCCcEEeeCCccEEEEeeeeecCCC-CeEEeeeCCCeEEEEcceecccceEE
Q 011814 201 ------GNANVRSSPTHYGYR----TKSDGDGISIFGSKDLWIDHCSLSHCKD-GLIDAVMGSTGITISNNYFSHHNEVM 269 (477)
Q Consensus 201 ------g~~~i~~sp~~~g~r----~~sdgDaI~I~gs~nVWIDHcs~s~~~D-GliDv~~gSt~VTISnn~f~~h~k~m 269 (477)
.+..|+... ..|. ....++||.++.++++-|.+|.++...| |++ ...|++++|++|.+++.....
T Consensus 80 I~v~~s~~i~I~n~~--i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIy--v~~s~~~~v~nN~~~~n~~GI 155 (314)
T TIGR03805 80 VKVKGSDGIIIRRLR--VEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIY--VGQSQNIVVRNNVAEENVAGI 155 (314)
T ss_pred EEEeCCCCEEEEeeE--EEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEE--ECCCCCeEEECCEEccCcceE
Confidence 111122111 0111 1145789999999999999999998876 665 567899999999998655544
Q ss_pred EecCCCCCCCCCCcEEEEEeeEECCCCcCc----Ccc--cccc-eEEEEcceEeCCc----------------ceEeecC
Q 011814 270 LLGHSDDYLPDSGMQVTIAFNHFGEKLVQR----MPR--CRRG-YIHVVNNDFTEWE----------------MYAIGGS 326 (477)
Q Consensus 270 LiG~sd~~~~D~g~~VTihhN~F~~n~~qR----~Pr--vR~G-~vHvvNN~y~nw~----------------~Yaig~s 326 (477)
.+-.+ .++.+.+|.+..|...= .|. .+++ .+.+.||.+.+-. ..++-..
T Consensus 156 ~i~~S--------~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~ 227 (314)
T TIGR03805 156 EIENS--------QNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVM 227 (314)
T ss_pred EEEec--------CCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEE
Confidence 44333 24677777774322110 011 1233 5778888877321 1122223
Q ss_pred CCceEEeeCcEEeCCCCCCccceeccccCC---ccCcCCCeecccCCeEEeceEEeecCCc
Q 011814 327 GNPTINSQGNRYTAPTNRNAKEVTKRVDTA---ESHWRDWNWRSEGDVMVNGAFFVASGAG 384 (477)
Q Consensus 327 ~~~~I~segN~F~~~~~~~~k~vt~r~~~~---~~~w~~w~w~s~Gd~~~nGa~f~~sg~~ 384 (477)
....+.+++|.|........- ++...... ...-++|.=.. .++.+-++.|...|..
T Consensus 228 ~~~~v~I~~N~i~~n~~~~i~-~~~~~~~~~~~~~~~~~~~~~~-~~v~i~~N~~~~~g~~ 286 (314)
T TIGR03805 228 ANRDVEIFGNVISNNDTANVL-ISSYHSTGLPDQPPDDGFDPYP-RNISIHDNTFSDGGTN 286 (314)
T ss_pred cccceEEECCEEeCCcceeEE-EEecccccCCCCCcCCCccCCC-cceEEEccEeecCCCC
Confidence 346788899999887654321 22111110 00002232222 6678888888877653
No 5
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.41 E-value=2.4e-05 Score=80.32 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=100.4
Q ss_pred EEe-cCCcEEeccCceEEEecceeEEEeeeccEEEEeeEEEeee--------------ccCCceeccCCCcccccccCCC
Q 011814 156 LIF-NSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCV--------------ESGNANVRSSPTHYGYRTKSDG 220 (477)
Q Consensus 156 L~V-~SnkTI~G~Ga~i~I~G~g~i~i~~a~NVIIRnL~I~~~~--------------~~g~~~i~~sp~~~g~r~~sdg 220 (477)
+.+ .+++||.|.+-. .-.+. .|.++.++|++||++++.... .+.+..|+.+.. + ...+
T Consensus 58 i~v~a~~VtI~~ltI~-~~~~~-GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i----~-g~~d 130 (314)
T TIGR03805 58 LLVTSDDVTLSDLAVE-NTKGD-GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYV----R-GASD 130 (314)
T ss_pred EEEEeCCeEEEeeEEE-cCCCC-eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEE----E-CCCc
Confidence 444 677888776321 00123 388889999999999996211 012222332211 1 1234
Q ss_pred CcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcC
Q 011814 221 DGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRM 300 (477)
Q Consensus 221 DaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~ 300 (477)
+||.+..++++.|.+|.+.....|+. .+.|.++.|.+|.+.+..-..++-..+....-...++++++|.|.. +...+
T Consensus 131 ~GIyv~~s~~~~v~nN~~~~n~~GI~--i~~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~-n~~~n 207 (314)
T TIGR03805 131 AGIYVGQSQNIVVRNNVAEENVAGIE--IENSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFD-NNTPN 207 (314)
T ss_pred ccEEECCCCCeEEECCEEccCcceEE--EEecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEEC-CCCCC
Confidence 58999999999999999999999886 4678999999999998665554422221111112489999999954 33221
Q ss_pred -----------ccccc------ceEEEEcceEeCCcceEe
Q 011814 301 -----------PRCRR------GYIHVVNNDFTEWEMYAI 323 (477)
Q Consensus 301 -----------PrvR~------G~vHvvNN~y~nw~~Yai 323 (477)
|.-+. -.+.++||.+++-...++
T Consensus 208 ~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i 247 (314)
T TIGR03805 208 FAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANV 247 (314)
T ss_pred CcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeE
Confidence 11110 157999999997655554
No 6
>PLN02218 polygalacturonase ADPG
Probab=98.28 E-value=2.5e-05 Score=83.52 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=81.9
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITIS 258 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTIS 258 (477)
+.+..++||+|+||+|.. |. .....|||.+.+++||.|.+|.++.. |..|.++.++++|+|+
T Consensus 218 i~~~~~~nV~i~~v~I~a--~~---------------~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I~ 279 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTA--PA---------------DSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQIN 279 (431)
T ss_pred EEEEceeeEEEEEEEEeC--CC---------------CCCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEEE
Confidence 445567777777777763 10 01256999999999999999999988 5566889999999999
Q ss_pred cceecccceEEEecCCCCCCCCCC-cEEEEEeeEECCCCcCcCcccc---cceEEEEcceEeCCcc
Q 011814 259 NNYFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCR---RGYIHVVNNDFTEWEM 320 (477)
Q Consensus 259 nn~f~~h~k~mLiG~sd~~~~D~g-~~VTihhN~F~~n~~qR~PrvR---~G~vHvvNN~y~nw~~ 320 (477)
+|.+.. ....-+|+--.+....+ .+|++.++.| .+ ..+.-|++ .|.-.+-|=.|+|..|
T Consensus 280 n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~-t~nGvRIKT~~Gg~G~v~nI~f~ni~m 342 (431)
T PLN02218 280 DITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SG-TDNGVRIKTYQGGSGTASNIIFQNIQM 342 (431)
T ss_pred eEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ec-CCcceEEeecCCCCeEEEEEEEEeEEE
Confidence 999963 23456887543322222 6899999999 43 45666654 2223344444444443
No 7
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.23 E-value=3.6e-05 Score=82.78 Aligned_cols=150 Identities=16% Similarity=0.265 Sum_probs=91.7
Q ss_pred eEEEEccceEEeecceEEecCCcEEeccCceEEE---ecceeEEEeeeccEEEEeeEEEeeec-------cCCceec---
Q 011814 140 LWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHI---TGGGCITLQYISNVIIHNIHIHHCVE-------SGNANVR--- 206 (477)
Q Consensus 140 ~~IvF~~~g~I~l~~~L~V~SnkTI~G~Ga~i~I---~G~g~i~i~~a~NVIIRnL~I~~~~~-------~g~~~i~--- 206 (477)
.||.|..- +.|.|.-.=||+|+|..--- ...-.|++.+++|+.|++|++++... ..+..++
T Consensus 105 ~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~ 178 (456)
T PLN03003 105 QWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLR 178 (456)
T ss_pred ceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEE
Confidence 47777531 12344333467777643100 00113566667777777777665321 0000110
Q ss_pred -cCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCC-CCCcE
Q 011814 207 -SSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLP-DSGMQ 284 (477)
Q Consensus 207 -~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~-D~g~~ 284 (477)
.+|. .....|||.+.+++||+|.+|.++...| .|.++.++++|+|+++.+... ...-+|+--++.. +.-.+
T Consensus 179 I~ap~-----~spNTDGIDi~~S~nV~I~n~~I~tGDD-CIaiksgs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~N 251 (456)
T PLN03003 179 INAPE-----SSPNTDGIDVGASSNVVIQDCIIATGDD-CIAINSGTSNIHISGIDCGPG-HGISIGSLGKDGETATVEN 251 (456)
T ss_pred EeCCC-----CCCCCCcEeecCcceEEEEecEEecCCC-eEEeCCCCccEEEEeeEEECC-CCeEEeeccCCCCcceEEE
Confidence 0110 1236799999999999999999998855 557889999999999998642 3456787644332 22278
Q ss_pred EEEEeeEECCCCcCcCcccc
Q 011814 285 VTIAFNHFGEKLVQRMPRCR 304 (477)
Q Consensus 285 VTihhN~F~~n~~qR~PrvR 304 (477)
|++.++.| .+ ..+.-|++
T Consensus 252 V~v~n~~~-~~-T~nGvRIK 269 (456)
T PLN03003 252 VCVQNCNF-RG-TMNGARIK 269 (456)
T ss_pred EEEEeeEE-EC-CCcEEEEE
Confidence 99999999 44 45666664
No 8
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.19 E-value=3.3e-05 Score=82.50 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=29.3
Q ss_pred CCCcEEeeCCccEEEEeeeeecCC-CCeEEeeeCCCeEEEEcceecccce
Q 011814 219 DGDGISIFGSKDLWIDHCSLSHCK-DGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 219 dgDaI~I~gs~nVWIDHcs~s~~~-DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
-|+||++|.+.+++|..|.+++|+ ||.+ ...++++.|..|.|++-.+
T Consensus 238 ~GNGI~~~~a~~v~V~gN~I~~~r~dgI~--~nsss~~~i~~N~~~~~R~ 285 (455)
T TIGR03808 238 YGNAINAFRAGNVIVRGNRIRNCDYSAVR--GNSASNIQITGNSVSDVRE 285 (455)
T ss_pred ccccEEEEccCCeEEECCEEeccccceEE--EEcccCcEEECcEeeeeee
Confidence 456666666666666666666666 6665 4556666666666665433
No 9
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.18 E-value=1.7e-05 Score=69.83 Aligned_cols=132 Identities=27% Similarity=0.343 Sum_probs=85.5
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITIS 258 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTIS 258 (477)
|.+....++.|++.+|+++ .++||.+.++..+.|+.|+|.+...|+. .....+++|+
T Consensus 3 i~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi~--~~~~~~~~i~ 59 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGIY--VSGGSNVTIS 59 (158)
T ss_dssp EEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSEE--EECCES-EEE
T ss_pred EEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEEE--EecCCCeEEE
Confidence 7788889999999999963 4578999999999999999999767774 4566899999
Q ss_pred cceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCcccc--cceEEEEcceEeCCcceEeecCC--CceEEee
Q 011814 259 NNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCR--RGYIHVVNNDFTEWEMYAIGGSG--NPTINSQ 334 (477)
Q Consensus 259 nn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR--~G~vHvvNN~y~nw~~Yaig~s~--~~~I~se 334 (477)
+|.|.+......+-.. -.+++.+|.|. ++..-.=.++ ...+.+.||.+.+-..+++.... .+.+.++
T Consensus 60 ~~~~~~~~~~i~~~~~--------~~~~i~~~~i~-~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~ 130 (158)
T PF13229_consen 60 NNTISDNGSGIYVSGS--------SNITIENNRIE-NNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIE 130 (158)
T ss_dssp S-EEES-SEEEECCS---------CS-EEES-EEE-CSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEE
T ss_pred CeEEEEccceEEEEec--------CCceecCcEEE-cCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEE
Confidence 9999987733333222 25899999994 4443344443 23688999999976655544333 4588889
Q ss_pred CcEEeCCC
Q 011814 335 GNRYTAPT 342 (477)
Q Consensus 335 gN~F~~~~ 342 (477)
+|.|....
T Consensus 131 ~n~i~~~~ 138 (158)
T PF13229_consen 131 NNTISNNG 138 (158)
T ss_dssp CEEEECES
T ss_pred EEEEEeCc
Confidence 99998765
No 10
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.17 E-value=4.4e-05 Score=81.20 Aligned_cols=169 Identities=18% Similarity=0.232 Sum_probs=74.1
Q ss_pred chhHHHHHhCCCCeEEEEccceEEeecceEEe------cCCcEEeccCc-eEEEecceeEEEeeeccEEEEeeEEEeeec
Q 011814 127 PGTLRYAVIQPQPLWIVFPSNMLIKLSQELIF------NSYKTLDGRGA-NVHITGGGCITLQYISNVIIHNIHIHHCVE 199 (477)
Q Consensus 127 pGsLR~Av~q~~P~~IvF~~~g~I~l~~~L~V------~SnkTI~G~Ga-~i~I~G~g~i~i~~a~NVIIRnL~I~~~~~ 199 (477)
+.+|..|+.+-.|=-.|+=.+|+-+ ..+|.+ ...+||..+.+ .+.|.|...|+| ..+.++|.+|.|++...
T Consensus 4 ~~~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i-~G~yl~v~GL~F~ng~~ 81 (425)
T PF14592_consen 4 VAELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRI-SGSYLVVSGLKFKNGYT 81 (425)
T ss_dssp HHHHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred HHHHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEE-EeeeEEEeCeEEecCCC
Confidence 3468888865443222222234544 234544 24688888743 488888888888 57999999999998754
Q ss_pred cCCceeccC--CC-----cc--------cccc-cCCCCcEEe----eCCccEEEEeeeeecC-CCC-eEEee-------e
Q 011814 200 SGNANVRSS--PT-----HY--------GYRT-KSDGDGISI----FGSKDLWIDHCSLSHC-KDG-LIDAV-------M 250 (477)
Q Consensus 200 ~g~~~i~~s--p~-----~~--------g~r~-~sdgDaI~I----~gs~nVWIDHcs~s~~-~DG-liDv~-------~ 250 (477)
.....|.-. .. |- .+.. ..+.+...+ -.++|--||||+|..- ..| .+-+. .
T Consensus 82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~ 161 (425)
T PF14592_consen 82 PTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQS 161 (425)
T ss_dssp -TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS--
T ss_pred CCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccc
Confidence 322222100 00 00 0100 111222334 2468888999999873 222 22222 1
Q ss_pred CCCeEEEEcceecc-------cceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcC
Q 011814 251 GSTGITISNNYFSH-------HNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRM 300 (477)
Q Consensus 251 gSt~VTISnn~f~~-------h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~ 300 (477)
-..+-+|.+|+|.+ ...++-+|.|.....+ -+.++.+|+| ++|..-.
T Consensus 162 ~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE~ 215 (425)
T PF14592_consen 162 IANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGEV 215 (425)
T ss_dssp -----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSS
T ss_pred cccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCce
Confidence 24577999999994 3346777877543222 4788899999 5676553
No 11
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.14 E-value=6.4e-05 Score=79.84 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=77.3
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITIS 258 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTIS 258 (477)
+.+..++||.|++|+|..-. .....|||.++.++||+|.+|.+....| .|.++.++++|+|+
T Consensus 181 i~~~~~~~v~i~~v~I~~~~-----------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~ 242 (404)
T PLN02188 181 IALVECRNFKGSGLKISAPS-----------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTIT 242 (404)
T ss_pred EEEEccccEEEEEEEEeCCC-----------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEEE
Confidence 56668899999999997421 0125699999999999999999999866 55788899999999
Q ss_pred cceecccceEEEecCCCCCCCCCC-cEEEEEeeEECCCCcCcCcccc
Q 011814 259 NNYFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCR 304 (477)
Q Consensus 259 nn~f~~h~k~mLiG~sd~~~~D~g-~~VTihhN~F~~n~~qR~PrvR 304 (477)
|+.+... ..+-+|+--.+....+ .+|++.++.|. + .++.-|++
T Consensus 243 n~~c~~g-hGisiGSlG~~~~~~~V~nV~v~n~~~~-~-t~~GiriK 286 (404)
T PLN02188 243 RIRCGPG-HGISVGSLGRYPNEGDVTGLVVRDCTFT-G-TTNGIRIK 286 (404)
T ss_pred EEEEcCC-CcEEeCCCCCCCcCCcEEEEEEEeeEEE-C-CCcEEEEE
Confidence 9998643 3466787433222222 68999999994 3 45555553
No 12
>PLN02793 Probable polygalacturonase
Probab=98.13 E-value=6.5e-05 Score=80.68 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=74.9
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITIS 258 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTIS 258 (477)
+.+..++||.|+||+|.... .....|||.+..++||+|.+|.+... |..|.++.++++|+|+
T Consensus 203 i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~I~ 264 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIKIR 264 (443)
T ss_pred EEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEEEE
Confidence 45556778888888876421 11356999999999999999999977 5555778899999999
Q ss_pred cceecccceEEEecCCCCCCCCCC-cEEEEEeeEECCCCcCcCcccc
Q 011814 259 NNYFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRCR 304 (477)
Q Consensus 259 nn~f~~h~k~mLiG~sd~~~~D~g-~~VTihhN~F~~n~~qR~PrvR 304 (477)
||.+... ...-+|+--.+....+ .+|++.++.|. + ..+.-|++
T Consensus 265 n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~~-~-t~~GirIK 308 (443)
T PLN02793 265 NIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFLS-N-TDNGVRIK 308 (443)
T ss_pred EeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEEe-C-CCceEEEE
Confidence 9998642 2356787533222223 68999999994 3 45666654
No 13
>PLN02155 polygalacturonase
Probab=97.99 E-value=0.00012 Score=77.49 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=75.6
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITIS 258 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTIS 258 (477)
+.+..++||.|+||+|..- . .....|||.+..++||+|.+|.+....| .|.++.++++|+|+
T Consensus 171 i~~~~~~nv~i~~v~I~~p--~---------------~~~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I~ 232 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAP--G---------------NSPNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLIT 232 (394)
T ss_pred EEEECeeeEEEEEEEEECC--C---------------CCCCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEEE
Confidence 5556778888888888751 0 0125699999999999999999999866 55788899999999
Q ss_pred cceecccceEEEecCCCCCCCCCC-cEEEEEeeEECCCCcCcCccc
Q 011814 259 NNYFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRC 303 (477)
Q Consensus 259 nn~f~~h~k~mLiG~sd~~~~D~g-~~VTihhN~F~~n~~qR~Prv 303 (477)
+|.+.. ...+-+|+--.+....+ .+|++.++.|. + ..+.-|+
T Consensus 233 n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~-~-t~~GirI 275 (394)
T PLN02155 233 KLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFT-G-SQNGVRI 275 (394)
T ss_pred EEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEe-C-CCcEEEE
Confidence 999875 23466888533221222 68999999994 3 3455555
No 14
>PLN02218 polygalacturonase ADPG
Probab=97.99 E-value=0.0003 Score=75.43 Aligned_cols=137 Identities=14% Similarity=0.158 Sum_probs=92.4
Q ss_pred eEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeec-----CCCCeEEeeeCC
Q 011814 178 CITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSH-----CKDGLIDAVMGS 252 (477)
Q Consensus 178 ~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~-----~~DGliDv~~gS 252 (477)
.|++.+++|+.|++|+|++... | .|++..++||.|++.++.. -.||+ | ...+
T Consensus 194 ~i~f~~~~nv~I~gitl~nSp~--------------w-------~i~~~~~~nV~i~~v~I~a~~~spNTDGI-d-i~ss 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNAQQ--------------I-------QISIEKCSNVQVSNVVVTAPADSPNTDGI-H-ITNT 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcCCC--------------E-------EEEEEceeeEEEEEEEEeCCCCCCCCCcE-e-eccc
Confidence 4778899999999999997411 2 5899999999999999875 56887 7 4678
Q ss_pred CeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCc------CcCccc-ccceEEEEcceEeCCcceEe--
Q 011814 253 TGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLV------QRMPRC-RRGYIHVVNNDFTEWEMYAI-- 323 (477)
Q Consensus 253 t~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~------qR~Prv-R~G~vHvvNN~y~nw~~Yai-- 323 (477)
++|+|++|.|...+.+.-+.+.. .+|++.++.++.+.. .+.+.- -.-.++|-|+.+.+- .+++
T Consensus 251 ~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t-~nGvRI 322 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGT-DNGVRI 322 (431)
T ss_pred ceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecC-CcceEE
Confidence 99999999999988877776542 368888888743211 011100 011467777777653 2222
Q ss_pred -----ecCCCceEEeeCcEEeCCCCCC
Q 011814 324 -----GGSGNPTINSQGNRYTAPTNRN 345 (477)
Q Consensus 324 -----g~s~~~~I~segN~F~~~~~~~ 345 (477)
+++.-..|.+++.+.+....|.
T Consensus 323 KT~~Gg~G~v~nI~f~ni~m~~V~~pI 349 (431)
T PLN02218 323 KTYQGGSGTASNIIFQNIQMENVKNPI 349 (431)
T ss_pred eecCCCCeEEEEEEEEeEEEEcccccE
Confidence 1122334666777777665543
No 15
>PLN03010 polygalacturonase
Probab=97.92 E-value=0.00057 Score=72.86 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=72.6
Q ss_pred CCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCC-CCCcEEEEEeeEECCCC
Q 011814 218 SDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLP-DSGMQVTIAFNHFGEKL 296 (477)
Q Consensus 218 sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~-D~g~~VTihhN~F~~n~ 296 (477)
...|||.+..++||+|.+|.+... |..|.++.++++++|.++.... ....-+|+--.... +.-.+|++.++.|. +
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~-~- 280 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFN-Q- 280 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEe-C-
Confidence 357999999999999999999988 5566788888888888777653 22345677533321 22268999999994 3
Q ss_pred cCcCcccc---cceEEEEcceEeCCcceEeecCCCceEEeeCcEEe
Q 011814 297 VQRMPRCR---RGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYT 339 (477)
Q Consensus 297 ~qR~PrvR---~G~vHvvNN~y~nw~~Yaig~s~~~~I~segN~F~ 339 (477)
.++.-|++ .+.-.+-|=.|+|..+... ..| |.+..+|..
T Consensus 281 t~~GirIKt~~G~~G~v~nItf~nI~m~~v---~~p-I~I~q~Y~~ 322 (409)
T PLN03010 281 TTNGARIKTWQGGQGYARNISFENITLINT---KNP-IIIDQQYID 322 (409)
T ss_pred CCcceEEEEecCCCEEEEEeEEEeEEEecC---Ccc-EEEEeeccC
Confidence 44555554 2233444545555543332 223 555555543
No 16
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.89 E-value=0.00069 Score=72.61 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=77.1
Q ss_pred hhHHHHHhCCC--CeEEEEccceEEeecceEEecCCcEEeccCceE--EEecce-eEEEeeeccEEEEeeEEEeeeccCC
Q 011814 128 GTLRYAVIQPQ--PLWIVFPSNMLIKLSQELIFNSYKTLDGRGANV--HITGGG-CITLQYISNVIIHNIHIHHCVESGN 202 (477)
Q Consensus 128 GsLR~Av~q~~--P~~IvF~~~g~I~l~~~L~V~SnkTI~G~Ga~i--~I~G~g-~i~i~~a~NVIIRnL~I~~~~~~g~ 202 (477)
..|+.|+.+-. .-.|++..+ +- +...|.+.+++||.|..... .|.|.+ .+.-..++||.|++++|++. |.
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G-~Y-~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs---G~ 129 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPG-VY-RTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG---GI 129 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCC-ce-ecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC---CC
Confidence 35777775422 234555543 21 23667888999999985532 355543 34244899999999999862 21
Q ss_pred ceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecC-CCCeEEeeeCCCeEEEEcceecc
Q 011814 203 ANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHC-KDGLIDAVMGSTGITISNNYFSH 264 (477)
Q Consensus 203 ~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~-~DGliDv~~gSt~VTISnn~f~~ 264 (477)
......-+|.+.+++++-|.+|+|... ..|+. .+++. ..|++|.+..
T Consensus 130 ------------dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~--L~~~~-~~I~~N~I~g 177 (455)
T TIGR03808 130 ------------PLPQRRGLIHCQGGRDVRITDCEITGSGGNGIW--LETVS-GDISGNTITQ 177 (455)
T ss_pred ------------cccCCCCEEEEccCCceEEEeeEEEcCCcceEE--EEcCc-ceEecceEec
Confidence 111233489999999999999999998 48885 46666 6666666554
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.83 E-value=0.00014 Score=74.72 Aligned_cols=132 Identities=25% Similarity=0.287 Sum_probs=88.2
Q ss_pred CCCCeEEEEccceEEeecceEEecCCcEEeccCceEEEecce--eEEEeeeccEEEEeeEEEeeeccCCceeccCCCccc
Q 011814 136 QPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGG--CITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYG 213 (477)
Q Consensus 136 q~~P~~IvF~~~g~I~l~~~L~V~SnkTI~G~Ga~i~I~G~g--~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g 213 (477)
...|+.|.|... .+++|.|. +|.... .+.+..++||.|+||+|+....
T Consensus 89 ~~rp~~i~~~~~------------~~~~i~~i----~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~-------------- 138 (326)
T PF00295_consen 89 QRRPRLIRFNNC------------KNVTIEGI----TIRNSPFWHIHINDCDNVTISNITINNPAN-------------- 138 (326)
T ss_dssp SSSSESEEEEEE------------EEEEEESE----EEES-SSESEEEESEEEEEEESEEEEEGGG--------------
T ss_pred ccccceeeeeee------------cceEEEee----EecCCCeeEEEEEccCCeEEcceEEEecCC--------------
Confidence 356888888642 13444442 233222 4677789999999999996321
Q ss_pred ccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCC-cEEEEEeeEE
Q 011814 214 YRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHF 292 (477)
Q Consensus 214 ~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g-~~VTihhN~F 292 (477)
....|||.+.+++||.|++|.+....| .+.++.++.+|+|+||++... ..+-+|+.-....... .+|+|.++.|
T Consensus 139 ---~~NtDGid~~~s~nv~I~n~~i~~gDD-~Iaiks~~~ni~v~n~~~~~g-hGisiGS~~~~~~~~~i~nV~~~n~~i 213 (326)
T PF00295_consen 139 ---SPNTDGIDIDSSKNVTIENCFIDNGDD-CIAIKSGSGNILVENCTCSGG-HGISIGSEGSGGSQNDIRNVTFENCTI 213 (326)
T ss_dssp ---CTS--SEEEESEEEEEEESEEEESSSE-SEEESSEECEEEEESEEEESS-SEEEEEEESSSSE--EEEEEEEEEEEE
T ss_pred ---CCCcceEEEEeeeEEEEEEeecccccC-cccccccccceEEEeEEEecc-ccceeeeccCCccccEEEeEEEEEEEe
Confidence 135799999999999999999988855 556777788999999999752 3356776433211111 5899999999
Q ss_pred CCCCcCcCcccc
Q 011814 293 GEKLVQRMPRCR 304 (477)
Q Consensus 293 ~~n~~qR~PrvR 304 (477)
.+ ..|.-|++
T Consensus 214 -~~-t~~gi~iK 223 (326)
T PF00295_consen 214 -IN-TDNGIRIK 223 (326)
T ss_dssp -ES-ESEEEEEE
T ss_pred -ec-cceEEEEE
Confidence 44 45665554
No 18
>PLN02480 Probable pectinesterase
Probab=97.73 E-value=0.01 Score=62.03 Aligned_cols=137 Identities=15% Similarity=0.245 Sum_probs=88.4
Q ss_pred hhHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCce-EEEec---------ceeEEEeeeccEEEE
Q 011814 128 GTLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGAN-VHITG---------GGCITLQYISNVIIH 190 (477)
Q Consensus 128 GsLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~-i~I~G---------~g~i~i~~a~NVIIR 190 (477)
-|+.+||.+ +..+++|+-..|+- ++.|.| .+|+||.|.+.. ..|.+ .+.++| .+++++++
T Consensus 61 ~TIQ~AIdaap~~~~~~~~I~Ik~GvY--~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~ 137 (343)
T PLN02480 61 TSVQSAIDAVPVGNSEWIIVHLRKGVY--REKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAF 137 (343)
T ss_pred ccHHHHHhhCccCCCceEEEEEcCcEE--EEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEE
Confidence 378888743 23455555555553 356677 578999998754 34432 234666 68999999
Q ss_pred eeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEE
Q 011814 191 NIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVM 269 (477)
Q Consensus 191 nL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~m 269 (477)
||+|++..+.+.. ...++-||-+. .++++.+.+|.|.-..|=|++ ....--..+|+|..+-. +
T Consensus 138 nLTf~Nta~~g~~------------~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~---~~gR~yf~~C~IeG~VD-F 201 (343)
T PLN02480 138 GISIRNDAPTGMA------------FTSENQSVAAFVGADKVAFYHCAFYSTHNTLFD---YKGRHYYHSCYIQGSID-F 201 (343)
T ss_pred eeEEEecCCCCCC------------CCCCCceEEEEecCCcEEEEeeEEecccceeEe---CCCCEEEEeCEEEeeee-E
Confidence 9999986432110 01234466664 689999999999999999985 23456677888875432 3
Q ss_pred EecCCCCCCCCCCcEEEEEeeEE
Q 011814 270 LLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 270 LiG~sd~~~~D~g~~VTihhN~F 292 (477)
++|.. +.-|.+|.+
T Consensus 202 IFG~g---------~a~fe~C~i 215 (343)
T PLN02480 202 IFGRG---------RSIFHNCEI 215 (343)
T ss_pred Eccce---------eEEEEccEE
Confidence 56654 355555555
No 19
>PLN03010 polygalacturonase
Probab=97.71 E-value=0.0022 Score=68.48 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=97.8
Q ss_pred CCcEEeccCceEEEecce-----eEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEE
Q 011814 160 SYKTLDGRGANVHITGGG-----CITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWID 234 (477)
Q Consensus 160 SnkTI~G~Ga~i~I~G~g-----~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWID 234 (477)
.|++|.|.| +|.|.| .|++.+++||.|++|++++.. .| .|++.+++||.|+
T Consensus 139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp--------------~~-------~i~i~~~~nv~i~ 194 (409)
T PLN03010 139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSP--------------KN-------HISIKTCNYVAIS 194 (409)
T ss_pred cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCC--------------ce-------EEEEeccccEEEE
Confidence 455555543 344433 478889999999999999741 12 4888999999999
Q ss_pred eeeeec-----CCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCC----cCcCcc-cc
Q 011814 235 HCSLSH-----CKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKL----VQRMPR-CR 304 (477)
Q Consensus 235 Hcs~s~-----~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~----~qR~Pr-vR 304 (477)
+..+.. -.||. | ...+++|+|++|.+...+.+.-+.+... ...|+...+..+|+. ...... .-
T Consensus 195 ~i~I~a~~~s~NTDGi-D-i~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~ 267 (409)
T PLN03010 195 KINILAPETSPNTDGI-D-ISYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAK 267 (409)
T ss_pred EEEEeCCCCCCCCCce-e-eeccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCe
Confidence 999864 46887 7 4679999999999999998877766421 245555555443320 001000 00
Q ss_pred cceEEEEcceEeCCcceEee-----c--CCCceEEeeCcEEeCCCCCC
Q 011814 305 RGYIHVVNNDFTEWEMYAIG-----G--SGNPTINSQGNRYTAPTNRN 345 (477)
Q Consensus 305 ~G~vHvvNN~y~nw~~Yaig-----~--s~~~~I~segN~F~~~~~~~ 345 (477)
.-.+++.|+.+++- .+++. + +.-..|.+++-+++....|.
T Consensus 268 V~nV~v~n~~i~~t-~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI 314 (409)
T PLN03010 268 VSDVHVTHCTFNQT-TNGARIKTWQGGQGYARNISFENITLINTKNPI 314 (409)
T ss_pred eEEEEEEeeEEeCC-CcceEEEEecCCCEEEEEeEEEeEEEecCCccE
Confidence 12577888887753 12221 1 11234666777777666553
No 20
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.71 E-value=0.00068 Score=59.62 Aligned_cols=128 Identities=23% Similarity=0.261 Sum_probs=72.9
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITIS 258 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTIS 258 (477)
|.+...+++.|+|.+|++ .+.+|.+.+..++.|+.|.++.+..|+ . ...+..++|+
T Consensus 26 i~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~~~i-~-~~~~~~~~i~ 81 (158)
T PF13229_consen 26 IHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNGSGI-Y-VSGSSNITIE 81 (158)
T ss_dssp EEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-SEEE-E-CCS-CS-EEE
T ss_pred EEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEccceE-E-EEecCCceec
Confidence 677667777788888774 246788888888899999998887444 3 3478888999
Q ss_pred cceecccce-EEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCccccc-c--eEEEEcceEeCCcceEeecCCCce-EEe
Q 011814 259 NNYFSHHNE-VMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRR-G--YIHVVNNDFTEWEMYAIGGSGNPT-INS 333 (477)
Q Consensus 259 nn~f~~h~k-~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~-G--~vHvvNN~y~nw~~Yaig~s~~~~-I~s 333 (477)
+|.|.+... .+.+.. ....+++.+|.|. ++.+..=.+.. . .+-+.+|.+++-..+++....... +.+
T Consensus 82 ~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~-~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v 153 (158)
T PF13229_consen 82 NNRIENNGDYGIYISN-------SSSNVTIENNTIH-NNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTV 153 (158)
T ss_dssp S-EEECSSS-SCE-TC-------EECS-EEES-EEE-CCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EE
T ss_pred CcEEEcCCCccEEEec-------cCCCEEEEeEEEE-eCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEE
Confidence 998887655 233321 1135888888884 33322222222 2 566788888887778875544444 777
Q ss_pred eCcEE
Q 011814 334 QGNRY 338 (477)
Q Consensus 334 egN~F 338 (477)
.+|.|
T Consensus 154 ~~n~~ 158 (158)
T PF13229_consen 154 TNNTF 158 (158)
T ss_dssp ES-E-
T ss_pred ECCCC
Confidence 88876
No 21
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.65 E-value=0.0025 Score=61.74 Aligned_cols=126 Identities=25% Similarity=0.221 Sum_probs=58.8
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITIS 258 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTIS 258 (477)
+.+..++++.|++.+|+++ ..||.+.+++++-|..|.++.+.+|+. ...+.+.+|+
T Consensus 38 i~~~~s~~~~I~~n~i~~~----------------------~~GI~~~~s~~~~i~~n~i~~n~~Gi~--l~~s~~~~I~ 93 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN----------------------RYGIHLMGSSNNTIENNTISNNGYGIY--LMGSSNNTIS 93 (236)
T ss_pred EEEEEcCCeEEEeeEEECC----------------------CeEEEEEccCCCEEEeEEEEccCCCEE--EEcCCCcEEE
Confidence 4556677777777777653 234555555555555555555555543 2333333555
Q ss_pred cceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCccccc-ceEEEEcceEeCCcceEee-cCCCceEEeeCc
Q 011814 259 NNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRR-GYIHVVNNDFTEWEMYAIG-GSGNPTINSQGN 336 (477)
Q Consensus 259 nn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~-G~vHvvNN~y~nw~~Yaig-~s~~~~I~segN 336 (477)
+|.|.+.....++-.++ ..++.+|.|. .....-.+.. ....+.+|.+.+-..|++. ......-.+.+|
T Consensus 94 ~N~i~~n~~GI~l~~s~--------~~~I~~N~i~--~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N 163 (236)
T PF05048_consen 94 NNTISNNGYGIYLYGSS--------NNTISNNTIS--NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNN 163 (236)
T ss_pred CCEecCCCceEEEeeCC--------ceEEECcEEe--CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECC
Confidence 55555443332222221 2445555552 1222222222 2344555555544444444 223333444555
Q ss_pred EE
Q 011814 337 RY 338 (477)
Q Consensus 337 ~F 338 (477)
+|
T Consensus 164 ~f 165 (236)
T PF05048_consen 164 NF 165 (236)
T ss_pred Cc
Confidence 55
No 22
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.60 E-value=0.0012 Score=64.00 Aligned_cols=130 Identities=27% Similarity=0.213 Sum_probs=99.7
Q ss_pred ceeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeE
Q 011814 176 GGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGI 255 (477)
Q Consensus 176 ~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~V 255 (477)
.| |.+..++++.|++.++.. ..|+|.+..++++-|..|+++.+..|+. ...+..+
T Consensus 14 ~G-i~l~~~~~~~i~~n~i~~----------------------~~~gi~~~~s~~~~I~~n~i~~~~~GI~--~~~s~~~ 68 (236)
T PF05048_consen 14 NG-IYLWNSSNNSIENNTISN----------------------SRDGIYVENSDNNTISNNTISNNRYGIH--LMGSSNN 68 (236)
T ss_pred Cc-EEEEeCCCCEEEcCEEEe----------------------CCCEEEEEEcCCeEEEeeEEECCCeEEE--EEccCCC
Confidence 44 888888999998888875 3588999999999999999999998886 5778899
Q ss_pred EEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCcccccc-eEEEEcceEeCCcceEeecCCCceEEee
Q 011814 256 TISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRG-YIHVVNNDFTEWEMYAIGGSGNPTINSQ 334 (477)
Q Consensus 256 TISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~G-~vHvvNN~y~nw~~Yaig~s~~~~I~se 334 (477)
+|++|.|.+.....++..+. +.++..|.|.. +.. .-.+... ...+.+|.+. -..++|-........++
T Consensus 69 ~i~~n~i~~n~~Gi~l~~s~--------~~~I~~N~i~~-n~~-GI~l~~s~~~~I~~N~i~-~~~~GI~l~~s~~n~I~ 137 (236)
T PF05048_consen 69 TIENNTISNNGYGIYLMGSS--------NNTISNNTISN-NGY-GIYLYGSSNNTISNNTIS-NNGYGIYLSSSSNNTIT 137 (236)
T ss_pred EEEeEEEEccCCCEEEEcCC--------CcEEECCEecC-CCc-eEEEeeCCceEEECcEEe-CCCEEEEEEeCCCCEEE
Confidence 99999999876554444432 36999999953 333 4444333 4679999998 44677765555677788
Q ss_pred CcEEeCC
Q 011814 335 GNRYTAP 341 (477)
Q Consensus 335 gN~F~~~ 341 (477)
+|.|...
T Consensus 138 ~N~i~~n 144 (236)
T PF05048_consen 138 GNTISNN 144 (236)
T ss_pred CeEEeCC
Confidence 9999887
No 23
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.55 E-value=0.0012 Score=71.23 Aligned_cols=136 Identities=16% Similarity=0.204 Sum_probs=82.7
Q ss_pred cCCcEEeccCceEEEecceeEEEeeeccEEEEeeEEEeeecc--CCceeccCCCcccccccCCCCcEEeeCCccEEEEee
Q 011814 159 NSYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVES--GNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHC 236 (477)
Q Consensus 159 ~SnkTI~G~Ga~i~I~G~g~i~i~~a~NVIIRnL~I~~~~~~--g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHc 236 (477)
-.+++|.|.| +|.|.|...- ...+--=+-|+|.+|... .+-.++++|. =.|++.+++||.|++.
T Consensus 112 ~~~i~I~G~G---tIDGqG~~wW-~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----------w~i~i~~c~nV~i~~l 177 (456)
T PLN03003 112 IEGLVIEGDG---EINGQGSSWW-EHKGSRPTALKFRSCNNLRLSGLTHLDSPM----------AHIHISECNYVTISSL 177 (456)
T ss_pred ccceEEeccc---eEeCCchhhh-hcccCCceEEEEEecCCcEEeCeEEecCCc----------EEEEEeccccEEEEEE
Confidence 4689998875 6888773222 111111233444443210 1112333332 2588889999999999
Q ss_pred eeec-----CCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCC------cCcCcc-cc
Q 011814 237 SLSH-----CKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKL------VQRMPR-CR 304 (477)
Q Consensus 237 s~s~-----~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~------~qR~Pr-vR 304 (477)
++.. -.||+ | ...+++|+|.+|.+...+.+.-+.+.. .+|++.++.++.+. ..+... -.
T Consensus 178 ~I~ap~~spNTDGI-D-i~~S~nV~I~n~~I~tGDDCIaiksgs-------~NI~I~n~~c~~GHGISIGSlg~~g~~~~ 248 (456)
T PLN03003 178 RINAPESSPNTDGI-D-VGASSNVVIQDCIIATGDDCIAINSGT-------SNIHISGIDCGPGHGISIGSLGKDGETAT 248 (456)
T ss_pred EEeCCCCCCCCCcE-e-ecCcceEEEEecEEecCCCeEEeCCCC-------ccEEEEeeEEECCCCeEEeeccCCCCcce
Confidence 9975 46887 7 467999999999999998887776542 25777777663221 111110 00
Q ss_pred cceEEEEcceEeC
Q 011814 305 RGYIHVVNNDFTE 317 (477)
Q Consensus 305 ~G~vHvvNN~y~n 317 (477)
.-.+++.|+.+++
T Consensus 249 V~NV~v~n~~~~~ 261 (456)
T PLN03003 249 VENVCVQNCNFRG 261 (456)
T ss_pred EEEEEEEeeEEEC
Confidence 1257788888875
No 24
>PLN02155 polygalacturonase
Probab=97.37 E-value=0.0036 Score=66.55 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=94.6
Q ss_pred eEEEEccceEEeecceEEecCCcEEeccCceEEE--e-c------ceeEEEeeeccEEEEeeEEEeeeccCCceeccCCC
Q 011814 140 LWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHI--T-G------GGCITLQYISNVIIHNIHIHHCVESGNANVRSSPT 210 (477)
Q Consensus 140 ~~IvF~~~g~I~l~~~L~V~SnkTI~G~Ga~i~I--~-G------~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~ 210 (477)
.||.|..- +.+.|.. =||+|||..--- . + ...|++.+++||.|++|++++..
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp------------ 167 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQ------------ 167 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCC------------
Confidence 47766542 2344433 678888864110 0 0 01478889999999999999741
Q ss_pred cccccccCCCCcEEeeCCccEEEEeeeeec-----CCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEE
Q 011814 211 HYGYRTKSDGDGISIFGSKDLWIDHCSLSH-----CKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQV 285 (477)
Q Consensus 211 ~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~-----~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~V 285 (477)
-| .|++.+++||.|+|.++.. -.||. | ...+++|+|++|.|...+.+..+++.. .+|
T Consensus 168 --~w-------~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-d-i~~s~nV~I~~~~I~~gDDcIaik~gs-------~nI 229 (394)
T PLN02155 168 --VS-------HMTLNGCTNVVVRNVKLVAPGNSPNTDGF-H-VQFSTGVTFTGSTVQTGDDCVAIGPGT-------RNF 229 (394)
T ss_pred --Ce-------EEEEECeeeEEEEEEEEECCCCCCCCCcc-c-cccceeEEEEeeEEecCCceEEcCCCC-------ceE
Confidence 12 5888999999999999964 45887 7 467999999999999988887776642 268
Q ss_pred EEEeeEECCCC------cCcCc-ccccceEEEEcceEeCC
Q 011814 286 TIAFNHFGEKL------VQRMP-RCRRGYIHVVNNDFTEW 318 (477)
Q Consensus 286 TihhN~F~~n~------~qR~P-rvR~G~vHvvNN~y~nw 318 (477)
++.++.+..+. ..+.+ .-..-.+.|.|+.+.+-
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGS 269 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCC
Confidence 88777774211 11111 11112577888888753
No 25
>PLN02793 Probable polygalacturonase
Probab=97.34 E-value=0.0036 Score=67.45 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=89.4
Q ss_pred eEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeec-----CCCCeEEeeeCC
Q 011814 178 CITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSH-----CKDGLIDAVMGS 252 (477)
Q Consensus 178 ~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~-----~~DGliDv~~gS 252 (477)
.|.+.+++||.|++|++++.. .| .|++.+++||.|++.++.. -.||+ | ...+
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp--------------~~-------~i~~~~~~nv~i~~l~I~~p~~spNTDGI-d-i~~s 235 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQ--------------QM-------HIAFTNCRRVTISGLKVIAPATSPNTDGI-H-ISAS 235 (443)
T ss_pred EEEEEeeccEEEECeEEEcCC--------------Ce-------EEEEEccCcEEEEEEEEECCCCCCCCCcE-e-eecc
Confidence 478889999999999999741 12 4788899999999999965 46887 7 4679
Q ss_pred CeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCc------CcCcc-cccceEEEEcceEeCCcceEee-
Q 011814 253 TGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLV------QRMPR-CRRGYIHVVNNDFTEWEMYAIG- 324 (477)
Q Consensus 253 t~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~------qR~Pr-vR~G~vHvvNN~y~nw~~Yaig- 324 (477)
++|+|++|.+...+.+..+.+.. .+|++.++.+..+.. .+... .-.-.+.+-|+.+.+-. +++.
T Consensus 236 ~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirI 307 (443)
T PLN02793 236 RGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRI 307 (443)
T ss_pred ceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEE
Confidence 99999999999998887775432 368888877743210 01010 00114677777777531 2221
Q ss_pred ------cCCCceEEeeCcEEeCCCCC
Q 011814 325 ------GSGNPTINSQGNRYTAPTNR 344 (477)
Q Consensus 325 ------~s~~~~I~segN~F~~~~~~ 344 (477)
++.-..|.+++-+.++..+|
T Consensus 308 Kt~~g~~G~v~nItf~ni~m~nv~~p 333 (443)
T PLN02793 308 KTWQGGSGNASKITFQNIFMENVSNP 333 (443)
T ss_pred EEeCCCCEEEEEEEEEeEEEecCCce
Confidence 11223455566555555544
No 26
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.23 E-value=0.0082 Score=56.38 Aligned_cols=103 Identities=23% Similarity=0.283 Sum_probs=62.8
Q ss_pred hHHHHH--h-CCCCeEEEEccceEEeecceEEecCCcEEeccCce-EEEe--cc--------eeEEEee-ecc--EEEEe
Q 011814 129 TLRYAV--I-QPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGAN-VHIT--GG--------GCITLQY-ISN--VIIHN 191 (477)
Q Consensus 129 sLR~Av--~-q~~P~~IvF~~~g~I~l~~~L~V~SnkTI~G~Ga~-i~I~--G~--------g~i~i~~-a~N--VIIRn 191 (477)
.|..|+ . ..+..+|.|.. |+-.+++.|.+.++++|.|.|.. ..+. +. +...+.. ..+ +-|+|
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P~-G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n 98 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFPP-GTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRN 98 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE-S-EEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEcC-cEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEe
Confidence 477887 3 35566666654 68888888999999999998774 3333 11 1011111 112 44999
Q ss_pred eEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEE
Q 011814 192 IHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLID 247 (477)
Q Consensus 192 L~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliD 247 (477)
|+|...... . ....++|.+..+++++|++|++.++..-.+.
T Consensus 99 l~i~~~~~~-------------~--~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~ 139 (225)
T PF12708_consen 99 LTIDGNGID-------------P--NNNNNGIRFNSSQNVSISNVRIENSGGDGIY 139 (225)
T ss_dssp EEEEETCGC-------------E---SCEEEEEETTEEEEEEEEEEEES-SS-SEE
T ss_pred eEEEccccc-------------C--CCCceEEEEEeCCeEEEEeEEEEccCccEEE
Confidence 998763210 0 1124788898999999999999987444334
No 27
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.16 E-value=0.032 Score=59.13 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=120.6
Q ss_pred HHHHHhCCCCeEEEEccceEEeecceEEecCCcEEeccCceEEEecce--eEEE---------eeeccEEEEeeEEEeee
Q 011814 130 LRYAVIQPQPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHITGGG--CITL---------QYISNVIIHNIHIHHCV 198 (477)
Q Consensus 130 LR~Av~q~~P~~IvF~~~g~I~l~~~L~V~SnkTI~G~Ga~i~I~G~g--~i~i---------~~a~NVIIRnL~I~~~~ 198 (477)
|-+|+.+-. -|..+.+-+-.+++.|.|.+..+|+|+||-+.|.+.+ .+++ .+-.+|.+.|++|..-
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 666665543 3455555566677889999999999999988886432 2443 2456777777777641
Q ss_pred ccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCC
Q 011814 199 ESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYL 278 (477)
Q Consensus 199 ~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~ 278 (477)
..-.|+-+...+++.|..|+|....--.++. .....|..|+|...+|.... .+.
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~---~~~~~VrGC~F~~C~~gi~~-~~~--- 187 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLES---WAGGEVRGCTFYGCWKGIVS-RGK--- 187 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEE---cCCcEEeeeEEEEEEEEeec-CCc---
Confidence 1235788889999999999999987666654 36789999999988886532 221
Q ss_pred CCCCcEEEEEeeEECCCCcCcCcccccceEEEEcceEeCCcceEeecCCCceEEeeCcEEeCCCC
Q 011814 279 PDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGNPTINSQGNRYTAPTN 343 (477)
Q Consensus 279 ~D~g~~VTihhN~F~~n~~qR~PrvR~G~vHvvNN~y~nw~~Yaig~s~~~~I~segN~F~~~~~ 343 (477)
.++++.+|.| +.+.==. +-.|..++.+|.+.+-.-..+-. .+-.+.+|.|..+.+
T Consensus 188 ----~~lsVk~C~F-ekC~igi--~s~G~~~i~hn~~~ec~Cf~l~~---g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 188 ----SKLSVKKCVF-EKCVIGI--VSEGPARIRHNCASECGCFVLMK---GTGSIKHNMVCGPND 242 (386)
T ss_pred ----ceEEeeheee-eheEEEE--EecCCeEEecceecccceEEEEc---ccEEEeccEEeCCCC
Confidence 4688899999 4222111 22478999999999876444322 245568899987765
No 28
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.94 E-value=0.045 Score=54.91 Aligned_cols=187 Identities=23% Similarity=0.247 Sum_probs=101.6
Q ss_pred hhHHHHHhCCCCeEEEEccceEEeec----ceEEecCCcEEeccCc-----eEE---------Eecce------eEEEee
Q 011814 128 GTLRYAVIQPQPLWIVFPSNMLIKLS----QELIFNSYKTLDGRGA-----NVH---------ITGGG------CITLQY 183 (477)
Q Consensus 128 GsLR~Av~q~~P~~IvF~~~g~I~l~----~~L~V~SnkTI~G~Ga-----~i~---------I~G~g------~i~i~~ 183 (477)
-|+.+|+.+..|-.+|.=..|+-+-. -+|.+.+.+||.|... .+. |.|.+ .++|..
T Consensus 16 ~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 16 KTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 47788886654443333334444332 3477788888887532 122 23322 255666
Q ss_pred eccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecC-CCCeEEeee----CCCeEEEE
Q 011814 184 ISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHC-KDGLIDAVM----GSTGITIS 258 (477)
Q Consensus 184 a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~-~DGliDv~~----gSt~VTIS 258 (477)
+++..|++++|++..+ ..+-||.|.++ +.-|..|+|+.+ ++|+..... ...+++|+
T Consensus 96 ~~~~~i~GvtItN~n~------------------~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPNI------------------ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCCC------------------CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 7888888888886311 24568999877 899999999996 777643211 34567777
Q ss_pred cceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcC------cCcccccc-eEEEEcceEeCCcceEeecCC--Cc
Q 011814 259 NNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQ------RMPRCRRG-YIHVVNNDFTEWEMYAIGGSG--NP 329 (477)
Q Consensus 259 nn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~q------R~PrvR~G-~vHvvNN~y~nw~~Yaig~s~--~~ 329 (477)
.|.+.......-+ ++.... ....+.+|++.+ +.+ ..|-+-.+ ...+=||.+.+-+.|.+.... ..
T Consensus 157 GN~~~~~~~Gi~i--~~~~~~---~~n~I~NN~I~~-N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~ 230 (246)
T PF07602_consen 157 GNSIYFNKTGISI--SDNAAP---VENKIENNIIEN-NNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQ 230 (246)
T ss_pred cceEEecCcCeEE--EcccCC---ccceeeccEEEe-CCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCce
Confidence 7776643321111 111000 112335555532 111 01222211 223566777776666665532 24
Q ss_pred eEEeeCcEEe
Q 011814 330 TINSQGNRYT 339 (477)
Q Consensus 330 ~I~segN~F~ 339 (477)
++.+.||...
T Consensus 231 ~l~a~gN~ld 240 (246)
T PF07602_consen 231 TLYAVGNQLD 240 (246)
T ss_pred eEEEeCCccC
Confidence 6677777654
No 29
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.88 E-value=0.0093 Score=61.47 Aligned_cols=108 Identities=19% Similarity=0.317 Sum_probs=76.1
Q ss_pred EEecCCcEEeccCceE-EEec---------ceeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEe
Q 011814 156 LIFNSYKTLDGRGANV-HITG---------GGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISI 225 (477)
Q Consensus 156 L~V~SnkTI~G~Ga~i-~I~G---------~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I 225 (477)
+.+.-.=||+|+|..- ...+ ...|.+.+++|+.|++|+|++.. .| .+++
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp--------------~w-------~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP--------------FW-------HIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S--------------SE-------SEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC--------------ee-------EEEE
Confidence 3444445888887720 0001 12588889999999999999741 13 5888
Q ss_pred eCCccEEEEeeeeec-----CCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEEC
Q 011814 226 FGSKDLWIDHCSLSH-----CKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFG 293 (477)
Q Consensus 226 ~gs~nVWIDHcs~s~-----~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~ 293 (477)
..++||+|+|.++.. ..||+ |+ ..+++|+|.+|.+...+.+.-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~-~~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DI-DSSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EE-ESEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EE-EeeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 999999999999964 36887 74 578999999999998888766655421 7889899884
No 30
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.04 Score=57.48 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=59.0
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITIS 258 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTIS 258 (477)
|.+.++..+.|+..+|..-.. .|-...|+||+++.+..+-|-.|.++..+||++ .+-|+.-+|+
T Consensus 123 i~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy--~~~S~~~~~~ 186 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALVVGNDISYGRDGIY--SDTSQHNVFK 186 (408)
T ss_pred EEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEEEcCccccccceEE--Ecccccceec
Confidence 888999999999999986321 133457899999999999999999999999998 4678888888
Q ss_pred cceecc
Q 011814 259 NNYFSH 264 (477)
Q Consensus 259 nn~f~~ 264 (477)
.|.|++
T Consensus 187 gnr~~~ 192 (408)
T COG3420 187 GNRFRD 192 (408)
T ss_pred ccchhh
Confidence 888875
No 31
>PLN02304 probable pectinesterase
Probab=96.80 E-value=0.48 Score=50.44 Aligned_cols=136 Identities=15% Similarity=0.241 Sum_probs=86.6
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEE-ec------------ceeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHI-TG------------GGCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I-~G------------~g~i~i~~a~NVI 188 (477)
|+.+||.. +..+++|+-..|+ ..+.|.| .+|+||.|.|..-+| .. -+.+.+ .+++++
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~ 165 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFI 165 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeE
Confidence 67777732 3335555555554 3456677 589999999876333 21 123444 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.+||+|++..+.. .+ + ..++-|+-+. .++.+-+.+|.|.-..|=|++ ....--..+|+|..+-.
T Consensus 166 a~nITf~Nta~~~------~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~---~~gR~Yf~~CyIeG~VD 230 (379)
T PLN02304 166 AKNISFMNVAPIP------KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHD---DRGRHYFKDCYIQGSID 230 (379)
T ss_pred EEeeEEEecCCCC------CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEe---CCCCEEEEeeEEccccc
Confidence 9999999864310 00 0 1123355554 589999999999999999986 23456677888885433
Q ss_pred EEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 268 VMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 268 ~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+++|.. +.-|.+|.+
T Consensus 231 -FIFG~g---------~A~Fe~C~I 245 (379)
T PLN02304 231 -FIFGDA---------RSLYENCRL 245 (379)
T ss_pred -EEeccc---------eEEEEccEE
Confidence 456654 456666666
No 32
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.64 E-value=0.028 Score=60.04 Aligned_cols=168 Identities=21% Similarity=0.264 Sum_probs=105.9
Q ss_pred eEEEEccceEEeecceEEecCCcEEeccCceEE------Ee----c-ceeEEEeeeccEEEEeeEEEeeeccCCceeccC
Q 011814 140 LWIVFPSNMLIKLSQELIFNSYKTLDGRGANVH------IT----G-GGCITLQYISNVIIHNIHIHHCVESGNANVRSS 208 (477)
Q Consensus 140 ~~IvF~~~g~I~l~~~L~V~SnkTI~G~Ga~i~------I~----G-~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~s 208 (477)
.||.|.. -..|.|.-.=||+|+|..-- .. . .-.|.+..++||.|++|+|++...
T Consensus 114 ~~i~~~~------~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~--------- 178 (404)
T PLN02188 114 DWIEFGW------VNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKF--------- 178 (404)
T ss_pred ceEEEec------eeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCC---------
Confidence 4777741 13355545677888886310 00 0 114678899999999999997411
Q ss_pred CCcccccccCCCCcEEeeCCccEEEEeeeeec-----CCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCc
Q 011814 209 PTHYGYRTKSDGDGISIFGSKDLWIDHCSLSH-----CKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGM 283 (477)
Q Consensus 209 p~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~-----~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~ 283 (477)
| .|++..++||.|++.++.. -.||+ | ...+++|+|.+|.|...+.+.-+.+.. .
T Consensus 179 -----w-------~i~~~~~~~v~i~~v~I~~~~~spNtDGi-d-i~~s~nV~I~n~~I~~GDDcIaiksg~-------~ 237 (404)
T PLN02188 179 -----F-------HIALVECRNFKGSGLKISAPSDSPNTDGI-H-IERSSGVYISDSRIGTGDDCISIGQGN-------S 237 (404)
T ss_pred -----e-------EEEEEccccEEEEEEEEeCCCCCCCCCcE-e-eeCcccEEEEeeEEeCCCcEEEEccCC-------c
Confidence 2 5889999999999999875 46887 7 467999999999999988887775432 2
Q ss_pred EEEEEeeEECCCC------cCcCcc-cccceEEEEcceEeCCcceEeec---------CCCceEEeeCcEEeCCCCC
Q 011814 284 QVTIAFNHFGEKL------VQRMPR-CRRGYIHVVNNDFTEWEMYAIGG---------SGNPTINSQGNRYTAPTNR 344 (477)
Q Consensus 284 ~VTihhN~F~~n~------~qR~Pr-vR~G~vHvvNN~y~nw~~Yaig~---------s~~~~I~segN~F~~~~~~ 344 (477)
+|++.++.+..+. ..+.+- -....+.+-|+.+++- .+++.. +.-..|.+++-.++....|
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t-~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGT-TNGIRIKTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECC-CcEEEEEEecCCCCceEEEEEEEEeEEecCccce
Confidence 5777777663211 000000 0012567778877763 222221 1123466667666665554
No 33
>PLN02197 pectinesterase
Probab=96.62 E-value=0.031 Score=62.28 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=94.4
Q ss_pred Ccchh--cchhccccCCcCcCCCCcCCCCCeE---EEEc-CCCCCCCCCCCchhHHHHHhC----CCCeEEEEccceEEe
Q 011814 82 DPDWA--NNRQRLADCVIGFGQYAMGGKGGEY---YIVT-DSSDDDAVSPKPGTLRYAVIQ----PQPLWIVFPSNMLIK 151 (477)
Q Consensus 82 ~~~w~--~~r~~LA~~a~GFG~~ttGG~gG~v---y~VT-~~~D~~~~~p~pGsLR~Av~q----~~P~~IvF~~~g~I~ 151 (477)
.|.|- .+|+.|+ +.+.|.++-||..+.+ ++|. |-+. .=-|+.+||.. +..++||+-..|+
T Consensus 244 ~p~w~~~~~r~ll~--~~~~~~~~~~~~~~~~~~~~vVa~dGsG------~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv-- 313 (588)
T PLN02197 244 IPTWVSGADRKLMA--KAGRGANAGGGGGGKIKATHVVAKDGSG------QFKTISQAVMACPDKNPGRCIIHIKAGI-- 313 (588)
T ss_pred CCCCCCccchhhhc--cCcccccccccccccccccEEEcCCCCC------CcCCHHHHHHhccccCCceEEEEEeCce--
Confidence 47886 5577775 3555667777765542 3333 2111 12377888843 3346666655565
Q ss_pred ecceEEe---cCCcEEeccCceEEEe-c--------c------eeEEEeeeccEEEEeeEEEeeeccCCceeccCCCccc
Q 011814 152 LSQELIF---NSYKTLDGRGANVHIT-G--------G------GCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYG 213 (477)
Q Consensus 152 l~~~L~V---~SnkTI~G~Ga~i~I~-G--------~------g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g 213 (477)
.++.+.| .+|+||.|.|..-+|. + + +.+.+ .+++++.|||+|++...
T Consensus 314 Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag-------------- 378 (588)
T PLN02197 314 YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAG-------------- 378 (588)
T ss_pred EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCC--------------
Confidence 3355666 4699999998763332 1 1 13334 68999999999998421
Q ss_pred ccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceeccc
Q 011814 214 YRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHH 265 (477)
Q Consensus 214 ~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h 265 (477)
..+.-|+-+. .++..-+.+|.|....|=|++ .+..--..+|+|...
T Consensus 379 ---~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~---~~~Rqyy~~C~I~Gt 425 (588)
T PLN02197 379 ---PMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV---NNGRQFYRNIVVSGT 425 (588)
T ss_pred ---CCCCceEEEEecCCcEEEEEeEEEecCcceEe---cCCCEEEEeeEEEec
Confidence 0122355554 589999999999998888875 233445666766643
No 34
>PLN02682 pectinesterase family protein
Probab=96.57 E-value=0.83 Score=48.53 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=78.5
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eec------------------ceeEEEe
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITG------------------GGCITLQ 182 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G------------------~g~i~i~ 182 (477)
|+.+||.. +..+++|+=..|+ .++.+.| .+|+||.|.|..-+ |.. -+.+.+
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v- 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV- 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-
Confidence 66677632 2234444444454 3455666 57999999987633 321 013444
Q ss_pred eeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcce
Q 011814 183 YISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNY 261 (477)
Q Consensus 183 ~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~ 261 (477)
.+++++.+||+|++..+.. .+ | ..++-|+-+. .++++-+.+|.|....|=|++ ....--..+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~------~~---g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~---~~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVP------PP---G---ALGKQAVALRISADTAAFYGCKFLGAQDTLYD---HLGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccC------CC---C---CCcccEEEEEecCCcEEEEcceEeccccceEE---CCCCEEEEeeE
Confidence 6899999999999864310 00 0 1122344443 489999999999999998886 23456777888
Q ss_pred ecccceEEEecCC
Q 011814 262 FSHHNEVMLLGHS 274 (477)
Q Consensus 262 f~~h~k~mLiG~s 274 (477)
|..+-. +++|..
T Consensus 226 IeG~VD-FIFG~g 237 (369)
T PLN02682 226 IEGSVD-FIFGNG 237 (369)
T ss_pred Eccccc-EEecCc
Confidence 875432 355554
No 35
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.47 E-value=0.96 Score=51.45 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=70.5
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEEe-cc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHIT-GG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I~-G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. +..++||+-..|+ .++.+.| ..|+||.|.|..-+|. +. +.+.+ .+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeE
Confidence 66677732 2334555544454 3455666 3588999998764433 21 13444 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecc
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSH 264 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~ 264 (477)
.|||+|++... ...+-|+-++ .+++.-+.+|.|....|=|++ .+..--..+|++..
T Consensus 341 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~---~~~Rqyy~~C~I~G 397 (670)
T PLN02217 341 AKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYA---HSHRQFYRDCTISG 397 (670)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhcc---CCCcEEEEeCEEEE
Confidence 99999998531 1123455554 588999999999887777764 13344555666654
No 36
>smart00656 Amb_all Amb_all domain.
Probab=96.31 E-value=0.21 Score=47.88 Aligned_cols=136 Identities=21% Similarity=0.195 Sum_probs=80.7
Q ss_pred CCcEEeccCceEEEecceeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCc-EEee-CCccEEEEeee
Q 011814 160 SYKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDG-ISIF-GSKDLWIDHCS 237 (477)
Q Consensus 160 SnkTI~G~Ga~i~I~G~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDa-I~I~-gs~nVWIDHcs 237 (477)
.|++|.+.... ...++-.|.+..++||+|.+++|.....-+ . .....|+ +.+. ++.+|=|-.|.
T Consensus 45 rnl~i~~~~~~-~~~~~D~i~~~~~~~VwIDHct~s~~~~~~------------~-~~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 45 RNLTIHDPKPV-YGSDGDAISIDGSSNVWIDHVSLSGCTVTG------------F-GDDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eCCEEECCccC-CCCCCCEEEEeCCCeEEEEccEeEcceecc------------C-CCCCCCccEEECcccccEEEECce
Confidence 46777764331 111222488889999999999998742110 0 0112344 4454 57888888888
Q ss_pred eecCCCCeEEeeeCC------CeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCccccc-ceEEE
Q 011814 238 LSHCKDGLIDAVMGS------TGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRR-GYIHV 310 (477)
Q Consensus 238 ~s~~~DGliDv~~gS------t~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~-G~vHv 310 (477)
|..+.-+.+--...+ -.||+.+|+|.+... -... -+..++-+.+|+| .+..+..--++. +++.+
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~-----R~P~---~r~g~~hv~NN~~-~n~~~~~~~~~~~~~v~~ 181 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQ-----RAPR---VRFGYVHVYNNYY-TGWTSYAIGGRMGATILS 181 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcCccc-----CCCc---ccCCEEEEEeeEE-eCcccEeEecCCCcEEEE
Confidence 876655554211111 269999999986321 1111 1123688899999 454433333333 48999
Q ss_pred EcceEeCC
Q 011814 311 VNNDFTEW 318 (477)
Q Consensus 311 vNN~y~nw 318 (477)
-||+|++-
T Consensus 182 E~N~F~~~ 189 (190)
T smart00656 182 EGNYFEAP 189 (190)
T ss_pred ECeEEECC
Confidence 99999863
No 37
>PLN02634 probable pectinesterase
Probab=96.27 E-value=1.5 Score=46.42 Aligned_cols=116 Identities=15% Similarity=0.275 Sum_probs=72.3
Q ss_pred eEEEEccceEEeecceEEe---cCCcEEeccCceEEEe-c------------------ceeEEEeeeccEEEEeeEEEee
Q 011814 140 LWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHIT-G------------------GGCITLQYISNVIIHNIHIHHC 197 (477)
Q Consensus 140 ~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I~-G------------------~g~i~i~~a~NVIIRnL~I~~~ 197 (477)
+++|+-..|+ .++.|.| .+|+||.|.|...+|. . -+.+++ .+++++.+||+|++.
T Consensus 85 r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V-~a~~F~a~niTf~Nt 161 (359)
T PLN02634 85 SVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV-YANYFTARNISFKNT 161 (359)
T ss_pred cEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-ECCCeEEEeCeEEeC
Confidence 4444444455 3455666 5799999998764443 1 012444 689999999999986
Q ss_pred eccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCC
Q 011814 198 VESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHS 274 (477)
Q Consensus 198 ~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~s 274 (477)
.+... + + ..++-|+-+. .++++-+.+|.|....|=|++ ....--..+|++..+-. +++|..
T Consensus 162 a~~~~------~---g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~---~~gR~yf~~CyIeG~VD-FIFG~g 223 (359)
T PLN02634 162 APAPM------P---G---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCD---DAGRHYFKECYIEGSID-FIFGNG 223 (359)
T ss_pred CccCC------C---C---CCCCceEEEEecCCcEEEEEeEEecccceeee---CCCCEEEEeeEEccccc-EEcCCc
Confidence 43100 0 1 1223344443 478899999999999998875 23456667787775432 345554
No 38
>PLN02665 pectinesterase family protein
Probab=96.23 E-value=1.2 Score=47.27 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=79.4
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceE-EEec-----------ceeEEEeeeccEEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANV-HITG-----------GGCITLQYISNVII 189 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i-~I~G-----------~g~i~i~~a~NVII 189 (477)
|+.+||.. +..++||+-..|+ .++.+.| .+++||.|.+... .|.. -+.+.+ .+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGE--YNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcE--EEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEE
Confidence 67777732 3345666655665 3456666 5789999997753 2322 123444 7899999
Q ss_pred EeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceE
Q 011814 190 HNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEV 268 (477)
Q Consensus 190 RnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~ 268 (477)
+||+|++..+...+ . ..++-++-+. .++++-+.+|.|....|=|++- ...--..+|+|...-.
T Consensus 159 ~nitf~Nta~~~~~------~------~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~---~gr~yf~~CyIeG~VD- 222 (366)
T PLN02665 159 ANIIIKNSAPRPDG------K------RKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD---KGRHFFKDCYIEGTVD- 222 (366)
T ss_pred EeeEEEeCCCCcCC------C------CCCcceEEEEEcCCcEEEEcceeccccceeEeC---CCCEEEEeeEEeeccc-
Confidence 99999986431110 0 1122344433 4688999999999999988862 3355667787775432
Q ss_pred EEecCC
Q 011814 269 MLLGHS 274 (477)
Q Consensus 269 mLiG~s 274 (477)
+++|..
T Consensus 223 FIFG~g 228 (366)
T PLN02665 223 FIFGSG 228 (366)
T ss_pred eecccc
Confidence 355654
No 39
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=96.19 E-value=0.0013 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.8
Q ss_pred cCCCCCCChHHHHHHhhhhhcccc
Q 011814 27 TFPIPHPNPEDVAQDVHRRVNASV 50 (477)
Q Consensus 27 ~~~~~~~~p~~~~~~~~~~~~~~~ 50 (477)
++.+|+|||++|+++||+.|+.++
T Consensus 20 a~~aY~pdP~~Vt~~FN~~V~~~~ 43 (56)
T PF04431_consen 20 ALAAYVPDPENVTNEFNRHVHRAM 43 (56)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHH
Confidence 568899999999999999999776
No 40
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.13 E-value=0.075 Score=58.74 Aligned_cols=101 Identities=22% Similarity=0.284 Sum_probs=71.9
Q ss_pred eEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeee-------
Q 011814 178 CITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVM------- 250 (477)
Q Consensus 178 ~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~------- 250 (477)
++..+.++|+.++||+|....+ ...|||.+.+++||-|+.|.|+...| .|-++.
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~~ 323 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDGK 323 (542)
T ss_pred EEeeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCccc
Confidence 3667789999999999986321 15699999999999999999998544 333332
Q ss_pred ----CCCeEEEEcceecccceEEEecCCCCCCCCCC-cEEEEEeeEECCCCcCcCccc
Q 011814 251 ----GSTGITISNNYFSHHNEVMLLGHSDDYLPDSG-MQVTIAFNHFGEKLVQRMPRC 303 (477)
Q Consensus 251 ----gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g-~~VTihhN~F~~n~~qR~Prv 303 (477)
-+.+|+|++|+|..-.-...+|+.- +.+ ..+++..|.| .+ ..|.=|+
T Consensus 324 ~~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 324 KGYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred ccccccccEEEecceecccccceEeeeec----CCceeEEEEEeeee-cc-Ccceeee
Confidence 2467999999999544444455432 223 5789999999 33 5566555
No 41
>PLN02497 probable pectinesterase
Probab=96.01 E-value=2.4 Score=44.49 Aligned_cols=138 Identities=12% Similarity=0.186 Sum_probs=83.4
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceE-EEe--------cceeEEEeeeccEEEEee
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANV-HIT--------GGGCITLQYISNVIIHNI 192 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i-~I~--------G~g~i~i~~a~NVIIRnL 192 (477)
|+.+||.. +..+++|+-..|+ .++.+.| .+++||.|.|..- .|. +-+.+.+ .+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G~--Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAGL--YREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCcE--EEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEcc
Confidence 45666632 2334445444454 3455666 5899999998752 232 1234555 7899999999
Q ss_pred EEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEe
Q 011814 193 HIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLL 271 (477)
Q Consensus 193 ~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLi 271 (477)
+|++..... .. +. ....+-|+-+. .++++-+.+|.|....|=|++ ....--..+|++..+-. +++
T Consensus 123 T~~Nt~~~~--------~~-~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~---~~gRqyf~~C~IeG~VD-FIF 188 (331)
T PLN02497 123 TFANSYNFP--------SK-GN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWD---SDGRHYFKRCTIQGAVD-FIF 188 (331)
T ss_pred EEEeCCCCc--------cc-cC-CCCCcceEEEEecCCcEEEEeeEEeccccceee---CCCcEEEEeCEEEeccc-EEc
Confidence 999864210 00 00 01122355544 588999999999999999985 23456677887775422 355
Q ss_pred cCCCCCCCCCCcEEEEEeeEE
Q 011814 272 GHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 272 G~sd~~~~D~g~~VTihhN~F 292 (477)
|.. +.-|+++.+
T Consensus 189 G~g---------~a~Fe~C~I 200 (331)
T PLN02497 189 GSG---------QSIYESCVI 200 (331)
T ss_pred cCc---------eEEEEccEE
Confidence 543 455666666
No 42
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.14 Score=53.53 Aligned_cols=132 Identities=22% Similarity=0.310 Sum_probs=70.1
Q ss_pred ceEEecCCcEEeccCceEEEecc---eeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCc
Q 011814 154 QELIFNSYKTLDGRGANVHITGG---GCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSK 229 (477)
Q Consensus 154 ~~L~V~SnkTI~G~Ga~i~I~G~---g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~ 229 (477)
..+.|+.-+|+.|.-. +++.|+ +.+++ .+.++|||+|++|+. |. +. ...+-+|-+. .++
T Consensus 45 g~~vInr~l~l~ge~g-a~l~g~g~G~~vtv-~aP~~~v~Gl~vr~s---g~----~l--------p~m~agI~v~~~at 107 (408)
T COG3420 45 GNFVINRALTLRGENG-AVLDGGGKGSYVTV-AAPDVIVEGLTVRGS---GR----SL--------PAMDAGIFVGRTAT 107 (408)
T ss_pred ccEEEccceeeccccc-cEEecCCcccEEEE-eCCCceeeeEEEecC---CC----Cc--------ccccceEEeccCcc
Confidence 3455666666667632 244432 24666 799999999999952 10 00 1122234332 345
Q ss_pred cEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecc-----------------cceEEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 230 DLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSH-----------------HNEVMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 230 nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~-----------------h~k~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
.--|.||.+-.+.-|++ .+++..+-|.-|.+.. ...+...|..-+|..|.-.--|=+||.|
T Consensus 108 ~A~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~ 185 (408)
T COG3420 108 GAVVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF 185 (408)
T ss_pred cceEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee
Confidence 55555555555555554 4455555555555442 1122333333344444333345588888
Q ss_pred CCCCcCcCcccccce
Q 011814 293 GEKLVQRMPRCRRGY 307 (477)
Q Consensus 293 ~~n~~qR~PrvR~G~ 307 (477)
.. .|+-.+|||.
T Consensus 186 ~g---nr~~~~Rygv 197 (408)
T COG3420 186 KG---NRFRDLRYGV 197 (408)
T ss_pred cc---cchhheeeeE
Confidence 43 3777888874
No 43
>PLN02671 pectinesterase
Probab=95.89 E-value=3 Score=44.27 Aligned_cols=135 Identities=11% Similarity=0.154 Sum_probs=80.5
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCc---eEEEecc------------------eeEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGA---NVHITGG------------------GCIT 180 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga---~i~I~G~------------------g~i~ 180 (477)
|+.+||.. +..+++|+=..|+ .++.|.| .+++||.|.|. +..|... +.+.
T Consensus 73 TIQ~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~ 150 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYILPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT 150 (359)
T ss_pred CHHHHHHhchhcCCccEEEEEeCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence 55666632 2234444444454 3455666 57999999874 3344410 1233
Q ss_pred EeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEc
Q 011814 181 LQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISN 259 (477)
Q Consensus 181 i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISn 259 (477)
+ .+++++.+||+|++...... + ...+-|+-+. .++++-+.+|.|.-..|=|++ . ...--..+
T Consensus 151 v-~a~~F~a~nitfeNt~~~~~----------g---~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~-~--~gR~yf~~ 213 (359)
T PLN02671 151 I-ESDYFCATGITFENTVVAEP----------G---GQGMQAVALRISGDKAFFYKVRVLGAQDTLLD-E--TGSHYFYQ 213 (359)
T ss_pred E-ECCceEEEeeEEEcCCCCCC----------C---CCCccEEEEEEcCccEEEEcceEeccccccEe-C--CCcEEEEe
Confidence 4 68999999999998632110 0 1122344433 478999999999999999885 2 34556778
Q ss_pred ceecccceEEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 260 NYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 260 n~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
|++..+-. +++|.. +.-|.++.+
T Consensus 214 CyIeG~VD-FIFG~g---------~A~Fe~C~I 236 (359)
T PLN02671 214 CYIQGSVD-FIFGNA---------KSLYQDCVI 236 (359)
T ss_pred cEEEEecc-EEecce---------eEEEeccEE
Confidence 88775432 355553 355555555
No 44
>PLN02176 putative pectinesterase
Probab=95.89 E-value=0.38 Score=50.47 Aligned_cols=128 Identities=18% Similarity=0.246 Sum_probs=81.3
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEEe---------cceeEEEeeeccEEEEee
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHIT---------GGGCITLQYISNVIIHNI 192 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I~---------G~g~i~i~~a~NVIIRnL 192 (477)
|+.+||.. +..+++|+-..|+- ++.|.| .+|+||.|.|...+|. +.+.+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~GvY--~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGIY--REKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcEE--EEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 67777732 33456666556663 355666 5799999998764433 1234556 6899999999
Q ss_pred EEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEe
Q 011814 193 HIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLL 271 (477)
Q Consensus 193 ~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLi 271 (477)
+|++..+..+ ++ ....+-|+-+. .++++-+.+|.|.-..|=|++ ....--..+|+|+.+-. +++
T Consensus 130 T~~Nt~~~~~-----~~------~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~---~~gRqyf~~CyIeG~VD-FIF 194 (340)
T PLN02176 130 TFKNTYNIAS-----NS------SRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFD---GKGRHYYKRCVISGGID-FIF 194 (340)
T ss_pred EEEeCCCccC-----CC------CCCccceEEEEecCccEEEEccEEecccceeEe---CCcCEEEEecEEEeccc-EEe
Confidence 9998643110 00 01123455544 478899999999998888885 23456677787775432 345
Q ss_pred cCC
Q 011814 272 GHS 274 (477)
Q Consensus 272 G~s 274 (477)
|..
T Consensus 195 G~a 197 (340)
T PLN02176 195 GYA 197 (340)
T ss_pred cCc
Confidence 554
No 45
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.83 E-value=0.047 Score=51.22 Aligned_cols=120 Identities=27% Similarity=0.373 Sum_probs=68.0
Q ss_pred CcEEeccCceEEEecceeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCC-cEEeeC-CccEEEEeeee
Q 011814 161 YKTLDGRGANVHITGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGD-GISIFG-SKDLWIDHCSL 238 (477)
Q Consensus 161 nkTI~G~Ga~i~I~G~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgD-aI~I~g-s~nVWIDHcs~ 238 (477)
+++|+|.+....=... ++.+..++|+.|+|++++++.. .+..-.....+... ..... ++.+.+ +.++++..|.+
T Consensus 98 nl~i~~~~~~~~~~~~-~i~~~~~~~~~i~nv~~~~~~~--~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T PF12708_consen 98 NLTIDGNGIDPNNNNN-GIRFNSSQNVSISNVRIENSGG--DGIYFNTGTDYRII-GSTHVSGIFIDNGSNNVIVNNCIF 173 (225)
T ss_dssp EEEEEETCGCE-SCEE-EEEETTEEEEEEEEEEEES-SS---SEEEECCEECEEE-CCEEEEEEEEESCEEEEEEECEEE
T ss_pred eeEEEcccccCCCCce-EEEEEeCCeEEEEeEEEEccCc--cEEEEEccccCcEe-ecccceeeeeccceeEEEECCccc
Confidence 5788887653210122 4788889999999999998532 11110000000000 01111 455554 34455677888
Q ss_pred ecCCCCeEEeeeCCCeEEEEcceecc-cceEE-EecCCCCCCCCCCcEEEEEeeEECCCCc
Q 011814 239 SHCKDGLIDAVMGSTGITISNNYFSH-HNEVM-LLGHSDDYLPDSGMQVTIAFNHFGEKLV 297 (477)
Q Consensus 239 s~~~DGliDv~~gSt~VTISnn~f~~-h~k~m-LiG~sd~~~~D~g~~VTihhN~F~~n~~ 297 (477)
..+.+|+ ..+.++++|+||.|.. ..... +-+.+ ++++.+|.| ++|.
T Consensus 174 ~~~~~g~---~~~~~~~~i~n~~~~~~~~~gi~i~~~~---------~~~i~n~~i-~~~~ 221 (225)
T PF12708_consen 174 NGGDNGI---ILGNNNITISNNTFEGNCGNGINIEGGS---------NIIISNNTI-ENCD 221 (225)
T ss_dssp ESSSCSE---ECEEEEEEEECEEEESSSSESEEEEECS---------EEEEEEEEE-ESSS
T ss_pred cCCCcee---EeecceEEEEeEEECCccceeEEEECCe---------EEEEEeEEE-ECCc
Confidence 8888882 3455899999999986 33333 33222 488888888 4554
No 46
>PLN02432 putative pectinesterase
Probab=95.79 E-value=0.36 Score=49.71 Aligned_cols=130 Identities=15% Similarity=0.262 Sum_probs=83.7
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEEe---------cceeEEEeeeccEEEEee
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHIT---------GGGCITLQYISNVIIHNI 192 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I~---------G~g~i~i~~a~NVIIRnL 192 (477)
|+.+||.. +..+++|+-..|+- ++.|.| .+|+||.|.+..-+|. +.+.+.+ .++|++.+||
T Consensus 25 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nl 101 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFL 101 (293)
T ss_pred CHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEee
Confidence 66677632 22344444444543 455666 5899999998764332 1224555 6899999999
Q ss_pred EEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEe
Q 011814 193 HIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLL 271 (477)
Q Consensus 193 ~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLi 271 (477)
+|++.... .+-|+-+. .++++-+.+|.|.-..|=|++ ....--..+|+|+.+-. +++
T Consensus 102 t~~Nt~g~------------------~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~---~~gr~yf~~c~I~G~VD-FIF 159 (293)
T PLN02432 102 TIQNTFGS------------------SGKAVALRVAGDRAAFYGCRILSYQDTLLD---DTGRHYYRNCYIEGATD-FIC 159 (293)
T ss_pred EEEeCCCC------------------CCceEEEEEcCCcEEEEcceEecccceeEE---CCCCEEEEeCEEEeccc-EEe
Confidence 99985321 12344444 579999999999999998885 23456777888875433 456
Q ss_pred cCCCCCCCCCCcEEEEEeeEE
Q 011814 272 GHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 272 G~sd~~~~D~g~~VTihhN~F 292 (477)
|.. +.-|++|.+
T Consensus 160 G~g---------~a~Fe~c~i 171 (293)
T PLN02432 160 GNA---------ASLFEKCHL 171 (293)
T ss_pred cCc---------eEEEEeeEE
Confidence 654 466666666
No 47
>PLN02773 pectinesterase
Probab=94.93 E-value=1.1 Score=46.66 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=80.4
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Ee-----------------cc-----ee
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-IT-----------------GG-----GC 178 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~-----------------G~-----g~ 178 (477)
|+.+||.. +..+++||=..|+ ..+.|.| .+|+||.|.+..-+ |. |. +.
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 66677632 2234555544554 3355666 46899999876532 22 10 23
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITI 257 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTI 257 (477)
+.+ .+++++.+||+|++..+. ..+-|+-+. .++++-+.+|.|....|=|++ + ...--+
T Consensus 97 v~v-~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~--~-~gr~yf 155 (317)
T PLN02773 97 VIV-EGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYL--H-YGKQYL 155 (317)
T ss_pred EEE-ECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEe--C-CCCEEE
Confidence 334 689999999999985321 122344443 478899999999998888874 2 245666
Q ss_pred EcceecccceEEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 258 SNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 258 Snn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
.+|+++.+-. +++|.. ++-|.+|.+
T Consensus 156 ~~c~IeG~VD-FIFG~g---------~a~Fe~c~i 180 (317)
T PLN02773 156 RDCYIEGSVD-FIFGNS---------TALLEHCHI 180 (317)
T ss_pred EeeEEeeccc-EEeecc---------EEEEEeeEE
Confidence 7787775432 355653 355555555
No 48
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=94.89 E-value=0.45 Score=49.28 Aligned_cols=117 Identities=21% Similarity=0.136 Sum_probs=70.5
Q ss_pred EEE-eeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcE-Eee-CCccEEEEeeeeecCCCCeEEee------
Q 011814 179 ITL-QYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGI-SIF-GSKDLWIDHCSLSHCKDGLIDAV------ 249 (477)
Q Consensus 179 i~i-~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI-~I~-gs~nVWIDHcs~s~~~DGliDv~------ 249 (477)
|.| ...+|+-|+|.+|.+.-. + +..+.+||. .|. ++..|=|-.|.|.++.-.++=-.
T Consensus 147 Isi~~~~~nIWIDH~tf~~~s~---------~-----~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~ 212 (345)
T COG3866 147 ISIYDDGHNIWIDHNTFSGGSY---------N-----ASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNY 212 (345)
T ss_pred EEeccCCeEEEEEeeEeccccc---------c-----ccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccc
Confidence 666 678899999999986311 0 223566764 343 57888888888877654443111
Q ss_pred -eCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCcccccc---eEEEEcceEeCC
Q 011814 250 -MGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRG---YIHVVNNDFTEW 318 (477)
Q Consensus 250 -~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~G---~vHvvNN~y~nw 318 (477)
.+--.||+.+|+|.+-..- .. .-|=-.|-+.+|+| ++...-.-..+.| .+++-||||.+.
T Consensus 213 ~~~~~kvT~hhNyFkn~~qR-----~P---riRfG~vHvyNNYy-~~~~~~g~a~~iG~~AkiyvE~NyF~~~ 276 (345)
T COG3866 213 DDGKYKVTIHHNYFKNLYQR-----GP---RIRFGMVHVYNNYY-EGNPKFGVAITIGTSAKIYVENNYFENG 276 (345)
T ss_pred cCCceeEEEecccccccccc-----CC---ceEeeEEEEecccc-ccCcccceEEeeccceEEEEecceeccC
Confidence 1223599999999864210 00 00002466777999 4322222233334 789999999985
No 49
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.66 E-value=0.97 Score=50.03 Aligned_cols=131 Identities=11% Similarity=0.185 Sum_probs=81.3
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eec------------ceeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITG------------GGCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G------------~g~i~i~~a~NVI 188 (477)
|+.+||.. +..+++|+-..|+- ++.+.| .+|+||.|.|..-+ |.+ -+.+.+ .+++++
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~ 296 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFI 296 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeE
Confidence 66777632 22345555444543 355666 46899999987633 322 123334 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.+||+|++... + ..+-|+-+. .++..-+.+|.|....|=|++ .+..--..+|+|...-.
T Consensus 297 a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~---~~~Rqyy~~C~I~GtVD 356 (520)
T PLN02201 297 ARDITFQNTAG--P---------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYT---HTMRQFYRECRITGTVD 356 (520)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEe---CCCCEEEEeeEEeeccc
Confidence 99999998531 0 122345544 478999999999999998885 23344556777765422
Q ss_pred EEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 268 VMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 268 ~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+++|.. ++-|.+|.+
T Consensus 357 -FIFG~a---------~avf~~C~i 371 (520)
T PLN02201 357 -FIFGDA---------TAVFQNCQI 371 (520)
T ss_pred -EEecCc---------eEEEEccEE
Confidence 355553 466666666
No 50
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=94.55 E-value=0.22 Score=48.05 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=70.5
Q ss_pred eEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCc-EEee-CCccEEEEeeeeecCCCCeEEe------e
Q 011814 178 CITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDG-ISIF-GSKDLWIDHCSLSHCKDGLIDA------V 249 (477)
Q Consensus 178 ~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDa-I~I~-gs~nVWIDHcs~s~~~DGliDv------~ 249 (477)
.|.+.+++||+|.+++|....... .....|+ |.+. ++++|=|-+|-|..+....+.- .
T Consensus 77 ai~i~~~~nVWIDH~sfs~~~~~~--------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~ 142 (200)
T PF00544_consen 77 AISIDNSSNVWIDHCSFSWGNFEC--------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNST 142 (200)
T ss_dssp SEEEESTEEEEEES-EEEETTS-G--------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGG
T ss_pred eEEEEecccEEEeccEEecccccc--------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccc
Confidence 589999999999999999852110 0112344 6665 5888989889888764443310 1
Q ss_pred eCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCccccc-ceEEEEcceE
Q 011814 250 MGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRR-GYIHVVNNDF 315 (477)
Q Consensus 250 ~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~-G~vHvvNN~y 315 (477)
.....||+-+|+|.+...= .. ..+.-++-+.+|+| .+..+..=.+|. +++-+-||||
T Consensus 143 ~~~~~vT~hhN~f~~~~~R-----~P---~~r~G~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 143 DRGLRVTFHHNYFANTNSR-----NP---RVRFGYVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GTTEEEEEES-EEEEEEE------TT---EECSCEEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred cCCceEEEEeEEECchhhC-----CC---cccccEEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 1225999999999754321 10 11224688999999 456666666664 4788899987
No 51
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=94.48 E-value=0.77 Score=51.05 Aligned_cols=131 Identities=14% Similarity=0.206 Sum_probs=83.8
Q ss_pred hHHHHHh----CCCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVI----QPQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~----q~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G~------------g~i~i~~a~NVI 188 (477)
|+.+||. .+..++||+-..|+- ++.+.| .+|+||.|.|...+ |.+. +.+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 6667774 234466666555653 355666 47999999987643 3331 23445 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.+||+|++... . ..+-|+-+. .++++-+-+|.|....|=|++ .+..--..+|+|+..-.
T Consensus 321 a~nitf~Ntag--~---------------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~---~~~Rqyy~~C~I~GtVD 380 (541)
T PLN02416 321 ARDITIENTAG--P---------------EKHQAVALRVNADLVALYRCTINGYQDTLYV---HSFRQFYRECDIYGTID 380 (541)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCccEEEEcceEecccchhcc---CCCceEEEeeEEeeccc
Confidence 99999998521 0 122344443 478899999999998888874 24556677777775422
Q ss_pred EEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 268 VMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 268 ~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+++|.. .+-|.++.+
T Consensus 381 -FIFG~a---------~avfq~c~i 395 (541)
T PLN02416 381 -YIFGNA---------AVVFQACNI 395 (541)
T ss_pred -eeeccc---------eEEEeccEE
Confidence 355553 456666666
No 52
>PLN02916 pectinesterase family protein
Probab=94.47 E-value=1.2 Score=49.13 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=76.2
Q ss_pred hHHHHHhC-------CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEEe-cc------------eeEEEeeec
Q 011814 129 TLRYAVIQ-------PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHIT-GG------------GCITLQYIS 185 (477)
Q Consensus 129 sLR~Av~q-------~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I~-G~------------g~i~i~~a~ 185 (477)
|+.+||.. +..+++|+-..|+- ++.+.| .+|+||.|.|..-+|. +. +.+.+ .++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~ 277 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGVY--NEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGD 277 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECC
Confidence 67777732 23456666555653 355666 4689999998764333 21 12334 689
Q ss_pred cEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecc
Q 011814 186 NVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSH 264 (477)
Q Consensus 186 NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~ 264 (477)
+++.|||+|++... + ..+-|+-+. .++..-+.+|.|....|=|++- +..--..+|+|..
T Consensus 278 ~F~A~nitf~Ntag--~---------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~---~~Rqyy~~C~I~G 337 (502)
T PLN02916 278 GFWARDITFENTAG--P---------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH---SLRQFYRDCHIYG 337 (502)
T ss_pred CEEEEeeEEEeCCC--C---------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeC---CCCEEEEecEEec
Confidence 99999999998531 0 112344443 5788999999999988888752 3345566777764
Q ss_pred cceEEEecCC
Q 011814 265 HNEVMLLGHS 274 (477)
Q Consensus 265 h~k~mLiG~s 274 (477)
.-. +++|..
T Consensus 338 tVD-FIFG~a 346 (502)
T PLN02916 338 TID-FIFGDA 346 (502)
T ss_pred ccc-eeccCc
Confidence 322 345543
No 53
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.47 E-value=1.1 Score=49.81 Aligned_cols=121 Identities=14% Similarity=0.216 Sum_probs=76.9
Q ss_pred hHHHHHhC-----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEE-ecc------------eeEEEeeeccE
Q 011814 129 TLRYAVIQ-----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHI-TGG------------GCITLQYISNV 187 (477)
Q Consensus 129 sLR~Av~q-----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I-~G~------------g~i~i~~a~NV 187 (477)
|+.+||.. ...+++|+-..|+- ++.+.| .+|+||.|.|..-+| .+. +.+.+ .++++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v-~~~~F 315 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAA-MGDGF 315 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEE-EcCCe
Confidence 67778842 22356666566663 355666 579999999876443 321 23334 68999
Q ss_pred EEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccc
Q 011814 188 IIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHN 266 (477)
Q Consensus 188 IIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~ 266 (477)
+.|||+|++... + ..+-|+-+. .++.+.+.+|.|....|=|++ .+..--..+|++...-
T Consensus 316 ~a~nitf~Ntag--~---------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~---~~~Rqyy~~C~I~GtV 375 (529)
T PLN02170 316 IARDITFVNSAG--P---------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYT---HSKRQFYRETDITGTV 375 (529)
T ss_pred EEEeeEEEecCC--C---------------CCCceEEEEecCCcEEEEeeeEeccCCccee---CCCCEEEEeeEEcccc
Confidence 999999998521 0 112344443 478899999999998888875 2334555777776432
Q ss_pred eEEEecC
Q 011814 267 EVMLLGH 273 (477)
Q Consensus 267 k~mLiG~ 273 (477)
. +++|.
T Consensus 376 D-FIFG~ 381 (529)
T PLN02170 376 D-FIFGN 381 (529)
T ss_pred c-eeccc
Confidence 2 34554
No 54
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=94.44 E-value=1.3 Score=45.62 Aligned_cols=123 Identities=15% Similarity=0.238 Sum_probs=71.4
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEec---CCcEEeccCceE-EEecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIFN---SYKTLDGRGANV-HITGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V~---SnkTI~G~Ga~i-~I~G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. ...+++|+-..|+- ++.|.|. +++||.|.+..- .|.+. +.+.+ .+++++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGTY--REKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEEE--E--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCeeE--ccccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 66777742 33456666566653 3567773 699999998763 34432 13445 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceE
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEV 268 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~ 268 (477)
.+||+|++... . .....-|+.+ .++++.+.+|.|....|-|+. .....-+.+|++..+-.
T Consensus 91 ~~nit~~Nt~g--------------~-~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~---~~~r~y~~~c~IeG~vD- 150 (298)
T PF01095_consen 91 AENITFENTAG--------------P-SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYA---NGGRQYFKNCYIEGNVD- 150 (298)
T ss_dssp EEEEEEEEHCS--------------G-SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEESEE-
T ss_pred eeeeEEecCCC--------------C-cccceeeeee-cCCcEEEEEeEEccccceeee---ccceeEEEeeEEEecCc-
Confidence 99999998521 0 0112346666 468899999999999998874 24467778898886533
Q ss_pred EEecCC
Q 011814 269 MLLGHS 274 (477)
Q Consensus 269 mLiG~s 274 (477)
+++|..
T Consensus 151 FIfG~~ 156 (298)
T PF01095_consen 151 FIFGNG 156 (298)
T ss_dssp EEEESS
T ss_pred EEECCe
Confidence 466654
No 55
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=94.44 E-value=1 Score=50.65 Aligned_cols=131 Identities=11% Similarity=0.162 Sum_probs=83.3
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEE-ecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHI-TGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I-~G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. ...+++|+-..|+- ++.+.| .+|+||.|.|..-+| .+. +.+.+ .+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGIY--DETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCee--EEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEE
Confidence 67777743 23355555555553 355666 469999999876433 321 13344 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.+||+|++... + ..+-|+-+. .++.+-+.+|.|....|=|++ .+..--..+|++...-.
T Consensus 376 a~nitf~Ntag--~---------------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~---~~~Rqyy~~C~I~GtVD 435 (596)
T PLN02745 376 AKSMGFRNTAG--P---------------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYA---QTHRQFYRSCVITGTID 435 (596)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeeccccccc---CCCcEEEEeeEEEeecc
Confidence 99999998521 0 122344444 589999999999998888875 23455666777765433
Q ss_pred EEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 268 VMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 268 ~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+++|.. ++-|.+|.+
T Consensus 436 -FIFG~a---------~avf~~C~i 450 (596)
T PLN02745 436 -FIFGDA---------AAIFQNCLI 450 (596)
T ss_pred -EEecce---------eEEEEecEE
Confidence 456654 466666666
No 56
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.30 E-value=1.7 Score=48.26 Aligned_cols=131 Identities=13% Similarity=0.206 Sum_probs=83.0
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. +..++||+-..|+- ++.+.| .+|+||.|.|..-+ |.+. +.+.+ .+++++
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 322 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGFI 322 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCeE
Confidence 67777732 33456666555653 344555 47999999987633 3321 12333 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.+||+|++... . .++-++-+. .++++-+.+|.|....|=|++ .+..--..+|+|...-.
T Consensus 323 a~nit~~Ntag--~---------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~---~~~rqyy~~C~I~GtVD 382 (537)
T PLN02506 323 ARDITFRNTAG--P---------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYA---HSLRQFYRECEIYGTID 382 (537)
T ss_pred EEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEcceeeccccccee---cCCceEEEeeEEecccc
Confidence 99999998521 0 122344443 489999999999999888875 23445667777775422
Q ss_pred EEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 268 VMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 268 ~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+++|.. .+-|.+|.+
T Consensus 383 -FIFG~a---------~avfq~C~i 397 (537)
T PLN02506 383 -FIFGNG---------AAVLQNCKI 397 (537)
T ss_pred -eEccCc---------eeEEeccEE
Confidence 355654 466666666
No 57
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=93.98 E-value=0.25 Score=53.21 Aligned_cols=79 Identities=24% Similarity=0.251 Sum_probs=33.8
Q ss_pred ccEEEEeeeeecCC--CCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCc--Ccccc
Q 011814 229 KDLWIDHCSLSHCK--DGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQR--MPRCR 304 (477)
Q Consensus 229 ~nVWIDHcs~s~~~--DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR--~PrvR 304 (477)
.+.-|.||-|..|. -|+|++ .|..-||.+|.|.+..-.+-+=|. -..|+..|+|- +...+ .+-+|
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISv--KS~~N~ir~Ntf~es~G~ltlRHG--------n~n~V~gN~Fi-Gng~~~~tGGIR 267 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISV--KSSDNTIRNNTFRESQGSLTLRHG--------NRNTVEGNVFI-GNGVKEGTGGIR 267 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEE--ESBT-EEES-EEES-SSEEEEEE---------SS-EEES-EEE-E-SSSS-B--EE
T ss_pred cceeeecchhhhcCCceeEEEe--ecCCceEeccEEEeccceEEEecC--------CCceEeccEEe-cCCCcCCCCceE
Confidence 55666666666652 334433 355666777777665544333332 24677777774 22222 33444
Q ss_pred -cceEE-EEcceEeCC
Q 011814 305 -RGYIH-VVNNDFTEW 318 (477)
Q Consensus 305 -~G~vH-vvNN~y~nw 318 (477)
+|.-| |+|||+++-
T Consensus 268 Ii~~~H~I~nNY~~gl 283 (425)
T PF14592_consen 268 IIGEGHTIYNNYFEGL 283 (425)
T ss_dssp E-SBS-EEES-EEEES
T ss_pred EecCCcEEEcceeecc
Confidence 35444 777777754
No 58
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=93.84 E-value=1.4 Score=48.88 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=79.4
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. +..+++|+-..|+-+ +.+.| .+|+||.|.|..-+ |.+. +.+.+ .+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEE
Confidence 55666632 222444444444433 45566 56899999987633 3321 23344 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.+||+|++... + ..+-|+-+. .++++-+.+|.|....|=|++ .+..--..+|+|..+-.
T Consensus 309 a~nitf~Ntag--~---------------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~---~~~Rqyy~~C~IeGtVD 368 (530)
T PLN02933 309 AKDISFVNYAG--P---------------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYV---HSAKQFYRECDIYGTID 368 (530)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEEeEEEeccccccc---CCCceEEEeeEEecccc
Confidence 99999998431 0 123455554 589999999999998888875 23345667777775422
Q ss_pred EEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 268 VMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 268 ~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+++|.. ++-|.+|.+
T Consensus 369 -FIFG~a---------~avFq~C~i 383 (530)
T PLN02933 369 -FIFGNA---------AVVFQNCSL 383 (530)
T ss_pred -eeccCc---------eEEEeccEE
Confidence 345543 355555555
No 59
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=93.83 E-value=1.6 Score=48.52 Aligned_cols=131 Identities=12% Similarity=0.191 Sum_probs=81.5
Q ss_pred hHHHHHhC----C---CCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eecc------------eeEEEeeec
Q 011814 129 TLRYAVIQ----P---QPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITGG------------GCITLQYIS 185 (477)
Q Consensus 129 sLR~Av~q----~---~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G~------------g~i~i~~a~ 185 (477)
|+.+||.. . .-++||+-..|+- ++.|.| ..|+||.|.|..-+ |.+. +.+.+ .++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~ 313 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGE 313 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECC
Confidence 67777742 1 1256666666663 355666 57999999987643 3321 23444 689
Q ss_pred cEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecc
Q 011814 186 NVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSH 264 (477)
Q Consensus 186 NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~ 264 (477)
++|.+||+|++.. |+ ...-|+-+. .++..-+.+|.|....|=|++ .+..--..+|++..
T Consensus 314 ~F~a~~it~~Nta--g~---------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~---~~~rq~y~~c~I~G 373 (538)
T PLN03043 314 RFVAVDVTFRNTA--GP---------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYV---HSLRQFYRECDIYG 373 (538)
T ss_pred CEEEEeeEEEECC--CC---------------CCCceEEEEEcCCcEEEEeeEEeccCccccc---CCCcEEEEeeEEee
Confidence 9999999999852 11 123455554 578899999999988887764 23345556666664
Q ss_pred cceEEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 265 HNEVMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 265 h~k~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+-. +++|.. .+-|.+|.+
T Consensus 374 tVD-FIFG~a---------~avfq~c~i 391 (538)
T PLN03043 374 TVD-FIFGNA---------AAIFQNCNL 391 (538)
T ss_pred ccc-eEeecc---------eeeeeccEE
Confidence 322 345543 455566655
No 60
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=93.78 E-value=1.5 Score=48.94 Aligned_cols=122 Identities=16% Similarity=0.317 Sum_probs=76.8
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEE-ecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHI-TGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I-~G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. ...++||+-..|+ .++.+.| .+|+||.|.|...+| .+. +.+.+ .+++++
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~~~~F~ 326 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAA-VGDGFI 326 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEE-ECCceE
Confidence 67777742 3345666656666 3455666 479999999876443 221 12333 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.+||+|++.. |+ ...-|+-+. .++++-+.+|.|....|=|++ .+..--..+|++...-.
T Consensus 327 a~nitf~Nta--g~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~---~~~Rqyy~~C~I~GtVD 386 (548)
T PLN02301 327 AQDIWFQNTA--GP---------------EKHQAVALRVSADQAVINRCRIDAYQDTLYA---HSLRQFYRDSYITGTVD 386 (548)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEecCCcEEEEeeeeeecccccee---cCCcEEEEeeEEEeccc
Confidence 9999999852 11 112344443 478999999999998888874 23445666777764322
Q ss_pred EEEecCC
Q 011814 268 VMLLGHS 274 (477)
Q Consensus 268 ~mLiG~s 274 (477)
+++|..
T Consensus 387 -FIFG~a 392 (548)
T PLN02301 387 -FIFGNA 392 (548)
T ss_pred -eecccc
Confidence 345543
No 61
>PLN02314 pectinesterase
Probab=93.75 E-value=1.4 Score=49.38 Aligned_cols=121 Identities=13% Similarity=0.219 Sum_probs=75.2
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEE-ecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHI-TGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I-~G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. +..++||+-..|+- ++.+.| ..|+|+.|.|..-+| .+. +.+.+ .+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGTY--VENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCceE--EEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeE
Confidence 67777732 33456666555653 345556 468999999876333 321 12334 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.|||+|++... ....-|+-++ +++..-+.+|.|....|=|++ .+..--..+|++..+-.
T Consensus 369 a~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~---~~~rq~y~~C~I~GtvD 428 (586)
T PLN02314 369 AKDMGFINTAG-----------------AAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA---HSNRQFYRDCDITGTID 428 (586)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeEEEeccchhee---CCCCEEEEeeEEEeccc
Confidence 99999998521 1123455554 588899999999988887774 23344556666664322
Q ss_pred EEEecC
Q 011814 268 VMLLGH 273 (477)
Q Consensus 268 ~mLiG~ 273 (477)
+++|.
T Consensus 429 -FIFG~ 433 (586)
T PLN02314 429 -FIFGN 433 (586)
T ss_pred -eeccC
Confidence 34454
No 62
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=93.74 E-value=1.8 Score=48.59 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=78.9
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eecc-------------eeEEEeeeccE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITGG-------------GCITLQYISNV 187 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G~-------------g~i~i~~a~NV 187 (477)
|+.+||.. +..++||+-..|+- ++.+.| .+|+||.|.|..-+ |.+. +.+.+ .++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F 349 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHF 349 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCE
Confidence 66777732 22345555444542 355666 47999999987533 3321 12333 68999
Q ss_pred EEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccc
Q 011814 188 IIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHN 266 (477)
Q Consensus 188 IIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~ 266 (477)
+.|||+|++... ...+-|+-+. .++..-+.+|.|....|=|++ .+..--..+|++...-
T Consensus 350 ~a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~---~~~Rqyy~~C~I~GtV 409 (572)
T PLN02990 350 TAKNIGFENTAG-----------------PEGHQAVALRVSADYAVFYNCQIDGYQDTLYV---HSHRQFFRDCTVSGTV 409 (572)
T ss_pred EEEeeEEEeCCC-----------------CCCCceEEEEEcCCcEEEEeeeEecccchhcc---CCCcEEEEeeEEeccc
Confidence 999999998531 1123455554 588899999999988887774 2334455666665432
Q ss_pred eEEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 267 EVMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 267 k~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
. +++|.. ++-|.+|.+
T Consensus 410 D-FIFG~a---------~avf~~C~i 425 (572)
T PLN02990 410 D-FIFGDA---------KVVLQNCNI 425 (572)
T ss_pred c-eEccCc---------eEEEEccEE
Confidence 2 244443 455555555
No 63
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=93.71 E-value=1.8 Score=48.71 Aligned_cols=131 Identities=14% Similarity=0.202 Sum_probs=80.0
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecc-eEEe---cCCcEEeccCceEE-Eecc------------eeEEEeeeccE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQ-ELIF---NSYKTLDGRGANVH-ITGG------------GCITLQYISNV 187 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~-~L~V---~SnkTI~G~Ga~i~-I~G~------------g~i~i~~a~NV 187 (477)
|+.+||.. +..++||+-..|+-+ + .+.| .+|+||.|.|..-+ |.+. +.+.+ .++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~F 362 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAGF 362 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCCE
Confidence 56667632 233555555555532 3 3666 47999999987643 3331 12333 68999
Q ss_pred EEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccc
Q 011814 188 IIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHN 266 (477)
Q Consensus 188 IIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~ 266 (477)
+.|||+|++... + ..+-|+-+. .+++.-+.+|.|....|=|++ .+..--..+|+|..+-
T Consensus 363 ~a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~---~~~Rqyy~~C~I~GtV 422 (587)
T PLN02484 363 IARDMTFENWAG--P---------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYV---HSNRQFFRECDIYGTV 422 (587)
T ss_pred EEEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeeEeccCccccc---CCCcEEEEecEEEecc
Confidence 999999998521 0 122355544 588999999999988888875 2334556677766432
Q ss_pred eEEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 267 EVMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 267 k~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
. +++|.. ++-|.+|.+
T Consensus 423 D-FIFG~a---------~avfq~C~i 438 (587)
T PLN02484 423 D-FIFGNA---------AVVLQNCSI 438 (587)
T ss_pred c-eecccc---------eeEEeccEE
Confidence 2 345543 355555555
No 64
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=93.65 E-value=1.6 Score=48.64 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=77.2
Q ss_pred hHHHHHhC------CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eecc------------eeEEEeeecc
Q 011814 129 TLRYAVIQ------PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITGG------------GCITLQYISN 186 (477)
Q Consensus 129 sLR~Av~q------~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G~------------g~i~i~~a~N 186 (477)
|..+||.. +..+++|+-..|+- ++.+.| .+|+|+.|.|..-+ |.+. +.+.+ .+++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~ 313 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLH 313 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCC
Confidence 67777742 12255555444553 345566 47999999987633 4321 12334 6899
Q ss_pred EEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceeccc
Q 011814 187 VIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHH 265 (477)
Q Consensus 187 VIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h 265 (477)
++.+||+|++... ...+-|+-+. .++...+.+|.|....|=|++ .+..--..+|++...
T Consensus 314 F~a~nitf~Ntag-----------------~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~---~~~Rqyy~~C~I~Gt 373 (539)
T PLN02995 314 FIAKGITFRNTAG-----------------PAKGQAVALRSSSDLSIFYKCSIEGYQDTLMV---HSQRQFYRECYIYGT 373 (539)
T ss_pred eEEEeeEEEeCCC-----------------CCCCceEEEEEcCCceeEEcceEecccchhcc---CCCceEEEeeEEeec
Confidence 9999999998521 0123455554 589999999999999888875 233456667777654
Q ss_pred ceEEEecCC
Q 011814 266 NEVMLLGHS 274 (477)
Q Consensus 266 ~k~mLiG~s 274 (477)
-. +++|..
T Consensus 374 VD-FIFG~a 381 (539)
T PLN02995 374 VD-FIFGNA 381 (539)
T ss_pred cc-eEeccc
Confidence 22 355553
No 65
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=93.50 E-value=2 Score=48.06 Aligned_cols=131 Identities=16% Similarity=0.237 Sum_probs=80.8
Q ss_pred hHHHHHhC-------CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEE-Eecc------------eeEEEeeec
Q 011814 129 TLRYAVIQ-------PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVH-ITGG------------GCITLQYIS 185 (477)
Q Consensus 129 sLR~Av~q-------~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~-I~G~------------g~i~i~~a~ 185 (477)
|..+||.. ...++||+-..|+- ++.+.| .+|+||.|.|..-+ |.+. +.+.+ .++
T Consensus 264 TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~ 340 (566)
T PLN02713 264 TINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQ 340 (566)
T ss_pred CHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECC
Confidence 66667632 12245555555553 355666 57899999987633 3321 23444 689
Q ss_pred cEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecc
Q 011814 186 NVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSH 264 (477)
Q Consensus 186 NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~ 264 (477)
+++.+||+|++... + ..+-|+-+. .++..-+.+|.|....|=|++ .+..--..+|+|..
T Consensus 341 ~F~a~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~---~~~Rqyy~~C~I~G 400 (566)
T PLN02713 341 NFVAVNITFRNTAG--P---------------AKHQAVALRSGADLSTFYSCSFEAYQDTLYT---HSLRQFYRECDIYG 400 (566)
T ss_pred CeEEEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEeeeeccCCcceEE---CCCCEEEEeeEEec
Confidence 99999999998521 0 123355544 578899999999998888875 23445666777764
Q ss_pred cceEEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 265 HNEVMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 265 h~k~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
.-. +++|.. .+-|.+|.+
T Consensus 401 tVD-FIFG~a---------~avfq~C~i 418 (566)
T PLN02713 401 TVD-FIFGNA---------AVVFQNCNL 418 (566)
T ss_pred ccc-eecccc---------eEEEeccEE
Confidence 322 345543 455666655
No 66
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=93.32 E-value=2.4 Score=46.80 Aligned_cols=131 Identities=14% Similarity=0.248 Sum_probs=81.7
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEE-ecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHI-TGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I-~G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. +..+++|+=..|+ .++.+.| .+|+||.|.|..-+| .+. +.+.+ .++++|
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~ 287 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFI 287 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeE
Confidence 67777732 2335555545554 3455666 479999999886443 321 12333 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.+||+|++.. |+ ..+-|+-+. .++..-+.+|.|....|=|++ .+..--..+|+|...-.
T Consensus 288 A~nitf~Nta--g~---------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~---~~~RqyyrdC~I~GtVD 347 (509)
T PLN02488 288 GIDMCFRNTA--GP---------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYP---HRDRQFYRECFITGTVD 347 (509)
T ss_pred EEeeEEEECC--CC---------------CCCceEEEEecCCcEEEEcceeeccCcceee---CCCCEEEEeeEEeeccc
Confidence 9999999842 11 123466655 589999999999988888874 23445566666664322
Q ss_pred EEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 268 VMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 268 ~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+++|.. .+-|.+|.+
T Consensus 348 -FIFG~a---------~avFq~C~I 362 (509)
T PLN02488 348 -FICGNA---------AAVFQFCQI 362 (509)
T ss_pred -eEecce---------EEEEEccEE
Confidence 344543 455666655
No 67
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=92.43 E-value=1.4 Score=49.51 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=61.9
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEE-ecc------------eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHI-TGG------------GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I-~G~------------g~i~i~~a~NVI 188 (477)
|+.+||.. +..++||+-..|+ .++.+.| ..|+||.|.|..-+| .+. +.+.+ .+++++
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~ 365 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFL 365 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeE
Confidence 66677632 2335555555554 3355666 469999999876433 321 22333 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeE
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLI 246 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGli 246 (477)
.|||+|++... + ...-|+-+. +++..-+.+|.|....|=|+
T Consensus 366 a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy 407 (587)
T PLN02313 366 ARDITFQNTAG--P---------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLY 407 (587)
T ss_pred EEeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEeeeEecccchhc
Confidence 99999998531 1 122344444 57889999999987766665
No 68
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=92.39 E-value=5.6 Score=43.11 Aligned_cols=87 Identities=10% Similarity=0.227 Sum_probs=55.6
Q ss_pred eeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeee---------CC
Q 011814 183 YISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVM---------GS 252 (477)
Q Consensus 183 ~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~---------gS 252 (477)
.+++++.+||+|++....+. ....+-++-+. .++.+-+.+|.|--..|=|+.-.. ..
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~ 270 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQ 270 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceeeecccccccccccccc
Confidence 68999999999998642110 01122344444 578999999999999998885211 12
Q ss_pred CeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 253 TGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 253 t~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
..--+.+|+|+..-. +++|.. ++-|.++.+
T Consensus 271 gRqYf~~CyIeG~VD-FIFG~g---------~AvFenC~I 300 (422)
T PRK10531 271 PRTYVKNSYIEGDVD-FVFGRG---------AVVFDNTEF 300 (422)
T ss_pred ccEEEEeCEEeeccc-EEccCc---------eEEEEcCEE
Confidence 246667777775422 355553 466777776
No 69
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.36 E-value=0.23 Score=36.12 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=36.6
Q ss_pred cEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceeccc
Q 011814 222 GISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHH 265 (477)
Q Consensus 222 aI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h 265 (477)
||.++.+++..|..|.++..+||+. ...+.+.+|..|.+.+.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~--~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIY--LTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEE--EEeCCCCEeECCEEEcC
Confidence 6889999999999999999999886 57788999999988753
No 70
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.60 E-value=3.4 Score=46.31 Aligned_cols=131 Identities=10% Similarity=0.171 Sum_probs=79.2
Q ss_pred hHHHHHhC----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEE-ec-------c-----eeEEEeeeccEE
Q 011814 129 TLRYAVIQ----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHI-TG-------G-----GCITLQYISNVI 188 (477)
Q Consensus 129 sLR~Av~q----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I-~G-------~-----g~i~i~~a~NVI 188 (477)
|..+||.. +..+.||+-..|+- ++.+.| ..|+||.|.|..-+| .+ . +.+.+ .+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~GvY--~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGVY--FENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCce--EEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeE
Confidence 66666632 22344444444543 355666 468999999876333 21 1 12334 689999
Q ss_pred EEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 189 IHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 189 IRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
.|||+|++... ....-|+-+. .++.+-+.+|.|....|=|++ + +..--..+|++...-.
T Consensus 349 a~~itf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~--~-~~rq~y~~C~I~GtvD 408 (565)
T PLN02468 349 ARDMGFRNTAG-----------------PIKHQAVALMSSADLSVFYRCTMDAFQDTLYA--H-AQRQFYRECNIYGTVD 408 (565)
T ss_pred EEEEEEEeCCC-----------------CCCCceEEEEEcCCcEEEEEeEEEeccchhcc--C-CCceEEEeeEEecccc
Confidence 99999998521 1123455554 588999999999988887774 2 3344566777764322
Q ss_pred EEEecCCCCCCCCCCcEEEEEeeEE
Q 011814 268 VMLLGHSDDYLPDSGMQVTIAFNHF 292 (477)
Q Consensus 268 ~mLiG~sd~~~~D~g~~VTihhN~F 292 (477)
+++|.. .+-|.+|.+
T Consensus 409 -FIFG~a---------~avfq~c~i 423 (565)
T PLN02468 409 -FIFGNS---------AVVFQNCNI 423 (565)
T ss_pred -eeeccc---------eEEEeccEE
Confidence 345543 455666655
No 71
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=91.48 E-value=4.7 Score=45.09 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=69.8
Q ss_pred hHHHHHhC-----CCCeEEEEccceEEeecceEEe---cCCcEEeccCceEEEe-cc-------------eeEEEeeecc
Q 011814 129 TLRYAVIQ-----PQPLWIVFPSNMLIKLSQELIF---NSYKTLDGRGANVHIT-GG-------------GCITLQYISN 186 (477)
Q Consensus 129 sLR~Av~q-----~~P~~IvF~~~g~I~l~~~L~V---~SnkTI~G~Ga~i~I~-G~-------------g~i~i~~a~N 186 (477)
|+.+||.. .+.+.||+-..|+- ++.+.| ..|+||.|.|..-+|. +. +.+.+ .+++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY--~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~ 331 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVY--EETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDG 331 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceE--EeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCC
Confidence 66666632 12345555555553 344555 5799999998764333 21 22334 6899
Q ss_pred EEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecc
Q 011814 187 VIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSH 264 (477)
Q Consensus 187 VIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~ 264 (477)
++.+||+|++.. |+ ..+-|+-+. .++.+-+.+|.|....|=|+. .+..--..+|+|..
T Consensus 332 f~a~~it~~Nta--g~---------------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~---~~~rq~y~~C~I~G 390 (553)
T PLN02708 332 FMARDLTIQNTA--GP---------------DAHQAVAFRSDSDLSVIENCEFLGNQDTLYA---HSLRQFYKSCRIQG 390 (553)
T ss_pred eEEEeeEEEcCC--CC---------------CCCceEEEEecCCcEEEEeeeeeecccccee---CCCceEEEeeEEee
Confidence 999999999842 11 123455554 588999999999988777764 12334455666654
No 72
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=90.91 E-value=4.7 Score=39.24 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=44.4
Q ss_pred CCccEEEEeeeeecCC--------CCeEEeeeCCCeEEEEcceecccceE---EEecCCCCCCCCCCcEEEEEeeEECCC
Q 011814 227 GSKDLWIDHCSLSHCK--------DGLIDAVMGSTGITISNNYFSHHNEV---MLLGHSDDYLPDSGMQVTIAFNHFGEK 295 (477)
Q Consensus 227 gs~nVWIDHcs~s~~~--------DGliDv~~gSt~VTISnn~f~~h~k~---mLiG~sd~~~~D~g~~VTihhN~F~~n 295 (477)
.+++|+|.||.|..+. .|++ ..|-.+..|.||.|...... .+.-..+......+...++.+|.+. |
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv--~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~-N 108 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIV--TSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIV-N 108 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEE--eccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEe-e
Confidence 3679999999999863 3443 45667889999999964432 1111111112234466777888884 6
Q ss_pred CcCc
Q 011814 296 LVQR 299 (477)
Q Consensus 296 ~~qR 299 (477)
+.+|
T Consensus 109 T~~r 112 (198)
T PF08480_consen 109 TRKR 112 (198)
T ss_pred eeec
Confidence 7766
No 73
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=90.18 E-value=1.3 Score=49.19 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=82.8
Q ss_pred CCCeEEEEccceEEeec------ce---E-Ee-cCCcEEeccCceE-EEecceeEEEeeeccEEEEeeEEEeeeccCCce
Q 011814 137 PQPLWIVFPSNMLIKLS------QE---L-IF-NSYKTLDGRGANV-HITGGGCITLQYISNVIIHNIHIHHCVESGNAN 204 (477)
Q Consensus 137 ~~P~~IvF~~~g~I~l~------~~---L-~V-~SnkTI~G~Ga~i-~I~G~g~i~i~~a~NVIIRnL~I~~~~~~g~~~ 204 (477)
..|+.|.|...-.+.+. .+ + .+ .+|+||.+..-+. +..+.-.|.+..++||.|.+.+|.. |+-.
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt----gDD~ 311 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT----GDDC 311 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec----CCce
Confidence 57899998876555442 11 1 11 4566666652210 1112223788889999999999974 1111
Q ss_pred eccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEee---eCCCeEEEEcceecccceEEEecCCCCCCCC
Q 011814 205 VRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAV---MGSTGITISNNYFSHHNEVMLLGHSDDYLPD 280 (477)
Q Consensus 205 i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~---~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D 280 (477)
|.-. .....|+-... -+++|||-||.|+..+-++..-. .+..+|++.+|.|.+.+...=|...+... .
T Consensus 312 I~ik-------sg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G 383 (542)
T COG5434 312 IAIK-------SGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-G 383 (542)
T ss_pred EEee-------cccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-e
Confidence 1100 00011111111 26899999999999888776533 35689999999999866654454443221 0
Q ss_pred CCcEEEEEeeEE
Q 011814 281 SGMQVTIAFNHF 292 (477)
Q Consensus 281 ~g~~VTihhN~F 292 (477)
.-.+++|+.|.-
T Consensus 384 ~v~nI~~~~~~~ 395 (542)
T COG5434 384 GVRNIVFEDNKM 395 (542)
T ss_pred eEEEEEEecccc
Confidence 114566665554
No 74
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=87.63 E-value=3.7 Score=41.42 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=54.9
Q ss_pred cCCcEEeccCceE-EE-ecceeEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeC------Ccc
Q 011814 159 NSYKTLDGRGANV-HI-TGGGCITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFG------SKD 230 (477)
Q Consensus 159 ~SnkTI~G~Ga~i-~I-~G~g~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~g------s~n 230 (477)
.++.+|.|..-.. .+ .|.| |.|..+ +..|+|.+|+++. .+||.+.+ ..+
T Consensus 96 ~~~~~i~GvtItN~n~~~g~G-i~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~ 152 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTG-IWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGING 152 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceE-EEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccc
Confidence 6677777753211 11 3444 888655 9999999999752 24555543 346
Q ss_pred EEEEeeeeecCCCCeEEeeeCC--CeEEEEcceecccceE
Q 011814 231 LWIDHCSLSHCKDGLIDAVMGS--TGITISNNYFSHHNEV 268 (477)
Q Consensus 231 VWIDHcs~s~~~DGliDv~~gS--t~VTISnn~f~~h~k~ 268 (477)
+.|..|++..+..|+. +...+ ...+|.||+|++....
T Consensus 153 ~vI~GN~~~~~~~Gi~-i~~~~~~~~n~I~NN~I~~N~~G 191 (246)
T PF07602_consen 153 NVISGNSIYFNKTGIS-ISDNAAPVENKIENNIIENNNIG 191 (246)
T ss_pred eEeecceEEecCcCeE-EEcccCCccceeeccEEEeCCcC
Confidence 7788888888887873 22112 2248899999986553
No 75
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=82.87 E-value=6.9 Score=38.10 Aligned_cols=88 Identities=25% Similarity=0.209 Sum_probs=59.1
Q ss_pred CeEEEEcceecccc--eEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCccccc--c-------eEEEEcceEeCCc--
Q 011814 253 TGITISNNYFSHHN--EVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRR--G-------YIHVVNNDFTEWE-- 319 (477)
Q Consensus 253 t~VTISnn~f~~h~--k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~--G-------~vHvvNN~y~nw~-- 319 (477)
++|.|=||.+.+-. -.-|+|...+|..+....|.+|||.|- ....+|...+ | ..-+.||+|...-
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY--~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFY--DTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEee--cCCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 57888899888644 346888877777776679999999995 3566666553 3 2358999998643
Q ss_pred ----ceEee----cCCCceEEeeCcEEeCCC
Q 011814 320 ----MYAIG----GSGNPTINSQGNRYTAPT 342 (477)
Q Consensus 320 ----~Yaig----~s~~~~I~segN~F~~~~ 342 (477)
+|..+ .+.+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 23332 113445667788877643
No 76
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=79.39 E-value=10 Score=37.64 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=34.1
Q ss_pred ccCCCCcEEeeCCc-cEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccce
Q 011814 216 TKSDGDGISIFGSK-DLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNE 267 (477)
Q Consensus 216 ~~sdgDaI~I~gs~-nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k 267 (477)
..-..||+++.+.. .+.|....+....|-.|- ..+.-.++|++-+..++.|
T Consensus 92 edVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q-~Ng~Gtv~I~nF~a~d~GK 143 (215)
T PF03211_consen 92 EDVCEDAATFKGDGGTVTIIGGGARNASDKVFQ-HNGGGTVTIKNFYAEDFGK 143 (215)
T ss_dssp SS-SSESEEEESSEEEEEEESTEEEEEEEEEEE-E-SSEEEEEEEEEEEEEEE
T ss_pred cccceeeeEEcCCCceEEEeCCcccCCCccEEE-ecCceeEEEEeEEEcCCCE
Confidence 34466888887766 788888888888887775 3455667777755555544
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=71.66 E-value=8.8 Score=27.68 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=33.9
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecC
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHC 241 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~ 241 (477)
|.+..+++..|++-+|.+. .|||.+..+++.-|..|.++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~----------------------~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNN----------------------SYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred EEEEecCCCEEECcEEeCC----------------------CCEEEEEeCCCCEeECCEEEcC
Confidence 6777888888988888863 3599999999999999988764
No 78
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=58.93 E-value=97 Score=31.94 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCccEEEEeeeeecCCCCeEEeeeCCCeEEEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEECCCCcCcCcccccc
Q 011814 227 GSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRG 306 (477)
Q Consensus 227 gs~nVWIDHcs~s~~~DGliDv~~gSt~VTISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~~n~~qR~PrvR~G 306 (477)
+++||-|.|+.|-.- |+...+.+|||-++.+..- . +|... .++|+.++.. .+ -.|.|---
T Consensus 154 ~~kNvei~ns~l~sK-----DAFWn~eNVtVyDS~i~GE--Y--LgW~S-------kNltliNC~I-~g---~QpLCY~~ 213 (277)
T PF12541_consen 154 YCKNVEIHNSKLDSK-----DAFWNCENVTVYDSVINGE--Y--LGWNS-------KNLTLINCTI-EG---TQPLCYCD 213 (277)
T ss_pred ceeeEEEEccEEecc-----cccccCCceEEEcceEeee--E--EEEEc-------CCeEEEEeEE-ec---cCccEeec
Confidence 455555555555322 3334566777777666532 1 12221 3699999988 33 55887555
Q ss_pred eEEEEcceEeC
Q 011814 307 YIHVVNNDFTE 317 (477)
Q Consensus 307 ~vHvvNN~y~n 317 (477)
.+.+.|+.+.+
T Consensus 214 ~L~l~nC~~~~ 224 (277)
T PF12541_consen 214 NLVLENCTMID 224 (277)
T ss_pred ceEEeCcEeec
Confidence 67788888874
No 79
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=55.56 E-value=42 Score=34.51 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=12.0
Q ss_pred EeeeccEEEEeeEEEe
Q 011814 181 LQYISNVIIHNIHIHH 196 (477)
Q Consensus 181 i~~a~NVIIRnL~I~~ 196 (477)
+.+++|..|.|.+|.+
T Consensus 15 Lf~~~d~~l~~~~f~d 30 (277)
T PF12541_consen 15 LFGSHDLRLENCTFAD 30 (277)
T ss_pred ccccCCCEEEeeEEeC
Confidence 3467888888888876
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=49.92 E-value=3e+02 Score=29.81 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=52.7
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccc---cCCCCcEEeeCCccEEEEeeeeecCCCCeEEeeeCCCeE
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRT---KSDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGI 255 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~---~sdgDaI~I~gs~nVWIDHcs~s~~~DGliDv~~gSt~V 255 (477)
+.+....+++||+..|.+.. +-+ ++.... .-.|+ ..-.-||.-.+...+-|.+|.|..|.=|++. ....
T Consensus 139 ~~f~~~t~~~~hgC~F~gf~--g~c-l~~~~~-~~VrGC~F~~C~~gi~~~~~~~lsVk~C~FekC~igi~s----~G~~ 210 (386)
T PF01696_consen 139 VVFHANTNTLFHGCSFFGFH--GTC-LESWAG-GEVRGCTFYGCWKGIVSRGKSKLSVKKCVFEKCVIGIVS----EGPA 210 (386)
T ss_pred eEEEecceEEEEeeEEecCc--cee-EEEcCC-cEEeeeEEEEEEEEeecCCcceEEeeheeeeheEEEEEe----cCCe
Confidence 44556788888888887642 111 111000 00000 0011233333456777788888888777642 3477
Q ss_pred EEEcceecccceEEEecCCCCCCCCCCcEEEEEeeEEC
Q 011814 256 TISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFG 293 (477)
Q Consensus 256 TISnn~f~~h~k~mLiG~sd~~~~D~g~~VTihhN~F~ 293 (477)
+|++|-+.+..=..|++. .-++.||.|-
T Consensus 211 ~i~hn~~~ec~Cf~l~~g----------~g~i~~N~v~ 238 (386)
T PF01696_consen 211 RIRHNCASECGCFVLMKG----------TGSIKHNMVC 238 (386)
T ss_pred EEecceecccceEEEEcc----------cEEEeccEEe
Confidence 888888887654444433 2566777774
No 81
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=49.43 E-value=29 Score=36.32 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=36.0
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecCCC
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHCKD 243 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~~D 243 (477)
+.+.+.++.||||++-+++.|. +.....-|.-.+.|+|++|..||...+-++.-
T Consensus 262 vhvengkhfvirnvkaknitpd-----------fskkagidnatvaiygcdnfvidni~mvnsag 315 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKNITPD-----------FSKKAGIDNATVAIYGCDNFVIDNIEMINSAG 315 (464)
T ss_pred EEecCCcEEEEEeeeccccCCC-----------chhhcCCCcceEEEEcccceEEeccccccccc
Confidence 4456778888888888876541 11111124445778899999999888877643
No 82
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=25.07 E-value=4.5e+02 Score=29.37 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=46.6
Q ss_pred eEEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEee-CCccEEEEeeeeecCCCCeEEeeeCCCeEE
Q 011814 178 CITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIF-GSKDLWIDHCSLSHCKDGLIDAVMGSTGIT 256 (477)
Q Consensus 178 ~i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~-gs~nVWIDHcs~s~~~DGliDv~~gSt~VT 256 (477)
.+.+ .+++++.|||+|++... + .+.-|+-+. .++++-+.+|.|....|=|++ .+..--
T Consensus 264 T~~v-~~~~F~a~nitf~Ntag--~---------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~---~~~rqy 322 (497)
T PLN02698 264 TFTI-TGDGFIARDIGFKNAAG--P---------------KGEQAIALSITSDHSVLYRCSIAGYQDTLYA---AALRQF 322 (497)
T ss_pred eEEE-ECCCeEEEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEcceeecccchhee---CCCcEE
Confidence 4555 68999999999998521 0 112344443 478899999999888887774 123345
Q ss_pred EEcceecccceEEEecCC
Q 011814 257 ISNNYFSHHNEVMLLGHS 274 (477)
Q Consensus 257 ISnn~f~~h~k~mLiG~s 274 (477)
..+|+|...-. +++|..
T Consensus 323 y~~C~I~G~vD-FIFG~a 339 (497)
T PLN02698 323 YRECDIYGTID-FIFGNA 339 (497)
T ss_pred EEeeEEEeccc-eEeccc
Confidence 55666653321 345543
No 83
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=21.73 E-value=5e+02 Score=21.98 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=39.3
Q ss_pred EEEeeeccEEEEeeEEEeeeccCCceeccCCCcccccccCCCCcEEeeCCccEEEEeeeeecC----CCCeEEeeeCCCe
Q 011814 179 ITLQYISNVIIHNIHIHHCVESGNANVRSSPTHYGYRTKSDGDGISIFGSKDLWIDHCSLSHC----KDGLIDAVMGSTG 254 (477)
Q Consensus 179 i~i~~a~NVIIRnL~I~~~~~~g~~~i~~sp~~~g~r~~sdgDaI~I~gs~nVWIDHcs~s~~----~DGliDv~~gSt~ 254 (477)
+.+ .+.+|.++++.++.+...| ........++. .++++..|.+|.+... ..|+. + ..+..
T Consensus 40 ~~i-~~~~~~~~G~~~~~~~~~G------------~~~~~~~~~~~-~~~~~~~i~~N~~~~~~~~~~~Gi~-~-~~~~~ 103 (146)
T smart00722 40 ITI-NSNDVRVDGITIGGSTVTG------------IYVSASGDGVI-QNTGKNLIIDNVTINGTEGSGAGIV-V-TAGSE 103 (146)
T ss_pred EEE-eCCCCEEECeEEEeEEeeC------------cccccCCceEe-cCccccEEEcceecCCCccceEEEE-E-ECCcc
Confidence 445 3667778888887631011 11122344555 6778888888888776 55654 2 33444
Q ss_pred EEEEcceec
Q 011814 255 ITISNNYFS 263 (477)
Q Consensus 255 VTISnn~f~ 263 (477)
.++.+|.+.
T Consensus 104 ~~~~~N~i~ 112 (146)
T smart00722 104 GLFIGNRII 112 (146)
T ss_pred ceEecCeEE
Confidence 446666655
Done!