BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011816
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/427 (51%), Positives = 287/427 (67%), Gaps = 2/427 (0%)
Query: 48 SVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQ 107
S+ GY L R+P NK LAFT +ER + GLLPP+ SQ++Q +++ +
Sbjct: 22 SMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFD 81
Query: 108 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK 167
+Y+ +M+L++RNE+LFY++L ++E+ +P+VYTPTVG ACQ+Y +FR+P+GL+I++ ++
Sbjct: 82 RYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDR 141
Query: 168 GKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLP 227
G I VL WPE I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P CLP
Sbjct: 142 GHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLP 201
Query: 228 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH 287
+ +DVGT NE+LLKD YIGLRQRR G EY + LDEFM AV YG LIQFEDFAN
Sbjct: 202 VILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANV 261
Query: 288 NAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIA 347
NAF LL KY + FNDDIQ L++ LF GAGEA GIA
Sbjct: 262 NAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIA 321
Query: 348 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407
LI + + K+ P E+ KKI LVDSKGLIV R SL K+ +AHEHE + NL V
Sbjct: 322 HLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVKGRA-SLTQEKEKFAHEHEEMKNLEAIV 379
Query: 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQT 467
+ IKPT LIG + +G F++++++ MA+FNE+P+I ALSNPTS++EC+AE+ Y +K +
Sbjct: 380 QEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRA 439
Query: 468 IILQHFP 474
I P
Sbjct: 440 IFASGSP 446
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 211/426 (49%), Positives = 289/426 (67%), Gaps = 5/426 (1%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
G L+ +PR NKG+AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+
Sbjct: 6 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIY 65
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+M ++ERNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 66 IMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 125
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVD 231
++ NWPE ++ +VVTDGERILGLGDLG GMGIPVGKL LYTA GIRP CLP+ +D
Sbjct: 126 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCID 185
Query: 232 VGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 291
VGT+N LLKD FY+GL Q+R Q+Y +L+DEFM A+ YG LIQFEDF NHNAF
Sbjct: 186 VGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFR 245
Query: 292 LLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIA 351
L KY + FNDDIQ ++EH+ LFLGAGEA GIA LI
Sbjct: 246 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 305
Query: 352 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408
+ + + + +E +KKI + D GL+V RK + +++P+ H E P + DAV
Sbjct: 306 MSMVENGLSE-QEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 363
Query: 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTI 468
++KP+ +IG +G GR FT +VI AMAS NE+P+I ALSNPT+Q+ECTAEEAYT ++ + +
Sbjct: 364 ILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 423
Query: 469 ILQHFP 474
P
Sbjct: 424 FASGSP 429
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/423 (51%), Positives = 277/423 (65%), Gaps = 2/423 (0%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
GY +LRDP NKG AFT +ER + GLLPP + Q Q ++ + + L +Y+
Sbjct: 3 GYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+ L++RNE+LFYK+L ++E P+VYTPTVG ACQ YG FRRP+GL+I++ ++G I
Sbjct: 63 LXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVD 231
L++WPE I+ IVVTDGERILGLGDLGC G GIPVGKLALYTA GG++P CLP+ +D
Sbjct: 123 TXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLD 182
Query: 232 VGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 291
VGT+NE LLKD YIGLR +R GQ Y +LLDEF AV YG LIQFEDFAN NAF
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFR 242
Query: 292 LLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIA 351
LL KY + FNDDIQ L++H LF GAGEA GIA LI
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302
Query: 352 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411
K+ + EE K+I VDSKGLIV R SL K+ +AHEH NL D VK IK
Sbjct: 303 XAXQKEGVSK-EEAIKRIWXVDSKGLIVKGRA-SLTPEKEHFAHEHCEXKNLEDIVKDIK 360
Query: 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQ 471
PT+LIG + +G FT+++++ A+FN++P+I ALSNPTS++ECTAE+ Y +++ + I
Sbjct: 361 PTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFAS 420
Query: 472 HFP 474
P
Sbjct: 421 GSP 423
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/426 (48%), Positives = 278/426 (65%), Gaps = 5/426 (1%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
G L +PR NKG AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+ ++ERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVD 231
++ NWPE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA GIRP CLP+ +D
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 232 VGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 291
VGT+N LLKD FY GL Q+R Q+Y +L+DEF A+ YG LIQFEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 292 LLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIA 351
L KY + FNDDIQ ++EH+ LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 352 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408
+ + +E +KKI D GL+V RK + +++P+ H E P + DAV
Sbjct: 325 XSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 382
Query: 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTI 468
++KP+ +IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+ECTAEEAYT ++ + +
Sbjct: 383 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 442
Query: 469 ILQHFP 474
P
Sbjct: 443 FASGSP 448
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/426 (48%), Positives = 278/426 (65%), Gaps = 5/426 (1%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
G L +PR NKG AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+ ++ERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVD 231
++ NWPE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA GIRP CLP+ +D
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 232 VGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 291
VGT+N LLKD FY GL Q+R Q+Y +L+DEF A+ YG LIQFEDF NHNAF
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 292 LLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIA 351
L KY + FNDDIQ ++EH+ LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 352 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408
+ + +E +KKI D GL+V RK + +++P+ H E P + DAV
Sbjct: 325 XSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 382
Query: 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTI 468
++KP+ +IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+ECTAEEAYT ++ + +
Sbjct: 383 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 442
Query: 469 ILQHFP 474
P
Sbjct: 443 FASGSP 448
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/426 (48%), Positives = 278/426 (65%), Gaps = 5/426 (1%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
G L +PR NKG AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+
Sbjct: 5 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 64
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+ ++ERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 65 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 124
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVD 231
++ NWPE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA GIRP CLP+ +D
Sbjct: 125 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 184
Query: 232 VGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 291
VGT+N LLKD FY GL Q+R Q+Y +L+DEF A+ YG LIQFEDF NHNAF
Sbjct: 185 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 244
Query: 292 LLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIA 351
L KY + FNDDIQ ++EH+ LFLGAGEA GIA LI
Sbjct: 245 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 304
Query: 352 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408
+ + +E +KKI D GL+V RK + +++P+ H E P + DAV
Sbjct: 305 XSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 362
Query: 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTI 468
++KP+ +IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+ECTAEEAYT ++ + +
Sbjct: 363 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 422
Query: 469 ILQHFP 474
P
Sbjct: 423 FASGSP 428
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/426 (48%), Positives = 278/426 (65%), Gaps = 5/426 (1%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
G L +PR NKG AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+
Sbjct: 3 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 62
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+ ++ERNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 63 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 122
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVD 231
++ NWPE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA GIRP CLP+ +D
Sbjct: 123 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 182
Query: 232 VGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 291
VGT+N LLKD FY GL Q+R Q+Y +L+DEF A+ YG LIQFEDF NHNAF
Sbjct: 183 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 242
Query: 292 LLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIA 351
L KY + FNDDIQ ++EH+ LFLGAGEA GIA LI
Sbjct: 243 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 302
Query: 352 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408
+ + +E +KKI D GL+V RK + +++P+ H E P + DAV
Sbjct: 303 XSXVENGLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVN 360
Query: 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTI 468
++KP+ +IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+ECTAEEAYT ++ + +
Sbjct: 361 ILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCL 420
Query: 469 ILQHFP 474
P
Sbjct: 421 FASGSP 426
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 285/427 (66%), Gaps = 8/427 (1%)
Query: 55 LLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMME 114
LL++PR NKG+ F+ ER L GLLPPA ++Q+ Q +++ +R+ L +Y+ +
Sbjct: 42 LLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDG 101
Query: 115 LEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKG--KILE 172
L++RNE+LFY+++ D+V+EL+P+VYTPTVG ACQ +G I+R+P+GLYI++ + KI +
Sbjct: 102 LQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQ 161
Query: 173 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDV 232
+L NW E ++ IVVTDGERILGLGDLG G+GIPVGKLALY ALGG++P CLP+ +DV
Sbjct: 162 ILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDV 221
Query: 233 GTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL 292
GTNN LL D FYIGLR +R G++Y LLD FM A + YG+K LIQFEDFAN NAF L
Sbjct: 222 GTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRL 281
Query: 293 LAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIAL 352
L KY + +FNDDIQ +++ ++LF GAG A TGIAE+I
Sbjct: 282 LDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVH 341
Query: 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNNLLDAVKVIK 411
++ + + EE +I L+D GL+ +RK+ + +H + +A + ++L+ ++ +
Sbjct: 342 QMQNEGISK-EEACNRIYLMDIDGLVTKNRKEMNPRHVQ--FAKDMPETTSILEVIRAAR 398
Query: 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQ 471
P LIG+S V F +EVI AMA NE+P+I ALSNPTS++ECTAEEAYT++ +
Sbjct: 399 PGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYAS 458
Query: 472 H--FPGF 476
FP F
Sbjct: 459 GSPFPNF 465
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 108/275 (39%), Gaps = 42/275 (15%)
Query: 184 VIVVTDGERILGLGDLGCQG-MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242
V VV+D R+LG GD+ G +G+ GK L LGGI +PI +D
Sbjct: 93 VGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICID----------- 138
Query: 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA--KYGTTH 300
+ G+ + + EF+ ++ +G I ED + N +++L +
Sbjct: 139 -------SKNKEGKNDPDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCDI 188
Query: 301 LVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 360
V++DD Q + E R +F+GAG + T LI +
Sbjct: 189 PVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP--- 245
Query: 361 PVEETRKKICLVDSKGLIVSSRKDSLQ--HFKKPW--AHEHEPVNNLLDAVKVIKPTILI 416
KKI + DSKG + + R+D + F + W P A + +LI
Sbjct: 246 ------KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLI 299
Query: 417 GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451
S G K E + S EKP++ +NP +
Sbjct: 300 SLSTPGPGVVKA--EWIKSMGEKPIVFCCANPVPE 332
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 139/345 (40%), Gaps = 72/345 (20%)
Query: 125 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQV 184
K+ +++ EEL + YTP V E C++ I R P +Y KG + V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------V 66
Query: 185 IVVTDGERILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242
VV+DG RILGLG++G G+PV GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---------------------D 104
Query: 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH-- 300
F I +++ QE + +D + A+ +G I ED A+ F +L +
Sbjct: 105 AFPIMIKE-----QEPNKFID-IVKAIAPTFGG---INLEDIASPKCFYILERLREELDI 155
Query: 301 LVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 360
VF+DD Q ++E GAG AG ++ T+A
Sbjct: 156 PVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-------TEA 208
Query: 361 PVE-ETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHEPVNNL----LDAVKVIKPTI 414
V+ E + + LV+ K I++S D + F + W + N+ +A+K I
Sbjct: 209 GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLI 268
Query: 415 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 459
G G + IE M NE ++ L+NP E EEA
Sbjct: 269 SFTRPGPG-VIKPQWIEKM---NEDAIVFPLANPV--PEILPEEA 307
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 137/348 (39%), Gaps = 78/348 (22%)
Query: 125 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQV 184
K+ +++ EEL + YTP V E C++ I R P +Y KG + V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------V 66
Query: 185 IVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDE 243
VV+DG RILGLG++G G+ + GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGV---------------------DA 105
Query: 244 FYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT--THL 301
F I +++ QE + +D + A+ +G I ED A+ F +L +
Sbjct: 106 FPIXIKE-----QEPNKFID-IVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 302 VFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAP 361
VF+DD Q ++E GAG AG ++ T+A
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-------TEAG 209
Query: 362 VE-ETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAH--------EHEPVNNLLDAVKVIK 411
V+ E + + LV+ K I++S D + F + W E P L DA
Sbjct: 210 VKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA----- 264
Query: 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 459
+LI + G K + + NE ++ L+NP E EEA
Sbjct: 265 -DVLISFTRPGPGVIKP--QWIEKXNEDAIVFPLANPV--PEILPEEA 307
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 100/272 (36%), Gaps = 55/272 (20%)
Query: 184 VIVVTDGERILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLK 241
V V++DG +LGLGD+G + +PV GK AL+ A G+ +PI +D E +
Sbjct: 68 VAVISDGTAVLGLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLDTKDTEEII-- 121
Query: 242 DEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY-GTTH 300
+ A+ +G I ED + FE+ + H
Sbjct: 122 ----------------------SIVKALAPTFGG---INLEDISAPRCFEIEQRLIKECH 156
Query: 301 L-VFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTK 359
+ VF+DD +L E + G G AG I T+
Sbjct: 157 IPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSI-----------TR 205
Query: 360 APVEETRKKICLVDSKGLIVSSRKDSL--QHFKKPWAHEHE-PVNNLLDAVKVIKPTILI 416
+ K+ +VD G+I L H E L DA++ I I
Sbjct: 206 KLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALE--GADIFI 263
Query: 417 GSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448
G S G E I MA+ +P+I A++NP
Sbjct: 264 GVSAPG-VLKAEWISKMAA---RPVIFAMANP 291
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 115/324 (35%), Gaps = 67/324 (20%)
Query: 133 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 192
E L ++YTP V + + + P+ Y+ + R V VV+DG
Sbjct: 28 ETLSLLYTPGVADVAR---ACAEDPEKTYV--------------YTSRWNTVAVVSDGSA 70
Query: 193 ILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQ 250
+LGLG++G G +PV GK L+ A I D F I L +
Sbjct: 71 VLGLGNIGPYG-ALPVMEGKAFLFKAFADI---------------------DAFPICLSE 108
Query: 251 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFNDDIQ 308
E + + +++ ++G I ED F +L + VF+DD Q
Sbjct: 109 SE------EEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEMNIPVFHDDQQ 159
Query: 309 XXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368
+ E + + G G AG I + + ++ K
Sbjct: 160 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVKN 208
Query: 369 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTK 427
+ VD KG++ + ++ L + A P D ++ G
Sbjct: 209 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP 268
Query: 428 EVIEAMASFNEKPLILALSNPTSQ 451
E I+ M+ KP+I AL+NP +
Sbjct: 269 EWIKKMS---RKPVIFALANPVPE 289
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 114/324 (35%), Gaps = 67/324 (20%)
Query: 133 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 192
E L ++YTP V + + + P+ Y+ + R V VV+DG
Sbjct: 38 ETLSLLYTPGVADVAR---ACAEDPEKTYV--------------YTSRWNTVAVVSDGSA 80
Query: 193 ILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQ 250
+LGLG++G G +PV GK L+ A I D F I L +
Sbjct: 81 VLGLGNIGPYG-ALPVXEGKAFLFKAFADI---------------------DAFPICLSE 118
Query: 251 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFNDDIQ 308
E + + +++ ++G I ED F +L + VF+DD Q
Sbjct: 119 SE------EEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEXNIPVFHDDQQ 169
Query: 309 XXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368
+ E + + G G AG I + + ++ K
Sbjct: 170 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVKN 218
Query: 369 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTK 427
+ VD KG++ + ++ L + A P D ++ G
Sbjct: 219 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP 278
Query: 428 EVIEAMASFNEKPLILALSNPTSQ 451
E I+ + KP+I AL+NP +
Sbjct: 279 EWIKKXS---RKPVIFALANPVPE 299
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 391 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444
+P + + + L+D +++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 89
>pdb|3HQ8|A Chain A, Ccpa From G. Sulfurreducens S134pV135K VARIANT
pdb|3HQ8|B Chain B, Ccpa From G. Sulfurreducens S134pV135K VARIANT
Length = 345
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 408
A ++++Q K PV+ ++ D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQAPKEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 409 VIKPTILIGSS 419
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 391 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 391 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 391 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 391 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 138 VYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIV 186
V+ P + CQ F L +L++KG L V+ N P ++QV+V
Sbjct: 96 VFKPYYADHCQIKTGPFPGILDLXKNLRQKGVKLAVVSNKPNEAVQVLV 144
>pdb|3RJY|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase In Complex With Substrate
Length = 320
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFT 426
+++ LVD K +IVS H +EP N + + PT+ IG G+ +
Sbjct: 188 RELKLVDDKNIIVS-------------FHYYEPFNFTHQGAEWVSPTLPIGVKWEGKDWE 234
Query: 427 KE-------VIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGFN 477
E + A N P+ L S+++ E W+K I + F GF+
Sbjct: 235 VEQIRNHFKYVSEWAKKNNVPIFLGEFGAYSKADM--ESRVKWTKTVRRIAEEF-GFS 289
>pdb|3RJX|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase
Length = 320
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFT 426
+++ LVD K +IVS H +EP N + + PT+ IG G+ +
Sbjct: 188 RELKLVDDKNIIVS-------------FHYYEPFNFTHQGAEWVSPTLPIGVKWEGKDWE 234
Query: 427 KE-------VIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGFN 477
E + A N P+ L S+++ E W+K I + F GF+
Sbjct: 235 VEQIRNHFKYVSEWAKKNNVPIFLGEFGAYSKADM--ESRVKWTKTVRRIAEEF-GFS 289
>pdb|3NCO|A Chain A, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
pdb|3NCO|B Chain B, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
Length = 320
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFT 426
+++ LVD K +IVS H +EP N + + PT+ IG G+ +
Sbjct: 188 RELKLVDDKNIIVS-------------FHYYEPFNFTHQGAEWVSPTLPIGVKWEGKDWE 234
Query: 427 KE-------VIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGFN 477
E + A N P+ L S+++ E W+K I + F GF+
Sbjct: 235 VEQIRNHFKYVSEWAKKNNVPIFLGEFGAYSKAD--XESRVKWTKTVRRIAEEF-GFS 289
>pdb|3HQ6|A Chain A, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
pdb|3HQ6|B Chain B, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
Length = 345
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 408
A ++++Q K PV+ + + D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQASVEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 409 VIKPTILIGSS 419
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|3HQ7|A Chain A, Ccpa From G. Sulfurreducens, G94kK97QR100I VARIANT
Length = 345
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 408
A ++++Q K PV+ + + D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQASVEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 409 VIKPTILIGSS 419
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|3RU6|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
pdb|3RU6|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of Orotidine
5'-Phosphate Decarboxylase (Pyrf) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168
Length = 303
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 397 HEPVNNLLDAVKVIKP----TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 452
H+ N + DA + + I I +S G+ +EV+ ++ F+++PL+LA+S TS
Sbjct: 86 HDIPNTMADACEEVSKLGVDMINIHASA-GKIAIQEVMTRLSKFSKRPLVLAVSALTSFD 144
Query: 453 E 453
E
Sbjct: 145 E 145
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 263 DEFMSAVKQNYGEKVLIQFEDFAN-------HNAFELLAKY 296
+EF+S VK+ +G +V I+ DF++ H A + L KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKY 213
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 263 DEFMSAVKQNYGEKVLIQFEDFAN-------HNAFELLAKY 296
+EF+S VK+ +G +V I+ DF++ H A + L KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKY 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,490,039
Number of Sequences: 62578
Number of extensions: 552867
Number of successful extensions: 1460
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 30
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)