Query 011816
Match_columns 477
No_of_seqs 222 out of 1289
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:32:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 4E-181 9E-186 1404.2 39.8 430 46-476 25-454 (582)
2 PLN03129 NADP-dependent malic 100.0 8E-174 2E-178 1377.4 42.4 427 49-475 39-465 (581)
3 PRK13529 malate dehydrogenase; 100.0 2E-173 3E-178 1371.3 41.3 426 47-475 12-446 (563)
4 PTZ00317 NADP-dependent malic 100.0 2E-173 5E-178 1369.0 41.5 431 44-476 11-446 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 8.4E-98 2E-102 767.3 25.5 323 85-477 1-329 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 7.6E-91 1.6E-95 763.0 25.7 282 128-476 31-315 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 1.3E-89 2.7E-94 756.3 26.1 281 128-476 35-319 (763)
8 PRK07232 bifunctional malic en 100.0 4.5E-89 9.7E-94 749.1 26.8 277 133-476 31-311 (752)
9 PF00390 malic: Malic enzyme, 100.0 1.1E-83 2.4E-88 604.1 9.7 182 116-297 1-182 (182)
10 PF03949 Malic_M: Malic enzyme 100.0 1.7E-63 3.8E-68 489.2 15.0 167 307-475 1-170 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.2E-62 2.7E-67 482.8 19.2 169 307-477 1-172 (254)
12 cd05312 NAD_bind_1_malic_enz N 100.0 1.5E-61 3.2E-66 480.8 18.7 167 307-475 1-169 (279)
13 cd05311 NAD_bind_2_malic_enz N 100.0 3.2E-33 7E-38 269.9 16.2 151 307-476 1-154 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 1.6E-08 3.4E-13 83.9 11.3 86 309-446 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 98.0 0.00022 4.7E-09 76.2 17.0 185 252-474 105-343 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.6 0.00028 6.2E-09 74.5 10.0 126 308-457 158-285 (417)
17 TIGR00936 ahcY adenosylhomocys 97.5 0.0017 3.6E-08 69.1 13.7 126 299-458 156-292 (406)
18 PLN02477 glutamate dehydrogena 97.5 0.0066 1.4E-07 64.8 17.8 186 253-461 112-324 (410)
19 cd00401 AdoHcyase S-adenosyl-L 97.4 0.0021 4.5E-08 68.6 13.3 128 299-460 163-301 (413)
20 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0022 4.8E-08 62.6 12.4 135 310-467 2-145 (217)
21 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.001 2.2E-08 67.5 9.7 136 287-449 139-276 (311)
22 PRK09414 glutamate dehydrogena 97.3 0.011 2.5E-07 63.6 17.6 189 253-461 138-357 (445)
23 PRK00045 hemA glutamyl-tRNA re 97.3 0.001 2.2E-08 70.4 9.3 125 309-457 161-288 (423)
24 PLN02494 adenosylhomocysteinas 97.2 0.0037 8E-08 67.8 12.9 131 299-462 215-355 (477)
25 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0039 8.4E-08 58.8 10.4 90 316-449 29-119 (168)
26 TIGR02853 spore_dpaA dipicolin 97.1 0.0043 9.3E-08 62.8 11.0 138 308-474 128-265 (287)
27 cd01076 NAD_bind_1_Glu_DH NAD( 97.1 0.0054 1.2E-07 60.2 11.3 132 308-461 8-149 (227)
28 PRK14030 glutamate dehydrogena 97.1 0.039 8.4E-07 59.7 18.5 190 253-461 134-357 (445)
29 PTZ00079 NADP-specific glutama 97.0 0.057 1.2E-06 58.5 19.1 188 253-461 143-366 (454)
30 PRK14982 acyl-ACP reductase; P 97.0 0.0071 1.5E-07 63.1 11.8 113 310-449 134-249 (340)
31 PRK08306 dipicolinate synthase 97.0 0.0067 1.5E-07 61.5 11.2 129 312-474 133-266 (296)
32 PF01488 Shikimate_DH: Shikima 97.0 0.00052 1.1E-08 61.5 2.8 100 328-449 9-112 (135)
33 PRK14031 glutamate dehydrogena 97.0 0.028 6E-07 60.7 16.3 181 253-449 134-347 (444)
34 COG0373 HemA Glutamyl-tRNA red 96.9 0.0037 7.9E-08 66.8 8.5 134 286-450 138-278 (414)
35 PLN00106 malate dehydrogenase 96.8 0.011 2.4E-07 61.1 11.2 142 316-473 4-165 (323)
36 PLN00203 glutamyl-tRNA reducta 96.7 0.0046 9.9E-08 67.7 8.5 121 309-449 243-372 (519)
37 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.021 4.6E-07 54.8 12.1 129 309-468 4-135 (200)
38 PTZ00075 Adenosylhomocysteinas 96.7 0.04 8.7E-07 60.0 14.8 123 299-449 215-344 (476)
39 cd05313 NAD_bind_2_Glu_DH NAD( 96.6 0.048 1E-06 54.9 13.7 136 309-465 16-170 (254)
40 PRK13940 glutamyl-tRNA reducta 96.3 0.013 2.7E-07 62.5 8.3 111 312-449 163-276 (414)
41 PRK14192 bifunctional 5,10-met 96.3 0.033 7.1E-07 56.7 10.8 109 309-461 137-250 (283)
42 PRK14175 bifunctional 5,10-met 96.3 0.025 5.5E-07 57.8 9.8 97 309-449 136-233 (286)
43 cd00650 LDH_MDH_like NAD-depen 96.0 0.012 2.5E-07 58.2 5.7 127 334-473 1-145 (263)
44 cd01078 NAD_bind_H4MPT_DH NADP 96.0 0.037 8E-07 51.9 8.8 114 310-449 7-132 (194)
45 cd01065 NAD_bind_Shikimate_DH 96.0 0.015 3.3E-07 51.7 5.9 128 316-474 4-140 (155)
46 cd05291 HicDH_like L-2-hydroxy 95.9 0.02 4.4E-07 58.0 7.2 124 333-473 2-143 (306)
47 TIGR00518 alaDH alanine dehydr 95.9 0.028 6.1E-07 58.8 8.3 102 329-454 165-276 (370)
48 PRK12549 shikimate 5-dehydroge 95.9 0.026 5.7E-07 57.0 7.7 91 315-422 111-203 (284)
49 PF00670 AdoHcyase_NAD: S-aden 95.9 0.1 2.2E-06 49.5 11.1 117 308-458 3-120 (162)
50 PF00208 ELFV_dehydrog: Glutam 95.6 0.037 8.1E-07 55.0 7.3 129 305-449 5-151 (244)
51 cd05296 GH4_P_beta_glucosidase 95.6 0.024 5.1E-07 60.6 6.3 127 332-473 1-167 (419)
52 PRK00676 hemA glutamyl-tRNA re 95.5 0.06 1.3E-06 56.3 9.0 124 287-451 136-266 (338)
53 PRK00066 ldh L-lactate dehydro 95.5 0.025 5.5E-07 57.9 6.1 125 332-473 7-148 (315)
54 TIGR01809 Shik-DH-AROM shikima 95.5 0.031 6.7E-07 56.3 6.4 96 316-431 108-210 (282)
55 PRK05086 malate dehydrogenase; 95.4 0.066 1.4E-06 54.8 8.6 126 332-473 1-148 (312)
56 PTZ00082 L-lactate dehydrogena 95.3 0.058 1.3E-06 55.5 8.0 124 331-472 6-153 (321)
57 PF03807 F420_oxidored: NADP o 95.2 0.028 6E-07 46.5 4.5 95 333-448 1-96 (96)
58 PF00056 Ldh_1_N: lactate/mala 95.2 0.013 2.9E-07 53.2 2.6 114 332-461 1-130 (141)
59 cd05197 GH4_glycoside_hydrolas 95.2 0.044 9.5E-07 58.7 6.9 126 332-472 1-166 (425)
60 PTZ00117 malate dehydrogenase; 95.2 0.086 1.9E-06 54.1 8.7 126 330-473 4-148 (319)
61 PRK10792 bifunctional 5,10-met 95.2 0.18 4E-06 51.7 10.9 116 311-474 139-260 (285)
62 cd05212 NAD_bind_m-THF_DH_Cycl 95.1 0.18 3.9E-06 46.4 9.7 91 312-445 9-99 (140)
63 PRK06223 malate dehydrogenase; 95.1 0.048 1E-06 54.8 6.5 117 332-473 3-145 (307)
64 PRK09424 pntA NAD(P) transhydr 95.0 0.15 3.1E-06 56.1 10.2 120 328-470 162-311 (509)
65 PTZ00325 malate dehydrogenase; 94.9 0.18 3.8E-06 52.3 10.0 106 329-449 6-128 (321)
66 PRK14191 bifunctional 5,10-met 94.6 0.13 2.9E-06 52.6 8.2 92 311-446 137-229 (285)
67 cd01337 MDH_glyoxysomal_mitoch 94.5 0.21 4.6E-06 51.5 9.6 123 333-473 2-147 (310)
68 TIGR02356 adenyl_thiF thiazole 94.2 0.066 1.4E-06 51.3 4.9 103 327-445 17-143 (202)
69 PLN02928 oxidoreductase family 94.0 0.75 1.6E-05 47.9 12.4 120 308-447 120-263 (347)
70 TIGR02354 thiF_fam2 thiamine b 93.9 0.088 1.9E-06 50.7 5.0 38 327-375 17-54 (200)
71 cd05297 GH4_alpha_glucosidase_ 93.8 0.13 2.9E-06 54.7 6.5 123 332-472 1-167 (423)
72 TIGR01763 MalateDH_bact malate 93.7 0.12 2.6E-06 52.8 5.8 123 332-472 2-143 (305)
73 PRK00257 erythronate-4-phospha 93.7 0.53 1.2E-05 50.0 10.8 65 298-374 80-147 (381)
74 PRK08605 D-lactate dehydrogena 93.6 0.45 9.8E-06 49.1 9.9 93 326-447 141-237 (332)
75 cd01079 NAD_bind_m-THF_DH NAD 93.4 0.49 1.1E-05 46.3 9.1 109 312-443 34-153 (197)
76 PRK15076 alpha-galactosidase; 93.4 0.18 3.9E-06 54.1 6.8 125 332-472 2-169 (431)
77 TIGR01772 MDH_euk_gproteo mala 93.2 0.66 1.4E-05 47.9 10.3 126 333-473 1-146 (312)
78 PRK12749 quinate/shikimate deh 93.2 0.2 4.3E-06 51.0 6.4 50 315-375 108-157 (288)
79 cd00704 MDH Malate dehydrogena 93.2 0.41 8.9E-06 49.5 8.8 121 333-463 2-140 (323)
80 COG0334 GdhA Glutamate dehydro 93.2 3 6.6E-05 45.0 15.4 187 252-461 111-325 (411)
81 TIGR01758 MDH_euk_cyt malate d 93.1 0.52 1.1E-05 48.8 9.5 130 333-473 1-151 (324)
82 PRK14189 bifunctional 5,10-met 93.1 0.33 7.1E-06 49.8 7.9 94 311-448 138-233 (285)
83 PRK12475 thiamine/molybdopteri 93.1 0.27 5.8E-06 51.2 7.3 102 327-444 20-147 (338)
84 PRK14194 bifunctional 5,10-met 93.0 0.4 8.6E-06 49.6 8.2 107 311-461 139-254 (301)
85 PRK15438 erythronate-4-phospha 92.9 0.96 2.1E-05 48.1 11.2 54 309-374 94-147 (378)
86 PF01210 NAD_Gly3P_dh_N: NAD-d 92.9 0.14 3E-06 46.9 4.4 85 333-437 1-93 (157)
87 PRK08328 hypothetical protein; 92.9 0.061 1.3E-06 52.7 2.2 54 293-375 7-60 (231)
88 cd05293 LDH_1 A subgroup of L- 92.8 0.24 5.3E-06 50.8 6.4 124 332-473 4-146 (312)
89 PRK08762 molybdopterin biosynt 92.6 0.23 5E-06 51.9 6.1 102 327-444 131-256 (376)
90 PRK08223 hypothetical protein; 92.6 0.22 4.8E-06 51.1 5.8 124 290-444 4-150 (287)
91 PRK14027 quinate/shikimate deh 92.6 0.26 5.7E-06 50.0 6.3 49 316-375 112-160 (283)
92 PF02826 2-Hacid_dh_C: D-isome 92.6 0.38 8.2E-06 45.0 6.9 98 322-447 27-128 (178)
93 PRK14178 bifunctional 5,10-met 92.5 0.35 7.5E-06 49.5 7.1 108 310-461 131-243 (279)
94 cd00757 ThiF_MoeB_HesA_family 92.4 0.45 9.7E-06 46.3 7.4 39 327-376 17-55 (228)
95 cd01336 MDH_cytoplasmic_cytoso 92.4 0.77 1.7E-05 47.5 9.5 122 332-463 3-142 (325)
96 cd05290 LDH_3 A subgroup of L- 92.3 0.27 5.8E-06 50.5 6.0 123 333-473 1-145 (307)
97 cd01487 E1_ThiF_like E1_ThiF_l 92.2 0.47 1E-05 44.6 7.1 96 333-444 1-120 (174)
98 PRK14619 NAD(P)H-dependent gly 92.2 1.4 3.1E-05 44.5 11.0 33 331-375 4-36 (308)
99 PRK14176 bifunctional 5,10-met 92.2 0.59 1.3E-05 48.1 8.2 116 311-474 144-264 (287)
100 TIGR02992 ectoine_eutC ectoine 92.1 0.66 1.4E-05 47.7 8.7 115 317-458 117-237 (326)
101 cd01339 LDH-like_MDH L-lactate 92.1 0.24 5.2E-06 50.0 5.3 118 334-473 1-141 (300)
102 PRK08293 3-hydroxybutyryl-CoA 92.1 0.3 6.5E-06 48.8 5.9 98 332-451 4-123 (287)
103 PRK12548 shikimate 5-dehydroge 92.0 0.36 7.8E-06 48.8 6.4 50 315-375 110-159 (289)
104 COG0111 SerA Phosphoglycerate 91.8 1.3 2.7E-05 46.1 10.2 111 299-434 89-224 (324)
105 PRK00258 aroE shikimate 5-dehy 91.7 0.44 9.5E-06 47.7 6.6 88 315-422 106-196 (278)
106 TIGR00561 pntA NAD(P) transhyd 91.5 0.78 1.7E-05 50.6 8.8 184 237-455 80-294 (511)
107 PRK06129 3-hydroxyacyl-CoA deh 91.2 0.97 2.1E-05 45.7 8.7 32 332-375 3-34 (308)
108 cd05298 GH4_GlvA_pagL_like Gly 91.1 0.45 9.8E-06 51.3 6.4 110 332-456 1-151 (437)
109 PF00899 ThiF: ThiF family; I 91.0 0.39 8.5E-06 42.6 5.0 37 330-377 1-37 (135)
110 cd05292 LDH_2 A subgroup of L- 90.8 0.39 8.5E-06 48.9 5.4 124 333-473 2-142 (308)
111 TIGR01915 npdG NADPH-dependent 90.6 1.2 2.6E-05 42.9 8.2 96 333-451 2-106 (219)
112 PRK07688 thiamine/molybdopteri 90.6 0.31 6.7E-06 50.7 4.5 104 327-445 20-148 (339)
113 PLN02602 lactate dehydrogenase 90.5 0.54 1.2E-05 49.3 6.2 122 332-472 38-179 (350)
114 PRK14183 bifunctional 5,10-met 90.5 1 2.2E-05 46.3 8.0 92 310-445 136-228 (281)
115 COG0169 AroE Shikimate 5-dehyd 90.5 0.6 1.3E-05 47.8 6.4 47 317-374 110-158 (283)
116 PRK14179 bifunctional 5,10-met 90.4 0.96 2.1E-05 46.4 7.8 94 311-448 138-233 (284)
117 PRK14184 bifunctional 5,10-met 90.2 0.89 1.9E-05 46.8 7.3 111 311-461 137-252 (286)
118 cd01338 MDH_choloroplast_like 90.2 1.6 3.4E-05 45.2 9.3 121 332-463 3-142 (322)
119 PRK05600 thiamine biosynthesis 90.1 0.98 2.1E-05 47.6 7.7 102 327-444 37-162 (370)
120 PRK07634 pyrroline-5-carboxyla 90.0 0.77 1.7E-05 44.2 6.4 100 330-449 3-102 (245)
121 PRK14190 bifunctional 5,10-met 90.0 1.1 2.4E-05 46.0 7.8 92 311-446 138-230 (284)
122 TIGR01759 MalateDH-SF1 malate 89.9 1.6 3.4E-05 45.3 9.0 122 332-463 4-143 (323)
123 PRK14851 hypothetical protein; 89.9 1.4 3E-05 50.3 9.1 122 327-465 39-194 (679)
124 PF01262 AlaDh_PNT_C: Alanine 89.8 0.13 2.8E-06 47.6 0.8 89 329-434 18-130 (168)
125 PRK05442 malate dehydrogenase; 89.8 2 4.3E-05 44.7 9.5 122 332-463 5-144 (326)
126 PRK14618 NAD(P)H-dependent gly 89.8 0.4 8.8E-06 48.6 4.5 95 332-449 5-107 (328)
127 PF02882 THF_DHG_CYH_C: Tetrah 89.6 1.8 3.9E-05 40.8 8.3 83 311-431 16-99 (160)
128 PRK07574 formate dehydrogenase 89.6 3.6 7.7E-05 43.9 11.5 95 326-447 187-285 (385)
129 PRK14188 bifunctional 5,10-met 89.5 1.2 2.5E-05 46.0 7.5 92 311-446 138-230 (296)
130 PRK13243 glyoxylate reductase; 89.4 4.4 9.6E-05 42.0 11.8 93 326-447 145-241 (333)
131 PF02056 Glyco_hydro_4: Family 89.4 0.49 1.1E-05 45.6 4.5 110 333-456 1-152 (183)
132 PLN02306 hydroxypyruvate reduc 89.3 3.8 8.2E-05 43.6 11.4 129 297-447 107-273 (386)
133 COG0686 Ald Alanine dehydrogen 89.1 0.6 1.3E-05 49.0 5.1 106 329-458 166-290 (371)
134 TIGR00872 gnd_rel 6-phosphoglu 88.9 1 2.2E-05 45.5 6.5 99 333-457 2-102 (298)
135 PRK14174 bifunctional 5,10-met 88.9 1.4 3E-05 45.5 7.5 96 311-446 139-235 (295)
136 PRK12550 shikimate 5-dehydroge 88.8 0.97 2.1E-05 45.7 6.3 48 316-375 108-155 (272)
137 PRK08374 homoserine dehydrogen 88.6 2.8 6E-05 43.6 9.6 105 332-443 3-120 (336)
138 TIGR03140 AhpF alkyl hydropero 88.6 1.3 2.8E-05 48.1 7.5 86 264-352 137-233 (515)
139 PRK14177 bifunctional 5,10-met 88.6 1.9 4E-05 44.4 8.2 106 312-461 140-247 (284)
140 PRK08291 ectoine utilization p 88.5 1.6 3.6E-05 44.8 7.9 115 317-458 120-240 (330)
141 PTZ00345 glycerol-3-phosphate 88.4 1.8 4E-05 45.7 8.3 24 329-352 9-32 (365)
142 PRK14172 bifunctional 5,10-met 88.4 2 4.3E-05 44.0 8.3 91 311-445 138-229 (278)
143 TIGR01771 L-LDH-NAD L-lactate 88.4 0.66 1.4E-05 47.4 4.9 123 336-473 1-139 (299)
144 PRK12480 D-lactate dehydrogena 87.8 5.6 0.00012 41.2 11.3 66 298-375 91-178 (330)
145 PRK15317 alkyl hydroperoxide r 87.8 0.77 1.7E-05 49.8 5.2 85 279-375 148-243 (517)
146 PRK00094 gpsA NAD(P)H-dependen 87.6 1.1 2.3E-05 44.8 5.7 102 333-450 3-109 (325)
147 PRK14168 bifunctional 5,10-met 87.6 2.3 5E-05 44.0 8.2 98 309-446 139-237 (297)
148 PRK06130 3-hydroxybutyryl-CoA 87.5 2 4.2E-05 43.2 7.6 31 332-374 5-35 (311)
149 PLN02516 methylenetetrahydrofo 87.5 2.3 5E-05 44.1 8.1 91 310-444 146-237 (299)
150 PRK14171 bifunctional 5,10-met 87.5 2.3 5.1E-05 43.8 8.1 94 309-446 137-231 (288)
151 PRK06436 glycerate dehydrogena 87.4 8.6 0.00019 39.6 12.2 38 326-375 117-154 (303)
152 PRK14187 bifunctional 5,10-met 87.3 2.5 5.5E-05 43.7 8.3 91 311-445 140-231 (294)
153 PRK08644 thiamine biosynthesis 87.3 0.65 1.4E-05 45.1 3.9 38 327-375 24-61 (212)
154 PRK09880 L-idonate 5-dehydroge 87.2 9.5 0.00021 38.5 12.3 120 318-460 158-280 (343)
155 cd05294 LDH-like_MDH_nadp A la 87.1 3 6.4E-05 42.7 8.7 125 332-473 1-147 (309)
156 cd00300 LDH_like L-lactate deh 86.9 1.2 2.6E-05 45.3 5.7 123 334-473 1-141 (300)
157 TIGR02355 moeB molybdopterin s 86.9 0.65 1.4E-05 46.0 3.7 105 327-446 20-147 (240)
158 PRK14166 bifunctional 5,10-met 86.8 2.7 5.8E-05 43.3 8.1 94 309-446 135-229 (282)
159 PRK09260 3-hydroxybutyryl-CoA 86.8 0.52 1.1E-05 47.1 3.0 32 332-375 2-33 (288)
160 COG0345 ProC Pyrroline-5-carbo 86.7 3.1 6.8E-05 42.4 8.5 35 332-375 2-37 (266)
161 PRK14193 bifunctional 5,10-met 86.6 2.6 5.7E-05 43.3 8.0 94 311-446 138-232 (284)
162 PRK12921 2-dehydropantoate 2-r 86.6 1.8 4E-05 42.8 6.7 100 333-450 2-106 (305)
163 PRK08410 2-hydroxyacid dehydro 86.5 6.6 0.00014 40.3 10.8 117 298-446 85-232 (311)
164 PRK15116 sulfur acceptor prote 86.4 2.1 4.6E-05 43.5 7.1 41 327-378 26-66 (268)
165 PRK14170 bifunctional 5,10-met 86.3 3 6.4E-05 43.0 8.1 108 310-461 136-249 (284)
166 cd01485 E1-1_like Ubiquitin ac 86.2 0.68 1.5E-05 44.4 3.3 39 327-376 15-53 (198)
167 PRK06487 glycerate dehydrogena 86.2 7.5 0.00016 40.0 11.1 115 298-446 88-233 (317)
168 PRK15469 ghrA bifunctional gly 85.9 6.3 0.00014 40.6 10.4 37 327-375 132-168 (312)
169 PF07992 Pyr_redox_2: Pyridine 85.8 1.2 2.6E-05 40.6 4.6 32 333-376 1-32 (201)
170 PRK06141 ornithine cyclodeamin 85.8 3.5 7.6E-05 42.2 8.4 104 330-458 124-232 (314)
171 PRK06522 2-dehydropantoate 2-r 85.7 2.6 5.7E-05 41.5 7.3 101 333-450 2-104 (304)
172 PRK05690 molybdopterin biosynt 85.4 0.96 2.1E-05 44.8 4.0 105 327-447 28-156 (245)
173 KOG0029 Amine oxidase [Seconda 85.4 0.45 9.7E-06 52.2 1.9 37 329-368 13-49 (501)
174 cd01492 Aos1_SUMO Ubiquitin ac 85.3 0.74 1.6E-05 44.2 3.1 39 327-376 17-55 (197)
175 PRK13581 D-3-phosphoglycerate 85.2 7.4 0.00016 42.9 11.1 66 298-375 86-172 (526)
176 PRK14185 bifunctional 5,10-met 85.2 3.8 8.3E-05 42.4 8.3 95 311-445 137-232 (293)
177 PLN00112 malate dehydrogenase 85.1 3.2 6.9E-05 45.2 8.0 133 331-473 100-252 (444)
178 TIGR03366 HpnZ_proposed putati 85.0 8 0.00017 38.0 10.2 128 316-471 107-243 (280)
179 PRK09310 aroDE bifunctional 3- 84.9 1.9 4E-05 46.9 6.3 47 316-374 317-363 (477)
180 PRK12439 NAD(P)H-dependent gly 84.7 1.4 3.1E-05 45.4 5.0 22 331-352 7-28 (341)
181 TIGR00507 aroE shikimate 5-deh 84.4 2.4 5.1E-05 42.2 6.3 48 315-374 101-148 (270)
182 TIGR01408 Ube1 ubiquitin-activ 84.2 0.48 1.1E-05 56.0 1.5 43 327-375 415-457 (1008)
183 PRK07531 bifunctional 3-hydrox 84.2 2.3 5E-05 46.3 6.6 31 332-374 5-35 (495)
184 PRK07680 late competence prote 84.1 2.2 4.8E-05 42.3 5.9 98 333-450 2-100 (273)
185 PRK07066 3-hydroxybutyryl-CoA 84.1 2.3 4.9E-05 44.2 6.2 31 332-374 8-38 (321)
186 PRK11880 pyrroline-5-carboxyla 84.0 2.7 5.8E-05 41.1 6.4 95 332-449 3-97 (267)
187 TIGR01327 PGDH D-3-phosphoglyc 84.0 8.3 0.00018 42.5 10.8 66 298-375 84-170 (525)
188 KOG0685 Flavin-containing amin 83.9 0.52 1.1E-05 51.6 1.5 26 327-352 17-42 (498)
189 PRK09599 6-phosphogluconate de 83.7 5.6 0.00012 40.1 8.7 93 333-449 2-97 (301)
190 PRK15409 bifunctional glyoxyla 83.7 8.7 0.00019 39.8 10.2 26 326-351 140-165 (323)
191 PRK14620 NAD(P)H-dependent gly 83.6 2.9 6.2E-05 42.4 6.6 31 333-375 2-32 (326)
192 PRK14169 bifunctional 5,10-met 83.6 4.9 0.00011 41.4 8.2 91 310-444 135-226 (282)
193 cd01483 E1_enzyme_family Super 83.4 1.6 3.5E-05 38.9 4.2 33 333-376 1-33 (143)
194 COG0039 Mdh Malate/lactate deh 83.4 3.6 7.9E-05 42.9 7.3 114 332-463 1-132 (313)
195 PLN03139 formate dehydrogenase 83.2 8.5 0.00018 41.1 10.1 95 326-447 194-292 (386)
196 PLN02527 aspartate carbamoyltr 82.9 25 0.00054 36.4 13.1 171 263-459 87-277 (306)
197 PRK14181 bifunctional 5,10-met 82.8 5.8 0.00013 40.9 8.5 100 309-448 131-232 (287)
198 PRK14180 bifunctional 5,10-met 82.8 5.2 0.00011 41.2 8.1 93 309-445 136-229 (282)
199 cd00755 YgdL_like Family of ac 82.7 1.5 3.2E-05 43.5 4.0 39 327-376 7-45 (231)
200 PRK14167 bifunctional 5,10-met 82.7 5.5 0.00012 41.3 8.3 96 311-446 137-233 (297)
201 PRK06932 glycerate dehydrogena 82.3 12 0.00027 38.5 10.7 88 327-447 143-234 (314)
202 PRK05597 molybdopterin biosynt 82.1 1.4 3.1E-05 46.0 3.9 104 327-446 24-151 (355)
203 PRK14182 bifunctional 5,10-met 82.1 6.2 0.00013 40.6 8.3 91 311-445 137-228 (282)
204 PLN02616 tetrahydrofolate dehy 82.0 5.2 0.00011 42.6 7.9 91 311-445 211-302 (364)
205 PRK14173 bifunctional 5,10-met 81.8 6 0.00013 40.8 8.1 91 311-445 135-226 (287)
206 PF01494 FAD_binding_3: FAD bi 81.8 1.9 4.1E-05 42.1 4.4 35 332-378 2-36 (356)
207 TIGR01381 E1_like_apg7 E1-like 81.4 1.5 3.2E-05 49.8 3.9 40 327-377 334-373 (664)
208 KOG1370 S-adenosylhomocysteine 81.3 5.5 0.00012 42.1 7.6 117 323-469 206-338 (434)
209 PRK11790 D-3-phosphoglycerate 80.6 19 0.0004 38.6 11.6 68 296-375 95-183 (409)
210 KOG0069 Glyoxylate/hydroxypyru 80.6 14 0.0003 39.0 10.5 110 309-447 120-254 (336)
211 PF13738 Pyr_redox_3: Pyridine 80.5 1.9 4.1E-05 39.6 3.7 30 335-375 1-30 (203)
212 PRK06153 hypothetical protein; 79.9 2.2 4.8E-05 45.8 4.4 38 327-375 172-209 (393)
213 cd08237 ribitol-5-phosphate_DH 79.9 38 0.00083 34.3 13.2 35 330-374 163-197 (341)
214 TIGR03376 glycerol3P_DH glycer 79.6 3.7 8E-05 43.0 5.9 20 333-352 1-20 (342)
215 PRK02842 light-independent pro 79.1 9.4 0.0002 40.8 8.8 88 318-420 277-369 (427)
216 PRK12490 6-phosphogluconate de 79.0 10 0.00022 38.3 8.6 93 333-449 2-97 (299)
217 PRK07878 molybdopterin biosynt 79.0 1.8 4E-05 45.7 3.5 102 327-444 38-163 (392)
218 PRK08229 2-dehydropantoate 2-r 78.8 4.2 9.1E-05 41.2 5.9 103 332-451 3-112 (341)
219 PRK14186 bifunctional 5,10-met 78.8 8.9 0.00019 39.8 8.2 92 311-446 138-230 (297)
220 KOG1495 Lactate dehydrogenase 78.7 7.2 0.00016 40.6 7.4 128 327-472 16-162 (332)
221 PRK07411 hypothetical protein; 78.6 1.9 4.1E-05 45.7 3.5 102 327-444 34-159 (390)
222 COG1486 CelF Alpha-galactosida 78.6 2.1 4.5E-05 46.6 3.8 121 330-465 2-162 (442)
223 PLN02520 bifunctional 3-dehydr 78.6 4.6 9.9E-05 44.6 6.5 48 316-375 354-411 (529)
224 TIGR02371 ala_DH_arch alanine 78.4 13 0.00029 38.3 9.4 105 330-459 127-236 (325)
225 PRK09754 phenylpropionate diox 78.4 3.1 6.7E-05 43.3 4.9 37 330-376 2-38 (396)
226 PLN02819 lysine-ketoglutarate 78.3 11 0.00023 45.4 9.7 115 316-435 179-326 (1042)
227 PRK07340 ornithine cyclodeamin 78.3 16 0.00035 37.4 9.9 105 329-459 123-231 (304)
228 PRK07231 fabG 3-ketoacyl-(acyl 78.1 4.7 0.0001 37.8 5.6 36 328-375 2-38 (251)
229 PF00070 Pyr_redox: Pyridine n 78.0 4.4 9.6E-05 32.6 4.7 35 333-379 1-35 (80)
230 PRK07502 cyclohexadienyl dehyd 77.8 14 0.00029 37.4 9.2 34 332-375 7-40 (307)
231 PRK07679 pyrroline-5-carboxyla 77.6 17 0.00038 36.1 9.8 36 331-374 3-38 (279)
232 PLN02897 tetrahydrofolate dehy 77.6 8.7 0.00019 40.7 7.9 91 311-445 194-285 (345)
233 cd01491 Ube1_repeat1 Ubiquitin 77.2 2.3 4.9E-05 43.7 3.4 38 327-375 15-52 (286)
234 TIGR01292 TRX_reduct thioredox 76.9 2.9 6.3E-05 40.4 3.9 31 333-375 2-32 (300)
235 PF03446 NAD_binding_2: NAD bi 76.9 2.8 6.1E-05 38.5 3.6 99 332-458 2-104 (163)
236 PTZ00142 6-phosphogluconate de 76.5 4.5 9.7E-05 44.2 5.6 98 332-449 2-104 (470)
237 PF02737 3HCDH_N: 3-hydroxyacy 76.4 3.8 8.2E-05 38.7 4.5 31 333-375 1-31 (180)
238 COG5322 Predicted dehydrogenas 76.2 3.3 7.2E-05 43.0 4.2 46 307-352 143-189 (351)
239 PRK01713 ornithine carbamoyltr 76.1 17 0.00038 38.0 9.6 138 262-419 91-233 (334)
240 PF01113 DapB_N: Dihydrodipico 76.0 6.8 0.00015 34.7 5.7 96 332-444 1-97 (124)
241 PRK06407 ornithine cyclodeamin 75.7 13 0.00027 38.2 8.3 105 330-459 116-226 (301)
242 TIGR01757 Malate-DH_plant mala 75.0 13 0.00029 39.8 8.5 131 331-473 44-196 (387)
243 cd01484 E1-2_like Ubiquitin ac 74.7 4 8.7E-05 40.6 4.3 98 333-446 1-124 (234)
244 TIGR02028 ChlP geranylgeranyl 74.5 3.5 7.5E-05 43.2 4.0 20 333-352 2-21 (398)
245 PF05834 Lycopene_cycl: Lycope 74.3 4 8.6E-05 42.4 4.4 35 334-378 2-36 (374)
246 COG1052 LdhA Lactate dehydroge 74.2 22 0.00048 37.1 9.7 92 324-445 139-235 (324)
247 TIGR02023 BchP-ChlP geranylger 74.1 3.7 8E-05 42.4 4.1 20 333-352 2-21 (388)
248 PRK06270 homoserine dehydrogen 73.9 28 0.00061 36.2 10.5 104 332-443 3-123 (341)
249 PRK06823 ornithine cyclodeamin 73.9 22 0.00048 36.8 9.6 105 330-459 127-236 (315)
250 PRK01710 murD UDP-N-acetylmura 73.8 26 0.00057 37.5 10.5 111 329-473 12-125 (458)
251 PRK06928 pyrroline-5-carboxyla 73.4 7.8 0.00017 38.8 6.0 35 332-375 2-37 (277)
252 cd01486 Apg7 Apg7 is an E1-lik 73.1 4.5 9.7E-05 42.2 4.3 32 333-375 1-32 (307)
253 PRK06184 hypothetical protein; 72.6 4.5 9.7E-05 43.4 4.4 34 330-375 2-35 (502)
254 PRK11883 protoporphyrinogen ox 72.4 2.3 5.1E-05 44.0 2.1 22 332-353 1-22 (451)
255 cd01488 Uba3_RUB Ubiquitin act 72.3 4.7 0.0001 41.6 4.2 32 333-375 1-32 (291)
256 PRK06847 hypothetical protein; 72.3 4.8 0.0001 40.7 4.3 22 331-352 4-25 (375)
257 PRK07236 hypothetical protein; 71.9 5.4 0.00012 41.0 4.7 24 329-352 4-27 (386)
258 TIGR00873 gnd 6-phosphoglucona 71.9 10 0.00022 41.5 6.9 94 334-447 2-99 (467)
259 PRK11199 tyrA bifunctional cho 71.8 19 0.0004 38.0 8.6 99 331-455 98-205 (374)
260 PLN02688 pyrroline-5-carboxyla 71.4 19 0.00042 35.2 8.2 34 333-374 2-36 (266)
261 COG0240 GpsA Glycerol-3-phosph 71.4 7.9 0.00017 40.8 5.7 94 332-446 2-105 (329)
262 PTZ00431 pyrroline carboxylate 71.4 15 0.00033 36.3 7.5 104 330-449 2-116 (260)
263 TIGR02622 CDP_4_6_dhtase CDP-g 71.3 11 0.00023 38.3 6.6 102 329-446 2-127 (349)
264 COG0190 FolD 5,10-methylene-te 71.3 16 0.00034 37.8 7.7 123 277-443 92-225 (283)
265 PRK08163 salicylate hydroxylas 71.1 5.1 0.00011 41.0 4.2 22 331-352 4-25 (396)
266 TIGR02279 PaaC-3OHAcCoADH 3-hy 70.6 14 0.0003 40.7 7.6 33 331-375 5-37 (503)
267 PRK07877 hypothetical protein; 70.6 11 0.00024 43.5 7.1 105 327-446 103-229 (722)
268 KOG2250 Glutamate/leucine/phen 70.6 40 0.00086 37.5 10.9 186 257-461 159-379 (514)
269 PRK12409 D-amino acid dehydrog 70.3 5.6 0.00012 41.1 4.4 33 332-376 2-34 (410)
270 COG2423 Predicted ornithine cy 70.3 22 0.00047 37.4 8.7 122 314-461 115-241 (330)
271 PRK04176 ribulose-1,5-biphosph 70.3 5.3 0.00012 39.8 4.0 34 331-376 25-58 (257)
272 PLN02172 flavin-containing mon 70.0 6.2 0.00013 42.7 4.8 25 328-352 7-31 (461)
273 PRK09126 hypothetical protein; 70.0 5.4 0.00012 40.7 4.1 33 331-375 3-35 (392)
274 PRK07364 2-octaprenyl-6-methox 69.8 5 0.00011 41.3 3.9 22 331-352 18-39 (415)
275 cd01489 Uba2_SUMO Ubiquitin ac 69.7 6.3 0.00014 41.0 4.5 33 333-376 1-33 (312)
276 COG0644 FixC Dehydrogenases (f 69.4 5.9 0.00013 41.3 4.4 38 331-380 3-40 (396)
277 PRK15181 Vi polysaccharide bio 69.3 21 0.00045 36.4 8.2 105 325-446 9-141 (348)
278 TIGR00465 ilvC ketol-acid redu 69.3 18 0.00039 37.5 7.7 24 329-352 1-24 (314)
279 TIGR03169 Nterm_to_SelD pyridi 69.2 3.4 7.4E-05 42.0 2.5 37 333-378 1-37 (364)
280 PRK09564 coenzyme A disulfide 69.1 6.4 0.00014 41.2 4.5 36 332-377 1-36 (444)
281 TIGR03693 ocin_ThiF_like putat 69.1 23 0.00051 40.3 9.0 152 256-442 68-235 (637)
282 PRK06249 2-dehydropantoate 2-r 68.9 14 0.00031 37.4 6.8 25 329-353 3-27 (313)
283 PRK05732 2-octaprenyl-6-methox 68.8 6.8 0.00015 39.9 4.5 37 330-375 2-38 (395)
284 PRK05479 ketol-acid reductoiso 68.7 19 0.00041 37.8 7.9 25 328-352 14-38 (330)
285 PRK06476 pyrroline-5-carboxyla 68.7 14 0.00029 36.3 6.5 33 333-374 2-34 (258)
286 PF01266 DAO: FAD dependent ox 68.7 7.5 0.00016 38.0 4.7 33 333-377 1-33 (358)
287 TIGR01790 carotene-cycl lycope 68.5 5.8 0.00012 40.6 4.0 30 334-375 2-31 (388)
288 PF13454 NAD_binding_9: FAD-NA 68.5 5.2 0.00011 36.5 3.3 36 335-377 1-36 (156)
289 PRK06718 precorrin-2 dehydroge 68.4 7.1 0.00015 37.7 4.3 112 328-470 7-122 (202)
290 PRK06719 precorrin-2 dehydroge 68.2 7.7 0.00017 36.1 4.4 35 328-374 10-44 (157)
291 PRK12771 putative glutamate sy 68.2 9.9 0.00021 41.8 5.9 35 329-375 135-169 (564)
292 PRK06475 salicylate hydroxylas 68.0 5.8 0.00012 41.1 3.9 21 332-352 3-23 (400)
293 PRK10886 DnaA initiator-associ 67.6 26 0.00056 34.0 8.0 104 329-448 39-145 (196)
294 TIGR01214 rmlD dTDP-4-dehydror 67.4 23 0.00049 34.3 7.7 60 333-422 1-61 (287)
295 PRK06046 alanine dehydrogenase 66.9 33 0.00072 35.3 9.1 104 330-459 128-237 (326)
296 KOG2337 Ubiquitin activating E 66.9 4.9 0.00011 44.9 3.2 38 329-377 338-375 (669)
297 cd00377 ICL_PEPM Members of th 66.9 1.4E+02 0.0031 29.7 16.0 44 425-472 183-226 (243)
298 PRK07233 hypothetical protein; 66.6 6.2 0.00014 40.4 3.8 31 333-375 1-31 (434)
299 TIGR02032 GG-red-SF geranylger 66.6 7.2 0.00016 37.4 4.0 32 333-376 2-33 (295)
300 PRK13512 coenzyme A disulfide 66.6 5.9 0.00013 42.0 3.7 33 333-375 3-35 (438)
301 TIGR01470 cysG_Nterm siroheme 66.5 8.4 0.00018 37.3 4.4 36 328-375 6-41 (205)
302 PRK07045 putative monooxygenas 66.4 7.3 0.00016 40.0 4.2 22 332-353 6-27 (388)
303 PRK08618 ornithine cyclodeamin 66.3 14 0.0003 38.1 6.2 102 330-457 126-233 (325)
304 PRK06753 hypothetical protein; 65.9 7.3 0.00016 39.5 4.1 20 333-352 2-21 (373)
305 PRK12769 putative oxidoreducta 65.4 7.9 0.00017 43.4 4.6 34 330-375 326-359 (654)
306 PF03447 NAD_binding_3: Homose 65.3 14 0.00031 31.8 5.2 88 338-443 1-88 (117)
307 PLN00093 geranylgeranyl diphos 65.3 7.3 0.00016 42.0 4.1 26 327-352 33-60 (450)
308 COG0499 SAM1 S-adenosylhomocys 65.3 19 0.00041 38.8 7.0 120 304-458 185-306 (420)
309 PRK07608 ubiquinone biosynthes 65.3 7.2 0.00016 39.7 3.9 32 332-375 6-37 (388)
310 PF01946 Thi4: Thi4 family; PD 65.1 9.4 0.0002 38.4 4.5 37 330-378 16-52 (230)
311 TIGR01316 gltA glutamate synth 64.9 9.2 0.0002 40.8 4.8 36 328-375 130-165 (449)
312 PRK06035 3-hydroxyacyl-CoA deh 64.7 9 0.0002 38.3 4.4 32 332-375 4-35 (291)
313 PRK12491 pyrroline-5-carboxyla 64.7 26 0.00056 35.3 7.7 35 332-374 3-37 (272)
314 TIGR00292 thiazole biosynthesi 64.7 7.8 0.00017 38.6 4.0 37 330-378 20-56 (254)
315 KOG2304 3-hydroxyacyl-CoA dehy 64.3 5.8 0.00013 40.4 2.9 32 332-375 12-43 (298)
316 PF03435 Saccharop_dh: Sacchar 64.2 3.2 6.8E-05 43.0 1.1 91 334-443 1-96 (386)
317 TIGR03026 NDP-sugDHase nucleot 64.1 22 0.00047 37.6 7.3 31 333-375 2-32 (411)
318 PRK12429 3-hydroxybutyrate deh 64.0 25 0.00053 33.2 7.0 35 329-375 2-37 (258)
319 PRK12810 gltD glutamate syntha 64.0 9.6 0.00021 40.9 4.7 34 330-375 142-175 (471)
320 PRK10157 putative oxidoreducta 63.8 7.9 0.00017 41.0 4.0 32 332-375 6-37 (428)
321 PF13450 NAD_binding_8: NAD(P) 63.7 10 0.00022 30.3 3.7 30 336-377 1-30 (68)
322 PLN02350 phosphogluconate dehy 63.3 22 0.00049 39.2 7.4 97 333-449 8-110 (493)
323 PRK08849 2-octaprenyl-3-methyl 63.2 9.4 0.0002 39.3 4.3 33 331-375 3-35 (384)
324 PRK09490 metH B12-dependent me 63.0 40 0.00087 41.4 10.0 119 264-425 442-572 (1229)
325 TIGR01505 tartro_sem_red 2-hyd 63.0 24 0.00053 35.1 7.1 31 333-375 1-31 (291)
326 PLN02268 probable polyamine ox 62.7 3.8 8.2E-05 42.8 1.4 20 333-352 2-21 (435)
327 PRK08773 2-octaprenyl-3-methyl 62.7 8.2 0.00018 39.6 3.8 34 331-376 6-39 (392)
328 PRK08013 oxidoreductase; Provi 62.6 9.3 0.0002 39.7 4.2 33 331-375 3-35 (400)
329 TIGR01988 Ubi-OHases Ubiquinon 62.6 8.4 0.00018 38.8 3.8 31 334-376 2-32 (385)
330 TIGR01984 UbiH 2-polyprenyl-6- 62.5 7.8 0.00017 39.3 3.6 20 334-353 2-21 (382)
331 cd08281 liver_ADH_like1 Zinc-d 62.4 1.1E+02 0.0024 31.3 11.9 34 330-374 191-224 (371)
332 PRK14106 murD UDP-N-acetylmura 62.4 11 0.00023 39.8 4.7 36 328-375 2-37 (450)
333 COG0569 TrkA K+ transport syst 62.4 13 0.00029 36.3 5.0 95 332-449 1-104 (225)
334 COG1179 Dinucleotide-utilizing 62.3 14 0.0003 37.8 5.2 42 328-380 27-68 (263)
335 PRK12828 short chain dehydroge 62.3 13 0.00029 34.4 4.8 36 328-375 4-40 (239)
336 PRK07588 hypothetical protein; 62.1 9.5 0.00021 39.2 4.1 21 332-352 1-21 (391)
337 PLN02852 ferredoxin-NADP+ redu 62.0 8.5 0.00018 42.3 3.9 41 325-375 20-60 (491)
338 TIGR01181 dTDP_gluc_dehyt dTDP 62.0 35 0.00076 33.0 7.9 78 333-422 1-84 (317)
339 PLN02463 lycopene beta cyclase 62.0 8.9 0.00019 41.4 4.1 21 332-352 29-49 (447)
340 PRK07251 pyridine nucleotide-d 61.9 10 0.00022 40.0 4.3 34 331-376 3-36 (438)
341 PRK08020 ubiF 2-octaprenyl-3-m 61.8 8.8 0.00019 39.3 3.8 33 331-375 5-37 (391)
342 PRK03515 ornithine carbamoyltr 61.8 56 0.0012 34.4 9.7 115 289-419 113-233 (336)
343 PTZ00318 NADH dehydrogenase-li 61.7 8.3 0.00018 40.7 3.7 37 328-376 7-43 (424)
344 TIGR02818 adh_III_F_hyde S-(hy 61.6 38 0.00082 34.8 8.4 35 329-374 184-218 (368)
345 KOG0743 AAA+-type ATPase [Post 61.5 13 0.00028 40.8 5.1 104 199-339 241-345 (457)
346 COG0654 UbiH 2-polyprenyl-6-me 61.3 10 0.00022 39.4 4.2 41 331-383 2-44 (387)
347 COG2072 TrkA Predicted flavopr 61.3 11 0.00023 40.6 4.5 36 330-376 7-42 (443)
348 PRK11749 dihydropyrimidine deh 61.3 10 0.00023 40.3 4.4 34 330-375 139-172 (457)
349 PRK08244 hypothetical protein; 61.2 9.7 0.00021 40.8 4.1 21 332-352 3-23 (493)
350 PRK06185 hypothetical protein; 61.2 9.7 0.00021 39.2 4.0 34 331-376 6-39 (407)
351 PF00743 FMO-like: Flavin-bind 61.0 9.8 0.00021 42.1 4.2 21 332-352 2-22 (531)
352 PRK01438 murD UDP-N-acetylmura 60.9 13 0.00029 39.6 5.1 28 325-352 10-37 (480)
353 KOG2012 Ubiquitin activating e 60.4 3.3 7.2E-05 48.3 0.5 130 294-469 411-552 (1013)
354 PRK14806 bifunctional cyclohex 60.3 28 0.00061 39.4 7.8 34 332-375 4-37 (735)
355 PRK07530 3-hydroxybutyryl-CoA 60.2 12 0.00026 37.4 4.4 32 332-375 5-36 (292)
356 PRK05993 short chain dehydroge 59.9 19 0.00041 35.1 5.6 32 332-375 5-37 (277)
357 PRK08243 4-hydroxybenzoate 3-m 59.9 11 0.00025 38.8 4.3 22 331-352 2-23 (392)
358 TIGR01789 lycopene_cycl lycope 59.8 14 0.0003 38.6 4.9 36 334-379 2-37 (370)
359 PF02423 OCD_Mu_crystall: Orni 59.6 12 0.00027 38.4 4.4 104 331-459 128-238 (313)
360 cd01968 Nitrogenase_NifE_I Nit 59.4 13 0.00027 39.4 4.6 86 319-420 275-365 (410)
361 PRK05714 2-octaprenyl-3-methyl 59.4 9.2 0.0002 39.5 3.5 32 332-375 3-34 (405)
362 PRK08850 2-octaprenyl-6-methox 59.4 12 0.00025 38.9 4.3 33 331-375 4-36 (405)
363 PRK12778 putative bifunctional 59.4 13 0.00029 42.3 5.1 35 329-375 429-463 (752)
364 PRK12266 glpD glycerol-3-phosp 59.4 11 0.00023 41.1 4.2 34 332-377 7-40 (508)
365 PRK07538 hypothetical protein; 59.4 11 0.00024 39.3 4.1 20 333-352 2-21 (413)
366 PRK07819 3-hydroxybutyryl-CoA 59.3 12 0.00027 37.7 4.3 22 332-353 6-27 (286)
367 PLN02676 polyamine oxidase 59.2 26 0.00055 38.2 7.0 22 331-352 26-47 (487)
368 TIGR01377 soxA_mon sarcosine o 59.1 12 0.00026 37.9 4.2 34 333-378 2-35 (380)
369 PRK06416 dihydrolipoamide dehy 59.1 11 0.00024 39.9 4.1 33 332-376 5-37 (462)
370 cd04951 GT1_WbdM_like This fam 59.0 81 0.0018 30.6 9.8 37 402-443 255-291 (360)
371 cd01493 APPBP1_RUB Ubiquitin a 58.9 8.7 0.00019 41.6 3.3 38 327-375 16-53 (425)
372 PRK12831 putative oxidoreducta 58.7 13 0.00027 40.2 4.5 34 330-375 139-172 (464)
373 KOG2018 Predicted dinucleotide 58.7 11 0.00024 40.0 3.9 40 327-377 70-109 (430)
374 TIGR01285 nifN nitrogenase mol 58.7 16 0.00034 39.3 5.2 97 319-442 299-395 (432)
375 PRK11259 solA N-methyltryptoph 58.6 13 0.00027 37.7 4.3 35 331-377 3-37 (376)
376 PLN02695 GDP-D-mannose-3',5'-e 58.5 34 0.00073 35.5 7.4 97 330-446 20-137 (370)
377 KOG2711 Glycerol-3-phosphate d 58.5 35 0.00076 36.5 7.5 97 332-438 22-130 (372)
378 TIGR00658 orni_carb_tr ornithi 58.4 84 0.0018 32.4 10.2 113 289-419 107-224 (304)
379 PRK07494 2-octaprenyl-6-methox 58.3 12 0.00026 38.2 4.1 34 331-376 7-40 (388)
380 PRK10262 thioredoxin reductase 58.3 8.9 0.00019 38.4 3.1 24 329-352 4-27 (321)
381 PRK09853 putative selenate red 58.1 12 0.00026 44.8 4.6 35 329-375 537-571 (1019)
382 PRK05866 short chain dehydroge 58.1 21 0.00045 35.6 5.6 38 326-375 35-73 (293)
383 TIGR00441 gmhA phosphoheptose 58.0 66 0.0014 29.4 8.5 37 411-449 79-117 (154)
384 PRK12779 putative bifunctional 58.0 13 0.00028 44.1 4.7 41 329-381 304-348 (944)
385 COG0476 ThiF Dinucleotide-util 57.9 9.3 0.0002 37.6 3.1 39 326-375 25-63 (254)
386 PRK07333 2-octaprenyl-6-methox 57.9 10 0.00022 38.8 3.5 20 333-352 3-22 (403)
387 PRK11445 putative oxidoreducta 57.7 12 0.00026 38.3 4.0 20 333-352 3-22 (351)
388 PLN02427 UDP-apiose/xylose syn 57.6 31 0.00067 35.5 6.9 83 322-421 5-96 (386)
389 PRK10015 oxidoreductase; Provi 57.4 12 0.00026 39.8 4.0 33 332-376 6-38 (429)
390 PRK13301 putative L-aspartate 57.3 26 0.00055 36.1 6.1 116 332-472 3-122 (267)
391 TIGR01373 soxB sarcosine oxida 56.9 17 0.00036 37.6 4.9 38 330-377 29-66 (407)
392 PRK12829 short chain dehydroge 56.9 37 0.00079 32.2 6.9 36 328-375 8-44 (264)
393 PRK13403 ketol-acid reductoiso 56.9 24 0.00053 37.3 6.1 64 327-416 12-76 (335)
394 cd05006 SIS_GmhA Phosphoheptos 56.7 66 0.0014 29.8 8.4 35 411-448 101-137 (177)
395 PRK06834 hypothetical protein; 56.7 14 0.0003 40.1 4.5 35 330-376 2-36 (488)
396 PF13407 Peripla_BP_4: Peripla 56.6 37 0.0008 32.0 6.8 156 153-339 52-217 (257)
397 cd01490 Ube1_repeat2 Ubiquitin 56.6 13 0.00029 40.5 4.2 37 333-375 1-37 (435)
398 TIGR03315 Se_ygfK putative sel 56.6 13 0.00027 44.6 4.4 33 331-375 537-569 (1012)
399 PRK12814 putative NADPH-depend 56.5 14 0.0003 41.8 4.5 34 330-375 192-225 (652)
400 PRK14694 putative mercuric red 56.5 14 0.00031 39.4 4.4 34 330-375 5-38 (468)
401 TIGR03088 stp2 sugar transfera 56.5 77 0.0017 31.8 9.4 37 402-443 265-301 (374)
402 PRK12562 ornithine carbamoyltr 56.4 91 0.002 32.9 10.2 113 289-419 113-233 (334)
403 PF12831 FAD_oxidored: FAD dep 56.4 14 0.0003 39.3 4.3 33 334-378 2-34 (428)
404 PRK05749 3-deoxy-D-manno-octul 56.2 35 0.00076 35.5 7.2 38 401-443 311-349 (425)
405 PRK08132 FAD-dependent oxidore 56.0 13 0.00028 40.5 4.1 22 331-352 23-44 (547)
406 PTZ00245 ubiquitin activating 55.9 11 0.00024 38.9 3.3 39 327-376 22-60 (287)
407 PRK01747 mnmC bifunctional tRN 55.9 15 0.00031 41.3 4.6 33 332-376 261-293 (662)
408 PRK07424 bifunctional sterol d 55.9 16 0.00035 39.2 4.7 55 294-375 156-211 (406)
409 TIGR02360 pbenz_hydroxyl 4-hyd 55.7 15 0.00032 38.2 4.3 21 332-352 3-23 (390)
410 PF06690 DUF1188: Protein of u 55.7 21 0.00045 36.3 5.1 90 326-450 39-129 (252)
411 TIGR03143 AhpF_homolog putativ 55.7 13 0.00028 40.9 4.1 32 333-376 6-37 (555)
412 PRK00711 D-amino acid dehydrog 55.6 15 0.00032 37.9 4.3 31 333-375 2-32 (416)
413 PF03486 HI0933_like: HI0933-l 55.6 12 0.00027 40.0 3.8 31 333-375 2-32 (409)
414 PRK05868 hypothetical protein; 55.4 15 0.00032 38.1 4.2 21 332-352 2-22 (372)
415 COG1064 AdhP Zn-dependent alco 55.3 90 0.0019 33.2 9.9 120 319-471 156-284 (339)
416 COG1063 Tdh Threonine dehydrog 55.3 22 0.00048 36.8 5.5 59 305-374 143-201 (350)
417 PF13241 NAD_binding_7: Putati 55.3 9.4 0.0002 32.7 2.3 37 328-376 4-40 (103)
418 COG1252 Ndh NADH dehydrogenase 55.2 12 0.00026 40.4 3.6 35 331-375 3-37 (405)
419 TIGR00031 UDP-GALP_mutase UDP- 55.2 15 0.00032 39.1 4.2 31 333-375 3-33 (377)
420 PRK13938 phosphoheptose isomer 55.0 91 0.002 30.2 9.3 37 411-449 113-151 (196)
421 PLN02240 UDP-glucose 4-epimera 54.9 25 0.00055 35.2 5.7 106 328-445 2-131 (352)
422 PRK11101 glpA sn-glycerol-3-ph 54.8 15 0.00032 40.5 4.3 34 331-376 6-39 (546)
423 TIGR02053 MerA mercuric reduct 54.8 15 0.00032 39.1 4.2 30 334-375 3-32 (463)
424 TIGR01350 lipoamide_DH dihydro 54.8 15 0.00033 38.8 4.2 30 333-374 3-32 (461)
425 TIGR01317 GOGAT_sm_gam glutama 54.7 16 0.00035 39.6 4.6 34 330-375 142-175 (485)
426 PRK06292 dihydrolipoamide dehy 54.6 16 0.00034 38.7 4.4 33 331-375 3-35 (460)
427 COG1748 LYS9 Saccharopine dehy 54.4 17 0.00036 39.2 4.5 118 332-472 2-124 (389)
428 PRK13369 glycerol-3-phosphate 54.4 14 0.0003 40.1 4.0 33 332-376 7-39 (502)
429 PRK06545 prephenate dehydrogen 54.3 38 0.00083 35.2 7.1 22 332-353 1-22 (359)
430 PRK12770 putative glutamate sy 54.3 19 0.00042 36.8 4.8 34 330-375 17-50 (352)
431 PRK06912 acoL dihydrolipoamide 54.2 15 0.00032 39.2 4.1 31 333-375 2-32 (458)
432 PRK11728 hydroxyglutarate oxid 54.2 17 0.00036 37.7 4.4 34 332-375 3-36 (393)
433 PRK06126 hypothetical protein; 54.1 16 0.00035 39.6 4.5 35 329-375 5-39 (545)
434 PRK08010 pyridine nucleotide-d 54.1 16 0.00034 38.6 4.2 32 332-375 4-35 (441)
435 PRK07190 hypothetical protein; 53.9 16 0.00035 39.6 4.4 34 331-376 5-38 (487)
436 PRK08294 phenol 2-monooxygenas 53.8 13 0.00028 41.9 3.7 35 330-375 31-65 (634)
437 PRK06138 short chain dehydroge 53.8 27 0.00059 32.8 5.4 36 328-375 2-38 (252)
438 PRK06183 mhpA 3-(3-hydroxyphen 53.7 15 0.00033 39.9 4.2 23 330-352 9-31 (538)
439 TIGR00670 asp_carb_tr aspartat 53.7 2.3E+02 0.0051 29.3 12.5 166 262-459 85-274 (301)
440 PRK04965 NADH:flavorubredoxin 53.5 11 0.00023 38.9 2.9 35 332-376 3-37 (377)
441 PRK06841 short chain dehydroge 53.5 21 0.00046 33.8 4.7 36 328-375 12-48 (255)
442 PLN02545 3-hydroxybutyryl-CoA 53.5 18 0.0004 36.1 4.4 32 332-375 5-36 (295)
443 PRK09987 dTDP-4-dehydrorhamnos 53.4 55 0.0012 32.6 7.8 86 333-446 2-104 (299)
444 PRK07589 ornithine cyclodeamin 53.4 71 0.0015 33.7 8.8 103 331-458 129-238 (346)
445 PRK07067 sorbitol dehydrogenas 53.3 13 0.00028 35.5 3.2 36 328-375 3-39 (257)
446 TIGR01179 galE UDP-glucose-4-e 53.2 56 0.0012 31.7 7.6 97 333-444 1-119 (328)
447 PRK06617 2-octaprenyl-6-methox 53.2 15 0.00032 37.9 3.8 31 333-375 3-33 (374)
448 cd08301 alcohol_DH_plants Plan 53.1 64 0.0014 32.9 8.4 35 329-374 186-220 (369)
449 PLN02568 polyamine oxidase 53.1 8.5 0.00018 42.6 2.1 24 330-353 4-27 (539)
450 PRK02102 ornithine carbamoyltr 53.1 1.2E+02 0.0027 31.9 10.5 112 289-419 114-232 (331)
451 PRK05976 dihydrolipoamide dehy 52.9 17 0.00038 38.7 4.4 33 331-375 4-36 (472)
452 TIGR03364 HpnW_proposed FAD de 52.8 16 0.00036 36.9 4.0 31 333-375 2-32 (365)
453 PRK11559 garR tartronate semia 52.7 57 0.0012 32.5 7.7 32 332-375 3-34 (296)
454 PRK00141 murD UDP-N-acetylmura 52.6 19 0.00041 38.9 4.6 24 329-352 13-36 (473)
455 PRK04284 ornithine carbamoyltr 52.5 96 0.0021 32.6 9.6 105 298-419 121-232 (332)
456 PLN02927 antheraxanthin epoxid 52.3 13 0.00029 42.5 3.5 36 328-375 78-113 (668)
457 COG3380 Predicted NAD/FAD-depe 52.1 18 0.00038 37.9 4.1 31 333-375 3-33 (331)
458 COG3349 Uncharacterized conser 52.0 11 0.00024 41.6 2.8 22 332-353 1-22 (485)
459 TIGR03736 PRTRC_ThiF PRTRC sys 51.9 22 0.00048 35.8 4.7 45 330-377 10-56 (244)
460 PRK08655 prephenate dehydrogen 51.9 69 0.0015 34.6 8.7 31 333-375 2-33 (437)
461 TIGR03589 PseB UDP-N-acetylglu 51.7 33 0.00072 34.7 6.0 106 329-446 2-125 (324)
462 PRK00536 speE spermidine synth 51.5 21 0.00046 36.3 4.5 83 332-433 74-157 (262)
463 COG0665 DadA Glycine/D-amino a 51.4 22 0.00048 35.9 4.7 37 330-378 3-39 (387)
464 PRK13394 3-hydroxybutyrate deh 51.4 48 0.001 31.4 6.7 36 328-375 4-40 (262)
465 PRK06392 homoserine dehydrogen 51.0 66 0.0014 33.6 8.2 82 333-420 2-90 (326)
466 COG1893 ApbA Ketopantoate redu 50.9 48 0.001 34.2 7.0 22 332-353 1-22 (307)
467 PRK09897 hypothetical protein; 50.9 20 0.00043 39.9 4.5 33 333-375 3-35 (534)
468 PRK08192 aspartate carbamoyltr 50.8 2.2E+02 0.0048 30.0 12.0 106 298-422 121-237 (338)
469 cd04949 GT1_gtfA_like This fam 50.7 88 0.0019 31.3 8.8 86 318-443 222-307 (372)
470 TIGR01318 gltD_gamma_fam gluta 50.6 23 0.0005 38.2 4.9 34 330-375 140-173 (467)
471 PRK14852 hypothetical protein; 50.6 14 0.0003 44.1 3.4 39 327-376 328-366 (989)
472 PF00732 GMC_oxred_N: GMC oxid 50.6 16 0.00035 35.9 3.4 35 334-379 3-37 (296)
473 PRK11154 fadJ multifunctional 50.6 1.9E+02 0.0042 33.2 12.4 41 408-450 413-453 (708)
474 PRK04690 murD UDP-N-acetylmura 50.4 20 0.00044 38.6 4.4 24 329-352 6-29 (468)
475 PTZ00188 adrenodoxin reductase 50.2 28 0.0006 38.8 5.4 34 331-375 39-72 (506)
476 PRK06182 short chain dehydroge 50.1 32 0.0007 33.2 5.4 74 330-422 2-85 (273)
477 PRK08219 short chain dehydroge 50.1 60 0.0013 29.9 7.0 71 332-422 4-82 (227)
478 PRK12809 putative oxidoreducta 49.9 22 0.00049 39.9 4.8 35 330-376 309-343 (639)
479 PRK09186 flagellin modificatio 49.9 16 0.00035 34.5 3.2 35 329-375 2-37 (256)
480 PRK11730 fadB multifunctional 49.8 18 0.00039 41.4 4.1 40 408-449 416-455 (715)
481 PRK05249 soluble pyridine nucl 49.7 23 0.00049 37.5 4.6 34 331-376 5-38 (461)
482 PLN02342 ornithine carbamoyltr 49.6 1.3E+02 0.0028 32.0 10.1 132 262-419 130-267 (348)
483 PRK02472 murD UDP-N-acetylmura 49.4 24 0.00052 37.1 4.7 24 329-352 3-26 (447)
484 PF02558 ApbA: Ketopantoate re 49.0 28 0.00062 30.8 4.5 31 334-376 1-31 (151)
485 PTZ00367 squalene epoxidase; P 49.0 46 0.00099 37.3 7.0 41 323-375 22-65 (567)
486 PF04320 DUF469: Protein with 48.8 16 0.00034 32.5 2.7 33 253-285 27-62 (101)
487 PRK12775 putative trifunctiona 48.6 21 0.00046 42.6 4.5 34 330-375 429-462 (1006)
488 PLN02985 squalene monooxygenas 48.6 25 0.00054 38.7 4.8 34 330-375 42-75 (514)
489 cd05188 MDR Medium chain reduc 48.5 47 0.001 31.0 6.1 109 318-449 122-235 (271)
490 PRK06115 dihydrolipoamide dehy 48.4 23 0.00051 37.9 4.5 32 332-375 4-35 (466)
491 PF13738 Pyr_redox_3: Pyridine 48.4 20 0.00043 32.9 3.5 25 328-352 164-188 (203)
492 PRK07208 hypothetical protein; 48.3 22 0.00049 37.6 4.3 23 330-352 3-25 (479)
493 PRK13748 putative mercuric red 48.2 20 0.00044 39.0 4.0 33 331-375 98-130 (561)
494 TIGR00274 N-acetylmuramic acid 48.0 30 0.00065 35.5 5.0 38 411-450 126-165 (291)
495 PRK07535 methyltetrahydrofolat 47.8 88 0.0019 31.6 8.2 46 264-311 80-130 (261)
496 TIGR02733 desat_CrtD C-3',4' d 47.7 25 0.00054 37.6 4.6 35 331-377 1-35 (492)
497 PF01408 GFO_IDH_MocA: Oxidore 47.6 27 0.0006 29.4 4.0 91 332-443 1-91 (120)
498 cd05279 Zn_ADH1 Liver alcohol 47.6 2.4E+02 0.0051 28.8 11.5 24 327-350 180-203 (365)
499 TIGR01408 Ube1 ubiquitin-activ 47.5 16 0.00035 43.7 3.3 39 327-376 20-58 (1008)
500 PRK00048 dihydrodipicolinate r 47.5 1.2E+02 0.0025 30.3 9.0 88 332-444 2-90 (257)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.9e-181 Score=1404.16 Aligned_cols=430 Identities=64% Similarity=1.025 Sum_probs=425.9
Q ss_pred ccccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHH
Q 011816 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (477)
Q Consensus 46 ~~~~~~G~~~l~~p~~NkG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 125 (477)
..+..+|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+++++++||+||+||++||+|||+|||+
T Consensus 25 ~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~rNerLfY~ 104 (582)
T KOG1257|consen 25 VESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDRNERLFYR 104 (582)
T ss_pred cccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccc
Q 011816 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMG 205 (477)
Q Consensus 126 ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~gmg 205 (477)
++++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||+|||||||||++|||
T Consensus 105 ~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~Gmg 184 (582)
T KOG1257|consen 105 LLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMG 184 (582)
T ss_pred HHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceecccccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 011816 206 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 285 (477)
Q Consensus 206 I~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~ 285 (477)
||+||++||||||||+|++|||||||||||||+||+||+|+|+||+|++|++|++|+||||+||.++|||+++||||||+
T Consensus 185 IpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~ 264 (582)
T KOG1257|consen 185 IPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFA 264 (582)
T ss_pred ceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhh
Q 011816 286 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (477)
Q Consensus 286 ~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA 365 (477)
++|||++|+|||+++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||+.+|+++ |+|+|||
T Consensus 265 ~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~-Gl~~eeA 343 (582)
T KOG1257|consen 265 NHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKE-GLSEEEA 343 (582)
T ss_pred chhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHc-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 9999999
Q ss_pred cCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 366 ~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
++||||+|++|||+++|+.+++++|++||++++++++|+|||+.||||||||+|+++|+|||||||+|+++|||||||||
T Consensus 344 ~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFal 423 (582)
T KOG1257|consen 344 RKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFAL 423 (582)
T ss_pred hccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEec
Confidence 99999999999999999867999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 446 SNPTSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 446 SNPt~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
||||+++||||||||+||+|||||||||||=
T Consensus 424 SNPT~~aECtae~ay~~t~Gr~ifaSGSPF~ 454 (582)
T KOG1257|consen 424 SNPTSKAECTAEQAYKWTKGRAIFASGSPFP 454 (582)
T ss_pred CCCccccccCHHHHhhhcCCcEEEecCCCCC
Confidence 9999999999999999999999999999983
No 2
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=8e-174 Score=1377.42 Aligned_cols=427 Identities=73% Similarity=1.144 Sum_probs=421.9
Q ss_pred cccccccccCCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHHHhh
Q 011816 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (477)
Q Consensus 49 ~~~G~~~l~~p~~NkG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~ 128 (477)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||++||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccccch
Q 011816 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (477)
Q Consensus 129 ~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~gmgI~~ 208 (477)
+|++|+||||||||||+||++||++||+|+|||||++|+|+++++++|||.++|+|||||||||||||||+|++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCccc
Q 011816 209 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 288 (477)
Q Consensus 209 GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~ 288 (477)
||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCe
Q 011816 289 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (477)
Q Consensus 289 af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (477)
||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 369 i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
||+||++|||+++|.++|+++|++||++.++..+|+|||+++|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987777899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEcCCCC
Q 011816 449 TSQSECTAEEAYTWSKVQTIILQHFPG 475 (477)
Q Consensus 449 t~~~E~tpe~A~~~t~G~aifAsGsp~ 475 (477)
|++|||+|||||+||+|+|||||||||
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf 465 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPF 465 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCC
Confidence 999999999999999999999999998
No 3
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-173 Score=1371.31 Aligned_cols=426 Identities=48% Similarity=0.837 Sum_probs=418.4
Q ss_pred cccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHHH
Q 011816 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (477)
Q Consensus 47 ~~~~~G~~~l~~p~~NkG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~l 126 (477)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.|+++++++|+||+||++||+|||+|||++
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCcccc
Q 011816 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (477)
Q Consensus 127 l~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~gmgI 206 (477)
+++|+||+||||||||||+|||+||++||+|+|||+|++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCc
Q 011816 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (477)
Q Consensus 207 ~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~ 286 (477)
||||++|||+||||||++|||||||+|||||+||+||+|+|+||||++|++|++|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhc
Q 011816 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (477)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~ 366 (477)
+|||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred CeEEEEccCCcccCCCCCCCchhchhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 011816 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (477)
Q Consensus 367 ~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~---------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (477)
++|||||++|||+++|.+ |+++|++||++.++. .+|+|||+++|||||||+|+++|+|||||||+|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999976 999999999975442 6899999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCC
Q 011816 438 EKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPG 475 (477)
Q Consensus 438 erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~ 475 (477)
+|||||||||||++|||||||||+||+|||||||||||
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf 446 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPF 446 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCC
Confidence 99999999999999999999999999999999999997
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.4e-173 Score=1369.01 Aligned_cols=431 Identities=49% Similarity=0.817 Sum_probs=421.1
Q ss_pred ccccccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhh
Q 011816 44 PWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLF 123 (477)
Q Consensus 44 ~~~~~~~~G~~~l~~p~~NkG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lf 123 (477)
+...+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.|+++++++|+||+||++||+|||+||
T Consensus 11 ~~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lf 90 (559)
T PTZ00317 11 EKVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLF 90 (559)
T ss_pred cccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHH
Confidence 33456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc
Q 011816 124 YKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG 203 (477)
Q Consensus 124 y~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~g 203 (477)
|+++.+|+||+||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++||||||||||||||+|++|
T Consensus 91 y~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~G 170 (559)
T PTZ00317 91 YALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANG 170 (559)
T ss_pred HHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeec
Q 011816 204 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 283 (477)
Q Consensus 204 mgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~ED 283 (477)
||||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++|++|+||||++|+.+| |+++|||||
T Consensus 171 m~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~ED 249 (559)
T PTZ00317 171 MGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFED 249 (559)
T ss_pred ccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCcccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChh
Q 011816 284 FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 363 (477)
Q Consensus 284 f~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~e 363 (477)
|+++|||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|
T Consensus 250 f~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~e 328 (559)
T PTZ00317 250 FSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTRE 328 (559)
T ss_pred cCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 599999
Q ss_pred hhcCeEEEEccCCcccCCCCCCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCC
Q 011816 364 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 438 (477)
Q Consensus 364 eA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~--~~---~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~e 438 (477)
||++||||||++|||+++|.+.|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+
T Consensus 329 eA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~ 408 (559)
T PTZ00317 329 EALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVE 408 (559)
T ss_pred HhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC
Confidence 9999999999999999999766999999999963 33 569999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 439 KPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 439 rPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
|||||||||||++|||||||||+||+|||||||||||-
T Consensus 409 rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~ 446 (559)
T PTZ00317 409 RPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFP 446 (559)
T ss_pred CCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCC
Confidence 99999999999999999999999999999999999973
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=8.4e-98 Score=767.32 Aligned_cols=323 Identities=36% Similarity=0.557 Sum_probs=295.2
Q ss_pred cccHHHHHHHHHHHhhcCCC-chhHHHHhhhhhhhhhhhhHHHhhhcccccCCcccccchHHHHHHHhhhhcCCCccccc
Q 011816 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (477)
Q Consensus 85 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s 163 (477)
|+|+| |.+|++.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.++.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999887 99999999 899999999999999999999999999999999998877774
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-CccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccC
Q 011816 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGC-QGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242 (477)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~gmgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~D 242 (477)
.++.+++.|||||||||||||||+|+ .||||||||++|||+||||| +||||||+||+||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 35667789999999999999999995 68999999999999999999 9999999999877
Q ss_pred cccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHc--CCCceeccCCCchHHHHHHHHHH
Q 011816 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFNDDIQGTASVVLAGVVA 320 (477)
Q Consensus 243 p~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr--~~~~~FnDDiQGTaaV~LAgll~ 320 (477)
+++||++++++||+ |++||++.|+||.+++++| .+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999999 9999999999999888665 68999999999999999999999
Q ss_pred HHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC-CCchhchhhcc-ccC
Q 011816 321 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHE 398 (477)
Q Consensus 321 Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~-~l~~~k~~~a~-~~~ 398 (477)
|||++||+|+|+||||+|||+||+||+++|..++++ .+|||+|||+|+|+++|.+ .++++|..+|. ...
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999987443 3899999999999999976 36777777775 444
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCCC
Q 011816 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGFN 477 (477)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~~~ 477 (477)
...+ .+++. +||||||+|++ |+||+|+|++|+ ++|||||||||| ||++||||.+|++|++|+|||||||.
T Consensus 260 ~~~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrsd~P 329 (432)
T COG0281 260 ERTL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGRSDYP 329 (432)
T ss_pred cccc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCCCCc
Confidence 4443 44555 59999999998 899999999998 569999999999 99999999999999999999999983
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=7.6e-91 Score=762.95 Aligned_cols=282 Identities=29% Similarity=0.503 Sum_probs=259.3
Q ss_pred hhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc-ccc
Q 011816 128 IDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGI 206 (477)
Q Consensus 128 ~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~g-mgI 206 (477)
+.+. ++|+++|||||+++|++ |+++|+++| .|+.++|.|+|||||||||||||+|++| |||
T Consensus 31 ~~~~-~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pv 92 (764)
T PRK12861 31 LVTQ-RDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPV 92 (764)
T ss_pred cCCh-HHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccch
Confidence 3344 55999999999999999 799999886 3556667899999999999999999997 999
Q ss_pred chhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCc
Q 011816 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (477)
Q Consensus 207 ~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~ 286 (477)
||||++|||+||||| +||||+| | +|| ++|| |||++++++||+ ||||||++
T Consensus 93 meGK~~L~~~~agid---~~di~~~----~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~ 142 (764)
T PRK12861 93 MEGKAVLFKKFAGID---VFDIEIN----E----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKA 142 (764)
T ss_pred HHHHHHHHhhccCCC---ccccccC----C----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccC
Confidence 999999999999999 6665555 4 467 6888 999999999988 99999999
Q ss_pred ccHHHHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhh
Q 011816 287 HNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (477)
Q Consensus 287 ~~af~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~ee 364 (477)
||||+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|++++
T Consensus 143 p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~- 216 (764)
T PRK12861 143 PECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE- 216 (764)
T ss_pred chHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh-
Confidence 999999999998 799999999999999999999999999999999999999999999999999975 498754
Q ss_pred hcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 365 A~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
||||||++|||+++|.+.|+++|++||++. +..+|.|||++ ||||||+|+ +|+||+|+|++|+ ++|||||
T Consensus 217 ---~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFa 286 (764)
T PRK12861 217 ---NIWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILA 286 (764)
T ss_pred ---hEEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEE
Confidence 999999999999999766999999999985 45799999998 899999998 8899999999998 5999999
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 445 LSNPTSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 445 LSNPt~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
||||| |||+||||++ |+|++|||||+++|
T Consensus 287 LsNPt--pE~~pe~a~~-~~g~aivaTGrs~~ 315 (764)
T PRK12861 287 LANPT--PEIFPELAHA-TRDDVVIATGRSDY 315 (764)
T ss_pred CCCCC--ccCCHHHHHh-cCCCEEEEeCCcCC
Confidence 99999 8999999987 99999999999997
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1.3e-89 Score=756.25 Aligned_cols=281 Identities=27% Similarity=0.451 Sum_probs=258.1
Q ss_pred hhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc-ccc
Q 011816 128 IDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGI 206 (477)
Q Consensus 128 ~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~g-mgI 206 (477)
+.+. ++|+++|||||+++|++ |+++|+++| .|+.++|.|||||||||||||||+|++| |||
T Consensus 35 ~~~~-~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv 96 (763)
T PRK12862 35 LANQ-RDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPV 96 (763)
T ss_pred CCCH-HHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccch
Confidence 3444 55999999999999999 789998888 3677778999999999999999999997 999
Q ss_pred chhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecCC
Q 011816 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFA 285 (477)
Q Consensus 207 ~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIq~EDf~ 285 (477)
||||++|||+||||| ++|||+| |+ || ||||++|+..| |+ ..||||||+
T Consensus 97 ~egK~~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~ 145 (763)
T PRK12862 97 MEGKAVLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIK 145 (763)
T ss_pred HHHHHHHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeeccc
Confidence 999999999999999 7777666 33 55 77888888777 66 679999999
Q ss_pred cccHHHHHHHHcCC--CceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChh
Q 011816 286 NHNAFELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 363 (477)
Q Consensus 286 ~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~e 363 (477)
+||||+||+|||++ ||||||||||||+|+||||+||+|++||+|+|+||||+|||+||+|||+||+. .|+++
T Consensus 146 ~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~- 219 (763)
T PRK12862 146 APECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR- 219 (763)
T ss_pred CchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc-
Confidence 99999999999986 99999999999999999999999999999999999999999999999999987 48873
Q ss_pred hhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 364 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 364 eA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
+||||||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|+|++|+ +|||||
T Consensus 220 ---~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piif 289 (763)
T PRK12862 220 ---ENIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIF 289 (763)
T ss_pred ---ccEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEE
Confidence 7999999999999999766999999999985 45799999999 999999999 8999999999998 899999
Q ss_pred EcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 444 ALSNPTSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 444 aLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
|||||| |||+|||||+||+| +|||||+++|
T Consensus 290 alsNP~--~E~~p~~a~~~~~~-~i~atGrs~~ 319 (763)
T PRK12862 290 ALANPT--PEILPEEARAVRPD-AIIATGRSDY 319 (763)
T ss_pred eCCCCc--ccCCHHHHHHhcCC-EEEEECCcCC
Confidence 999999 89999999999998 9999999987
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=4.5e-89 Score=749.14 Aligned_cols=277 Identities=30% Similarity=0.509 Sum_probs=256.4
Q ss_pred ccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCC-ccccchhhH
Q 011816 133 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGKL 211 (477)
Q Consensus 133 e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-gmgI~~GKl 211 (477)
++|+++|||||+++|++ |+++|+++| ++.+|| |.|+|||||||||||||+|++ ||||||||+
T Consensus 31 ~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK~ 93 (752)
T PRK07232 31 RDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGKG 93 (752)
T ss_pred hhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHHH
Confidence 55999999999999997 799999999 555554 679999999999999999999 799999999
Q ss_pred HHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecCCcccHH
Q 011816 212 ALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNAF 290 (477)
Q Consensus 212 ~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIq~EDf~~~~af 290 (477)
+|||+||||| ++|||+| |+ | +||||++|+..| |. .+||||||++||||
T Consensus 94 ~l~~~~~gid---~~~i~~~----~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~f 142 (752)
T PRK07232 94 VLFKKFAGID---VFDIEVD----EE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPECF 142 (752)
T ss_pred HHHHhhcCCC---ccccccC----CC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchHH
Confidence 9999999999 7777666 33 2 799999999988 65 48999999999999
Q ss_pred HHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCe
Q 011816 291 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (477)
Q Consensus 291 ~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (477)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++|
T Consensus 143 ~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~~ 213 (752)
T PRK07232 143 YIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KEN 213 (752)
T ss_pred HHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----ccc
Confidence 99999997 489999999999999999999999999999999999999999999999999986 4887 689
Q ss_pred EEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 369 i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
|||||++|||+++|.+.|+++|++||++ .+..+|+|+|++ ||||||+|+ +|+||+|+|++|+ ++|||||||||
T Consensus 214 i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP 286 (752)
T PRK07232 214 IIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALANP 286 (752)
T ss_pred EEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCCC
Confidence 9999999999999966699999999998 455799999998 999999999 8899999999998 79999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 449 TSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 449 t~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
| |||+||||++||+| +|||||+++|
T Consensus 287 ~--~E~~p~~a~~~~~~-~i~atGrs~~ 311 (752)
T PRK07232 287 D--PEITPEEAKAVRPD-AIIATGRSDY 311 (752)
T ss_pred C--ccCCHHHHHHhcCC-EEEEECCcCC
Confidence 9 89999999999999 9999999987
No 9
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1.1e-83 Score=604.09 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.2
Q ss_pred hhhhhhhhHHHhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeec
Q 011816 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (477)
Q Consensus 116 ~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (477)
|++||+|||+++.+|++|+|||+||||||+||++||++|++|+|+|+|++|+|+|+++|+|||.++|+||||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCC
Q 011816 196 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 275 (477)
Q Consensus 196 LGDlG~~gmgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp 275 (477)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||+||+.+|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCcccHHHHHHHHc
Q 011816 276 KVLIQFEDFANHNAFELLAKYG 297 (477)
Q Consensus 276 ~~lIq~EDf~~~~af~iL~ryr 297 (477)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.7e-63 Score=489.23 Aligned_cols=167 Identities=50% Similarity=0.829 Sum_probs=151.2
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC
Q 011816 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (477)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l 386 (477)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|++||++||||+|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~~-l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRED-L 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTSS-H
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCcc-C
Confidence 899999999999999999999999999999999999999999999999985 99999999999999999999999954 9
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 387 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 387 ~~~k~~~a~~~~~~---~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
+++|++||++.++. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCC
Q 011816 464 KVQTIILQHFPG 475 (477)
Q Consensus 464 ~G~aifAsGsp~ 475 (477)
+|+|||||||||
T Consensus 159 ~g~ai~AtGSpf 170 (255)
T PF03949_consen 159 DGRAIFATGSPF 170 (255)
T ss_dssp TSEEEEEESS--
T ss_pred CceEEEecCCcc
Confidence 999999999998
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.2e-62 Score=482.80 Aligned_cols=169 Identities=48% Similarity=0.639 Sum_probs=163.3
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC
Q 011816 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (477)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l 386 (477)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||++|||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999987 599999999999999999999999976 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 387 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 387 ~~~k~~---~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
+++|++ |+++..+..+|+|+|+.+|||||||+|+++|+||+|+|++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCCCC
Q 011816 464 KVQTIILQHFPGFN 477 (477)
Q Consensus 464 ~G~aifAsGsp~~~ 477 (477)
+|||||||||||+.
T Consensus 159 ~G~ai~AtGspf~p 172 (254)
T cd00762 159 EGRAIFASGSPFHP 172 (254)
T ss_pred CCCEEEEECCCCCC
Confidence 99999999999973
No 12
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.5e-61 Score=480.77 Aligned_cols=167 Identities=55% Similarity=0.870 Sum_probs=162.3
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC
Q 011816 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (477)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l 386 (477)
|||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||++||||+|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999988 599999999999999999999999976 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC
Q 011816 387 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 464 (477)
Q Consensus 387 ~~~k~~~a~~~~--~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~ 464 (477)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||+|||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999766 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCC
Q 011816 465 VQTIILQHFPG 475 (477)
Q Consensus 465 G~aifAsGsp~ 475 (477)
|+|||||||||
T Consensus 159 G~ai~ATGsPf 169 (279)
T cd05312 159 GRALFASGSPF 169 (279)
T ss_pred CCEEEEeCCCC
Confidence 99999999998
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=3.2e-33 Score=269.90 Aligned_cols=151 Identities=38% Similarity=0.525 Sum_probs=136.3
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC
Q 011816 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (477)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l 386 (477)
|||||+|++||+++|++..|++++|+||||+|||+||.+||++|.. .|++ +++||++|++|+++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3876 679999999999999997668
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 387 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 387 ~~~k~~~a~~~--~~~-~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
.++|++|++.. ... .+|.+++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 222 378899986 999999999 7899999999997 899999999999 89999999998
Q ss_pred CCcEEEEcCCCCC
Q 011816 464 KVQTIILQHFPGF 476 (477)
Q Consensus 464 ~G~aifAsGsp~~ 476 (477)
|..|||||..++
T Consensus 143 -ga~i~a~G~~~~ 154 (226)
T cd05311 143 -GADIVATGRSDF 154 (226)
T ss_pred -CCcEEEeCCCCC
Confidence 555999997654
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.91 E-value=1.6e-08 Score=83.88 Aligned_cols=86 Identities=36% Similarity=0.483 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999998763 2 257999988
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
|+||++++.++.|+++. |+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~~---~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEEA---TAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHHH---HHhcCCCCEEEecC
Confidence 99999999999888884 44446899999885
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.01 E-value=0.00022 Score=76.19 Aligned_cols=185 Identities=19% Similarity=0.256 Sum_probs=118.7
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHH---------------------HHHHc-------CCCcee
Q 011816 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 303 (477)
Q Consensus 252 R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~i---------------------L~ryr-------~~~~~F 303 (477)
..+-++|...+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|||
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 345678888777765 345566655 5554444333 13453 369999
Q ss_pred c----------cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEc
Q 011816 304 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (477)
Q Consensus 304 n----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (477)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+.. .|. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~-----~Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRG-----LGA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEc
Confidence 8 6778998777666654 34667899999999999999999998864 253 688888
Q ss_pred cCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC----
Q 011816 374 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT---- 449 (477)
Q Consensus 374 ~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt---- 449 (477)
.+ ..|. +...+ ..-...++.++++. +|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 243 ~d----p~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d~Eid 306 (425)
T PRK05476 243 VD----PICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFDNEID 306 (425)
T ss_pred CC----chhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCCCccC
Confidence 63 1111 11111 11112368888886 99999988877789999999996 445666555544
Q ss_pred ---------CCCCCCHH-HHhcccCCcEEE--EcCCC
Q 011816 450 ---------SQSECTAE-EAYTWSKVQTII--LQHFP 474 (477)
Q Consensus 450 ---------~~~E~tpe-~A~~~t~G~aif--AsGsp 474 (477)
+.-|+.|. +.|++.+|+-|+ |-|++
T Consensus 307 ~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lLa~Grl 343 (425)
T PRK05476 307 VAALEELAVKWREIKPQVDEYTLPDGKRIILLAEGRL 343 (425)
T ss_pred hHHHhhcCcceeecCCCceEEEeCCCCEEEEEeCCcc
Confidence 12233333 345566776654 55654
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.61 E-value=0.00028 Score=74.52 Aligned_cols=126 Identities=24% Similarity=0.362 Sum_probs=85.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
.+..+|+.+++-.|.+..| ++.+.+++|+|+|..|..++..+.. .|+ .+|+++|+.. .| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777787766777665 4888999999999999999998864 253 5788888731 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEEcCCCCCCCCCCHH
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPTSQSECTAE 457 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt~~~E~tpe 457 (477)
...+.+....-...++.+++.. +|++|-+++.+ ..+++++++.+.....+| +|+-+|+|- ++.|+
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr---did~~ 285 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR---DVDPA 285 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC---CCChh
Confidence 1111111111112467788876 99999987544 578999999875432356 899999997 66664
No 17
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.49 E-value=0.0017 Score=69.13 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=88.8
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCe
Q 011816 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (477)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (477)
.+|+|+ |.-.||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 788887 777999977766655 456777899999999999999999998764 253 5
Q ss_pred EEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 369 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 369 i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
++++|.+- .| ...|. ..-...++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887631 11 11111 11112357888875 89999888877888888888886 5667776776
Q ss_pred CCCCCCCCHHH
Q 011816 448 PTSQSECTAEE 458 (477)
Q Consensus 448 Pt~~~E~tpe~ 458 (477)
.. .|+..++
T Consensus 284 ~~--~eId~~a 292 (406)
T TIGR00936 284 FD--VEIDVKA 292 (406)
T ss_pred CC--ceeCHHH
Confidence 65 4555443
No 18
>PLN02477 glutamate dehydrogenase
Probab=97.46 E-value=0.0066 Score=64.77 Aligned_cols=186 Identities=22% Similarity=0.230 Sum_probs=126.8
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH--HHHHHHHcC----CCcee----------ccCCCchHHHHHH
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT----THLVF----------NDDIQGTASVVLA 316 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr~----~~~~F----------nDDiQGTaaV~LA 316 (477)
.+..|-..+...|+.++.+..||..=|-=+|++..-. --+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 4556778889999999999998854455566654311 124466653 11111 2333458888888
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccCCcccCCCCCCCchhch-hhc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 394 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k~-~~a 394 (477)
++-.+++..|.+|+..||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|+.... |+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNENG--LDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCCC--CCHHHHHHHH
Confidence 8889999999999999999999999999999998653 53 566 8999999998753 443221 111
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 395 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 395 ~~~------~~--~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
+.. +. .-+-.+.+. .+.||||=+.- ++.+|++.+..+ .-.||.--+| |+ -+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 110 00 012233333 37999996654 669999999987 6889999999 66 354 456655
No 19
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.41 E-value=0.0021 Score=68.55 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=93.3
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCe
Q 011816 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (477)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (477)
.+|+|+ |..+||+--++-+++. .++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 7779999988877765 56778999999999999999999998754 353 5
Q ss_pred EEEEccCCcccCCCCCCCchhchhhcccc-CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 369 i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
++++|.+ .. +...|+.. -...++.++++. .|++|-+++..++|+++.++.|. +.-+|.-.+.
T Consensus 228 ViV~d~d----~~--------R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----PI--------CALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----hh--------hHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 11 22233321 111246788875 89999999888889999899886 5667766777
Q ss_pred CCCCCCCCHHHHh
Q 011816 448 PTSQSECTAEEAY 460 (477)
Q Consensus 448 Pt~~~E~tpe~A~ 460 (477)
+. .|+.+.+..
T Consensus 291 ~~--~eId~~~L~ 301 (413)
T cd00401 291 FD--VEIDVKGLK 301 (413)
T ss_pred CC--CccCHHHHH
Confidence 64 688887754
No 20
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.40 E-value=0.0022 Score=62.59 Aligned_cols=135 Identities=20% Similarity=0.220 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. . ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 53 578899999988886 3 4332
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 011816 390 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (477)
Q Consensus 390 -k~~~a~~~~~~~~-------L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~ 460 (477)
...+.+....... =.+.+-.++.||||=++. .+.+|++..+.+ .-++|..-+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCC-H--HHHHHH
Confidence 2222221110000 013344568999997777 559999999998 4789998888 884 2 466666
Q ss_pred cccCCcE
Q 011816 461 TWSKVQT 467 (477)
Q Consensus 461 ~~t~G~a 467 (477)
+ .+|-.
T Consensus 140 ~-~~Gi~ 145 (217)
T cd05211 140 H-ERGIV 145 (217)
T ss_pred H-HCCcE
Confidence 5 35633
No 21
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.34 E-value=0.001 Score=67.54 Aligned_cols=136 Identities=23% Similarity=0.356 Sum_probs=86.9
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhc
Q 011816 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (477)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~ 366 (477)
.+||++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..+++.+... | .
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g------~ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----G------V 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----C------C
Confidence 46777777776544333 34456666666666665555 8899999999999999999888642 3 2
Q ss_pred CeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEE
Q 011816 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 444 (477)
Q Consensus 367 ~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFa 444 (477)
++|+++|+. ..| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 579998873 221 111122221111112357788876 8999999887754 66666654322 2347889
Q ss_pred cCCCC
Q 011816 445 LSNPT 449 (477)
Q Consensus 445 LSNPt 449 (477)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 22
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.32 E-value=0.011 Score=63.64 Aligned_cols=189 Identities=16% Similarity=0.159 Sum_probs=129.2
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCccc--HHHHHHHHcC---CC-------cee----ccCCCchHHHHHH
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGT---TH-------LVF----NDDIQGTASVVLA 316 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~iL~ryr~---~~-------~~F----nDDiQGTaaV~LA 316 (477)
.+..|-..|...|+.++.+.+||..=|-=+|++..- ---+.+.|+. .. |+. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 455678889999999999999997777777776421 1225567652 11 211 2334567777888
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEE-ccCCcccCCCCCCCchh-----c
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----K 390 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv-D~~GLi~~~r~~~l~~~-----k 390 (477)
++..+++..|.+|++.||+|.|-|..|...|++|.. .|. +++-+ |++|-|+.... |+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHHH
Confidence 888999999999999999999999999999999964 353 56655 99999998753 4332 1
Q ss_pred h-------hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 391 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 391 ~-------~~a~~-~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
. .|... ....-+- +.+-.++.||||=++. .+.+|++-...+-. +.-.||.=-+| |+ -+| +++.+.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0001112 2234567999997666 67999999999843 35679999998 77 244 455554
No 23
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.29 E-value=0.001 Score=70.37 Aligned_cols=125 Identities=26% Similarity=0.415 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
+..+|+.+|+--|.+..| ++.+.+++|+|||..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666655544444 6888999999999999999988854 253 578988774 122 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcC--CCCcEEEEcCCCCCCCCCCHH
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASF--NEKPLILALSNPTSQSECTAE 457 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~--~erPIIFaLSNPt~~~E~tpe 457 (477)
..+.|........++.+++.. +|++|-+++.+ ..+++++++.+.+. ....+|+=||+|- ++.|+
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr---did~~ 288 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR---DIEPE 288 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC---CCccc
Confidence 111221111112456777775 99999988654 47899999997532 2346889999997 55553
No 24
>PLN02494 adenosylhomocysteinase
Probab=97.24 E-value=0.0037 Score=67.81 Aligned_cols=131 Identities=17% Similarity=0.269 Sum_probs=94.1
Q ss_pred CCceec----------cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCe
Q 011816 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (477)
Q Consensus 299 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (477)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 557899888888877 557778999999999999999999999853 253 5
Q ss_pred EEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 369 i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
++++|.+.. + . +.....-| ...++.|+++. +|++|=+++..++++++.++.|. +..++.-.+.+
T Consensus 280 VIV~e~dp~----r-~-~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----C-A-LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----h-h-HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 887876411 1 0 11111111 11258888876 99999877777788999999996 67788888887
Q ss_pred CCCCCCCHHHHhcc
Q 011816 449 TSQSECTAEEAYTW 462 (477)
Q Consensus 449 t~~~E~tpe~A~~~ 462 (477)
. .|+.-++..++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 6 67777654443
No 25
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.13 E-value=0.0039 Score=58.75 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=70.1
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
.+.+-.++-...+|++.+++++|+|. +|..+|+.|.. .|. ++++++++
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------- 77 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------- 77 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-------------------
Confidence 33344555556789999999999998 59989988865 242 58888864
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 395 HEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 395 ~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
..+|.+.++. +|++|..++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 -----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788887 99999999988899999764 357999999987
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.09 E-value=0.0043 Score=62.81 Aligned_cols=138 Identities=17% Similarity=0.248 Sum_probs=93.1
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
..+.+++=.++.-+++..+..|.+.+++|+|+|.+|.++|+.+... |. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHH
Confidence 4555666667778888888899999999999999999999998652 53 688888741 1 111
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcE
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQT 467 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~a 467 (477)
..+ .+....-...+|.+.++. .|++|=+. +.+.++++.++.|. +..+|+=+|..- -++..+.|.+ -.-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 111 000011112457788876 99999755 34578999998885 567888776422 3666765544 34578
Q ss_pred EEEcCCC
Q 011816 468 IILQHFP 474 (477)
Q Consensus 468 ifAsGsp 474 (477)
+.|-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888877
No 27
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.08 E-value=0.0054 Score=60.21 Aligned_cols=132 Identities=25% Similarity=0.294 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++.... |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577777888888899999999999999999999999999998653 53 33559999999988753 43
Q ss_pred hhch-hhccccC------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHH
Q 011816 388 HFKK-PWAHEHE------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 457 (477)
Q Consensus 388 ~~k~-~~a~~~~------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe 457 (477)
.... .+.+... .. -+-.+ +-..+.||||=++. ++..|++.+..+ .-++|.--+| |.+ +| ++
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a~-~~~i~~~~~~~l----~a~~I~egAN~~~t-~~--a~ 145 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAAL-ENQITADNADRI----KAKIIVEAANGPTT-PE--AD 145 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecCc-cCccCHHHHhhc----eeeEEEeCCCCCCC-HH--HH
Confidence 2221 1111100 00 12223 33458999998774 679999999999 4889999999 663 44 44
Q ss_pred HHhc
Q 011816 458 EAYT 461 (477)
Q Consensus 458 ~A~~ 461 (477)
+.++
T Consensus 146 ~~L~ 149 (227)
T cd01076 146 EILH 149 (227)
T ss_pred HHHH
Confidence 5554
No 28
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.07 E-value=0.039 Score=59.65 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=128.7
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH--HHHHHHHcC----CCceec----------cCCCchHHHHHH
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT----THLVFN----------DDIQGTASVVLA 316 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr~----~~~~Fn----------DDiQGTaaV~LA 316 (477)
.+..|-..|.-.||..+.+..||+.=|==.|++..-. --+.+.|+. ...++. +--..||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 4555788899999999998889977666677763221 124566653 222321 112238888888
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchh----
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP---- 392 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~---- 392 (477)
++-.+++..|.+|++.||+|-|.|..|...|+.|.++ |. +=+-+.|++|-|+... .++..+..
T Consensus 214 ~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~~ 280 (445)
T PRK14030 214 FVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYMLE 280 (445)
T ss_pred HHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHHH
Confidence 8899999999999999999999999999999998653 64 4577789999998864 35543311
Q ss_pred -----------hccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHH
Q 011816 393 -----------WAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEE 458 (477)
Q Consensus 393 -----------~a~~~~~~~--~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~ 458 (477)
++...+..+ +-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |++ +| +++
T Consensus 281 ~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~~ 354 (445)
T PRK14030 281 LRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AID 354 (445)
T ss_pred HHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HHH
Confidence 111100100 1122 22457999997666 56999999999953 34678998998 653 44 456
Q ss_pred Hhc
Q 011816 459 AYT 461 (477)
Q Consensus 459 A~~ 461 (477)
.+.
T Consensus 355 iL~ 357 (445)
T PRK14030 355 KFI 357 (445)
T ss_pred HHH
Confidence 654
No 29
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.00 E-value=0.057 Score=58.49 Aligned_cols=188 Identities=18% Similarity=0.191 Sum_probs=129.8
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHH---HHHHHc---CCC-ceec----------cCCCchHHHHH
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYG---TTH-LVFN----------DDIQGTASVVL 315 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---iL~ryr---~~~-~~Fn----------DDiQGTaaV~L 315 (477)
.+..|-..|...||..+.+..||..-|-=.|++. +..+ +.+.|+ +.. .|+- +--..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556677899999999999999998888889884 2222 344454 221 2221 11234888888
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccCCcccCCCCCCCchhch---
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 391 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k~--- 391 (477)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .++..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88899999999999999999999999999999998753 63 566 999999999875 3544332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCH
Q 011816 392 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTA 456 (477)
Q Consensus 392 ------------~~a~~~~~~~--~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tp 456 (477)
.|+...+..+ +-.+ +-.++.|||+=+.. .+.+|++-++.+-+ +.-.+|.=-+| |++ +| +
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t-~e--A 361 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT-IE--A 361 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC-HH--H
Confidence 1211000000 1111 22367999998777 46999999999843 34668888888 774 33 5
Q ss_pred HHHhc
Q 011816 457 EEAYT 461 (477)
Q Consensus 457 e~A~~ 461 (477)
++.++
T Consensus 362 ~~~L~ 366 (454)
T PTZ00079 362 THLFK 366 (454)
T ss_pred HHHHH
Confidence 56654
No 30
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.99 E-value=0.0071 Score=63.06 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
|+++..+++--|.+..|..|++.+++|.|| |+.|-.+|++|... .| .++++++++. ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~g------v~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TG------VAELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CC------CCEEEEEcCC----HHH---HHH
Confidence 688888889999999999999999999999 89999999999642 23 2578888764 112 333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-C-CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-R-TFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~-g-~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
.+.++.. ....++.+++.. +|++|-+++.+ . .++++.++ +.-+|+=+|.|-
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPR 249 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPK 249 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCC
Confidence 3333321 223468888886 99999888764 3 26777662 334566689985
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.97 E-value=0.0067 Score=61.53 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch
Q 011816 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (477)
Q Consensus 312 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~ 391 (477)
+++-+++..|++..+.++...|++|+|+|.+|..++..+.. .|. +++++|++- . +.
T Consensus 133 ~~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~Ga-------~V~v~~r~~----~--------~~ 188 (296)
T PRK08306 133 PTAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LGA-------NVTVGARKS----A--------HL 188 (296)
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEECCH----H--------HH
Confidence 33344566778888889999999999999999999988864 252 788888851 1 11
Q ss_pred hhccc----cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC-c
Q 011816 392 PWAHE----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKV-Q 466 (477)
Q Consensus 392 ~~a~~----~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G-~ 466 (477)
.+++. .-...++.+.++. .|++|-++. ...+++++++.|. +..+|+=++... -.|..+.|.+ .| +
T Consensus 189 ~~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~ 258 (296)
T PRK08306 189 ARITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIK 258 (296)
T ss_pred HHHHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeE
Confidence 11111 0112467788876 999998754 4578999999996 567777665433 2455554433 34 4
Q ss_pred EEEEcCCC
Q 011816 467 TIILQHFP 474 (477)
Q Consensus 467 aifAsGsp 474 (477)
++.++|-|
T Consensus 259 ~~~~~~lp 266 (296)
T PRK08306 259 ALLAPGLP 266 (296)
T ss_pred EEEECCCC
Confidence 55567776
No 32
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.96 E-value=0.00052 Score=61.53 Aligned_cols=100 Identities=25% Similarity=0.415 Sum_probs=67.1
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc---cCCCCCHH
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLL 404 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~---~~~~~~L~ 404 (477)
++++.|++|+|||.+|-+++..|... |. ++|+++++. .+| .....+.|... .-+..++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDLE 70 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGHC
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHHH
Confidence 78999999999999999999888763 54 689999873 222 22233333110 11234566
Q ss_pred HHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 405 DAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+.++. +|++|-+++.+ -.++++.++..... ..+||=||+|-
T Consensus 71 ~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr 112 (135)
T PF01488_consen 71 EALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPR 112 (135)
T ss_dssp HHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-
T ss_pred HHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCC
Confidence 77776 99999998765 37888888755311 24999999996
No 33
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.96 E-value=0.028 Score=60.69 Aligned_cols=181 Identities=16% Similarity=0.104 Sum_probs=124.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcc--cHHHHHHHHcC---C-Ccee----------ccCCCchHHHHHH
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGT---T-HLVF----------NDDIQGTASVVLA 316 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr~---~-~~~F----------nDDiQGTaaV~LA 316 (477)
.+-.|...+.-.||..+.+.+||+.-|-=+|++.. .---+.+.|+. . .-+| .+--..||-=++-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 45567788899999999999999888888888652 22235666642 1 1233 3344568888888
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~ 396 (477)
++-.+++..|.+|++.||+|.|.|..|...|+.|.+. |. +=+-+.|++|-|+... .++..+..|-..
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8899999999999999999999999999999999763 63 3345699999988764 355544322111
Q ss_pred -----cC---------C--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 011816 397 -----HE---------P--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (477)
Q Consensus 397 -----~~---------~--~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (477)
.. . .-+-.+ +-.++.||||=+.. .+.+|++.++.+... -.-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~-g~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVAN-GVIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhc-CCeEEECCCCCCC
Confidence 00 0 001112 11246899996666 569999999999521 1137888888 65
No 34
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.86 E-value=0.0037 Score=66.79 Aligned_cols=134 Identities=24% Similarity=0.370 Sum_probs=90.8
Q ss_pred cccHHHHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChh
Q 011816 286 NHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 363 (477)
Q Consensus 286 ~~~af~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~e 363 (477)
-..||..=+|.|. .|. .|-.+|.-|++--|-++.|. |++.+++|+|||..|-.+|+.|... |+
T Consensus 138 FqkAi~~gKrvRseT~I~------~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~--- 202 (414)
T COG0373 138 FQKAISVGKRVRSETGIG------KGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV--- 202 (414)
T ss_pred HHHHHHHHHHhhcccCCC------CCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC---
Confidence 3566667777775 231 24445566666666666655 9999999999999999999988763 54
Q ss_pred hhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCCCHHHHhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCC
Q 011816 364 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLDAVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNE 438 (477)
Q Consensus 364 eA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~eav~~vkptvLIG~S~-~~g~Ft~evv~~Ma~~~e 438 (477)
++|+++++ |..|. +.+|+. .-....|.+.+.. .||+|-.++ +.-+++.+.++.-.+..+
T Consensus 203 ---~~i~IaNR----T~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~ 266 (414)
T COG0373 203 ---KKITIANR----TLERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRK 266 (414)
T ss_pred ---CEEEEEcC----CHHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhccc
Confidence 68998877 33332 223332 1123467777776 999886654 446889999887654333
Q ss_pred CcEEEEcCCCCC
Q 011816 439 KPLILALSNPTS 450 (477)
Q Consensus 439 rPIIFaLSNPt~ 450 (477)
+=+||=++||-.
T Consensus 267 ~~livDiavPRd 278 (414)
T COG0373 267 RLLIVDIAVPRD 278 (414)
T ss_pred CeEEEEecCCCC
Confidence 449999999974
No 35
>PLN00106 malate dehydrogenase
Probab=96.79 E-value=0.011 Score=61.12 Aligned_cols=142 Identities=23% Similarity=0.256 Sum_probs=94.0
Q ss_pred HHHHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|.. .|+ ...+.|+|.+- ..+-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 344678888877655 59999999 9999999998864 244 35899999865 1111111332221 21
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHH
Q 011816 395 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAE 457 (477)
Q Consensus 395 ~~~--~~~~~L~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~E~tpe 457 (477)
+-. ....++.+++++ .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.. ...+...
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~ 147 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAE 147 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence 211 133568899998 9999877765422 34678888999999999999999992 2225555
Q ss_pred HHhcccCC--cEEEEcCC
Q 011816 458 EAYTWSKV--QTIILQHF 473 (477)
Q Consensus 458 ~A~~~t~G--~aifAsGs 473 (477)
.+.+++.= .-+|++|.
T Consensus 148 ~~~~~s~~p~~~viG~~~ 165 (323)
T PLN00106 148 VLKKAGVYDPKKLFGVTT 165 (323)
T ss_pred HHHHcCCCCcceEEEEec
Confidence 55565521 56777763
No 36
>PLN00203 glutamyl-tRNA reductase
Probab=96.75 E-value=0.0046 Score=67.70 Aligned_cols=121 Identities=23% Similarity=0.370 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHHHHHhCC-CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~-~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
|--+|+-+++=-|.+..|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. ..+ ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 4445666666666677664 6999999999999999999888754 353 579998874 222 22
Q ss_pred hhchhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC---CCc-EEEEcCCCC
Q 011816 388 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPT 449 (477)
Q Consensus 388 ~~k~~~a~---~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~---erP-IIFaLSNPt 449 (477)
.....|-. ......++.++++. +|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 22222210 01123467788876 99999886443 489999999984321 244 566799996
No 37
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.75 E-value=0.021 Score=54.77 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHHHHh--CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC
Q 011816 309 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~--g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l 386 (477)
.||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. |. +++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH-------HHH
Confidence 35656667777777775 8899999999999999999999998753 53 688888641 113
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhcccCC
Q 011816 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYTWSKV 465 (477)
Q Consensus 387 ~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~~t~G 465 (477)
...+..|.- . .-+..+... .+.|+++=++. ++.+|++.++.|. -++|..-+| |++ +..+++.++ ..|
T Consensus 65 ~~~~~~~g~--~-~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~~~~--~~~~~~~L~-~~G 132 (200)
T cd01075 65 ARAAELFGA--T-VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANNQLA--DPRHGQMLH-ERG 132 (200)
T ss_pred HHHHHHcCC--E-EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcCccC--CHhHHHHHH-HCC
Confidence 333333211 1 112233333 36999995555 5799999999994 679999988 773 234556655 345
Q ss_pred cEE
Q 011816 466 QTI 468 (477)
Q Consensus 466 ~ai 468 (477)
-.+
T Consensus 133 i~~ 135 (200)
T cd01075 133 ILY 135 (200)
T ss_pred CEE
Confidence 433
No 38
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.67 E-value=0.04 Score=59.98 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=85.5
Q ss_pred CCceeccCCCchHHHH-------HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEE
Q 011816 299 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (477)
Q Consensus 299 ~~~~FnDDiQGTaaV~-------LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~l 371 (477)
.+||+|=+---|-++. ++.+=+.+|.++..|...+++|+|.|..|.++|+.+.. .|+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6999986655444433 44445556778899999999999999999999999864 253 5777
Q ss_pred EccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 372 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 372 vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+|++-. +. +.... ..-...++.++++. .|++|-..+..++|+++.++.|. +..|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 766411 10 11010 11112468898886 99999988888899999999996 566766666553
No 39
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.57 E-value=0.048 Score=54.91 Aligned_cols=136 Identities=20% Similarity=0.142 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~GLi~~~r~~~l~ 387 (477)
.||-=+.-++-.+++..+.+|+..||+|.|-|..|.+.|++|.+ .|. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCC--CCC
Confidence 46666777788888888999999999999999999999999865 363 555 999999998875 344
Q ss_pred hhch---------------hhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 011816 388 HFKK---------------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (477)
Q Consensus 388 ~~k~---------------~~a~~~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (477)
..+. .|....+.. -+-.|.. ..+.||||=+.. .+.+|++.+..+.+ +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 3221 111000000 1122222 457999997655 56999999999943 35789999999 87
Q ss_pred CCCCCCHHHHhcccCC
Q 011816 450 SQSECTAEEAYTWSKV 465 (477)
Q Consensus 450 ~~~E~tpe~A~~~t~G 465 (477)
+ + .+++.+. .+|
T Consensus 159 t-~--~a~~~L~-~rG 170 (254)
T cd05313 159 T-A--EAIEVFR-QAG 170 (254)
T ss_pred C-H--HHHHHHH-HCC
Confidence 4 2 3555554 344
No 40
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.31 E-value=0.013 Score=62.53 Aligned_cols=111 Identities=19% Similarity=0.334 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch
Q 011816 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (477)
Q Consensus 312 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~ 391 (477)
+|+-+|+=-|.+.. .++++.|++|+|||.+|-.+|..|.. .|. ++|+++++. .+|.. ....
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~---~La~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQ---KITS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHH---HHHH
Confidence 44445554444444 35889999999999999999888854 354 589988883 22211 1122
Q ss_pred hhc-cccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcE-EEEcCCCC
Q 011816 392 PWA-HEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPL-ILALSNPT 449 (477)
Q Consensus 392 ~~a-~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPI-IFaLSNPt 449 (477)
.|. ....+..+|.+++.. .|++|-+++.+ -++|++.++ .+|+ |+=||+|-
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPR 276 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQ 276 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCC
Confidence 221 111223567777876 99999988765 467876652 4565 46799996
No 41
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.30 E-value=0.033 Score=56.65 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
..+-.|-.|++..++..+.+++.+++|++|+|- +|.++|.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 346667799999999999999999999999997 99999999864 24 2 68888762
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc-CCCC---CCCCCCHHHHhc
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAYT 461 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt---~~~E~tpe~A~~ 461 (477)
..+|.+.++. +|++|-..+.++.|+.++++ +.-+|+=. .||. -.-++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1246666765 99999999999999998864 56677655 3774 112677777754
No 42
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.025 Score=57.81 Aligned_cols=97 Identities=16% Similarity=0.328 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+=.-+|-+|++..++-.+.+|+..+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 345678889999999999999999999999988 99999999864 24 3677887641
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
.+|.+.++. +|++|...+.++.|++++++ +..+|+=++.|-
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~~ 233 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNTP 233 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCCc
Confidence 258888887 99999999999999999874 567888777653
No 43
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.99 E-value=0.012 Score=58.20 Aligned_cols=127 Identities=20% Similarity=0.274 Sum_probs=82.3
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh-ccccCCCCCHHHHhcccC
Q 011816 334 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 334 iv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~-a~~~~~~~~L~eav~~vk 411 (477)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.....+.+...++ ...-....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 578999 99999999987652 41 123689999985411111001122222222 0011113568899988
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcCC
Q 011816 412 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIILQHF 473 (477)
Q Consensus 412 ptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifAsGs 473 (477)
+|++|=+.+.++. +-+++.+.|.++++..+++-.|||. .....-+++++ ...-+|++|.
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9998866555322 3578899999999999999999998 67777777773 3455788774
No 44
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.98 E-value=0.037 Score=51.89 Aligned_cols=114 Identities=23% Similarity=0.262 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
||+.+++.+..+++..|..+++.+++++|+ |..|..++..+... | .++++++++ ..+ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~----~~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRD----LER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCC----HHH---HHH
Confidence 677777888888888889999999999997 99999998888642 3 378888764 111 111
Q ss_pred hchhhcc---------ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCC--cEEEEcCCCC
Q 011816 389 FKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK--PLILALSNPT 449 (477)
Q Consensus 389 ~k~~~a~---------~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~er--PIIFaLSNPt 449 (477)
....+.. +..+..++.+++++ .|++|-.+..+ ..+....+. ..+ .+++=++.|-
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~g-~~~~~~~~~----~~~~~~vv~D~~~~~ 132 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAAG-VELLEKLAW----APKPLAVAADVNAVP 132 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCCC-ceechhhhc----ccCceeEEEEccCCC
Confidence 1111110 01112345677875 89999877655 443222221 223 3677666654
No 45
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.97 E-value=0.015 Score=51.69 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... | ..+++++|+. ..+ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58999999988889999999999999998888887542 3 2578888874 111 2222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHHHhcccCCc
Q 011816 396 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEAYTWSKVQ 466 (477)
Q Consensus 396 ~--~~~~~~L~eav~~vkptvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~E~tpe~A~~~t~G~ 466 (477)
. .....++.++++. +|++|-+...+- .|.+. .+ .+..+|+=+| +|.. +.-.+++.+ .|
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~---~~---~~~~~v~D~~~~~~~--~~l~~~~~~--~g- 132 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPS---LL---KPGGVVYDVVYNPLE--TPLLKEARA--LG- 132 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHH---Hc---CCCCEEEEcCcCCCC--CHHHHHHHH--CC-
Confidence 1 0123466776665 999998776442 12222 22 3677888775 4542 222233333 23
Q ss_pred EEEEcCCC
Q 011816 467 TIILQHFP 474 (477)
Q Consensus 467 aifAsGsp 474 (477)
+.|.+|-|
T Consensus 133 ~~~v~g~~ 140 (155)
T cd01065 133 AKTIDGLE 140 (155)
T ss_pred CceeCCHH
Confidence 45666655
No 46
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.92 E-value=0.02 Score=57.95 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=78.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc--CCCCCHHHHhccc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~~v 410 (477)
||.|+|||.+|..+|..++. .|+ ..+|.++|.+-=..++-...|.+.. .+.... -...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhCC-
Confidence 89999999999999998764 254 2579999985221111111121111 111100 011233 34665
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcCC
Q 011816 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQHF 473 (477)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsGs 473 (477)
.|++|=+++.+.. +=+++.+.|.+++...+|+-.|||. .+...-+++++. -+-||++|.
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p~~~v~g~gt 143 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV---DVITYVVQKLSGLPKNRVIGTGT 143 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH---HHHHHHHHHHhCcCHHHEeeccc
Confidence 9999988876521 1257788888999999999999998 677777777642 135788774
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.88 E-value=0.028 Score=58.82 Aligned_cols=102 Identities=19% Similarity=0.297 Sum_probs=67.0
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCCCHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~ 404 (477)
+...+++|+|+|.+|.++++.+.. .|. ++.++|++ ..| +......|... ..+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999998864 253 58888874 111 11111222211 11123578
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCC
Q 011816 405 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN-PTSQSEC 454 (477)
Q Consensus 405 eav~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~ 454 (477)
++++. +|++|.+... +.++|++.++.|. ++.+|+-+|- |....|.
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~d~GG~~e~ 276 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAIDQGGCVET 276 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEecCCCCCccC
Confidence 88875 9999987532 4468999999996 6688888774 3333443
No 48
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.88 E-value=0.026 Score=56.97 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch-hchhh
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPW 393 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~-~k~~~ 393 (477)
-.|++.+++..+..++..+++|+|||.||.+++..|.. .|+ ++|+++|+. ..|.+.+.. .+..+
T Consensus 111 ~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~ 175 (284)
T PRK12549 111 WSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARF 175 (284)
T ss_pred HHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhC
Confidence 35677888766667888999999999999999998875 364 579999984 233222211 11111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 011816 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (477)
Q Consensus 394 a~-~~~~~~~L~eav~~vkptvLIG~S~~~ 422 (477)
.. ......++.+.++. +|++|.++..|
T Consensus 176 ~~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 176 PAARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CCeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 11 01112345666665 99999987654
No 49
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.87 E-value=0.1 Score=49.51 Aligned_cols=117 Identities=20% Similarity=0.300 Sum_probs=73.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+||+--++-|++ |.++..|...++|++|-|--|-|||+.+... |. ++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----Ga-------~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----GA-------RVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----CC-------EEEEEECC------------
Confidence 477777777776 4688999999999999999999999998653 53 67766652
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHH
Q 011816 388 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEE 458 (477)
Q Consensus 388 ~~k~~~a~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~ 458 (477)
|.+.-=|. +.-+..++.|+++. +|++|-+++...+++.|.++.|. +.-|+.-..-=. -|+.-+.
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh~d--~Eid~~~ 120 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGHFD--VEIDVDA 120 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSSST--TSBTHHH
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCcCc--eeEeecc
Confidence 22211111 11223579999987 99999999988899999999996 566766444322 4555544
No 50
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.56 E-value=0.037 Score=55.05 Aligned_cols=129 Identities=23% Similarity=0.310 Sum_probs=89.5
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCC-CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC
Q 011816 305 DDIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (477)
Q Consensus 305 DDiQGTaaV~LAgll~Alr~~g~~-l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~ 383 (477)
|--+-||-=|..++-.+++..+.. ++..|++|-|.|..|...|+.|.+. |. +=+-+.|++|.|++...
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~G 73 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDG 73 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCC
Confidence 334567888888889999997766 9999999999999999999999763 52 44667799999987542
Q ss_pred CCCchhc-hhhccccCC-CCCH-----------HH--HhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEEcCC
Q 011816 384 DSLQHFK-KPWAHEHEP-VNNL-----------LD--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN 447 (477)
Q Consensus 384 ~~l~~~k-~~~a~~~~~-~~~L-----------~e--av~~vkptvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN 447 (477)
|+... ..+...... ...+ .+ .+=.++.||||=+ +.++.+|++.+. .+. +.-+||.--+|
T Consensus 74 --ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN 148 (244)
T PF00208_consen 74 --LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGAN 148 (244)
T ss_dssp --EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSS
T ss_pred --chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcc
Confidence 32211 111111111 1111 11 3445689999988 557799999998 774 24789999999
Q ss_pred -CC
Q 011816 448 -PT 449 (477)
Q Consensus 448 -Pt 449 (477)
|+
T Consensus 149 ~p~ 151 (244)
T PF00208_consen 149 GPL 151 (244)
T ss_dssp SSB
T ss_pred hhc
Confidence 55
No 51
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.55 E-value=0.024 Score=60.59 Aligned_cols=127 Identities=15% Similarity=0.227 Sum_probs=78.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCC-----CCCHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLD 405 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L~e 405 (477)
.||+|+||||+ -...++-..+.+...+ ....|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.+
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 4444443333222333 247899999752 22211111111122221 111 258999
Q ss_pred HhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 011816 406 AVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTSQ 451 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (477)
|+++ +|.+|=.-.++|. .=.++++.|.++++..+|+-.|||.
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~-- 147 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPA-- 147 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHH--
Confidence 9998 8888765555541 1237888899999999999999999
Q ss_pred CCCCHHHHhcccCCcEEEEcCC
Q 011816 452 SECTAEEAYTWSKVQTIILQHF 473 (477)
Q Consensus 452 ~E~tpe~A~~~t~G~aifAsGs 473 (477)
-+..+-+++++ ..-+|++|-
T Consensus 148 -~ivt~a~~k~~-~~rviGlc~ 167 (419)
T cd05296 148 -GIVTEAVLRHT-GDRVIGLCN 167 (419)
T ss_pred -HHHHHHHHHhc-cCCEEeeCC
Confidence 36666677777 455777653
No 52
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.53 E-value=0.06 Score=56.33 Aligned_cols=124 Identities=10% Similarity=0.121 Sum_probs=73.4
Q ss_pred ccHHHHHHHHcCCCceeccCCCchHHHHHH--HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhh
Q 011816 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLA--GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (477)
Q Consensus 287 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LA--gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~ee 364 (477)
..||..=+|-|.+.- | |.++|.++ ++..+ +.. .+|++.+++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 345555556654211 1 33444333 33333 333 56999999999999998888887765 354
Q ss_pred hcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhc-ccCCcEEEec----cCCCCCCCHHHHHHHHcCCCC
Q 011816 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNEK 439 (477)
Q Consensus 365 A~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~-~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~er 439 (477)
++|+++++.-. + .+|.... .+++. ..++||+|-. +++.-.++.+.++..- +|
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~~~------~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~---~r 255 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRTVV------REELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP---DR 255 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhhhh------hhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhcc---Cc
Confidence 68999888641 1 2222110 01111 1258999964 3444567777766421 23
Q ss_pred cEEEEcCCCCCC
Q 011816 440 PLILALSNPTSQ 451 (477)
Q Consensus 440 PIIFaLSNPt~~ 451 (477)
++|=||+|-.-
T Consensus 256 -~~iDLAvPRdI 266 (338)
T PRK00676 256 -IVFDFNVPRTF 266 (338)
T ss_pred -EEEEecCCCCC
Confidence 99999999854
No 53
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.50 E-value=0.025 Score=57.93 Aligned_cols=125 Identities=14% Similarity=0.227 Sum_probs=80.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-CCCCCHHHHhccc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~v 410 (477)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+--..++-.-+|.+.. +|-+.. -..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998764 365 3679999973211111111122222 221110 011344 45776
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcCC
Q 011816 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIILQHF 473 (477)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifAsGs 473 (477)
+|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. ++....+++++ ..+-+|++|.
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 9999977765421 1256788888999999999999998 77777777776 3344677664
No 54
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.45 E-value=0.031 Score=56.29 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCC--CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh
Q 011816 316 AGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (477)
Q Consensus 316 Agll~Alr~~g~--~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~ 393 (477)
.|++.+++-.+. .+++.+++++|||.||-+|+..|.+ .|+ ++|+++++. ..|...|.+ .|
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt----~~ka~~La~---~~ 169 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN----PDKLSRLVD---LG 169 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC----HHHHHHHHH---Hh
Confidence 466778876663 6889999999999999999888765 364 689999873 223222221 11
Q ss_pred cccc--CCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 011816 394 AHEH--EPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (477)
Q Consensus 394 a~~~--~~~---~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (477)
.... ... .++.+++. ++|++|.++..+-.++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 170 VQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred hhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHhh
Confidence 1100 011 12334444 489999998877656655543
No 55
>PRK05086 malate dehydrogenase; Provisional
Probab=95.38 E-value=0.066 Score=54.84 Aligned_cols=126 Identities=20% Similarity=0.206 Sum_probs=77.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-CCCCCHHHHhcc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~ 409 (477)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. .....-. ....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999887542 122 247889997522 11100012211 0000000 012467788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHH----hccc--CCcEEE
Q 011816 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA----YTWS--KVQTII 469 (477)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A----~~~t--~G~aif 469 (477)
.|++|=+.+.+ |. ..+++++.|.+++.+.+|+-.|||. .+..--+ ++++ ...-+|
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~---D~~t~~~~~~~~~~sg~p~~rvi 144 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV---NTTVAIAAEVLKKAGVYDKNKLF 144 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---HHHHHHHHHHHHHhcCCCHHHEE
Confidence 99888776653 21 5678999999999999999999998 4333322 2442 223467
Q ss_pred EcCC
Q 011816 470 LQHF 473 (477)
Q Consensus 470 AsGs 473 (477)
++|.
T Consensus 145 g~~~ 148 (312)
T PRK05086 145 GVTT 148 (312)
T ss_pred eeec
Confidence 6664
No 56
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.30 E-value=0.058 Score=55.51 Aligned_cols=124 Identities=18% Similarity=0.284 Sum_probs=78.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc---CCCCCHHHHh
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 407 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~eav 407 (477)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=......-++.+. ..+.... ...+++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999998654 365 24999997432211111011111 1111111 112456 567
Q ss_pred cccCCcEEEeccCCCCC-------------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--Cc
Q 011816 408 KVIKPTILIGSSGVGRT-------------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQ 466 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~-------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~ 466 (477)
++ +|++|=+.+.++. +-.++++.|.++++.-+++--|||. ......+.+.+. -.
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~---di~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL---DVMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHhcCCChh
Confidence 76 9999966555431 1347888888999888999999998 555666666653 24
Q ss_pred EEEEcC
Q 011816 467 TIILQH 472 (477)
Q Consensus 467 aifAsG 472 (477)
-+|++|
T Consensus 148 rviGlg 153 (321)
T PTZ00082 148 KVCGMA 153 (321)
T ss_pred hEEEec
Confidence 688887
No 57
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.24 E-value=0.028 Score=46.47 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=62.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEE-ccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv-D~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+...+.++.|.... -..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQA-TADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEE-ESEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcccc-ccCChHHhhcc--
Confidence 789999999999999998763 54 34677755 542 122333333332110 01279999996
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
+|++| ++..+ ..-+++++.+....+..+|..++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99988 66666 4566788888666788999988886
No 58
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.20 E-value=0.013 Score=53.16 Aligned_cols=114 Identities=21% Similarity=0.350 Sum_probs=71.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC-CcccCCCCCCCchhchhhccccCCCCCHHHHhcc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 409 (477)
.||.|+|| |..|..+|-+|+.. |+ -++|.|+|.+ ... ++..-+|.+...+.-+...-..+..++++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~-~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKA-EGEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHH-HHHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccc-eeeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999998763 55 3569999986 211 111001222211111111111356677876
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 011816 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (477)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~ 461 (477)
+|++|=+.+.+ |- +-+++.+.+++++.+.+++-.|||. ....+-+++
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv---d~~t~~~~~ 130 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV---DVMTYVAQK 130 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH---HHHHHHHHH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH---HHHHHHHHH
Confidence 99999665543 21 2346777888899999999999997 455555544
No 59
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.20 E-value=0.044 Score=58.70 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=77.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCC-----CCCHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLD 405 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L~e 405 (477)
.||+|+||||+ =.-+++-..+.....+ ....|||+|-+ ..|.+.+...-+.+++. ..+ ..++.+
T Consensus 1 ~KI~iIGgGS~--~tp~li~~l~~~~~~l----~~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~ 70 (425)
T cd05197 1 VKIAIIGGGSS--FTPELVSGLLKTPEEL----PISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLED 70 (425)
T ss_pred CEEEEECCchH--hHHHHHHHHHcChhhC----CCCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 3334443333222234 24789999964 44422112222223222 112 258999
Q ss_pred HhcccCCcEEEeccCC--------------------------CCCCC--------HHHHHHHHcCCCCcEEEEcCCCCCC
Q 011816 406 AVKVIKPTILIGSSGV--------------------------GRTFT--------KEVIEAMASFNEKPLILALSNPTSQ 451 (477)
Q Consensus 406 av~~vkptvLIG~S~~--------------------------~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~~ 451 (477)
|+++ +|.+|-.-.+ ||.|. .++++.|.++++..+|+-.|||.
T Consensus 71 Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~-- 146 (425)
T cd05197 71 AIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA-- 146 (425)
T ss_pred HhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH--
Confidence 9998 8877744333 34333 38899999999999999999998
Q ss_pred CCCCHHHHhcccCCcEEEEcC
Q 011816 452 SECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 452 ~E~tpe~A~~~t~G~aifAsG 472 (477)
-+.-+-+++++...-+|++|
T Consensus 147 -di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHHHHHHHHhCCCCcEEEEC
Confidence 45555566666444567665
No 60
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.16 E-value=0.086 Score=54.07 Aligned_cols=126 Identities=21% Similarity=0.313 Sum_probs=79.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc---CCCCCHHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 406 (477)
+..||.|+|||..|.++|.+++. .|+ ..+.|+|.+--...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 34599999999999999998764 254 25999997421111110012111 1111111 1124565 6
Q ss_pred hcccCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 011816 407 VKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIIL 470 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifA 470 (477)
+++ +|++|=+.+.+. -+-+++.+.|.++++..+++-.|||. ......+.+++. -.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 777 899986665542 23358899999999999888889998 555666767653 145888
Q ss_pred cCC
Q 011816 471 QHF 473 (477)
Q Consensus 471 sGs 473 (477)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 773
No 61
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.18 Score=51.65 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++..++-.+.+|+..+++++|-|. .|..+|.||.. .| ..+.+|+|+
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4678889999999999999999999999998 99999999864 24 257777764
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCC----CCCCCCHHHHhcccC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPT----SQSECTAEEAYTWSK 464 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt----~~~E~tpe~A~~~t~ 464 (477)
.++|.+.+++ +|++|-..+.++.|+.++|+ +..+|+=.. |+. -.--+.+|.+.+.
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvGin~~~~gk~~GDvd~~~~~~~-- 252 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVGINRLEDGKLVGDVEFETAAER-- 252 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcccccccCCCcCCCcCHHHHHhh--
Confidence 1358888987 99999999999999999886 677887666 442 1233666777553
Q ss_pred CcEEEEcCCC
Q 011816 465 VQTIILQHFP 474 (477)
Q Consensus 465 G~aifAsGsp 474 (477)
+-+.|..|
T Consensus 253 --a~~itPvP 260 (285)
T PRK10792 253 --ASWITPVP 260 (285)
T ss_pred --ccCcCCCC
Confidence 44556554
No 62
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.11 E-value=0.18 Score=46.44 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch
Q 011816 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 391 (477)
Q Consensus 312 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~ 391 (477)
-.+..|++..++..|.+++.++++++|.+.. +.+-+...|.+ .|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~ga-------tV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DGA-------TVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CCC-------EEEEeCCCC---------------
Confidence 3577889999999999999999999998654 44444443333 353 577777641
Q ss_pred hhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 392 PWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 392 ~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
.+|.++++. +|++|-..+.++.|+.++|| +.-+|..-
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vidv 99 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVINC 99 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEEc
Confidence 268888987 99999999999999999997 55666643
No 63
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.09 E-value=0.048 Score=54.78 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=74.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc----cc-----CCCCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH-----EPVNN 402 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~----~~-----~~~~~ 402 (477)
.||.|+|||..|.++|..++. .|+ . .++++|.+ .++ +......+.+ .. ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 254 2 79999982 211 1111111111 00 01234
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC---
Q 011816 403 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKV--- 465 (477)
Q Consensus 403 L~eav~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G--- 465 (477)
. ++++. +|++|=+.+.+ | -.-+++++.|.+++...+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 5 55776 89988433322 2 22357778888899999888889998 55555666665 4
Q ss_pred cEEEEcCC
Q 011816 466 QTIILQHF 473 (477)
Q Consensus 466 ~aifAsGs 473 (477)
+-+|++|.
T Consensus 138 ~~viG~gt 145 (307)
T PRK06223 138 NRVIGMAG 145 (307)
T ss_pred ccEEEeCC
Confidence 56899884
No 64
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.97 E-value=0.15 Score=56.14 Aligned_cols=120 Identities=19% Similarity=0.211 Sum_probs=69.8
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC---CC------------chhchh
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL------------QHFKKP 392 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~---~l------------~~~k~~ 392 (477)
.....|++|+|||.+|++.+..... .| | +++.+|.+- .|.+ .+ ......
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~~----~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTRP----EVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCCH----HHHHHHHHcCCeEEEeccccccccccc
Confidence 3458999999999999998776643 35 3 477777641 1100 00 011122
Q ss_pred hccccCCC------CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCH--HH
Q 011816 393 WAHEHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA--EE 458 (477)
Q Consensus 393 ~a~~~~~~------~~L~eav~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tp--e~ 458 (477)
|++...+. ..+.+.++ ++|++|.+++.+| +++++.++.|. +.-+|.=++.+. ...|++. +.
T Consensus 226 ya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~~~~~ 300 (509)
T PRK09424 226 YAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTVPGEV 300 (509)
T ss_pred hhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCcccccCccc
Confidence 33321110 11222233 4999999999866 67999999997 555666677753 3346554 22
Q ss_pred Hhccc-CCcEEEE
Q 011816 459 AYTWS-KVQTIIL 470 (477)
Q Consensus 459 A~~~t-~G~aifA 470 (477)
. ++ +|--|++
T Consensus 301 v--~~~~gVti~G 311 (509)
T PRK09424 301 V--VTDNGVTIIG 311 (509)
T ss_pred e--EeECCEEEEE
Confidence 2 23 5655554
No 65
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.86 E-value=0.18 Score=52.31 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=69.6
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc--ccCCCCCHHH
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHEPVNNLLD 405 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~--~~~~~~~L~e 405 (477)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-+|.+... ... ......+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCc-CceEEEecCCCchHH
Confidence 34469999999 9999999987753 243 3689999982 21 111111322111 111 1111134478
Q ss_pred HhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 406 AVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
++++ .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 8988 9988866655322 4568899999999999999999998
No 66
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.13 Score=52.60 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++.=|+-.+-+++..++|++|.| ..|.-+|.++.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 357788889999999999999999999999 999999999864 253 45566442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
..+|.+.++. +|++|...+.++.+++++|+ +..+|+=..
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk------~GavVIDvG 229 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK------KGAVVVDIG 229 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCcEEEEee
Confidence 1246788887 99999999999999999995 566776554
No 67
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.52 E-value=0.21 Score=51.47 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=79.7
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccC--CCCCHHHHhcc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 409 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~--~~~~L~eav~~ 409 (477)
||.|+|| |..|..+|-.|+. .|+ ...+.|+|.+ + ..+-.-+|.+.. .+.+-.. ...++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987753 365 3689999998 2 222211244332 1111111 11346788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCC----HHHHhcccCC--cEEE
Q 011816 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECT----AEEAYTWSKV--QTII 469 (477)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~t----pe~A~~~t~G--~aif 469 (477)
.|++|=+++.+ |- .-+++++.+.++++..+|+-.|||. .+. .+-+++++.= +-+|
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv---Dv~~~i~t~~~~~~s~~p~~rvi 143 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV---NSTVPIAAEVLKKAGVYDPKRLF 143 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch---hhHHHHHHHHHHHhcCCCHHHEE
Confidence 99888666653 31 2346777888899999999999998 454 5555555532 1377
Q ss_pred EcCC
Q 011816 470 LQHF 473 (477)
Q Consensus 470 AsGs 473 (477)
++|.
T Consensus 144 G~~~ 147 (310)
T cd01337 144 GVTT 147 (310)
T ss_pred eeec
Confidence 7764
No 68
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.25 E-value=0.066 Score=51.31 Aligned_cols=103 Identities=24% Similarity=0.233 Sum_probs=65.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC--------CCCchhchhhcc---
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~--------~~l~~~k~~~a~--- 395 (477)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+=+ ....- +.+-..|..-+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~v-e~sNL~Rq~l~~~~diG~~Ka~~~~~~l 84 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHV-DLSNLQRQILFTEEDVGRPKVEVAAQRL 84 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEE-cccchhhhhccChhhCCChHHHHHHHHH
Confidence 478999999999999999999999764 65 69999998732 11110 001111111110
Q ss_pred -c-c---------CCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 396 -E-H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 396 -~-~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
. . ... .++.+.++. .|++|.+... .=++.++..++.....|.|++-
T Consensus 85 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d~--~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 85 RELNSDIQVTALKERVTAENLELLINN--VDLVLDCTDN--FATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 0 0 111 235566665 8999987653 3355667777777889999865
No 69
>PLN02928 oxidoreductase family protein
Probab=93.98 E-value=0.75 Score=47.94 Aligned_cols=120 Identities=17% Similarity=0.234 Sum_probs=77.4
Q ss_pred CchHHHHHHHHHHHHHH----------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEE
Q 011816 308 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (477)
Q Consensus 308 QGTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~l 371 (477)
+.+|--+++.+++.+|- .+..|.+.++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777776663 24579999999999999999999998642 64 6888
Q ss_pred EccCCcccCCCCCCCchhc----hhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 372 VDSKGLIVSSRKDSLQHFK----KPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 372 vD~~GLi~~~r~~~l~~~k----~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
+|+..- ......+. .+ ..+........+|.|+++. .|+++-.- ...+.|+++.+..|. +..++.
T Consensus 188 ~dr~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSWT--SEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCCC--hhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 887420 10000000 00 0111111134589999987 89988652 224689999999996 567777
Q ss_pred EcCC
Q 011816 444 ALSN 447 (477)
Q Consensus 444 aLSN 447 (477)
=.|.
T Consensus 260 NvaR 263 (347)
T PLN02928 260 NIAR 263 (347)
T ss_pred ECCC
Confidence 6664
No 70
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.89 E-value=0.088 Score=50.73 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=33.3
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|++.||+|+|+|..|..||..|+.+ |+ +++.++|.+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 468899999999999999999999764 65 689999987
No 71
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=93.76 E-value=0.13 Score=54.73 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=73.3
Q ss_pred ceEEEeCcchHHHHHHH--HHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc------CCCCCH
Q 011816 332 HRFLFLGAGEAGTGIAE--LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNL 403 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~--ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~------~~~~~L 403 (477)
.||.|+|||+.|.+.+- .|+.. ..+ +-..++|+|.+- ++.+.....-+.++... ....++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~----~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKT----PEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcC----CCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 37999999999888663 22211 111 235899999742 22111111111121111 113578
Q ss_pred HHHhcccCCcEEEeccCCC---------------CCC---------------------CHHHHHHHHcCCCCcEEEEcCC
Q 011816 404 LDAVKVIKPTILIGSSGVG---------------RTF---------------------TKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~---------------g~F---------------------t~evv~~Ma~~~erPIIFaLSN 447 (477)
.+++++ +|++|=.-..+ |+| -.++.+.|.+++++.+++=.||
T Consensus 69 ~eal~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tN 146 (423)
T cd05297 69 REALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYAN 146 (423)
T ss_pred HHHhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 999987 89887544322 112 1277777888889999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEEcC
Q 011816 448 PTSQSECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 448 Pt~~~E~tpe~A~~~t~G~aifAsG 472 (477)
|. -+..+-+++.++ .-+|++|
T Consensus 147 Pv---~i~t~~~~k~~~-~rviG~c 167 (423)
T cd05297 147 PM---AELTWALNRYTP-IKTVGLC 167 (423)
T ss_pred hH---HHHHHHHHHhCC-CCEEEEC
Confidence 98 444455567665 5578777
No 72
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.72 E-value=0.12 Score=52.81 Aligned_cols=123 Identities=21% Similarity=0.282 Sum_probs=76.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc---CCCCCHHHHhc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAVK 408 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~eav~ 408 (477)
.||.|+|+|..|.++|-.++.. |+ + +++++|..--+.+++.-.+.+ ...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 4899999999999999987652 54 2 599999832221111000100 00110000 11246766 66
Q ss_pred ccCCcEEEeccCCC---C-C------C----CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcC
Q 011816 409 VIKPTILIGSSGVG---R-T------F----TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 409 ~vkptvLIG~S~~~---g-~------F----t~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsG 472 (477)
. .|++|=+.+.+ | . + =+++++.|.+++.+.+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 89887555532 1 1 2 245667788889999999999998 778888888742 23488887
No 73
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.68 E-value=0.53 Score=49.97 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
..|.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+.. .|+ +++.+|.
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a-----~G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRG-----LGW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEECC
Confidence 3455555322 233445789999999999999999999999999999999999864 365 6788886
No 74
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.58 E-value=0.45 Score=49.10 Aligned_cols=93 Identities=11% Similarity=0.209 Sum_probs=60.5
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHH
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
|..|.+.+|.|+|.|..|..+|+.+..+ .|+ ++|.+|+.. . ... ..++ ....+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~~~l~e 196 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYKDTIEE 196 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---cccCCHHH
Confidence 4568899999999999999999998533 253 688888642 1 001 1111 12347888
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+++. .|+++=..- ..++|+++.++.|. +..++.=+|.
T Consensus 197 ll~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 197 AVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred HHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 8876 788774421 12466777777775 5667776665
No 75
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.40 E-value=0.49 Score=46.31 Aligned_cols=109 Identities=19% Similarity=0.314 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhC---------CCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCC
Q 011816 312 SVVLAGVVAALKLIG---------GTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 381 (477)
Q Consensus 312 aV~LAgll~Alr~~g---------~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~ 381 (477)
-+|-.|++.=|+..+ .+++.++++|+|-+. .|.-+|.||.. .| ..+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 345556666666554 489999999999865 56677777754 24 368899999988866
Q ss_pred CCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEE
Q 011816 382 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 382 r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIF 443 (477)
+...+.+.+.+ ..+...+|.+.++. +|++|-..+.++. ++.|+|+ +..||+
T Consensus 102 ~~~~~~hs~t~---~~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik------~GavVI 153 (197)
T cd01079 102 RGESIRHEKHH---VTDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK------DGAICI 153 (197)
T ss_pred ccccccccccc---ccchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC------CCcEEE
Confidence 54322111110 00111248899987 9999999999998 8999997 455664
No 76
>PRK15076 alpha-galactosidase; Provisional
Probab=93.39 E-value=0.18 Score=54.09 Aligned_cols=125 Identities=16% Similarity=0.131 Sum_probs=74.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC-chhchhhccccCC-----CCCHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL-QHFKKPWAHEHEP-----VNNLLD 405 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l-~~~k~~~a~~~~~-----~~~L~e 405 (477)
.||.|+|||+.|...+- +..+....++ +...++|+|.+- +|.+.. .-.+..++..... .+++.+
T Consensus 2 ~KIaIIGaGsvg~~~~~--~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTKNL--LGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHHHH--HHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 58999999998654433 2222211233 235899999742 221100 0011111111111 257889
Q ss_pred HhcccCCcEEEeccCCCCC-------------------------------------CCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 406 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~-------------------------------------Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
++++ +|++|=..+++|. .=.++++.|.++++..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9987 8888765555431 114778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEEcC
Q 011816 449 TSQSECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 449 t~~~E~tpe~A~~~t~G~aifAsG 472 (477)
. .+..+-++.+. ..-+|++|
T Consensus 150 ~---divt~~~~~~~-~~rviG~c 169 (431)
T PRK15076 150 M---AMNTWAMNRYP-GIKTVGLC 169 (431)
T ss_pred H---HHHHHHHhcCC-CCCEEEEC
Confidence 8 45555555664 34577777
No 77
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.23 E-value=0.66 Score=47.92 Aligned_cols=126 Identities=23% Similarity=0.297 Sum_probs=79.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc--CCCCCHHHHhcc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~~ 409 (477)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+. ..+-.-+|.+.. ...+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999998754 254 26899999876 222111243322 111111 111246788888
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHHHHhcccC--CcEEEEcC
Q 011816 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~E~tpe~A~~~t~--G~aifAsG 472 (477)
+|++|=+.+.+.. .=+++.+.+.++++..||+-.|||.. ++.+..+-+++++. -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 9988856555421 22467777888999999999999982 12236666666442 12477777
Q ss_pred C
Q 011816 473 F 473 (477)
Q Consensus 473 s 473 (477)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 4
No 78
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.21 E-value=0.2 Score=50.97 Aligned_cols=50 Identities=30% Similarity=0.375 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.|++.+++..+..+++.+++++|||-|+.+|+-.+.. .|+ ++|+++|+.
T Consensus 108 ~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 108 GTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 35678888888888999999999999999888776654 364 689999984
No 79
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.20 E-value=0.41 Score=49.47 Aligned_cols=121 Identities=21% Similarity=0.141 Sum_probs=77.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc--ccCCCCCCCchhchhhccccCCCCCHHHHhcc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL--i~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 409 (477)
||.|.|| |..|..+|..|+. .|+-.++-...+.|+|.+.- ..++..-+|.+...++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35522222337999998641 11111111333322332221111457788988
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
.|++|=+.+.+ |- +-+++++.|++++ +..||+-.|||- .+..--+++++
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 140 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA---NTNALIALKNA 140 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 99888665553 31 2357788888994 999999999998 67776777765
No 80
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.16 E-value=3 Score=44.98 Aligned_cols=187 Identities=24% Similarity=0.246 Sum_probs=124.6
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcc--cHHHHHHHHcCC-----Ccee----------ccCCCchHHHH
Q 011816 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYGTT-----HLVF----------NDDIQGTASVV 314 (477)
Q Consensus 252 R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr~~-----~~~F----------nDDiQGTaaV~ 314 (477)
..+-.|-.+|...|++++.+.-||+.-|-=+|+... .---+.+.|+.- ..|| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 356677888999999999999999999999999862 222245666531 2222 12222344333
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
.-+.-.|++..|.+|+..||+|-|-|.+|.-.|+.+.+. |. |=+-+-|++|.|++.. .|+..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 333448888889889999999999999999999998753 53 5567789999888863 3553332211
Q ss_pred cc----------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 395 HE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 395 ~~----------~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
++ .+.+.+ |.+-.+..||||=+.. .+.+|++-.+.+.+ + +|.=-+| |++ ..+++.+.
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~t---~eA~~i~~ 325 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPTT---PEADEILL 325 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCCC---HHHHHHHH
Confidence 11 011111 3344457899997666 56999999998863 2 8888888 773 34455554
No 81
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.13 E-value=0.52 Score=48.76 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=80.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcC-eEEEEccCCcc--cCCCCCCCchhchhhccccCCCCCHHHHhc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK-KICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~-~i~lvD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 408 (477)
||.|+|| |..|..+|..|+.. |+-..+ .+ .+.|+|.+.-. .....-+|.+...++........+..++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~-~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKD-QPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCC-CccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999987642 441000 11 68999974321 111111133333233211111125677888
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEc
Q 011816 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKV--QTIILQ 471 (477)
Q Consensus 409 ~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~-~erPIIFaLSNPt~~~E~tpe~A~~~t~G--~aifAs 471 (477)
+ .|++|=+.+.+ |- +=+++++.|+++ ++..||+-.|||. .++.--+++++.+ +.+|.|
T Consensus 75 ~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~ 149 (324)
T TIGR01758 75 D--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSA 149 (324)
T ss_pred C--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEE
Confidence 7 99998666654 21 124677888888 4899999999998 7887778777632 237888
Q ss_pred CC
Q 011816 472 HF 473 (477)
Q Consensus 472 Gs 473 (477)
|.
T Consensus 150 gt 151 (324)
T TIGR01758 150 LT 151 (324)
T ss_pred ee
Confidence 75
No 82
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.13 E-value=0.33 Score=49.79 Aligned_cols=94 Identities=19% Similarity=0.327 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcchH-HHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGsA-g~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++.-|+-.+-+++..+++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC--------------
Confidence 45678889999999999999999999999998 9999999864 243 45565442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP 448 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP 448 (477)
..+|.+.++. +|++|-..+.++.|++++++ +..+|+=.. |+
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik------~gavVIDVGin~ 233 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK------PGATVIDVGMNR 233 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEccccc
Confidence 1357788887 99999999999999998886 556776554 44
No 83
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.09 E-value=0.27 Score=51.17 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC--CC-c-------hhchhhc--
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SL-Q-------HFKKPWA-- 394 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~--~l-~-------~~k~~~a-- 394 (477)
.+|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+ ..+.-. .| + ..|..-|
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~v-e~sNL~RQ~l~~~~d~~~g~~Ka~aa~~ 87 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDYV-EWSNLQRQQLYTEEDAKQKKPKAIAAKE 87 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCcc-cccccCccccccHHHccCCccHHHHHHH
Confidence 578899999999999999999999875 65 68999999742 211100 00 0 0011000
Q ss_pred --cc-c---------CCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 395 --HE-H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 395 --~~-~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
+. . ... .++.+.++. .|++|-++.- .-+..++-.++.....|.|++
T Consensus 88 ~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D~--~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 88 HLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATDN--FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 00 0 111 246777765 8999987752 335566777777778999976
No 84
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.95 E-value=0.4 Score=49.60 Aligned_cols=107 Identities=14% Similarity=0.283 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++.=|+-.|.+++.++|+|+|.| ..|..+|.+|... |. .+.+++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC--------C-----
Confidence 356778889999999999999999999996 9999999999753 53 57777653 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCC-----C--CCCCHHHHhc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTS-----Q--SECTAEEAYT 461 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~-----~--~E~tpe~A~~ 461 (477)
.++.|+++. +|++|-.-+.++.+++++++ +..||.=+| |+.. + -.+.+|++.+
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvgin~~~~~g~~kl~GDvdf~~~~~ 254 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVGINRIDDDGRSRLVGDVDFDSALP 254 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEecccccCCCCCcceecccchHHHHh
Confidence 168899987 99999999999999998853 677888888 5521 0 2366666654
No 85
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.89 E-value=0.96 Score=48.07 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
..|=-+++.+++..|-.|..|.+.++.|+|.|..|-.+|+.+... |+ ++..+|.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp 147 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDP 147 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 455667889999888889999999999999999999999998643 65 6788885
No 86
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.88 E-value=0.14 Score=46.95 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=49.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch--hhccc---cCC---CCCHH
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 404 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~--~~a~~---~~~---~~~L~ 404 (477)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++.... .|... .++ ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999998763 4 46777776531110 1111110 11110 111 25788
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 011816 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (477)
+++++ +|++| +..+. .+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iavPs-~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAVPS-QAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S-G-GGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecccH-HHHHHHHHHHhhcc
Confidence 99987 78776 43332 46688888887644
No 87
>PRK08328 hypothetical protein; Provisional
Probab=92.87 E-value=0.061 Score=52.71 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=42.3
Q ss_pred HHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEE
Q 011816 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (477)
Q Consensus 293 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv 372 (477)
++||..++..|..+. -.+|++.||+++|+|..|..||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877666665421 2467788999999999999999999874 75 689999
Q ss_pred ccC
Q 011816 373 DSK 375 (477)
Q Consensus 373 D~~ 375 (477)
|.+
T Consensus 58 D~D 60 (231)
T PRK08328 58 DEQ 60 (231)
T ss_pred cCC
Confidence 976
No 88
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.76 E-value=0.24 Score=50.84 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=78.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc--CCCCCHHHHhcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~~ 409 (477)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999998764 255 4689999974211111001132222 332211 11135554 776
Q ss_pred cCCcEEEeccCCC---CCCC------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcC
Q 011816 410 IKPTILIGSSGVG---RTFT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIILQH 472 (477)
Q Consensus 410 vkptvLIG~S~~~---g~Ft------------~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifAsG 472 (477)
+|++|=+.+.+ | -| +++++.|.+++.+.+|+-.|||. .....-+++++ .-+-||++|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV---DIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH---HHHHHHHHHHhCCCHHHEEecC
Confidence 99987555542 3 23 36778888999999999999998 57777777763 223577776
Q ss_pred C
Q 011816 473 F 473 (477)
Q Consensus 473 s 473 (477)
.
T Consensus 146 t 146 (312)
T cd05293 146 C 146 (312)
T ss_pred c
Confidence 4
No 89
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.60 E-value=0.23 Score=51.94 Aligned_cols=102 Identities=22% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC--------CCCchhchhhc----
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWA---- 394 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~--------~~l~~~k~~~a---- 394 (477)
++|++.||+++|+|..|..||+.|+.+ |+ ++|.++|.+= |..+.- +++-..|..-+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 367889999999999999999999764 75 6899999862 111100 00111111111
Q ss_pred -cccC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 395 -HEHE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 395 -~~~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
+-.+ .. .++.+.++. .|++|-++... =+...+-.++.....|+|++
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 1001 11 135556665 89999877632 24567888888888999887
No 90
>PRK08223 hypothetical protein; Validated
Probab=92.60 E-value=0.22 Score=51.08 Aligned_cols=124 Identities=14% Similarity=0.053 Sum_probs=77.6
Q ss_pred HHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeE
Q 011816 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (477)
Q Consensus 290 f~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i 369 (477)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6667777666655543322 578899999999999999999999875 75 689
Q ss_pred EEEccCCcccCCCC-------CCCchhchhhccc-----cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCC
Q 011816 370 CLVDSKGLIVSSRK-------DSLQHFKKPWAHE-----HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFT 426 (477)
Q Consensus 370 ~lvD~~GLi~~~r~-------~~l~~~k~~~a~~-----~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft 426 (477)
.++|.+=+=.++-. +++-..|..-|.+ .+ .. .++.+.+++ .|++|=.+--...=+
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~~ 132 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFDA 132 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHHH
Confidence 99998743222211 0111122222211 01 11 356777776 899883332110125
Q ss_pred HHHHHHHHcCCCCcEEEE
Q 011816 427 KEVIEAMASFNEKPLILA 444 (477)
Q Consensus 427 ~evv~~Ma~~~erPIIFa 444 (477)
.-.|-..+.....|.|.+
T Consensus 133 r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 133 RRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 677777887788999987
No 91
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.58 E-value=0.26 Score=50.01 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|++.+++..+..+++.+++++|||-|+-+|+-.|.+ .|+ ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 4677788755556888999999999999999888765 364 689999883
No 92
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.56 E-value=0.38 Score=44.99 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=63.9
Q ss_pred HHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCC
Q 011816 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 401 (477)
Q Consensus 322 lr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~ 401 (477)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567889999999999999999999999743 64 7888888522 100 1111111234
Q ss_pred CHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 402 NLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+|.|.++. .|+++=.- ...+.|+++.++.|. +..++.-.|.
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR 128 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR 128 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc
Confidence 78888887 88877432 113688888888886 5666665554
No 93
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.51 E-value=0.35 Score=49.51 Aligned_cols=108 Identities=17% Similarity=0.284 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
=.-+|-.|++.=++-.+-+++..+++++|.+ .-|.-+|.++... | ..+..++++-
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~t------------ 186 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSKT------------ 186 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecCh------------
Confidence 3466788889999999999999999999999 7888888887542 3 3566666531
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC---CCCCCCCHHHHhc
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP---TSQSECTAEEAYT 461 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP---t~~~E~tpe~A~~ 461 (477)
.+|.+.++. +|++|+.-+.++.+|+++|+ +..+|.=.+ |. .-.--+.+|++.+
T Consensus 187 ------------~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk------~GavVIDVgi~~~~gkl~GDvdf~~~~~ 243 (279)
T PRK14178 187 ------------ENLKAELRQ--ADILVSAAGKAGFITPDMVK------PGATVIDVGINQVNGKLCGDVDFDAVKE 243 (279)
T ss_pred ------------hHHHHHHhh--CCEEEECCCcccccCHHHcC------CCcEEEEeeccccCCCCcCCccHHHHHh
Confidence 368899987 99999999988999999983 677876655 33 1113445666644
No 94
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.42 E-value=0.45 Score=46.30 Aligned_cols=39 Identities=36% Similarity=0.469 Sum_probs=34.1
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~ 55 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV 55 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE
Confidence 478899999999999999999999774 75 7999999873
No 95
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.40 E-value=0.77 Score=47.46 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=75.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc--cCCCCCCCchhchhhccccCCCCCHHHHhc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 408 (477)
-||+|.|| |..|..+|..|+.. |+--.+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 37999999 99999999987652 43100011379999985421 111000122211122111111257888998
Q ss_pred ccCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 409 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
+ +|++|=+.+.+.. -| +++++.|.+++ ..-||+-.|||. .++..-+++++
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~ 142 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYA 142 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 7 9999866665421 23 56778888885 699999999998 67777777764
No 96
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.32 E-value=0.27 Score=50.51 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=78.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCC--CCCHHHHhcc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEP--VNNLLDAVKV 409 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~--~~~L~eav~~ 409 (477)
||.|+|||..|..+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. ..-. .++ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998865 255 3589999973111111111132221 2221 0001 133 466777
Q ss_pred cCCcEEEeccCCC---CCCC--------------HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 011816 410 IKPTILIGSSGVG---RTFT--------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIIL 470 (477)
Q Consensus 410 vkptvLIG~S~~~---g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifA 470 (477)
+|++|=+.+.+ | -| +++++.+.+++...|++-.|||. .+...-+++++. -+-+|.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 99988666653 3 23 57788889999999999999997 677777777652 244777
Q ss_pred cCC
Q 011816 471 QHF 473 (477)
Q Consensus 471 sGs 473 (477)
||.
T Consensus 143 ~gt 145 (307)
T cd05290 143 TGT 145 (307)
T ss_pred ccc
Confidence 764
No 97
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.20 E-value=0.47 Score=44.62 Aligned_cols=96 Identities=25% Similarity=0.217 Sum_probs=56.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC-------CCCchhchhhcc----c-cCC-
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAH----E-HEP- 399 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~-------~~l~~~k~~~a~----~-~~~- 399 (477)
||+++|+|..|..||+.|+.+ |+ ++|.++|.+= +..++- +++...|..-+. . .+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~-v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v 68 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFDV-VEPSNLNRQQYFLSQIGEPKVEALKENLREINPFV 68 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcCcchhcccccHhhCCChHHHHHHHHHHHHCCCC
Confidence 689999999999999999764 65 6899999873 222110 001111111111 0 010
Q ss_pred ----------CCCHHHHhcccCCcEEEeccCCCCCCCH-HHHHHHHcCCCCcEEEE
Q 011816 400 ----------VNNLLDAVKVIKPTILIGSSGVGRTFTK-EVIEAMASFNEKPLILA 444 (477)
Q Consensus 400 ----------~~~L~eav~~vkptvLIG~S~~~g~Ft~-evv~~Ma~~~erPIIFa 444 (477)
..++.+.++. .|++|.++.. .-++ .+.+.+.+....|+|++
T Consensus 69 ~i~~~~~~~~~~~~~~~l~~--~DlVi~~~d~--~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 69 KIEAINIKIDENNLEGLFGD--CDIVVEAFDN--AETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred EEEEEEeecChhhHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHHCCCCEEEE
Confidence 1235566665 8999987442 2233 35566666557899986
No 98
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.19 E-value=1.4 Score=44.49 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..||.|+|+|..|.++|..+..+ | .++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 4 357777764
No 99
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.16 E-value=0.59 Score=48.09 Aligned_cols=116 Identities=16% Similarity=0.292 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++..++-.+-+|+..++|++|.+. .|.-+|.+|.. .|. .+.+|+++
T Consensus 144 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 197 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF-------------- 197 (287)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc--------------
Confidence 4678889999999999999999999999998 89999999864 242 46667642
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCC---CCCCCHHHHhcccCC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTS---QSECTAEEAYTWSKV 465 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~---~~E~tpe~A~~~t~G 465 (477)
.++|.+.+++ +|++|-..|.++.+++++|+ +..+|.=.. |... ---+.+|.+.+
T Consensus 198 ----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk------~gavVIDvGin~~~gkl~GDvd~~~~~~---- 255 (287)
T PRK14176 198 ----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK------EGAVIFDVGITKEEDKVYGDVDFENVIK---- 255 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC------CCcEEEEecccccCCCccCCcCHHHHHh----
Confidence 1247788887 99999999999999999886 566765433 4420 12366666644
Q ss_pred cEEEEcCCC
Q 011816 466 QTIILQHFP 474 (477)
Q Consensus 466 ~aifAsGsp 474 (477)
++-+.|.-|
T Consensus 256 ~a~~iTPVP 264 (287)
T PRK14176 256 KASLITPVP 264 (287)
T ss_pred hceEcCCCC
Confidence 344455444
No 100
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.14 E-value=0.66 Score=47.69 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~ 396 (477)
|.+++..+... ...+++|+|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44555544322 346899999999999998877543 243 578888772 222 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 011816 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (477)
Q Consensus 397 ----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~ 458 (477)
.....++.++++. .|++|-++.. ...|+.++++. .-.|.++...+ .+-|+.|+-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHH
Confidence 1123679999986 9999987643 24678777753 33455554322 246887765
No 101
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.08 E-value=0.24 Score=49.97 Aligned_cols=118 Identities=19% Similarity=0.349 Sum_probs=72.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC----CCchhchhhcccc---CCCCCHHHH
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 406 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~~a~~~---~~~~~L~ea 406 (477)
|.|+|||..|.++|..++. .|+ + .++++|.+ .++.. .+.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5789999999999998764 254 2 79999986 22210 011110 000000 011344 45
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 011816 407 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIIL 470 (477)
Q Consensus 407 v~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifA 470 (477)
++. +|++|=+.+.+ | .+-+++++.|.+++...+|+-.|||. ......+++++. -+-+|+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviG 138 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIG 138 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEE
Confidence 776 89988433322 1 12347888999999999999999998 566666666652 125888
Q ss_pred cCC
Q 011816 471 QHF 473 (477)
Q Consensus 471 sGs 473 (477)
+|.
T Consensus 139 lgt 141 (300)
T cd01339 139 MAG 141 (300)
T ss_pred ecc
Confidence 873
No 102
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.06 E-value=0.3 Score=48.80 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=57.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc-------hhhc----------
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWA---------- 394 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-------~~~a---------- 394 (477)
.||.|+|+|..|.+||..+... |. +++++|.+- . .++..+ ..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888653 53 688898641 1 111111 0110
Q ss_pred -cc-cC---CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 011816 395 -HE-HE---PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (477)
Q Consensus 395 -~~-~~---~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (477)
.. .. ...++.++++. +|++|=+-.-.-.+.+++++...+..+...|+ .||.+++
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~ 123 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL 123 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC
Confidence 00 01 12578888876 88887543222235667777777665555555 3565544
No 103
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.97 E-value=0.36 Score=48.79 Aligned_cols=50 Identities=32% Similarity=0.389 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..|++.+++..+..+++.+++|+|||-||.+||..+.. .|. ++|+++|+.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45678888877778889999999999888777766654 364 579999874
No 104
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.76 E-value=1.3 Score=46.14 Aligned_cols=111 Identities=23% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCceeccCC---CchHHHHHHHHHHHHH------------------HhCCCCccceEEEeCcchHHHHHHHHHHHHHHhh
Q 011816 299 THLVFNDDI---QGTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 357 (477)
Q Consensus 299 ~~~~FnDDi---QGTaaV~LAgll~Alr------------------~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~ 357 (477)
.|.|+|-.- +..|=-++|.+|+..| ..|..|.++++-|+|.|..|..+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 345555443 2344557888888887 567789999999999999999999998653
Q ss_pred CCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHH
Q 011816 358 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAM 433 (477)
Q Consensus 358 ~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~M 433 (477)
|+ ++..+|+. ..+. ... ........+|.+.++. .|++.-.- ..-|.++++-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 65 68888873 1110 000 0011223567777776 77776432 11257777777777
Q ss_pred H
Q 011816 434 A 434 (477)
Q Consensus 434 a 434 (477)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 4
No 105
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.65 E-value=0.44 Score=47.72 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=55.9
Q ss_pred HHHHHHHHHH-hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh
Q 011816 315 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (477)
Q Consensus 315 LAgll~Alr~-~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~ 393 (477)
..|++++++. .+..+++.+++|+|||.+|-+++..+.. .|+ .+|+++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 4567777774 5678999999999999999999888864 354 579999884 122 11222222
Q ss_pred cccc-CCC-CCHHHHhcccCCcEEEeccCCC
Q 011816 394 AHEH-EPV-NNLLDAVKVIKPTILIGSSGVG 422 (477)
Q Consensus 394 a~~~-~~~-~~L~eav~~vkptvLIG~S~~~ 422 (477)
.... -.. .++.+++.. +|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 123455554 89999988655
No 106
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.54 E-value=0.78 Score=50.62 Aligned_cols=184 Identities=15% Similarity=0.218 Sum_probs=93.8
Q ss_pred hhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceec--cCCCchHHHH
Q 011816 237 EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVV 314 (477)
Q Consensus 237 e~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~ 314 (477)
+.|..+-.|+|+-|+-.. . |.++++.++ .-++|-+|.+-. + .|- .+..+|. ..|-|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n----~----~ll~~l~~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN----P----ELMEKLAAK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC----H----HHHHHHHHc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHH
Confidence 445566677777775331 2 233333332 234566775531 0 111 1222222 3455666665
Q ss_pred HHHHHHHHHHhC-----CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC---
Q 011816 315 LAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL--- 386 (477)
Q Consensus 315 LAgll~Alr~~g-----~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l--- 386 (477)
.|+=.-.-...| ......|++|+|+|.+|+..+..+.. .|. +++++|.+.-.-. +...+
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~~~rle-~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVKE-QVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHHHHH-HHHHcCCe
Confidence 553332222222 13456899999999999998887754 252 4777777542110 00001
Q ss_pred ----c-----hhchhhccccCC------CCCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEEcC
Q 011816 387 ----Q-----HFKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 387 ----~-----~~k~~~a~~~~~------~~~L~eav~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+ +...-||+...+ ..-+.+.++. .|++|++.-.+| ++|+++++.|.. .-.|| =||
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp--GsvIV-DlA 284 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA--GSVIV-DLA 284 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC--CCEEE-Eee
Confidence 0 000122221110 0115556665 999999993333 599999999973 23344 343
Q ss_pred -CCCCCCCCC
Q 011816 447 -NPTSQSECT 455 (477)
Q Consensus 447 -NPt~~~E~t 455 (477)
.|--..|++
T Consensus 285 ~d~GGn~E~t 294 (511)
T TIGR00561 285 AEQGGNCEYT 294 (511)
T ss_pred eCCCCCEEEe
Confidence 243445555
No 107
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.25 E-value=0.97 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999998763 53 68888874
No 108
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=91.12 E-value=0.45 Score=51.31 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=67.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhh-CCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCC-----CCCHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~-~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L~ 404 (477)
.||+|+||||+ -+-.|+..+.+. ..++ ...|+|+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId----~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCC----HHHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444444544332 2342 4789999975 33322111222222222 112 25899
Q ss_pred HHhcccCCcEEEeccCC--------------------------CCC--------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 405 DAVKVIKPTILIGSSGV--------------------------GRT--------FTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 405 eav~~vkptvLIG~S~~--------------------------~g~--------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
||+++ +|.+|=.-.+ ||. +-.++++.|.+.|+..+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99998 8877633222 232 2258888999999999999999999
Q ss_pred CCCCCH
Q 011816 451 QSECTA 456 (477)
Q Consensus 451 ~~E~tp 456 (477)
..+|-
T Consensus 147 -~~vt~ 151 (437)
T cd05298 147 -AIVAE 151 (437)
T ss_pred -HHHHH
Confidence 44443
No 109
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.04 E-value=0.39 Score=42.58 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=31.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999875 65 79999998744
No 110
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.81 E-value=0.39 Score=48.95 Aligned_cols=124 Identities=20% Similarity=0.288 Sum_probs=75.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccC-CCCCHHHHhcccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~-~~~~L~eav~~vk 411 (477)
||.|+|+|..|..+|..++. .|+ ...++++|.+-=...+...++.+. .+|..... ...+. +++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999998765 254 368999997411001000002211 11211100 01344 55776
Q ss_pred CcEEEeccCCCCCC--------------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcCC
Q 011816 412 PTILIGSSGVGRTF--------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQHF 473 (477)
Q Consensus 412 ptvLIG~S~~~g~F--------------t~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsGs 473 (477)
+|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.+. -+-+|++|.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt 142 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGT 142 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccc
Confidence 88877554443111 146778888889999999999997 777777777651 234777764
No 111
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.56 E-value=1.2 Score=42.89 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=59.4
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc---cc-c--C--CCCCH
Q 011816 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H--E--PVNNL 403 (477)
Q Consensus 333 riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a---~~-~--~--~~~~L 403 (477)
||.|+| +|..|.++|..+.+. | .+++++|+. .++ +......+. .. . . ...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998753 4 467777653 111 211111111 10 0 0 11356
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 011816 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (477)
.++++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788876 88777 45444 3457777877654344799999999854
No 112
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.56 E-value=0.31 Score=50.69 Aligned_cols=104 Identities=25% Similarity=0.276 Sum_probs=62.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCC--CC-----CCCc--hhchhhc---
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQ--HFKKPWA--- 394 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~--r~-----~~l~--~~k~~~a--- 394 (477)
.+|++.||+|+|+|.-|..+|+.|+.+ |+ .+|.++|.+-+=.++ |. +++. ..|..-|
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~ 88 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKR 88 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHH
Confidence 578899999999999999999999764 65 689999996321111 00 0000 0011111
Q ss_pred -cc-cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 395 -HE-HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 395 -~~-~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
+. .+ .. .++.+.++. .|++|-++.-. =+..++-..+.....|.|++-
T Consensus 89 l~~inp~v~v~~~~~~~~~~~~~~~~~~--~DlVid~~Dn~--~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 89 LEEINSDVRVEAIVQDVTAEELEELVTG--VDLIIDATDNF--ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHHHCCCcEEEEEeccCCHHHHHHHHcC--CCEEEEcCCCH--HHHHHHHHHHHHhCCCEEEEe
Confidence 10 01 11 235566665 78888776532 245566666666778888754
No 113
>PLN02602 lactate dehydrogenase
Probab=90.54 E-value=0.54 Score=49.29 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=79.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCC---CCHHHHhc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 408 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~---~~L~eav~ 408 (477)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 355 3589999973111111101132222 22221 111 34444 67
Q ss_pred ccCCcEEEeccCCC---CCCCH------------HHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEc
Q 011816 409 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQ 471 (477)
Q Consensus 409 ~vkptvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAs 471 (477)
+ +|++|=+.+.+ | -|. ++++.|.+++...+|+-.|||. .....-+++++. -+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 6 99999665543 3 233 6788888999999999999998 777777777763 2457777
Q ss_pred C
Q 011816 472 H 472 (477)
Q Consensus 472 G 472 (477)
|
T Consensus 179 g 179 (350)
T PLN02602 179 G 179 (350)
T ss_pred c
Confidence 6
No 114
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.53 E-value=1 Score=46.28 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
=.-+|-+|++.=|+-.+-+++.+++|++|.+ -.|.-+|.||.. .|. .+.+|+++ .
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T----- 191 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T----- 191 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C-----
Confidence 3466788889999999999999999999998 789999998864 242 34455442 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
++|.+.++. +|++|-..+.++.|+.++|+ +..+|.=.
T Consensus 192 ------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk------~gavvIDv 228 (281)
T PRK14183 192 ------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK------EGAIVIDI 228 (281)
T ss_pred ------------cCHHHHHhh--CCEEEEecCcccccCHHHcC------CCcEEEEe
Confidence 236777887 99999999999999999997 55666543
No 115
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.52 E-value=0.6 Score=47.79 Aligned_cols=47 Identities=38% Similarity=0.523 Sum_probs=38.7
Q ss_pred HHHHHHHHhC--CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 317 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 317 gll~Alr~~g--~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
|++.+|+-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|+++++
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 5678888766 456689999999999999999888764 64 68999998
No 116
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.45 E-value=0.96 Score=46.43 Aligned_cols=94 Identities=22% Similarity=0.376 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++.=|+-.|-+++..+++|+|. |..|.-+|.+|... |. .+.++.++ .
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------t------ 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------T------ 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------C------
Confidence 46677888999999999999999999999 99999999999753 53 34444321 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP 448 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP 448 (477)
.+|.++++. +|++|-.-+.++.+++++++ +..+|.=.+ |+
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvgin~ 233 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVGMNR 233 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEeccee
Confidence 168888988 99999999999999998854 667777666 44
No 117
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.25 E-value=0.89 Score=46.75 Aligned_cols=111 Identities=17% Similarity=0.286 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++.=|+-.+-+++..++|++|.+. .|.-+|.||... |. .+ ...+..++++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~t------------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSRT------------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCCc-------------
Confidence 4667788999999999999999999999764 577777777531 10 00 12455555431
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCC---CCCCCCHHHHhc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPT---SQSECTAEEAYT 461 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt---~~~E~tpe~A~~ 461 (477)
.+|.+.++. +|++|+..+.++.|++++|+ +..+|.-.+ |+. -.-.+.+|++.+
T Consensus 196 -----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk------~GavVIDVGi~~~~~~l~GDVdf~~v~~ 252 (286)
T PRK14184 196 -----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK------PGAVVVDVGINRTDDGLVGDCDFEGLSD 252 (286)
T ss_pred -----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEeeeeccCCCccCCccHHHHHh
Confidence 358899998 99999999999999999994 566775544 332 113455666544
No 118
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.24 E-value=1.6 Score=45.20 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=75.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc--cCCCCCCCchhchhhccccCCCCCHHHHhc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 408 (477)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.-. ..+..-+|.+...++.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 48999999 9999998887764 244100011379999985422 111111233333233221111134567788
Q ss_pred ccCCcEEEeccCCC---CCCC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 409 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 409 ~vkptvLIG~S~~~---g~Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
+ .|++|=+.+.+ | .| +++.+.+.+++ +.-||+-.|||- .+..--+++++
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 142 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIAMKNA 142 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 7 99999665553 3 23 45777788889 499999999998 67776776665
No 119
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.06 E-value=0.98 Score=47.62 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=66.0
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC--------CCCchhchhhccc--
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~--------~~l~~~k~~~a~~-- 396 (477)
++|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=+ ..+.- +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999874 65 68999998733 22110 0111122111110
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 397 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 397 ---~~~---------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
.+. . .++.+.+++ .|++|.++.. .=++-.|-.++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 111 1 245566766 8999887763 235667777777778998865
No 120
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.04 E-value=0.77 Score=44.18 Aligned_cols=100 Identities=13% Similarity=0.245 Sum_probs=55.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 409 (477)
++.||.|+|+|..|.+++..+... |.. -.++++++++. ..+.+...+..|- .....++.++++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS------NVEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC------CHHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999988642 310 12346656542 0111222222221 1112456777764
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+|++| ++.++. .-+++++.++.+-+..+|+.++.-.
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC
Confidence 67666 444443 3477777776543344666666544
No 121
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.02 E-value=1.1 Score=45.95 Aligned_cols=92 Identities=18% Similarity=0.334 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++.-|+-.|.+++..++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 4567888899999999999999999999764 67778877754 24 246666541
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
..+|.+.++. +|++|...+.++.|++++|+ +..+|+=..
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik------~gavVIDvG 230 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK------EGAVVIDVG 230 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEee
Confidence 1368888987 99999999999999999995 566776544
No 122
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.94 E-value=1.6 Score=45.32 Aligned_cols=122 Identities=17% Similarity=0.103 Sum_probs=75.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc--cCCCCCCCchhchhhccccCCCCCHHHHhc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 408 (477)
-||.|+|| |..|..+|-.|+. .|+-.-+-...|.|+|.+.-. .++..-+|.+..-++.....-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 48999998 9999999998764 254100011279999986311 111111133332222221111135667788
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 409 ~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
+ .|++|=+.+.+ |- +=+++++.+++++. ..||+--|||. .++.--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 7 99998665553 31 12467788888987 99999999998 77777777766
No 123
>PRK14851 hypothetical protein; Provisional
Probab=89.88 E-value=1.4 Score=50.29 Aligned_cols=122 Identities=15% Similarity=0.129 Sum_probs=78.1
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC-------CCCchhchhhccc---
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 396 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~-------~~l~~~k~~~a~~--- 396 (477)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|-+=+-.++-. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578899999999999999999999875 75 79999997633222210 0111122222211
Q ss_pred --cC---------CC--CCHHHHhcccCCcEEEeccCCCCCC-CHHHHHHHHcCCCCcEEEEcC----------CCCCCC
Q 011816 397 --HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILALS----------NPTSQS 452 (477)
Q Consensus 397 --~~---------~~--~~L~eav~~vkptvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFaLS----------NPt~~~ 452 (477)
.+ .+ .++.+.+++ .|++|-..... .| ++..|...+..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 11 11 246677776 89998544321 12 344677777778899998754 676
Q ss_pred CCCHHHHhcccCC
Q 011816 453 ECTAEEAYTWSKV 465 (477)
Q Consensus 453 E~tpe~A~~~t~G 465 (477)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5777888877655
No 124
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.79 E-value=0.13 Score=47.65 Aligned_cols=89 Identities=25% Similarity=0.409 Sum_probs=50.5
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC-------------CcccCCCCCCCchhchhhcc
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~-------------GLi~~~r~~~l~~~k~~~a~ 395 (477)
+.-.||||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5568999999999999999998653 53 34444542 0111 00010100 00322
Q ss_pred c----cCC--CCCHHHHhcccCCcEEEecc-----CCCCCCCHHHHHHHH
Q 011816 396 E----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 434 (477)
Q Consensus 396 ~----~~~--~~~L~eav~~vkptvLIG~S-----~~~g~Ft~evv~~Ma 434 (477)
. .+. ...|.+.++. .|++|+.. ..+-+||+++++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 111 1368888887 89999753 345699999999996
No 125
>PRK05442 malate dehydrogenase; Provisional
Probab=89.78 E-value=2 Score=44.69 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=74.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc--cCCCCCCCchhchhhccccCCCCCHHHHhc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~eav~ 408 (477)
.||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. ..+..-+|.+...++-....-..+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC
Confidence 38999998 99999998877653 33100001289999985321 111111143333233222111135667788
Q ss_pred ccCCcEEEeccCC---CC-----------CCCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 409 VIKPTILIGSSGV---GR-----------TFTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 409 ~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
+ +|++|=+.+. +| .+=+++.+.+++++ +..||+-.|||. .++.--+++++
T Consensus 80 d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 80 D--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 7 9988855553 33 12345677778866 699999999998 77777777765
No 126
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.78 E-value=0.4 Score=48.64 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=53.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch--hhc--cc----cCCCCCH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWA--HE----HEPVNNL 403 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~--~~a--~~----~~~~~~L 403 (477)
.||.|+|+|+.|.++|..|... | .++.++|+..= +.+.+....+ .+. .. .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 4799999999999999998763 4 25777776311 0011111100 000 00 0112468
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
.|+++. .|++|=+ ... ...+++++.+. +..+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~~-v~~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVA-VPS-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEE-Cch-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 888875 7776633 222 23577777665 344667778864
No 127
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.60 E-value=1.8 Score=40.82 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
--+|-.|++.-|+..+-+++..+++++|.+. .|.-+|.||.. .|. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~-------------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK-------------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT--------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC--------------
Confidence 4567888999999999999999999999985 88888888765 232 34455543
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~ 431 (477)
.++|.+.++. +|++|-..+.++.++.++|+
T Consensus 70 ----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777776 99999999999999999996
No 128
>PRK07574 formate dehydrogenase; Provisional
Probab=89.60 E-value=3.6 Score=43.89 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=60.4
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHH
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+... .. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch-h-h---Hhhc--CceecCCHHH
Confidence 3458899999999999999999998643 64 6888887532 00 0 0 0001 0111246888
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+++. .|+++=.-- .-++|+++.+..|. +..++.=.|.
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR 285 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR 285 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC
Confidence 8876 787763321 12578888888885 4566665554
No 129
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.49 E-value=1.2 Score=46.01 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++.=|+-.+.+++.++++|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 4567788888889999999999999999 999999999999753 53 46666532 11
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+|.|+++. +|++|-.-+.+..+++++++ +.-+|.=++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~lk------~GavVIDvG 230 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDWIK------PGATVIDVG 230 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchheec------CCCEEEEcC
Confidence 37888887 99999988888888887743 566777666
No 130
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.41 E-value=4.4 Score=41.97 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=58.0
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHH
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+. -...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999998643 64 578888742 1 1 00 00110 11236777
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aR 241 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTAR 241 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcC
Confidence 7776 777663321 12567777777775 4566665554
No 131
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=89.37 E-value=0.49 Score=45.60 Aligned_cols=110 Identities=15% Similarity=0.277 Sum_probs=67.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-CC-----CCCHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLLDA 406 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~-----~~~L~ea 406 (477)
||+|+||||+-.. .++...+.+...++ ...|+|+|.+ ..|-+.....-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998543 34444444434453 4689999985 233111112223333321 12 2589999
Q ss_pred hcccCCcEEEeccCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 407 VKVIKPTILIGSSGVG----------------------------RTFT--------KEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 407 v~~vkptvLIG~S~~~----------------------------g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+++ +|.+|=.-.+| |.|. .|+.+.|.+++++.-||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 998 99887443333 2221 47889999999999999999999
Q ss_pred CCCCCH
Q 011816 451 QSECTA 456 (477)
Q Consensus 451 ~~E~tp 456 (477)
+++|-
T Consensus 148 -~~vt~ 152 (183)
T PF02056_consen 148 -GIVTE 152 (183)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 56553
No 132
>PLN02306 hydroxypyruvate reductase
Probab=89.27 E-value=3.8 Score=43.65 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=79.2
Q ss_pred cCCCceeccCC---CchHHHHHHHHHHHHHHh---------------------CCCCccceEEEeCcchHHHHHHHHHHH
Q 011816 297 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 297 r~~~~~FnDDi---QGTaaV~LAgll~Alr~~---------------------g~~l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
+..|.|.|--- ..+|=-+++-+|+..|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 35677777532 233444566666665431 345889999999999999999999865
Q ss_pred HHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc--------c--cCCCCCHHHHhcccCCcEEEec----
Q 011816 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 418 (477)
Q Consensus 353 ~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~--------~--~~~~~~L~eav~~vkptvLIG~---- 418 (477)
+| |+ +++.+|+..- . + +......+.. . .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T--R-LEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h--h-hhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 6888887421 0 0 1110001100 0 0112479999987 8988863
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 419 SGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 419 S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
....|.|+++.++.|. +..++.=.|.
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~aR 273 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNASR 273 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECCC
Confidence 1223689999999996 4556665553
No 133
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.14 E-value=0.6 Score=49.03 Aligned_cols=106 Identities=23% Similarity=0.390 Sum_probs=73.3
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCCCHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~ 404 (477)
...-|++|+|.|-+|+--|++.+ |+. .++.+.|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999999864 432 467777763 333 44444445433 12234699
Q ss_pred HHhcccCCcEEEec-----cCCCCCCCHHHHHHHHcCCCCcEE----------EEcCCCCCCCCCCHHH
Q 011816 405 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAEE 458 (477)
Q Consensus 405 eav~~vkptvLIG~-----S~~~g~Ft~evv~~Ma~~~erPII----------FaLSNPt~~~E~tpe~ 458 (477)
|++++ +|.+||. +..|.+.|+|+++.|. +..+| |-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99987 9999987 4456689999999996 34443 5556777777766653
No 134
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.89 E-value=1 Score=45.50 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=62.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc-C
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 411 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v-k 411 (477)
||-|+|.|..|.++|..+... | -++.+.|+. ..+ ....++. ......++.+.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~~---~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QDA---VKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999998653 4 256666652 111 1111111 111224566655432 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHH
Q 011816 412 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAE 457 (477)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~~E~tpe 457 (477)
+|++|= +.+.+ ..+++++.++.. .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44454 888898888754 3568999999876 454444
No 135
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.87 E-value=1.4 Score=45.54 Aligned_cols=96 Identities=15% Similarity=0.290 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|.+|++.-++..+.+++.+++||+|.+. .|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 3456678889999999999999999999764 677788887642211 11 244444432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
..+|.+.++. +|++|+..+.++.|++++|+ +..+|.-.+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDVg 235 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDVG 235 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEee
Confidence 1358888987 99999999999999999994 566775544
No 136
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.81 E-value=0.97 Score=45.72 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|++.+++..|.+. +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 46677887666653 4599999999999999888764 364 579999884
No 137
>PRK08374 homoserine dehydrogenase; Provisional
Probab=88.60 E-value=2.8 Score=43.63 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=63.9
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc---hhchhhccc---c---C-
Q 011816 332 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---HFKKPWAHE---H---E- 398 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~---~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~---~~k~~~a~~---~---~- 398 (477)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-+.|++|-+...+.-++. .+++.+... . .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 689999999999999999976 333334532 1224466999988775531121 122222110 0 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
..-++.|.++...+||+|-+++.. ...+-+.+.+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 012688888777899999999643 33333444444 4678885
No 138
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.60 E-value=1.3 Score=48.13 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcC-CCc--eeccCCCchHHHHHHHHHHHHHHh--------CCCCccc
Q 011816 264 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEH 332 (477)
Q Consensus 264 efv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alr~~--------g~~l~d~ 332 (477)
+.+..+.... |+ |..|=+....-.++.++|.- .+| ++||+..+.+....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334444444 43 55555777778888999973 455 357777788888888888877654 1223457
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
++||+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999988765
No 139
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.56 E-value=1.9 Score=44.43 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc
Q 011816 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (477)
Q Consensus 312 aV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k 390 (477)
-+|-.|++.=++-.+-+++.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 456678888888899999999999999764 67778877754 242 46666653
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHHHhc
Q 011816 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEAYT 461 (477)
Q Consensus 391 ~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~E~tpe~A~~ 461 (477)
.++|.+.+++ +|++|...|.++.++.++|+ +..+|+=-. |+.-.--+.+|++.+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik------~gavVIDvGin~~~~GDVd~~~v~~ 247 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS------EGAVLLDAGYNPGNVGDIEISKAKD 247 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC------CCCEEEEecCcccccCCcCHHHHhh
Confidence 1357788887 99999999999999999997 455655433 332223455555543
No 140
>PRK08291 ectoine utilization protein EutC; Validated
Probab=88.48 E-value=1.6 Score=44.81 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~ 396 (477)
|.+++..+.. -..++++|+|+|..|..++..+... .++ +++.++|+. ..+ .......+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4555555432 2347999999999998888776542 233 578888762 221 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 011816 397 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (477)
Q Consensus 397 ----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~ 458 (477)
.....++.++++. +|++|-++.. .-+|+.++++. ..-|.++ |+-..+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123678999986 8999876543 34677777653 1223333 4333345888765
No 141
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.45 E-value=1.8 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.2
Q ss_pred CccceEEEeCcchHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
-...||.|+|||+-|+++|..+..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 345799999999999999999976
No 142
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.41 E-value=2 Score=44.05 Aligned_cols=91 Identities=19% Similarity=0.345 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++.=|+-.+-+++.++++++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4568888899999999999999999999764 67788888754 242 46666652
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
..+|.+.+++ +|++|-..+.++.|++|+|+ +..||+=-
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDv 229 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK------EGAIVIDV 229 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCcEEEEe
Confidence 1257888887 99999999999999999997 56677644
No 143
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.38 E-value=0.66 Score=47.39 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=76.4
Q ss_pred EeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 011816 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 415 (477)
Q Consensus 336 ~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvL 415 (477)
|+|||..|..+|.+|+. .|+ ...|.|+|.+-=..++-.-+|.+....+.+...-..+-.+.+++ +|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 255 35899999842111111111332221111110001233567777 9999
Q ss_pred EeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEEEcCC
Q 011816 416 IGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKV--QTIILQHF 473 (477)
Q Consensus 416 IG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G--~aifAsGs 473 (477)
|=+.+.+ |- +=+++++.|.+++..-+|+-.|||. ++...-+++++.= +-+|++|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHHEEeccc
Confidence 9776654 21 1246778888899999999999998 6777777776521 34777764
No 144
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.81 E-value=5.6 Score=41.25 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=44.7
Q ss_pred CCCceecc-CC--CchHHHHHHHHHHHHHH-------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHH
Q 011816 298 TTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (477)
Q Consensus 298 ~~~~~FnD-Di--QGTaaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~ 355 (477)
..|.+.|- +. +.+|=-+++-+|+.+|- .+..|.+.+|.|+|.|..|..+|+.+..
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~--- 167 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG--- 167 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh---
Confidence 45555552 22 23444566666666553 2346888999999999999999999864
Q ss_pred hhCCCChhhhcCeEEEEccC
Q 011816 356 KQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 356 ~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|. +++.+|+.
T Consensus 168 --~G~-------~V~~~d~~ 178 (330)
T PRK12480 168 --FGA-------TITAYDAY 178 (330)
T ss_pred --CCC-------EEEEEeCC
Confidence 254 68888864
No 145
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.78 E-value=0.77 Score=49.77 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=62.8
Q ss_pred eeeecCCcccHHHHHHHHcC-CCc--eeccCCCchHHHHHHHHHHHHHHhCC--------CCccceEEEeCcchHHHHHH
Q 011816 279 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIGG--------TLAEHRFLFLGAGEAGTGIA 347 (477)
Q Consensus 279 Iq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alr~~g~--------~l~d~riv~~GAGsAg~Gia 347 (477)
|.+|=+....-.++.++|.- .+| ++||+....+....+-++.+++.... .-.+..+||+|||+||++.|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777777889999973 444 45777778888888888888875322 23456899999999999999
Q ss_pred HHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 348 ELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 348 ~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 98865 364 56666654
No 146
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.65 E-value=1.1 Score=44.84 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=57.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCC-CCCCCch--hc-hhhccccCCCCCHHHHhc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FK-KPWAHEHEPVNNLLDAVK 408 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~-r~~~l~~--~k-~~~a~~~~~~~~L~eav~ 408 (477)
||.|+|+|..|..+|..|... | .+++++|+..-.... +...... .. ...........++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 4 357777774211000 0000000 00 000000011246777777
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 011816 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (477)
. +|++| ++... ...+++++.+..+ .+..+|..++|-..
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 5 78777 33333 3677888877754 34568888887543
No 147
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.56 E-value=2.3 Score=44.00 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+-.-+|-+|++.=|+-.|-+++.++++++|.+. .|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 344667788888999999999999999999764 57777777753 2211 01245555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.++|.+.+++ +|++|-..|.++.+++++|+ +..||+=-.
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDvG 237 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDVG 237 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEecC
Confidence 1358888887 99999999999999999997 566776554
No 148
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.54 E-value=2 Score=43.24 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
+||.|+|+|..|.+||..++.. |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 4799999999999999998653 53 6888886
No 149
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=87.48 E-value=2.3 Score=44.07 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
-.-+|-+|++.=++-.|-+++.+++||+|-+. .|.-+|.||.. .| ..+.+|+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 34567788889999999999999999999764 57777777754 24 256777653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
.++|.+.+++ +|++|-..+.++.|+.|+|+ +..||+=
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk------~gavVID 237 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK------PGAAVID 237 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEE
Confidence 1357888887 99999999999999999997 4556643
No 150
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.47 E-value=2.3 Score=43.80 Aligned_cols=94 Identities=17% Similarity=0.326 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+=.-+|-+|++.=++..+-+++..++|++|.+. .|.-+|.||.. .|. .+.+|+|+.
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~T----------- 193 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSKT----------- 193 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCCC-----------
Confidence 345678888999999999999999999999764 67778887754 242 455665531
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.+|.+.+++ +|++|-..|.++.+++++|+ +..||.=..
T Consensus 194 -------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk------~GavVIDvG 231 (288)
T PRK14171 194 -------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN------PESIVIDVG 231 (288)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC------CCCEEEEee
Confidence 357888887 99999999999999999997 556775443
No 151
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.38 E-value=8.6 Score=39.58 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..|.+.++.|+|-|..|..+|+++. + .|+ +++.+|+.
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~ 154 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRS 154 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCC
Confidence 45789999999999999999998664 3 264 68888875
No 152
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.35 E-value=2.5 Score=43.68 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++.-|+..+.+++.+++|++|.+. .|.-+|.||.. .|. .+.+|+|+-
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVt~chs~T------------- 194 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----ENC-------TVTTVHSAT------------- 194 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CCC-------EEEEeCCCC-------------
Confidence 4667888899999999999999999999764 57777777753 232 466666531
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
++|.+.+++ +|++|-..|.++.++.++|+ +..||+=-
T Consensus 195 -----------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gaiVIDV 231 (294)
T PRK14187 195 -----------RDLADYCSK--ADILVAAVGIPNFVKYSWIK------KGAIVIDV 231 (294)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 347788887 99999999999999999997 56676543
No 153
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.31 E-value=0.65 Score=45.12 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.2
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|++.||+++|+|..|..||+.|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467889999999999999999999764 65 689999986
No 154
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=87.16 E-value=9.5 Score=38.53 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=59.1
Q ss_pred HHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-
Q 011816 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE- 396 (477)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~- 396 (477)
.+.|++..+. ..+++++|.|+|+.|...+.+... .|. ++++.+|+. .+| ++-.++.=|..
T Consensus 158 a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~~----~~~---~~~a~~lGa~~v 218 (343)
T PRK09880 158 AIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADVS----PRS---LSLAREMGADKL 218 (343)
T ss_pred HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeCC----HHH---HHHHHHcCCcEE
Confidence 3555554443 368899999999888877655432 353 467777753 111 11111100110
Q ss_pred -cCCCCCHHHHhccc-CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh
Q 011816 397 -HEPVNNLLDAVKVI-KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 460 (477)
Q Consensus 397 -~~~~~~L~eav~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~ 460 (477)
.....++.+.++.- ++|++|=+++.+ ..-++.++.|+. .-.|.-+..+...++..+.+.+
T Consensus 219 i~~~~~~~~~~~~~~g~~D~vid~~G~~-~~~~~~~~~l~~---~G~iv~~G~~~~~~~~~~~~~~ 280 (343)
T PRK09880 219 VNPQNDDLDHYKAEKGYFDVSFEVSGHP-SSINTCLEVTRA---KGVMVQVGMGGAPPEFPMMTLI 280 (343)
T ss_pred ecCCcccHHHHhccCCCCCEEEECCCCH-HHHHHHHHHhhc---CCEEEEEccCCCCCccCHHHHH
Confidence 00112344444322 378888777643 223456666652 2233333333333556655543
No 155
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.13 E-value=3 Score=42.74 Aligned_cols=125 Identities=22% Similarity=0.253 Sum_probs=75.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC---cccCCCCCCCchhchhhcccc--CCCCCHHH
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG---LIVSSRKDSLQHFKKPWAHEH--EPVNNLLD 405 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G---Li~~~r~~~l~~~k~~~a~~~--~~~~~L~e 405 (477)
.||.|+|| |..|..+|..++. .|+ ...++++|++- .+...+.+ +.+....+.... ....+ .+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~~~l~~~~~d-l~d~~~~~~~~~~i~~~~d-~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSLEKLKGLRLD-IYDALAAAGIDAEIKISSD-LS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccccccccccch-hhhchhccCCCcEEEECCC-HH
Confidence 38999998 9999999998865 354 24799999852 11111111 111000000000 00124 45
Q ss_pred HhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEE
Q 011816 406 AVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTII 469 (477)
Q Consensus 406 av~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aif 469 (477)
.+++ +|++|=+.+.+ | .+-+++++.|.+++...+|+-.+||. .+....+++++. .+-+|
T Consensus 69 ~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~~~vi 143 (309)
T cd05294 69 DVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDKNRVF 143 (309)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCHHHEe
Confidence 5776 89888666542 1 24567788888899999999999998 555555655431 23467
Q ss_pred EcCC
Q 011816 470 LQHF 473 (477)
Q Consensus 470 AsGs 473 (477)
++|.
T Consensus 144 G~gt 147 (309)
T cd05294 144 GLGT 147 (309)
T ss_pred eccc
Confidence 7763
No 156
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=86.90 E-value=1.2 Score=45.27 Aligned_cols=123 Identities=19% Similarity=0.229 Sum_probs=76.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC-CcccCCCCCCCchhchhhcccc-CCCCCHHHHhcccC
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 411 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~vk 411 (477)
|.|+|||..|..+|-.++. .|+ -..+.++|.+ .++..-.. +|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~~-DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDAL-DLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHH-hHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999976654 365 2589999973 22111111 2433332221100 01234 456776
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcCC
Q 011816 412 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIILQHF 473 (477)
Q Consensus 412 ptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifAsGs 473 (477)
.|++|=+.+.+ |- +=+++++.+.++++.-+|+-.|||. ++..+-+.+++ .-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88888555543 21 1246777888899999999999998 77777776663 2344777753
No 157
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.90 E-value=0.65 Score=46.00 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=64.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC-------CCchhchhhcc----
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-------SLQHFKKPWAH---- 395 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~-------~l~~~k~~~a~---- 395 (477)
.+|++.||+++|+|..|..+|+.|+.+ |+ ++|.++|.+=+=.++-.. ++-..|..-|.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~ 88 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALT 88 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHH
Confidence 468889999999999999999999764 75 689999987332211100 01111111110
Q ss_pred c-c---------CCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 396 E-H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 396 ~-~---------~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
. . ... .++.+.++. .|++|-++... -+...+-.++.....|+|++-+
T Consensus 89 ~inp~v~i~~~~~~i~~~~~~~~~~~--~DlVvd~~D~~--~~r~~ln~~~~~~~ip~v~~~~ 147 (240)
T TIGR02355 89 QINPHIAINPINAKLDDAELAALIAE--HDIVVDCTDNV--EVRNQLNRQCFAAKVPLVSGAA 147 (240)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhhc--CCEEEEcCCCH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 0 0 011 134455554 78888766532 4566677777777888887643
No 158
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.85 E-value=2.7 Score=43.25 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+=.-+|.+|++.=++-.|-+++.+++|++|.+. .|--+|.||.. .|. .+.+|+|+ .
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 445678888999999999999999999999764 67778877753 242 45556553 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
++|.+.++. +|++|-..|.++.|++++|+ +..||+=-.
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDvG 229 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVG 229 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEec
Confidence 348888887 99999999999999999997 566776544
No 159
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.83 E-value=0.52 Score=47.06 Aligned_cols=32 Identities=38% Similarity=0.586 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 4799999999999999998753 43 58888864
No 160
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=86.69 E-value=3.1 Score=42.35 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCC-CChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G-~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|-+|+.-|+.. | ++ ..+|+++|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 5899999999999998888764 5 32 4678877763
No 161
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.63 E-value=2.6 Score=43.32 Aligned_cols=94 Identities=19% Similarity=0.351 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++.-++-.|-+++.+++|++|.+ ..|.-+|.||... ..|. .+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~a-------tVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SENA-------TVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCCC-------EEEEeCCC--------------
Confidence 466788889999999999999999999975 4677788777531 0132 35556552
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
..+|.+.+++ +|++|-..+.++.+++++|+ +..||+=-.
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik------~GavVIDvG 232 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK------PGAAVLDVG 232 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC------CCCEEEEcc
Confidence 1358888987 99999999999999999997 556665443
No 162
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.57 E-value=1.8 Score=42.80 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=56.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCC-CCCCCch--h-chhhccccCCCCCHHHHhc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--F-KKPWAHEHEPVNNLLDAVK 408 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~-r~~~l~~--~-k~~~a~~~~~~~~L~eav~ 408 (477)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +...+.- . ..... ......+..++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999998753 4 36778877 210000 0000100 0 00000 0011245666555
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 011816 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (477)
. +|++|=+... ...+++++.++.+ .++.+|+.+.|.-.
T Consensus 68 ~--~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 P--FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred C--CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 4 7866633322 3568888888753 34567888999863
No 163
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.46 E-value=6.6 Score=40.30 Aligned_cols=117 Identities=15% Similarity=0.234 Sum_probs=70.3
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHHh------------------------CCCCccceEEEeCcchHHHHHHHHH
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~~------------------------g~~l~d~riv~~GAGsAg~Gia~ll 350 (477)
..|.|.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666321 335556677777766532 2468999999999999999999998
Q ss_pred HHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCC
Q 011816 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFT 426 (477)
Q Consensus 351 ~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft 426 (477)
.. + |+ +|+.+|+.+- .. + . .| ...+|.|+++. .|+++=.- ...+.|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~--~----~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N--E----EY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c--c----Cc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 53 2 65 6888888531 10 0 0 01 11356666665 66655221 1124666
Q ss_pred HHHHHHHHcCCCCcEEEEcC
Q 011816 427 KEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLS 446 (477)
++.++.|. +..++.=.|
T Consensus 216 ~~~~~~Mk---~~a~lIN~a 232 (311)
T PRK08410 216 YKELKLLK---DGAILINVG 232 (311)
T ss_pred HHHHHhCC---CCeEEEECC
Confidence 66666664 445555433
No 164
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.36 E-value=2.1 Score=43.49 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=35.0
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~ 66 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVC 66 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEec
Confidence 468899999999999999999999874 65 689999987543
No 165
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.29 E-value=3 Score=42.97 Aligned_cols=108 Identities=17% Similarity=0.351 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
=.-+|-+|++.-|+-.|-+++..++|++|.+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 34667788888999999999999999999764 57777777753 242 45566542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCC----CCCCCCHHHHhc
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPT----SQSECTAEEAYT 461 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt----~~~E~tpe~A~~ 461 (477)
..+|.+.++. +|++|-..+.++.|++++|+ +..||+=.. |+. -.--+.+|++++
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk------~GavVIDvGin~~~~gkl~GDvdfe~~~~ 249 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK------PGAIVIDVGMDRDENNKLCGDVDFDDVVE 249 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEEccCcccCCCCeecccchHHHHh
Confidence 1347888887 99999999999999999997 566775443 432 001156666654
No 166
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.21 E-value=0.68 Score=44.40 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.2
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 468899999999999999999999875 75 6899999874
No 167
>PRK06487 glycerate dehydrogenase; Provisional
Probab=86.17 E-value=7.5 Score=40.02 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=68.4
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHHh------------------------CCCCccceEEEeCcchHHHHHHHHH
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~~------------------------g~~l~d~riv~~GAGsAg~Gia~ll 350 (477)
..|.+.|--- +.+|=-+++-+|+..|-. +..|.++++.|+|.|..|-.+|+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666321 345556677777765532 2358899999999999999999998
Q ss_pred HHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 011816 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 426 (477)
Q Consensus 351 ~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~----S~~~g~Ft 426 (477)
.. + |+ +|+.+|+.+- ... + ...+|.|+++. .|+++=. ....|.|+
T Consensus 168 ~~-f----gm-------~V~~~~~~~~-----~~~--------~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EA-F----GM-------RVLIGQLPGR-----PAR--------P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hh-C----CC-------EEEEECCCCC-----ccc--------c----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 53 2 65 6777786521 000 0 01256666665 6666521 11135666
Q ss_pred HHHHHHHHcCCCCcEEEEcC
Q 011816 427 KEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLS 446 (477)
++.+..|. +..++.=.|
T Consensus 217 ~~~~~~mk---~ga~lIN~a 233 (317)
T PRK06487 217 ARELALMK---PGALLINTA 233 (317)
T ss_pred HHHHhcCC---CCeEEEECC
Confidence 66666664 444555433
No 168
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.91 E-value=6.3 Score=40.63 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=30.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+.++++.|+|.|..|..+|+.+... |+ +++.+|+.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~ 168 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRS 168 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 468889999999999999999999753 65 57777763
No 169
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=85.82 E-value=1.2 Score=40.61 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+|||+|+|.||+..|..+.. .| .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 68999999999999999973 23 4788886643
No 170
>PRK06141 ornithine cyclodeaminase; Validated
Probab=85.76 E-value=3.5 Score=42.18 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=65.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc---cCCCCCHHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~---~~~~~~L~ea 406 (477)
...+++|+|+|..|..++..+... .+ .++|+++|+. ..+ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999999877553 13 2678888763 222 22233333221 1123678999
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 011816 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (477)
Q Consensus 407 v~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~ 458 (477)
+++ +|++|-++... .+|+.++++ +.-.|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 986 99998776543 346666653 22244444 5566678999864
No 171
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.69 E-value=2.6 Score=41.51 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=54.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCC-CCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~-r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
||.|+|+|+.|..+|..|.+. | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999998753 4 368888874211000 0000100000000000112345443 3 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCCC
Q 011816 412 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 450 (477)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 450 (477)
+|++| ++... .-++++++.++..- ++-+|+.+.|.-.
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 78777 44433 34688888887643 3346666888753
No 172
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.43 E-value=0.96 Score=44.84 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC--------CCCchhchhhcc---
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH--- 395 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~--------~~l~~~k~~~a~--- 395 (477)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+ .|..+.- +.+-..|..-|.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D-~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l 95 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD-TVSLSNLQRQVLHDDATIGQPKVESARAAL 95 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-EECcchhhhhhcCChhhCCChHHHHHHHHH
Confidence 478899999999999999999999874 65 699999987 3332210 001111211111
Q ss_pred -c-cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 396 -E-HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 396 -~-~~~---------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
. .+. . .++.+.++. .|++|.++... -+...+...+..+..|+|.+-++
T Consensus 96 ~~lnp~v~i~~~~~~i~~~~~~~~~~~--~DiVi~~~D~~--~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 96 ARINPHIAIETINARLDDDELAALIAG--HDLVLDCTDNV--ATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred HHHCCCCEEEEEeccCCHHHHHHHHhc--CCEEEecCCCH--HHHHHHHHHHHHhCCEEEEeeec
Confidence 0 111 1 124455665 89999887633 24556777777778999987554
No 173
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.41 E-value=0.45 Score=52.19 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=27.7
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCe
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (477)
.+..+|+|+|||.||+..|++|.+... .+..=|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 345689999999999999999988621 2445566664
No 174
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.31 E-value=0.74 Score=44.19 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=34.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 568899999999999999999999875 75 7999999873
No 175
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.21 E-value=7.4 Score=42.87 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=47.0
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHh
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (477)
..++|.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 22455567777776653 24568899999999999999999998643
Q ss_pred hCCCChhhhcCeEEEEccC
Q 011816 357 QTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD~~ 375 (477)
|+ +++.+|+.
T Consensus 163 --G~-------~V~~~d~~ 172 (526)
T PRK13581 163 --GM-------KVIAYDPY 172 (526)
T ss_pred --CC-------EEEEECCC
Confidence 64 68888874
No 176
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.18 E-value=3.8 Score=42.36 Aligned_cols=95 Identities=18% Similarity=0.290 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++.=|+-.+-+++.+++|++|.+. .|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 3567788888899999999999999999764 57777777753 23210 0124444443
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
.++|.+.+++ +|++|-..+.++.+++++|+ +..+|+=-
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~gavVIDv 232 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK------EGAVVIDV 232 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 1368888887 99999999999999999997 56666533
No 177
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=85.06 E-value=3.2 Score=45.19 Aligned_cols=133 Identities=10% Similarity=-0.032 Sum_probs=80.1
Q ss_pred cceEEEeCc-chHHHHHHHHHHHH-HHh-hCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHh
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALE-ISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~-~~~-~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav 407 (477)
=.||.|+|| |..|..+|-.|+.. +.. .+|+ -..+.++|.+-=...+-.-+|.+..-++.+...-..+-.+..
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVF 174 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHh
Confidence 379999999 99999999988652 100 0133 247888887422111111113332223322111012345667
Q ss_pred cccCCcEEEeccCCC---CC-----------CCHHHHHHHHc-CCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 011816 408 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIIL 470 (477)
Q Consensus 408 ~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~-~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifA 470 (477)
+. +|++|=+.+.+ |- +=+++.+.+.+ .++..||+-.|||- .+..--+++++. -.-+|.
T Consensus 175 kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViG 249 (444)
T PLN00112 175 QD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFH 249 (444)
T ss_pred Cc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEE
Confidence 77 99998776654 21 12467778888 58999999999997 677777777662 245677
Q ss_pred cCC
Q 011816 471 QHF 473 (477)
Q Consensus 471 sGs 473 (477)
||.
T Consensus 250 tgT 252 (444)
T PLN00112 250 ALT 252 (444)
T ss_pred eec
Confidence 664
No 178
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=84.97 E-value=8 Score=37.98 Aligned_cols=128 Identities=21% Similarity=0.232 Sum_probs=63.6
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
+..+.|++..+. ..+.+++|+|+|+.|...+.+.. + .|. ++++.+|+. ..| ..+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak-~----~G~------~~Vi~~~~~----~~r--------~~~a~ 162 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAA-A----AGA------ARVVAADPS----PDR--------RELAL 162 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CEEEEECCC----HHH--------HHHHH
Confidence 344556665544 37889999999988777655543 2 364 468877642 111 11221
Q ss_pred cc-----CCCCCHHHHh----cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCc
Q 011816 396 EH-----EPVNNLLDAV----KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQ 466 (477)
Q Consensus 396 ~~-----~~~~~L~eav----~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~ 466 (477)
.. -......+.+ ..-.+|++|-+++.+..+ ++.++.+.. .-+=+++.+..|....++.+.+.+. +..
T Consensus 163 ~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~-~~~~~~l~~-~G~iv~~G~~~~~~~~~i~~~~~~~--~~~ 238 (280)
T TIGR03366 163 SFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAV-RACLESLDV-GGTAVLAGSVFPGGPVALDPEQVVR--RWL 238 (280)
T ss_pred HcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHH-HHHHHHhcC-CCEEEEeccCCCCCceeeCHHHHHh--CCc
Confidence 10 0001112222 223579999887754322 234555431 2222334432222234677766643 344
Q ss_pred EEEEc
Q 011816 467 TIILQ 471 (477)
Q Consensus 467 aifAs 471 (477)
-|..|
T Consensus 239 ~i~g~ 243 (280)
T TIGR03366 239 TIRGV 243 (280)
T ss_pred EEEec
Confidence 45543
No 179
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=84.91 E-value=1.9 Score=46.93 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.|++.+++..+.++++.+++|+|+|.+|.+++..+.. .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 4778888888889999999999999888888887764 252 6777775
No 180
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.69 E-value=1.4 Score=45.42 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (477)
..||.|+|||+-|..+|..+..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998875
No 181
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=84.42 E-value=2.4 Score=42.19 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
-.|++.+++..+...+..+++|+|+|.+|.+++..+.+ .| .+++++|+
T Consensus 101 ~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R 148 (270)
T TIGR00507 101 GIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANR 148 (270)
T ss_pred HHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeC
Confidence 34566667654555667899999999888888887764 24 26888876
No 182
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=84.22 E-value=0.48 Score=56.05 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|++.||+++|||..|+-+++.|+.+ |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 468889999999999999999999875 55211 13689999987
No 183
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=84.19 E-value=2.3 Score=46.29 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.||.|+|+|..|.+||..++.+ |. ++.++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 3799999999999999998763 54 5777776
No 184
>PRK07680 late competence protein ComER; Validated
Probab=84.11 E-value=2.2 Score=42.29 Aligned_cols=98 Identities=12% Similarity=0.248 Sum_probs=53.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkp 412 (477)
+|.|+|+|..|..+|..|... |.- ...+++++|++ .. ........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999988653 420 12467777763 11 1111111110 00112356666654 6
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 011816 413 TILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (477)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (477)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 7665 23233 3456677766543 23457777777663
No 185
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.10 E-value=2.3 Score=44.24 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.||.|+|||..|.|||..++.+ |. ++.++|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999998764 64 5666665
No 186
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.04 E-value=2.7 Score=41.15 Aligned_cols=95 Identities=12% Similarity=0.223 Sum_probs=51.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
.||.|+|+|..|..+|..+... |. ...+++++|+.. +.....+..|- ..-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~g--~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEYG--VRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhcC--CeecCChHHHHhc--
Confidence 4799999999999999988653 42 124677777631 11111111110 0112345555543
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+|++| ++..+ ...+++++.+..+. ..+|..++|-+
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi 97 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGV 97 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCC
Confidence 56555 33333 34556666665433 24666666655
No 187
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=83.99 E-value=8.3 Score=42.47 Aligned_cols=66 Identities=24% Similarity=0.226 Sum_probs=46.1
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHh
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (477)
..|+|.|--- +.+|=-+++.+|+..|- .|..|.++++.|+|-|..|-.+|+.+..
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~---- 159 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA---- 159 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh----
Confidence 4566666321 23455566666766542 2556899999999999999999999864
Q ss_pred hCCCChhhhcCeEEEEccC
Q 011816 357 QTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+ +++.+|+.
T Consensus 160 -fG~-------~V~~~d~~ 170 (525)
T TIGR01327 160 -FGM-------KVLAYDPY 170 (525)
T ss_pred -CCC-------EEEEECCC
Confidence 264 68888874
No 188
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=83.92 E-value=0.52 Score=51.58 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
+...+.||||+|||.||++.|..|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 44566799999999999999999984
No 189
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.69 E-value=5.6 Score=40.14 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=56.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-CCCCCHHHHhccc-
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI- 410 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~v- 410 (477)
||.|+|.|..|.++|..|... |. +++++|+.. .+ .. .++... ....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRNP----EA---VE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998753 42 577777741 11 11 222211 1235677877765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (477)
++|++|=+-. .....+++++.+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3776653322 33456666665543 34567888888644
No 190
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=83.66 E-value=8.7 Score=39.79 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHH
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIA 351 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~ 351 (477)
|..|.++++.|+|.|..|..+|+.+.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~ 165 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAH 165 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHH
Confidence 45689999999999999999999875
No 191
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.62 E-value=2.9 Score=42.40 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998763 4 356677764
No 192
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.61 E-value=4.9 Score=41.38 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
=.-+|-.|++.=|+-.|-+++.+++|++|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------------
Confidence 34677888889999999999999999999764 67778877754 242 45555442
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
..+|.+.++. +|++|-..+.++.|+.++|+ +..||+=
T Consensus 190 -----------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk------~GavVID 226 (282)
T PRK14169 190 -----------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK------PGAVVID 226 (282)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCcEEEE
Confidence 1248888887 99999999999999999997 5566653
No 193
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.41 E-value=1.6 Score=38.89 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
||+++|+|..|..+|+.|+.. |+ ++|.++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCC
Confidence 689999999999999999874 65 7899999873
No 194
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=83.39 E-value=3.6 Score=42.88 Aligned_cols=114 Identities=21% Similarity=0.353 Sum_probs=70.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC-CcccCCCCCCCchhchhhccccCCC---CCHHHHh
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAV 407 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~~a~~~~~~---~~L~eav 407 (477)
.||.++|||..|-..|-+|+. .++. +.+.|+|-. +...-...| |.+.. .+....... .+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999988843 3442 489999987 221111112 33221 222111111 23 4557
Q ss_pred cccCCcEEEeccCC---CC-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 408 KVIKPTILIGSSGV---GR-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 408 ~~vkptvLIG~S~~---~g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
++ +|+.|=+.+. +| .+-+++.+.+++++++.||+-.|||. -++.--+++.+
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv---D~~ty~~~k~s 132 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV---DILTYIAMKFS 132 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH---HHHHHHHHHhc
Confidence 76 8988744443 34 24467889999999999999999998 34444444433
No 195
>PLN03139 formate dehydrogenase; Provisional
Probab=83.16 E-value=8.5 Score=41.14 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=59.7
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHH
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... ..+ ..+..-+ ....+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~----~~~---~~~~~g~---~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM----DPE---LEKETGA---KFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc----chh---hHhhcCc---eecCCHHH
Confidence 4568999999999999999999999642 64 5777887532 001 0110001 11246888
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 406 av~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+++. .|+++=..- .-++|+++.+..|. +..+++=.|.
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR 292 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR 292 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC
Confidence 8876 777763221 12578888888885 4556665443
No 196
>PLN02527 aspartate carbamoyltransferase
Probab=82.87 E-value=25 Score=36.40 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcc
Q 011816 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (477)
Q Consensus 263 defv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAG 340 (477)
.+.+..+ .+| .++ |-+-.+......+ +.+| .++||.| |+...=-.=+||=++.-.+..| ++++.||+++|.+
T Consensus 87 ~Dta~vl-s~y-~D~-iviR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~ 160 (306)
T PLN02527 87 EDTIRTV-EGY-SDI-IVLRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDL 160 (306)
T ss_pred HHHHHHH-HHh-CcE-EEEECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 3443333 345 333 3344444444333 3344 4689999 4333333456677776666666 5999999999987
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-CC---CCCHHHHhcccCCcEEE
Q 011816 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP---VNNLLDAVKVIKPTILI 416 (477)
Q Consensus 341 sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~---~~~L~eav~~vkptvLI 416 (477)
.=+ -+++-++.++.+-.|+ +|.++-.+|+- +++....+++.. .. ..++.+++++ +||+.
T Consensus 161 ~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy 223 (306)
T PLN02527 161 ANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLY 223 (306)
T ss_pred CCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEE
Confidence 422 2455554444332254 68878777761 122222333321 11 2689999998 99999
Q ss_pred eccCCCCCCCH--H-HH----------HHHHcCCCCcEEE-EcCCCCCCCCCCHHHH
Q 011816 417 GSSGVGRTFTK--E-VI----------EAMASFNEKPLIL-ALSNPTSQSECTAEEA 459 (477)
Q Consensus 417 G~S~~~g~Ft~--e-vv----------~~Ma~~~erPIIF-aLSNPt~~~E~tpe~A 459 (477)
-.+.+..-+.+ + .. +.|+...++.||+ || | ..-|++.+-.
T Consensus 224 t~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl--P-Rg~Ei~~~V~ 277 (306)
T PLN02527 224 QTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL--P-RLDEITTDVD 277 (306)
T ss_pred ECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC--C-CcccccHHHh
Confidence 97755322221 1 11 2244434666776 33 3 4457776543
No 197
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.84 E-value=5.8 Score=40.93 Aligned_cols=100 Identities=24% Similarity=0.380 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+=.-+|-.|++.-|+-.|-+++.+++|++|-+. .|.-+|.||.. .|... ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 334667888889999999999999999999764 57777777754 22210 1134444332
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP 448 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP 448 (477)
.++|.+.++. +|++|-..+.++.+++|+|+ +..||+=-. |+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik------~GavVIDvGin~ 232 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA------EKAVIVDVGTSR 232 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEecccc
Confidence 1358888887 99999999999999999997 566775443 44
No 198
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.83 E-value=5.2 Score=41.17 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+=.-+|-.|++.=|+-.|-+|+..++|++|.+. .|.-+|.||.. .|. .+.+|+++
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~------------ 191 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF------------ 191 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 345678888999999999999999999999764 67778877753 242 45555542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
.++|.+.++. +|++|-..+.++.|++++|+ +..+|.=-
T Consensus 192 ------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk------~gavVIDv 229 (282)
T PRK14180 192 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK------EGAVVIDV 229 (282)
T ss_pred ------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC------CCcEEEEe
Confidence 1246666776 99999999999999999997 56666543
No 199
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.69 E-value=1.5 Score=43.53 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=33.6
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|++.+|+++|+|..|..+|+.|+.+ |+ .+|.++|.+=
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~ 45 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDV 45 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE
Confidence 357889999999999999999999764 75 6999999873
No 200
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.69 E-value=5.5 Score=41.26 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++.=|+-.+-+++.++++++|.+. -|.-+|.||... +.. ....+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 3567788889999999999999999999764 577777777531 110 00134444432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
..+|.+.+++ +|++|-..|.++.++.++|+ +..||+=-.
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gaiVIDvG 233 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS------EGATVIDVG 233 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEcc
Confidence 1358888887 99999999999999999997 567776554
No 201
>PRK06932 glycerate dehydrogenase; Provisional
Probab=82.29 E-value=12 Score=38.45 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~ea 406 (477)
..|.++++.|+|-|..|-.+|+++.. -|+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-----fg~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-----LGM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-----CCC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 46889999999999999999998753 265 5666665310 000 0 012367777
Q ss_pred hcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 407 VKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 407 v~~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
++. .|+++=. ....|.|+++.+..|. +..++.=.|.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR 234 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR 234 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC
Confidence 776 7777632 1223578888888885 4556665444
No 202
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.12 E-value=1.4 Score=46.01 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=65.6
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC--------CCchhchhhcc---
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--------SLQHFKKPWAH--- 395 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~--------~l~~~k~~~a~--- 395 (477)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=+ ..+.-. ++-..|..-|.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~v-e~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDTV-DLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEE-cccccccCcccChhHCCChHHHHHHHHH
Confidence 568899999999999999999998764 75 68999998732 221100 01111211111
Q ss_pred -c-cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 396 -E-HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 396 -~-~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
. .+ .. .++.+.++. .|++|-++.. .=+..++..++.....|.|++-+
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~~ 151 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWASI 151 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEE
Confidence 0 01 11 134556665 8888877652 34556777788777899998643
No 203
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.08 E-value=6.2 Score=40.65 Aligned_cols=91 Identities=19% Similarity=0.282 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|.+|++.=++-.+-+++.+++|++|-+. .|.-+|.||.. .|. .+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4567788899999999999999999999764 57777777753 232 45555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
.++|.+.++. +|++|-..+.++.+++++|+ +..||+=-
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik------~gaiVIDv 228 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK------EGAVVIDV 228 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEEe
Confidence 1347778887 99999999999999999997 55666543
No 204
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=81.97 E-value=5.2 Score=42.61 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++.-|+..+.+++.+++||+|-+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC--------------
Confidence 4566778889999999999999999999754 56777777754 232 45566442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
.++|.+.+++ +|++|-..|.++.++.++|+ +..||.=.
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK------~GAvVIDV 302 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK------PGAVVIDV 302 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC------CCCEEEec
Confidence 1358888887 99999999999999999997 55666533
No 205
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.83 E-value=6 Score=40.81 Aligned_cols=91 Identities=24% Similarity=0.351 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++.=|+-.|-+++..++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456778888889999999999999999975 467778888754 242 45555542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
..+|.+.+++ +|++|-..+.++.+++++|+ +..||+=-
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDV 226 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR------PGAVVVDV 226 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEEc
Confidence 1247888887 99999999999999999997 55676543
No 206
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=81.75 E-value=1.9 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
-+|+|+|||.||+..|..|... |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999998763 65 58899987543
No 207
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.38 E-value=1.5 Score=49.83 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.7
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
.+|++.||+++|||.-|..+|+.|+.+ |+ ++|.+||..-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 75 79999998644
No 208
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=81.34 E-value=5.5 Score=42.11 Aligned_cols=117 Identities=18% Similarity=0.288 Sum_probs=79.7
Q ss_pred HHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCC
Q 011816 323 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN 402 (477)
Q Consensus 323 r~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~ 402 (477)
|.+..=+.....|+.|=|-.|-|+|..|... | .++++ |+- |.+..-|. |-+.-+..+
T Consensus 206 raTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~-----g-------~~Viv-------TEi--DPI~ALQA--aMeG~~V~t 262 (434)
T KOG1370|consen 206 RATDVMIAGKVAVVCGYGDVGKGCAQALKGF-----G-------ARVIV-------TEI--DPICALQA--AMEGYEVTT 262 (434)
T ss_pred hhhhheecccEEEEeccCccchhHHHHHhhc-----C-------cEEEE-------ecc--CchHHHHH--HhhccEeee
Confidence 4556667778899999999999999877432 3 24442 221 22333332 112334578
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCC---------------CHH-HHhcccCCc
Q 011816 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSEC---------------TAE-EAYTWSKVQ 466 (477)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~---------------tpe-~A~~~t~G~ 466 (477)
|.||++. .|+++-+.+...+++.+..+.|. +..||--+---. .|+ .|+ |=|.|.+||
T Consensus 263 m~ea~~e--~difVTtTGc~dii~~~H~~~mk---~d~IvCN~Ghfd--~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr 335 (434)
T KOG1370|consen 263 LEEAIRE--VDIFVTTTGCKDIITGEHFDQMK---NDAIVCNIGHFD--TEIDVKWLNTPALTWENVKPQVDRYILPNGK 335 (434)
T ss_pred HHHhhhc--CCEEEEccCCcchhhHHHHHhCc---CCcEEecccccc--ceeehhhccCCcceeeecccccceeeccCCc
Confidence 9999998 99999999999999999999997 566765443222 232 222 568899999
Q ss_pred EEE
Q 011816 467 TII 469 (477)
Q Consensus 467 aif 469 (477)
.|+
T Consensus 336 ~iI 338 (434)
T KOG1370|consen 336 HII 338 (434)
T ss_pred EEE
Confidence 876
No 209
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.62 E-value=19 Score=38.63 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=50.5
Q ss_pred HcCCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHH
Q 011816 296 YGTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 354 (477)
Q Consensus 296 yr~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~ 354 (477)
-+..|+|+|--- ..+|=-+++.+|+..|- .|..|.+.++.|+|.|..|..+|+.+..
T Consensus 95 ~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~-- 172 (409)
T PRK11790 95 AKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAES-- 172 (409)
T ss_pred HhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHH--
Confidence 346899999532 23455678888887663 2456899999999999999999998864
Q ss_pred HhhCCCChhhhcCeEEEEccC
Q 011816 355 SKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 355 ~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+ +++.+|+.
T Consensus 173 ---fGm-------~V~~~d~~ 183 (409)
T PRK11790 173 ---LGM-------RVYFYDIE 183 (409)
T ss_pred ---CCC-------EEEEECCC
Confidence 265 68888864
No 210
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=80.61 E-value=14 Score=39.04 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCe
Q 011816 309 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~--------------------g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~ 368 (477)
-||-.+++-+|.++|-. |..+.++||.|+|+|+.|..||+.|..+ | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57778888888888753 3467889999999999999999999763 2 23
Q ss_pred EEEEccCCcccCCCCC-CCchhchhhccccCCCCCHHHHhcccCCcEEEeccCC----CCCCCHHHHHHHHcCCCCcEEE
Q 011816 369 ICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGV----GRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 369 i~lvD~~GLi~~~r~~-~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~----~g~Ft~evv~~Ma~~~erPIIF 443 (477)
|. +.+|.. .....+..|++ .-++.|...+ .|+++=..-- .++|+++.+..|. +.-+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 333422 12233344444 2467777765 8888744311 2588899999886 566666
Q ss_pred EcCC
Q 011816 444 ALSN 447 (477)
Q Consensus 444 aLSN 447 (477)
-.+.
T Consensus 251 N~aR 254 (336)
T KOG0069|consen 251 NTAR 254 (336)
T ss_pred eccc
Confidence 5554
No 211
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=80.49 E-value=1.9 Score=39.58 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 335 v~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|+|||.||++.|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999988765 365 348899986
No 212
>PRK06153 hypothetical protein; Provisional
Probab=79.93 E-value=2.2 Score=45.80 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=34.0
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 578899999999999999999999874 65 699999987
No 213
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=79.91 E-value=38 Score=34.35 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=24.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
..++++|+|||..|+..+.++...+ |. .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 4789999999988887766665421 31 36887775
No 214
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=79.60 E-value=3.7 Score=42.99 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
||.|+|||+-|+++|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 215
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=79.07 E-value=9.4 Score=40.79 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-
Q 011816 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE- 396 (477)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~- 396 (477)
+..++.-..+.|+..|++|+|.+.-.+++++.|.+. .|+. +..+-+. +.++ +.+.+.-+.+...
T Consensus 277 ~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~-------~v~v~t~---~~~~-~~~~~~~~~l~~~~ 341 (427)
T PRK02842 277 ARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGME-------LVEVGTP---YLNR-RFLAAELALLPDGV 341 (427)
T ss_pred HHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCE-------EEEeCCC---CCCH-HHHHHHHHhccCCC
Confidence 455566666778888999999988899999998763 3763 2222111 0111 1011111111111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccC
Q 011816 397 ----HEPVNNLLDAVKVIKPTILIGSSG 420 (477)
Q Consensus 397 ----~~~~~~L~eav~~vkptvLIG~S~ 420 (477)
..+...+.+.|+..+||.|||-|.
T Consensus 342 ~v~~~~D~~~l~~~i~~~~pDllig~~~ 369 (427)
T PRK02842 342 RIVEGQDVERQLDRIRALRPDLVVCGLG 369 (427)
T ss_pred EEEECCCHHHHHHHHHHcCCCEEEccCc
Confidence 112234688999999999999873
No 216
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.00 E-value=10 Score=38.34 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=55.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHHHhcccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~vk 411 (477)
||.|+|.|..|..+|+.+... |. +++++|++. ++ ... ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999998653 43 577777631 11 111 2111 112357788877643
Q ss_pred -CcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 011816 412 -PTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (477)
Q Consensus 412 -ptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (477)
+|++|= +.+.....+++++.+.. ..+..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566653 23233356666666543 23567888887644
No 217
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=78.95 E-value=1.8 Score=45.74 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=63.3
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC--------CCCchhchhhccc--
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 396 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~--------~~l~~~k~~~a~~-- 396 (477)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+ ..+.- +++-..|..-|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~v-e~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDVV-DESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCEe-cCcccccccccChhcCCChHHHHHHHHH
Confidence 578899999999999999999999875 75 68999997622 22110 0111112222110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 397 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 397 ---~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
.+ .. .++.+.++. .|++|-++.. .=++-++-.++..+..|.|++
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 00 11 234556665 8999876542 224456777777778898875
No 218
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=78.82 E-value=4.2 Score=41.19 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=57.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc-----hhchhhccc-cCCCCCHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHE-HEPVNNLLD 405 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~-----~~k~~~a~~-~~~~~~L~e 405 (477)
.||.|+|+|..|..+|..+..+ | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998763 4 368888874211000000000 000000000 0001233 4
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCC
Q 011816 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQ 451 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~ 451 (477)
+++. +|++|=+.... ..+++++.+... .+..+|..+.|....
T Consensus 70 ~~~~--~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALAT--ADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hccC--CCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 5554 88887443322 357888888754 455678888887643
No 219
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.75 E-value=8.9 Score=39.76 Aligned_cols=92 Identities=17% Similarity=0.312 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|..|++.=++-.|-+++.+++|++|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 3567788888899999999999999999764 67778887754 243 34555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
..+|.+.+++ +|++|-..+.++.|++++|+ +..||+=..
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDvG 230 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK------PGAVVVDVG 230 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEec
Confidence 1357788887 99999999999999999997 566775443
No 220
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=78.66 E-value=7.2 Score=40.56 Aligned_cols=128 Identities=18% Similarity=0.283 Sum_probs=77.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCC-CCCCCchhchhhccccC--CCCCH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHE--PVNNL 403 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~-r~~~l~~~k~~~a~~~~--~~~~L 403 (477)
++.+..||.++|+|..|++||-.|+.- |++ +++.++|-.==-.++ ..| |+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 456678999999999999999998763 663 678899964211111 112 32 3445655321 11233
Q ss_pred HHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcE
Q 011816 404 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQT 467 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~a 467 (477)
.. -+ ..++.|=+.+.... +=+.+|..+.++.++-|++-.|||. ++.---+++.|. -..
T Consensus 84 ~~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV---DilTYv~wKLSgfP~nR 157 (332)
T KOG1495|consen 84 SV-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV---DILTYVTWKLSGFPKNR 157 (332)
T ss_pred cc-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch---HHHHHHHHHHcCCcccc
Confidence 32 22 25666655443322 2246777788999999999999998 554444444331 133
Q ss_pred EEEcC
Q 011816 468 IILQH 472 (477)
Q Consensus 468 ifAsG 472 (477)
+|.||
T Consensus 158 ViGsG 162 (332)
T KOG1495|consen 158 VIGSG 162 (332)
T ss_pred eeccC
Confidence 55555
No 221
>PRK07411 hypothetical protein; Validated
Probab=78.60 E-value=1.9 Score=45.68 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=65.1
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC--------CCchhchhhccc--
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--------SLQHFKKPWAHE-- 396 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~--------~l~~~k~~~a~~-- 396 (477)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+= |..+.-. ++-..|..-|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D~-ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFDV-VDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE-ecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 578899999999999999999999875 65 6999999873 2222100 011112111110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 397 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 397 ---~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
.+ .. .+..+.++. .|++|-+... .=++.+|..++.....|.|++
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDN--FPTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 11 11 134455665 8888877652 236677888887778998865
No 222
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=78.57 E-value=2.1 Score=46.58 Aligned_cols=121 Identities=17% Similarity=0.310 Sum_probs=78.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCC-----CCCH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 403 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L 403 (477)
+..||+|+||||.. ..+++...+.+...++ ...|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999985 4667777776666665 4689999973 44422111122233332 122 2589
Q ss_pred HHHhcccCCcEEEec--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 011816 404 LDAVKVIKPTILIGS--------------------------SGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 404 ~eav~~vkptvLIG~--------------------------S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 449 (477)
.+|+++ +|-+|=. -++||.|. -|+++.|-+.++..-++=-+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999998 7766522 23334332 38899999999999999999999
Q ss_pred CCCCCCHHHHhcccCC
Q 011816 450 SQSECTAEEAYTWSKV 465 (477)
Q Consensus 450 ~~~E~tpe~A~~~t~G 465 (477)
+++|- -+++|+..
T Consensus 150 --~~vTe-Av~r~~~~ 162 (442)
T COG1486 150 --AIVTE-AVRRLYPK 162 (442)
T ss_pred --HHHHH-HHHHhCCC
Confidence 77764 34555554
No 223
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=78.55 E-value=4.6 Score=44.58 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=34.8
Q ss_pred HHHHHHHHH----------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 316 AGVVAALKL----------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 316 Agll~Alr~----------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|++.+++. .+..+++.+++|+|||.||-+|+..|.+ .| + +++++|+.
T Consensus 354 ~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 354 IGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 466666653 1346888999999999888888777764 35 2 78888873
No 224
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=78.42 E-value=13 Score=38.33 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=66.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc---CCCCCHHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~ea 406 (477)
.-.++.|+|+|.-|-.-++.+... . . -++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 357899999999877766555331 1 1 3688888873 222 222222222211 224689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 011816 407 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (477)
Q Consensus 407 v~~vkptvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~A 459 (477)
+++ .||+|-++ +....|..++++ +..-|-++.-.+ .+.|+.++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHHH
Confidence 986 99999665 333478888774 566788887544 3689998743
No 225
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=78.41 E-value=3.1 Score=43.29 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=28.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..-
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCCC
Confidence 457899999999999999998763 42 23688887653
No 226
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=78.34 E-value=11 Score=45.36 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCC---------CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhc------------Ce---EEE
Q 011816 316 AGVVAALKLIGGT---------LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL 371 (477)
Q Consensus 316 Agll~Alr~~g~~---------l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~------------~~---i~l 371 (477)
+.+.+|++..|.. +.-.+|||.|+|-.|.|.++++...-.+ =++.++-+ ++ +|.
T Consensus 179 ~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~ 256 (1042)
T PLN02819 179 AAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYG 256 (1042)
T ss_pred HHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeee
Confidence 4456666655432 3358999999999999999988643111 01222210 11 221
Q ss_pred --EccCCcccCCCCCCCchhchhhccccCCC-CCH-HHHhcccCCcEEEecc----CCCCCCCHH-HHHHHHc
Q 011816 372 --VDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNL-LDAVKVIKPTILIGSS----GVGRTFTKE-VIEAMAS 435 (477)
Q Consensus 372 --vD~~GLi~~~r~~~l~~~k~~~a~~~~~~-~~L-~eav~~vkptvLIG~S----~~~g~Ft~e-vv~~Ma~ 435 (477)
+.+.-.+.+...+.--+.+..|++ ++.. ..+ ++++.. +|+|||.= ..|.++|++ +++.|.+
T Consensus 257 ~~~~~~~~~~~~~~~~~f~~~~y~~~-Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 257 CVVTSQDMVEHKDPSKQFDKADYYAH-PEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred eecChHHHhhccCCccccchhhhccC-chhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 111111111100100111223333 2333 344 468877 99999984 345689999 8888874
No 227
>PRK07340 ornithine cyclodeaminase; Validated
Probab=78.28 E-value=16 Score=37.36 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=65.7
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCC--CCCHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 406 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~--~~~L~ea 406 (477)
....+++|+|+|..|...++.+... .++ ++|+++|+. ..+ ...+...+.....+ ..++.++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3567999999999999888887653 243 578888873 222 22222222211111 3578999
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 011816 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (477)
Q Consensus 407 v~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~A 459 (477)
++. .|++|-++... .+|+. .+ .+.--|-++.-.+ .+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~------~~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AA------RAGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cC------CCCCEEEecCCCCCCcccCCHHHH
Confidence 986 99999876543 46654 33 2555677775422 4689998743
No 228
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.07 E-value=4.7 Score=37.83 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=25.4
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++++.+++|.|| |..|..+++.+++ .|. +++++++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467789999997 5566666766653 253 58888875
No 229
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=77.98 E-value=4.4 Score=32.62 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCccc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~ 379 (477)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 789999999999999998552 4 5889999887766
No 230
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=77.82 E-value=14 Score=37.36 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999988653 43 1368888874
No 231
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.64 E-value=17 Score=36.14 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=26.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
..||.|+|+|..|.+||+.|+.. |.- ...+|+++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r 38 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNR 38 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECC
Confidence 46899999999999999998653 410 1245777665
No 232
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=77.59 E-value=8.7 Score=40.72 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-+|++.=|+-.|-+++.+++||+|-+. .|.-+|.||.. .|. .+.+|.++ .
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 4567788888889999999999999999754 57777777754 242 34555442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
++|.+.++. +|++|-..|.++.|+.++|+ +..||.=-
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk------~GavVIDV 285 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK------PGAVVIDV 285 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEc
Confidence 247788887 99999999999999999997 55666543
No 233
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=77.21 E-value=2.3 Score=43.66 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=33.9
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++|++.+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999875 75 799999987
No 234
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=76.90 E-value=2.9 Score=40.37 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+++|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999998754 253 58888864
No 235
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=76.90 E-value=2.8 Score=38.49 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=53.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHHHhccc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~v 410 (477)
.||-|+|.|..|.+||+.|... |. +++..|+. .+ .. +.+... .....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~---~~----~~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PE---KA----EALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HH---HH----HHHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hh---hh----hhhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 54 67777752 11 11 222221 1224678888887
Q ss_pred CCcEEEeccCCCCCCCHHHHHH---HHcCCCCcEEEEcCCCCCCCCCCHHH
Q 011816 411 KPTILIGSSGVGRTFTKEVIEA---MASFNEKPLILALSNPTSQSECTAEE 458 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~---Ma~~~erPIIFaLSNPt~~~E~tpe~ 458 (477)
.|++|=+-..+ .=.++++.. .+...+..||.=+|+-. ||.+-+-
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~ 104 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSREL 104 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhh
Confidence 67777432211 223444443 23334666777777655 5555443
No 236
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=76.52 E-value=4.5 Score=44.19 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=62.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc---ccCCCCCHHHHhc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVK 408 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~---~~~~~~~L~eav~ 408 (477)
.+|-|+|.|..|.++|..|... |. ++++.|+. .++ .++..+.-.. ......++.|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~ 62 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVN 62 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHh
Confidence 3689999999999999999763 53 57887762 222 1111111000 0112468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 011816 409 VI-KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 449 (477)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 449 (477)
.. +|+++| +.-.++...+++++.+.. ..+..||.=+||=.
T Consensus 63 ~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 63 SLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred cCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 64 588555 344445677888877664 34578888898843
No 237
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=76.39 E-value=3.8 Score=38.68 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=24.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||.|+|||..|.|||-+++.+ |. ++.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 689999999999999999874 54 78888874
No 238
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=76.24 E-value=3.3 Score=42.97 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=42.0
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHH
Q 011816 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 352 (477)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~ 352 (477)
--+||-++.-+++.+....|..|++..+.|+|| |..|.+||+.|.-
T Consensus 143 ns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 143 NSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 347899999999999999999999999999997 8999999999864
No 239
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=76.05 E-value=17 Score=38.00 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceecc-CCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcc
Q 011816 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (477)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAG 340 (477)
+...+..+. +| .++++ +-.++. .+.+.+.+| .++||+|= |-.-=-.=+||=++.-.+..|++|++.||+++|-+
T Consensus 91 l~DTarvls-~y-~D~iv-~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVLG-RM-YDAIE-YRGFKQ-SIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHHH-Hh-CCEEE-EEcCch-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCC
Confidence 344444443 45 44433 334332 233334444 46899993 22222344677777776777778999999999987
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc----CCCCCHHHHhcccCCcEEE
Q 011816 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILI 416 (477)
Q Consensus 341 sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvLI 416 (477)
.- ++++-++.++.+ .|+ +|.++-.+++.-.. + .-+.-+.+++.. ....++.+++++ +||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVy 230 (334)
T PRK01713 166 RN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVH 230 (334)
T ss_pred cc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 53 377776666655 475 68888888773321 1 111122343321 123689999998 99998
Q ss_pred ecc
Q 011816 417 GSS 419 (477)
Q Consensus 417 G~S 419 (477)
-.+
T Consensus 231 t~~ 233 (334)
T PRK01713 231 TDV 233 (334)
T ss_pred Ecc
Confidence 753
No 240
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=76.01 E-value=6.8 Score=34.72 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=49.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
.||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. + +.+.-.......+-..+|.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~-d-~g~~~~~~~~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK-D-VGELAGIGPLGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS-B-CHHHCTSST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc-h-hhhhhCcCCcccccchhHHHhccc-
Confidence 38999999 99999999998762 243 3456778775111111 1 111000000000112567777776
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
+||+|=.|.+. ...+.++...++ ..|+|..
T Consensus 68 -~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 -ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp --SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred -CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 77777777432 333445544443 4555554
No 241
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=75.73 E-value=13 Score=38.21 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=67.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCCCHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~e 405 (477)
.-.++.|+|+|.-|..-++.++.. .. .++|.+.|+. .++ ...+.+.+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~------i~~v~v~~r~----~~~---a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YN------PKRIRVYSRN----FDH---ARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999988887776653 13 3678877763 222 33333333321 122478999
Q ss_pred HhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHHH
Q 011816 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 459 (477)
Q Consensus 406 av~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~A 459 (477)
+++. +||++-++.. ..+|..++++. ..-|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9988 9999976532 34788888862 2345554 33334689998743
No 242
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=74.96 E-value=13 Score=39.79 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=75.5
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcC--eEEEE--ccCCcccCCCCCCCchhchhhccccCCCCCHHH
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLV--DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~--~i~lv--D~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
-.||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+ |.+-=..++-.-+|.+..-++.....-..+-.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH
Confidence 479999999 99999999987652 54110 01 34455 432111111000122222123221100123456
Q ss_pred HhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcccC--CcEE
Q 011816 406 AVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSK--VQTI 468 (477)
Q Consensus 406 av~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~~t~--G~ai 468 (477)
.++. .|++|=+.+.+ |- +=+++.+.|.++. +..||+--|||- .+..--+++++. .+-+
T Consensus 117 ~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv---Dv~t~v~~k~sg~~~~rv 191 (387)
T TIGR01757 117 VFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC---NTNALIAMKNAPNIPRKN 191 (387)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH---HHHHHHHHHHcCCCcccE
Confidence 6777 99998776654 21 1246677777755 899999999998 666666666662 3457
Q ss_pred EEcCC
Q 011816 469 ILQHF 473 (477)
Q Consensus 469 fAsGs 473 (477)
|.||.
T Consensus 192 iG~gT 196 (387)
T TIGR01757 192 FHALT 196 (387)
T ss_pred EEecc
Confidence 77774
No 243
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=74.67 E-value=4 Score=40.60 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=57.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC--------CCCchhchhhcc----c-cC-
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAH----E-HE- 398 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~--------~~l~~~k~~~a~----~-~~- 398 (477)
||+++|+|..|.-+++.|+.+ |+ ++|.++|.+=+ ..+.- +++-..|..-|. . .+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D~V-e~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~ 68 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMDTI-DVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPN 68 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEE-cchhhccccCCChhhCChHHHHHHHHHHHHHCCC
Confidence 689999999999999999774 65 78999998733 22210 111112221111 0 01
Q ss_pred --------CC---CCH-HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 399 --------PV---NNL-LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 399 --------~~---~~L-~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.. .++ .+-+++ .|++|.... ..-+...+-.++.....|+|.+=+
T Consensus 69 v~i~~~~~~i~~~~~~~~~f~~~--~DvVi~a~D--n~~aR~~ln~~c~~~~iplI~~g~ 124 (234)
T cd01484 69 CKVVPYQNKVGPEQDFNDTFFEQ--FHIIVNALD--NIIARRYVNGMLIFLIVPLIESGT 124 (234)
T ss_pred CEEEEEeccCChhhhchHHHHhC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcc
Confidence 01 111 233444 787776543 233566677777767788887644
No 244
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=74.49 E-value=3.5 Score=43.21 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=18.2
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
+|+|+|||.||...|..+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~ 21 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS 21 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh
Confidence 68999999999999988865
No 245
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=74.30 E-value=4 Score=42.40 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=27.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998443 123 589999986443
No 246
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=74.18 E-value=22 Score=37.11 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=58.0
Q ss_pred HhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh-ccccCCCCC
Q 011816 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 402 (477)
Q Consensus 324 ~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~-a~~~~~~~~ 402 (477)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. +...+.+ ++. -+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~y----~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGARY----VD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCcee----cc
Confidence 3456788999999999999999999987 43 55 5665665432 1111111 221 23
Q ss_pred HHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 403 LLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 403 L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
|.|.++. .|+++-..- ..++|+++.++.|. +..+|.=.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNt 235 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNT 235 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEEC
Confidence 7777776 787774421 12578888888885 44454433
No 247
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=74.11 E-value=3.7 Score=42.44 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.9
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
.|+|+|||.||...|..+.+
T Consensus 2 DVvIVGaGpAG~~aA~~La~ 21 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR 21 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 48999999999999988865
No 248
>PRK06270 homoserine dehydrogenase; Provisional
Probab=73.92 E-value=28 Score=36.19 Aligned_cols=104 Identities=17% Similarity=0.250 Sum_probs=64.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc-hhhccccC---------
Q 011816 332 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHE--------- 398 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~---~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-~~~a~~~~--------- 398 (477)
.||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.+. ++..+ ..|+....
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998652 22222331 122446799999888653 32211 22332211
Q ss_pred CCCCHHHHhcccCCcEEEeccCCC---CCCCHHH-HHHHHcCCCCcEEE
Q 011816 399 PVNNLLDAVKVIKPTILIGSSGVG---RTFTKEV-IEAMASFNEKPLIL 443 (477)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~---g~Ft~ev-v~~Ma~~~erPIIF 443 (477)
...++.|+++...+||+|=++... +-...++ .+++. +.++||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 113789999877899999877531 2223455 44454 3678886
No 249
>PRK06823 ornithine cyclodeaminase; Validated
Probab=73.89 E-value=22 Score=36.79 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=67.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc---cCCCCCHHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 406 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~---~~~~~~L~ea 406 (477)
.-.++.++|+|.-+...++.+... + . -++|++.|+. ..+ ...+...+.+. .....+..++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v--~--~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV--T--D------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 357899999999988888876653 1 2 3688888773 222 22222222111 1123689999
Q ss_pred hcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 011816 407 VKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (477)
Q Consensus 407 v~~vkptvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~A 459 (477)
++. +||++-+++ ...+|..++++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 999997643 23478888886 455677776432 3689998754
No 250
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.85 E-value=26 Score=37.50 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=59.3
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc---CCCCCHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 405 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e 405 (477)
+...||+|+|.|-.|+++|++|.. .|. .+.++|.+- . .........+.... .......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~----~--~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKS----E--EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCC----C--ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999999875 363 577888642 0 01111001111100 00111234
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCC
Q 011816 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHF 473 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsGs 473 (477)
-++. +|.+|=.++.+ .-.+++.++.. ..-||+ | |+ |-++++.+.+.|--|||
T Consensus 74 ~~~~--~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~---s------~~--e~~~~~~~~~vIaITGT 125 (458)
T PRK01710 74 KLDG--FDVIFKTPSMR-IDSPELVKAKE--EGAYIT---S------EM--EEFIKYCPAKVFGVTGS 125 (458)
T ss_pred Hhcc--CCEEEECCCCC-CCchHHHHHHH--cCCcEE---e------ch--HHhhhhcCCCEEEEECC
Confidence 3443 78766444433 23455555544 346775 2 22 23444444577888997
No 251
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.35 E-value=7.8 Score=38.82 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCC-CChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G-~~~eeA~~~i~lvD~~ 375 (477)
+||.|+|+|..|.++|..+... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999998653 4 21 2467777763
No 252
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=73.12 E-value=4.5 Score=42.18 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||+++|||.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 65 799999986
No 253
>PRK06184 hypothetical protein; Provisional
Probab=72.57 E-value=4.5 Score=43.45 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++..|+|+|||.||+..|-+|.+ .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 46789999999999999988865 365 46667764
No 254
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=72.40 E-value=2.3 Score=43.95 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (477)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999774
No 255
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.34 E-value=4.7 Score=41.56 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||+++|||.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 76 699999987
No 256
>PRK06847 hypothetical protein; Provisional
Probab=72.32 E-value=4.8 Score=40.75 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (477)
..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999998865
No 257
>PRK07236 hypothetical protein; Provisional
Probab=71.91 E-value=5.4 Score=41.04 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.4
Q ss_pred CccceEEEeCcchHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
.+..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456899999999999999999876
No 258
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=71.85 E-value=10 Score=41.46 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=60.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc--cCCCCCHHHHhccc-
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI- 410 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~--~~~~~~L~eav~~v- 410 (477)
|-|+|.|..|.++|..|+.. |. ++++.|+. ..+ .....+.+... .....++.|+++..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l~ 62 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSLE 62 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhcC
Confidence 77999999999999999763 53 57777763 111 22222221100 11235678877654
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 447 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 447 (477)
+|+++| ++-+++...+++++.+..+ .+..||.=+||
T Consensus 63 ~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 63 RPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444556778888887654 56779998988
No 259
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=71.76 E-value=19 Score=37.98 Aligned_cols=99 Identities=12% Similarity=0.230 Sum_probs=55.0
Q ss_pred cceEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-c----cCCCCCHH
Q 011816 331 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E----HEPVNNLL 404 (477)
Q Consensus 331 d~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~----~~~~~~L~ 404 (477)
..+|.|+| +|..|-.+|..+..+ |. .++++|++-. +... ...+. + .-+.....
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~~~------~~~~---~~~~~aDlVilavP~~~~~ 156 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQDDW------DRAE---DILADAGMVIVSVPIHLTE 156 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCCcc------hhHH---HHHhcCCEEEEeCcHHHHH
Confidence 37899999 999999999998763 53 5788887421 1111 11111 0 01111222
Q ss_pred HHhcc---cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCC
Q 011816 405 DAVKV---IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECT 455 (477)
Q Consensus 405 eav~~---vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~t 455 (477)
++++. .+|+.+|-=. |..+..+++.|++....+ |-=+-|-.-+|..
T Consensus 157 ~~~~~l~~l~~~~iv~Dv---~SvK~~~~~~~~~~~~~~--fvg~HPm~G~~~~ 205 (374)
T PRK11199 157 EVIARLPPLPEDCILVDL---TSVKNAPLQAMLAAHSGP--VLGLHPMFGPDVG 205 (374)
T ss_pred HHHHHHhCCCCCcEEEEC---CCccHHHHHHHHHhCCCC--EEeeCCCCCCCCc
Confidence 33322 5666554322 246678899998665555 4435555555543
No 260
>PLN02688 pyrroline-5-carboxylate reductase
Probab=71.43 E-value=19 Score=35.16 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEE-cc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DS 374 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv-D~ 374 (477)
||.|+|.|..|.++|+-|++. |.- -..+|+++ |+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r 36 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDS 36 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCC
Confidence 689999999999999998753 420 02367777 54
No 261
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=71.38 E-value=7.9 Score=40.77 Aligned_cols=94 Identities=18% Similarity=0.311 Sum_probs=54.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc--ccCCCCCCCchhchhhccc---cCC---CCCH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---HEP---VNNL 403 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL--i~~~r~~~l~~~k~~~a~~---~~~---~~~L 403 (477)
.||.|+|||+=|+++|..+.+. | -.=++|..|.+=. |..+|. ..+|... +++ ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g-----~~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----G-----HEVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----C-----CeeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999763 4 1236777664311 112221 1122221 122 2578
Q ss_pred HHHhcccCCcE-EEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcC
Q 011816 404 LDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMAS-FNEKPLILALS 446 (477)
Q Consensus 404 ~eav~~vkptv-LIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLS 446 (477)
.++++. .|+ ++++++ .+-+++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs---~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPS---QALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECCh---HHHHHHHHHHhhhccCCCeEEEEe
Confidence 888886 554 455555 466778887752 23444554444
No 262
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=71.37 E-value=15 Score=36.34 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=57.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC--CCchhchhhcc-c----cCCCCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHFKKPWAH-E----HEPVNN 402 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~--~l~~~k~~~a~-~----~~~~~~ 402 (477)
++.||.|+|+|..|.+++..|... |.- ..++++.+|++- .+.. ..++.+..... + .-+...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~D~Vilavkp~~ 69 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPSK----KNTPFVYLQSNEELAKTCDIIVLAVKPDL 69 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCCh----hcCCeEEeCChHHHHHhCCEEEEEeCHHH
Confidence 457899999999999999998753 321 134688888642 1100 00111100101 0 001123
Q ss_pred HHHHhcccC----CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 403 LLDAVKVIK----PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 403 L~eav~~vk----ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+.++++.++ ++.+ +|-..| ++.+.++.+-. ..++++-.+.|..
T Consensus 70 ~~~vl~~i~~~l~~~~i--IS~~aG-i~~~~l~~~~~-~~~~vvr~mPn~p 116 (260)
T PTZ00431 70 AGKVLLEIKPYLGSKLL--ISICGG-LNLKTLEEMVG-VEAKIVRVMPNTP 116 (260)
T ss_pred HHHHHHHHHhhccCCEE--EEEeCC-ccHHHHHHHcC-CCCeEEEECCCch
Confidence 444444443 3433 565554 77888888742 3456888888865
No 263
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=71.33 E-value=11 Score=38.26 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=59.3
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch-h----chhhcc-ccCCCC
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-F----KKPWAH-EHEPVN 401 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~-~----k~~~a~-~~~~~~ 401 (477)
++..+|+|.|| |-.|..+++.|++. | .+++.+|++-- .. ....+ . +..+.. +..+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPP---TS-PNLFELLNLAKKIEDHFGDIRDAA 65 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCc---cc-hhHHHHHhhcCCceEEEccCCCHH
Confidence 34678999996 88888888888752 5 36777776521 10 00100 0 001111 112224
Q ss_pred CHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCC-CCcEEEEcC
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 446 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 446 (477)
++.++++..+||++|=+.+.... .+..++++|...+ .+.+||.=|
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 57788888889999987764311 1345566666544 457888644
No 264
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=71.28 E-value=16 Score=37.85 Aligned_cols=123 Identities=17% Similarity=0.258 Sum_probs=83.7
Q ss_pred eeeeeecCCcccHHHHHHHHc--CCCceecc--------CCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHH
Q 011816 277 VLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTG 345 (477)
Q Consensus 277 ~lIq~EDf~~~~af~iL~ryr--~~~~~FnD--------DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~G 345 (477)
.+|||==...-+.-.+++.-- +++==||- ...+--.+|-+|++.-++-.+.+|.+.++|++|.+. -|--
T Consensus 92 IlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkP 171 (283)
T COG0190 92 ILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKP 171 (283)
T ss_pred EEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHH
Confidence 566665454455555555442 22211221 133455778899999999999999999999999876 4666
Q ss_pred HHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCC
Q 011816 346 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTF 425 (477)
Q Consensus 346 ia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~F 425 (477)
+|.+|+.+ +. .+-+|+|+ .++|.+.++. +|++|-.-+.++.|
T Consensus 172 la~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~~i 213 (283)
T COG0190 172 LALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPHFI 213 (283)
T ss_pred HHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcccc
Confidence 77777652 32 34455442 1357777887 99999999999999
Q ss_pred CHHHHHHHHcCCCCcEEE
Q 011816 426 TKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 426 t~evv~~Ma~~~erPIIF 443 (477)
+.++|+ +..+|+
T Consensus 214 ~~d~vk------~gavVI 225 (283)
T COG0190 214 KADMVK------PGAVVI 225 (283)
T ss_pred cccccc------CCCEEE
Confidence 999987 455654
No 265
>PRK08163 salicylate hydroxylase; Provisional
Probab=71.11 E-value=5.1 Score=40.99 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.5
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (477)
..+|+|+|||.||+..|-.|.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988865
No 266
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=70.65 E-value=14 Score=40.75 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=26.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-+||.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 46899999999999999998764 64 57777754
No 267
>PRK07877 hypothetical protein; Provisional
Probab=70.60 E-value=11 Score=43.47 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=67.3
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC------CCCchhchhhccc----
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK------DSLQHFKKPWAHE---- 396 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~------~~l~~~k~~~a~~---- 396 (477)
.+|++.||+|+|+| .|..+|..|+.+ |+ ..+|.++|-+=+=.++-. .++-..|..-|..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~ 171 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE 171 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH
Confidence 57889999999999 899999888764 53 268999998743221100 0111122211211
Q ss_pred -cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 397 -HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 397 -~~~---------~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.+. + .++.+.+++ .|++|-.+- +.=++-+|...|.....|+|++.+
T Consensus 172 inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 172 LDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 111 1 256666765 898887765 234667788888888999999885
No 268
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=70.59 E-value=40 Score=37.53 Aligned_cols=186 Identities=20% Similarity=0.241 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeeeeecCCc--ccHHHHHHHHcC---CC--c-----ee----ccCCCchHHHHHHHHHH
Q 011816 257 EYAELLDEFMSAVKQNYGEKVLIQFEDFAN--HNAFELLAKYGT---TH--L-----VF----NDDIQGTASVVLAGVVA 320 (477)
Q Consensus 257 ~y~~~idefv~av~~~fGp~~lIq~EDf~~--~~af~iL~ryr~---~~--~-----~F----nDDiQGTaaV~LAgll~ 320 (477)
|-..+.-.||..+.+--||..=+==+|++. ..---++..|+. .. | +- |+-.--|+-=|..++=+
T Consensus 159 Ei~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~ 238 (514)
T KOG2250|consen 159 EIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVEA 238 (514)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHHH
Confidence 344555677777777778866666677762 122236777763 11 1 11 44444555555555444
Q ss_pred HHHHhC--CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc-hhhcccc
Q 011816 321 ALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEH 397 (477)
Q Consensus 321 Alr~~g--~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-~~~a~~~ 397 (477)
=++-.+ +.+++.||++-|-|--|...|..|.+. | -+-|-+.|++|.|.... .++..+ ..++...
T Consensus 239 ~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G------~kvvavsD~~G~l~np~--Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 239 ILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----G------AKVVAVSDSKGVLINPD--GIDIEELLDLADEK 305 (514)
T ss_pred HHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----C------CEEEEEEcCceeEECCC--CCCHHHHHHHHHhh
Confidence 444455 789999999999999999999888764 4 25678899999998864 344433 2333322
Q ss_pred CCCCCHHHHh--------------cccCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 398 EPVNNLLDAV--------------KVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 398 ~~~~~L~eav--------------~~vkptvLIG~S~~~g~Ft~evv~~M-a~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
..++++.++. ---+.|+++=+.++ +.+|.+=.+.. ++.+ |+|.==|| ||+ || ++++++
T Consensus 306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe--A~~vle 379 (514)
T KOG2250|consen 306 KTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE--ADEVLE 379 (514)
T ss_pred ccccccccccccCccccccCcchhhHhhCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--HHHHHH
Confidence 2222221111 11258999999998 68887766665 5544 89999999 663 44 346665
No 269
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=70.35 E-value=5.6 Score=41.15 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|+|+|||.+|+.+|-.|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999998763 5 3789999864
No 270
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=70.30 E-value=22 Score=37.43 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh
Q 011816 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (477)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~ 393 (477)
+.|+.++|=.+..+. -.++.|+|+|.-+-..++.+... .++ ++|++.|+. .+....+...+
T Consensus 115 aAasavAa~~LA~~d--a~~laiIGaG~qA~~ql~a~~~v----~~~------~~I~i~~r~-------~~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKD--ASTLAIIGAGAQARTQLEALKAV----RDI------REIRVYSRD-------PEAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCC--CcEEEEECCcHHHHHHHHHHHhh----CCc------cEEEEEcCC-------HHHHHHHHHHH
Confidence 445566666665553 24678999998755554444332 343 577777663 11112222222
Q ss_pred ccc----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 011816 394 AHE----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (477)
Q Consensus 394 a~~----~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~ 461 (477)
.+. .....++++||++ +|+++.++.. .-.|+.++|+. .--|.-.=||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHh
Confidence 222 2345799999998 9999998632 34889999872 223444446777789999986544
No 271
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=70.26 E-value=5.3 Score=39.79 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..++|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5689999999999999988754 354 688888764
No 272
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=70.01 E-value=6.2 Score=42.70 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.3
Q ss_pred CCccceEEEeCcchHHHHHHHHHHH
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
+....+|+|+|||+||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456789999999999999998865
No 273
>PRK09126 hypothetical protein; Provisional
Probab=69.99 E-value=5.4 Score=40.74 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=25.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..|+|+|||.||+..|..|.+. |+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-----G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-----GL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 46799999999999999998753 65 45666654
No 274
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=69.80 E-value=5 Score=41.32 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.7
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (477)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999999865
No 275
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.72 E-value=6.3 Score=40.99 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=28.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+=
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCCC
Confidence 689999999999999999865 65 7999999863
No 276
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=69.42 E-value=5.9 Score=41.32 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=30.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 380 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~ 380 (477)
+--|+|+|||.||...|..+.+. |+ ++.++|++..+-.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G~ 40 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPGA 40 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCCC
Confidence 34689999999999999998764 64 6788888766544
No 277
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=69.33 E-value=21 Score=36.38 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=63.0
Q ss_pred hCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh----------chhh
Q 011816 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 393 (477)
Q Consensus 325 ~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~----------k~~~ 393 (477)
++..++..||+|.|| |-.|..+++.|+.. | -+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 345577789999997 99999999888752 4 257777753 11110111110 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 394 a~-~~~~~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
-. +..+...|.+++++ ||++|=+.+.... .|..+++.+.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11122356777775 9999988875432 2457888887765568998654
No 278
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=69.31 E-value=18 Score=37.50 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.8
Q ss_pred CccceEEEeCcchHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
|++.||.|+|+|..|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 568899999999999999999876
No 279
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=69.22 E-value=3.4 Score=42.00 Aligned_cols=37 Identities=11% Similarity=0.269 Sum_probs=27.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
+|||+|+|.||+..|+.+.... . ...+|.++|++.-.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCCC
Confidence 5899999999999998875421 0 13589999987543
No 280
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=69.15 E-value=6.4 Score=41.24 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=27.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
.||||+|+|.||+..|..|.+. |- .-+|.++|++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999988653 21 137889998754
No 281
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=69.11 E-value=23 Score=40.35 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHHHHH-hcCCCeeeeeecCCcc----cHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCc
Q 011816 256 QEYAELLDEFMSAVKQ-NYGEKVLIQFEDFANH----NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLA 330 (477)
Q Consensus 256 ~~y~~~idefv~av~~-~fGp~~lIq~EDf~~~----~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~ 330 (477)
+.|.+.|.|.++++.+ .| .||.+.. =--.+++||..+|=-|+-... .++.|.. ..+
T Consensus 68 ~~y~~~V~Eli~~L~~nGF-------VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR 128 (637)
T TIGR03693 68 APYQKRVFEIGEILYKNGF-------VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFE--LSR 128 (637)
T ss_pred HHHHHHHHHHHHHHHhCCc-------eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhh--hhh
Confidence 3455545555555544 33 4665422 123478999877655543321 1222222 228
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-c----------CC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H----------EP 399 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~----------~~ 399 (477)
+.||+++|.|.-|..+.-.|+. .|+ .+|..+|.+=.. ++.. .+.+. .+-|++ . ..
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v~-SNln-RIgEl-~e~A~~~n~~v~v~~i~~~~ 194 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAEE-HALD-RIHEL-AEIAEETDDALLVQEIDFAE 194 (637)
T ss_pred cccEEEEecCchHHHHHHHHHh-----cCC------CcEEEEeccccc-hhhh-HHHHH-HHHHHHhCCCCceEeccCCc
Confidence 9999999999988888777765 476 688888665442 2211 01122 333332 1 12
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 011816 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 442 (477)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (477)
..++.++++. .|++|=+|..+-.-.-.++-+-+.-..+|.|
T Consensus 195 ~~dl~ev~~~--~DiVi~vsDdy~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 195 DQHLHEAFEP--ADWVLYVSDNGDIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred chhHHHhhcC--CcEEEEECCCCChHHHHHHHHHHHHcCCCeE
Confidence 3579999988 7999988886632223333333333344443
No 282
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=68.91 E-value=14 Score=37.38 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.0
Q ss_pred CccceEEEeCcchHHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
....||.|+|+|+-|..+|-.|.++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC
Confidence 3456899999999999999888663
No 283
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=68.75 E-value=6.8 Score=39.87 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=26.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..+|+|+|||.||+..|-+|.+.- +.|+ ++.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 3457999999999999999886520 0154 57777774
No 284
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=68.75 E-value=19 Score=37.82 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCccceEEEeCcchHHHHHHHHHHH
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 3678899999999999999999865
No 285
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=68.69 E-value=14 Score=36.33 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=24.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
||.|+|+|..|.++++-|... |.. .+.+++.|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECC
Confidence 689999999999999998653 532 245666665
No 286
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=68.68 E-value=7.5 Score=37.99 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999999876 35 38999999833
No 287
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=68.52 E-value=5.8 Score=40.55 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=23.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
|+|+|||.||+.+|..+.+ .|+ ++.++|++
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~ 31 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPH 31 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccC
Confidence 7999999999999977653 253 57777765
No 288
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=68.51 E-value=5.2 Score=36.47 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 335 v~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+|+|+|.+|+++++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998763 1113468999999755
No 289
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=68.35 E-value=7.1 Score=37.68 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=62.6
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccC---CCCCHH
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---PVNNLL 404 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~---~~~~L~ 404 (477)
+|++.++||+|+|..|.-.++.|+.+ | .+|++++.+ ..+.-..++.... ....+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~~----------~~~~l~~l~~~~~i~~~~~~~~ 64 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISPE----------LTENLVKLVEEGKIRWKQKEFE 64 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcCC----------CCHHHHHHHhCCCEEEEecCCC
Confidence 57899999999999999999888763 4 378888642 1111111111100 001121
Q ss_pred -HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEE
Q 011816 405 -DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIIL 470 (477)
Q Consensus 405 -eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifA 470 (477)
+-+. ++|++|.++..+ ..++.+. ..|+ ++-++=.-.+|. +|++---.....|...+|
T Consensus 65 ~~~l~--~adlViaaT~d~-elN~~i~-~~a~--~~~lvn~~d~~~---~~~f~~Pa~~~~g~l~ia 122 (202)
T PRK06718 65 PSDIV--DAFLVIAATNDP-RVNEQVK-EDLP--ENALFNVITDAE---SGNVVFPSALHRGKLTIS 122 (202)
T ss_pred hhhcC--CceEEEEcCCCH-HHHHHHH-HHHH--hCCcEEECCCCc---cCeEEEeeEEEcCCeEEE
Confidence 2233 389999887755 5555553 3343 222333344454 666543334456777776
No 290
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=68.23 E-value=7.7 Score=36.05 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=28.6
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
+|++.++||+|+|..|.-.++.|+++ | .++.+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcC
Confidence 57899999999999999999988763 4 36777754
No 291
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=68.22 E-value=9.9 Score=41.78 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.9
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-...+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 457899999999999999988754 353 58889864
No 292
>PRK06475 salicylate hydroxylase; Provisional
Probab=67.99 E-value=5.8 Score=41.12 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=19.0
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999988755
No 293
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=67.64 E-value=26 Score=34.00 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=55.6
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhh-hcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHh
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~ee-A~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav 407 (477)
...+||.|+|.|..+. +|..+...|.. ++..+- +..-+.+.|..-+++.-- . -..+-..|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a-n-d~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA-N-DRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh-c-cccHHHHHHHH------HHHcC
Confidence 4568999999998766 77776665532 110000 111222323222222211 1 12233445442 22222
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHH--HcCCCCcEEEEcCCC
Q 011816 408 KVIKPTILIGSSGVGRTFTKEVIEAM--ASFNEKPLILALSNP 448 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~M--a~~~erPIIFaLSNP 448 (477)
+ +-|++|+.|..|. |+++++.+ |+...-|+|- ++++
T Consensus 108 ~--~gDvli~iS~SG~--s~~v~~a~~~Ak~~G~~vI~-IT~~ 145 (196)
T PRK10886 108 H--AGDVLLAISTRGN--SRDIVKAVEAAVTRDMTIVA-LTGY 145 (196)
T ss_pred C--CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEE-EeCC
Confidence 2 4799999999774 78888876 4555566665 5543
No 294
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=67.43 E-value=23 Score=34.33 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=41.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
||+|.|| |-.|-.+++.+.+. | .+++.+++. ..| + ....++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d-~-----------~~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLD-L-----------TDPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccC-C-----------CCHHHHHHHHHhCC
Confidence 6889996 99999998888652 4 367777763 111 2 11245778888889
Q ss_pred CcEEEeccCCC
Q 011816 412 PTILIGSSGVG 422 (477)
Q Consensus 412 ptvLIG~S~~~ 422 (477)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887643
No 295
>PRK06046 alanine dehydrogenase; Validated
Probab=66.95 E-value=33 Score=35.33 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=65.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCCCHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~e 405 (477)
.-.++.|+|+|..|...++.+... .+ -++++++|+. ..+ .....+.+.+. .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~------i~~v~v~~r~----~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD------LEEVRVYDRT----KSS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC------ceEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988877766542 23 3788888884 121 22233333211 111357888
Q ss_pred HhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHHH
Q 011816 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 459 (477)
Q Consensus 406 av~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~A 459 (477)
+++ .|+++-++.. ..+|..++++ +.-.|-++ |+...+-|+.++-.
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHHH
Confidence 885 8998877532 3478888875 33356666 45445789998743
No 296
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=66.89 E-value=4.9 Score=44.89 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=32.1
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
++..|.+++|||+-|++||+-|+.. |+ ++|-+||.--+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCee
Confidence 4568999999999999999999887 54 79999997433
No 297
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=66.87 E-value=1.4e+02 Score=29.69 Aligned_cols=44 Identities=18% Similarity=0.053 Sum_probs=31.0
Q ss_pred CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcC
Q 011816 425 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 425 Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsG 472 (477)
.+++.++..++..+.|+++-++.... +.++++.-++ |-.++.-|
T Consensus 183 ~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~~ 226 (243)
T cd00377 183 KDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSYG 226 (243)
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEEC
Confidence 37888888888888999886554432 6888888876 54444433
No 298
>PRK07233 hypothetical protein; Provisional
Probab=66.61 E-value=6.2 Score=40.43 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 5 367777776
No 299
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=66.58 E-value=7.2 Score=37.37 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 47999999999999988754 354 566777663
No 300
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=66.55 E-value=5.9 Score=42.00 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998652 11 2368888876
No 301
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=66.53 E-value=8.4 Score=37.34 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|++.|+||+|+|..|..-++.|+.+ | .+|.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47788999999999999999998864 4 368888763
No 302
>PRK07045 putative monooxygenase; Reviewed
Probab=66.38 E-value=7.3 Score=39.97 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (477)
.+|+|+|||.||+..|-.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 4799999999999999888653
No 303
>PRK08618 ornithine cyclodeaminase; Validated
Probab=66.34 E-value=14 Score=38.07 Aligned_cols=102 Identities=15% Similarity=0.202 Sum_probs=60.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCCCHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~e 405 (477)
...++.|+|+|..|-.++..+... .++ ++|.++|+. ..| .....+.+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 456899999999998877666542 243 688888874 222 22222222211 112467899
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHH
Q 011816 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAE 457 (477)
Q Consensus 406 av~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~E~tpe 457 (477)
+++. .|++|-++..+ ..|+ ++++ +..-|.++- +--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9986 99999765433 2344 4442 444566663 32246788874
No 304
>PRK06753 hypothetical protein; Provisional
Probab=65.93 E-value=7.3 Score=39.49 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.2
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999988865
No 305
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.42 E-value=7.9 Score=43.45 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 56899999999999999998875 253 57888874
No 306
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=65.32 E-value=14 Score=31.77 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=51.1
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEe
Q 011816 338 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 417 (477)
Q Consensus 338 GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG 417 (477)
|.|..|.+++++|...-.. .+ -+=..++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999763111 01 2346677777443332 1111122233468999999778999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 418 SSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 418 ~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
+++. ...++-+.+.+. +..+||-
T Consensus 66 ~t~~-~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTSS-EAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SSC-HHHHHHHHHHHH--TTCEEEE
T ss_pred CCCc-hHHHHHHHHHHH--CCCeEEE
Confidence 9554 356665666665 3456664
No 307
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=65.31 E-value=7.3 Score=41.97 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=20.7
Q ss_pred CCCcc--ceEEEeCcchHHHHHHHHHHH
Q 011816 327 GTLAE--HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 327 ~~l~d--~riv~~GAGsAg~Gia~ll~~ 352 (477)
+++++ -.|+|+|||.||...|..+..
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHh
Confidence 34444 478999999999999988765
No 308
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=65.28 E-value=19 Score=38.84 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=83.7
Q ss_pred ccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC
Q 011816 304 NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (477)
Q Consensus 304 nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~ 383 (477)
.|.-.||+--++-|++.| |..=+....+|+.|=|--|-|||..+.. .|. ++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg-----~GA-------~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MGA-------RVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhc-----CCC-------eEEEEec---------
Confidence 477889999999998764 5567888899999999999999988753 242 4443322
Q ss_pred CCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 011816 384 DSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 458 (477)
Q Consensus 384 ~~l~~~k~~~a~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~ 458 (477)
+|.+.-=|. +.=...++.||++. .|++|=++|..++++.|.++.|. +..|+ +|-- -.-|+..+.
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk---DgaIl---~N~GHFd~EI~~~~ 306 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK---DGAIL---ANAGHFDVEIDVAG 306 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc---CCeEE---ecccccceeccHHH
Confidence 222211121 22224579999998 99999999999999999999996 34443 3322 235666554
No 309
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=65.27 E-value=7.2 Score=39.70 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999988764 354 57777765
No 310
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=65.10 E-value=9.4 Score=38.40 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=25.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 346789999999999999988764 54 68888876433
No 311
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=64.89 E-value=9.2 Score=40.85 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+....+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 4456899999999999999998865 253 68888874
No 312
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=64.75 E-value=9 Score=38.33 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998753 53 68888864
No 313
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=64.70 E-value=26 Score=35.32 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.||.|+|+|..|-++|.-|++. |.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-----g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-----NIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCC---CCceEEEECC
Confidence 3799999999999999988652 531 2346888885
No 314
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=64.66 E-value=7.8 Score=38.65 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=28.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
.+-.++|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999988754 25 368888887543
No 315
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=64.30 E-value=5.8 Score=40.42 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+-|+|||-.|-|||+..+.+ |+ ++|++|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4578999999999999988764 65 79999984
No 316
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=64.23 E-value=3.2 Score=43.04 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=51.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC----chhchhhcc-ccCCCCCHHHHhc
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL----QHFKKPWAH-EHEPVNNLLDAVK 408 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l----~~~k~~~a~-~~~~~~~L~eav~ 408 (477)
|+|+|+|..|-.+++.|.+. .. ..++.+.|++ ..+.+.+ ...+-.+.+ +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~------~~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GP------FEEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TC------E-EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC----CC------CCcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 78999999999999988753 11 1278888874 1110001 001111111 1222245888998
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
+ .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8 79999988854 788888876542 345554
No 317
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=64.07 E-value=22 Score=37.58 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||.|+|+|..|..+|..+... |. +++++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G~-------~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----GH-------EVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----CC-------eEEEEECC
Confidence 799999999999999998753 52 57888864
No 318
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=64.02 E-value=25 Score=33.17 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=25.1
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g~-------~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EGA-------KVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 46678999996 7777777777754 253 67887764
No 319
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=63.99 E-value=9.6 Score=40.91 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=27.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 45799999999999999988865 253 68888875
No 320
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=63.77 E-value=7.9 Score=41.03 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.|+|+|||.||...|-.+.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 479999999999999988865 365 46666654
No 321
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=63.71 E-value=10 Score=30.31 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.3
Q ss_pred EeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 336 ~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
|+|||.+|+..|..|.+. | .+|.+++++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 689999999999998753 4 48999998643
No 322
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=63.26 E-value=22 Score=39.23 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=63.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-C---CCCCHHHHhc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVK 408 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~---~~~~L~eav~ 408 (477)
+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ .++....++... . ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 689999999999999999763 64 57777762 222 222222222211 1 3468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 011816 409 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (477)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (477)
.+ +|+++| ++-..+.-.++|+..+... .+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 64 588888 4544556667776554433 4677999999865
No 323
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=63.23 E-value=9.4 Score=39.35 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=25.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 3579999999999999987754 365 46666643
No 324
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=63.04 E-value=40 Score=41.38 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCeeeeeecCCcc-------cHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEE
Q 011816 264 EFMSAVKQNYGEKVLIQFEDFANH-------NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF 336 (477)
Q Consensus 264 efv~av~~~fGp~~lIq~EDf~~~-------~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~ 336 (477)
+.+++.-+.+.++.+|| |++.. +-+++..+|.-.+++.|=|-+|.+-- .+
T Consensus 442 ~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e----- 498 (1229)
T PRK09490 442 EVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RE----- 498 (1229)
T ss_pred HHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HH-----
Confidence 34444445566677776 55442 36778888888888888777776533 11
Q ss_pred eCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc-----C
Q 011816 337 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-----K 411 (477)
Q Consensus 337 ~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v-----k 411 (477)
-=+.||+.+...+.++.|++. ++|+ +|.-=+ +-+ .+ . +....++.. ..|+|+.+ .
T Consensus 499 -----~r~~ia~r~~~~~~~~~Gi~~----~dIi-~Dplv~-~v~-t~-~-ee~~~~~~~------~leair~ik~~~P~ 558 (1229)
T PRK09490 499 -----RKIEICKRAYDILTEEVGFPP----EDII-FDPNIF-AVA-TG-I-EEHNNYAVD------FIEATRWIKQNLPH 558 (1229)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCH----HHEE-EcCCcc-eee-cC-h-HHHHHHHHH------HHHHHHHHHHHCCC
Confidence 224688888887765579974 4554 776322 211 11 1 222233332 34455522 3
Q ss_pred CcEEEeccCCCCCC
Q 011816 412 PTILIGSSGVGRTF 425 (477)
Q Consensus 412 ptvLIG~S~~~g~F 425 (477)
..+.+|+|...=-|
T Consensus 559 ~~~~~GlSNiSFgl 572 (1229)
T PRK09490 559 AKISGGVSNVSFSF 572 (1229)
T ss_pred CcEEEeeccccccC
Confidence 56899999875334
No 325
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=62.98 E-value=24 Score=35.12 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||.|+|+|..|.++|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 53 57777764
No 326
>PLN02268 probable polyamine oxidase
Probab=62.75 E-value=3.8 Score=42.80 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999976
No 327
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=62.75 E-value=8.2 Score=39.64 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999988754 364 578888753
No 328
>PRK08013 oxidoreductase; Provisional
Probab=62.64 E-value=9.3 Score=39.68 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=25.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+-.|+|+|||.||+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 4579999999999999977754 365 56677764
No 329
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=62.58 E-value=8.4 Score=38.82 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=24.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
|+|+|||.||+..|..|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999987765 364 566777763
No 330
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=62.51 E-value=7.8 Score=39.34 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.0
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 011816 334 FLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~ 353 (477)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999998763
No 331
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=62.44 E-value=1.1e+02 Score=31.35 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=23.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.+++++|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~-----~G~------~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVA-----AGA------SQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----cCC------CcEEEEcC
Confidence 46899999999877765544432 363 46777765
No 332
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.42 E-value=11 Score=39.76 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=28.3
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+++.+++|+|+|.+|.++|+.|+.. |. +++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G~-------~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----GA-------KVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 36788999999999999999998763 52 56666664
No 333
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=62.42 E-value=13 Score=36.35 Aligned_cols=95 Identities=20% Similarity=0.353 Sum_probs=56.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch-hhc-c----ccCCCCCHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWA-H----EHEPVNNLLD 405 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-~~a-~----~~~~~~~L~e 405 (477)
.+|+|+|+|..|..+|+.|... | .++.++|.+--. ...+.. .+. + +......|.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~-------~~~~~~~~~~~~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEER-------VEEFLADELDTHVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHH-------HHHHhhhhcceEEEEecCCCHHHHHh
Confidence 3799999999999999999763 4 478888875221 111111 111 1 1222345777
Q ss_pred H-hcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEE-cCCCC
Q 011816 406 A-VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILA-LSNPT 449 (477)
Q Consensus 406 a-v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFa-LSNPt 449 (477)
| +.. +|++|-+++.. -.--++-.|+.. ..-|-|.+ ..||.
T Consensus 62 agi~~--aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 62 AGIDD--ADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred cCCCc--CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 7 665 99999988864 334455555532 23444444 55554
No 334
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=62.31 E-value=14 Score=37.79 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=35.2
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 380 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~ 380 (477)
+|++++|+++|.|-.|--+++.|+. .|+ .+|.++|-+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999999999988876 375 79999999866444
No 335
>PRK12828 short chain dehydrogenase; Provisional
Probab=62.31 E-value=13 Score=34.37 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=25.2
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++++.+++|.|| |..|..+++.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 466789999997 6666667666654 353 58888874
No 336
>PRK07588 hypothetical protein; Provisional
Probab=62.09 E-value=9.5 Score=39.18 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988865
No 337
>PLN02852 ferredoxin-NADP+ reductase
Probab=62.05 E-value=8.5 Score=42.35 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=30.9
Q ss_pred hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 325 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 325 ~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+-...||+|+|||.||+..|..|.+.. .| -+|.|+|+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 334455679999999999999999987531 24 378888876
No 338
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=62.04 E-value=35 Score=33.02 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=44.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh----chhhcc-ccCCCCCHHHH
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNNLLDA 406 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~----k~~~a~-~~~~~~~L~ea 406 (477)
+|+|.|| |..|-.+++.|+.. |- .-+++.+|+... ..+.+.+... ...+.. +..+..++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 88888888887653 31 136777775211 0111111111 111111 22223467888
Q ss_pred hcccCCcEEEeccCCC
Q 011816 407 VKVIKPTILIGSSGVG 422 (477)
Q Consensus 407 v~~vkptvLIG~S~~~ 422 (477)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 339
>PLN02463 lycopene beta cyclase
Probab=62.03 E-value=8.9 Score=41.42 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
-.|+|+|||.||+.+|..+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~ 49 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE 49 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 478999999999999988764
No 340
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=61.93 E-value=10 Score=40.02 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=27.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999988865 25 4799999864
No 341
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=61.80 E-value=8.8 Score=39.26 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999987754 354 57777765
No 342
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=61.79 E-value=56 Score=34.42 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCceecc-CCCchHHHHHHHHHHHHHHhC-CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhc
Q 011816 289 AFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (477)
Q Consensus 289 af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alr~~g-~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~ 366 (477)
+.+.+.+| ..+||+|= |-..=-.=+||=++.-.+..| +++++.+|.++|-+.- .+++-++.++.+ .|+
T Consensus 113 ~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~~Sl~~~~~~-~g~------ 182 (336)
T PRK03515 113 IVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMGNSLLEAAAL-TGL------ 182 (336)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHHHHHHHHHHH-cCC------
Confidence 33334444 47999993 222233456777777777766 4799999999998632 367777666654 465
Q ss_pred CeEEEEccCCcccCCCCCCCchhchhhccc-cC---CCCCHHHHhcccCCcEEEecc
Q 011816 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTILIGSS 419 (477)
Q Consensus 367 ~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~---~~~~L~eav~~vkptvLIG~S 419 (477)
++.++-.+|+.-.. + +-..-+.+++. .. -..++.|++++ +||+.-.+
T Consensus 183 -~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~ 233 (336)
T PRK03515 183 -DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDV 233 (336)
T ss_pred -EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecC
Confidence 68888887773321 1 11111233432 11 13689999998 99999864
No 343
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=61.71 E-value=8.3 Score=40.68 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+..||||+|+|.||+..|+.|.. . .-+|.++|.+-
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCCC
Confidence 3456799999999999998876621 1 23688888753
No 344
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=61.64 E-value=38 Score=34.78 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=23.7
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
-..++++|+|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak-~----~G~------~~Vi~~~~ 218 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGAR-M----AKA------SRIIAIDI 218 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CeEEEEcC
Confidence 45789999999987777655443 2 353 46777765
No 345
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.52 E-value=13 Score=40.79 Aligned_cols=104 Identities=18% Similarity=0.309 Sum_probs=66.0
Q ss_pred CCCCccccchhhHHHHHHhcCCCCCceeeEEe-ecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe
Q 011816 199 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 277 (477)
Q Consensus 199 lG~~gmgI~~GKl~LY~a~gGI~P~~~lPI~L-DvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~ 277 (477)
.||-| -||+++-.|.|+-==-....+.| .|+. |.+ +...+.+ += ++.
T Consensus 241 YGPPG----TGKSS~IaAmAn~L~ydIydLeLt~v~~-n~d-----------------------Lr~LL~~---t~-~kS 288 (457)
T KOG0743|consen 241 YGPPG----TGKSSFIAAMANYLNYDIYDLELTEVKL-DSD-----------------------LRHLLLA---TP-NKS 288 (457)
T ss_pred eCCCC----CCHHHHHHHHHhhcCCceEEeeeccccC-cHH-----------------------HHHHHHh---CC-CCc
Confidence 56665 37999999999865223666666 5663 332 2333332 33 778
Q ss_pred eeeeecCCcccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCc
Q 011816 278 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (477)
Q Consensus 278 lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA 339 (477)
+|-+|||... |.+=++-..+-.-|++ .-.-|+|+||||++--.-..=.+.||+|+=.
T Consensus 289 IivIEDIDcs--~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDCS--FDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeecccc--cccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 8999999643 4443443333333333 4567999999999875555555788888864
No 346
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=61.34 E-value=10 Score=39.38 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=31.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC--CcccCCCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLIVSSRK 383 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~--GLi~~~r~ 383 (477)
...|+|+|||.||+..|-.|.. .|+ ++-++++. .+...+|.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~~~~~~~~~r~ 44 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERAPRELLERGRG 44 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccCccccccCcee
Confidence 4579999999999999988865 375 68888886 44444443
No 347
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=61.32 E-value=11 Score=40.62 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.-+++|+|||.+|+++|..|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999998764 663 277777764
No 348
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=61.26 E-value=10 Score=40.32 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999999988754 24 368888875
No 349
>PRK08244 hypothetical protein; Provisional
Probab=61.21 E-value=9.7 Score=40.77 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
..|+|+|||.+|+..|-.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 569999999999999988865
No 350
>PRK06185 hypothetical protein; Provisional
Probab=61.17 E-value=9.7 Score=39.18 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=26.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999977754 365 567777753
No 351
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=60.95 E-value=9.8 Score=42.10 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.8
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
.||+|+|||.+|+..|+.+++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e 22 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE 22 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHH
Confidence 589999999999999999876
No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.87 E-value=13 Score=39.64 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=23.6
Q ss_pred hCCCCccceEEEeCcchHHHHHHHHHHH
Q 011816 325 IGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 325 ~g~~l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
.+..++.++++|+|+|.+|+.+|+.|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 3456778899999999999999988864
No 353
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.40 E-value=3.3 Score=48.25 Aligned_cols=130 Identities=22% Similarity=0.314 Sum_probs=77.4
Q ss_pred HHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEc
Q 011816 294 AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (477)
Q Consensus 294 ~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (477)
.||-..|.||.++-| ++|.++++.++|||+.|+-..+-++.. |+.-.+. ..|.+.|
T Consensus 411 sRYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTD 466 (1013)
T KOG2012|consen 411 SRYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTD 466 (1013)
T ss_pred CccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEec
Confidence 366667777766544 689999999999999998877776542 5532221 2466666
Q ss_pred cCCcccCCCCCCCchhchhhc-ccc--CCC--CCHHHHhcccCCcEEEec-------cCCCCCCCHHHHHHHHcCCCCcE
Q 011816 374 SKGLIVSSRKDSLQHFKKPWA-HEH--EPV--NNLLDAVKVIKPTILIGS-------SGVGRTFTKEVIEAMASFNEKPL 441 (477)
Q Consensus 374 ~~GLi~~~r~~~l~~~k~~~a-~~~--~~~--~~L~eav~~vkptvLIG~-------S~~~g~Ft~evv~~Ma~~~erPI 441 (477)
-+ .|.++ +|+. .|- |+. ... ..-.+|+...+|++-|=. -+ -++|+.+--+.+. =|
T Consensus 467 mD-~IEkS---NLnR---QFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~V 533 (1013)
T KOG2012|consen 467 MD-HIEKS---NLNR---QFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GV 533 (1013)
T ss_pred cc-hhhhc---cccc---eeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HH
Confidence 54 23332 2432 222 221 111 346788999999988632 22 2477777666652 12
Q ss_pred EEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 011816 442 ILALSNPTSQSECTAEEAYTWSKVQTII 469 (477)
Q Consensus 442 IFaLSNPt~~~E~tpe~A~~~t~G~aif 469 (477)
+=||=|= ||-.|.|.||+|
T Consensus 534 anALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 534 ANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHhhcch---------hhhhhhhhhhhh
Confidence 3344443 456667777765
No 354
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=60.33 E-value=28 Score=39.44 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|..+|+.+... |. ..+++.+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC
Confidence 6899999999999999998653 53 2358888874
No 355
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.19 E-value=12 Score=37.39 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999998753 53 67888864
No 356
>PRK05993 short chain dehydrogenase; Provisional
Probab=59.95 E-value=19 Score=35.12 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=21.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+++|.|| |..|..+|+.+.+ .|. ++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~~-----~G~-------~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-----DGW-------RVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECC
Confidence 57899998 6666667766643 353 68888764
No 357
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=59.88 E-value=11 Score=38.83 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.2
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (477)
..+|+|+|||.||+..|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4679999999999999988765
No 358
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=59.77 E-value=14 Score=38.58 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=26.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCccc
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~ 379 (477)
|+|+|||.||+.+|-.|.+. ..|+ ++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCCCC
Confidence 78999999999999877643 1243 677888765433
No 359
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=59.62 E-value=12 Score=38.35 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=57.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc---ccCCCCCHHHHh
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 407 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~---~~~~~~~L~eav 407 (477)
-.++.|+|+|.-|..-++.+... .++ ++|++.|+. ..+ ...+...+.+ ......++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36899999999988888877654 233 788888863 111 2233333332 112246899999
Q ss_pred cccCCcEEEeccCCCC---CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHH
Q 011816 408 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 459 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g---~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~A 459 (477)
+. +||++-++.... +|+.++++ +.-.|-++.--+ .+.|+.++-.
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHHh
Confidence 98 999998765432 68888886 455777776422 2468887643
No 360
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=59.45 E-value=13 Score=39.40 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc--
Q 011816 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-- 396 (477)
Q Consensus 319 l~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-- 396 (477)
..++.-....|...|++|+|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+...
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456778899999988888999987643 4873 3333211 1111 1011111111000
Q ss_pred ---cCCCCCHHHHhcccCCcEEEeccC
Q 011816 397 ---HEPVNNLLDAVKVIKPTILIGSSG 420 (477)
Q Consensus 397 ---~~~~~~L~eav~~vkptvLIG~S~ 420 (477)
..+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 111124668888899999999754
No 361
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=59.41 E-value=9.2 Score=39.48 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 368999999999999988754 365 57777765
No 362
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=59.40 E-value=12 Score=38.86 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=25.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 4579999999999999977654 365 56777764
No 363
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=59.40 E-value=13 Score=42.34 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=28.7
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-...+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 4578999999999999999998753 53 68888874
No 364
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=59.37 E-value=11 Score=41.12 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
-.|||+|+|.+|++||..+... |+ ++.++|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 4699999999999999887653 65 5888988643
No 365
>PRK07538 hypothetical protein; Provisional
Probab=59.36 E-value=11 Score=39.27 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.4
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999987755
No 366
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.28 E-value=12 Score=37.74 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=19.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (477)
.||.|+|||..|.+||.+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 3899999999999999988764
No 367
>PLN02676 polyamine oxidase
Probab=59.18 E-value=26 Score=38.20 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.8
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (477)
..+++|+|||.+|++.|..|.+
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHH
Confidence 5579999999999999999876
No 368
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=59.10 E-value=12 Score=37.92 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=26.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCCC
Confidence 58999999999999988764 25 368889986543
No 369
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=59.09 E-value=11 Score=39.94 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3689999999999999987653 5 4788999764
No 370
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=58.99 E-value=81 Score=30.62 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=29.2
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
++.+.++. +|++|..|... .|.-.++++|+ ...|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 46677776 89999888765 47888999999 4789985
No 371
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=58.87 E-value=8.7 Score=41.56 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.2
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.|++-+|+++|+|+.|.-+++.|+.. |+ ++|.++|..
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999999875 76 689999986
No 372
>PRK12831 putative oxidoreductase; Provisional
Probab=58.74 E-value=13 Score=40.18 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 457899999999999999988763 53 67788863
No 373
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=58.67 E-value=11 Score=39.96 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=33.6
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
.+++++=||++|||..|--++++|+.. |+ ++|-+||-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999874 65 68888887644
No 374
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=58.66 E-value=16 Score=39.34 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=54.4
Q ss_pred HHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccC
Q 011816 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE 398 (477)
Q Consensus 319 l~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~ 398 (477)
+.++.-....|...|++++|-+.-..++++.+.+ .|+.. ..+. ++.+.- ....+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~-~~~~~~----~~~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAV-TTTGSP----LLQKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEE-eCCCCH----HHHhCCcC-cEEe---C
Confidence 3444444456678999999988888999999754 47732 1111 221100 00001110 0111 2
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 011816 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 442 (477)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (477)
+...|++.++..+||++||-|- .+.+-+.+ .-|.|
T Consensus 361 D~~~l~~~i~~~~~dliig~s~-----~k~~A~~l----~ip~i 395 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH-----GRALAQRL----ALPLV 395 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc-----hHHHHHHc----CCCEE
Confidence 2246788898889999998664 23344444 57876
No 375
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=58.58 E-value=13 Score=37.66 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
...|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecccC
Confidence 35699999999999999887652 5 37889997643
No 376
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=58.53 E-value=34 Score=35.49 Aligned_cols=97 Identities=19% Similarity=0.114 Sum_probs=57.4
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh--chhhcc-ccCCCCCHHH
Q 011816 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 405 (477)
Q Consensus 330 ~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~--k~~~a~-~~~~~~~L~e 405 (477)
+++||+|.|| |-.|..+++.|.+. |. +++.+|+..- ..+... ...+-. +..+...+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-----G~-------~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-----GH-------YIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-----CC-------EEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4579999998 99999999888652 52 6888886431 001110 111111 1111223555
Q ss_pred HhcccCCcEEEeccCCCC--C---------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 406 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g--~---------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++ ++|++|=+.+..+ . .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 4899998875431 0 2355777777666678998644
No 377
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=58.48 E-value=35 Score=36.55 Aligned_cols=97 Identities=18% Similarity=0.369 Sum_probs=64.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC------chhchhhccc--cC-C---
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL------QHFKKPWAHE--HE-P--- 399 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l------~~~k~~~a~~--~~-~--- 399 (477)
.||.++|+|.=|..||+++-.-.. +.+.-+..=++|.++.. ..++..+| +++.-+|-.. .+ +
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 799999999999999999976432 33344556689998864 22211111 2222344421 12 2
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCC
Q 011816 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 438 (477)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~e 438 (477)
..+|.|+++. +|+||= +.|-.|++.+++.+..+-+
T Consensus 96 v~dl~ea~~d--ADilvf--~vPhQf~~~ic~~l~g~vk 130 (372)
T KOG2711|consen 96 VPDLVEAAKD--ADILVF--VVPHQFIPRICEQLKGYVK 130 (372)
T ss_pred cchHHHHhcc--CCEEEE--eCChhhHHHHHHHHhcccC
Confidence 2689999998 999984 3455899999999985543
No 378
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=58.43 E-value=84 Score=32.43 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCceeccC-CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcC
Q 011816 289 AFELLAKYGTTHLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (477)
Q Consensus 289 af~iL~ryr~~~~~FnDD-iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~ 367 (477)
+.+.+.+| .++||+|=+ -..=-.=+|+=++.-.+..| .+++.||+++|-.. .+++-++.++.+ .|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------
Confidence 34444454 468999942 22223446777776666666 49999999999863 478887777765 464
Q ss_pred eEEEEccCCcccCCCCCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEecc
Q 011816 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSS 419 (477)
Q Consensus 368 ~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvLIG~S 419 (477)
++.++-.+++.-.. ...+.-+.+++.. ....++.+++++ +||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 78888887763321 1111122333321 123689999998 99998764
No 379
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=58.31 E-value=12 Score=38.20 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=26.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 4579999999999999977654 364 577888764
No 380
>PRK10262 thioredoxin reductase; Provisional
Probab=58.27 E-value=8.9 Score=38.42 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.7
Q ss_pred CccceEEEeCcchHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
-+..+|||+|||+||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999998865
No 381
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=58.09 E-value=12 Score=44.76 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.4
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-+.+||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 3568999999999999999998653 53 57888865
No 382
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.06 E-value=21 Score=35.63 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=25.5
Q ss_pred CCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 326 GGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 326 g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..+++.+++|.|| |-.|..+|+.+++ .|. ++++++++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~-----~G~-------~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFAR-----RGA-------TVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECC
Confidence 45577789999998 4455556666543 353 68888875
No 383
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=58.03 E-value=66 Score=29.41 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.9
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (477)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999977 6888888764 444556666444454
No 384
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=58.00 E-value=13 Score=44.10 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=32.0
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC----CcccCC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVSS 381 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~----GLi~~~ 381 (477)
-...||+|+|||.||+..|..|... |. ++.++|+. |++.-+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~yG 348 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRYG 348 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEcc
Confidence 3579999999999999999998753 54 57888875 665443
No 385
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=57.94 E-value=9.3 Score=37.60 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=33.4
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-++|++-|++++|+|.-|..+++.|+.+ |+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 4578899999999999999999999875 65 569999986
No 386
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=57.92 E-value=10 Score=38.83 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.9
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
+|+|+|||.||+..|-.|.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988865
No 387
>PRK11445 putative oxidoreductase; Provisional
Probab=57.74 E-value=12 Score=38.28 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.8
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
.|+|+|||.||...|..|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999988755
No 388
>PLN02427 UDP-apiose/xylose synthase
Probab=57.60 E-value=31 Score=35.55 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=51.2
Q ss_pred HHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch-------hchhh
Q 011816 322 LKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-------FKKPW 393 (477)
Q Consensus 322 lr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~-------~k~~~ 393 (477)
+.+.||+++-.||+|.|| |-.|..+++.|++. .| .+++.+|+.. .+...+.+ ...+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 456799999999999996 99999998888752 12 3677787531 11011110 01122
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCC
Q 011816 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGV 421 (477)
Q Consensus 394 a~-~~~~~~~L~eav~~vkptvLIG~S~~ 421 (477)
.+ +..+...+.+++++ +|++|=+.+.
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~ 96 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAI 96 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEcccc
Confidence 22 11222457788876 8999977764
No 389
>PRK10015 oxidoreductase; Provisional
Probab=57.42 E-value=12 Score=39.84 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
-.++|+|||.||...|-.+.+ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988765 364 577777653
No 390
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=57.30 E-value=26 Score=36.05 Aligned_cols=116 Identities=14% Similarity=0.215 Sum_probs=65.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
+||.++|.|+.|-.|++.|... +. +..+-.++.|+.- + ..+.++...+.+.+|.+.+. .+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~-------~~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----D-------LPPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----H-------HHHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987542 11 0122344455421 1 11223333344678888643 36
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEE-E---EcCCCCCCCCCCHHHHhcccCCcEEEEcC
Q 011816 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLI-L---ALSNPTSQSECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPII-F---aLSNPt~~~E~tpe~A~~~t~G~aifAsG 472 (477)
||+++=+.++. ++.+-..+.+.+ .+.+| + ||+++. =+-.-.++-+...++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~--g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA--GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc--CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999998865 555544555542 23333 2 244444 122223344445678888887
No 391
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=56.90 E-value=17 Score=37.62 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 355799999999999999888752 242 47999998643
No 392
>PRK12829 short chain dehydrogenase; Provisional
Probab=56.88 E-value=37 Score=32.20 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=24.2
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+++.+++|.|| |..|..+++.+++ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~-----~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAE-----AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 378899999998 4455556665543 353 58888753
No 393
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=56.86 E-value=24 Score=37.33 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=42.3
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLD 405 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e 405 (477)
..|++.+|.|+|-|+-|.++|+.+... |+ +++..|+.+ .+ .+ .|.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~-----~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FE-----VAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hH-----HHHHcCCEECCHHH
Confidence 357889999999999999999998753 65 566666532 11 11 1111 111237888
Q ss_pred HhcccCCcEEE
Q 011816 406 AVKVIKPTILI 416 (477)
Q Consensus 406 av~~vkptvLI 416 (477)
+++. +|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 8887 88876
No 394
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=56.67 E-value=66 Score=29.75 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNP 448 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNP 448 (477)
+-|++|++|..| -|+++++.+. +...-|+|. ++|.
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~-IT~~ 137 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALEAAKERGMKTIA-LTGR 137 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEE-EeCC
Confidence 479999999877 6999999885 334456665 5543
No 395
>PRK06834 hypothetical protein; Provisional
Probab=56.66 E-value=14 Score=40.08 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+..|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999998865 365 567777653
No 396
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.62 E-value=37 Score=32.03 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=92.4
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC--ceeeccCCCCCC--ccccchhhHHHHHHhcCCCCCceeeE
Q 011816 153 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 228 (477)
Q Consensus 153 i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--gmgI~~GKl~LY~a~gGI~P~~~lPI 228 (477)
+-+++.|+-++..|.....+.++.+...++.|+.+-.. ..-..+--.|++ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46779999999999988888888888888988887555 222222223443 46677777777666654 445
Q ss_pred EeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeee---eecCCcccHHHHHHHHcCCC---ce
Q 011816 229 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQ---FEDFANHNAFELLAKYGTTH---LV 302 (477)
Q Consensus 229 ~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq---~EDf~~~~af~iL~ryr~~~---~~ 302 (477)
++=.|.. ......+.++-|.++++. ++.-.++. ..+.....+.+..+++-... .+
T Consensus 126 ~~~~~~~------------------~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i 186 (257)
T PF13407_consen 126 LILSGSP------------------GNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANPVDAI 186 (257)
T ss_dssp EEEESST------------------TSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEEE
T ss_pred EeccCCC------------------CchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCCceEE
Confidence 5444421 112333557788888888 64322222 23677777776666553221 22
Q ss_pred eccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCc
Q 011816 303 FNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (477)
Q Consensus 303 FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA 339 (477)
|. +....+-|++.|++-.|+ -.+..++-+|.
T Consensus 187 ~~-----~~~~~~~g~~~al~~~g~-~~~~~v~g~d~ 217 (257)
T PF13407_consen 187 IA-----CNDGMALGAAQALQQAGR-AGKVIVVGFDG 217 (257)
T ss_dssp EE-----SSHHHHHHHHHHHHHTTC-TTTSEEEEEEC
T ss_pred Ee-----CCChHHHHHHHHHHHcCC-cccceeecCCC
Confidence 22 223344477888888887 22333444443
No 397
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=56.60 E-value=13 Score=40.46 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||+++|||+.|+-+++.|+.+ |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652211 2689999986
No 398
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=56.57 E-value=13 Score=44.62 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=27.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 4799999999999999998865 253 68888865
No 399
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=56.49 E-value=14 Score=41.76 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=27.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...||+|+|||.||+..|..+... |. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457999999999999999988652 53 57788864
No 400
>PRK14694 putative mercuric reductase; Provisional
Probab=56.48 E-value=14 Score=39.44 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999988763 4 378888874
No 401
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=56.47 E-value=77 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=29.1
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
++.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 265 ~~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 35566666 89999888654 48889999999 5899987
No 402
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=56.41 E-value=91 Score=32.88 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCceec---cCCCchHHHHHHHHHHHHHHhC-CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhh
Q 011816 289 AFELLAKYGTTHLVFN---DDIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (477)
Q Consensus 289 af~iL~ryr~~~~~Fn---DDiQGTaaV~LAgll~Alr~~g-~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~ee 364 (477)
..+.+.+| .++||.| |..|=| =+||=++.-.+..| +++++.||+++|-+.- .+++-++.++.+ .|+
T Consensus 113 ~~~~~a~~-~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~--~v~~S~~~~~~~-~G~---- 182 (334)
T PRK12562 113 VVETLAEY-AGVPVWNGLTNEFHPT--QLLADLLTMQEHLPGKAFNEMTLVYAGDARN--NMGNSMLEAAAL-TGL---- 182 (334)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHhCCCCcCCcEEEEECCCCC--CHHHHHHHHHHH-cCC----
Confidence 44444454 4789999 333433 45677777666666 4699999999998742 366776666555 475
Q ss_pred hcCeEEEEccCCcccCCCCCCCchhchhhccc-cCC---CCCHHHHhcccCCcEEEecc
Q 011816 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP---VNNLLDAVKVIKPTILIGSS 419 (477)
Q Consensus 365 A~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~---~~~L~eav~~vkptvLIG~S 419 (477)
++.++-.+|+.-.. + .-+.-+.+++. ... ..++.||+++ +||+.-.+
T Consensus 183 ---~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~ 233 (334)
T PRK12562 183 ---DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFIYTDV 233 (334)
T ss_pred ---EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887763321 1 11111233332 111 2689999998 99999875
No 403
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=56.41 E-value=14 Score=39.30 Aligned_cols=33 Identities=30% Similarity=0.511 Sum_probs=23.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
|||+|+|.||+..|-.... .|+ ++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999999887655 364 79999998865
No 404
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=56.25 E-value=35 Score=35.46 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCHHHHhcccCCcE-EEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 401 NNLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 401 ~~L~eav~~vkptv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
+.|.+..+. +|+ ++|-|-..+ |...++++|+ +..|||+
T Consensus 311 ~el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 311 GELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 356677776 898 777664332 4445899999 6899997
No 405
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=55.97 E-value=13 Score=40.46 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.2
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~ 352 (477)
..+|+|+|||.+|+..|-.|.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 4579999999999999988765
No 406
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=55.94 E-value=11 Score=38.86 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=33.7
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++|..-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc
Confidence 578899999999999999999999875 65 6899999863
No 407
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=55.93 E-value=15 Score=41.33 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 579999999999999999865 253 699999874
No 408
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=55.87 E-value=16 Score=39.16 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=37.7
Q ss_pred HHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEE
Q 011816 294 AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (477)
Q Consensus 294 ~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv 372 (477)
++|......+.|=..||+ .++++++++|.|| |..|..+|+.+.+ .|. +++++
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La~-----~G~-------~Vi~l 208 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELHQ-----QGA-------KVVAL 208 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEE
Confidence 355666788999888888 2466789999997 4555556666543 353 57777
Q ss_pred ccC
Q 011816 373 DSK 375 (477)
Q Consensus 373 D~~ 375 (477)
+++
T Consensus 209 ~r~ 211 (406)
T PRK07424 209 TSN 211 (406)
T ss_pred eCC
Confidence 654
No 409
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=55.67 E-value=15 Score=38.25 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999977754
No 410
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=55.67 E-value=21 Score=36.35 Aligned_cols=90 Identities=20% Similarity=0.348 Sum_probs=59.4
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCC-CCHH
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLL 404 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~-~~L~ 404 (477)
|..++ +++|+||=--|.+||+.|... + +|+++|-+ +|-+.+....-.. ..+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 45555 899999999999999988542 2 89999974 2222222110000 1111
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+ + .++||++|=++|-||+ +++.++.. .|=+|-.=||.+
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~~ 129 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPKG 129 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCCc
Confidence 1 1 2369999999999985 99999876 366777788883
No 411
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=55.65 E-value=13 Score=40.92 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.|||+|||.||+..|..+... | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999887652 4 3688888753
No 412
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=55.61 E-value=15 Score=37.88 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|+|+|||-+|+.+|-.+... | .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 699999999999999887642 4 368888885
No 413
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=55.60 E-value=12 Score=40.03 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=21.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|+|+|||+||+-.|-.+.+ .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999999988754 35 368888876
No 414
>PRK05868 hypothetical protein; Validated
Probab=55.38 E-value=15 Score=38.10 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.9
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999987754
No 415
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=55.32 E-value=90 Score=33.18 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=67.1
Q ss_pred HHHHHHhCCCCccceEEEeCcchHHHH-HHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc
Q 011816 319 VAALKLIGGTLAEHRFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 397 (477)
Q Consensus 319 l~Alr~~g~~l~d~riv~~GAGsAg~G-ia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~ 397 (477)
++|||..+.+ ..++++|+|+| |+| +|=|++.+| | -+++.+|+. +.|+++|+..
T Consensus 156 y~alk~~~~~-pG~~V~I~G~G--GlGh~avQ~Aka~----g-------a~Via~~~~------------~~K~e~a~~l 209 (339)
T COG1064 156 YRALKKANVK-PGKWVAVVGAG--GLGHMAVQYAKAM----G-------AEVIAITRS------------EEKLELAKKL 209 (339)
T ss_pred eeehhhcCCC-CCCEEEEECCc--HHHHHHHHHHHHc----C-------CeEEEEeCC------------hHHHHHHHHh
Confidence 5778874332 37899999999 555 444555543 4 368888762 2344444431
Q ss_pred -------CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCH-HHHhcccCCcEEE
Q 011816 398 -------EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTA-EEAYTWSKVQTII 469 (477)
Q Consensus 398 -------~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tp-e~A~~~t~G~aif 469 (477)
....+..++++. +.|++|=+.+ +-.| +..++.+. ..=.+.-..||...+..+. ...+- -+++.|.
T Consensus 210 GAd~~i~~~~~~~~~~~~~-~~d~ii~tv~-~~~~-~~~l~~l~---~~G~~v~vG~~~~~~~~~~~~~~li-~~~~~i~ 282 (339)
T COG1064 210 GADHVINSSDSDALEAVKE-IADAIIDTVG-PATL-EPSLKALR---RGGTLVLVGLPGGGPIPLLPAFLLI-LKEISIV 282 (339)
T ss_pred CCcEEEEcCCchhhHHhHh-hCcEEEECCC-hhhH-HHHHHHHh---cCCEEEEECCCCCcccCCCCHHHhh-hcCeEEE
Confidence 012345555555 3999998877 4333 34455554 5556666788852233322 22222 2567676
Q ss_pred Ec
Q 011816 470 LQ 471 (477)
Q Consensus 470 As 471 (477)
.|
T Consensus 283 GS 284 (339)
T COG1064 283 GS 284 (339)
T ss_pred EE
Confidence 54
No 416
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=55.30 E-value=22 Score=36.79 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=34.9
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 305 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 305 DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
|++.+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+... .|. ++|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCC
Confidence 444554444455554442222222333399999999999987443322 364 68998887
No 417
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=55.28 E-value=9.4 Score=32.67 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.4
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+|++.+++|+|+|..|..=+++|+++ | .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999999888888653 4 3788777754
No 418
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=55.20 E-value=12 Score=40.39 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=28.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+||||+|+|-+|+..|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999999987642 1 2368899985
No 419
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=55.18 E-value=15 Score=39.11 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=24.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.++|+|||.||+.+|..|.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988764 24 357777764
No 420
>PRK13938 phosphoheptose isomerase; Provisional
Probab=54.96 E-value=91 Score=30.24 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=27.4
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 449 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 449 (477)
+-|++|++|..| =|+++++.+. +...-|+|.=-+||.
T Consensus 113 ~~DllI~iS~SG--~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 113 PGDTLFAISTSG--NSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 479999999977 6899998873 455667776555554
No 421
>PLN02240 UDP-glucose 4-epimerase
Probab=54.91 E-value=25 Score=35.16 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=58.8
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch------hchhhcc-ccCC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 399 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~------~k~~~a~-~~~~ 399 (477)
.|+..||+|.|| |-.|..+++.|++. | .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 88888888888652 4 3688887542100000000000 0011111 1122
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEc
Q 011816 400 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaL 445 (477)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.=
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 131 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSS 131 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2356677776789999987764321 123566777665556788743
No 422
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=54.81 E-value=15 Score=40.47 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=27.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+-.|||+|+|..|++||..|... |+ ++.++|+..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECCC
Confidence 35699999999999999998753 64 688999853
No 423
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=54.80 E-value=15 Score=39.08 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+||+|||+||+..|..+.+. | .++.++|+.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 79999999999999888652 5 478889875
No 424
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=54.75 E-value=15 Score=38.77 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.+||+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888653 5 47889997
No 425
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=54.66 E-value=16 Score=39.56 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+++|+|||.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 34799999999999999988864 253 58888764
No 426
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=54.58 E-value=16 Score=38.66 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999887653 4 478889873
No 427
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=54.37 E-value=17 Score=39.16 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=68.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh---chhhcc-ccCCCCCHHHHh
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWAH-EHEPVNNLLDAV 407 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~---k~~~a~-~~~~~~~L~eav 407 (477)
.+||++|||-.|..+|..|++- |- .+|++.|+. .+..+.+... +...+. +..+...|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998762 31 589988873 1111111111 122222 334456799999
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC-cEEEEcC
Q 011816 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKV-QTIILQH 472 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G-~aifAsG 472 (477)
++ .|+.|.+-. +-++..++++-.+. .-+ ..-.||=.....---++|.+ .| .+|.-+|
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~~-gv~-yvDts~~~~~~~~~~~~a~~--Agit~v~~~G 124 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIKT-GVD-YVDTSYYEEPPWKLDEEAKK--AGITAVLGCG 124 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHHh-CCC-EEEcccCCchhhhhhHHHHH--cCeEEEcccC
Confidence 98 699987655 45888888776542 233 33355533212222334433 34 4555555
No 428
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=54.35 E-value=14 Score=40.05 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..|||+|+|.+|.++|..+... |+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECCC
Confidence 4799999999999999998753 65 588999773
No 429
>PRK06545 prephenate dehydrogenase; Validated
Probab=54.29 E-value=38 Score=35.25 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (477)
.||.|+|+|..|.++|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998653
No 430
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=54.26 E-value=19 Score=36.82 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=27.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..++|+|+|+|.||+.+|..+.+ .| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 45799999999999999988864 24 368888875
No 431
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=54.24 E-value=15 Score=39.18 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 89999999999999998865 25 478999975
No 432
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=54.16 E-value=17 Score=37.66 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 478899986
No 433
>PRK06126 hypothetical protein; Provisional
Probab=54.14 E-value=16 Score=39.60 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.1
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.+.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~ 39 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERK 39 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 345789999999999999988765 365 46677765
No 434
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=54.11 E-value=16 Score=38.58 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999988753 4 468899975
No 435
>PRK07190 hypothetical protein; Provisional
Probab=53.93 E-value=16 Score=39.65 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=25.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCCC
Confidence 3579999999999998876644 365 466777653
No 436
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=53.82 E-value=13 Score=41.88 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++..|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 467899999999999999888651 265 46677765
No 437
>PRK06138 short chain dehydrogenase; Provisional
Probab=53.79 E-value=27 Score=32.81 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|++.+++|.|| |.-|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~-----~G~-------~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAR-----EGA-------RVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHH-----CCC-------eEEEecCC
Confidence 467789999997 4555666666543 252 68877764
No 438
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=53.73 E-value=15 Score=39.93 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
.+.+|+|+|||.+|+..|..|.+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999988865
No 439
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=53.66 E-value=2.3e+02 Score=29.30 Aligned_cols=166 Identities=13% Similarity=0.145 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceecc--C--CCchHHHHHHHHHHHHHHhCCCCccceEEEe
Q 011816 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND--D--IQGTASVVLAGVVAALKLIGGTLAEHRFLFL 337 (477)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD--D--iQGTaaV~LAgll~Alr~~g~~l~d~riv~~ 337 (477)
+.+++..+. +| .++++ +-.+... ..+-+.+| ..+||.|= + .|=| =+||=++.-.+..| ++++.||+++
T Consensus 85 i~Dta~vls-~y-~D~iv-iR~~~~~-~~~~~a~~-s~vPVINa~~g~~~HPt--Q~LaDl~Ti~e~~g-~l~g~~va~v 156 (301)
T TIGR00670 85 LADTIKTLS-GY-SDAIV-IRHPLEG-AARLAAEV-SEVPVINAGDGSNQHPT--QTLLDLYTIYEEFG-RLDGLKIALV 156 (301)
T ss_pred HHHHHHHHH-Hh-CCEEE-EECCchh-HHHHHHhh-CCCCEEeCCCCCCCCcH--HHHHHHHHHHHHhC-CCCCCEEEEE
Confidence 444444444 45 33333 4444432 33334444 47899994 2 3444 45666666555555 6999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cC---CCCCHHHHhcccCCc
Q 011816 338 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPT 413 (477)
Q Consensus 338 GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~---~~~~L~eav~~vkpt 413 (477)
|-|.= .-+++-++.++.+ .|+ ++.++-.+|+- +++.....++. .. ...++.+++++ +|
T Consensus 157 GD~~~-~~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aD 218 (301)
T TIGR00670 157 GDLKY-GRTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--AD 218 (301)
T ss_pred ccCCC-CcHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CC
Confidence 98620 1345555555544 475 67777777661 22222223322 11 13689999998 99
Q ss_pred EEEeccCCCCC---------------CCHHHHHHHHcCCCCcEEE-EcCCCCCCCCCCHHHH
Q 011816 414 ILIGSSGVGRT---------------FTKEVIEAMASFNEKPLIL-ALSNPTSQSECTAEEA 459 (477)
Q Consensus 414 vLIG~S~~~g~---------------Ft~evv~~Ma~~~erPIIF-aLSNPt~~~E~tpe~A 459 (477)
|+.-.+-+..- +|++. |+...++.||+ ||- ..-|++.|-.
T Consensus 219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~el---l~~a~~~ai~mHclP---Rg~Ev~~~V~ 274 (301)
T TIGR00670 219 VLYVTRIQKERFPDPEEYEKYKGSYGITLER---LEAAKKGVIIMHPLP---RVDEIDPSVD 274 (301)
T ss_pred EEEECCccccccCCHHHHHHHhcCCeECHHH---HhhcCCCCEEECCCC---CCcccCHHHh
Confidence 99988754221 23333 44334567777 554 4467776543
No 440
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=53.54 E-value=11 Score=38.86 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|||+|+|.||+..|+.|... + ..-+|.++++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988652 1 123677776644
No 441
>PRK06841 short chain dehydrogenase; Provisional
Probab=53.53 E-value=21 Score=33.78 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=25.4
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++++.+++|.|| |..|..+|+.+++ .|. +++++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467889999997 6666667766653 353 57778764
No 442
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=53.51 E-value=18 Score=36.13 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999998763 5 368888853
No 443
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=53.41 E-value=55 Score=32.65 Aligned_cols=86 Identities=12% Similarity=0.256 Sum_probs=51.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
||+|.|| |-.|-.+++.|... | +++.+|+..- .+.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~-----g--------~V~~~~~~~~--------------~~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPL-----G--------NLIALDVHST--------------DYCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhcc-----C--------CEEEeccccc--------------cccCCCCCHHHHHHHHHhcC
Confidence 7999997 99999888877531 2 3666665311 01011122235777888888
Q ss_pred CcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEEcC
Q 011816 412 PTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 412 ptvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFaLS 446 (477)
||++|=+.+..+.- |..+++.+.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776543211 233555555544 46887544
No 444
>PRK07589 ornithine cyclodeaminase; Validated
Probab=53.38 E-value=71 Score=33.74 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=64.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc---CCCCCHHHHh
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 407 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~eav 407 (477)
-.++.|+|+|.-+..-++.++... . -++|++.|+. ..+ ...+.+.+.+.. ....++++++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr----~------i~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALL----G------IEEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhC----C------ceEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 478999999998887777766531 2 3678877663 211 222222222211 1136899999
Q ss_pred cccCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 011816 408 KVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 458 (477)
Q Consensus 408 ~~vkptvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tpe~ 458 (477)
+. +||++-++... -+|..++++. .--|-++ |+--.+-|+.++-
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 98 99999876432 3688888853 2234444 4544568998875
No 445
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=53.28 E-value=13 Score=35.48 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++.+.+++|.|| |.-|..||+.+++ .|. +++++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cCC-------EEEEEcCC
Confidence 467889999997 5556666666654 353 67888764
No 446
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=53.25 E-value=56 Score=31.73 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=51.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc----hhhcc-ccCCCCCHHHH
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 406 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k----~~~a~-~~~~~~~L~ea 406 (477)
||+|.|| |..|..+++.|++ .| .+++++|+. .......+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5778875 8788888877764 24 256677642 111011111110 01111 22223457777
Q ss_pred hcccCCcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEE
Q 011816 407 VKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFa 444 (477)
++..++|++|=+.+..... +..+++.|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8766899998665532111 2355677776555678773
No 447
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=53.22 E-value=15 Score=37.87 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=23.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~-----~G~-------~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ-----KGI-------KTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc-----CCC-------eEEEecCC
Confidence 58999999999999988754 365 45666653
No 448
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=53.13 E-value=64 Score=32.85 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=24.2
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
-..++|+|+|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak-~----~G~------~~vi~~~~ 220 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGAR-I----RGA------SRIIGVDL 220 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CeEEEEcC
Confidence 45789999999988877665543 2 353 46777765
No 449
>PLN02568 polyamine oxidase
Probab=53.11 E-value=8.5 Score=42.59 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
+..+|+|+|||.||++.|..|.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 450
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=53.08 E-value=1.2e+02 Score=31.85 Aligned_cols=112 Identities=22% Similarity=0.306 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCceec---cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhh
Q 011816 289 AFELLAKYGTTHLVFN---DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (477)
Q Consensus 289 af~iL~ryr~~~~~Fn---DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA 365 (477)
+.+.+.+| .++||.| |+.|=| =+||=++.-.+.. ..|+..||+++|.+.- ++++-++.++.+ .|+
T Consensus 114 ~~~~~a~~-~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~-g~l~g~~va~vGd~~~--~v~~Sl~~~~~~-~g~----- 181 (331)
T PRK02102 114 IVEELAKY-SGVPVWNGLTDEWHPT--QMLADFMTMKEHF-GPLKGLKLAYVGDGRN--NMANSLMVGGAK-LGM----- 181 (331)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHh-CCCCCCEEEEECCCcc--cHHHHHHHHHHH-cCC-----
Confidence 34444444 4689988 334444 3556655544444 4699999999999843 477877776655 464
Q ss_pred cCeEEEEccCCcccCCCCCCCchhchhhccc-cCC---CCCHHHHhcccCCcEEEecc
Q 011816 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP---VNNLLDAVKVIKPTILIGSS 419 (477)
Q Consensus 366 ~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~---~~~L~eav~~vkptvLIG~S 419 (477)
++.++-.+|+.-.. + .-+.-+.+++. ... ..++.+|+++ +||+.-.+
T Consensus 182 --~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~ 232 (331)
T PRK02102 182 --DVRICAPKELWPEE--E-LVALAREIAKETGAKITITEDPEEAVKG--ADVIYTDV 232 (331)
T ss_pred --EEEEECCcccccCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887763321 1 11111223322 111 2689999998 99998764
No 451
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=52.86 E-value=17 Score=38.75 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34799999999999999888653 5 478999975
No 452
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=52.82 E-value=16 Score=36.92 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 489999999999999888652 5 358888875
No 453
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=52.69 E-value=57 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999999865 242 56777764
No 454
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.59 E-value=19 Score=38.87 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.3
Q ss_pred CccceEEEeCcchHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
+...||+|+|+|-+|.++|+.+..
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~ 36 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSE 36 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHH
Confidence 556789999999999999999875
No 455
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=52.52 E-value=96 Score=32.57 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=66.9
Q ss_pred CCCceec---cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 298 TTHLVFN---DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 298 ~~~~~Fn---DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.++||+| |..|=| =+|+=++.-.+....++++.||+++|-+.. .+++-++.++.+ .|+ +|.++=.
T Consensus 121 s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P 188 (332)
T PRK04284 121 SGVPVWNGLTDEDHPT--QVLADFLTAKEHLKKPYKDIKFTYVGDGRN--NVANALMQGAAI-MGM-------DFHLVCP 188 (332)
T ss_pred CCCCEEECCCCCCChH--HHHHHHHHHHHHhcCCcCCcEEEEecCCCc--chHHHHHHHHHH-cCC-------EEEEECC
Confidence 4799999 444444 456666665554234699999999998732 477777666655 475 6888888
Q ss_pred CCcccCCCCCCCchhchhhccc-c---CCCCCHHHHhcccCCcEEEecc
Q 011816 375 KGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 419 (477)
Q Consensus 375 ~GLi~~~r~~~l~~~k~~~a~~-~---~~~~~L~eav~~vkptvLIG~S 419 (477)
+|+.-.+ +.+... +.+++. . ....++.|++++ +||+.-.+
T Consensus 189 ~~~~~~~--~~~~~~-~~~~~~~g~~~~~~~d~~ea~~~--aDvvy~~~ 232 (332)
T PRK04284 189 KELNPDD--ELLNKC-KEIAAETGGKITITDDIDEGVKG--SDVIYTDV 232 (332)
T ss_pred ccccCCH--HHHHHH-HHHHHHcCCeEEEEcCHHHHhCC--CCEEEECC
Confidence 7773321 112111 233332 1 123689999998 99998764
No 456
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=52.28 E-value=13 Score=42.51 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=27.6
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.-+..+|+|+|||.||+..|-.|.+ .|+ ++.++++.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r-----~Gi-------~V~V~Er~ 113 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKK-----KGF-------DVLVFEKD 113 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHh-----cCC-------eEEEEecc
Confidence 3556889999999999999988876 365 45666653
No 457
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=52.14 E-value=18 Score=37.90 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+|+|||.||+.+|..|.++ |. .+-++|+-
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcC
Confidence 489999999999999998764 64 46677764
No 458
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=52.01 E-value=11 Score=41.62 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=20.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (477)
+||+|+|||-||++.|..|.++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~ 22 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA 22 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC
Confidence 5899999999999999999875
No 459
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=51.93 E-value=22 Score=35.81 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=31.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHH--hhCCCChhhhcCeEEEEccCCc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEIS--KQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~--~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+..||+++|+|.-|.-+++.|+.... +.-|.+ .--+|.++|.+-+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~---~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP---GGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC---CCCEEEEECCCEE
Confidence 46799999999999999999987510 001210 0128999998743
No 460
>PRK08655 prephenate dehydrogenase; Provisional
Probab=51.91 E-value=69 Score=34.59 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=24.1
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||.|+| .|..|..+|..+... |. +++++|++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-----G~-------~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-----GF-------EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 789998 799999999988652 42 57777763
No 461
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=51.73 E-value=33 Score=34.66 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=56.6
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHH
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~ea 406 (477)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|+...-...-...+...+..+.. +..+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 78888888887653 30 136888876421000000000000111111 22222457777
Q ss_pred hcccCCcEEEeccCCCCC----C------------CHHHHHHHHcCCCCcEEEEcC
Q 011816 407 VKVIKPTILIGSSGVGRT----F------------TKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~----F------------t~evv~~Ma~~~erPIIFaLS 446 (477)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 876 8999977664311 1 234566666555567888543
No 462
>PRK00536 speE spermidine synthase; Provisional
Probab=51.54 E-value=21 Score=36.31 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=47.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCC-CCHHHHhccc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~-~~L~eav~~v 410 (477)
.||+|+|+|-.| +++-+++. .+++.|||-++-|++--...++.....|..+.-+. .-+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh------------~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY------------DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc------------CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999875 45555443 13899999998777543333555544343211111 1122211 13
Q ss_pred CCcEEEeccCCCCCCCHHHHHHH
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAM 433 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~M 433 (477)
+-||+|-=|. |+++-.+.+
T Consensus 139 ~fDVIIvDs~----~~~~fy~~~ 157 (262)
T PRK00536 139 KYDLIICLQE----PDIHKIDGL 157 (262)
T ss_pred cCCEEEEcCC----CChHHHHHH
Confidence 5888886553 666655444
No 463
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=51.37 E-value=22 Score=35.92 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
...+|+|+|+|-+|+.+|-.|.+. |. ++.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 357899999999999999888763 53 78888877654
No 464
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.36 E-value=48 Score=31.35 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=24.9
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+++..+++|.|| |..|..+++.|++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356678999998 6666677776654 353 57777764
No 465
>PRK06392 homoserine dehydrogenase; Provisional
Probab=51.02 E-value=66 Score=33.62 Aligned_cols=82 Identities=15% Similarity=0.270 Sum_probs=48.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-hhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCC--CHHH
Q 011816 333 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVN--NLLD 405 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~-~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~--~L~e 405 (477)
||.++|.|..|-+++++|.+.-. ++.|+. .+=+-+.|++|.+...+.=++.+.. .+... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~-~~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKII-SYKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHH-HHHhcCccccCCCCcCCHHH
Confidence 79999999999999999865210 112321 1235567999988876531222211 11110 01112 5666
Q ss_pred HhcccCCcEEEeccC
Q 011816 406 AVKVIKPTILIGSSG 420 (477)
Q Consensus 406 av~~vkptvLIG~S~ 420 (477)
.++ .++||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999999884
No 466
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=50.90 E-value=48 Score=34.19 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (477)
.||.|+|||+.|.-.+-.|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 4899999999999998888764
No 467
>PRK09897 hypothetical protein; Provisional
Probab=50.85 E-value=20 Score=39.93 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|+|+|||++|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999762 2 12379999984
No 468
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=50.77 E-value=2.2e+02 Score=29.99 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=60.9
Q ss_pred CCCceec--c--CCCchHHHHHHHHHHHHHHh---CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE
Q 011816 298 TTHLVFN--D--DIQGTASVVLAGVVAALKLI---GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 370 (477)
Q Consensus 298 ~~~~~Fn--D--DiQGTaaV~LAgll~Alr~~---g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~ 370 (477)
.++||.| | ..|=|= +||=++.-.+.. |+++++.||+++|.+.=+ -++.-++..+....|+ +++
T Consensus 121 ~~vPVINa~~g~~~HPtQ--aLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~-rv~~Sl~~~l~~~~g~-------~v~ 190 (338)
T PRK08192 121 SRVPVINGGDGSNEHPTQ--ALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFG-RTVHSLSRLLCMYKNV-------SFT 190 (338)
T ss_pred CCCCEEECCCCCCCCcHH--HHHHHHHHHHHhhccCCCcCCCEEEEECcCCCC-chHHHHHHHHHHhcCC-------EEE
Confidence 4689999 3 245553 445555444432 567999999999997311 1233333222222354 688
Q ss_pred EEccCCcccCCCCCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEeccCCC
Q 011816 371 LVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSGVG 422 (477)
Q Consensus 371 lvD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvLIG~S~~~ 422 (477)
++-.+|+-- ++.-...++.. ....++.||+++ +||+.-.+.+.
T Consensus 191 ~~~P~~~~~-------~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~~q~ 237 (338)
T PRK08192 191 LVSPKELAM-------PDYVISDIENAGHKITITDQLEGNLDK--ADILYLTRIQE 237 (338)
T ss_pred EECCccccC-------CHHHHHHHHHcCCeEEEEcCHHHHHcc--CCEEEEcCccc
Confidence 888877621 11111122211 123689999998 99999986653
No 469
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=50.74 E-value=88 Score=31.26 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc
Q 011816 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 397 (477)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~ 397 (477)
++.|++...+...+.+++|+|.|...--+.+++ ++.++ ..++.+..
T Consensus 222 li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~-----~~~~~-----~~~v~~~g------------------------ 267 (372)
T cd04949 222 LIKAFAKVVKQVPDATLDIYGYGDEEEKLKELI-----EELGL-----EDYVFLKG------------------------ 267 (372)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHH-----HHcCC-----cceEEEcC------------------------
Confidence 455555555566789999999987643332222 11232 12222211
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 398 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 398 ~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
...++.+.++. ++++|=.|... .|.-.++++|+ +..|||-
T Consensus 268 -~~~~~~~~~~~--ad~~v~~S~~E-g~~~~~lEAma--~G~PvI~ 307 (372)
T cd04949 268 -YTRDLDEVYQK--AQLSLLTSQSE-GFGLSLMEALS--HGLPVIS 307 (372)
T ss_pred -CCCCHHHHHhh--hhEEEeccccc-ccChHHHHHHh--CCCCEEE
Confidence 11246666776 89999888643 47788999998 5889986
No 470
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=50.63 E-value=23 Score=38.16 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=26.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 56799999999999999988764 253 46777765
No 471
>PRK14852 hypothetical protein; Provisional
Probab=50.60 E-value=14 Score=44.14 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=33.9
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++|+..||+|+|+|..|..||+.|+.+ |+ ++|.++|-+=
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~ 366 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDA 366 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCE
Confidence 578999999999999999999998874 76 6999999873
No 472
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=50.55 E-value=16 Score=35.87 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=24.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCccc
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~ 379 (477)
+||+|+|+||.-+|..|.+. | ..++.++.+-+...
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCc
Confidence 78999999999999988642 2 24788887765443
No 473
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=50.55 E-value=1.9e+02 Score=33.25 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=27.8
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+.++|+.+|..++.. +.-.-+.....+-+|=|.+=.-||..
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~ 453 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVE 453 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccc
Confidence 445799999877754 55555544445556668888889874
No 474
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.39 E-value=20 Score=38.65 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.8
Q ss_pred CccceEEEeCcchHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
++++||+|+|.|-.|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 475
>PTZ00188 adrenodoxin reductase; Provisional
Probab=50.19 E-value=28 Score=38.82 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=26.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..||+|+|||.||+..|..++.. .|. ++-++|+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~ 72 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKL 72 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecC
Confidence 57999999999999999976542 243 47777765
No 476
>PRK06182 short chain dehydrogenase; Validated
Probab=50.14 E-value=32 Score=33.24 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=39.6
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh---chhhc-cccCCCCCHH
Q 011816 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWA-HEHEPVNNLL 404 (477)
Q Consensus 330 ~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~---k~~~a-~~~~~~~~L~ 404 (477)
+..+++|.|| |-.|..+|+.+.+ .|. ++++++++- +.+... ...+. -+..+..++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~-----~G~-------~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAA-----QGY-------TVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHH
Confidence 3568999997 4556666666543 353 677776631 112111 11111 1222223455
Q ss_pred HHhccc-----CCcEEEeccCCC
Q 011816 405 DAVKVI-----KPTILIGSSGVG 422 (477)
Q Consensus 405 eav~~v-----kptvLIG~S~~~ 422 (477)
++++.+ ++|++|=..+..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 566544 799999877653
No 477
>PRK08219 short chain dehydrogenase; Provisional
Probab=50.06 E-value=60 Score=29.92 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=39.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchh-----hcc-ccCCCCCHH
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WAH-EHEPVNNLL 404 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~-----~a~-~~~~~~~L~ 404 (477)
.+++|.|| |..|..+++.|++. .++++++++. ..+....+. +-+ +..+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 47888887 56666666666431 3578887741 111111111 111 112224566
Q ss_pred HHhccc-CCcEEEeccCCC
Q 011816 405 DAVKVI-KPTILIGSSGVG 422 (477)
Q Consensus 405 eav~~v-kptvLIG~S~~~ 422 (477)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777654 689999887754
No 478
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=49.94 E-value=22 Score=39.89 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
...||+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999888753 53 477787663
No 479
>PRK09186 flagellin modification protein A; Provisional
Probab=49.86 E-value=16 Score=34.51 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=22.4
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 45788999998 4455556666643 353 56777653
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=49.83 E-value=18 Score=41.44 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=27.2
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+.++|+++|..++.. ++-.-+....++-+|=|.+=..||.
T Consensus 416 ~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~ 455 (715)
T PRK11730 416 QKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPV 455 (715)
T ss_pred hhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcc
Confidence 446799999877753 6544444444455566888889986
No 481
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=49.71 E-value=23 Score=37.51 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=27.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 45699999999999999988653 5 4889999853
No 482
>PLN02342 ornithine carbamoyltransferase
Probab=49.62 E-value=1.3e+02 Score=31.97 Aligned_cols=132 Identities=18% Similarity=0.244 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceecc-CCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcc
Q 011816 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 340 (477)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAG 340 (477)
+.+.+..+ .+| .++++ +--+ .+...+.+.+| .++||.|= |-..=-.=+|+=++.-.+..| +|++.||+++|-+
T Consensus 130 l~DTarvL-s~y-~D~Iv-iR~~-~~~~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~ 203 (348)
T PLN02342 130 TRDIARVL-SRY-NDIIM-ARVF-AHQDVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDG 203 (348)
T ss_pred HHHHHHHH-HHh-CCEEE-EeCC-ChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 33443333 445 44444 2223 23334444554 47899993 222233456777776666655 6999999999987
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-----cCCCCCHHHHhcccCCcEE
Q 011816 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----HEPVNNLLDAVKVIKPTIL 415 (477)
Q Consensus 341 sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-----~~~~~~L~eav~~vkptvL 415 (477)
. -+++-++.++.+ .|+ ++.++-.+|+.... .....++. -....++.|+|++ +||+
T Consensus 204 ~---nva~Sli~~~~~-~G~-------~v~~~~P~~~~~~~-------~~~~~a~~~g~~~~~~~~d~~eav~~--aDVv 263 (348)
T PLN02342 204 N---NIVHSWLLLAAV-LPF-------HFVCACPKGYEPDA-------KTVEKARAAGISKIEITNDPAEAVKG--ADVV 263 (348)
T ss_pred c---hhHHHHHHHHHH-cCC-------EEEEECCcccccCH-------HHHHHHHHhCCCcEEEEcCHHHHhCC--CCEE
Confidence 4 378887777665 575 68888887763321 11112221 1123689999998 9999
Q ss_pred Eecc
Q 011816 416 IGSS 419 (477)
Q Consensus 416 IG~S 419 (477)
.-.+
T Consensus 264 y~~~ 267 (348)
T PLN02342 264 YTDV 267 (348)
T ss_pred EECC
Confidence 9875
No 483
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.38 E-value=24 Score=37.15 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.2
Q ss_pred CccceEEEeCcchHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
++..+++|.|+|..|.++|+.+.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~ 26 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK 26 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH
Confidence 567899999999999999998875
No 484
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=49.03 E-value=28 Score=30.76 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=25.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999999988663 4 4688888765
No 485
>PTZ00367 squalene epoxidase; Provisional
Probab=48.96 E-value=46 Score=37.31 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHhCCCC---ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 323 KLIGGTL---AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 323 r~~g~~l---~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++..++. .+-+|+|+|||.||+..|..|.+ .|. ++.++++.
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar-----~G~-------~V~VlEr~ 65 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK-----QGR-------KVLMLERD 65 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHHh-----cCC-------EEEEEccc
Confidence 3445564 45689999999999999988765 353 56677764
No 486
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=48.80 E-value=16 Score=32.51 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=26.2
Q ss_pred CChhhhHHHHHHHHHHHHH---hcCCCeeeeeecCC
Q 011816 253 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDFA 285 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~---~fGp~~lIq~EDf~ 285 (477)
.+.++|+.|+|+|+..|.+ .||+...-+||-|-
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~v 62 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFV 62 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEE
Confidence 4568999999999998888 57776666777663
No 487
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=48.59 E-value=21 Score=42.60 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=27.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 457999999999999999998753 53 67788875
No 488
>PLN02985 squalene monooxygenase
Probab=48.59 E-value=25 Score=38.67 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=25.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+.+|+|+|||.||+..|-.|.+ .|. ++.++|+.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~-----~G~-------~V~vlEr~ 75 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK-----DGR-------RVHVIERD 75 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEECc
Confidence 34589999999999999988764 353 56777764
No 489
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=48.48 E-value=47 Score=31.01 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=54.6
Q ss_pred HHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-
Q 011816 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE- 396 (477)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~- 396 (477)
.+.++...+.-..+++++++|+|+.|..++++... .| .+++.+++.. .+.+ ..+...+..
T Consensus 122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~~----~~~~---~~~~~g~~~~ 182 (271)
T cd05188 122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRSD----EKLE---LAKELGADHV 182 (271)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCCH----HHHH---HHHHhCCcee
Confidence 34445555544568899999999877766655432 24 3677776641 1111 011110110
Q ss_pred -cCCCCCHHHHh---cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 397 -HEPVNNLLDAV---KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 397 -~~~~~~L~eav---~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
.....+..+.+ ..-..|++|-.++.. ...+..++.|. +.-.+.-++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~~l~---~~G~~v~~~~~~ 235 (271)
T cd05188 183 IDYKEEDLEEELRLTGGGGADVVIDAVGGP-ETLAQALRLLR---PGGRIVVVGGTS 235 (271)
T ss_pred ccCCcCCHHHHHHHhcCCCCCEEEECCCCH-HHHHHHHHhcc---cCCEEEEEccCC
Confidence 00111222222 233578998765532 35566777775 333444455443
No 490
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=48.44 E-value=23 Score=37.91 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.++|+|||+||+..|..+.+. | .++.++|.+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 4689999999999999887653 5 478899964
No 491
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=48.42 E-value=20 Score=32.85 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.6
Q ss_pred CCccceEEEeCcchHHHHHHHHHHH
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
.+++.+|+|+|+|..|+-+|..|..
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~ 188 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAK 188 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTT
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHh
Confidence 6778999999999999988877754
No 492
>PRK07208 hypothetical protein; Provisional
Probab=48.26 E-value=22 Score=37.59 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 011816 330 AEHRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~ 352 (477)
+..+|+|+|||-||+..|..|.+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~ 25 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLK 25 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHH
Confidence 34679999999999999988865
No 493
>PRK13748 putative mercuric reductase; Provisional
Probab=48.16 E-value=20 Score=38.98 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=27.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+-.+||+|||+||+..|..+.+. | .++.++|+.
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 56899999999999999988763 5 478899975
No 494
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=48.01 E-value=30 Score=35.51 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=28.1
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc--CCCCcEEEEcCCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMAS--FNEKPLILALSNPTS 450 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIFaLSNPt~ 450 (477)
+-|++||+|..| =|+++++.+.. ...-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG--~T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASG--RTPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCC--CcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 469999999977 48999988753 333477776677774
No 495
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=47.81 E-value=88 Score=31.65 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCeeeeeecCCc-----ccHHHHHHHHcCCCceeccCCCchH
Q 011816 264 EFMSAVKQNYGEKVLIQFEDFAN-----HNAFELLAKYGTTHLVFNDDIQGTA 311 (477)
Q Consensus 264 efv~av~~~fGp~~lIq~EDf~~-----~~af~iL~ryr~~~~~FnDDiQGTa 311 (477)
+.+++.-+.|.+..+|| |++. ++.++++.+|.-.+++.+.|.+|+.
T Consensus 80 ~v~eaaL~~~~G~~iIN--sIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P 130 (261)
T PRK07535 80 AAIEAGLKVAKGPPLIN--SVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIP 130 (261)
T ss_pred HHHHHHHHhCCCCCEEE--eCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 44555555454456666 5544 4568889999988888888878865
No 496
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=47.73 E-value=25 Score=37.61 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=26.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
++++||+|||-+|+..|-.|.++ |. ++.+++++..
T Consensus 1 ~~dvvIIGaG~~GL~aa~~La~~-----G~-------~v~vlE~~~~ 35 (492)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKR-----GY-------RVTLLEQHAQ 35 (492)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 46899999999999999988763 53 4666666533
No 497
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=47.62 E-value=27 Score=29.45 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=51.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
.||.|+|+|..|......+.... .+ .+=..++|++ .+......+.|-- +...++.+.++.-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~---~~------~~v~~v~d~~-------~~~~~~~~~~~~~--~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS---PD------FEVVAVCDPD-------PERAEAFAEKYGI--PVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT---TT------EEEEEEECSS-------HHHHHHHHHHTTS--EEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcC---CC------cEEEEEEeCC-------HHHHHHHHHHhcc--cchhHHHHHHHhhc
Confidence 38999999999777655554320 11 1223455653 1112222222221 23478999999878
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 412 PTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
+|+++ +++.. ....++++...+.. .+|+.
T Consensus 63 ~D~V~-I~tp~-~~h~~~~~~~l~~g-~~v~~ 91 (120)
T PF01408_consen 63 VDAVI-IATPP-SSHAEIAKKALEAG-KHVLV 91 (120)
T ss_dssp ESEEE-EESSG-GGHHHHHHHHHHTT-SEEEE
T ss_pred CCEEE-EecCC-cchHHHHHHHHHcC-CEEEE
Confidence 99988 45544 45666666665433 35543
No 498
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=47.56 E-value=2.4e+02 Score=28.83 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=17.6
Q ss_pred CCCccceEEEeCcchHHHHHHHHH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELI 350 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll 350 (477)
.--.+++++|.|+|+.|...+.+.
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a 203 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGC 203 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH
Confidence 334578999999998887766554
No 499
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=47.55 E-value=16 Score=43.74 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.3
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++|++.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 568889999999999999999999875 75 7999999874
No 500
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=47.51 E-value=1.2e+02 Score=30.30 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=52.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
.||.++|+ |-.|-.+++.+... .++ +=..++|++. .+.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99999988777542 122 3355677652 111111 111 1112367888876
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 444 (477)
++|++|=+|.+. ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 499999888643 336666665543 5778855
Done!