Query 011816
Match_columns 477
No_of_seqs 222 out of 1289
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:54:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gq2_A Malic enzyme; oxidoredu 100.0 1E-170 4E-175 1346.2 37.1 424 50-475 1-424 (555)
2 1pj3_A NAD-dependent malic enz 100.0 3E-170 1E-174 1346.2 35.6 425 50-475 3-429 (564)
3 1o0s_A NAD-ME, NAD-dependent m 100.0 9E-170 3E-174 1346.8 34.4 428 46-475 33-462 (605)
4 3nv9_A Malic enzyme; rossmann 100.0 2.2E-97 8E-102 774.9 22.1 288 128-476 55-353 (487)
5 2a9f_A Putative malic enzyme ( 100.0 1.5E-91 5.1E-96 722.1 15.9 286 121-476 23-315 (398)
6 1vl6_A Malate oxidoreductase; 100.0 4.1E-88 1.4E-92 695.2 15.7 286 121-476 27-320 (388)
7 2dvm_A Malic enzyme, 439AA lon 100.0 1.9E-63 6.6E-68 519.5 16.5 287 121-476 21-322 (439)
8 3gvp_A Adenosylhomocysteinase 99.1 1.5E-09 5E-14 113.7 15.7 168 253-459 112-318 (435)
9 3h9u_A Adenosylhomocysteinase; 99.0 4.2E-10 1.4E-14 117.9 9.8 129 298-460 171-310 (436)
10 1x13_A NAD(P) transhydrogenase 98.6 5.1E-08 1.7E-12 100.3 6.9 239 166-470 26-318 (401)
11 3ond_A Adenosylhomocysteinase; 98.2 4E-06 1.4E-10 89.1 10.1 132 298-462 225-366 (488)
12 3n58_A Adenosylhomocysteinase; 98.2 4.9E-06 1.7E-10 87.8 10.6 138 298-469 207-369 (464)
13 1l7d_A Nicotinamide nucleotide 97.7 0.00062 2.1E-08 69.1 15.6 225 167-448 20-296 (384)
14 4dio_A NAD(P) transhydrogenase 97.5 9.6E-05 3.3E-09 76.8 5.5 125 328-470 187-337 (405)
15 3p2y_A Alanine dehydrogenase/p 97.2 0.00036 1.2E-08 72.0 5.9 103 329-448 182-304 (381)
16 3d4o_A Dipicolinate synthase s 97.1 0.0031 1.1E-07 61.4 11.2 123 309-460 133-256 (293)
17 3r3j_A Glutamate dehydrogenase 97.0 0.032 1.1E-06 58.9 19.0 193 253-465 145-371 (456)
18 3k92_A NAD-GDH, NAD-specific g 96.9 0.015 5.2E-07 60.9 15.5 187 253-461 126-338 (424)
19 4fcc_A Glutamate dehydrogenase 96.9 0.054 1.8E-06 57.1 19.4 198 253-470 141-370 (450)
20 3aoe_E Glutamate dehydrogenase 96.9 0.018 6.3E-07 60.1 15.7 185 254-461 124-332 (419)
21 3aog_A Glutamate dehydrogenase 96.7 0.029 9.8E-07 59.0 15.3 185 254-461 141-353 (440)
22 3l07_A Bifunctional protein fo 96.4 0.0066 2.2E-07 60.5 8.2 107 311-461 141-252 (285)
23 1a4i_A Methylenetetrahydrofola 96.4 0.0055 1.9E-07 61.6 7.6 96 309-448 143-239 (301)
24 2bma_A Glutamate dehydrogenase 96.3 0.067 2.3E-06 56.7 15.5 188 254-461 159-381 (470)
25 3p2o_A Bifunctional protein fo 96.3 0.0099 3.4E-07 59.3 8.2 108 310-461 139-252 (285)
26 2yfq_A Padgh, NAD-GDH, NAD-spe 96.2 0.042 1.4E-06 57.4 13.1 186 254-461 117-335 (421)
27 2tmg_A Protein (glutamate dehy 96.2 0.15 5.2E-06 53.1 17.2 186 254-461 115-328 (415)
28 3ngx_A Bifunctional protein fo 96.2 0.0099 3.4E-07 59.0 7.7 107 309-461 130-241 (276)
29 3pwz_A Shikimate dehydrogenase 96.1 0.01 3.6E-07 58.0 7.5 159 262-449 44-219 (272)
30 3jyo_A Quinate/shikimate dehyd 96.1 0.012 4E-07 57.9 7.6 137 262-422 51-205 (283)
31 4a5o_A Bifunctional protein fo 96.0 0.014 4.8E-07 58.2 8.0 107 311-461 141-253 (286)
32 1b0a_A Protein (fold bifunctio 96.0 0.011 3.7E-07 59.1 7.1 109 309-461 137-251 (288)
33 1edz_A 5,10-methylenetetrahydr 96.0 0.01 3.4E-07 60.0 6.7 113 313-449 150-278 (320)
34 1v9l_A Glutamate dehydrogenase 95.9 0.086 2.9E-06 55.1 13.7 186 254-461 116-334 (421)
35 1c1d_A L-phenylalanine dehydro 95.9 0.031 1.1E-06 57.0 10.0 180 255-470 92-282 (355)
36 1v8b_A Adenosylhomocysteinase; 95.8 0.039 1.3E-06 58.5 10.9 123 306-461 235-357 (479)
37 4a26_A Putative C-1-tetrahydro 95.8 0.016 5.4E-07 58.2 7.4 110 308-461 142-265 (300)
38 3don_A Shikimate dehydrogenase 95.7 0.011 3.8E-07 58.1 5.5 111 315-449 101-214 (277)
39 1gpj_A Glutamyl-tRNA reductase 95.4 0.088 3E-06 53.7 11.3 102 328-449 164-269 (404)
40 2rir_A Dipicolinate synthase, 95.4 0.046 1.6E-06 53.2 8.7 121 322-472 148-269 (300)
41 2c2x_A Methylenetetrahydrofola 95.3 0.031 1.1E-06 55.6 7.3 99 309-449 136-235 (281)
42 3tnl_A Shikimate dehydrogenase 95.3 0.022 7.6E-07 57.0 6.3 91 315-422 138-237 (315)
43 3t4e_A Quinate/shikimate dehyd 95.2 0.024 8.4E-07 56.6 6.3 91 315-422 132-231 (312)
44 2v6b_A L-LDH, L-lactate dehydr 95.2 0.0048 1.6E-07 60.7 1.2 123 333-472 2-139 (304)
45 3d64_A Adenosylhomocysteinase; 95.0 0.044 1.5E-06 58.3 7.9 110 309-449 258-367 (494)
46 3oj0_A Glutr, glutamyl-tRNA re 94.9 0.011 3.6E-07 51.1 2.4 109 309-449 4-113 (144)
47 2egg_A AROE, shikimate 5-dehyd 94.9 0.024 8.1E-07 55.7 5.2 87 316-422 125-215 (297)
48 1bgv_A Glutamate dehydrogenase 94.9 0.84 2.9E-05 48.1 17.1 187 255-461 137-359 (449)
49 1leh_A Leucine dehydrogenase; 94.8 0.088 3E-06 53.8 9.2 169 259-461 93-274 (364)
50 3u62_A Shikimate dehydrogenase 94.7 0.037 1.3E-06 53.5 5.8 147 262-447 42-201 (253)
51 1pjc_A Protein (L-alanine dehy 94.7 0.044 1.5E-06 55.0 6.5 96 329-448 165-269 (361)
52 2o4c_A Erythronate-4-phosphate 94.7 0.34 1.2E-05 49.8 13.2 117 299-447 81-208 (380)
53 1mld_A Malate dehydrogenase; o 94.6 0.073 2.5E-06 52.7 7.9 101 333-449 2-120 (314)
54 3u95_A Glycoside hydrolase, fa 94.6 0.047 1.6E-06 57.5 6.8 38 427-467 140-177 (477)
55 2ewd_A Lactate dehydrogenase,; 94.3 0.092 3.1E-06 51.5 7.7 98 332-450 5-125 (317)
56 2hk9_A Shikimate dehydrogenase 94.2 0.1 3.5E-06 50.2 7.7 108 315-447 113-222 (275)
57 1hyh_A L-hicdh, L-2-hydroxyiso 94.2 0.051 1.8E-06 53.0 5.6 102 332-450 2-126 (309)
58 3ce6_A Adenosylhomocysteinase; 94.1 0.36 1.2E-05 51.3 12.3 107 323-460 266-373 (494)
59 1pzg_A LDH, lactate dehydrogen 94.0 0.067 2.3E-06 53.4 6.2 120 332-472 10-157 (331)
60 1oju_A MDH, malate dehydrogena 94.0 0.027 9.2E-07 55.7 3.2 124 333-472 2-143 (294)
61 1ldn_A L-lactate dehydrogenase 94.0 0.074 2.5E-06 52.6 6.3 125 332-472 7-148 (316)
62 3dtt_A NADP oxidoreductase; st 93.9 0.13 4.3E-06 48.5 7.6 109 325-449 13-127 (245)
63 2ekl_A D-3-phosphoglycerate de 93.9 0.54 1.8E-05 46.5 12.3 121 298-447 90-233 (313)
64 2eez_A Alanine dehydrogenase; 93.8 0.1 3.4E-06 52.5 7.0 97 329-449 164-269 (369)
65 2g1u_A Hypothetical protein TM 93.7 0.11 3.7E-06 45.2 6.3 103 327-448 15-120 (155)
66 3oet_A Erythronate-4-phosphate 93.7 0.41 1.4E-05 49.3 11.4 118 298-447 83-211 (381)
67 3tri_A Pyrroline-5-carboxylate 93.7 0.12 4.1E-06 50.0 7.0 97 331-449 3-101 (280)
68 1o6z_A MDH, malate dehydrogena 93.6 0.056 1.9E-06 53.1 4.8 123 332-472 1-144 (303)
69 3o8q_A Shikimate 5-dehydrogena 93.6 0.1 3.5E-06 51.2 6.5 158 262-449 50-225 (281)
70 3fbt_A Chorismate mutase and s 93.6 0.095 3.2E-06 51.7 6.3 104 316-449 107-218 (282)
71 2i6t_A Ubiquitin-conjugating e 93.5 0.13 4.6E-06 50.8 7.3 120 332-472 15-150 (303)
72 2hjr_A Malate dehydrogenase; m 93.5 0.055 1.9E-06 53.9 4.4 119 332-472 15-156 (328)
73 1b8p_A Protein (malate dehydro 93.4 0.068 2.3E-06 53.0 4.9 123 331-463 5-147 (329)
74 3mw9_A GDH 1, glutamate dehydr 93.3 0.68 2.3E-05 49.5 12.5 188 253-461 136-361 (501)
75 2gcg_A Glyoxylate reductase/hy 93.2 0.69 2.3E-05 45.9 11.9 66 298-375 98-187 (330)
76 1u8x_X Maltose-6'-phosphate gl 93.1 0.034 1.2E-06 58.6 2.4 126 331-472 28-194 (472)
77 3d0o_A L-LDH 1, L-lactate dehy 93.1 0.061 2.1E-06 53.3 4.1 128 329-472 4-148 (317)
78 3fef_A Putative glucosidase LP 93.1 0.076 2.6E-06 55.8 5.0 126 329-472 3-169 (450)
79 2d5c_A AROE, shikimate 5-dehyd 93.1 0.15 5E-06 48.5 6.5 104 316-447 102-207 (263)
80 1gtm_A Glutamate dehydrogenase 93.1 0.87 3E-05 47.3 12.8 178 254-449 115-322 (419)
81 2zqz_A L-LDH, L-lactate dehydr 93.0 0.07 2.4E-06 53.3 4.4 126 331-472 9-150 (326)
82 1s6y_A 6-phospho-beta-glucosid 92.9 0.029 1E-06 58.7 1.5 127 332-472 8-175 (450)
83 3tum_A Shikimate dehydrogenase 92.8 0.18 6E-06 49.4 6.8 115 316-456 110-232 (269)
84 1ez4_A Lactate dehydrogenase; 92.8 0.086 3E-06 52.4 4.7 125 332-472 6-146 (318)
85 2dbq_A Glyoxylate reductase; D 92.8 1.3 4.3E-05 44.1 13.1 120 298-446 89-240 (334)
86 1obb_A Maltase, alpha-glucosid 92.7 0.091 3.1E-06 55.6 5.0 125 331-473 3-175 (480)
87 1t2d_A LDH-P, L-lactate dehydr 92.7 0.089 3E-06 52.3 4.6 119 332-472 5-151 (322)
88 2rcy_A Pyrroline carboxylate r 92.7 0.56 1.9E-05 43.7 9.8 92 331-450 4-95 (262)
89 2hmt_A YUAA protein; RCK, KTN, 92.6 0.053 1.8E-06 45.1 2.4 103 329-449 4-108 (144)
90 1y6j_A L-lactate dehydrogenase 92.3 0.14 4.6E-06 50.9 5.4 120 332-472 8-148 (318)
91 1zud_1 Adenylyltransferase THI 92.3 0.14 4.7E-06 49.1 5.2 103 328-445 25-150 (251)
92 1a5z_A L-lactate dehydrogenase 92.2 0.11 3.7E-06 51.3 4.5 98 333-450 2-120 (319)
93 3vku_A L-LDH, L-lactate dehydr 92.1 0.14 4.6E-06 51.6 5.0 126 331-472 9-150 (326)
94 3kkj_A Amine oxidase, flavin-c 92.1 0.13 4.5E-06 43.9 4.3 31 333-375 4-34 (336)
95 3hdj_A Probable ornithine cycl 92.0 0.58 2E-05 46.5 9.4 111 318-459 110-227 (313)
96 2vhw_A Alanine dehydrogenase; 91.9 0.15 5.3E-06 51.5 5.2 96 328-447 165-269 (377)
97 1nyt_A Shikimate 5-dehydrogena 91.8 0.29 1E-05 46.9 6.9 49 315-375 103-151 (271)
98 4g2n_A D-isomer specific 2-hyd 91.7 1.2 4E-05 45.1 11.5 122 298-448 116-265 (345)
99 1smk_A Malate dehydrogenase, g 91.7 0.27 9.1E-06 48.9 6.6 104 332-449 9-128 (326)
100 1up7_A 6-phospho-beta-glucosid 91.6 0.14 4.6E-06 53.2 4.6 124 332-472 3-164 (417)
101 1p77_A Shikimate 5-dehydrogena 91.5 0.22 7.5E-06 47.9 5.7 106 315-446 103-214 (272)
102 2raf_A Putative dinucleotide-b 91.5 0.49 1.7E-05 43.5 7.8 37 327-375 15-51 (209)
103 1guz_A Malate dehydrogenase; o 91.5 0.39 1.3E-05 47.1 7.5 100 333-449 2-121 (310)
104 4huj_A Uncharacterized protein 91.5 0.24 8.2E-06 45.8 5.7 93 332-450 24-117 (220)
105 3ba1_A HPPR, hydroxyphenylpyru 91.4 0.98 3.4E-05 45.2 10.5 107 310-448 124-253 (333)
106 1wwk_A Phosphoglycerate dehydr 91.4 1 3.5E-05 44.4 10.5 109 310-447 103-233 (307)
107 1xdw_A NAD+-dependent (R)-2-hy 91.4 1.8 6.2E-05 43.0 12.3 119 298-447 91-235 (331)
108 1x7d_A Ornithine cyclodeaminas 91.3 0.29 1E-05 49.3 6.6 115 316-458 116-239 (350)
109 2xxj_A L-LDH, L-lactate dehydr 91.3 0.085 2.9E-06 52.2 2.6 121 332-472 1-141 (310)
110 1txg_A Glycerol-3-phosphate de 91.3 0.55 1.9E-05 45.2 8.2 94 333-449 2-107 (335)
111 3k5p_A D-3-phosphoglycerate de 91.2 3.1 0.00011 43.3 14.3 122 297-449 101-247 (416)
112 3p7m_A Malate dehydrogenase; p 91.2 0.12 4.1E-06 51.6 3.6 123 329-472 3-147 (321)
113 1lu9_A Methylene tetrahydromet 91.2 1.1 3.8E-05 42.9 10.2 119 281-422 64-199 (287)
114 3d1l_A Putative NADP oxidoredu 91.1 0.19 6.5E-06 47.2 4.7 99 327-449 6-105 (266)
115 1lld_A L-lactate dehydrogenase 91.1 0.14 4.7E-06 49.6 3.7 105 331-450 7-128 (319)
116 3gvi_A Malate dehydrogenase; N 91.1 0.16 5.4E-06 50.9 4.3 126 329-472 5-149 (324)
117 1ur5_A Malate dehydrogenase; o 91.0 0.15 5E-06 50.3 4.0 119 332-472 3-144 (309)
118 1z82_A Glycerol-3-phosphate de 90.8 0.3 1E-05 47.8 5.9 95 331-451 14-116 (335)
119 2cuk_A Glycerate dehydrogenase 90.8 1.8 6E-05 42.8 11.5 116 298-447 87-230 (311)
120 2i99_A MU-crystallin homolog; 90.7 0.57 2E-05 46.0 7.8 113 316-456 122-237 (312)
121 3jtm_A Formate dehydrogenase, 90.6 1.6 5.5E-05 44.1 11.2 125 298-449 108-259 (351)
122 3nep_X Malate dehydrogenase; h 90.6 0.15 5.1E-06 50.9 3.6 124 333-472 2-143 (314)
123 2zyd_A 6-phosphogluconate dehy 90.6 0.56 1.9E-05 49.1 8.1 102 328-449 12-116 (480)
124 1qp8_A Formate dehydrogenase; 90.6 2.6 8.9E-05 41.5 12.4 67 298-376 71-157 (303)
125 3h5n_A MCCB protein; ubiquitin 90.5 0.51 1.7E-05 47.6 7.4 102 327-444 114-240 (353)
126 1nvt_A Shikimate 5'-dehydrogen 90.4 0.23 8E-06 47.9 4.7 182 212-449 32-234 (287)
127 4dgs_A Dehydrogenase; structur 90.4 1.5 5E-05 44.3 10.6 119 310-460 130-272 (340)
128 3phh_A Shikimate dehydrogenase 90.3 0.81 2.8E-05 44.8 8.5 100 316-448 107-212 (269)
129 3tl2_A Malate dehydrogenase; c 89.9 0.2 6.9E-06 49.9 3.9 127 329-472 6-152 (315)
130 3pqe_A L-LDH, L-lactate dehydr 89.9 0.17 5.8E-06 50.7 3.3 126 331-472 5-147 (326)
131 1x0v_A GPD-C, GPDH-C, glycerol 89.8 0.7 2.4E-05 45.1 7.6 109 331-450 8-128 (354)
132 4hy3_A Phosphoglycerate oxidor 89.7 1.1 3.7E-05 45.8 9.1 110 309-447 133-267 (365)
133 1sc6_A PGDH, D-3-phosphoglycer 89.7 4.3 0.00015 41.8 13.6 67 297-375 90-177 (404)
134 2d0i_A Dehydrogenase; structur 89.6 2.1 7.1E-05 42.6 10.9 90 327-446 142-235 (333)
135 2d4a_B Malate dehydrogenase; a 89.6 0.2 6.8E-06 49.5 3.5 116 333-472 1-141 (308)
136 3ldh_A Lactate dehydrogenase; 89.5 0.072 2.5E-06 53.8 0.3 125 331-472 21-163 (330)
137 1dxy_A D-2-hydroxyisocaproate 89.5 3.1 0.00011 41.4 12.2 120 298-448 90-235 (333)
138 1omo_A Alanine dehydrogenase; 89.5 1.1 3.9E-05 44.2 8.8 113 316-458 112-230 (322)
139 3k96_A Glycerol-3-phosphate de 89.4 0.73 2.5E-05 46.3 7.6 102 331-450 29-137 (356)
140 1hyu_A AHPF, alkyl hydroperoxi 89.4 0.28 9.7E-06 51.2 4.7 100 261-375 134-244 (521)
141 3i83_A 2-dehydropantoate 2-red 89.4 0.59 2E-05 45.5 6.7 98 332-450 3-109 (320)
142 3h8v_A Ubiquitin-like modifier 89.3 0.4 1.4E-05 47.6 5.4 39 327-376 32-70 (292)
143 1j4a_A D-LDH, D-lactate dehydr 89.1 3.9 0.00013 40.7 12.5 121 297-447 91-236 (333)
144 2j6i_A Formate dehydrogenase; 88.9 1.6 5.3E-05 44.2 9.6 86 279-375 88-197 (364)
145 1hye_A L-lactate/malate dehydr 88.9 0.49 1.7E-05 46.5 5.8 122 333-472 2-147 (313)
146 3hg7_A D-isomer specific 2-hyd 88.9 0.95 3.2E-05 45.4 7.9 66 299-376 89-173 (324)
147 3evt_A Phosphoglycerate dehydr 88.9 1.3 4.4E-05 44.3 8.8 66 298-375 83-169 (324)
148 2yq5_A D-isomer specific 2-hyd 88.8 4.3 0.00015 40.9 12.7 118 299-447 93-237 (343)
149 4e21_A 6-phosphogluconate dehy 88.7 1.5 5E-05 44.3 9.2 96 329-449 20-118 (358)
150 3rui_A Ubiquitin-like modifier 88.5 0.28 9.6E-06 49.9 3.7 38 328-376 31-68 (340)
151 3gvx_A Glycerate dehydrogenase 88.3 3 0.0001 41.1 10.9 54 310-375 85-154 (290)
152 2w2k_A D-mandelate dehydrogena 88.3 3.6 0.00012 41.1 11.7 39 326-375 158-196 (348)
153 1yj8_A Glycerol-3-phosphate de 88.3 0.6 2.1E-05 46.4 6.0 108 332-450 22-145 (375)
154 2x0j_A Malate dehydrogenase; o 88.2 0.53 1.8E-05 46.7 5.4 116 332-463 1-132 (294)
155 1hdo_A Biliverdin IX beta redu 88.0 1.6 5.4E-05 38.0 7.9 98 331-446 3-111 (206)
156 1ks9_A KPA reductase;, 2-dehyd 87.9 0.96 3.3E-05 42.3 6.8 95 333-449 2-100 (291)
157 2pi1_A D-lactate dehydrogenase 87.8 3 0.0001 41.7 10.8 121 299-449 87-233 (334)
158 1jw9_B Molybdopterin biosynthe 87.5 0.39 1.3E-05 45.8 3.9 103 328-445 28-153 (249)
159 4e12_A Diketoreductase; oxidor 87.4 0.19 6.4E-06 48.3 1.6 32 332-375 5-36 (283)
160 1y7t_A Malate dehydrogenase; N 87.4 0.38 1.3E-05 47.1 3.8 110 332-449 5-133 (327)
161 3b1f_A Putative prephenate deh 87.4 1.1 3.6E-05 42.6 6.8 35 331-375 6-40 (290)
162 1npy_A Hypothetical shikimate 87.4 0.7 2.4E-05 44.9 5.7 48 316-375 105-152 (271)
163 2p4q_A 6-phosphogluconate dehy 87.3 1.5 5.3E-05 46.1 8.6 98 332-449 11-112 (497)
164 4ej6_A Putative zinc-binding d 87.2 5.7 0.00019 39.4 12.3 137 305-471 158-309 (370)
165 1gdh_A D-glycerate dehydrogena 87.0 3 0.0001 41.2 10.1 65 298-374 89-177 (320)
166 1lss_A TRK system potassium up 87.0 0.64 2.2E-05 38.3 4.5 97 331-449 4-106 (140)
167 2izz_A Pyrroline-5-carboxylate 86.6 2.3 7.8E-05 41.5 8.9 100 330-450 21-122 (322)
168 2ew2_A 2-dehydropantoate 2-red 86.5 0.44 1.5E-05 45.0 3.6 97 332-449 4-111 (316)
169 2vns_A Metalloreductase steap3 86.5 0.63 2.1E-05 42.9 4.6 37 327-375 24-60 (215)
170 4aj2_A L-lactate dehydrogenase 86.5 0.31 1.1E-05 49.1 2.6 128 328-472 16-161 (331)
171 3c24_A Putative oxidoreductase 86.4 1.2 4.3E-05 42.3 6.7 91 332-449 12-104 (286)
172 3ado_A Lambda-crystallin; L-gu 86.4 0.82 2.8E-05 45.8 5.7 32 331-374 6-37 (319)
173 4fgw_A Glycerol-3-phosphate de 86.3 0.97 3.3E-05 46.6 6.3 96 332-436 35-140 (391)
174 3c85_A Putative glutathione-re 86.2 0.24 8.1E-06 43.9 1.5 101 329-447 37-140 (183)
175 1jay_A Coenzyme F420H2:NADP+ o 86.2 0.32 1.1E-05 43.8 2.4 94 333-450 2-101 (212)
176 2nac_A NAD-dependent formate d 86.2 3 0.0001 42.9 9.9 38 326-375 186-223 (393)
177 2g76_A 3-PGDH, D-3-phosphoglyc 86.1 3.3 0.00011 41.5 10.0 119 299-447 112-256 (335)
178 3pp8_A Glyoxylate/hydroxypyruv 86.0 1.4 4.7E-05 43.9 7.1 66 298-375 86-171 (315)
179 3ip1_A Alcohol dehydrogenase, 85.9 4.6 0.00016 40.4 10.9 128 319-471 201-341 (404)
180 3fi9_A Malate dehydrogenase; s 85.7 0.36 1.2E-05 48.8 2.7 118 329-463 6-140 (343)
181 3gg9_A D-3-phosphoglycerate de 85.7 3.2 0.00011 41.9 9.7 94 326-447 155-252 (352)
182 2qrj_A Saccharopine dehydrogen 85.6 2.7 9.3E-05 43.5 9.2 82 331-446 214-300 (394)
183 3gt0_A Pyrroline-5-carboxylate 85.0 1.4 4.7E-05 41.1 6.2 36 332-375 3-38 (247)
184 1bg6_A N-(1-D-carboxylethyl)-L 84.9 2.6 8.9E-05 40.7 8.3 93 332-447 5-110 (359)
185 4dll_A 2-hydroxy-3-oxopropiona 84.7 1.4 4.9E-05 42.9 6.4 35 329-375 29-63 (320)
186 3vrd_B FCCB subunit, flavocyto 84.7 1.1 3.6E-05 44.2 5.5 35 331-375 2-36 (401)
187 2d8a_A PH0655, probable L-thre 84.7 2 7E-05 41.9 7.5 132 314-471 153-291 (348)
188 1pgj_A 6PGDH, 6-PGDH, 6-phosph 84.7 1.6 5.5E-05 45.5 7.1 97 333-449 3-106 (478)
189 4ezb_A Uncharacterized conserv 84.6 1.3 4.6E-05 43.3 6.1 33 332-375 25-57 (317)
190 2uyy_A N-PAC protein; long-cha 84.5 1.3 4.4E-05 42.6 5.9 92 332-448 31-126 (316)
191 2dq4_A L-threonine 3-dehydroge 84.5 1.2 4.1E-05 43.4 5.8 131 314-471 149-286 (343)
192 2iz1_A 6-phosphogluconate dehy 84.4 2.3 7.9E-05 44.2 8.1 99 331-449 5-106 (474)
193 3ggo_A Prephenate dehydrogenas 84.3 2.9 9.8E-05 41.1 8.4 35 331-375 33-67 (314)
194 3e8x_A Putative NAD-dependent 84.2 1.8 6E-05 39.3 6.4 101 327-447 17-132 (236)
195 3abi_A Putative uncharacterize 84.2 0.66 2.2E-05 46.2 3.8 108 332-468 17-128 (365)
196 2h78_A Hibadh, 3-hydroxyisobut 84.2 0.85 2.9E-05 43.6 4.4 91 332-448 4-99 (302)
197 3pef_A 6-phosphogluconate dehy 84.1 1.3 4.3E-05 42.3 5.5 91 332-447 2-96 (287)
198 1y8q_A Ubiquitin-like 1 activa 84.0 0.78 2.7E-05 46.1 4.3 38 327-375 32-69 (346)
199 4egb_A DTDP-glucose 4,6-dehydr 84.0 2.8 9.6E-05 40.0 8.0 106 329-446 22-149 (346)
200 4hb9_A Similarities with proba 83.9 0.91 3.1E-05 43.8 4.6 32 332-375 2-33 (412)
201 3l6d_A Putative oxidoreductase 83.9 1.2 4.3E-05 43.1 5.5 36 328-375 6-41 (306)
202 1id1_A Putative potassium chan 83.8 0.81 2.8E-05 39.4 3.7 34 330-375 2-35 (153)
203 4e5n_A Thermostable phosphite 83.8 3.6 0.00012 41.0 8.9 122 298-447 89-237 (330)
204 2g5c_A Prephenate dehydrogenas 83.7 2.6 9E-05 39.7 7.6 34 332-375 2-35 (281)
205 3qsg_A NAD-binding phosphogluc 83.5 4.6 0.00016 39.2 9.5 34 331-375 24-57 (312)
206 4gsl_A Ubiquitin-like modifier 83.4 0.68 2.3E-05 50.6 3.7 38 328-376 323-360 (615)
207 1yb4_A Tartronic semialdehyde 83.3 1.8 6.1E-05 40.9 6.2 21 332-352 4-24 (295)
208 1mx3_A CTBP1, C-terminal bindi 83.3 5.6 0.00019 40.0 10.2 122 298-447 107-260 (347)
209 3vh1_A Ubiquitin-like modifier 83.3 0.59 2E-05 50.9 3.2 38 327-375 323-360 (598)
210 5mdh_A Malate dehydrogenase; o 83.0 0.41 1.4E-05 48.1 1.7 130 332-472 4-154 (333)
211 3doj_A AT3G25530, dehydrogenas 83.0 2.2 7.4E-05 41.4 6.8 36 328-375 18-53 (310)
212 3gpi_A NAD-dependent epimerase 82.9 1.2 4E-05 41.7 4.7 96 330-446 2-109 (286)
213 4gwg_A 6-phosphogluconate dehy 82.7 2.6 9E-05 44.5 7.8 99 331-449 4-106 (484)
214 2ph5_A Homospermidine synthase 82.7 4.9 0.00017 42.7 9.8 98 331-447 13-115 (480)
215 4a9w_A Monooxygenase; baeyer-v 82.2 1 3.5E-05 42.4 4.1 35 330-376 2-36 (357)
216 3hhp_A Malate dehydrogenase; M 82.1 1.3 4.6E-05 44.0 5.1 123 333-472 2-147 (312)
217 3pdu_A 3-hydroxyisobutyrate de 82.0 1.6 5.5E-05 41.5 5.4 32 332-375 2-33 (287)
218 1yqd_A Sinapyl alcohol dehydro 82.0 3.1 0.00011 41.1 7.6 130 314-470 171-304 (366)
219 3r6d_A NAD-dependent epimerase 81.9 1.2 4.1E-05 40.0 4.2 96 332-446 6-108 (221)
220 2f1k_A Prephenate dehydrogenas 81.5 3.1 0.00011 39.0 7.1 31 333-375 2-32 (279)
221 3cky_A 2-hydroxymethyl glutara 81.4 1.2 3.9E-05 42.4 4.1 92 332-449 5-101 (301)
222 3d1c_A Flavin-containing putat 81.0 1.3 4.5E-05 42.4 4.4 36 330-376 3-38 (369)
223 4ina_A Saccharopine dehydrogen 80.8 1.4 4.9E-05 44.7 4.9 96 332-447 2-108 (405)
224 3oz2_A Digeranylgeranylglycero 80.7 1.3 4.5E-05 42.2 4.3 31 333-375 6-36 (397)
225 2pgd_A 6-phosphogluconate dehy 80.6 3.3 0.00011 43.1 7.6 98 332-449 3-104 (482)
226 3fbs_A Oxidoreductase; structu 80.5 1.5 5E-05 40.4 4.4 32 332-375 3-34 (297)
227 3k6j_A Protein F01G10.3, confi 80.2 2.1 7.3E-05 45.0 6.0 32 332-375 55-86 (460)
228 2pv7_A T-protein [includes: ch 80.1 4.7 0.00016 38.8 8.0 32 332-375 22-54 (298)
229 3alj_A 2-methyl-3-hydroxypyrid 79.9 1.6 5.6E-05 42.6 4.7 38 328-377 8-45 (379)
230 3dhn_A NAD-dependent epimerase 79.8 2.6 9E-05 37.6 5.7 96 332-446 5-112 (227)
231 3f8d_A Thioredoxin reductase ( 79.7 1.6 5.5E-05 40.5 4.4 33 331-375 15-47 (323)
232 3lzw_A Ferredoxin--NADP reduct 79.6 1.6 5.6E-05 40.8 4.5 34 331-376 7-40 (332)
233 3fwz_A Inner membrane protein 79.6 0.77 2.6E-05 39.2 2.0 32 332-375 8-39 (140)
234 2pzm_A Putative nucleotide sug 79.5 4 0.00014 39.0 7.2 103 327-446 16-136 (330)
235 2zbw_A Thioredoxin reductase; 79.5 1.6 5.3E-05 41.4 4.3 34 331-376 5-38 (335)
236 3pid_A UDP-glucose 6-dehydroge 79.3 7.8 0.00027 40.3 9.9 40 323-375 28-67 (432)
237 3qha_A Putative oxidoreductase 78.9 2.7 9.1E-05 40.5 5.8 91 331-447 15-106 (296)
238 1i36_A Conserved hypothetical 78.8 4.1 0.00014 37.9 6.9 20 333-352 2-21 (264)
239 3hn2_A 2-dehydropantoate 2-red 78.8 2.5 8.5E-05 40.9 5.6 101 332-450 3-107 (312)
240 4id9_A Short-chain dehydrogena 78.8 4.5 0.00015 38.5 7.3 96 327-446 15-126 (347)
241 3kb6_A D-lactate dehydrogenase 78.7 11 0.00036 37.7 10.3 92 326-447 136-231 (334)
242 1vpd_A Tartronate semialdehyde 78.6 1.3 4.6E-05 41.9 3.6 32 332-375 6-37 (299)
243 2dpo_A L-gulonate 3-dehydrogen 78.2 0.73 2.5E-05 45.8 1.6 33 331-375 6-38 (319)
244 3itj_A Thioredoxin reductase 1 78.1 1.5 5E-05 41.2 3.7 33 331-375 22-54 (338)
245 1tt5_B Ubiquitin-activating en 77.8 1.4 4.7E-05 46.0 3.6 38 327-375 36-73 (434)
246 3klj_A NAD(FAD)-dependent dehy 77.6 2 6.7E-05 43.1 4.6 37 330-378 8-44 (385)
247 3fg2_P Putative rubredoxin red 77.6 2 6.9E-05 42.7 4.7 35 332-376 2-36 (404)
248 3cgv_A Geranylgeranyl reductas 77.4 1.7 5.9E-05 41.9 4.0 35 330-376 3-37 (397)
249 3rp8_A Flavoprotein monooxygen 77.4 2.1 7.2E-05 42.1 4.7 36 329-376 21-56 (407)
250 3slg_A PBGP3 protein; structur 77.3 9 0.00031 36.9 9.1 101 328-446 21-141 (372)
251 2q7v_A Thioredoxin reductase; 77.3 1.9 6.3E-05 40.9 4.1 33 331-375 8-40 (325)
252 3l4b_C TRKA K+ channel protien 77.2 0.91 3.1E-05 41.4 1.9 93 333-448 2-101 (218)
253 3ef6_A Toluene 1,2-dioxygenase 77.1 3.5 0.00012 41.2 6.2 37 332-378 3-39 (410)
254 2vou_A 2,6-dihydroxypyridine h 77.1 2.4 8.4E-05 41.7 5.1 35 330-376 4-38 (397)
255 2jae_A L-amino acid oxidase; o 77.0 1.9 6.4E-05 43.6 4.3 41 325-377 5-45 (489)
256 2xdo_A TETX2 protein; tetracyc 76.8 2.1 7.1E-05 42.2 4.5 36 329-376 24-59 (398)
257 2yjz_A Metalloreductase steap4 78.5 0.5 1.7E-05 43.6 0.0 25 329-353 17-41 (201)
258 3dme_A Conserved exported prot 76.6 2.3 8E-05 40.2 4.6 33 331-375 4-36 (369)
259 3uko_A Alcohol dehydrogenase c 76.4 3.6 0.00012 40.7 6.1 84 327-434 190-285 (378)
260 3ab1_A Ferredoxin--NADP reduct 76.3 2.4 8.1E-05 40.8 4.6 34 331-376 14-47 (360)
261 2x3n_A Probable FAD-dependent 76.3 2.2 7.4E-05 41.8 4.4 35 331-377 6-40 (399)
262 1ryi_A Glycine oxidase; flavop 76.3 2.3 8E-05 40.9 4.6 35 331-377 17-51 (382)
263 3cty_A Thioredoxin reductase; 76.2 2.2 7.7E-05 40.2 4.3 33 331-375 16-48 (319)
264 1y8q_B Anthracycline-, ubiquit 76.0 1.7 5.7E-05 47.8 3.8 37 328-375 14-50 (640)
265 3hyw_A Sulfide-quinone reducta 76.0 2 6.9E-05 43.3 4.2 34 332-375 3-36 (430)
266 3r9u_A Thioredoxin reductase; 76.0 2.4 8.1E-05 39.3 4.4 33 331-375 4-37 (315)
267 3g0o_A 3-hydroxyisobutyrate de 75.8 2.2 7.5E-05 41.1 4.2 33 331-375 7-39 (303)
268 3i6i_A Putative leucoanthocyan 75.8 1.2 4E-05 43.1 2.3 101 328-443 7-117 (346)
269 3nix_A Flavoprotein/dehydrogen 75.7 3.2 0.00011 40.7 5.4 35 331-377 5-39 (421)
270 2bka_A CC3, TAT-interacting pr 75.7 8.5 0.00029 34.6 7.9 102 329-446 16-132 (242)
271 1yvv_A Amine oxidase, flavin-c 75.5 2.4 8.3E-05 39.9 4.4 33 332-376 3-35 (336)
272 3lxd_A FAD-dependent pyridine 75.5 2.4 8.1E-05 42.2 4.5 38 330-377 8-45 (415)
273 2q1w_A Putative nucleotide sug 75.2 8.3 0.00028 36.8 8.1 104 328-446 18-137 (333)
274 2ywl_A Thioredoxin reductase r 75.1 2.8 9.7E-05 36.3 4.4 32 332-375 2-33 (180)
275 2z2v_A Hypothetical protein PH 75.1 1.4 4.6E-05 44.5 2.6 91 331-447 16-109 (365)
276 4b4u_A Bifunctional protein fo 74.9 7.7 0.00026 39.0 8.0 96 310-449 158-255 (303)
277 1y56_B Sarcosine oxidase; dehy 74.8 2.5 8.7E-05 40.8 4.4 34 331-376 5-38 (382)
278 2gag_B Heterotetrameric sarcos 74.8 3 0.0001 40.4 4.9 35 331-376 21-56 (405)
279 3h8l_A NADH oxidase; membrane 74.5 2.7 9.3E-05 41.5 4.6 36 332-376 2-37 (409)
280 1ygy_A PGDH, D-3-phosphoglycer 74.4 8.8 0.0003 40.5 8.8 66 298-375 88-174 (529)
281 2z1m_A GDP-D-mannose dehydrata 74.3 6.5 0.00022 37.0 7.0 101 330-446 2-127 (345)
282 3k7m_X 6-hydroxy-L-nicotine ox 74.3 2.9 0.0001 41.1 4.8 32 333-376 3-34 (431)
283 1trb_A Thioredoxin reductase; 74.0 1.9 6.4E-05 40.4 3.1 34 330-375 4-37 (320)
284 1k0i_A P-hydroxybenzoate hydro 74.0 3.1 0.00011 40.5 4.8 33 332-376 3-35 (394)
285 3axb_A Putative oxidoreductase 73.9 3.1 0.0001 41.5 4.9 37 327-374 19-55 (448)
286 3m2p_A UDP-N-acetylglucosamine 73.9 9.1 0.00031 36.0 7.9 93 332-446 3-109 (311)
287 3c96_A Flavin-containing monoo 73.8 2.8 9.6E-05 41.4 4.5 35 331-376 4-38 (410)
288 2gf3_A MSOX, monomeric sarcosi 73.7 2.9 0.0001 40.3 4.5 36 331-378 3-38 (389)
289 2uzz_A N-methyl-L-tryptophan o 73.3 2.9 9.9E-05 40.1 4.4 35 332-378 3-37 (372)
290 2cvz_A Dehydrogenase, 3-hydrox 73.3 3.4 0.00012 38.7 4.7 29 333-374 3-31 (289)
291 2vdc_G Glutamate synthase [NAD 72.9 3.4 0.00012 42.6 5.0 35 330-376 121-155 (456)
292 1zk7_A HGII, reductase, mercur 72.6 3.3 0.00011 42.0 4.8 33 331-375 4-36 (467)
293 2xve_A Flavin-containing monoo 72.5 3 0.0001 42.6 4.5 39 332-376 3-41 (464)
294 1vdc_A NTR, NADPH dependent th 72.5 2.6 8.8E-05 39.8 3.7 33 330-374 7-39 (333)
295 2oln_A NIKD protein; flavoprot 72.4 3.2 0.00011 40.5 4.5 36 331-378 4-39 (397)
296 3i3l_A Alkylhalidase CMLS; fla 72.4 4.7 0.00016 43.1 6.1 37 329-377 21-57 (591)
297 4b8w_A GDP-L-fucose synthase; 72.3 5.8 0.0002 36.5 6.0 92 328-446 3-113 (319)
298 3iwa_A FAD-dependent pyridine 72.3 3.2 0.00011 42.1 4.6 37 331-377 3-39 (472)
299 3llv_A Exopolyphosphatase-rela 72.1 3.6 0.00012 34.4 4.2 34 330-375 5-38 (141)
300 3grf_A Ornithine carbamoyltran 72.0 11 0.00037 38.1 8.3 175 262-459 90-296 (328)
301 1pqw_A Polyketide synthase; ro 72.0 9.4 0.00032 33.7 7.1 50 314-375 22-72 (198)
302 3qvo_A NMRA family protein; st 71.9 6.1 0.00021 35.9 6.0 101 329-446 21-125 (236)
303 1c0p_A D-amino acid oxidase; a 71.9 3.9 0.00014 39.4 5.0 34 331-376 6-39 (363)
304 3nrc_A Enoyl-[acyl-carrier-pro 71.8 5.6 0.00019 37.4 5.9 78 328-422 23-114 (280)
305 2b5w_A Glucose dehydrogenase; 71.7 5.6 0.00019 38.9 6.1 117 330-471 172-301 (357)
306 2ahr_A Putative pyrroline carb 71.7 3.2 0.00011 38.5 4.2 32 332-375 4-35 (259)
307 3ic5_A Putative saccharopine d 71.5 4 0.00014 32.4 4.2 84 331-436 5-92 (118)
308 4ep1_A Otcase, ornithine carba 71.5 19 0.00065 36.6 10.0 128 271-420 123-256 (340)
309 2q0l_A TRXR, thioredoxin reduc 71.4 3.4 0.00012 38.5 4.3 33 332-375 2-34 (311)
310 3s5w_A L-ornithine 5-monooxyge 71.4 2.7 9.3E-05 42.1 3.8 38 331-376 30-68 (463)
311 2cul_A Glucose-inhibited divis 71.3 3.6 0.00012 37.7 4.3 33 331-375 3-35 (232)
312 3uox_A Otemo; baeyer-villiger 71.1 3.9 0.00013 43.1 5.1 35 330-376 8-42 (545)
313 4eqs_A Coenzyme A disulfide re 71.0 3.1 0.0001 42.3 4.1 34 333-376 2-35 (437)
314 3ehe_A UDP-glucose 4-epimerase 71.0 12 0.00043 35.0 8.1 94 333-446 3-114 (313)
315 3urh_A Dihydrolipoyl dehydroge 71.0 3.4 0.00012 42.2 4.5 34 331-376 25-58 (491)
316 3s2u_A UDP-N-acetylglucosamine 70.9 5.1 0.00017 39.5 5.6 40 404-447 85-124 (365)
317 1np3_A Ketol-acid reductoisome 70.9 5.8 0.0002 39.2 6.0 35 329-375 14-48 (338)
318 1dxl_A Dihydrolipoamide dehydr 70.8 4 0.00014 41.2 4.9 33 331-375 6-38 (470)
319 3e48_A Putative nucleoside-dip 70.5 5.7 0.0002 36.8 5.6 97 333-446 2-106 (289)
320 1e6u_A GDP-fucose synthetase; 70.5 7.1 0.00024 36.6 6.3 87 331-446 3-107 (321)
321 4gcm_A TRXR, thioredoxin reduc 70.4 3.6 0.00012 38.7 4.2 32 332-375 7-38 (312)
322 2eq6_A Pyruvate dehydrogenase 70.2 3.3 0.00011 42.1 4.2 35 330-376 5-39 (464)
323 2gqw_A Ferredoxin reductase; f 70.1 5.4 0.00019 39.8 5.7 39 331-379 7-45 (408)
324 2r9z_A Glutathione amide reduc 70.1 3.7 0.00013 41.8 4.6 33 331-375 4-36 (463)
325 2gv8_A Monooxygenase; FMO, FAD 70.0 3.7 0.00013 41.3 4.4 37 330-376 5-41 (447)
326 1fl2_A Alkyl hydroperoxide red 69.9 3.5 0.00012 38.5 4.0 32 332-375 2-33 (310)
327 3v76_A Flavoprotein; structura 69.9 3.5 0.00012 42.0 4.3 35 331-377 27-61 (417)
328 3ka7_A Oxidoreductase; structu 69.8 4.5 0.00015 39.7 4.9 32 333-376 2-33 (425)
329 2a87_A TRXR, TR, thioredoxin r 69.4 3.4 0.00012 39.4 3.8 34 330-375 13-46 (335)
330 2a8x_A Dihydrolipoyl dehydroge 69.4 3.7 0.00012 41.6 4.3 33 331-375 3-35 (464)
331 4ap3_A Steroid monooxygenase; 69.3 3.8 0.00013 43.3 4.5 35 330-376 20-54 (549)
332 2hqm_A GR, grase, glutathione 69.3 3.7 0.00013 42.0 4.3 34 330-375 10-43 (479)
333 3dje_A Fructosyl amine: oxygen 69.2 4.1 0.00014 40.4 4.5 37 331-378 6-42 (438)
334 2qae_A Lipoamide, dihydrolipoy 69.2 4.1 0.00014 41.3 4.6 34 331-376 2-35 (468)
335 3h28_A Sulfide-quinone reducta 69.1 4.2 0.00014 40.7 4.6 35 332-376 3-37 (430)
336 3nrn_A Uncharacterized protein 68.9 4.8 0.00016 39.7 4.9 32 333-376 2-33 (421)
337 2c20_A UDP-glucose 4-epimerase 68.7 10 0.00035 35.7 7.0 99 332-446 2-118 (330)
338 2q1s_A Putative nucleotide sug 68.7 8.4 0.00029 37.5 6.6 103 328-446 29-151 (377)
339 1tt5_A APPBP1, amyloid protein 68.5 2.4 8.3E-05 45.2 2.8 39 327-376 28-66 (531)
340 3pi7_A NADH oxidoreductase; gr 68.3 21 0.00073 34.6 9.4 93 320-434 155-254 (349)
341 2e4g_A Tryptophan halogenase; 68.3 4.3 0.00015 42.4 4.7 38 331-377 25-62 (550)
342 3ihm_A Styrene monooxygenase A 68.1 4.2 0.00014 41.0 4.4 32 332-375 23-54 (430)
343 2weu_A Tryptophan 5-halogenase 68.1 3.5 0.00012 42.1 3.9 37 332-377 3-39 (511)
344 2yqu_A 2-oxoglutarate dehydrog 68.0 4.3 0.00015 41.0 4.5 33 332-376 2-34 (455)
345 3sx6_A Sulfide-quinone reducta 68.0 4.2 0.00015 40.8 4.4 36 332-376 5-40 (437)
346 2qa2_A CABE, polyketide oxygen 68.0 4.3 0.00015 42.1 4.5 34 330-375 11-44 (499)
347 3qj4_A Renalase; FAD/NAD(P)-bi 67.9 3 0.0001 40.0 3.1 35 332-375 2-36 (342)
348 1w4x_A Phenylacetone monooxyge 67.8 4.8 0.00017 41.9 4.9 36 329-376 14-49 (542)
349 4a5l_A Thioredoxin reductase; 67.8 3.7 0.00013 38.2 3.7 31 333-375 6-36 (314)
350 2aqj_A Tryptophan halogenase, 67.7 4.4 0.00015 42.0 4.6 37 331-376 5-41 (538)
351 3gg2_A Sugar dehydrogenase, UD 67.6 4.4 0.00015 42.0 4.5 32 332-375 3-34 (450)
352 1mo9_A ORF3; nucleotide bindin 67.6 4.2 0.00014 42.2 4.4 35 330-376 42-76 (523)
353 7mdh_A Protein (malate dehydro 67.5 3.9 0.00013 42.0 4.1 120 331-463 32-172 (375)
354 2c5a_A GDP-mannose-3', 5'-epim 67.4 20 0.00069 34.9 9.0 98 331-446 29-145 (379)
355 3ew7_A LMO0794 protein; Q8Y8U8 67.4 16 0.00056 31.9 7.7 91 333-446 2-103 (221)
356 3ics_A Coenzyme A-disulfide re 67.3 5.5 0.00019 41.7 5.2 39 330-378 35-73 (588)
357 3fpz_A Thiazole biosynthetic e 67.3 5 0.00017 38.5 4.6 37 329-375 63-99 (326)
358 2wm3_A NMRA-like family domain 67.2 2.4 8.1E-05 39.8 2.2 99 331-447 5-115 (299)
359 3k30_A Histamine dehydrogenase 67.2 5.6 0.00019 42.9 5.4 34 331-376 391-424 (690)
360 3cgb_A Pyridine nucleotide-dis 67.1 5.2 0.00018 40.9 4.9 65 304-378 6-73 (480)
361 3vtz_A Glucose 1-dehydrogenase 67.1 13 0.00045 34.8 7.4 78 326-422 9-92 (269)
362 2o7s_A DHQ-SDH PR, bifunctiona 67.0 6.5 0.00022 41.3 5.7 36 328-375 361-396 (523)
363 3kd9_A Coenzyme A disulfide re 66.9 6.6 0.00023 39.5 5.5 37 331-377 3-39 (449)
364 1zmd_A Dihydrolipoyl dehydroge 66.8 4.6 0.00016 41.0 4.4 34 331-376 6-39 (474)
365 2p5y_A UDP-glucose 4-epimerase 66.8 11 0.00037 35.4 6.7 98 333-446 2-117 (311)
366 3c4a_A Probable tryptophan hyd 66.8 4.9 0.00017 39.3 4.5 33 333-375 2-34 (381)
367 2qa1_A PGAE, polyketide oxygen 66.8 4.4 0.00015 42.0 4.3 35 329-375 9-43 (500)
368 2wpf_A Trypanothione reductase 66.6 6.1 0.00021 40.7 5.3 32 331-373 7-38 (495)
369 2bry_A NEDD9 interacting prote 66.6 5.1 0.00017 41.5 4.7 36 330-377 91-126 (497)
370 3ek2_A Enoyl-(acyl-carrier-pro 66.6 4.9 0.00017 37.0 4.2 38 326-375 9-49 (271)
371 2x4g_A Nucleoside-diphosphate- 66.6 13 0.00043 35.2 7.1 97 332-446 14-126 (342)
372 4g6h_A Rotenone-insensitive NA 66.4 2.5 8.5E-05 44.1 2.4 32 332-375 43-74 (502)
373 3dfz_A SIRC, precorrin-2 dehyd 66.3 4.6 0.00016 38.5 4.0 112 328-470 28-143 (223)
374 1n2s_A DTDP-4-, DTDP-glucose o 66.3 7.5 0.00026 36.1 5.4 86 333-446 2-104 (299)
375 1ebd_A E3BD, dihydrolipoamide 66.3 4.3 0.00015 41.0 4.0 32 332-375 4-35 (455)
376 2dkn_A 3-alpha-hydroxysteroid 66.2 8.4 0.00029 34.6 5.6 69 333-423 3-74 (255)
377 1f0y_A HCDH, L-3-hydroxyacyl-C 66.1 5.5 0.00019 38.1 4.6 32 332-375 16-47 (302)
378 2qcu_A Aerobic glycerol-3-phos 66.1 5 0.00017 41.3 4.5 34 331-376 3-36 (501)
379 3enk_A UDP-glucose 4-epimerase 65.9 18 0.00062 34.1 8.2 97 331-446 5-129 (341)
380 3dqp_A Oxidoreductase YLBE; al 65.8 11 0.00036 33.6 6.2 94 333-446 2-106 (219)
381 3ntd_A FAD-dependent pyridine 65.8 6.4 0.00022 40.6 5.3 37 332-378 2-38 (565)
382 1ges_A Glutathione reductase; 65.7 4.1 0.00014 41.2 3.8 33 331-375 4-36 (450)
383 1onf_A GR, grase, glutathione 65.7 4.7 0.00016 41.5 4.3 33 332-376 3-35 (500)
384 3oc4_A Oxidoreductase, pyridin 65.7 5.9 0.0002 40.0 4.9 36 332-377 3-38 (452)
385 3ktd_A Prephenate dehydrogenas 65.7 10 0.00036 37.9 6.7 32 332-375 9-40 (341)
386 3l8k_A Dihydrolipoyl dehydroge 65.5 5.5 0.00019 40.5 4.7 34 331-376 4-37 (466)
387 1lvl_A Dihydrolipoamide dehydr 65.5 5 0.00017 40.8 4.3 33 331-375 5-37 (458)
388 3ihg_A RDME; flavoenzyme, anth 65.4 4.5 0.00016 41.7 4.1 34 331-376 5-38 (535)
389 4gbj_A 6-phosphogluconate dehy 65.4 10 0.00035 36.8 6.4 97 332-457 6-106 (297)
390 1rsg_A FMS1 protein; FAD bindi 65.3 5.3 0.00018 41.0 4.6 25 329-353 6-30 (516)
391 2zcu_A Uncharacterized oxidore 65.3 5 0.00017 36.9 4.0 98 333-446 1-104 (286)
392 2bc0_A NADH oxidase; flavoprot 65.2 6.1 0.00021 40.5 5.0 37 331-376 35-71 (490)
393 1m6i_A Programmed cell death p 65.2 6.2 0.00021 40.6 5.1 38 330-377 10-47 (493)
394 3gwf_A Cyclohexanone monooxyge 65.2 4.1 0.00014 42.9 3.7 36 330-376 7-42 (540)
395 1q1r_A Putidaredoxin reductase 64.9 6.2 0.00021 39.8 4.9 37 331-377 4-40 (431)
396 1v59_A Dihydrolipoamide dehydr 64.9 5.7 0.0002 40.2 4.7 34 331-376 5-38 (478)
397 4fk1_A Putative thioredoxin re 64.8 5.4 0.00019 37.6 4.2 34 330-375 5-38 (304)
398 4gde_A UDP-galactopyranose mut 64.5 6.2 0.00021 39.6 4.8 23 331-353 10-32 (513)
399 2pyx_A Tryptophan halogenase; 64.4 5.2 0.00018 41.4 4.3 39 331-376 7-52 (526)
400 3e1t_A Halogenase; flavoprotei 64.4 4.2 0.00015 41.9 3.6 35 330-376 6-40 (512)
401 3o0h_A Glutathione reductase; 64.4 6 0.00021 40.4 4.7 33 331-375 26-58 (484)
402 4h7p_A Malate dehydrogenase; s 64.4 8.8 0.0003 38.7 5.9 114 328-449 21-153 (345)
403 2v3a_A Rubredoxin reductase; a 64.3 5 0.00017 39.4 4.0 35 331-375 4-38 (384)
404 3lov_A Protoporphyrinogen oxid 64.2 8.6 0.0003 38.5 5.8 36 331-376 4-39 (475)
405 2yy7_A L-threonine dehydrogena 64.2 7.2 0.00025 36.3 4.9 98 332-445 3-117 (312)
406 1s3e_A Amine oxidase [flavin-c 64.1 6.1 0.00021 40.4 4.7 36 331-378 4-39 (520)
407 3lad_A Dihydrolipoamide dehydr 63.8 6.6 0.00022 39.8 4.9 33 331-375 3-35 (476)
408 2gqf_A Hypothetical protein HI 63.8 4.8 0.00016 40.6 3.8 35 331-377 4-38 (401)
409 3c4n_A Uncharacterized protein 63.4 6.3 0.00022 39.1 4.6 35 332-376 37-71 (405)
410 3cmm_A Ubiquitin-activating en 63.4 5.6 0.00019 45.8 4.7 38 327-375 23-60 (1015)
411 2cdc_A Glucose dehydrogenase g 63.3 19 0.00064 35.3 7.9 33 331-375 181-213 (366)
412 3csu_A Protein (aspartate carb 63.3 70 0.0024 31.9 12.1 128 270-421 95-231 (310)
413 2e1m_A L-glutamate oxidase; L- 63.1 6.9 0.00024 39.7 4.9 35 329-375 42-76 (376)
414 2vvm_A Monoamine oxidase N; FA 62.9 6.6 0.00023 39.6 4.7 32 332-375 40-71 (495)
415 2i0z_A NAD(FAD)-utilizing dehy 62.9 5.9 0.0002 40.1 4.3 34 332-377 27-60 (447)
416 2nvu_B Maltose binding protein 62.7 3.8 0.00013 45.1 3.0 36 330-376 410-445 (805)
417 3sxp_A ADP-L-glycero-D-mannohe 62.6 14 0.00048 35.6 6.7 108 327-446 6-138 (362)
418 3g3e_A D-amino-acid oxidase; F 62.5 6.5 0.00022 37.7 4.3 38 333-376 2-39 (351)
419 2yg5_A Putrescine oxidase; oxi 62.4 6.3 0.00022 39.1 4.4 35 330-376 4-38 (453)
420 1vl0_A DTDP-4-dehydrorhamnose 62.3 9.4 0.00032 35.3 5.3 88 328-446 9-113 (292)
421 3pdi_B Nitrogenase MOFE cofact 62.2 8.1 0.00028 40.2 5.3 88 327-442 309-397 (458)
422 1mv8_A GMD, GDP-mannose 6-dehy 62.0 4.7 0.00016 41.1 3.4 31 333-375 2-32 (436)
423 1rp0_A ARA6, thiazole biosynth 62.0 6.6 0.00023 37.2 4.2 37 330-377 38-74 (284)
424 3nyc_A D-arginine dehydrogenas 61.9 4.7 0.00016 38.5 3.2 33 331-376 9-41 (381)
425 3d6n_B Aspartate carbamoyltran 61.9 1E+02 0.0034 30.5 12.8 130 263-421 80-215 (291)
426 3ruf_A WBGU; rossmann fold, UD 61.7 5 0.00017 38.3 3.3 101 329-446 23-151 (351)
427 1hdc_A 3-alpha, 20 beta-hydrox 61.7 5.7 0.0002 36.8 3.7 36 328-375 2-38 (254)
428 3tpf_A Otcase, ornithine carba 61.7 44 0.0015 33.3 10.3 170 262-458 81-274 (307)
429 2r0c_A REBC; flavin adenine di 61.6 6.1 0.00021 41.3 4.3 34 331-376 26-59 (549)
430 1ojt_A Surface protein; redox- 61.6 7.1 0.00024 39.8 4.7 34 331-376 6-39 (482)
431 3atr_A Conserved archaeal prot 61.5 3.7 0.00013 41.4 2.5 34 331-376 6-39 (453)
432 1dlj_A UDP-glucose dehydrogena 61.5 6.8 0.00023 39.7 4.5 30 333-375 2-31 (402)
433 1uzm_A 3-oxoacyl-[acyl-carrier 61.4 24 0.00081 32.4 7.8 77 326-422 10-92 (247)
434 3m6i_A L-arabinitol 4-dehydrog 61.4 8.7 0.0003 37.5 5.1 56 307-374 157-212 (363)
435 3i6d_A Protoporphyrinogen oxid 61.4 5.7 0.0002 39.2 3.8 38 332-375 6-43 (470)
436 3dk9_A Grase, GR, glutathione 61.2 6.1 0.00021 40.1 4.1 34 330-375 19-52 (478)
437 1xq6_A Unknown protein; struct 61.2 9.2 0.00031 34.1 4.9 100 330-446 3-133 (253)
438 2wtb_A MFP2, fatty acid multif 61.1 6.9 0.00024 43.1 4.7 32 332-375 313-344 (725)
439 1zq6_A Otcase, ornithine carba 61.0 43 0.0015 34.2 10.2 115 286-419 145-273 (359)
440 2cdu_A NADPH oxidase; flavoenz 61.0 7.7 0.00027 39.0 4.8 34 333-376 2-35 (452)
441 1nhp_A NADH peroxidase; oxidor 60.9 7.8 0.00027 38.9 4.8 35 333-377 2-36 (447)
442 1o94_A Tmadh, trimethylamine d 60.9 7.3 0.00025 42.5 4.9 34 331-376 389-422 (729)
443 3tpc_A Short chain alcohol deh 60.5 20 0.0007 32.9 7.2 76 328-422 4-92 (257)
444 1xhc_A NADH oxidase /nitrite r 60.4 5.2 0.00018 39.5 3.3 35 331-378 8-42 (367)
445 4a2c_A Galactitol-1-phosphate 60.3 21 0.0007 34.4 7.5 55 308-374 139-193 (346)
446 3sc6_A DTDP-4-dehydrorhamnose 60.3 5.8 0.0002 36.7 3.4 84 332-446 6-106 (287)
447 1cjc_A Protein (adrenodoxin re 60.2 9.3 0.00032 39.2 5.3 35 331-375 6-40 (460)
448 1fec_A Trypanothione reductase 60.1 9.3 0.00032 39.3 5.3 32 331-373 3-34 (490)
449 4dgk_A Phytoene dehydrogenase; 60.1 6.6 0.00022 39.5 4.1 22 332-353 2-23 (501)
450 1sb8_A WBPP; epimerase, 4-epim 60.0 8.9 0.0003 36.7 4.8 101 329-446 25-153 (352)
451 2b9w_A Putative aminooxidase; 59.6 8.6 0.00029 37.8 4.7 36 330-376 5-40 (424)
452 2bi7_A UDP-galactopyranose mut 59.6 8 0.00027 38.5 4.5 34 331-376 3-36 (384)
453 2q2v_A Beta-D-hydroxybutyrate 59.5 6.8 0.00023 36.2 3.8 35 329-375 2-37 (255)
454 1y0p_A Fumarate reductase flav 59.5 8.8 0.0003 40.2 5.0 40 327-378 122-161 (571)
455 1xdi_A RV3303C-LPDA; reductase 59.5 7.8 0.00027 39.7 4.5 36 332-376 3-38 (499)
456 3k13_A 5-methyltetrahydrofolat 59.4 21 0.00071 35.5 7.4 79 263-374 94-179 (300)
457 2iid_A L-amino-acid oxidase; f 59.4 10 0.00036 38.2 5.4 33 331-375 33-65 (498)
458 3tzq_B Short-chain type dehydr 59.1 7.4 0.00025 36.5 4.0 77 327-422 7-96 (271)
459 4eez_A Alcohol dehydrogenase 1 58.8 21 0.00073 34.3 7.3 48 315-374 149-196 (348)
460 2zb4_A Prostaglandin reductase 58.8 17 0.00058 35.4 6.7 55 309-374 137-194 (357)
461 3lk7_A UDP-N-acetylmuramoylala 58.6 8 0.00027 39.6 4.5 36 328-375 6-41 (451)
462 1hxh_A 3BETA/17BETA-hydroxyste 58.6 5.2 0.00018 37.0 2.8 36 328-375 3-39 (253)
463 3ko8_A NAD-dependent epimerase 58.6 31 0.0011 32.1 8.2 94 333-446 2-113 (312)
464 1pl8_A Human sorbitol dehydrog 58.4 12 0.00041 36.6 5.5 49 314-374 156-204 (356)
465 3i1j_A Oxidoreductase, short c 58.4 19 0.00064 32.7 6.5 37 327-375 10-47 (247)
466 4b63_A L-ornithine N5 monooxyg 58.3 6.1 0.00021 41.0 3.5 22 333-354 41-62 (501)
467 2cf5_A Atccad5, CAD, cinnamyl 58.1 22 0.00075 34.8 7.4 46 317-374 167-212 (357)
468 2ivd_A PPO, PPOX, protoporphyr 57.8 7.1 0.00024 39.0 3.8 34 331-376 16-49 (478)
469 4dna_A Probable glutathione re 57.6 8 0.00027 39.1 4.2 33 331-375 5-37 (463)
470 2rgh_A Alpha-glycerophosphate 57.5 8.8 0.0003 40.6 4.6 35 331-377 32-66 (571)
471 2ydy_A Methionine adenosyltran 57.4 20 0.00068 33.5 6.7 92 331-446 2-110 (315)
472 2jl1_A Triphenylmethane reduct 57.4 5.5 0.00019 36.8 2.7 98 333-446 2-107 (287)
473 1wly_A CAAR, 2-haloacrylate re 57.3 16 0.00056 35.1 6.2 50 314-375 129-179 (333)
474 1kyq_A Met8P, siroheme biosynt 57.1 6.5 0.00022 38.6 3.3 36 328-375 10-45 (274)
475 1pn0_A Phenol 2-monooxygenase; 56.8 7.8 0.00027 41.9 4.2 39 331-376 8-46 (665)
476 3k31_A Enoyl-(acyl-carrier-pro 56.8 12 0.0004 35.7 5.0 80 327-422 26-119 (296)
477 3nks_A Protoporphyrinogen oxid 56.7 10 0.00034 37.9 4.7 35 332-376 3-37 (477)
478 2x8g_A Thioredoxin glutathione 56.6 8.9 0.0003 40.2 4.5 33 330-374 106-138 (598)
479 3st7_A Capsular polysaccharide 56.5 25 0.00085 34.0 7.4 77 333-444 2-92 (369)
480 3da1_A Glycerol-3-phosphate de 56.2 7.6 0.00026 40.9 3.9 33 331-375 18-50 (561)
481 1ps9_A 2,4-dienoyl-COA reducta 56.0 8.5 0.00029 41.3 4.3 34 331-376 373-406 (671)
482 1e3j_A NADP(H)-dependent ketos 55.9 16 0.00053 35.6 5.8 48 314-374 153-200 (352)
483 1rkx_A CDP-glucose-4,6-dehydra 55.9 21 0.00071 34.1 6.6 102 329-446 7-132 (357)
484 2i76_A Hypothetical protein; N 55.9 1.5 5.3E-05 41.7 -1.4 21 332-352 3-23 (276)
485 3oig_A Enoyl-[acyl-carrier-pro 55.7 16 0.00054 33.7 5.6 37 327-375 3-42 (266)
486 2hcy_A Alcohol dehydrogenase 1 55.7 15 0.00051 35.7 5.6 44 318-374 158-202 (347)
487 1gte_A Dihydropyrimidine dehyd 55.6 8.1 0.00028 43.9 4.2 34 331-375 187-220 (1025)
488 1o5i_A 3-oxoacyl-(acyl carrier 55.5 33 0.0011 31.6 7.7 76 327-422 15-92 (249)
489 1t2a_A GDP-mannose 4,6 dehydra 55.3 24 0.00084 33.9 7.1 101 332-446 25-156 (375)
490 3n74_A 3-ketoacyl-(acyl-carrie 55.3 6.4 0.00022 36.2 2.8 77 327-422 5-94 (261)
491 1v0j_A UDP-galactopyranose mut 55.2 12 0.00041 37.3 5.0 23 331-353 7-29 (399)
492 1qo8_A Flavocytochrome C3 fuma 55.2 11 0.00038 39.4 4.9 37 330-378 120-156 (566)
493 4b7c_A Probable oxidoreductase 55.2 22 0.00077 34.1 6.8 50 313-374 132-182 (336)
494 3ps9_A TRNA 5-methylaminomethy 55.2 9.7 0.00033 40.7 4.5 33 332-376 273-305 (676)
495 3pvc_A TRNA 5-methylaminomethy 55.2 7.8 0.00027 41.7 3.8 34 331-376 264-297 (689)
496 3hdq_A UDP-galactopyranose mut 55.0 11 0.00039 38.3 4.9 34 330-375 28-61 (397)
497 3ic9_A Dihydrolipoamide dehydr 54.9 7.9 0.00027 39.8 3.7 32 332-375 9-40 (492)
498 3nlc_A Uncharacterized protein 54.9 6.7 0.00023 41.8 3.2 33 331-375 107-139 (549)
499 1kol_A Formaldehyde dehydrogen 54.9 22 0.00075 35.2 6.8 48 315-374 171-218 (398)
500 2fzw_A Alcohol dehydrogenase c 54.6 24 0.00083 34.5 7.0 37 327-374 187-223 (373)
No 1
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=100.00 E-value=1.2e-170 Score=1346.21 Aligned_cols=424 Identities=54% Similarity=0.936 Sum_probs=418.3
Q ss_pred ccccccccCCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHHHhhh
Q 011816 50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 129 (477)
Q Consensus 50 ~~G~~~l~~p~~NkG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~ 129 (477)
.+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.|+++++++|+||+||++||++||+||||++++
T Consensus 1 ~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~ 80 (555)
T 1gq2_A 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTS 80 (555)
T ss_dssp CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CChhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCcceeeehhhHhh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccccchh
Q 011816 130 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 209 (477)
Q Consensus 130 ~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~gmgI~~G 209 (477)
|++|+|||+||||||++|++||+|||+|+|+|+|++|+++++++++|||.++|+|||||||||||||||+|++|||||||
T Consensus 81 ~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvG 160 (555)
T 1gq2_A 81 DIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVG 160 (555)
T ss_dssp THHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHH
T ss_pred hHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH
Q 011816 210 KLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 289 (477)
Q Consensus 210 Kl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a 289 (477)
|++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||++|+++|||+++||||||++|||
T Consensus 161 Kl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~a 240 (555)
T 1gq2_A 161 KLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANA 240 (555)
T ss_dssp HHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred HHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeE
Q 011816 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (477)
Q Consensus 290 f~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i 369 (477)
|+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+|||++||
T Consensus 241 f~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~-G~~~eeA~~~i 319 (555)
T 1gq2_A 241 FRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKEEAIKRI 319 (555)
T ss_dssp HHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHH-TCCHHHHHTTE
T ss_pred HHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHc-CCChHHHhCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999885 99999999999
Q ss_pred EEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 370 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 370 ~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
||||++|||+++|.+ |+++|++||++.++.++|+|||+++|||||||+|+++|+||+|||++|+++|+|||||||||||
T Consensus 320 ~~~D~~Gli~~~r~~-l~~~k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt 398 (555)
T 1gq2_A 320 WMVDSKGLIVKGRAS-LTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPT 398 (555)
T ss_dssp EEEETTEECBTTCSS-CCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSG
T ss_pred EEEECCCeeeCCCCC-chHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 999999999999965 9999999999876778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhcccCCcEEEEcCCCC
Q 011816 450 SQSECTAEEAYTWSKVQTIILQHFPG 475 (477)
Q Consensus 450 ~~~E~tpe~A~~~t~G~aifAsGsp~ 475 (477)
+++||+||||++||+|+|||||||||
T Consensus 399 ~~aE~~pe~a~~~t~G~aivATGspf 424 (555)
T 1gq2_A 399 SKAECTAEQLYKYTEGRGIFASGSPF 424 (555)
T ss_dssp GGCSSCHHHHHHHTTTCCEEEESSCC
T ss_pred CccCcCHHHHHHhccCCEEEEeCCCC
Confidence 99999999999999999999999996
No 2
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=100.00 E-value=3.1e-170 Score=1346.20 Aligned_cols=425 Identities=52% Similarity=0.925 Sum_probs=418.3
Q ss_pred ccccccccCCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHHHhhh
Q 011816 50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 129 (477)
Q Consensus 50 ~~G~~~l~~p~~NkG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~ 129 (477)
.+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.|+++++++|+||+||++||++||+||||++++
T Consensus 3 ~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~ 82 (564)
T 1pj3_A 3 EKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQD 82 (564)
T ss_dssp CCSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CchHHHhCCCcccCCCCCCHHHHHhCCCCcCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcccceeehhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccccchh
Q 011816 130 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 209 (477)
Q Consensus 130 ~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~gmgI~~G 209 (477)
|++|+|||+||||||++|++||+|||+|+|+|+|++|+++++++|+|||.++|+|||||||||||||||+|++||+||||
T Consensus 83 ~~~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i~~~l~n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvG 162 (564)
T 1pj3_A 83 DIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVG 162 (564)
T ss_dssp CHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHH
T ss_pred CHHHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHHHHHHHhCCCCCceEEEEEcccccccCCCCCCCcccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH
Q 011816 210 KLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 289 (477)
Q Consensus 210 Kl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a 289 (477)
|++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||++|+++|||+++||||||++|||
T Consensus 163 Kl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~a 242 (564)
T 1pj3_A 163 KLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNA 242 (564)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred HHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeE
Q 011816 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (477)
Q Consensus 290 f~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i 369 (477)
|+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||++||
T Consensus 243 f~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~-~Gl~~eeA~~~i 321 (564)
T 1pj3_A 243 FRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVE-NGLSEQEAQKKI 321 (564)
T ss_dssp HHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHH-TTCCHHHHHHTE
T ss_pred HHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHH-cCCChHHhhCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 599999999999
Q ss_pred EEEccCCcccCCCCCCCchhchhhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 370 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 370 ~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
||||++|||+++|.++|+++|++||++.++. ++|+|||+++|||||||+|+++|+||+|||++|+++|+|||||||||
T Consensus 322 ~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN 401 (564)
T 1pj3_A 322 WMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSN 401 (564)
T ss_dssp EEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred EEEeCCCeEECCCcccchHHHHHHHHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 9999999999999435999999999987666 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEEcCCCC
Q 011816 448 PTSQSECTAEEAYTWSKVQTIILQHFPG 475 (477)
Q Consensus 448 Pt~~~E~tpe~A~~~t~G~aifAsGsp~ 475 (477)
||+++||+||||++||+|+|||||||||
T Consensus 402 Pt~~aE~~pe~a~~~t~G~aivATGspf 429 (564)
T 1pj3_A 402 PTAQAECTAEEAYTLTEGRCLFASGSPF 429 (564)
T ss_dssp SGGGCSCCHHHHHHHTTTCCEEEESSCC
T ss_pred CCCccCcCHHHHHhhccCCEEEEeCCCC
Confidence 9999999999999999999999999996
No 3
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=100.00 E-value=8.7e-170 Score=1346.80 Aligned_cols=428 Identities=48% Similarity=0.856 Sum_probs=421.4
Q ss_pred ccccccccccccCCCCCCCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHH
Q 011816 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (477)
Q Consensus 46 ~~~~~~G~~~l~~p~~NkG~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 125 (477)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.|+++++++|+||+||++||++||+||||
T Consensus 33 ~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfyr 112 (605)
T 1o0s_A 33 VTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYR 112 (605)
T ss_dssp CCCSCCHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccCcchHHHhCCCcccCCCCCCHHHHHHCCCCcCCCCCcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHhhcccchhhhh
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCc--chHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc
Q 011816 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK--GKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG 203 (477)
Q Consensus 126 ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~--g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~g 203 (477)
++++|++|+|||+||||||++|++||+|||+|+|+|+|++|+ ++++++++|||.++|+|||||||||||||||||++|
T Consensus 113 ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~g~yis~~d~~~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g 192 (605)
T 1o0s_A 113 VVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYG 192 (605)
T ss_dssp HHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGG
T ss_pred hhhhCHHHhCCeeeCccHHHHHHHHHHHhcChHhhhccccCcccchHHHHHhcCCCCCceEEEEEccccceecCCCCCCc
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeec
Q 011816 204 MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 283 (477)
Q Consensus 204 mgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~ED 283 (477)
|||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||++|+++|||+++|||||
T Consensus 193 ~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG~r~~Rv~g~~Yd~fvdefv~av~~~fGp~~~I~~ED 272 (605)
T 1o0s_A 193 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFED 272 (605)
T ss_dssp GHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccCcCCCCCChHHHHHHHHHHHHHHHHHhCCCcEeeHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChh
Q 011816 284 FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 363 (477)
Q Consensus 284 f~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~e 363 (477)
|++||||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|
T Consensus 273 f~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~-~Gl~~e 351 (605)
T 1o0s_A 273 FANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQN-EGISKE 351 (605)
T ss_dssp CCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHT-TTCCHH
T ss_pred cCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 599999
Q ss_pred hhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 364 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 364 eA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
||++||||||++|||+++|.+ |+++|++||++.++.++|+|||+++|||||||+|+++|+||+|||++||++|+|||||
T Consensus 352 eA~~~i~~vD~~Gli~~~r~~-l~~~k~~~A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 430 (605)
T 1o0s_A 352 EACNRIYLMDIDGLVTKNRKE-MNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIF 430 (605)
T ss_dssp HHHHTEEEEETTEECBTTCSS-CCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEE
T ss_pred hhhCeEEEEECCCceeCCCCC-chHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 999999999999999999965 9999999999876778999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCHHHHhcccCCcEEEEcCCCC
Q 011816 444 ALSNPTSQSECTAEEAYTWSKVQTIILQHFPG 475 (477)
Q Consensus 444 aLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~ 475 (477)
||||||+++||+||||++||+|+|||||||||
T Consensus 431 aLSNPt~~aE~~pe~a~~~t~G~aivATGspF 462 (605)
T 1o0s_A 431 ALSNPTSKAECTAEEAYTFTNGAALYASGSPF 462 (605)
T ss_dssp ECCSSGGGCSSCHHHHHHTTTSCCEEEESSCC
T ss_pred ECCCCCCCcCcCHHHHHhhccCCEEEEECCCC
Confidence 99999999999999999999999999999997
No 4
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=100.00 E-value=2.2e-97 Score=774.92 Aligned_cols=288 Identities=31% Similarity=0.424 Sum_probs=256.5
Q ss_pred hhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-Ccccc
Q 011816 128 IDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGC-QGMGI 206 (477)
Q Consensus 128 ~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~gmgI 206 (477)
+++. +.|||+||||||++|++|+ +|++++++++.+| |+|||||||||||||||+|+ +||||
T Consensus 55 ~~~~-~dLslaYTPgVa~~c~~i~-------------~dp~~~~~yt~kg----n~VaVVTDG~aILGLGDiG~~agmpI 116 (487)
T 3nv9_A 55 LAGF-NWFNAYYTPGVSRISTNIR-------------DNNDSSLFYSLRG----NFVGVVSDSTRVLGDGDVTPPGGLGV 116 (487)
T ss_dssp CSSG-GGHHHHSTTTHHHHHHHHH-------------HCGGGHHHHSGGG----GEEEEEECSSSBGGGBCCCGGGGHHH
T ss_pred CCCH-HHCeeeeCcchHHHHHHHH-------------hChHHHhhhcccC----CEEEEEEcCceeeeccccccccCCch
Confidence 4455 4599999999999999985 4567777666555 69999999999999999999 58999
Q ss_pred chhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCc
Q 011816 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (477)
Q Consensus 207 ~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~ 286 (477)
||||++|||+||||| |||||||+||+| +++|| ++ +.|||+++.++||+ ||||||++
T Consensus 117 meGKl~Lyk~~aGId---~lPI~LD~gt~~--~~~d~---------------de-fve~v~~~~P~fG~---InlEDf~a 172 (487)
T 3nv9_A 117 MEGKALLMKYLGGID---AVPICIDSKNKE--GKNDP---------------DA-VIEFVQRIQHTFGA---INLEDISQ 172 (487)
T ss_dssp HHHHHHHHHHHHCCE---EEEEECCCBCTT--SCBCH---------------HH-HHHHHHHHGGGCSE---EEECSCCT
T ss_pred hhhHHHHHHhcCCCc---eeeeEEeCCCcc--ccCCH---------------HH-HHHHHHHhCCCCCe---ecHhhcCC
Confidence 999999999999999 999999999754 46664 34 44677777788877 99999999
Q ss_pred ccHHHHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhh
Q 011816 287 HNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (477)
Q Consensus 287 ~~af~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~ee 364 (477)
||||+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|+++
T Consensus 173 p~af~il~ryr~~~~ipvFnDD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~-----~G~~~-- 245 (487)
T 3nv9_A 173 PNCYKILDVLRESCDIPVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVT-----AGADP-- 245 (487)
T ss_dssp THHHHHHHHHHHHCSSCEEETTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHH-----TTCCG--
T ss_pred chHHHHHHHHHhhccCCccccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHH-----cCCCc--
Confidence 999999999998 899999999999999999999999999999999999999999999999999975 49985
Q ss_pred hcCeEEEEccCCcccCCCCCCC-----chhchhhccccC--CCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcC
Q 011816 365 TRKKICLVDSKGLIVSSRKDSL-----QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASF 436 (477)
Q Consensus 365 A~~~i~lvD~~GLi~~~r~~~l-----~~~k~~~a~~~~--~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~ 436 (477)
+||||||++|||+++|.+ | .++|.+||+... ...+|+|||++ +|||||+|++ +|+||+|||++|+
T Consensus 246 --~~i~l~D~~Gli~~~R~~-l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~--adVlIG~S~~~pg~ft~e~V~~Ma-- 318 (487)
T 3nv9_A 246 --KKIVMFDSKGSLHNGRED-IKKDTRFYRKWEICETTNPSKFGSIAEACVG--ADVLISLSTPGPGVVKAEWIKSMG-- 318 (487)
T ss_dssp --GGEEEEETTEECCTTCHH-HHHCGGGHHHHHHHHHSCTTCCCSHHHHHTT--CSEEEECCCSSCCCCCHHHHHTSC--
T ss_pred --ccEEEEeccccccCCcch-hhhhcccHHHHHHHHhcccccCCCHHHHHhc--CCEEEEecccCCCCCCHHHHHhhc--
Confidence 899999999999999954 6 346678888642 46799999998 7999999976 7999999999997
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 437 NEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 437 ~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
+||||||||||| |||+||||++ +|+||||||||+|
T Consensus 319 -~~PIIFaLSNPt--pEi~pe~A~~--~G~aIvATGrsd~ 353 (487)
T 3nv9_A 319 -EKPIVFCCANPV--PEIYPYEAKE--AGAYIVATGRGDF 353 (487)
T ss_dssp -SSCEEEECCSSS--CSSCHHHHHH--TTCSEEEESCTTS
T ss_pred -CCCEEEECCCCC--ccCCHHHHHH--hCCEEEEECCCCC
Confidence 899999999999 7999999998 5999999999887
No 5
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=100.00 E-value=1.5e-91 Score=722.09 Aligned_cols=286 Identities=30% Similarity=0.418 Sum_probs=259.9
Q ss_pred hhhHHHhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCC
Q 011816 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200 (477)
Q Consensus 121 ~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 200 (477)
.+++++.+++. |+|||+||||||++|++|+ ++| ++++ +|+.++++|+|||||||||||||+|
T Consensus 23 ~~~~~~~~~~~-~~l~i~YtP~V~~~c~~i~---~~p----------~~v~----~~t~~~~~V~VvTdG~~iLGLGD~G 84 (398)
T 2a9f_A 23 EVQPKVDIKTK-HDLSIAYTPGVASVSSAIA---KDK----------TLAY----DLTTKKNTVAVISDGTAVLGLGDIG 84 (398)
T ss_dssp EEEESSCCSSH-HHHHHHSTTTTHHHHHHHH---HCG----------GGHH----HHSGGGTEEEEEECSSSCTTSCCCC
T ss_pred EEEEecccCCH-HHCeEEECchHHHHHHHHH---hCH----------HHHH----HhcccCCEEEEEECCccccCCCCcc
Confidence 45666777776 5589999999999999986 345 4444 6899999999999999999999999
Q ss_pred CC-ccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-ee
Q 011816 201 CQ-GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VL 278 (477)
Q Consensus 201 ~~-gmgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~l 278 (477)
++ |||||+||+.|||+||||| |+|||||+|| +||||++|+..| |. +.
T Consensus 85 ~~aG~pI~eGK~~Lf~~~agid---~~pi~Ldv~~---------------------------~dEfv~~v~~~~-p~F~~ 133 (398)
T 2a9f_A 85 PEAAMPVMEGKAALFKAFAGVD---AIPIVLDTKD---------------------------TEEIISIVKALA-PTFGG 133 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCE---EEEEECCCCC---------------------------HHHHHHHHHHHG-GGCSE
T ss_pred cccCCcchhCHHHHHHhccCCc---eeeeEeCCCC---------------------------HHHHHHHHHHcC-CceeE
Confidence 98 8999999999999999999 9999999996 799999999888 66 78
Q ss_pred eeeecCCcccHHHHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHh
Q 011816 279 IQFEDFANHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (477)
Q Consensus 279 Iq~EDf~~~~af~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (477)
||||||++||||++|+|||+ +||||||||||||+|++||++||+|++|++++|+||||+|||+||++||++++.+
T Consensus 134 I~lED~~~p~~f~il~~~r~~~~ipvf~DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~--- 210 (398)
T 2a9f_A 134 INLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAA--- 210 (398)
T ss_dssp EEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHH---
T ss_pred eccccCCChHHHHHHHHhhhcCCcceecchhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHc---
Confidence 99999999999999999997 5999999999999999999999999999999999999999999999999999875
Q ss_pred hCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHH
Q 011816 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM 433 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~---~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~M 433 (477)
|+ ++||++|++|||+++|.+.|+++|++||++... ..+|+|+|++ +|||||+|+ +|+||+|+|++|
T Consensus 211 --Ga------~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~--ADV~IG~Sa-pgl~T~EmVk~M 279 (398)
T 2a9f_A 211 --GA------TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG--ADIFIGVSA-PGVLKAEWISKM 279 (398)
T ss_dssp --TC------CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHT--TCSEEECCS-TTCCCHHHHHTS
T ss_pred --CC------CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhcc--CCEEEecCC-CCCCCHHHHHhh
Confidence 64 799999999999999933499999999987442 4689999998 899999999 889999999999
Q ss_pred HcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 434 ASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 434 a~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
+ ++|||||||||| |||+||||++| |+|||||||++|
T Consensus 280 a---~~pIIfalsNPt--~E~~pe~a~~~--g~~i~atGrs~~ 315 (398)
T 2a9f_A 280 A---ARPVIFAMANPI--PEIYPDEALEA--GAYIVGTGRSDF 315 (398)
T ss_dssp C---SSCEEEECCSSS--CSSCHHHHHTT--TCSEEEESCTTS
T ss_pred C---CCCEEEECCCCC--ccCCHHHHHHh--CCeEEEeCCCCC
Confidence 8 899999999999 89999999999 999999999987
No 6
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=100.00 E-value=4.1e-88 Score=695.21 Aligned_cols=286 Identities=29% Similarity=0.425 Sum_probs=264.9
Q ss_pred hhhHHHhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCC
Q 011816 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200 (477)
Q Consensus 121 ~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 200 (477)
..++++.+++.|+ |||+||||||++|++|+ ++|.++| +|+.++++|+|||||||||||||+|
T Consensus 27 ~~~~~~~~~~~~~-l~i~YtP~V~~~c~~~~---~~p~~v~--------------~~t~~~~~V~VvTdg~~vLGlGD~G 88 (388)
T 1vl6_A 27 RTALPVEKVDRET-LSLLYTPGVADVARACA---EDPEKTY--------------VYTSRWNTVAVVSDGSAVLGLGNIG 88 (388)
T ss_dssp EEECSCSCCCHHH-HHHHSTTTHHHHHHHHH---HCGGGHH--------------HHSGGGGEEEEEECSTTBTTTBSCC
T ss_pred EEEEeeecCCHHH-CeEEECchHHHHHHHHH---hCHHHHH--------------hhcccCCeEEEEECCccccCCCccc
Confidence 5678888998866 89999999999999986 5554444 6899999999999999999999999
Q ss_pred CC-ccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-ee
Q 011816 201 CQ-GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VL 278 (477)
Q Consensus 201 ~~-gmgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~l 278 (477)
++ |||||+||+.|||+||||| |+|||||+|| +||||++|+..| |. ..
T Consensus 89 ~~ag~pI~egK~~Lf~~~agid---~~pi~ldv~~---------------------------~dE~v~~vk~~~-p~f~~ 137 (388)
T 1vl6_A 89 PYGALPVMEGKAFLFKAFADID---AFPICLSESE---------------------------EEKIISIVKSLE-PSFGG 137 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCE---EEEEECSCCC---------------------------HHHHHHHHHHTG-GGCSE
T ss_pred cccCCcchhCHHHHHHhccCCc---eEeEEeCCCC---------------------------HHHHHHHHHHcC-CcceE
Confidence 98 8999999999999999999 9999999996 699999999988 66 78
Q ss_pred eeeecCCcccHHHHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHh
Q 011816 279 IQFEDFANHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (477)
Q Consensus 279 Iq~EDf~~~~af~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (477)
||||||++||||++|+|||+ +||||||||||||+|++||++||+|++|++++|+||||+|||+||++||++++..
T Consensus 138 i~lED~~~p~af~il~r~r~~~~Ipvf~DDiqGTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~--- 214 (388)
T 1vl6_A 138 INLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDL--- 214 (388)
T ss_dssp EEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHH---
T ss_pred eCHhhcCCHHHHHHHHHhhhhcCcceeccccccHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhC---
Confidence 99999999999999999997 6999999999999999999999999999999999999999999999999999874
Q ss_pred hCCCChhhhcCeEEEEccCCcccCCCCCC-CchhchhhccccCC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHH
Q 011816 357 QTKAPVEETRKKICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 432 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD~~GLi~~~r~~~-l~~~k~~~a~~~~~---~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~ 432 (477)
| .++||++|++|||+.+|.+. |+++|++||++... ..+|.|+|++ +|||||+|+ +|+||+|+|++
T Consensus 215 --G------~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~--ADVlIG~Sa-p~l~t~emVk~ 283 (388)
T 1vl6_A 215 --G------VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEG--ADFFIGVSR-GNILKPEWIKK 283 (388)
T ss_dssp --T------CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTT--CSEEEECSC-SSCSCHHHHTT
T ss_pred --C------CCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHcc--CCEEEEeCC-CCccCHHHHHh
Confidence 5 47999999999999999643 99999999987442 4689999998 999999999 78999999999
Q ss_pred HHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 433 MASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 433 Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
|+ ++||||+||||| |||+||||++| |+|||||||++|
T Consensus 284 Ma---~~pIIfalSNPt--~E~~p~~a~~~--g~~i~atGr~~~ 320 (388)
T 1vl6_A 284 MS---RKPVIFALANPV--PEIDPELAREA--GAFIVATGRSDH 320 (388)
T ss_dssp SC---SSCEEEECCSSS--CSSCHHHHHHT--TCSEEEESCTTS
T ss_pred cC---CCCEEEEcCCCC--CCCCHHHHHHh--cCeEEEeCCCCC
Confidence 97 799999999999 99999999999 999999999987
No 7
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=100.00 E-value=1.9e-63 Score=519.55 Aligned_cols=287 Identities=29% Similarity=0.475 Sum_probs=253.7
Q ss_pred hhhHHHhhhcccccCCcccccchHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCC
Q 011816 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200 (477)
Q Consensus 121 ~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 200 (477)
..++++.+++.+ +|||+||||||++|++|++ |++++++ ||.++|+|+|||||+|||||||+|
T Consensus 21 ~~~~~~~~~~~~-~l~~~YtP~v~~~c~~~~~-------------~~~~~~~----~~~~~~~v~vvtdgt~ilGlG~iG 82 (439)
T 2dvm_A 21 EVIPKVSLESRE-ELTLAYTPGVAEPCKEIAR-------------DPGKVYE----YTSKGNLVAVVSDGSRILGLGNIG 82 (439)
T ss_dssp EEEESSCCCSHH-HHHHHSTTTTHHHHHHHHH-------------CGGGHHH----HSSGGGEEEEEECSTTBTTTBCCC
T ss_pred EEEEeeccCCHH-HCeeEECchhHHHHHHHHH-------------CHHHHHh----hcccCcEEEEEECCCeEeccccee
Confidence 356677778775 4899999999999999872 6677764 888999999999999999999999
Q ss_pred CC-ccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-ee
Q 011816 201 CQ-GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VL 278 (477)
Q Consensus 201 ~~-gmgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~l 278 (477)
.+ ++|+|+||++||++||||| ++|++||+.+ +++|+++|+..+ |+ ..
T Consensus 83 ~hS~sPvmh~ka~lf~~~gGid---~~yi~ldv~d---------------------------~de~~~~v~~l~-~~f~G 131 (439)
T 2dvm_A 83 PLAGLPVMEGKALLFKRFGGVD---AFPIMIKEQE---------------------------PNKFIDIVKAIA-PTFGG 131 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCE---EEEEECSCCS---------------------------HHHHHHHHHHTG-GGCSE
T ss_pred ccccCHHHHHHHHHHHHhCCCC---CeeeeeecCC---------------------------HHHHHHHHHHhC-ccCcE
Confidence 97 7999999999999999999 9999999931 467777777654 33 45
Q ss_pred eeeecCCcccHHHHHHHHcC--CCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHh
Q 011816 279 IQFEDFANHNAFELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (477)
Q Consensus 279 Iq~EDf~~~~af~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (477)
||||||+.|+||++|++|++ ++||||||+||||++.++|+++|++..|++++++|+||+|||+||.+|+.+|..
T Consensus 132 invED~T~P~k~~il~~l~~avNt~vf~dD~~gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGgAg~aia~~L~~---- 207 (439)
T 2dvm_A 132 INLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRILTE---- 207 (439)
T ss_dssp EEECSCCTTHHHHHHHHHHHHCSSCEEEHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSHHHHHHHHHHHH----
T ss_pred EEEEeCCCchHHHHHHHHHHhcCEEEEeCCCcEEeehHHHHHHHHHHHhCCCccCCEEEEECccHHHHHHHHHHHH----
Confidence 99999999999999999986 799999999999999999999999999999999999999999999999999986
Q ss_pred hCCCChhhhcCeEEEEc----cCCcccCCCCCC---CchhchhhccccC---CCCCHHHHhcccCCcEEEeccCCC-CCC
Q 011816 357 QTKAPVEETRKKICLVD----SKGLIVSSRKDS---LQHFKKPWAHEHE---PVNNLLDAVKVIKPTILIGSSGVG-RTF 425 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD----~~GLi~~~r~~~---l~~~k~~~a~~~~---~~~~L~eav~~vkptvLIG~S~~~-g~F 425 (477)
.|++ +++||++| ++||++++ .. +.+++++|++... ...+|.|+++. +|+|||+|+.+ |.|
T Consensus 208 -~G~~----~~~I~vvd~~~~R~G~~~~a--~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~--aDVlInaT~~~~G~~ 278 (439)
T 2dvm_A 208 -AGVK----PENVRVVELVNGKPRILTSD--LDLEKLFPYRGWLLKKTNGENIEGGPQEALKD--ADVLISFTRPGPGVI 278 (439)
T ss_dssp -TTCC----GGGEEEEEEETTEEEECCTT--SCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTT--CSEEEECSCCCSSSS
T ss_pred -cCCC----cCeEEEEEccCCCcCccccc--cchhHHHHHHHHHhhccccccccccHHHHhcc--CCEEEEcCCCccCCC
Confidence 3775 37999999 99999887 24 7788888887532 24689999987 99999999985 899
Q ss_pred CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcCCCCC
Q 011816 426 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQHFPGF 476 (477)
Q Consensus 426 t~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsGsp~~ 476 (477)
++++++.|+ ++||||+||||+ +||++++|++| |++++|||++++
T Consensus 279 ~~e~v~~m~---~~~iVfDLynP~--~t~~~~~A~~~--G~~ivatG~~ml 322 (439)
T 2dvm_A 279 KPQWIEKMN---EDAIVFPLANPV--PEILPEEAKKA--GARIVATGRSDY 322 (439)
T ss_dssp CHHHHTTSC---TTCEEEECCSSS--CSSCHHHHHHH--TCSEECBSCSSS
T ss_pred ChHHHHhcC---CCCEEEECCCCC--CcchHHHHHHc--CCeEEcCCCchh
Confidence 999999996 899999999999 89999999998 899999999875
No 8
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=99.08 E-value=1.5e-09 Score=113.72 Aligned_cols=168 Identities=11% Similarity=0.182 Sum_probs=125.3
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHHH---------------------HHHc-------CCCcee-
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELL---------------------AKYG-------TTHLVF- 303 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL---------------------~ryr-------~~~~~F- 303 (477)
.+-+||...+++.+.+ ..++|+.+| |-+..=...+- .||+ ..+|+|
T Consensus 112 ~~~~ey~~~~~~~~~~--~~~~p~~il---DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~ 186 (435)
T 3gvp_A 112 ESEDDFWWCIDRCVNV--EGWQPNMIL---DDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMN 186 (435)
T ss_dssp CCHHHHHHHHHHHHCB--TTBCCSEEE---ESSSHHHHHHHHHCHHHHHTCCEEEECCHHHHHHHTCC--CCCCCSCEEE
T ss_pred CCHHHHHHHHHHHHhc--cCCCCcEEE---ecchHHHHHHHHHhHHHHhhcceeEeccchhHHHHHHHHHcCCCCCCEEE
Confidence 4567888888876642 346677666 44443222221 3443 269999
Q ss_pred ---------ccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 304 ---------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 304 ---------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
+|+++||+.++++|+.++ ++..|.+.+++|+|+|..|.++|+.+.. .|+ +++++|.
T Consensus 187 vnds~tK~~fDn~yGt~~s~~~gi~ra---t~~~L~GktV~ViG~G~IGk~vA~~Lra-----~Ga-------~Viv~D~ 251 (435)
T 3gvp_A 187 VNDSVTKQKFDNLYCCRESILDGLKRT---TDMMFGGKQVVVCGYGEVGKGCCAALKA-----MGS-------IVYVTEI 251 (435)
T ss_dssp CTTCHHHHHHHTHHHHHHHHHHHHHHH---HCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECS
T ss_pred ecchhhhhhhhhhhhhHHHHHHHHHHh---hCceecCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 999999999999999765 6899999999999999999999999864 364 6888886
Q ss_pred CCcccCCCCCCCchhchhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCC
Q 011816 375 KGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSE 453 (477)
Q Consensus 375 ~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E 453 (477)
+.. +...|.. .-...+|.|+++. .|++|.+++..++++++.++.|. +..||+-.+++. .|
T Consensus 252 dp~------------ra~~A~~~G~~v~~Leeal~~--ADIVi~atgt~~lI~~e~l~~MK---~gailINvgrg~--~E 312 (435)
T 3gvp_A 252 DPI------------CALQACMDGFRLVKLNEVIRQ--VDIVITCTGNKNVVTREHLDRMK---NSCIVCNMGHSN--TE 312 (435)
T ss_dssp CHH------------HHHHHHHTTCEECCHHHHTTT--CSEEEECSSCSCSBCHHHHHHSC---TTEEEEECSSTT--TT
T ss_pred Chh------------hhHHHHHcCCEeccHHHHHhc--CCEEEECCCCcccCCHHHHHhcC---CCcEEEEecCCC--cc
Confidence 421 1111211 1113579999987 99999998888899999999997 789999999997 78
Q ss_pred CCHHHH
Q 011816 454 CTAEEA 459 (477)
Q Consensus 454 ~tpe~A 459 (477)
+..+..
T Consensus 313 Id~~~L 318 (435)
T 3gvp_A 313 IDVASL 318 (435)
T ss_dssp BTGGGG
T ss_pred CCHHHH
Confidence 887654
No 9
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=99.04 E-value=4.2e-10 Score=117.87 Aligned_cols=129 Identities=17% Similarity=0.190 Sum_probs=104.9
Q ss_pred CCCcee----------ccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcC
Q 011816 298 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (477)
Q Consensus 298 ~~~~~F----------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~ 367 (477)
..+|+| +|+++||+.++++|++. .++..|.+.+++|+|.|..|.++|+.+... |+
T Consensus 171 L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r---atg~~L~GktVgIiG~G~IG~~vA~~Lka~-----Ga------- 235 (436)
T 3h9u_A 171 LTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR---ATDVMIAGKTACVCGYGDVGKGCAAALRGF-----GA------- 235 (436)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH---HHCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------
T ss_pred CCCceEeechhhhhhhhhccccchHHHHHHHHH---hcCCcccCCEEEEEeeCHHHHHHHHHHHHC-----CC-------
Confidence 589999 89999999999999965 469999999999999999999999998653 63
Q ss_pred eEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 368 KICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 368 ~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++++|++. .+...|. ..-...+|.|+++. +|++|.+++..++++++.++.|. +..||+-+|
T Consensus 236 ~Viv~D~~p------------~~a~~A~~~G~~~~sL~eal~~--ADVVilt~gt~~iI~~e~l~~MK---~gAIVINvg 298 (436)
T 3h9u_A 236 RVVVTEVDP------------INALQAAMEGYQVLLVEDVVEE--AHIFVTTTGNDDIITSEHFPRMR---DDAIVCNIG 298 (436)
T ss_dssp EEEEECSCH------------HHHHHHHHTTCEECCHHHHTTT--CSEEEECSSCSCSBCTTTGGGCC---TTEEEEECS
T ss_pred EEEEECCCh------------hhhHHHHHhCCeecCHHHHHhh--CCEEEECCCCcCccCHHHHhhcC---CCcEEEEeC
Confidence 688888731 1111121 11123589999997 99999988888899999999996 789999999
Q ss_pred CCCCCCCCCHHHHh
Q 011816 447 NPTSQSECTAEEAY 460 (477)
Q Consensus 447 NPt~~~E~tpe~A~ 460 (477)
++. .|+.++...
T Consensus 299 Rg~--vEID~~~L~ 310 (436)
T 3h9u_A 299 HFD--TEIQVAWLK 310 (436)
T ss_dssp SSG--GGBCHHHHH
T ss_pred CCC--CccCHHHHH
Confidence 998 899998664
No 10
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=98.58 E-value=5.1e-08 Score=100.30 Aligned_cols=239 Identities=18% Similarity=0.230 Sum_probs=140.1
Q ss_pred CcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCC--ccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCc
Q 011816 166 EKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDE 243 (477)
Q Consensus 166 d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~--gmgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp 243 (477)
++..++++.+ .+.+|+|.++++..+|++|.+.. |..|+.+ ..+|. | +++|.+.+-
T Consensus 26 tP~~v~~L~~----~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~-~~~~~-a---------diil~vk~p-------- 82 (401)
T 1x13_A 26 TPKTVEQLLK----LGFTVAVESGAGQLASFDDKAFVQAGAEIVEG-NSVWQ-S---------EIILKVNAP-------- 82 (401)
T ss_dssp CHHHHHHHHH----TTCEEEEETTTTGGGTCCHHHHHHHTCEEECG-GGGGS-S---------SEEECSSCC--------
T ss_pred CHHHHHHHHH----CCCEEEEEECCCcccCCChHHHHHCCCEEecc-HHHhc-C---------CeEEEeCCC--------
Confidence 3455666654 35689999999999999999975 8899888 66776 1 577776531
Q ss_pred ccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCC-cccHHHHHHHHcCCCceec-cCCC----------chH
Q 011816 244 FYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA-NHNAFELLAKYGTTHLVFN-DDIQ----------GTA 311 (477)
Q Consensus 244 ~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~-~~~af~iL~ryr~~~~~Fn-DDiQ----------GTa 311 (477)
..+.++.+++ ...+|-+=..+ ++.+++-+.+ ..|++|+ +.+. .+.
T Consensus 83 ------------------~~~~i~~l~~---~~~li~~~~~~~d~~~~~al~~--~gI~v~~~e~v~~~~~a~~l~~l~~ 139 (401)
T 1x13_A 83 ------------------LDDEIALLNP---GTTLVSFIWPAQNPELMQKLAE--RNVTVMAMDSVPRISRAQSLDALSS 139 (401)
T ss_dssp ------------------CHHHHTTCCT---TCEEEECCCGGGCHHHHHHHHH--TTCEEEEGGGCCCSGGGGGGCHHHH
T ss_pred ------------------CHHHHHHhcC---CCcEEEEecCCCCHHHHHHHHH--CCCEEEEeehhhhhhhhcccchHHH
Confidence 1233333322 11222221111 3333333332 5677773 2222 455
Q ss_pred HHHHHHHHHHHHHhC----C----------CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 312 SVVLAGVVAALKLIG----G----------TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 312 aV~LAgll~Alr~~g----~----------~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
...+|| .+|++..+ + .+...+|+|+|+|.+|.++++++.. .|. +++++|++.-
T Consensus 140 ~a~~ag-~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~-----~Ga-------~V~v~D~~~~ 206 (401)
T 1x13_A 140 MANIAG-YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPE 206 (401)
T ss_dssp HHHHHH-HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCGG
T ss_pred HHHHHH-HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEcCCHH
Confidence 556665 44444432 2 2568899999999999999998754 262 6889998643
Q ss_pred ccCCCCCCCc------------hhchhhccccCC------CCCHHHHhcccCCcEEEeccCCC-----CCCCHHHHHHHH
Q 011816 378 IVSSRKDSLQ------------HFKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMA 434 (477)
Q Consensus 378 i~~~r~~~l~------------~~k~~~a~~~~~------~~~L~eav~~vkptvLIG~S~~~-----g~Ft~evv~~Ma 434 (477)
..... ..+. ..+..|++...+ ..+|.+.++. .|++|++...+ .++++++++.|.
T Consensus 207 ~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~--aDvVI~~~~~pg~~ap~li~~~~l~~mk 283 (401)
T 1x13_A 207 VKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKE--VDIIVTTALIPGKPAPKLITREMVDSMK 283 (401)
T ss_dssp GHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHH--CSEEEECCCCTTSCCCCCBCHHHHHTSC
T ss_pred HHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCC--CCEEEECCccCCCCCCeeeCHHHHhcCC
Confidence 21100 0000 000012111000 0147788876 99999995332 579999999996
Q ss_pred cCCCCcEEEEcCCCC-CCCCCC-HHH-HhcccCCcEEEE
Q 011816 435 SFNEKPLILALSNPT-SQSECT-AEE-AYTWSKVQTIIL 470 (477)
Q Consensus 435 ~~~erPIIFaLSNPt-~~~E~t-pe~-A~~~t~G~aifA 470 (477)
+..+|+-+|+|. ...|.+ +.+ .+. .+|-.|++
T Consensus 284 ---~g~vIVdva~~~Gg~v~~~~~~~p~~~-~~gv~i~g 318 (401)
T 1x13_A 284 ---AGSVIVDLAAQNGGNCEYTVPGEIFTT-ENGVKVIG 318 (401)
T ss_dssp ---TTCEEEETTGGGTCSBTTCCTTSEEEC-TTSCEEEC
T ss_pred ---CCcEEEEEcCCCCCCcCcccCCCceEE-ECCEEEEe
Confidence 688999999873 223443 333 122 35666663
No 11
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=98.20 E-value=4e-06 Score=89.08 Aligned_cols=132 Identities=15% Similarity=0.192 Sum_probs=101.6
Q ss_pred CCCcee----------ccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcC
Q 011816 298 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (477)
Q Consensus 298 ~~~~~F----------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~ 367 (477)
..+|+| +|+++||+..++.|+. |.++..|.+.+++|.|+|..|.+||+.+.. .|.
T Consensus 225 L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa-----~GA------- 289 (488)
T 3ond_A 225 LLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVVAGYGDVGKGCAAALKQ-----AGA------- 289 (488)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------
T ss_pred CCCceecccchhhhhHhhhhccccHHHHHHHH---HHcCCcccCCEEEEECCCHHHHHHHHHHHH-----CCC-------
Confidence 479999 7899999999999886 788999999999999999999999988765 363
Q ss_pred eEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 368 ~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+++++|++.. + ... .+...-...++.++++. .|+++-.++..++++.+.++.|. +..||+-.++
T Consensus 290 ~Viv~D~~~~----~---a~~----Aa~~g~dv~~lee~~~~--aDvVi~atG~~~vl~~e~l~~mk---~gaiVvNaG~ 353 (488)
T 3ond_A 290 RVIVTEIDPI----C---ALQ----ATMEGLQVLTLEDVVSE--ADIFVTTTGNKDIIMLDHMKKMK---NNAIVCNIGH 353 (488)
T ss_dssp EEEEECSCHH----H---HHH----HHHTTCEECCGGGTTTT--CSEEEECSSCSCSBCHHHHTTSC---TTEEEEESSS
T ss_pred EEEEEcCCHH----H---HHH----HHHhCCccCCHHHHHHh--cCEEEeCCCChhhhhHHHHHhcC---CCeEEEEcCC
Confidence 7888887421 0 100 01111123467777776 99999988888899999999996 7889999999
Q ss_pred CCCCCCCCHHHHhcc
Q 011816 448 PTSQSECTAEEAYTW 462 (477)
Q Consensus 448 Pt~~~E~tpe~A~~~ 462 (477)
+. .|+..++.-.|
T Consensus 354 ~~--~Ei~~~~l~~~ 366 (488)
T 3ond_A 354 FD--NEIDMLGLETH 366 (488)
T ss_dssp TT--TTBTHHHHHTS
T ss_pred CC--cccchHHHHHh
Confidence 85 78887765444
No 12
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=98.19 E-value=4.9e-06 Score=87.79 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=104.1
Q ss_pred CCCcee----------ccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcC
Q 011816 298 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (477)
Q Consensus 298 ~~~~~F----------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~ 367 (477)
..+|+| .|+..||+-.++.|+. |.+|..|...+++|+|.|..|.++|+.+.. .|+
T Consensus 207 L~~PvinVnds~tK~~fDn~yG~~eslvdgI~---Ratg~~L~GKTVgVIG~G~IGr~vA~~lra-----fGa------- 271 (464)
T 3n58_A 207 LPFPAINVNDSVTKSKFDNKYGCKESLVDGIR---RGTDVMMAGKVAVVCGYGDVGKGSAQSLAG-----AGA------- 271 (464)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------
T ss_pred CCCCEEeeccHhhhhhhhhhhcchHHHHHHHH---HhcCCcccCCEEEEECcCHHHHHHHHHHHH-----CCC-------
Confidence 479999 6778999999988885 567999999999999999999999998864 264
Q ss_pred eEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 368 KICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 368 ~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++++|.+.. ....|. ..-...+|.|+++. +|+++-+++..++++++.++.|. +..||.-.+
T Consensus 272 ~Viv~d~dp~------------~a~~A~~~G~~vv~LeElL~~--ADIVv~atgt~~lI~~e~l~~MK---~GAILINvG 334 (464)
T 3n58_A 272 RVKVTEVDPI------------CALQAAMDGFEVVTLDDAAST--ADIVVTTTGNKDVITIDHMRKMK---DMCIVGNIG 334 (464)
T ss_dssp EEEEECSSHH------------HHHHHHHTTCEECCHHHHGGG--CSEEEECCSSSSSBCHHHHHHSC---TTEEEEECS
T ss_pred EEEEEeCCcc------------hhhHHHhcCceeccHHHHHhh--CCEEEECCCCccccCHHHHhcCC---CCeEEEEcC
Confidence 6888875311 111111 11123479999987 99999988878899999999997 788998888
Q ss_pred CCCCCCCCCHHHH--------------hcccCCcEEE
Q 011816 447 NPTSQSECTAEEA--------------YTWSKVQTII 469 (477)
Q Consensus 447 NPt~~~E~tpe~A--------------~~~t~G~aif 469 (477)
... .|+..+.. |.+.+|+.|+
T Consensus 335 Rgd--vEID~~aL~~~~~~~ik~~v~~~~~~~g~~i~ 369 (464)
T 3n58_A 335 HFD--NEIQVAALRNLKWTNVKPQVDLIEFPDGKRLI 369 (464)
T ss_dssp SST--TTBTCGGGTTSEEEEEETTEEEEECTTSCEEE
T ss_pred CCC--cccCHHHHHhCccccccCCeeEEEeCCCCEEE
Confidence 876 45554433 4456787766
No 13
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=97.71 E-value=0.00062 Score=69.09 Aligned_cols=225 Identities=15% Similarity=0.152 Sum_probs=121.8
Q ss_pred cchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCC--ccccchhhHHHHHHhcCCCCCceeeEEeecCCC-----chhc
Q 011816 167 KGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPITVDVGTN-----NEQL 239 (477)
Q Consensus 167 ~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~--gmgI~~GKl~LY~a~gGI~P~~~lPI~LDvgTn-----ne~L 239 (477)
+..+.++.+ .+.+|+|.++++...|+.|.... |..|+.++..++ ++.| ++|.+.+- .++.
T Consensus 20 P~~v~~L~~----~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~---~~ad------iil~v~~p~~~~~~~~~ 86 (384)
T 1l7d_A 20 PEVVKKLVG----LGFEVIVEQGAGVGASITDDALTAAGATIASTAAQAL---SQAD------VVWKVQRPMTAEEGTDE 86 (384)
T ss_dssp HHHHHHHHH----TTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHH---SSCS------EEEEEECCCCGGGSCCG
T ss_pred HHHHHHHHh----CCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhh---cCCC------EEEEecCcccccCCHHH
Confidence 345555554 35789999999999999998764 778888877666 3333 66666532 1111
Q ss_pred ---c-cCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceeccCCCchHHHHH
Q 011816 240 ---L-KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVL 315 (477)
Q Consensus 240 ---L-~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~L 315 (477)
| ..-.+++.-+.- ++. +.++++.. -|- .++++|-+....+ ...+++|+ ....+
T Consensus 87 i~~l~~~~~~i~~~~~~-----~~~---~~~~~~~~-~gi-~~~~~e~~~~~~~-------~~~l~~l~------~~a~~ 143 (384)
T 1l7d_A 87 VALIKEGAVLMCHLGAL-----TNR---PVVEALTK-RKI-TAYAMELMPRISR-------AQSMDILS------SQSNL 143 (384)
T ss_dssp GGGSCTTCEEEEECCGG-----GCH---HHHHHHHH-TTC-EEEEGGGCCCSGG-------GGGGCHHH------HHHHH
T ss_pred HHhhccCCEEEEEeccc-----CCH---HHHHHHHH-CCC-EEEEecccccccc-------ccccchhh------HHHHH
Confidence 1 112222222221 111 11222222 111 1233322211000 00112222 11122
Q ss_pred H---HHHHHHHHhCC----------CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCC
Q 011816 316 A---GVVAALKLIGG----------TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 382 (477)
Q Consensus 316 A---gll~Alr~~g~----------~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r 382 (477)
| +++.+.+..++ .+...+++|+|+|.+|.++++.+.. .|. +++++|++.- |
T Consensus 144 ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~-----~Ga-------~V~~~d~~~~----~ 207 (384)
T 1l7d_A 144 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKR-----LGA-------VVMATDVRAA----T 207 (384)
T ss_dssp HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCST----T
T ss_pred HHHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHH----H
Confidence 3 55666666554 6788999999999999999988754 363 4899997532 1
Q ss_pred CCCCchhc-----------------hhhccccC------CCCCHHHHhcccCCcEEEecc---C--CCCCCCHHHHHHHH
Q 011816 383 KDSLQHFK-----------------KPWAHEHE------PVNNLLDAVKVIKPTILIGSS---G--VGRTFTKEVIEAMA 434 (477)
Q Consensus 383 ~~~l~~~k-----------------~~~a~~~~------~~~~L~eav~~vkptvLIG~S---~--~~g~Ft~evv~~Ma 434 (477)
.+.+...- -.|++... ....+.+.++. +|++|.++ + .+.+++++.++.|.
T Consensus 208 ~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~--aDvVi~~~~~pg~~~~~li~~~~l~~mk 285 (384)
T 1l7d_A 208 KEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTKMK 285 (384)
T ss_dssp HHHHHHTTCEECCC-----------------------CCHHHHHHHHHTT--CSEEEECCCCTTSCCCCCSCHHHHTTSC
T ss_pred HHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCC--CCEEEECCccCCCCCCeeeCHHHHhcCC
Confidence 00000000 01111100 00127777875 99999988 3 23468999999996
Q ss_pred cCCCCcEEEEcCCC
Q 011816 435 SFNEKPLILALSNP 448 (477)
Q Consensus 435 ~~~erPIIFaLSNP 448 (477)
+..+|+-+|-+
T Consensus 286 ---~g~vivdva~~ 296 (384)
T 1l7d_A 286 ---PGSVIIDLAVE 296 (384)
T ss_dssp ---TTCEEEETTGG
T ss_pred ---CCCEEEEEecC
Confidence 67899999954
No 14
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=97.46 E-value=9.6e-05 Score=76.85 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=78.1
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC------CC-------chhchhhc
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD------SL-------QHFKKPWA 394 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~------~l-------~~~k~~~a 394 (477)
.+...||+|+|+|.+|.++|+++... |. +++++|++.-......+ .+ .+-+..|+
T Consensus 187 ~v~~~kV~ViG~G~iG~~aa~~a~~l-----Ga-------~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya 254 (405)
T 4dio_A 187 TVPAAKIFVMGAGVAGLQAIATARRL-----GA-------VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYA 254 (405)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSTTHHHHHHHTTCEECCCCC-------------
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchh
Confidence 36789999999999999999988653 63 68999987532110000 00 00112244
Q ss_pred cccCC------CCCHHHHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCC-HHHHhc
Q 011816 395 HEHEP------VNNLLDAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN-PTSQSECT-AEEAYT 461 (477)
Q Consensus 395 ~~~~~------~~~L~eav~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~t-pe~A~~ 461 (477)
+...+ ..+|.++++. +|++|++... +.+||+++++.|. +.+||+-+|- |-...|.+ |.+-+.
T Consensus 255 ~e~s~~~~~~~~~~l~e~l~~--aDVVI~tvlipg~~ap~Lvt~emv~~Mk---~GsVIVDvA~d~GG~~e~t~~~~~~~ 329 (405)
T 4dio_A 255 KEMSGEYQVKQAALVAEHIAK--QDIVITTALIPGRPAPRLVTREMLDSMK---PGSVVVDLAVERGGNIEGAEAGKVTE 329 (405)
T ss_dssp ----CHHHHHHHHHHHHHHHT--CSEEEECCCCSSSCCCCCBCHHHHTTSC---TTCEEEETTGGGTCSBTTCCTTEEEE
T ss_pred hhcchhhhhhhHhHHHHHhcC--CCEEEECCcCCCCCCCEEecHHHHhcCC---CCCEEEEEeCCCCCCccccCCCCeEE
Confidence 32111 2479999997 9999998533 3589999999997 8999999994 33334554 223343
Q ss_pred ccCCcEEEE
Q 011816 462 WSKVQTIIL 470 (477)
Q Consensus 462 ~t~G~aifA 470 (477)
.+|-.+++
T Consensus 330 -~~GV~~~g 337 (405)
T 4dio_A 330 -VGGVRIVG 337 (405)
T ss_dssp -ETTEEEEE
T ss_pred -ECCEEEEE
Confidence 36655554
No 15
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=97.17 E-value=0.00036 Score=72.01 Aligned_cols=103 Identities=21% Similarity=0.191 Sum_probs=67.0
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC------CCc---hhchhhcccc--
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD------SLQ---HFKKPWAHEH-- 397 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~------~l~---~~k~~~a~~~-- 397 (477)
+...|++|+|+|.+|..+|+.+... |. +++++|++.-....-.+ .++ .....|++..
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~l-----Ga-------~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~ 249 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRL-----GA-------KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSE 249 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHH-----TC-------EEEEECSSGGGHHHHHHTTCEECCCC-------------CH
T ss_pred cCCCEEEEECchHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhH
Confidence 5789999999999999999988653 63 68999986421000000 000 0001122110
Q ss_pred ----CCCCCHHHHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 398 ----EPVNNLLDAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 398 ----~~~~~L~eav~~vkptvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
....+|.++++. .|++|++... +.+||+++++.|. +..+|+-+|=+
T Consensus 250 ~~~~~~~~~l~e~l~~--aDIVI~tv~iPg~~ap~Lvt~emv~~Mk---pGsVIVDvA~d 304 (381)
T 3p2y_A 250 AERAQQQQALEDAITK--FDIVITTALVPGRPAPRLVTAAAATGMQ---PGSVVVDLAGE 304 (381)
T ss_dssp HHHHHHHHHHHHHHTT--CSEEEECCCCTTSCCCCCBCHHHHHTSC---TTCEEEETTGG
T ss_pred HHHhhhHHHHHHHHhc--CCEEEECCCCCCcccceeecHHHHhcCC---CCcEEEEEeCC
Confidence 112368899987 9999997433 3579999999997 78999999854
No 16
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=97.08 E-value=0.0031 Score=61.37 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
.+-+|+=.++..++...+..+.+.+++|+|+|..|..+|+.+.. .|. +++.+|+.. .+ +..
T Consensus 133 ~~~svae~a~~~~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~-----~G~-------~V~~~dr~~----~~---~~~ 193 (293)
T 3d4o_A 133 NSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAA-----LGA-------KVKVGARES----DL---LAR 193 (293)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESSH----HH---HHH
T ss_pred ccHhHHHHHHHHHHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHh-----CCC-------EEEEEECCH----HH---HHH
Confidence 34455555666666777889999999999999999999998864 253 688888742 11 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHHHHh
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEAY 460 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~E~tpe~A~ 460 (477)
.+..-++. -...+|.++++. .|++|-... .+.++++.++.|. +..+++=+| +|. ++..+.|.
T Consensus 194 ~~~~g~~~-~~~~~l~~~l~~--aDvVi~~~p-~~~i~~~~l~~mk---~~~~lin~ar~~~---~~~~~~a~ 256 (293)
T 3d4o_A 194 IAEMGMEP-FHISKAAQELRD--VDVCINTIP-ALVVTANVLAEMP---SHTFVIDLASKPG---GTDFRYAE 256 (293)
T ss_dssp HHHTTSEE-EEGGGHHHHTTT--CSEEEECCS-SCCBCHHHHHHSC---TTCEEEECSSTTC---SBCHHHHH
T ss_pred HHHCCCee-cChhhHHHHhcC--CCEEEECCC-hHHhCHHHHHhcC---CCCEEEEecCCCC---CCCHHHHH
Confidence 11000010 012468888876 999997664 5799999999885 677888888 454 45565554
No 17
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}
Probab=97.03 E-value=0.032 Score=58.89 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=129.4
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH--HHHHHHHc---CCCc-ee----------ccCCCchHHHHHH
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYG---TTHL-VF----------NDDIQGTASVVLA 316 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr---~~~~-~F----------nDDiQGTaaV~LA 316 (477)
.+-.|...|...||..+.+.+||..=|-=+|++..-. --+.+.|+ ...+ |+ ..--.-||-=+.-
T Consensus 145 ~s~~el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~~ 224 (456)
T 3r3j_A 145 KSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVY 224 (456)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHhhcCcccceecCCcccccCCCCCCcccchHHHH
Confidence 3455677777889999988889998889999986321 12344554 2221 11 1222346777777
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchh----
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP---- 392 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~---- 392 (477)
++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+.+.|++|-|++.. .++..+..
T Consensus 225 ~~~~~~~~~g~~l~g~~VaVQG~GnVG~~aa~~L~e~-----Ga------kvVavsD~~G~iyd~~--Gld~~~l~~~~~ 291 (456)
T 3r3j_A 225 FAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEK-----GA------IVLTMSDSNGYILEPN--GFTKEQLNYIMD 291 (456)
T ss_dssp HHHHHHHTTTCCSTTCCEEEECCSHHHHHHHHHHHHH-----TC------CBCCEECSSCEEECTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCcEECCC--CCCHHHHHHHHH
Confidence 7888888889999999999999999999999998764 53 3345899999998764 34432211
Q ss_pred -----------hccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHH
Q 011816 393 -----------WAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEE 458 (477)
Q Consensus 393 -----------~a~~~~~~~--~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~ 458 (477)
|+...+... +-.+ +-.++.||||=+.. ++.+|++-++.+-+ +.-+||.--+| |++ +| +++
T Consensus 292 ~k~~~~~~v~~~~~~~~~a~~v~~~~-i~~~~~DI~iPcA~-~~~I~~~na~~l~~-~~ak~V~EgAN~p~T-~e--A~~ 365 (456)
T 3r3j_A 292 IKNNQRLRLKEYLKYSKTAKYFENQK-PWNIPCDIAFPCAT-QNEINENDADLFIQ-NKCKMIVEGANMPTH-IK--ALH 365 (456)
T ss_dssp HHHTSCCCGGGGGGTCSSCEEECSCC-GGGSCCSEEEECSC-TTCBCHHHHHHHHH-HTCCEEECCSSSCBC-TT--HHH
T ss_pred HHHhcCcchhhhhhcCCCceEeCCcc-ccccCccEEEeCCC-ccchhhHHHHHHHh-cCCeEEEecCCCCCC-HH--HHH
Confidence 111001100 1111 23467999998877 56999999999843 24689999999 764 55 566
Q ss_pred HhcccCC
Q 011816 459 AYTWSKV 465 (477)
Q Consensus 459 A~~~t~G 465 (477)
.+. .+|
T Consensus 366 iL~-~rG 371 (456)
T 3r3j_A 366 KLK-QNN 371 (456)
T ss_dssp HHH-TTT
T ss_pred HHH-HCC
Confidence 665 345
No 18
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=96.94 E-value=0.015 Score=60.85 Aligned_cols=187 Identities=19% Similarity=0.186 Sum_probs=131.0
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcc-cHHH-HHHHHc---CC--Ccee----------ccCCCchHHHHH
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH-NAFE-LLAKYG---TT--HLVF----------NDDIQGTASVVL 315 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~-~af~-iL~ryr---~~--~~~F----------nDDiQGTaaV~L 315 (477)
.+-.|-..|...|++++.+.-||+.-|-=+|++.. .-.. +.+.|+ .. -.++ .|--.-||-=+.
T Consensus 126 ~s~~El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~ 205 (424)
T 3k92_A 126 MSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVT 205 (424)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHHH
Confidence 34556677889999999999899888888999763 2222 445663 21 1222 344456888888
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc-hhhc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWA 394 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-~~~a 394 (477)
.++-.+++..|.+|++.||+|.|.|..|...|++|.+. |. +-+-+.|++|-|++.. .|+... +.+.
T Consensus 206 ~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~aa~~l~e~-----Ga------kVVavsD~~G~iyd~~--GlD~~~l~~~~ 272 (424)
T 3k92_A 206 ICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDA-----GA------KVIGISDANGGLYNPD--GLDIPYLLDKR 272 (424)
T ss_dssp HHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHH-----TC------EEEEEECSSCEEECTT--CCCHHHHHHHC
T ss_pred HHHHHHHHHcCCCcccCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCcEECCC--CCCHHHHHHHH
Confidence 88999999999999999999999999999999998764 53 4467999999999764 343322 1222
Q ss_pred cccC-------CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 395 HEHE-------PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 395 ~~~~-------~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
.... ..-+-.+ +-.++.||||=++.+ +.+|++-++.+ .-.+|.--+| |++ +| +++.+.
T Consensus 273 ~~~g~i~~~~a~~~~~~~-i~~~~~DIliPcA~~-n~I~~~~a~~l----~ak~V~EgAN~p~t-~e--A~~iL~ 338 (424)
T 3k92_A 273 DSFGMVTNLFTDVITNEE-LLEKDCDILVPAAIS-NQITAKNAHNI----QASIVVERANGPTT-ID--ATKILN 338 (424)
T ss_dssp CSSSCCGGGCSCCBCHHH-HHHSCCSEEEECSCS-SCBCTTTGGGC----CCSEEECCSSSCBC-HH--HHHHHH
T ss_pred HHhCCCCCCCcEEecCcc-ceeccccEEeecCcc-cccChhhHhhc----CceEEEcCCCCCCC-HH--HHHHHH
Confidence 1111 1112233 345689999988875 69999998887 5789998998 663 33 345554
No 19
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=96.91 E-value=0.054 Score=57.14 Aligned_cols=198 Identities=16% Similarity=0.124 Sum_probs=132.7
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH-----HHHHHHHcCC-Ccee----------ccCCCchHHHHHH
Q 011816 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA-----FELLAKYGTT-HLVF----------NDDIQGTASVVLA 316 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a-----f~iL~ryr~~-~~~F----------nDDiQGTaaV~LA 316 (477)
.+-.|-..|...||..+.+..||+.-|--.|+..--. +...++++.. -.|| .+.-.-||-=+.-
T Consensus 141 ~s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~~~em~~~~~~y~~~~~~~~~v~TGk~~~~GGs~~r~~aTg~Gv~~ 220 (450)
T 4fcc_A 141 KSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVY 220 (450)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTCCSCCCSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhheecCCCCCCccceeecchhhhhhhhhhhhccCCCceeecCCCcccCCCCCCCCceeeeHHH
Confidence 4566778889999999999999999999999975322 2333444432 2233 2333447877788
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~ 396 (477)
++-.+++..|.+|+..||+|-|.|..|...|+.|.+. |. +=|-+-|++|-|++.. .++..+.....+
T Consensus 221 ~~~~~~~~~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~-----Ga------kvVavsD~~G~i~d~~--Gid~e~l~~l~e 287 (450)
T 4fcc_A 221 FTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEF-----GA------RVITASDSSGTVVDES--GFTKEKLARLIE 287 (450)
T ss_dssp HHHHHHHHTTCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEEETTEEEECTT--CCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCEEEEeCCChHHHHHHHHHHhc-----CC------eEEEEecCCceEEeCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999998763 63 4566789999998754 354433211110
Q ss_pred --cCCCCCHHH-------------HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 011816 397 --HEPVNNLLD-------------AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (477)
Q Consensus 397 --~~~~~~L~e-------------av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~ 460 (477)
......+.+ .+-.++.|||+=+..+ +.+|++-++.+.+. .-.+|.--+| |++ +| +++.+
T Consensus 288 ~k~~~~g~v~~~~~~~g~~~~~~~~i~~~~~DI~iPcAl~-~~I~~~~a~~L~a~-g~k~IaEgAN~p~t-~e--A~~iL 362 (450)
T 4fcc_A 288 IKSSRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQ-NELDVDAAHQLIAN-GVKAVAEGANMPTT-IE--ATELF 362 (450)
T ss_dssp HHTSTTCCHHHHHHHHTCEEEETCCGGGSCCSEEEECSCT-TCBCHHHHHHHHHT-TCCEEECCSSSCBC-HH--HHHHH
T ss_pred HhcccCCccccccccCCcEEecCcccccCCccEEeecccc-ccccHHHHHHHHhc-CceEEecCCCCCCC-HH--HHHHH
Confidence 000011111 1234679999988775 59999999999632 2357887788 653 33 34555
Q ss_pred cccCCcEEEE
Q 011816 461 TWSKVQTIIL 470 (477)
Q Consensus 461 ~~t~G~aifA 470 (477)
. .+| ++|+
T Consensus 363 ~-~rG-Il~~ 370 (450)
T 4fcc_A 363 Q-QAG-VLFA 370 (450)
T ss_dssp H-HTT-CEEE
T ss_pred H-HCC-CEEE
Confidence 4 244 4443
No 20
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=96.90 E-value=0.018 Score=60.08 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=127.7
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH--HHHHHHHc---CC--Ccee----------ccCCCchHHHHHH
Q 011816 254 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYG---TT--HLVF----------NDDIQGTASVVLA 316 (477)
Q Consensus 254 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr---~~--~~~F----------nDDiQGTaaV~LA 316 (477)
+-.|-..|...|++++.+.-||..-|-=+|++..-. --+.+.|+ .. -.++ .+.-.-||-=+.-
T Consensus 124 s~~El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~ 203 (419)
T 3aoe_E 124 SPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALL 203 (419)
T ss_dssp CHHHHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHHH
Confidence 445667788999999999999999999999987421 22455552 11 1222 2333457777777
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccCCcccCCCCCCCchhc-hhhc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFK-KPWA 394 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k-~~~a 394 (477)
++-.+++..|.+|++.||+|.|.|..|...|++|.+ .|. +++ +.|++|-|++... ++..+ +.+.
T Consensus 204 ~~~~~~~~~g~~l~gk~vaVqG~GnVG~~~a~~L~~-----~Ga-------kVVavsD~~G~i~dp~G--ld~~~l~~~~ 269 (419)
T 3aoe_E 204 VLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAER-----LGM-------RVVAVATSMGGMYAPEG--LDVAEVLSAY 269 (419)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEEETTEEEECTTC--CCHHHHHHHH
T ss_pred HHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEEEcCCCeEECCCC--CCHHHHHHHH
Confidence 888889999999999999999999999999998865 353 566 9999999988643 43322 1122
Q ss_pred cccCCCC----CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 395 HEHEPVN----NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 395 ~~~~~~~----~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
....... +-.+ +-.++.|||+=++. ++.+|++-.+.+ .-.||.--+| |++ +| +++.+.
T Consensus 270 ~~~g~v~~~~~~~~e-~~~~~~DVliP~A~-~n~i~~~~A~~l----~ak~V~EgAN~p~t-~~--A~~~L~ 332 (419)
T 3aoe_E 270 EATGSLPRLDLAPEE-VFGLEAEVLVLAAR-EGALDGDRARQV----QAQAVVEVANFGLN-PE--AEAYLL 332 (419)
T ss_dssp HHHSSCSCCCBCTTT-GGGSSCSEEEECSC-TTCBCHHHHTTC----CCSEEEECSTTCBC-HH--HHHHHH
T ss_pred HhhCCcceeeccchh-hhccCceEEEeccc-ccccccchHhhC----CceEEEECCCCcCC-HH--HHHHHH
Confidence 1111110 0112 34468999998876 569999999888 4679999999 764 44 445554
No 21
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=96.68 E-value=0.029 Score=59.00 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=127.2
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcc--cHHHHHHHHc---CC--Ccee----------ccCCCchHHHHHH
Q 011816 254 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH--NAFELLAKYG---TT--HLVF----------NDDIQGTASVVLA 316 (477)
Q Consensus 254 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr---~~--~~~F----------nDDiQGTaaV~LA 316 (477)
+-.|-..|...|++++.+.-||..-|-=+|++.. .---+.+.|+ .. -.++ ++.-.-||-=+.-
T Consensus 141 s~~Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~~ 220 (440)
T 3aog_A 141 SPGELERLTRRYTSEIGILLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFI 220 (440)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHHH
Confidence 4456677889999999999998888888999874 1122455563 11 1222 3333457766777
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccCCcccCCCCCCCchhc-hhhc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFK-KPWA 394 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k-~~~a 394 (477)
++-.+++..|.+|++.||+|.|.|..|...|++|.+. |. +++ +.|++|-|++... ++... ..+.
T Consensus 221 ~~~~~~~~~g~~l~g~~vaVqGfGnVG~~~a~~L~e~-----Ga-------kvVavsD~~G~i~dp~G--ld~~~l~~~~ 286 (440)
T 3aog_A 221 TAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDH-----GA-------RVVAVQDHTGTVYNEAG--IDPYDLLRHV 286 (440)
T ss_dssp HHHHHHHHHTCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEECSSCEEECTTC--CCHHHHHHHH
T ss_pred HHHHHHHhcCCCccCCEEEEeccCHHHHHHHHHHHHC-----CC-------EEEEEEcCCcEEECCCC--CCHHHHHHHH
Confidence 7888899999999999999999999999999998763 53 455 9999999988653 32221 1111
Q ss_pred cccCC--------CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 395 HEHEP--------VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 395 ~~~~~--------~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
..... .-+-.+ +-.++.||||=++. ++.+|.+-++.+ .-.+|.--+| |++ +| +++.+.
T Consensus 287 ~~~g~i~~y~~a~~i~~~e-i~~~~~DIlvPcA~-~n~i~~~na~~l----~ak~VvEgAN~p~t-~e--A~~iL~ 353 (440)
T 3aog_A 287 QEFGGVRGYPKAEPLPAAD-FWGLPVEFLVPAAL-EKQITEQNAWRI----RARIVAEGANGPTT-PA--ADDILL 353 (440)
T ss_dssp HHTSSSTTCTTSEECCHHH-HTTCCCSEEEECSS-SSCBCTTTGGGC----CCSEEECCSSSCBC-HH--HHHHHH
T ss_pred HhcCCcccCCCceEcCchh-hhcCCCcEEEecCC-cCccchhhHHHc----CCcEEEecCccccC-HH--HHHHHH
Confidence 11110 012334 44578999998877 568999988887 5678888888 764 44 445554
No 22
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=96.45 E-value=0.0066 Score=60.55 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++..++-.+.+|+..++|++|+|. .|..+|.+|... |. .+.+++|+
T Consensus 141 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-----gA-------tVtv~hs~-------------- 194 (285)
T 3l07_A 141 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA-----KA-------TVTTCHRF-------------- 194 (285)
T ss_dssp CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT--------------
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------eEEEEeCC--------------
Confidence 3567788999999999999999999999986 899999998752 53 57777653
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCC---CCCCCHHHHhc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTS---QSECTAEEAYT 461 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~---~~E~tpe~A~~ 461 (477)
..+|.+.++. +|++|...+.++.++.++|+ +.-+|+=++ ||.. --.+.+|++.+
T Consensus 195 ----------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvgi~~~~g~l~GDVdf~~v~~ 252 (285)
T 3l07_A 195 ----------TTDLKSHTTK--ADILIVAVGKPNFITADMVK------EGAVVIDVGINHVDGKIVGDVDFAAVKD 252 (285)
T ss_dssp ----------CSSHHHHHTT--CSEEEECCCCTTCBCGGGSC------TTCEEEECCCEEETTEEECSBCHHHHTT
T ss_pred ----------chhHHHhccc--CCEEEECCCCCCCCCHHHcC------CCcEEEEecccCcCCceecCccHHHHHh
Confidence 1368899987 99999999999999999984 567877775 4431 03466677654
No 23
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=96.43 E-value=0.0055 Score=61.57 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=79.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+-.-+|-.|++-.++..+.+++..++||+|+| ..|.-+|.++... | ..+.+++++
T Consensus 143 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-----g-------AtVtv~hs~------------ 198 (301)
T 1a4i_A 143 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWN-----N-------ATVTTCHSK------------ 198 (301)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----T-------CEEEEECTT------------
T ss_pred CccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhC-----C-------CeEEEEECC------------
Confidence 44457888899999999999999999999999 5799999988652 4 358888743
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
..+|.+.++. +|++|+..+.++.+|+++|+ +.-+|+=++-|
T Consensus 199 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVgi~ 239 (301)
T 1a4i_A 199 ------------TAHLDEEVNK--GDILVVATGQPEMVKGEWIK------PGAIVIDCGIN 239 (301)
T ss_dssp ------------CSSHHHHHTT--CSEEEECCCCTTCBCGGGSC------TTCEEEECCCB
T ss_pred ------------cccHHHHhcc--CCEEEECCCCcccCCHHHcC------CCcEEEEccCC
Confidence 1468999987 99999999999999999985 56788888765
No 24
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=96.33 E-value=0.067 Score=56.70 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=124.2
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH--HHHHHHHc---CC-Ccee----------ccCCCchHHHHHHH
Q 011816 254 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYG---TT-HLVF----------NDDIQGTASVVLAG 317 (477)
Q Consensus 254 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr---~~-~~~F----------nDDiQGTaaV~LAg 317 (477)
+-.|-..|...||..+.+..||..=|-=+|++..-. --+.+.|+ .. -.|+ .++-.-||-=+.-+
T Consensus 159 S~~El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~~y~~~~~~~~gvvTGKp~~~GGs~~r~~aTg~Gv~~~ 238 (470)
T 2bma_A 159 SDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYF 238 (470)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHHHHHHHHCCCSCSSSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHHHHHHhcCCcccEEeCCCccCCCCCCccccchHHHHHH
Confidence 345566777789999998889998888999986321 12345554 21 0111 12223466666667
Q ss_pred HHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccCCcccCCCCCCCchhc------
Q 011816 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFK------ 390 (477)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k------ 390 (477)
+-.+++..|.+|+..||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .++...
T Consensus 239 ~~~~l~~~G~~l~g~~vaVqG~GnVG~~~a~~L~~~-----Ga-------kvVavsD~~G~i~dp~--Gid~edl~~l~~ 304 (470)
T 2bma_A 239 VLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHL-----NV-------KVLTLSDSNGYVYEPN--GFTHENLEFLID 304 (470)
T ss_dssp HHHHHHTTTCCGGGCEEEEECSSHHHHHHHHHHHHT-----TC-------EECEEEETTEEEECSS--CCCHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEEeCCceEECCC--CCCHHHHHHHHH
Confidence 788888899999999999999999999999998753 53 455 899999888754 343221
Q ss_pred ---------hhhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHH
Q 011816 391 ---------KPWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEE 458 (477)
Q Consensus 391 ---------~~~a~~~~~~~--~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~ 458 (477)
..|+...+... +-.+.. .++.||||=+.. ++.+|++-++.+-+ +.-.+|.--+| |++ +|. ++
T Consensus 305 ~k~~~~g~v~~~~~~~~~a~~v~~~~~~-~~~~DI~iPcA~-~~~I~~~na~~l~~-~~ak~V~EgAN~p~T-~eA--~~ 378 (470)
T 2bma_A 305 LKEEKKGRIKEYLNHSSTAKYFPNEKPW-GVPCTLAFPCAT-QNDVDLDQAKLLQK-NGCILVGEGANMPST-VDA--IN 378 (470)
T ss_dssp HHTTTTCCGGGGGGTCSSCEECSSCCTT-SSCCSEEEECSS-TTCBCSHHHHHHHH-TTCCEEECCSSSCBC-HHH--HH
T ss_pred HHHhcCCcHHHHHhhcCCcEEecCcCee-ecCccEEEeccc-cCcCCHHHHHHHHh-cCcEEEEeCCCCCCC-HHH--HH
Confidence 12221100000 001222 468999998886 56999999999954 35679999999 653 443 45
Q ss_pred Hhc
Q 011816 459 AYT 461 (477)
Q Consensus 459 A~~ 461 (477)
.+.
T Consensus 379 ~L~ 381 (470)
T 2bma_A 379 LFK 381 (470)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 25
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=96.26 E-value=0.0099 Score=59.28 Aligned_cols=108 Identities=17% Similarity=0.249 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
-.-+|-.|++..++..+.+|+..++|++|+|. .|..+|.+|... |. .+.+++++
T Consensus 139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~-----gA-------tVtv~h~~------------- 193 (285)
T 3p2o_A 139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA-----GA-------TVSVCHIK------------- 193 (285)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT-------------
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHC-----CC-------eEEEEeCC-------------
Confidence 34578888999999999999999999999876 899999998752 53 57788752
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCCC----CCCCHHHHhc
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTSQ----SECTAEEAYT 461 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~----~E~tpe~A~~ 461 (477)
..+|.+.++. +|++|...+.++.++.++|+ +.-+|+=++ ||... --+.++++.+
T Consensus 194 -----------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVgi~~~~~gkl~GDVdf~~v~~ 252 (285)
T 3p2o_A 194 -----------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVGINRLESGKIVGDVDFEEVSK 252 (285)
T ss_dssp -----------CSCHHHHHTT--CSEEEECSSCTTCBCGGGSC------TTEEEEECCCEECTTSCEECSBCHHHHTT
T ss_pred -----------chhHHHHhhc--CCEEEECCCCCCcCCHHHcC------CCeEEEEeccCcccCCCEeccccHHHHHh
Confidence 1368899987 99999999999999999984 566777664 55421 3456777654
No 26
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=96.22 E-value=0.042 Score=57.37 Aligned_cols=186 Identities=15% Similarity=0.223 Sum_probs=120.0
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCccc--HHHHHHHHc---CCC---cee----------ccCCCchHHHHH
Q 011816 254 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYG---TTH---LVF----------NDDIQGTASVVL 315 (477)
Q Consensus 254 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~iL~ryr---~~~---~~F----------nDDiQGTaaV~L 315 (477)
+-.|-..|...|++++.+.-||..-|-=+|++..- ---+.+.|+ ... .++ .+.-.-||-=+.
T Consensus 117 s~~el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~ 196 (421)
T 2yfq_A 117 SERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVA 196 (421)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHHH
Confidence 44566778899999999999999999999999742 123455663 211 222 222334666666
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccC-----CcccCCCCCCCchh
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSK-----GLIVSSRKDSLQHF 389 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~-----GLi~~~r~~~l~~~ 389 (477)
-++-.+++..|.+|+..||+|.|.|..|...|++|.+ .|. +++ +.|++ |-|++... ++..
T Consensus 197 ~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~~-----~Ga-------kvVavsD~~~~~~~G~i~d~~G--ld~~ 262 (421)
T 2yfq_A 197 VVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIER-----QGG-------KVCAIAEWDRNEGNYALYNENG--IDFK 262 (421)
T ss_dssp HHHHHHHHHTTCCGGGSCEEEECCSHHHHHHHHHHHH-----TTC-------CEEECCBCCSSSCSBCCBCSSC--CCHH
T ss_pred HHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEEEecCCCccceEEECCCC--CCHH
Confidence 7778888999999999999999999999999999875 363 455 89999 99998653 4322
Q ss_pred c-hhhccccCCC------CCH-HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 011816 390 K-KPWAHEHEPV------NNL-LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (477)
Q Consensus 390 k-~~~a~~~~~~------~~L-~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~ 460 (477)
. ..+......+ ..+ .+.+-.++.||||=++. ++.+|++-.+.+ ...+|.--+| |++ +| +++.+
T Consensus 263 ~l~~~~~~~g~i~~~~~a~~i~~~~~~~~~~DIliP~A~-~n~i~~~~A~~l----~ak~VvEgAN~P~t-~e--a~~il 334 (421)
T 2yfq_A 263 ELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAAL-ENVITGERAKTI----NAKLVCEAANGPTT-PE--GDKVL 334 (421)
T ss_dssp HHHHHHHHHCC---------------------CEEECSC-SSCSCHHHHTTC----CCSEEECCSSSCSC-HH--HHHHH
T ss_pred HHHHHHHhcCCcccCCCceEeCccchhcCCccEEEEcCC-cCcCCcccHHHc----CCeEEEeCCccccC-HH--HHHHH
Confidence 1 1111111100 101 12234468999998766 569999998887 4678888888 663 44 44555
Q ss_pred c
Q 011816 461 T 461 (477)
Q Consensus 461 ~ 461 (477)
+
T Consensus 335 ~ 335 (421)
T 2yfq_A 335 T 335 (421)
T ss_dssp H
T ss_pred H
Confidence 5
No 27
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=96.20 E-value=0.15 Score=53.08 Aligned_cols=186 Identities=19% Similarity=0.197 Sum_probs=124.4
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCccc--HHHHHHHHc---CC--Cceec----------cCCCchHHHHHH
Q 011816 254 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYG---TT--HLVFN----------DDIQGTASVVLA 316 (477)
Q Consensus 254 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~iL~ryr---~~--~~~Fn----------DDiQGTaaV~LA 316 (477)
+-+|-..+...|++++.+.-||..-|-=+|++..- ---+.+.|+ +. ..++- +.-.-||-=+.-
T Consensus 115 s~~e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~ 194 (415)
T 2tmg_A 115 SRRELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKV 194 (415)
T ss_dssp CHHHHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHHH
Confidence 34566778899999999988888888889998642 112344552 21 12232 222346666666
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccCCcccCCCCCCCchhc-hhhc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFK-KPWA 394 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k-~~~a 394 (477)
++-.+++..|.+++..||+|.|.|..|...|++|.+. .|. +++ +.|++|-+++... ++... ..+.
T Consensus 195 ~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~e~----~Ga-------kvVavsD~~G~i~dp~G--ld~~~l~~~~ 261 (415)
T 2tmg_A 195 CAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQE----LGS-------KVVAVSDSRGGIYNPEG--FDVEELIRYK 261 (415)
T ss_dssp HHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHT----TCC-------EEEEEECSSCEEECTTC--CCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHHHh----cCC-------EEEEEEeCCCeEECCCC--CCHHHHHHHH
Confidence 7778888899999999999999999999999988650 253 455 8999999888642 43321 1222
Q ss_pred cccCCC--------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 395 HEHEPV--------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 395 ~~~~~~--------~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
.....+ -+-.+ +-.++.||||=++. ++..|++-.+.+ .-.+|.--+| |++ +| +++.+.
T Consensus 262 ~~~g~l~~y~~a~~~~~~e-il~~~~DIliP~A~-~n~i~~~~a~~l----~ak~V~EgAN~p~t-~~--a~~~l~ 328 (415)
T 2tmg_A 262 KEHGTVVTYPKGERITNEE-LLELDVDILVPAAL-EGAIHAGNAERI----KAKAVVEGANGPTT-PE--ADEILS 328 (415)
T ss_dssp HHSSCSTTCSSSEEECHHH-HTTCSCSEEEECSS-TTSBCHHHHTTC----CCSEEECCSSSCBC-HH--HHHHHH
T ss_pred HhhCCcccCCCceEcCchh-hhcCCCcEEEecCC-cCccCcccHHHc----CCeEEEeCCCcccC-HH--HHHHHH
Confidence 111110 12234 45578999998776 568999988887 4678888888 663 44 445555
No 28
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=96.18 E-value=0.0099 Score=59.03 Aligned_cols=107 Identities=10% Similarity=0.215 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+-.-+|-.|++..++..+ |+..++|++|+|. .|..+|.++... |. .+.+++++
T Consensus 130 ~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~-----gA-------tVtv~~~~------------ 183 (276)
T 3ngx_A 130 FLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNR-----NY-------TVSVCHSK------------ 183 (276)
T ss_dssp SSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT------------
T ss_pred CCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHC-----CC-------eEEEEeCC------------
Confidence 334578889999999998 9999999999985 899999998752 53 57788752
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC-CCC--CCCCHHHHhc
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP-TSQ--SECTAEEAYT 461 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP-t~~--~E~tpe~A~~ 461 (477)
..+|.+.++. +|++|...+.++.+++++++ +.-+|+=++ || ..+ -.+.+|++.+
T Consensus 184 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvgi~~~~gkl~GDVdf~~v~~ 241 (276)
T 3ngx_A 184 ------------TKDIGSMTRS--SKIVVVAVGRPGFLNREMVT------PGSVVIDVGINYVNDKVVGDANFEDLSE 241 (276)
T ss_dssp ------------CSCHHHHHHH--SSEEEECSSCTTCBCGGGCC------TTCEEEECCCEEETTEEECSBCHHHHHT
T ss_pred ------------cccHHHhhcc--CCEEEECCCCCccccHhhcc------CCcEEEEeccCccCCceeccccHHHHhh
Confidence 1468899998 99999999999999999983 567888775 44 111 2566777655
No 29
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=96.11 E-value=0.01 Score=57.99 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=91.2
Q ss_pred HHHHHHHHH-HhcCCCeeeeeecCCcccHHHHHHHHcC--------CCceeccC-CCchHHHHHHHHHHH-HHHhCCCCc
Q 011816 262 LDEFMSAVK-QNYGEKVLIQFEDFANHNAFELLAKYGT--------THLVFNDD-IQGTASVVLAGVVAA-LKLIGGTLA 330 (477)
Q Consensus 262 idefv~av~-~~fGp~~lIq~EDf~~~~af~iL~ryr~--------~~~~FnDD-iQGTaaV~LAgll~A-lr~~g~~l~ 330 (477)
+.++++.++ ..|++ ++.--=-...+++++++... +..++.|+ ..|.-.= -.|++.+ |+..|.+++
T Consensus 44 l~~~~~~~~~~~~~G---~nVTiP~K~~v~~~~d~l~~~A~~iGAvNTv~~~~g~l~G~NTD-~~G~~~~lL~~~~~~l~ 119 (272)
T 3pwz_A 44 FEAQVLQFRSEGGKG---MNITAPFKLRAFELADRRSERAQLARAANALKFEDGRIVAENFD-GIGLLRDIEENLGEPLR 119 (272)
T ss_dssp HHHHHHHHHHTTCCE---EEECTTCHHHHHHHCSEECHHHHHHTCCSEEEEETTEEEEECCH-HHHHHHHHHTTSCCCCT
T ss_pred HHHHHHHHhhCCCCE---EEECchhHHHHHHHHhhCCHHHHHhCccceEEccCCeEEEecCC-HHHHHHHHHHHcCCCcc
Confidence 567777765 35655 55544444556666665421 11244443 3554332 4588888 887888999
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
+.+++|+|||.+|.+++..|.+ .|. ++|+++++. .++ .....+.+....-...++.+.-. -
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~-----~G~------~~v~i~~R~----~~~---a~~la~~~~~~~~~~~~~~~l~~-~ 180 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQ-----AGP------SELVIANRD----MAK---ALALRNELDHSRLRISRYEALEG-Q 180 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHH-----TCC------SEEEEECSC----HHH---HHHHHHHHCCTTEEEECSGGGTT-C
T ss_pred CCEEEEECccHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHhccCCeeEeeHHHhcc-c
Confidence 9999999999888888877765 364 589888873 221 11111222210000012222111 3
Q ss_pred CCcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEEc-CCCC
Q 011816 411 KPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILAL-SNPT 449 (477)
Q Consensus 411 kptvLIG~S~~~-----g~Ft~evv~~Ma~~~erPIIFaL-SNPt 449 (477)
++|++|-++..+ -.+..+.+ .+..+||=+ .||.
T Consensus 181 ~~DivInaTp~gm~~~~~~i~~~~l------~~~~~V~DlvY~P~ 219 (272)
T 3pwz_A 181 SFDIVVNATSASLTADLPPLPADVL------GEAALAYELAYGKG 219 (272)
T ss_dssp CCSEEEECSSGGGGTCCCCCCGGGG------TTCSEEEESSCSCC
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHh------CcCCEEEEeecCCC
Confidence 599999876543 12444332 367888877 5765
No 30
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=96.06 E-value=0.012 Score=57.91 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=81.0
Q ss_pred HHHHHHHHHH-hcCCCeeeeeecCCcccHHHHHHHHc-------CCCceecc-C--CCchHHHHHHHHHHHHHHhCCCCc
Q 011816 262 LDEFMSAVKQ-NYGEKVLIQFEDFANHNAFELLAKYG-------TTHLVFND-D--IQGTASVVLAGVVAALKLIGGTLA 330 (477)
Q Consensus 262 idefv~av~~-~fGp~~lIq~EDf~~~~af~iL~ryr-------~~~~~FnD-D--iQGTaaV~LAgll~Alr~~g~~l~ 330 (477)
+.+|++.++. .|.+ ++.-==-...+++++++.. --=++.++ | ..|.-.= -.|++.+++..+.+++
T Consensus 51 l~~~~~~~~~~~~~G---~nVTiP~K~~v~~~lD~l~~~A~~iGAVNTv~~~~~g~l~G~NTD-~~G~~~~l~~~~~~l~ 126 (283)
T 3jyo_A 51 LKTLLDAALYLGFNG---LNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDATGHTTGHNTD-VSGFGRGMEEGLPNAK 126 (283)
T ss_dssp HHHHHHHHHHTTCCE---EEECTTCTTTTGGGSSEECHHHHHHTCCCEEEECTTSCEEEECHH-HHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHhhCCCCE---EEECcccHHHHHHHhhhCCHHHHHhCcceEEEECCCCeEEEecCC-HHHHHHHHHHhCcCcC
Confidence 5677777654 4543 3332222233444444332 11133444 4 2453222 4688999998888999
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-------cCCCCCH
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-------HEPVNNL 403 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-------~~~~~~L 403 (477)
+.+++|+|||.+|.+++..|.. .|. ++|+++|+. .++ .....+.+... .-+..+|
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~-----~G~------~~v~i~~R~----~~~---a~~la~~~~~~~~~~~i~~~~~~~l 188 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD----TSR---AQALADVINNAVGREAVVGVDARGI 188 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSS----HHH---HHHHHHHHHHHHTSCCEEEECSTTH
T ss_pred CCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEECC----HHH---HHHHHHHHHhhcCCceEEEcCHHHH
Confidence 9999999999888888877765 364 579988874 221 11111222211 1123478
Q ss_pred HHHhcccCCcEEEeccCCC
Q 011816 404 LDAVKVIKPTILIGSSGVG 422 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~ 422 (477)
.++++. +|++|-++..+
T Consensus 189 ~~~l~~--~DiVInaTp~G 205 (283)
T 3jyo_A 189 EDVIAA--ADGVVNATPMG 205 (283)
T ss_dssp HHHHHH--SSEEEECSSTT
T ss_pred HHHHhc--CCEEEECCCCC
Confidence 888887 99999887654
No 31
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=96.02 E-value=0.014 Score=58.24 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh
Q 011816 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (477)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 389 (477)
.-+|-.|++..|+-.+.+|+..++|++|+|. .|..+|.+|... |. .+.+++++
T Consensus 141 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~-----gA-------tVtv~hs~-------------- 194 (286)
T 4a5o_A 141 RPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLG-----GC-------TVTVTHRF-------------- 194 (286)
T ss_dssp CCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHT-----TC-------EEEEECTT--------------
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------eEEEEeCC--------------
Confidence 3567788999999999999999999999875 899999998752 43 57777642
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCCCC----CCCCHHHHhc
Q 011816 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTSQ----SECTAEEAYT 461 (477)
Q Consensus 390 k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~----~E~tpe~A~~ 461 (477)
..+|.+.++. +|++|+..+.++.++.++|+ +.-+|+=++ ||... --+.+|++.+
T Consensus 195 ----------T~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvgi~~~~~gkl~GDVdf~~v~~ 253 (286)
T 4a5o_A 195 ----------TRDLADHVSR--ADLVVVAAGKPGLVKGEWIK------EGAIVIDVGINRQADGRLVGDVEYEVAAQ 253 (286)
T ss_dssp ----------CSCHHHHHHT--CSEEEECCCCTTCBCGGGSC------TTCEEEECCSCSSCCCCSSCSBCHHHHHH
T ss_pred ----------CcCHHHHhcc--CCEEEECCCCCCCCCHHHcC------CCeEEEEecccccccCCcccCccHHHHHh
Confidence 1368899987 99999999999999999984 566887664 66521 3456676655
No 32
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=96.00 E-value=0.011 Score=59.08 Aligned_cols=109 Identities=16% Similarity=0.155 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+-.-+|-.|++-.++..+.+++..++||+|+|. .|.-+|.++... | ..+.+++++
T Consensus 137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-----g-------AtVtv~hs~------------ 192 (288)
T 1b0a_A 137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLA-----G-------CTTTVTHRF------------ 192 (288)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTT-----T-------CEEEEECSS------------
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHC-----C-------CeEEEEeCC------------
Confidence 445678888999999999999999999999995 699999888642 4 367888642
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC-----CCCCCHHHHhc
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS-----QSECTAEEAYT 461 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~-----~~E~tpe~A~~ 461 (477)
..+|.+.++. +|++|+..+.++.+|+++|+ +.-+|+=++-|-. --.+.++++.+
T Consensus 193 ------------t~~L~~~~~~--ADIVI~Avg~p~lI~~~~vk------~GavVIDVgi~r~~~g~l~GDVdf~~v~~ 251 (288)
T 1b0a_A 193 ------------TKNLRHHVEN--ADLLIVAVGKPGFIPGDWIK------EGAIVIDVGINRLENGKVVGDVVFEDAAK 251 (288)
T ss_dssp ------------CSCHHHHHHH--CSEEEECSCCTTCBCTTTSC------TTCEEEECCCEECTTSCEECSBCHHHHHH
T ss_pred ------------chhHHHHhcc--CCEEEECCCCcCcCCHHHcC------CCcEEEEccCCccCCCCccCCcCHHHHhh
Confidence 1468999998 99999999999999999983 5678888876531 13556666654
No 33
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=95.96 E-value=0.01 Score=59.98 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHH---------hCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCC
Q 011816 313 VVLAGVVAALKL---------IGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 382 (477)
Q Consensus 313 V~LAgll~Alr~---------~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r 382 (477)
+|-.|.+-.++- .|.+++..++||+|+|. .|.-+|.++... | ..++++|+...-...|
T Consensus 150 cTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~-----g-------AtVtv~nR~~~~l~~r 217 (320)
T 1edz_A 150 CTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLAND-----G-------ATVYSVDVNNIQKFTR 217 (320)
T ss_dssp HHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTT-----S-------CEEEEECSSEEEEEES
T ss_pred CcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHC-----C-------CEEEEEeCchHHHHhH
Confidence 344555666666 68899999999999996 598898888642 4 3689999976655555
Q ss_pred CCCCchhchhhccccCC---C--CCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 383 KDSLQHFKKPWAHEHEP---V--NNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 383 ~~~l~~~k~~~a~~~~~---~--~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
...+... ++.... . .+|.++++. +|++|+..+.++. +|.++|+ +.-+|+-++.|-
T Consensus 218 a~~la~~----~~~~t~~~~t~~~~L~e~l~~--ADIVIsAtg~p~~vI~~e~vk------~GavVIDVgi~r 278 (320)
T 1edz_A 218 GESLKLN----KHHVEDLGEYSEDLLKKCSLD--SDVVITGVPSENYKFPTEYIK------EGAVCINFACTK 278 (320)
T ss_dssp CCCSSCC----CCEEEEEEECCHHHHHHHHHH--CSEEEECCCCTTCCBCTTTSC------TTEEEEECSSSC
T ss_pred HHHHhhh----cccccccccccHhHHHHHhcc--CCEEEECCCCCcceeCHHHcC------CCeEEEEcCCCc
Confidence 4434311 111100 1 469999998 9999999999987 9999984 457999999886
No 34
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=95.91 E-value=0.086 Score=55.08 Aligned_cols=186 Identities=19% Similarity=0.202 Sum_probs=122.5
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHH---HHHHHc---C--CCceeccC----------CCchHHHHH
Q 011816 254 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYG---T--THLVFNDD----------IQGTASVVL 315 (477)
Q Consensus 254 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---iL~ryr---~--~~~~FnDD----------iQGTaaV~L 315 (477)
+-+|-..|...|++++.+.-||..-|-=+|++.. ..+ +.+.|+ + ...++.-+ -.-||-=+.
T Consensus 116 s~~e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~-~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~ 194 (421)
T 1v9l_A 116 SQRELEELSRGYARAIAPLIGDVVDIPAPDVGTN-AQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVA 194 (421)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEEEECCTTCC-HHHHHHHHHHHHHHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-HHHHHHHHHHHHHHhCCCCCCeEeccchhhCCCCCcccchHHHHH
Confidence 4456677889999999999899988999999873 222 235552 1 11223222 123555556
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE-EEccCCcccCCCCCCCc---hhch
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ---HFKK 391 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~-lvD~~GLi~~~r~~~l~---~~k~ 391 (477)
-++-.+++..|.+|+..+|+|.|.|..|...|++|.+ .|. +++ +.|++|-|++...=+++ .++.
T Consensus 195 ~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~aa~~L~e-----~Ga-------kVVavsD~~G~i~dp~GlD~~~l~~~k~ 262 (421)
T 1v9l_A 195 VATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEK-----MGA-------KVIAVSDINGVAYRKEGLNVELIQKNKG 262 (421)
T ss_dssp HHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHT-----TTC-------EEEEEECSSCEEECTTCCCTHHHHHTTT
T ss_pred HHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEEECCCcEEECCCCCCHHHHHHHHH
Confidence 6677788889999999999999999999999988864 353 555 99999999886421121 1221
Q ss_pred h--------hcccc--CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHh
Q 011816 392 P--------WAHEH--EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 460 (477)
Q Consensus 392 ~--------~a~~~--~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~ 460 (477)
. |.... ....+-.+ +-.++.|+|+=+.. ++.+|++-++.+ .-.||.--+| |++ +| +++.+
T Consensus 263 ~~g~~~v~~y~~~~~~~~~~~~~~-~~~~~~Dil~P~A~-~~~I~~~~a~~l----~ak~V~EgAN~p~t-~~--a~~~l 333 (421)
T 1v9l_A 263 LTGPALVELFTTKDNAEFVKNPDA-IFKLDVDIFVPAAI-ENVIRGDNAGLV----KARLVVEGANGPTT-PE--AERIL 333 (421)
T ss_dssp SCHHHHHHHHHHTSCCCCCSSTTG-GGGCCCSEEEECSC-SSCBCTTTTTTC----CCSEEECCSSSCBC-HH--HHHHH
T ss_pred hhCCccccccccccCceEeCCchh-hhcCCccEEEecCc-CCccchhhHHHc----CceEEEecCCCcCC-HH--HHHHH
Confidence 1 11000 11101123 34468999997775 668998888877 5689998998 664 44 44555
Q ss_pred c
Q 011816 461 T 461 (477)
Q Consensus 461 ~ 461 (477)
.
T Consensus 334 ~ 334 (421)
T 1v9l_A 334 Y 334 (421)
T ss_dssp H
T ss_pred H
Confidence 5
No 35
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=95.87 E-value=0.031 Score=57.04 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=114.7
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCeeeeeecCCccc--HHHHHHHHcC---CCcee---ccCCCchHHHHHHHHHHHHHHhC
Q 011816 255 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGT---THLVF---NDDIQGTASVVLAGVVAALKLIG 326 (477)
Q Consensus 255 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~iL~ryr~---~~~~F---nDDiQGTaaV~LAgll~Alr~~g 326 (477)
..+-++++..|.+++.+..|+ -|-=+|++..- ---+.+.|+. +-..+ .|--.-||-=+.-++-.+++..|
T Consensus 92 ~~~~e~~~r~~~~~~~~l~g~--~ipa~D~gt~~~~m~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~G 169 (355)
T 1c1d_A 92 PSTWARILRIHAENIDKLSGN--YWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRG 169 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTTTS--EEEEECTTCCHHHHHHHHHHCSCBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHhcCC--cccCCCCCCCHHHHHHHHHhcCeeeccchhhCCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 345567788888888887765 46778987532 2224555652 11111 11112355566667778888889
Q ss_pred C-CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccC-CCCCHH
Q 011816 327 G-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLL 404 (477)
Q Consensus 327 ~-~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~-~~~~L~ 404 (477)
. .|+..+++|.|.|..|..+|+.+.. .|. ++++.|++ . + +..|++... ..-++.
T Consensus 170 ~~~L~GktV~I~G~GnVG~~~A~~l~~-----~Ga-------kVvvsD~~----~---~-----~~~~a~~~ga~~v~~~ 225 (355)
T 1c1d_A 170 LGSLDGLTVLVQGLGAVGGSLASLAAE-----AGA-------QLLVADTD----T---E-----RVAHAVALGHTAVALE 225 (355)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSC----H---H-----HHHHHHHTTCEECCGG
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEEeCC----c---c-----HHHHHHhcCCEEeChH
Confidence 8 8999999999999999999998754 363 67788864 1 1 122332211 112344
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhcccCCcEEEE
Q 011816 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYTWSKVQTIIL 470 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~~t~G~aifA 470 (477)
+..+ ++.|+++=. +..+.++++.++.| +-.+|.--+| |+..+|+ .++++ ++.++++
T Consensus 226 ell~-~~~DIliP~-A~~~~I~~~~~~~l----k~~iVie~AN~p~t~~eA--~~~L~--~~gIlv~ 282 (355)
T 1c1d_A 226 DVLS-TPCDVFAPC-AMGGVITTEVARTL----DCSVVAGAANNVIADEAA--SDILH--ARGILYA 282 (355)
T ss_dssp GGGG-CCCSEEEEC-SCSCCBCHHHHHHC----CCSEECCSCTTCBCSHHH--HHHHH--HTTCEEC
T ss_pred Hhhc-CccceecHh-HHHhhcCHHHHhhC----CCCEEEECCCCCCCCHHH--HHHHH--hCCEEEE
Confidence 5443 468999954 45679999999999 3578888888 7644453 46655 3445543
No 36
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=95.85 E-value=0.039 Score=58.52 Aligned_cols=123 Identities=15% Similarity=0.208 Sum_probs=87.9
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCC
Q 011816 306 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS 385 (477)
Q Consensus 306 DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~ 385 (477)
.+.|.......|+ .+..|..+...+++|+|.|..|.++|+.+... |+ +++.+|++.. + .
T Consensus 235 ~~~~~~~~l~~gw---~r~~~~~l~GktVgIIG~G~IG~~vA~~l~~~-----G~-------~Viv~d~~~~----~-~- 293 (479)
T 1v8b_A 235 NVYGCRHSLPDGL---MRATDFLISGKIVVICGYGDVGKGCASSMKGL-----GA-------RVYITEIDPI----C-A- 293 (479)
T ss_dssp HHHHHHHHHHHHH---HHHHCCCCTTSEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSCHH----H-H-
T ss_pred chHhHHHHHhhhh---hhccccccCCCEEEEEeeCHHHHHHHHHHHhC-----cC-------EEEEEeCChh----h-H-
Confidence 3445555555662 35688899999999999999999999998653 53 6888887421 0 0
Q ss_pred CchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhc
Q 011816 386 LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 461 (477)
Q Consensus 386 l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~ 461 (477)
+. .+...-...+|.|+++. .|++|......+.++++.++.|. +..||.=.|.-. .|+.-++..+
T Consensus 294 ~~-----a~~~g~~~~~l~ell~~--aDiVi~~~~t~~lI~~~~l~~MK---~gailiNvgrg~--~EId~~aL~~ 357 (479)
T 1v8b_A 294 IQ-----AVMEGFNVVTLDEIVDK--GDFFITCTGNVDVIKLEHLLKMK---NNAVVGNIGHFD--DEIQVNELFN 357 (479)
T ss_dssp HH-----HHTTTCEECCHHHHTTT--CSEEEECCSSSSSBCHHHHTTCC---TTCEEEECSSTT--TSBCHHHHHT
T ss_pred HH-----HHHcCCEecCHHHHHhc--CCEEEECCChhhhcCHHHHhhcC---CCcEEEEeCCCC--ccccchhhhc
Confidence 00 11111112479999987 99999998778899999999996 677888888765 6777766655
No 37
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=95.83 E-value=0.016 Score=58.20 Aligned_cols=110 Identities=25% Similarity=0.339 Sum_probs=83.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC
Q 011816 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (477)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l 386 (477)
.|-.-+|-.|++..++-.+.+|+..++|++|+|. .|..+|.+|... |. .+.+++++ ..
T Consensus 142 ~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-----gA-------tVtv~~~~-------T~-- 200 (300)
T 4a26_A 142 PPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKE-----NA-------TVTIVHSG-------TS-- 200 (300)
T ss_dssp CSCCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT-------SC--
T ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHC-----CC-------eEEEEeCC-------CC--
Confidence 3444678888999999999999999999999876 899999998752 53 58888762 11
Q ss_pred chhchhhccccCCCCCHH--HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC----CCC------CC
Q 011816 387 QHFKKPWAHEHEPVNNLL--DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NP----TSQ------SE 453 (477)
Q Consensus 387 ~~~k~~~a~~~~~~~~L~--eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NP----t~~------~E 453 (477)
+|. +.++. +|++|...+.++.++.++|+ +.-+|+=++ || +++ -.
T Consensus 201 ---------------~l~l~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvgi~~~~~~~~~~g~kl~GD 257 (300)
T 4a26_A 201 ---------------TEDMIDYLRT--ADIVIAAMGQPGYVKGEWIK------EGAAVVDVGTTPVPDPSRKDGYRLVGD 257 (300)
T ss_dssp ---------------HHHHHHHHHT--CSEEEECSCCTTCBCGGGSC------TTCEEEECCCEEESCSCSTTSCEEECS
T ss_pred ---------------Cchhhhhhcc--CCEEEECCCCCCCCcHHhcC------CCcEEEEEeccCCcCCcccCCceeecC
Confidence 355 88887 99999999999999999983 566777665 33 221 25
Q ss_pred CCHHHHhc
Q 011816 454 CTAEEAYT 461 (477)
Q Consensus 454 ~tpe~A~~ 461 (477)
+.+|++.+
T Consensus 258 Vdf~~v~~ 265 (300)
T 4a26_A 258 VCFEEAAA 265 (300)
T ss_dssp BCHHHHTT
T ss_pred ccHHHHHh
Confidence 67777755
No 38
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=95.67 E-value=0.011 Score=58.12 Aligned_cols=111 Identities=22% Similarity=0.268 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
-.|++.+++-.+.++++.+++|+|||.+|.+++..|.. .|. ++|+++++. .++.+.+.. .+.
T Consensus 101 ~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~-----~G~------~~v~v~~R~----~~~a~~la~---~~~ 162 (277)
T 3don_A 101 GIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYK-----IVR------PTLTVANRT----MSRFNNWSL---NIN 162 (277)
T ss_dssp HHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHT-----TCC------SCCEEECSC----GGGGTTCCS---CCE
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC----HHHHHHHHH---hcc
Confidence 45678888888999999999999999998888887764 364 578888874 222222221 111
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCCCCCCH--HHHHHHHcCCCCcEEEEcC-CCC
Q 011816 395 HEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTK--EVIEAMASFNEKPLILALS-NPT 449 (477)
Q Consensus 395 ~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~--evv~~Ma~~~erPIIFaLS-NPt 449 (477)
. ....++.++++. +|++|-++..+ .... +.+ ......+..+|+=|+ ||.
T Consensus 163 ~--~~~~~~~~~~~~--aDiVInaTp~G-m~~~~~~~l-~~~~l~~~~~V~D~vY~P~ 214 (277)
T 3don_A 163 K--INLSHAESHLDE--FDIIINTTPAG-MNGNTDSVI-SLNRLASHTLVSDIVYNPY 214 (277)
T ss_dssp E--ECHHHHHHTGGG--CSEEEECCC--------CCSS-CCTTCCSSCEEEESCCSSS
T ss_pred c--ccHhhHHHHhcC--CCEEEECccCC-CCCCCcCCC-CHHHcCCCCEEEEecCCCC
Confidence 0 112346666766 99999776644 2211 011 112234677888885 775
No 39
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=95.41 E-value=0.088 Score=53.71 Aligned_cols=102 Identities=16% Similarity=0.307 Sum_probs=66.8
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHh
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav 407 (477)
++.+.+++|+|||..|..++..+... |. ++|+++|+. ..| .....+.+--..-...++.+++
T Consensus 164 ~l~g~~VlIiGaG~iG~~~a~~l~~~-----G~------~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~l~~~l 225 (404)
T 1gpj_A 164 SLHDKTVLVVGAGEMGKTVAKSLVDR-----GV------RAVLVANRT----YER---AVELARDLGGEAVRFDELVDHL 225 (404)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHH-----CC------SEEEEECSS----HHH---HHHHHHHHTCEECCGGGHHHHH
T ss_pred cccCCEEEEEChHHHHHHHHHHHHHC-----CC------CEEEEEeCC----HHH---HHHHHHHcCCceecHHhHHHHh
Confidence 57889999999999999999988653 64 579988873 111 1111111211111124678888
Q ss_pred cccCCcEEEeccCCC-CCCCHHHHHH--HH-cCCCCcEEEEcCCCC
Q 011816 408 KVIKPTILIGSSGVG-RTFTKEVIEA--MA-SFNEKPLILALSNPT 449 (477)
Q Consensus 408 ~~vkptvLIG~S~~~-g~Ft~evv~~--Ma-~~~erPIIFaLSNPt 449 (477)
+. +|++|-.++.+ ..++++.++. |. +...+-+++-++.|-
T Consensus 226 ~~--aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~ 269 (404)
T 1gpj_A 226 AR--SDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR 269 (404)
T ss_dssp HT--CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred cC--CCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCC
Confidence 75 99999877654 3568888987 43 223456778899886
No 40
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=95.35 E-value=0.046 Score=53.16 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=78.4
Q ss_pred HHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCC
Q 011816 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 401 (477)
Q Consensus 322 lr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~ 401 (477)
++..+..+.+.+++|+|+|..|..+|+.+.. .|. +++.+|+.- .+ +...+..-++. -...
T Consensus 148 ~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~-----~G~-------~V~~~d~~~----~~---~~~~~~~g~~~-~~~~ 207 (300)
T 2rir_A 148 IQHTDYTIHGSQVAVLGLGRTGMTIARTFAA-----LGA-------NVKVGARSS----AH---LARITEMGLVP-FHTD 207 (300)
T ss_dssp HHTCSSCSTTSEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESSH----HH---HHHHHHTTCEE-EEGG
T ss_pred HHhcCCCCCCCEEEEEcccHHHHHHHHHHHH-----CCC-------EEEEEECCH----HH---HHHHHHCCCeE-Echh
Confidence 3456789999999999999999999998864 253 688888741 11 11111100110 0124
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcE-EEEcC
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQT-IILQH 472 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~a-ifAsG 472 (477)
+|.+.++. +|++|-.... +.++++.++.|. +..+|+=+|.-. .+|..+.+.+ .|.. +.+.|
T Consensus 208 ~l~~~l~~--aDvVi~~~p~-~~i~~~~~~~mk---~g~~lin~a~g~--~~~~~~~a~~--~G~~~i~~pg 269 (300)
T 2rir_A 208 ELKEHVKD--IDICINTIPS-MILNQTVLSSMT---PKTLILDLASRP--GGTDFKYAEK--QGIKALLAPG 269 (300)
T ss_dssp GHHHHSTT--CSEEEECCSS-CCBCHHHHTTSC---TTCEEEECSSTT--CSBCHHHHHH--HTCEEEECCC
T ss_pred hHHHHhhC--CCEEEECCCh-hhhCHHHHHhCC---CCCEEEEEeCCC--CCcCHHHHHH--CCCEEEECCC
Confidence 68888876 9999977664 699999888885 677888888632 3455554433 3543 34444
No 41
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=95.30 E-value=0.031 Score=55.63 Aligned_cols=99 Identities=14% Similarity=0.288 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~ 387 (477)
+-.-+|-.|++-.++..+.+++..++|++|+|. .|.-+|.++.. .|. ...+.+++++
T Consensus 136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~-----~g~-----~atVtv~h~~------------ 193 (281)
T 2c2x_A 136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTR-----RSE-----NATVTLCHTG------------ 193 (281)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTS-----TTT-----CCEEEEECTT------------
T ss_pred CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhc-----CCC-----CCEEEEEECc------------
Confidence 444567788999999999999999999999996 58888888753 210 1367777532
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 388 ~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
..+|.+.++. +|++|+..+.++.+|+++|+ +.-+|+=++-|-
T Consensus 194 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVgi~r 235 (281)
T 2c2x_A 194 ------------TRDLPALTRQ--ADIVVAAVGVAHLLTADMVR------PGAAVIDVGVSR 235 (281)
T ss_dssp ------------CSCHHHHHTT--CSEEEECSCCTTCBCGGGSC------TTCEEEECCEEE
T ss_pred ------------hhHHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEccCCC
Confidence 1479999987 99999999999999999984 467888888663
No 42
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=95.29 E-value=0.022 Score=57.02 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
-.|++.+|+-.|.++++.+++|+|||.+|.+||..|.. .|. ++|+++++.+ .+.+......+.+.
T Consensus 138 ~~Gf~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~-----~Ga------~~V~i~nR~~----~~~~~a~~la~~~~ 202 (315)
T 3tnl_A 138 GTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAAL-----DGV------KEISIFNRKD----DFYANAEKTVEKIN 202 (315)
T ss_dssp HHHHHHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECSS----TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCCEEEEECCChHHHHHHHHHHH-----CCC------CEEEEEECCC----chHHHHHHHHHHhh
Confidence 46788889888999999999999999888888877764 364 6899998852 11111111111221
Q ss_pred cc------cCCC---CCHHHHhcccCCcEEEeccCCC
Q 011816 395 HE------HEPV---NNLLDAVKVIKPTILIGSSGVG 422 (477)
Q Consensus 395 ~~------~~~~---~~L~eav~~vkptvLIG~S~~~ 422 (477)
.. ..+. .+|.++++. +|++|-++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~~l~~--aDiIINaTp~G 237 (315)
T 3tnl_A 203 SKTDCKAQLFDIEDHEQLRKEIAE--SVIFTNATGVG 237 (315)
T ss_dssp HHSSCEEEEEETTCHHHHHHHHHT--CSEEEECSSTT
T ss_pred hhcCCceEEeccchHHHHHhhhcC--CCEEEECccCC
Confidence 10 0111 235667765 99999777654
No 43
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=95.21 E-value=0.024 Score=56.65 Aligned_cols=91 Identities=25% Similarity=0.310 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
-.|++.+|+-.|.++++.+++|+|||.||.+|+..|.. .|. ++|+++++. ..+.+......+.+.
T Consensus 132 ~~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~-----~G~------~~v~v~nRt----~~~~~~a~~la~~~~ 196 (312)
T 3t4e_A 132 GTGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAI-----EGI------KEIKLFNRK----DDFFEKAVAFAKRVN 196 (312)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECS----STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH-----cCC------CEEEEEECC----CchHHHHHHHHHHhh
Confidence 35788888888899999999999999888888887765 364 689998874 221111111111221
Q ss_pred cc------cCCCCCH---HHHhcccCCcEEEeccCCC
Q 011816 395 HE------HEPVNNL---LDAVKVIKPTILIGSSGVG 422 (477)
Q Consensus 395 ~~------~~~~~~L---~eav~~vkptvLIG~S~~~ 422 (477)
.. ..+..++ .+.++. +|++|-++..+
T Consensus 197 ~~~~~~v~~~~~~~l~~~~~~l~~--~DiIINaTp~G 231 (312)
T 3t4e_A 197 ENTDCVVTVTDLADQHAFTEALAS--ADILTNGTKVG 231 (312)
T ss_dssp HHSSCEEEEEETTCHHHHHHHHHH--CSEEEECSSTT
T ss_pred hccCcceEEechHhhhhhHhhccC--ceEEEECCcCC
Confidence 11 0112344 566776 99999877654
No 44
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=95.21 E-value=0.0048 Score=60.71 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=71.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccC-CCCCHHHHhcccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~-~~~~L~eav~~vk 411 (477)
||.|+|||..|.++|..+.. .|. ...++++|.+---.......+.+.. +|..... ...+ .++++.
T Consensus 2 kI~VIGaG~vG~~la~~la~-----~g~-----~~eV~L~D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~-~~a~~~-- 67 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVL-----RGS-----CSELVLVDRDEDRAQAEAEDIAHAA-PVSHGTRVWHGG-HSELAD-- 67 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSHHHHHHHHHHHTTSC-CTTSCCEEEEEC-GGGGTT--
T ss_pred EEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCHHHHHHHHHhhhhhh-hhcCCeEEEECC-HHHhCC--
Confidence 89999999999999987754 254 2479999985210000000011100 1111100 0023 356776
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEEcC
Q 011816 412 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 412 ptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifAsG 472 (477)
+|++|=+.+.+.. +-+++++.|+++++..+|+-.|||. ....+.+.+.+.-.-+|++|
T Consensus 68 aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~---~~~~~~~~~~~~~~rviG~g 139 (304)
T 2v6b_A 68 AQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPV---DLLTDLATQLAPGQPVIGSG 139 (304)
T ss_dssp CSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSH---HHHHHHHHHHSCSSCEEECT
T ss_pred CCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCch---HHHHHHHHHhCChhcEEeCC
Confidence 9998866544321 2278888898888888888899998 34444555555555677765
No 45
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=95.03 E-value=0.044 Score=58.33 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
|+......|+ .+.+|..+...+++|+|.|..|.++|+.+.. .|+ +++.+|++.. + . +..
T Consensus 258 ~~~~~l~~gw---~~~~g~~L~GktVgIIG~G~IG~~vA~~l~~-----~G~-------~V~v~d~~~~----~-~-~~a 316 (494)
T 3d64_A 258 GCRESLVDGI---KRATDVMIAGKIAVVAGYGDVGKGCAQSLRG-----LGA-------TVWVTEIDPI----C-A-LQA 316 (494)
T ss_dssp HHHTTHHHHH---HHHHCCCCTTCEEEEECCSHHHHHHHHHHHT-----TTC-------EEEEECSCHH----H-H-HHH
T ss_pred hhhhhhhhhh---hhccccccCCCEEEEEccCHHHHHHHHHHHH-----CCC-------EEEEEeCChH----h-H-HHH
Confidence 3333344552 3678999999999999999999999998853 253 6888887421 0 0 000
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+...-...+|.|+++. .|+++......++++++.++.|. +..||.=.|...
T Consensus 317 -----~~~G~~~~~l~ell~~--aDiVi~~~~t~~lI~~~~l~~MK---~gAilINvgrg~ 367 (494)
T 3d64_A 317 -----AMEGYRVVTMEYAADK--ADIFVTATGNYHVINHDHMKAMR---HNAIVCNIGHFD 367 (494)
T ss_dssp -----HTTTCEECCHHHHTTT--CSEEEECSSSSCSBCHHHHHHCC---TTEEEEECSSSS
T ss_pred -----HHcCCEeCCHHHHHhc--CCEEEECCCcccccCHHHHhhCC---CCcEEEEcCCCc
Confidence 0001112479999987 99999997777899999999996 677888788755
No 46
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=94.93 E-value=0.011 Score=51.07 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=65.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
|-.+|+.+++-.+-+.. ..||+|+|+|..|..++..+.. .|. + ++++|+. ..+ ...
T Consensus 4 ~~~sv~~~a~~~~~~~~-----~~~v~iiG~G~iG~~~a~~l~~-----~g~------~-v~v~~r~----~~~---~~~ 59 (144)
T 3oj0_A 4 GKVSIPSIVYDIVRKNG-----GNKILLVGNGMLASEIAPYFSY-----PQY------K-VTVAGRN----IDH---VRA 59 (144)
T ss_dssp CCCSHHHHHHHHHHHHC-----CCEEEEECCSHHHHHHGGGCCT-----TTC------E-EEEEESC----HHH---HHH
T ss_pred CcccHHHHHHHHHHhcc-----CCEEEEECCCHHHHHHHHHHHh-----CCC------E-EEEEcCC----HHH---HHH
Confidence 33445555544333322 7799999999999988877643 242 3 8888863 111 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
..+.|.-......++.++++. +|++|-+++.+ ..++.+.+ .+.-+|+-+++|.
T Consensus 60 ~a~~~~~~~~~~~~~~~~~~~--~Divi~at~~~~~~~~~~~l------~~g~~vid~~~p~ 113 (144)
T 3oj0_A 60 FAEKYEYEYVLINDIDSLIKN--NDVIITATSSKTPIVEERSL------MPGKLFIDLGNPP 113 (144)
T ss_dssp HHHHHTCEEEECSCHHHHHHT--CSEEEECSCCSSCSBCGGGC------CTTCEEEECCSSC
T ss_pred HHHHhCCceEeecCHHHHhcC--CCEEEEeCCCCCcEeeHHHc------CCCCEEEEccCCc
Confidence 122221111234678999986 99999776644 24554433 2577899999986
No 47
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=94.92 E-value=0.024 Score=55.71 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=57.6
Q ss_pred HHHHHHHHHhC-CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 316 AGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 316 Agll~Alr~~g-~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
.|++.+++..+ .+++..+++|+|||.+|.++|..|.. .|. ++|+++|+. .++ .....+.+.
T Consensus 125 ~G~~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~-----~G~------~~V~v~nR~----~~k---a~~la~~~~ 186 (297)
T 2egg_A 125 LGYVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLS-----TAA------ERIDMANRT----VEK---AERLVREGD 186 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHT-----TTC------SEEEEECSS----HHH---HHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHH-----CCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 78888888877 78999999999999999888888764 353 579988874 111 111111111
Q ss_pred c---ccCCCCCHHHHhcccCCcEEEeccCCC
Q 011816 395 H---EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (477)
Q Consensus 395 ~---~~~~~~~L~eav~~vkptvLIG~S~~~ 422 (477)
. ......++.++++. +|++|-+++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~--aDivIn~t~~~ 215 (297)
T 2egg_A 187 ERRSAYFSLAEAETRLAE--YDIIINTTSVG 215 (297)
T ss_dssp SSSCCEECHHHHHHTGGG--CSEEEECSCTT
T ss_pred hccCceeeHHHHHhhhcc--CCEEEECCCCC
Confidence 1 00011246666765 99999888755
No 48
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A
Probab=94.90 E-value=0.84 Score=48.08 Aligned_cols=187 Identities=17% Similarity=0.179 Sum_probs=121.4
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccH--HHHHHHHc---CC--Cceecc----------CCCchHHHHHHH
Q 011816 255 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYG---TT--HLVFND----------DIQGTASVVLAG 317 (477)
Q Consensus 255 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr---~~--~~~FnD----------DiQGTaaV~LAg 317 (477)
-.|-..|...||..+.+..||..-|-=+|++..-. --+.+.|+ +. .-|+-. .-.-||-=+.-+
T Consensus 137 ~~e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~~ 216 (449)
T 1bgv_A 137 DREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYY 216 (449)
T ss_dssp HHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHHHHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHHH
Confidence 34566677779999988899999999999987521 11233443 21 122211 223466666667
Q ss_pred HHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC-chh-------
Q 011816 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL-QHF------- 389 (477)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l-~~~------- 389 (477)
+-.+++..|.+|+..||+|.|.|..|...|++|.+. |. +=+-+.|++|-|++.. .+ ++.
T Consensus 217 ~~~~~~~~G~~l~g~~v~VqG~GnVG~~~a~~L~~~-----Ga------kvVavsD~~G~i~dp~--Gi~d~edi~~l~~ 283 (449)
T 1bgv_A 217 VEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL-----GA------KAVTLSGPDGYIYDPE--GITTEEKINYMLE 283 (449)
T ss_dssp HHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHH-----TC------EEEEEEETTEEEECTT--CSCSHHHHHHHHH
T ss_pred HHHHHHHccCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEeCCceEECCC--cCCCHHHHHHHHH
Confidence 778888899999999999999999999999888764 53 3344799999988764 24 221
Q ss_pred -c-------hhhccc--cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHH
Q 011816 390 -K-------KPWAHE--HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEE 458 (477)
Q Consensus 390 -k-------~~~a~~--~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~ 458 (477)
+ ..|+.. .+.. +-.+. -.++.|+|+=+.. ++.+|++-.+.+.+ |...||.--+| |++ +|. ++
T Consensus 284 ~k~~~~g~v~~y~~~~~a~~i-~~~e~-~~~~~Dil~P~A~-~~~I~~~na~~l~a-~g~kiV~EgAN~p~T-~eA--~~ 356 (449)
T 1bgv_A 284 MRASGRNKVQDYADKFGVQFF-PGEKP-WGQKVDIIMPCAT-QNDVDLEQAKKIVA-NNVKYYIEVANMPTT-NEA--LR 356 (449)
T ss_dssp HHHHCCCCTHHHHHHHTCEEE-ETCCG-GGSCCSEEECCSC-TTCBCHHHHHHHHH-TTCCEEECCSSSCBC-HHH--HH
T ss_pred HHhccCCChhhcccccCCEEe-Cchhh-hcCCcceeecccc-ccccchhhHHHHHh-cCCeEEEeCCCCcCC-HHH--HH
Confidence 1 111110 0000 00112 2468999997775 56999999999964 23579998998 663 443 34
Q ss_pred Hhc
Q 011816 459 AYT 461 (477)
Q Consensus 459 A~~ 461 (477)
.+.
T Consensus 357 ~l~ 359 (449)
T 1bgv_A 357 FLM 359 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 49
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=94.81 E-value=0.088 Score=53.75 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCC-ceeccC---------CCchHHHHHHHHHHHHHHh-CC
Q 011816 259 AELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH-LVFNDD---------IQGTASVVLAGVVAALKLI-GG 327 (477)
Q Consensus 259 ~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~-~~FnDD---------iQGTaaV~LAgll~Alr~~-g~ 327 (477)
++++..|.+++.+..|+ -|-=+|++..- +.+...-+.+ ++.--- ---||.=+.-++..+++.. |.
T Consensus 93 ~~~~r~~~~~~~~l~g~--~i~A~D~Gt~~--~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~~G~ 168 (364)
T 1leh_A 93 EDMFRALGRFIQGLNGR--YITAEDVGTTV--DDMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGS 168 (364)
T ss_dssp HHHHHHHHHHHHTTTTS--EEBCBCTTCCH--HHHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcCc--eEEcccCCCCH--HHHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHHHHhhccc
Confidence 35677788888887765 46667887533 2334333333 111111 1235444555556666664 76
Q ss_pred -CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHH
Q 011816 328 -TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (477)
Q Consensus 328 -~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~ea 406 (477)
+|++.+|+|.|+|..|..+|+.+.+. |. ++++.|++ + +.+..+.+.|- ...-++.+.
T Consensus 169 ~~L~GktV~V~G~G~VG~~~A~~L~~~-----Ga-------kVvv~D~~------~-~~l~~~a~~~g---a~~v~~~~l 226 (364)
T 1leh_A 169 DSLEGLAVSVQGLGNVAKALCKKLNTE-----GA-------KLVVTDVN------K-AAVSAAVAEEG---ADAVAPNAI 226 (364)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC------H-HHHHHHHHHHC---CEECCGGGT
T ss_pred cCCCcCEEEEECchHHHHHHHHHHHHC-----CC-------EEEEEcCC------H-HHHHHHHHHcC---CEEEChHHH
Confidence 89999999999999999999998653 63 57788852 1 11222222221 111133343
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCCCHHHHhc
Q 011816 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 461 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~tpe~A~~ 461 (477)
.. .+.|++|=.+ ..+.++++.++.| ...+|.--+| |+..+| +.++++
T Consensus 227 l~-~~~DIvip~a-~~~~I~~~~~~~l----g~~iV~e~An~p~t~~e--a~~~L~ 274 (364)
T 1leh_A 227 YG-VTCDIFAPCA-LGAVLNDFTIPQL----KAKVIAGSADNQLKDPR--HGKYLH 274 (364)
T ss_dssp TT-CCCSEEEECS-CSCCBSTTHHHHC----CCSEECCSCSCCBSSHH--HHHHHH
T ss_pred hc-cCCcEeeccc-hHHHhCHHHHHhC----CCcEEEeCCCCCcccHH--HHHHHH
Confidence 32 5789999654 4569999988888 3567776777 553334 445544
No 50
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=94.69 E-value=0.037 Score=53.49 Aligned_cols=147 Identities=19% Similarity=0.330 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCC--------CeeeeeecCCcccHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccce
Q 011816 262 LDEFMSAVKQNYGE--------KVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHR 333 (477)
Q Consensus 262 idefv~av~~~fGp--------~~lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~r 333 (477)
+.+|++.++..|.+ ..++.+=|- ++.|..+ .--=++.++ .|.-.= -.|++.+|+.. .+++ +
T Consensus 42 l~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~-~~~A~~i----GAvNTi~~~--~G~NTD-~~G~~~~l~~~--~~~~-~ 110 (253)
T 3u62_A 42 FDTEIRRILEEYDGFNATIPHKERVMRYVEP-SEDAQRI----KAVNCVFRG--KGYNTD-WVGVVKSLEGV--EVKE-P 110 (253)
T ss_dssp HHHHHHHHHHHCSEEEECTTCTTGGGGGSEE-CHHHHHH----TCCCEEETT--EEECCH-HHHHHHHTTTC--CCCS-S
T ss_pred HHHHHHHHhhCCCceeecCChHHHHHHHhCC-CHHHHHc----CcceEeecC--EEEcch-HHHHHHHHHhc--CCCC-e
Confidence 56777776654532 234445555 5555543 110112222 331111 13677887654 5778 9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCc
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPT 413 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkpt 413 (477)
++|+|||.+|.+++..|.. .|. ++|+++|+. .+|.+.|.. .|.. ....++.++++. +|
T Consensus 111 vliiGaGg~a~ai~~~L~~-----~G~------~~I~v~nR~----~~ka~~la~---~~~~--~~~~~~~~~~~~--aD 168 (253)
T 3u62_A 111 VVVVGAGGAARAVIYALLQ-----MGV------KDIWVVNRT----IERAKALDF---PVKI--FSLDQLDEVVKK--AK 168 (253)
T ss_dssp EEEECCSHHHHHHHHHHHH-----TTC------CCEEEEESC----HHHHHTCCS---SCEE--EEGGGHHHHHHT--CS
T ss_pred EEEECcHHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHHHHHHHH---Hccc--CCHHHHHhhhcC--CC
Confidence 9999999999999888765 364 579999884 222122211 1111 123467788876 99
Q ss_pred EEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 414 ILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 414 vLIG~S~~~-----g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
++|-++..+ ..+.++.+ .+..+|+-++-
T Consensus 169 iVInatp~gm~p~~~~i~~~~l------~~~~~V~Divy 201 (253)
T 3u62_A 169 SLFNTTSVGMKGEELPVSDDSL------KNLSLVYDVIY 201 (253)
T ss_dssp EEEECSSTTTTSCCCSCCHHHH------TTCSEEEECSS
T ss_pred EEEECCCCCCCCCCCCCCHHHh------CcCCEEEEeeC
Confidence 999765432 23555444 25778887764
No 51
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=94.68 E-value=0.044 Score=55.03 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=64.5
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc----CCCCCHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLL 404 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~ 404 (477)
++..+++|+|||.+|.+++..+.. .| | +++++|+. ..| +...+..++... ....++.
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~-----~G-----a--~V~v~dr~----~~r---~~~~~~~~~~~~~~~~~~~~~~~ 225 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVG-----LG-----A--QVQIFDIN----VER---LSYLETLFGSRVELLYSNSAEIE 225 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHH-----TT-----C--EEEEEESC----HHH---HHHHHHHHGGGSEEEECCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh-----CC-----C--EEEEEeCC----HHH---HHHHHHhhCceeEeeeCCHHHHH
Confidence 667899999999999999988764 35 2 68888874 111 222222333210 1113567
Q ss_pred HHhcccCCcEEEeccCCCCC-----CCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 405 DAVKVIKPTILIGSSGVGRT-----FTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~-----Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
+.++. .|++|.+++.++. ++++.++.|. +.-+|+-++.+
T Consensus 226 ~~~~~--~DvVI~~~~~~~~~~~~li~~~~~~~~~---~g~~ivdv~~~ 269 (361)
T 1pjc_A 226 TAVAE--ADLLIGAVLVPGRRAPILVPASLVEQMR---TGSVIVDVAVD 269 (361)
T ss_dssp HHHHT--CSEEEECCCCTTSSCCCCBCHHHHTTSC---TTCEEEETTCT
T ss_pred HHHcC--CCEEEECCCcCCCCCCeecCHHHHhhCC---CCCEEEEEecC
Confidence 77775 9999998876542 6889999886 55677777754
No 52
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=94.67 E-value=0.34 Score=49.79 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCceeccCCC---chHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 299 THLVFNDDIQ---GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 299 ~~~~FnDDiQ---GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|++.|.--- .+|=-+++.+++..|-.|..|.+.+|.|+|.|..|-.+|+.+.. .|+ +++.+|+.
T Consensus 81 gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~~~~l~g~tvGIIGlG~IG~~vA~~l~~-----~G~-------~V~~~d~~ 148 (380)
T 2o4c_A 81 GIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRG-----LGW-------KVLVCDPP 148 (380)
T ss_dssp TCEEECCTTTTHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECHH
T ss_pred CCEEEeCCCcChHHHHHHHHHHHHHHHhhhhcccCCCEEEEEeCCHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 4566664322 34445899999999999999999999999999999999998864 264 68888863
Q ss_pred CcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc---C-----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 376 GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS---G-----VGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 376 GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S---~-----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
.--. . ......+|.|+++. .|+++=.- . ..++|+++.++.|. +..++.=.|.
T Consensus 149 ~~~~----~-----------~g~~~~~l~ell~~--aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~sR 208 (380)
T 2o4c_A 149 RQAR----E-----------PDGEFVSLERLLAE--ADVISLHTPLNRDGEHPTRHLLDEPRLAALR---PGTWLVNASR 208 (380)
T ss_dssp HHHH----S-----------TTSCCCCHHHHHHH--CSEEEECCCCCSSSSSCCTTSBCHHHHHTSC---TTEEEEECSC
T ss_pred hhhh----c-----------cCcccCCHHHHHHh--CCEEEEeccCccccccchhhhcCHHHHhhCC---CCcEEEECCC
Confidence 2100 0 00112456666665 66665432 1 23466666666664 4556555553
No 53
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=94.62 E-value=0.073 Score=52.70 Aligned_cols=101 Identities=23% Similarity=0.298 Sum_probs=65.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCC---CCCHHHHhc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNLLDAVK 408 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~---~~~L~eav~ 408 (477)
||+|+|| |..|..++..|+. .|+ ...++++|.+-. ......|.+...+ .+ ... ..++.++++
T Consensus 2 KI~IiGa~G~VG~~la~~L~~-----~~~-----~~ev~L~Di~~~--~~~a~dL~~~~~~-~~-l~~~~~t~d~~~a~~ 67 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKN-----SPL-----VSRLTLYDIAHT--PGVAADLSHIETR-AT-VKGYLGPEQLPDCLK 67 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHT-----CTT-----CSEEEEEESSSH--HHHHHHHTTSSSS-CE-EEEEESGGGHHHHHT
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CcEEEEEeCCcc--HHHHHHHhccCcC-ce-EEEecCCCCHHHHhC
Confidence 8999998 9999998877653 354 357999998641 1000011111100 00 011 136888999
Q ss_pred ccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 409 VIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 409 ~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+ +|++|=+.+.+ | ...+++++.|.+++...+|+-.|||.
T Consensus 68 ~--aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv 120 (314)
T 1mld_A 68 G--CDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV 120 (314)
T ss_dssp T--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred C--CCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCc
Confidence 8 99988555443 2 24677888888889998998899998
No 54
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=94.59 E-value=0.047 Score=57.50 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcE
Q 011816 427 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQT 467 (477)
Q Consensus 427 ~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~a 467 (477)
.++++.|.++|+..+++=.|||. .-+|- -+.++++=++
T Consensus 140 ~~i~~~i~~~~P~A~~in~tNP~--~i~t~-a~~~~~~~k~ 177 (477)
T 3u95_A 140 LEIAEKMKKMAPKAYLMQTANPV--FEITQ-AVRRWTGANI 177 (477)
T ss_dssp HHHHHHHHHHCTTCEEEECSSCH--HHHHH-HHHHHHCCCE
T ss_pred HHHHHHHHhhCCCeEEEEecChH--HHHHH-HHHHhCCCCe
Confidence 68999999999999999999998 44443 3345554343
No 55
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=94.28 E-value=0.092 Score=51.51 Aligned_cols=98 Identities=13% Similarity=0.269 Sum_probs=64.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc------hhhccccCC---CCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK------KPWAHEHEP---VNN 402 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k------~~~a~~~~~---~~~ 402 (477)
.||.|+|||+.|.++|..++.. |+ .+++++|.+- ++ +.... ..+...... ..+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~-----g~------~~V~l~D~~~----~~---~~~~~~~l~~~~~~~~~~~~i~~t~d 66 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD-----NL------ADVVLFDIAE----GI---PQGKALDITHSMVMFGSTSKVIGTDD 66 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSSS----SH---HHHHHHHHHHHHHHHTCCCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------ceEEEEeCCc----hH---HHHHHHHHHhhhhhcCCCcEEEECCC
Confidence 5899999999999999998764 54 1599999852 11 11110 011110111 145
Q ss_pred HHHHhcccCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 403 LLDAVKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+ ++++. +|++|=+.+.+. .+.+++++.+.++++.-||+-.|||..
T Consensus 67 ~-~a~~~--aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~ 125 (317)
T 2ewd_A 67 Y-ADISG--SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125 (317)
T ss_dssp G-GGGTT--CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH
T ss_pred H-HHhCC--CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHH
Confidence 6 77876 899886554332 134678888888888999999999973
No 56
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=94.19 E-value=0.1 Score=50.22 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
..|++.+++..|..++..+++|+|+|.+|.++|..+... |. +++++|+. .++ .....+.+.
T Consensus 113 ~~G~~~~l~~~~~~~~~~~v~iiGaG~~g~aia~~L~~~-----g~-------~V~v~~r~----~~~---~~~l~~~~g 173 (275)
T 2hk9_A 113 WIGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKE-----GA-------KVFLWNRT----KEK---AIKLAQKFP 173 (275)
T ss_dssp HHHHHHHHHHHCTTGGGSEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSS----HHH---HHHHTTTSC
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHc-----CC-------EEEEEECC----HHH---HHHHHHHcC
Confidence 348888998888899999999999999999999988653 42 68888874 111 111111110
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCCCCCC--HHHHHHHHcCCCCcEEEEcCC
Q 011816 395 HEHEPVNNLLDAVKVIKPTILIGSSGVGRTFT--KEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 395 ~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft--~evv~~Ma~~~erPIIFaLSN 447 (477)
..-..++.++++. +|++|-+...+ ... ++.+. .....+..+|+-++.
T Consensus 174 --~~~~~~~~~~~~~--aDiVi~atp~~-~~~~~~~~i~-~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 174 --LEVVNSPEEVIDK--VQVIVNTTSVG-LKDEDPEIFN-YDLIKKDHVVVDIIY 222 (275)
T ss_dssp --EEECSCGGGTGGG--CSEEEECSSTT-SSTTCCCSSC-GGGCCTTSEEEESSS
T ss_pred --CeeehhHHhhhcC--CCEEEEeCCCC-CCCCCCCCCC-HHHcCCCCEEEEcCC
Confidence 0112367788875 99999776644 221 11221 122345679999987
No 57
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=94.17 E-value=0.051 Score=53.04 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=63.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch---hchhhccccCC--CCCHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH---FKKPWAHEHEP--VNNLLDA 406 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~---~k~~~a~~~~~--~~~L~ea 406 (477)
.||.|+|||+.|.++|..|+.. |+ ...++++|++- ++.+.+.. +-..+...... ..++ ++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~-----g~-----~~~V~l~d~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~ 66 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ-----GV-----ADDYVFIDANE----AKVKADQIDFQDAMANLEAHGNIVINDW-AA 66 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSH----HHHHHHHHHHHHHGGGSSSCCEEEESCG-GG
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEcCCH----HHHHHHHHHHHhhhhhcCCCeEEEeCCH-HH
Confidence 3899999999999999998754 54 24799999841 11111110 00011100001 1456 67
Q ss_pred hcccCCcEEEeccCCC-------CCC-----------CHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 407 VKVIKPTILIGSSGVG-------RTF-----------TKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 407 v~~vkptvLIG~S~~~-------g~F-----------t~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
++. +|++|=+...+ |.. -+++++.|.++++..+|+-+|||..
T Consensus 67 ~~~--aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~ 126 (309)
T 1hyh_A 67 LAD--ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD 126 (309)
T ss_dssp GTT--CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH
T ss_pred hCC--CCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHH
Confidence 775 89888554432 211 2588888988888888888999983
No 58
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=94.14 E-value=0.36 Score=51.30 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=76.1
Q ss_pred HHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCC
Q 011816 323 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVN 401 (477)
Q Consensus 323 r~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~ 401 (477)
|..+..+...+++|+|+|..|.++|+.+.. .|. +++.+|+.- .+...|.. .-...
T Consensus 266 r~~~~~l~GktV~IiG~G~IG~~~A~~lka-----~Ga-------~Viv~d~~~------------~~~~~A~~~Ga~~~ 321 (494)
T 3ce6_A 266 RGTDALIGGKKVLICGYGDVGKGCAEAMKG-----QGA-------RVSVTEIDP------------INALQAMMEGFDVV 321 (494)
T ss_dssp HHHCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCH------------HHHHHHHHTTCEEC
T ss_pred hccCCCCCcCEEEEEccCHHHHHHHHHHHH-----CCC-------EEEEEeCCH------------HHHHHHHHcCCEEe
Confidence 455668899999999999999999988764 252 688888631 11112211 11124
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 460 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~ 460 (477)
++.++++. +|++|-+++..++++++.++.|. +.-+|.-.+... .|+..+..+
T Consensus 322 ~l~e~l~~--aDvVi~atgt~~~i~~~~l~~mk---~ggilvnvG~~~--~eId~~aL~ 373 (494)
T 3ce6_A 322 TVEEAIGD--ADIVVTATGNKDIIMLEHIKAMK---DHAILGNIGHFD--NEIDMAGLE 373 (494)
T ss_dssp CHHHHGGG--CSEEEECSSSSCSBCHHHHHHSC---TTCEEEECSSSG--GGBCHHHHH
T ss_pred cHHHHHhC--CCEEEECCCCHHHHHHHHHHhcC---CCcEEEEeCCCC--CccCHHHHH
Confidence 68888876 99999998888899999999996 567887788765 466655543
No 59
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=94.03 E-value=0.067 Score=53.37 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=76.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCC----CchhchhhccccCCC---CCHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS----LQHFKKPWAHEHEPV---NNLL 404 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~----l~~~k~~~a~~~~~~---~~L~ 404 (477)
.||.|+|||+.|.++|.++... |+ -+++++|.+ .++-+. +.+.. .+....... .++.
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~-----g~------~~V~L~D~~----~~~~~~~~~~l~~~~-~~~~~~~~i~~t~d~~ 73 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR-----EL------ADVVLYDVV----KGMPEGKALDLSHVT-SVVDTNVSVRAEYSYE 73 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSS----SSHHHHHHHHHHHHH-HHTTCCCCEEEECSHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------CeEEEEECC----hhHHHHHHHHHHhhh-hccCCCCEEEEeCCHH
Confidence 5899999999999999998763 53 149999985 221110 11111 111111122 5788
Q ss_pred HHhcccCCcEEEeccCCC---CC----------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--
Q 011816 405 DAVKVIKPTILIGSSGVG---RT----------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-- 463 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~---g~----------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t-- 463 (477)
+++++ +|++|=+.+.+ |. +-+++.+.|.++++.-+|+--|||..- +.+-+.+.+
T Consensus 74 ea~~~--aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~---~t~~~~~~~~~ 148 (331)
T 1pzg_A 74 AALTG--ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDC---MVKVMCEASGV 148 (331)
T ss_dssp HHHTT--CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH---HHHHHHHHHCC
T ss_pred HHhCC--CCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHH---HHHHHHHhcCC
Confidence 89987 99998665433 32 246888899999999898888999842 344444444
Q ss_pred CCcEEEEcC
Q 011816 464 KVQTIILQH 472 (477)
Q Consensus 464 ~G~aifAsG 472 (477)
...-+|++|
T Consensus 149 ~~~rviG~g 157 (331)
T 1pzg_A 149 PTNMICGMA 157 (331)
T ss_dssp CGGGEEECC
T ss_pred ChhcEEecc
Confidence 233567765
No 60
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=94.01 E-value=0.027 Score=55.72 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=76.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc--CCCCCHHHHhccc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~~v 410 (477)
||.|+|||..|.++|..|+.. |+ ...+.++|.+-=..++-.-++.+...+|-... ....+ .+++++
T Consensus 2 kI~ViGaG~vG~~la~~l~~~-----~~-----~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~- 69 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLN-----LD-----VDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG- 69 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SC-----CSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC-
Confidence 799999999999999887653 43 24799999742111100000222111121110 00135 788887
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcC
Q 011816 411 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 411 kptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsG 472 (477)
+|++|=+.+.+ |- .-+++++.|.++++..+|+-.|||. .....-+++.+. -+-+|++|
T Consensus 70 -aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPv---d~~t~~~~k~~g~p~~rviG~g 143 (294)
T 1oju_A 70 -SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM---DVMTYIMWKESGKPRNEVFGMG 143 (294)
T ss_dssp -CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH---HHHHHHHHHHSCCCTTSEEECS
T ss_pred -CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcc---hHHHHHHHHhcCCCHHHEeecc
Confidence 99887555443 31 1256778889999999999999998 455666666542 24567776
No 61
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=93.98 E-value=0.074 Score=52.55 Aligned_cols=125 Identities=16% Similarity=0.253 Sum_probs=72.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCC-CCHHHHhccc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~-~~L~eav~~v 410 (477)
.||.|+|||..|.++|..+... |+ ...|+++|.+--..+.....+.+. .++....... .+..+++++
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~-----~~-----~~ev~l~Di~~~~~~~~~~dl~~~-~~~~~~~~~i~~~~~~al~~- 74 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ-----GI-----ADEIVLIDANESKAIGDAMDFNHG-KVFAPKPVDIWHGDYDDCRD- 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHHHHHH-TTSSSSCCEEEECCGGGTTT-
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCcchHHHHHhhHHHH-hhhcCCCeEEEcCcHHHhCC-
Confidence 5999999999999999776542 44 257999998521000000001111 1111100000 234567776
Q ss_pred CCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcC
Q 011816 411 KPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 411 kptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsG 472 (477)
+|++|=+.+.+. ...+++++.|.++++..++|-.|||. -...+-+++.+. ..-+|++|
T Consensus 75 -aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv---~~~~~~~~~~s~~p~~rviG~g 148 (316)
T 1ldn_A 75 -ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV---DILTYATWKFSGLPHERVIGSG 148 (316)
T ss_dssp -CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH---HHHHHHHHHHHTCCGGGEEECT
T ss_pred -CCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCch---HHHHHHHHHHhCCCHHHEEecc
Confidence 999986554442 23467888888888888888899998 334444544321 12355554
No 62
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=93.94 E-value=0.13 Score=48.52 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=62.2
Q ss_pred hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc--cCCCCCCCc-hhchhhcccc--CC
Q 011816 325 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQ-HFKKPWAHEH--EP 399 (477)
Q Consensus 325 ~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi--~~~r~~~l~-~~k~~~a~~~--~~ 399 (477)
...++...||.|+|+|..|.++|..|... | -+++++|++--- .......+. .....++... ..
T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~-----G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALADL-----G-------HEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH 80 (245)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE
T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee
Confidence 45578889999999999999999998763 5 268888875211 000000000 0012233221 12
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEEcCCCC
Q 011816 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSNPT 449 (477)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~M-a~~~erPIIFaLSNPt 449 (477)
..++.|+++. +|++| ++..+. ...++++.+ +..-+..||.-+|||.
T Consensus 81 ~~~~~e~~~~--aDvVi-lavp~~-~~~~~~~~i~~~~l~g~ivi~~s~~~ 127 (245)
T 3dtt_A 81 LAAFADVAAG--AELVV-NATEGA-SSIAALTAAGAENLAGKILVDIANPL 127 (245)
T ss_dssp EEEHHHHHHH--CSEEE-ECSCGG-GHHHHHHHHCHHHHTTSEEEECCCCE
T ss_pred ccCHHHHHhc--CCEEE-EccCcH-HHHHHHHHhhhhhcCCCEEEECCCCC
Confidence 3578999987 89887 444332 334666665 3333677999999974
No 63
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=93.88 E-value=0.54 Score=46.51 Aligned_cols=121 Identities=15% Similarity=0.095 Sum_probs=77.8
Q ss_pred CCCceeccCCCc---hHHHHHHHHHHHHHH----------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhC
Q 011816 298 TTHLVFNDDIQG---TASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQT 358 (477)
Q Consensus 298 ~~~~~FnDDiQG---TaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~ 358 (477)
..|+|.|----. +|=-+++.+|+..|- .+..+.+.+|.|+|.|..|..+|+.+...
T Consensus 90 ~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~----- 164 (313)
T 2ekl_A 90 RNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAM----- 164 (313)
T ss_dssp TTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHHHHHHHHT-----
T ss_pred CCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHHHHHHHHC-----
Confidence 456777654323 344578888888775 35689999999999999999999988642
Q ss_pred CCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHH
Q 011816 359 KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMA 434 (477)
Q Consensus 359 G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma 434 (477)
|+ +++.+|+.. +.. ..+ .+ .-...++.|+++. .|+++=.-- ..++++++.++.|.
T Consensus 165 G~-------~V~~~d~~~-------~~~-~~~-~~---g~~~~~l~ell~~--aDvVvl~~P~~~~t~~li~~~~l~~mk 223 (313)
T 2ekl_A 165 GM-------KVLAYDILD-------IRE-KAE-KI---NAKAVSLEELLKN--SDVISLHVTVSKDAKPIIDYPQFELMK 223 (313)
T ss_dssp TC-------EEEEECSSC-------CHH-HHH-HT---TCEECCHHHHHHH--CSEEEECCCCCTTSCCSBCHHHHHHSC
T ss_pred CC-------EEEEECCCc-------chh-HHH-hc---CceecCHHHHHhh--CCEEEEeccCChHHHHhhCHHHHhcCC
Confidence 64 688888641 100 000 00 0001367787776 787774421 23567778887775
Q ss_pred cCCCCcEEEEcCC
Q 011816 435 SFNEKPLILALSN 447 (477)
Q Consensus 435 ~~~erPIIFaLSN 447 (477)
+..++.-.|.
T Consensus 224 ---~ga~lIn~ar 233 (313)
T 2ekl_A 224 ---DNVIIVNTSR 233 (313)
T ss_dssp ---TTEEEEESSC
T ss_pred ---CCCEEEECCC
Confidence 5667776665
No 64
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=93.80 E-value=0.1 Score=52.51 Aligned_cols=97 Identities=23% Similarity=0.355 Sum_probs=61.1
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCCCHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~ 404 (477)
+...+++|+|+|..|..+|+.+.. .|. +++++|++- .+ +...+..+... .....++.
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~-----~Ga-------~V~~~d~~~----~~---~~~~~~~~g~~~~~~~~~~~~l~ 224 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALG-----MGA-------QVTILDVNH----KR---LQYLDDVFGGRVITLTATEANIK 224 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESCH----HH---HHHHHHHTTTSEEEEECCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEECCH----HH---HHHHHHhcCceEEEecCCHHHHH
Confidence 778999999999999999998764 363 688888741 11 11111111110 01123577
Q ss_pred HHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 405 DAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
++++. .|++|.+.+.++ .++++.++.|. +.-+|.-+|.+.
T Consensus 225 ~~~~~--~DvVi~~~g~~~~~~~~li~~~~l~~mk---~gg~iV~v~~~~ 269 (369)
T 2eez_A 225 KSVQH--ADLLIGAVLVPGAKAPKLVTRDMLSLMK---EGAVIVDVAVDQ 269 (369)
T ss_dssp HHHHH--CSEEEECCC-------CCSCHHHHTTSC---TTCEEEECC---
T ss_pred HHHhC--CCEEEECCCCCccccchhHHHHHHHhhc---CCCEEEEEecCC
Confidence 88876 999999876543 46999999996 455666666543
No 65
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=93.74 E-value=0.11 Score=45.20 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=54.6
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc-hhchhhcc-ccCCCCCHH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-HFKKPWAH-EHEPVNNLL 404 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~-~~k~~~a~-~~~~~~~L~ 404 (477)
+.+...+|+|+|+|..|..+|+.+.. .| .+++++|++- .+.+.+. .....+.. +......|.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~-----~g-------~~V~vid~~~----~~~~~~~~~~g~~~~~~d~~~~~~l~ 78 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASS-----SG-------HSVVVVDKNE----YAFHRLNSEFSGFTVVGDAAEFETLK 78 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEESCG----GGGGGSCTTCCSEEEESCTTSHHHHH
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEECCH----HHHHHHHhcCCCcEEEecCCCHHHHH
Confidence 34566799999999999999998865 24 3788898742 1111111 11111111 111111233
Q ss_pred HH-hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 011816 405 DA-VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 448 (477)
Q Consensus 405 ea-v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 448 (477)
++ ++ ++|++|-+.... .....+++.+...+....|++.+|-
T Consensus 79 ~~~~~--~ad~Vi~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 79 ECGME--KADMVFAFTNDD-STNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp TTTGG--GCSEEEECSSCH-HHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred HcCcc--cCCEEEEEeCCc-HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 33 44 489999777643 3334444444433555555555553
No 66
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=93.68 E-value=0.41 Score=49.33 Aligned_cols=118 Identities=10% Similarity=0.098 Sum_probs=81.6
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
..|.+.|--- +.+|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|+
T Consensus 83 ~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~-----G~-------~V~~~d~ 150 (381)
T 3oet_A 83 AGIGFSAAPGCNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEAL-----GI-------RTLLCDP 150 (381)
T ss_dssp TTCEEECCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECH
T ss_pred CCEEEEECCCcCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3566666533 2445568999999999999999999999999999999999998643 65 6888886
Q ss_pred CCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC--------CCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 375 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG--------VGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 375 ~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~--------~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.. . . .. ......+|.|+++. .|+++=.-- ..++|+++.++.|. +..|+.=.|
T Consensus 151 ~~----~--~-~~--------~~~~~~sl~ell~~--aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 210 (381)
T 3oet_A 151 PR----A--A-RG--------DEGDFRTLDELVQE--ADVLTFHTPLYKDGPYKTLHLADETLIRRLK---PGAILINAC 210 (381)
T ss_dssp HH----H--H-TT--------CCSCBCCHHHHHHH--CSEEEECCCCCCSSTTCCTTSBCHHHHHHSC---TTEEEEECS
T ss_pred Ch----H--H-hc--------cCcccCCHHHHHhh--CCEEEEcCcCCccccccchhhcCHHHHhcCC---CCcEEEECC
Confidence 21 0 0 00 11123568888876 787764321 34577888888885 566777666
Q ss_pred C
Q 011816 447 N 447 (477)
Q Consensus 447 N 447 (477)
.
T Consensus 211 R 211 (381)
T 3oet_A 211 R 211 (381)
T ss_dssp C
T ss_pred C
Confidence 5
No 67
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=93.66 E-value=0.12 Score=50.00 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=52.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
..||.|+|+|..|.++|..+... |.+ ..+|+++|++ .+ .+...++.|- .....++.++++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~-----g~~----~~~V~v~dr~----~~---~~~~l~~~~g--i~~~~~~~~~~~~- 63 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN-----GYD----PNRICVTNRS----LD---KLDFFKEKCG--VHTTQDNRQGALN- 63 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT-----TCC----GGGEEEECSS----SH---HHHHHHHTTC--CEEESCHHHHHSS-
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-----CCC----CCeEEEEeCC----HH---HHHHHHHHcC--CEEeCChHHHHhc-
Confidence 46899999999999999988763 642 3478888874 11 1221111110 0011345555554
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC--CCCcEEEEcCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMASF--NEKPLILALSNPT 449 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~--~erPIIFaLSNPt 449 (477)
+|++| ++..+ -..+++++.+..+ .++.+|...++..
T Consensus 64 -aDvVi-lav~p-~~~~~vl~~l~~~~l~~~~iiiS~~agi 101 (280)
T 3tri_A 64 -ADVVV-LAVKP-HQIKMVCEELKDILSETKILVISLAVGV 101 (280)
T ss_dssp -CSEEE-ECSCG-GGHHHHHHHHHHHHHTTTCEEEECCTTC
T ss_pred -CCeEE-EEeCH-HHHHHHHHHHHhhccCCCeEEEEecCCC
Confidence 55555 23233 3345555555432 3444555555554
No 68
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=93.64 E-value=0.056 Score=53.11 Aligned_cols=123 Identities=16% Similarity=0.234 Sum_probs=74.3
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc--CCcccCC-CCCCCchhchhhccccCC-CCCHHHH
Q 011816 332 HRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KGLIVSS-RKDSLQHFKKPWAHEHEP-VNNLLDA 406 (477)
Q Consensus 332 ~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~--~GLi~~~-r~~~l~~~k~~~a~~~~~-~~~L~ea 406 (477)
.||+|.| ||..|..++..|+. .|+ ...+.|+|. +-=-.++ ..+ +.+... +..+..- ..+ .++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~-----~~~-----~~el~L~Di~~~~~~~~~~~~d-l~~~~~-~~~~~~v~~~~-~~a 67 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIAL-----RDI-----ADEVVFVDIPDKEDDTVGQAAD-TNHGIA-YDSNTRVRQGG-YED 67 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-----TTC-----CSEEEEECCGGGHHHHHHHHHH-HHHHHT-TTCCCEEEECC-GGG
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEcCCCChhhHHHHHHH-HHHHHh-hCCCcEEEeCC-HHH
Confidence 3899999 99999999888754 243 246999997 2100000 001 211111 1111000 023 677
Q ss_pred hcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEE
Q 011816 407 VKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIIL 470 (477)
Q Consensus 407 v~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifA 470 (477)
+++ +|++|=+.+.+ |. .++++++.|.+++.+.+|+--|||. ....+-+++.+. -.-+|+
T Consensus 68 ~~~--aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv---~~~~~~~~~~~~~p~~rviG 142 (303)
T 1o6z_A 68 TAG--SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPV---DLLNRHLYEAGDRSREQVIG 142 (303)
T ss_dssp GTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSH---HHHHHHHHHHSSSCGGGEEE
T ss_pred hCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChH---HHHHHHHHHHcCCCHHHeee
Confidence 877 99998666544 32 5678889999999999999999997 445555555431 124666
Q ss_pred cC
Q 011816 471 QH 472 (477)
Q Consensus 471 sG 472 (477)
+|
T Consensus 143 ~g 144 (303)
T 1o6z_A 143 FG 144 (303)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 69
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=93.59 E-value=0.1 Score=51.19 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=89.2
Q ss_pred HHHHHHHHH-HhcCCCeeeeeecCCcccHHHHHHHHcC--------CCceeccC--CCchHHHHHHHHHHHHHHhCCCCc
Q 011816 262 LDEFMSAVK-QNYGEKVLIQFEDFANHNAFELLAKYGT--------THLVFNDD--IQGTASVVLAGVVAALKLIGGTLA 330 (477)
Q Consensus 262 idefv~av~-~~fGp~~lIq~EDf~~~~af~iL~ryr~--------~~~~FnDD--iQGTaaV~LAgll~Alr~~g~~l~ 330 (477)
+.++++.++ ..|.+ ++.--=-...+++++++... +..++++| ..|.-.= -.|++.+|+..|.+++
T Consensus 50 l~~~~~~~~~~~~~G---~nVTiP~K~~v~~~ld~l~~~A~~iGAVNTv~~~~~g~l~G~NTD-~~G~~~~L~~~~~~l~ 125 (281)
T 3o8q_A 50 FTEAAKHFFAQGGRG---CNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTD-GEGLVQDLLAQQVLLK 125 (281)
T ss_dssp HHHHHHHHHHTTCCE---EEECTTSHHHHHHHCSEECHHHHHHTCCSEEEECTTSCEEEECCH-HHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHhCCCCE---EEECCccHHHHHHHHhhcCHHHHhhCeeeEEEEcCCCcEEEEecH-HHHHHHHHHHhCCCcc
Confidence 567777665 35544 54433333445666554421 23345555 2442211 4688888988899999
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-CCCCCHHHHhcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKV 409 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~~ 409 (477)
+.+++|+|||.+|.+++..|.. .|. ++|+++++. .++ .....+.+.... -...++.++.+
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~-----~G~------~~v~v~~R~----~~~---a~~la~~~~~~~~~~~~~~~~l~~- 186 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLD-----QQP------ASITVTNRT----FAK---AEQLAELVAAYGEVKAQAFEQLKQ- 186 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT-----TCC------SEEEEEESS----HHH---HHHHHHHHGGGSCEEEEEGGGCCS-
T ss_pred CCEEEEECchHHHHHHHHHHHh-----cCC------CeEEEEECC----HHH---HHHHHHHhhccCCeeEeeHHHhcC-
Confidence 9999999999888888877754 364 589988874 222 111112222100 00113344333
Q ss_pred cCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEEcC-CCC
Q 011816 410 IKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALS-NPT 449 (477)
Q Consensus 410 vkptvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLS-NPt 449 (477)
++|++|-++..+- .|..+. ..+..+|+=|+ ||.
T Consensus 187 -~aDiIInaTp~gm~~~~~~l~~~~------l~~~~~V~DlvY~P~ 225 (281)
T 3o8q_A 187 -SYDVIINSTSASLDGELPAIDPVI------FSSRSVCYDMMYGKG 225 (281)
T ss_dssp -CEEEEEECSCCCC----CSCCGGG------EEEEEEEEESCCCSS
T ss_pred -CCCEEEEcCcCCCCCCCCCCCHHH------hCcCCEEEEecCCCc
Confidence 5899998776541 133222 12456888774 663
No 70
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=93.58 E-value=0.095 Score=51.67 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
.|++.+|+-.|.++++.+++|+|||.||.+++..|.. .|. ++|+++++. .+|. +.+|.
T Consensus 107 ~G~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~-----~G~------~~v~v~nRt----~~ka-------~~La~ 164 (282)
T 3fbt_A 107 IGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKD-----NFA------KDIYVVTRN----PEKT-------SEIYG 164 (282)
T ss_dssp HHHHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHH-----TTC------SEEEEEESC----HHHH-------HHHCT
T ss_pred HHHHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHHH-------HHHHH
Confidence 7899999988999999999999999998888888765 364 589988873 2221 11221
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC---C----CCCHHHHHHHHcCCCCcEEEEcC-CCC
Q 011816 396 EHEPVNNLLDAVKVIKPTILIGSSGVG---R----TFTKEVIEAMASFNEKPLILALS-NPT 449 (477)
Q Consensus 396 ~~~~~~~L~eav~~vkptvLIG~S~~~---g----~Ft~evv~~Ma~~~erPIIFaLS-NPt 449 (477)
.-. ..++.+.-+ +++|++|-++..| . .+..+.++ +..+||=+. ||.
T Consensus 165 ~~~-~~~~~~l~~-l~~DivInaTp~Gm~~~~~~~pi~~~~l~------~~~~v~DlvY~P~ 218 (282)
T 3fbt_A 165 EFK-VISYDELSN-LKGDVIINCTPKGMYPKEGESPVDKEVVA------KFSSAVDLIYNPV 218 (282)
T ss_dssp TSE-EEEHHHHTT-CCCSEEEECSSTTSTTSTTCCSSCHHHHT------TCSEEEESCCSSS
T ss_pred hcC-cccHHHHHh-ccCCEEEECCccCccCCCccCCCCHHHcC------CCCEEEEEeeCCC
Confidence 100 011222111 2699999877543 1 24445442 567888775 775
No 71
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=93.54 E-value=0.13 Score=50.84 Aligned_cols=120 Identities=15% Similarity=0.227 Sum_probs=74.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHHHhccc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~v 410 (477)
.||.|+|||..|.++|..++.. |+ ...++|+|.+-= ..+....+.+ +... .....++ ++++.
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~-----g~-----~~ev~L~Di~~~-~~g~a~dl~~----~~~~~i~~t~d~-~~l~~- 77 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK-----GI-----ADRLVLLDLSEG-TKGATMDLEI----FNLPNVEISKDL-SASAH- 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECCC------CHHHHHH----HTCTTEEEESCG-GGGTT-
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CC-----CCEEEEEcCCcc-hHHHHHHHhh----hcCCCeEEeCCH-HHHCC-
Confidence 6899999999999999998653 54 268999998531 1111001211 2111 0111466 77887
Q ss_pred CCcEEEeccCCC--C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcC
Q 011816 411 KPTILIGSSGVG--R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 411 kptvLIG~S~~~--g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsG 472 (477)
+|++|=..+.+ | -+-+++++.|.++++..+|+-.|||.. +..+-+++.+. -.-+|++|
T Consensus 78 -aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~---~~t~~~~~~~~~p~~rviG~g 150 (303)
T 2i6t_A 78 -SKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE---IMTYVTWKLSTFPANRVIGIG 150 (303)
T ss_dssp -CSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHH---HHHHHHHHHHCCCGGGEEECT
T ss_pred -CCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHH---HHHHHHHHhcCCCHHHeeCCC
Confidence 99998655443 1 024678888999999999988999983 45555555321 22466765
No 72
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=93.47 E-value=0.055 Score=53.89 Aligned_cols=119 Identities=17% Similarity=0.265 Sum_probs=72.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC----CCchhchhhccccCCC---CCHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEPV---NNLL 404 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~~a~~~~~~---~~L~ 404 (477)
.||.|+|||+.|.++|.+++. .|+ -+++++|.+ .++-+ .+.+...++.. ...+ .++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~-----~g~------~~V~L~Di~----~~~l~~~~~~l~~~~~~~~~-~~~i~~t~d~- 77 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQ-----KDL------GDVYMFDII----EGVPQGKALDLNHCMALIGS-PAKIFGENNY- 77 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC------CEEEEECSS----TTHHHHHHHHHHHHHHHHTC-CCCEEEESCG-
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEECC----HHHHHHHHHHHHhHhhccCC-CCEEEECCCH-
Confidence 589999999999999988765 254 139999985 21111 01111111110 1111 466
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEE
Q 011816 405 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTI 468 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~ai 468 (477)
++++. +|++|=+.+.+ |. +-+++.+.+.++++.-+|+-.|||.+ - ..+-+.+.+ ...-+
T Consensus 78 ~al~~--aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~--~-~t~~~~~~~~~~~~rv 152 (328)
T 2hjr_A 78 EYLQN--SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD--A-MVYYFKEKSGIPANKV 152 (328)
T ss_dssp GGGTT--CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH--H-HHHHHHHHHCCCGGGE
T ss_pred HHHCC--CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchH--H-HHHHHHHhcCCChhhE
Confidence 78887 99988554333 21 24678888888888888777799984 2 344444433 34456
Q ss_pred EEcC
Q 011816 469 ILQH 472 (477)
Q Consensus 469 fAsG 472 (477)
|++|
T Consensus 153 iG~~ 156 (328)
T 2hjr_A 153 CGMS 156 (328)
T ss_dssp EESC
T ss_pred EEeC
Confidence 7776
No 73
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=93.39 E-value=0.068 Score=53.03 Aligned_cols=123 Identities=13% Similarity=0.053 Sum_probs=72.0
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC--Ccc--cCCCCCCCchhchhhccccCCCCCHHH
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLI--VSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~--GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
..||+|.|| |..|..++..|+. .|+-...-...++++|.. ..- ..+....|.+.-.++..+.....++.+
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~-----~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~ 79 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIAN-----GDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMT 79 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHT-----TTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHh-----CCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHH
Confidence 359999998 9999998887764 243111112479999975 100 000000011110122222112257899
Q ss_pred HhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 406 AVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 406 av~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
++++ +|++|=+.+.+ | ..++++++.+.+++ .+.+|+-.|||. -.+..-+.+.+
T Consensus 80 al~~--aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv---~~~t~~~~~~~ 147 (329)
T 1b8p_A 80 AFKD--ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA---NTNAYIAMKSA 147 (329)
T ss_dssp HTTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH---HHHHHHHHHTC
T ss_pred HhCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch---HHHHHHHHHHc
Confidence 9998 89988665544 2 13578889999986 787777789998 33444444443
No 74
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=93.27 E-value=0.68 Score=49.48 Aligned_cols=188 Identities=19% Similarity=0.249 Sum_probs=121.1
Q ss_pred CChhhhHHHHHHHHHHHHH--hcCCCeeeeeecCCcccH--HHHHHHHcC---CC------ceeccC---------CCch
Q 011816 253 ATGQEYAELLDEFMSAVKQ--NYGEKVLIQFEDFANHNA--FELLAKYGT---TH------LVFNDD---------IQGT 310 (477)
Q Consensus 253 ~~g~~y~~~idefv~av~~--~fGp~~lIq~EDf~~~~a--f~iL~ryr~---~~------~~FnDD---------iQGT 310 (477)
.+-.|-..|...||..+.+ ..||..-|-=+|++..-. --+.+.|+. .. ++-..- -.-|
T Consensus 136 ~s~~El~r~~r~f~~eL~~~~~IGp~~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eAT 215 (501)
T 3mw9_A 136 YTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISAT 215 (501)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCch
Confidence 3556778889999999985 788988888899986422 225667742 11 111111 1234
Q ss_pred HHHHHHHHHH------HHHHhCC--CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCC
Q 011816 311 ASVVLAGVVA------ALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 382 (477)
Q Consensus 311 aaV~LAgll~------Alr~~g~--~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r 382 (477)
|-=+.-++-+ +++..|. .|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+...
T Consensus 216 g~GV~~~~~~~l~~~~~~~~~G~~~~l~g~tVaVQG~GNVG~~aa~~L~e~-----Ga------kVVavsDs~G~iyd~~ 284 (501)
T 3mw9_A 216 GRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRF-----GA------KCITVGESDGSIWNPD 284 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEECSSCEEECTT
T ss_pred HHHHHHHHHHHHhhhHHHHHcCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC
Confidence 4444444443 3456675 48999999999999999999998753 53 4455899999999764
Q ss_pred CCCCchhch-hhccccC------CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCCC
Q 011816 383 KDSLQHFKK-PWAHEHE------PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSEC 454 (477)
Q Consensus 383 ~~~l~~~k~-~~a~~~~------~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E~ 454 (477)
.++..+. .+..... ....+.+.+-.++.||||=+..+ +.+|++-++.+ .-.||.--+| |++ +|
T Consensus 285 --Gid~~~l~~~k~~~g~i~~~~~a~~~~~~il~~~~DIliPcA~~-n~I~~~na~~l----~akiV~EgAN~p~T-~e- 355 (501)
T 3mw9_A 285 --GIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASE-KQLTKSNAPRV----KAKIIAEGANGPTT-PE- 355 (501)
T ss_dssp --CCCHHHHHHHHHHHSSSTTCTTSEEECSCGGGSCCSEEEECSSS-CCBCTTTGGGC----CCSEEECCSSSCBC-HH-
T ss_pred --CCCHHHHHHHHHhcCCeecccCceeeccccccccceEEeecccc-CccCHhHHHHc----CceEEEeCCCCcCC-HH-
Confidence 3433221 1211111 00011112445689999988876 69999998887 4789999999 542 33
Q ss_pred CHHHHhc
Q 011816 455 TAEEAYT 461 (477)
Q Consensus 455 tpe~A~~ 461 (477)
+++.+.
T Consensus 356 -A~~iL~ 361 (501)
T 3mw9_A 356 -ADKIFL 361 (501)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 345554
No 75
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=93.24 E-value=0.69 Score=45.88 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=48.2
Q ss_pred CCCceeccCCCc---hHHHHHHHHHHHHHHh---------------------CCCCccceEEEeCcchHHHHHHHHHHHH
Q 011816 298 TTHLVFNDDIQG---TASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 298 ~~~~~FnDDiQG---TaaV~LAgll~Alr~~---------------------g~~l~d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
..|+|.|----. +|=-+++.+|+..|-. |..|.+.+|.|+|+|..|..+|+.+..
T Consensus 98 ~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~- 176 (330)
T 2gcg_A 98 RGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKP- 176 (330)
T ss_dssp TTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGG-
T ss_pred CCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHH-
Confidence 567777764333 3444788888887622 356889999999999999999998753
Q ss_pred HHhhCCCChhhhcCeEEEEccC
Q 011816 354 ISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 354 ~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|. +++.+|+.
T Consensus 177 ----~G~-------~V~~~d~~ 187 (330)
T 2gcg_A 177 ----FGV-------QRFLYTGR 187 (330)
T ss_dssp ----GTC-------CEEEEESS
T ss_pred ----CCC-------EEEEECCC
Confidence 254 68888864
No 76
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=93.15 E-value=0.034 Score=58.64 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=78.7
Q ss_pred cceEEEeCcchH-HHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc-c--ccCC---CCCH
Q 011816 331 EHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-H--EHEP---VNNL 403 (477)
Q Consensus 331 d~riv~~GAGsA-g~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a-~--~~~~---~~~L 403 (477)
..||.|+|||+. +.++|..|+.. ..+++ ...++|+|.+- ++.+........+. . .... ..++
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~---~~~l~----~~eV~L~Di~~----e~~~~~~~~~~~~l~~~~~~~~I~~t~D~ 96 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDH---LEEFP----IRKLKLYDNDK----ERQDRIAGACDVFIREKAPDIEFAATTDP 96 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHT---TTTSC----EEEEEEECSCH----HHHHHHHHHHHHHHHHHCTTSEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC---CCCCC----CCEEEEEeCCH----HHHHHHHHHHHHHhccCCCCCEEEEECCH
Confidence 469999999996 55566665431 01442 35799999852 22111111112221 1 1111 2589
Q ss_pred HHHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 404 LDAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
.+++++ +|++|=+.+.++. .=+++++.|.++++..+|+-.|||.
T Consensus 97 ~eal~~--AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPv 174 (472)
T 1u8x_X 97 EEAFTD--VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPA 174 (472)
T ss_dssp HHHHSS--CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCH
T ss_pred HHHHcC--CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 999998 9999866655321 1358889999999999999999998
Q ss_pred CCCCCCHHHHhcccCCcEEEEcC
Q 011816 450 SQSECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 450 ~~~E~tpe~A~~~t~G~aifAsG 472 (477)
-+..+-+++.+...-+|++|
T Consensus 175 ---di~T~~~~k~~p~~rViG~c 194 (472)
T 1u8x_X 175 ---AIVAEATRRLRPNSKILNIC 194 (472)
T ss_dssp ---HHHHHHHHHHSTTCCEEECC
T ss_pred ---HHHHHHHHHhCCCCCEEEeC
Confidence 34555566655443577765
No 77
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=93.14 E-value=0.061 Score=53.27 Aligned_cols=128 Identities=14% Similarity=0.256 Sum_probs=76.4
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCC-CCHHHHh
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAV 407 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~-~~L~eav 407 (477)
....||.|+|||..|..+|-.|+.. |+ ...++++|.+-=..++....+.+. .+|....-.. .+..+++
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~-----~~-----~~ei~L~Di~~~~~~g~~~dl~~~-~~~~~~~~~v~~~~~~a~ 72 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQ-----SI-----VDELVIIDLDTEKVRGDVMDLKHA-TPYSPTTVRVKAGEYSDC 72 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHH-----CS-----CSEEEEECSCHHHHHHHHHHHHHH-GGGSSSCCEEEECCGGGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCChhHhhhhhhhHHhh-hhhcCCCeEEEeCCHHHh
Confidence 3457999999999999998876542 44 258999997510000000012222 2332110001 1347778
Q ss_pred cccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEc
Q 011816 408 KVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIILQ 471 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifAs 471 (477)
++ +|++|=+.+.+.. +=+++++.|.++++..+|+-.|||. -...+-+++.+ .-.-+|++
T Consensus 73 ~~--aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv---~~~t~~~~k~~~~p~~rviG~ 147 (317)
T 3d0o_A 73 HD--ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPV---DILAYATWKFSGLPKERVIGS 147 (317)
T ss_dssp TT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH---HHHHHHHHHHHCCCGGGEEEC
T ss_pred CC--CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcH---HHHHHHHHHHhCCCHHHEEec
Confidence 87 9999866554421 2246777788899999999999998 34455555543 11246666
Q ss_pred C
Q 011816 472 H 472 (477)
Q Consensus 472 G 472 (477)
|
T Consensus 148 g 148 (317)
T 3d0o_A 148 G 148 (317)
T ss_dssp T
T ss_pred C
Confidence 5
No 78
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Probab=93.12 E-value=0.076 Score=55.81 Aligned_cols=126 Identities=16% Similarity=0.210 Sum_probs=75.6
Q ss_pred CccceEEEeCcchH--HHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc---cCCCCCH
Q 011816 329 LAEHRFLFLGAGEA--GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (477)
Q Consensus 329 l~d~riv~~GAGsA--g~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~---~~~~~~L 403 (477)
++..||.|+|||+. |.|++..|+.. ..+ . ..|+|+|.+- ++-+.+....+.+.+. -.-..++
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~----~~~----~-geV~L~Di~~----e~le~~~~~~~~l~~~~~~I~~TtD~ 69 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSID----ERM----S-GTVALYDLDF----EAAQKNEVIGNHSGNGRWRYEAVSTL 69 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHC----SSC----C-EEEEEECSSH----HHHHHHHHHHTTSTTSCEEEEEESSH
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhc----ccc----C-CeEEEEeCCH----HHHHHHHHHHHHHhccCCeEEEECCH
Confidence 45679999999995 78999888752 222 2 3899999751 1100000000001110 0112589
Q ss_pred HHHhcccCCcEEEeccCCC---------------CC---------------------CCHHHHHHHHcCCCCcEEEEcCC
Q 011816 404 LDAVKVIKPTILIGSSGVG---------------RT---------------------FTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~---------------g~---------------------Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
.||+++ +|++|=.-.+| |. .-.++++.|.++++..+++-.||
T Consensus 70 ~eAl~d--ADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tN 147 (450)
T 3fef_A 70 KKALSA--ADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTN 147 (450)
T ss_dssp HHHHTT--CSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred HHHhcC--CCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999998 99888544322 22 13577888889999999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEEcC
Q 011816 448 PTSQSECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 448 Pt~~~E~tpe~A~~~t~G~aifAsG 472 (477)
|. . +..+-+++.....-+|+.+
T Consensus 148 Pv--d-i~t~~~~k~~p~~rviG~C 169 (450)
T 3fef_A 148 PM--S-VCTRVLYKVFPGIKAIGCC 169 (450)
T ss_dssp SH--H-HHHHHHHHHCTTCEEEECC
T ss_pred ch--H-HHHHHHHHHCCCCCEEEeC
Confidence 98 3 3334444422333455543
No 79
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=93.07 E-value=0.15 Score=48.47 Aligned_cols=104 Identities=22% Similarity=0.266 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
.|++.+++..|.++++ +++|+|+|.+|.++|..+.. .|. +++++|++ .++ .....+.|..
T Consensus 102 ~g~~~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~-----~g~-------~v~v~~r~----~~~---~~~l~~~~~~ 161 (263)
T 2d5c_A 102 PGFLEALKAGGIPLKG-PALVLGAGGAGRAVAFALRE-----AGL-------EVWVWNRT----PQR---ALALAEEFGL 161 (263)
T ss_dssp HHHHHHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS----HHH---HHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEECC----HHH---HHHHHHHhcc
Confidence 5888999988889999 99999999999999988764 242 68888874 111 1111111211
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCCCCCC--HHHHHHHHcCCCCcEEEEcCC
Q 011816 396 EHEPVNNLLDAVKVIKPTILIGSSGVGRTFT--KEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 396 ~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft--~evv~~Ma~~~erPIIFaLSN 447 (477)
. ..++.++ +. +|++|-+...+ ... ++.+. .....+..+|+-++.
T Consensus 162 ~---~~~~~~~-~~--~Divi~~tp~~-~~~~~~~~l~-~~~l~~g~~viD~~~ 207 (263)
T 2d5c_A 162 R---AVPLEKA-RE--ARLLVNATRVG-LEDPSASPLP-AELFPEEGAAVDLVY 207 (263)
T ss_dssp E---ECCGGGG-GG--CSEEEECSSTT-TTCTTCCSSC-GGGSCSSSEEEESCC
T ss_pred c---hhhHhhc-cC--CCEEEEccCCC-CCCCCCCCCC-HHHcCCCCEEEEeec
Confidence 1 3467777 54 99999776644 211 01221 122235668888774
No 80
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=93.07 E-value=0.87 Score=47.30 Aligned_cols=178 Identities=19% Similarity=0.262 Sum_probs=109.9
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCcccHHH---HHHHH---cCCC-c---eeccC----------CCchHHH
Q 011816 254 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKY---GTTH-L---VFNDD----------IQGTASV 313 (477)
Q Consensus 254 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---iL~ry---r~~~-~---~FnDD----------iQGTaaV 313 (477)
+-+|-..+...|++++.+.-||..-|-=+|++.. ..+ +.+.| ++.. + ++--+ -.-||-=
T Consensus 115 s~~e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~-~~~m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~G 193 (419)
T 1gtm_A 115 SDREKERLARGYIRAIYDVISPYEDIPAPDVYTN-PQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARG 193 (419)
T ss_dssp CHHHHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEeCCCCCCC-HHHHHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhH
Confidence 3456677889999999998888888888999873 222 23444 2221 2 33222 2236666
Q ss_pred HHHHHHHHHHHhCCC-CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEE-ccCCcccCCCCCCCchhch
Q 011816 314 VLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKK 391 (477)
Q Consensus 314 ~LAgll~Alr~~g~~-l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lv-D~~GLi~~~r~~~l~~~k~ 391 (477)
+.-++..+++..|.+ |+..++.|+|.|..|..+|+++... .|+ +++.+ |+.|-+.....-+++.-.
T Consensus 194 v~~~~~~~~~~~G~~~l~gktvgI~G~G~VG~~vA~~l~~~----~G~-------kVv~~sD~~g~~~~~~gvdl~~L~- 261 (419)
T 1gtm_A 194 ASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSED----FGM-------KVVAVSDSKGGIYNPDGLNADEVL- 261 (419)
T ss_dssp HHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHT----TCC-------EEEEEECSSCEEEEEEEECHHHHH-
T ss_pred HHHHHHHHHHHhCCcccCCCEEEEEcCCHHHHHHHHHHHHh----cCC-------EEEEEeCCCccccCccCCCHHHHH-
Confidence 666788888999999 9999999999999999999988641 254 45544 887754432110111111
Q ss_pred hhccc------cCCCCCH-HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 011816 392 PWAHE------HEPVNNL-LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 449 (477)
Q Consensus 392 ~~a~~------~~~~~~L-~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 449 (477)
.++.. -++...+ .+.+...|+|+||=++. ++.++++-++++ +.-+|..-+| |+
T Consensus 262 ~~~d~~~~l~~l~~t~~i~~~~l~~mk~dilIn~Ar-G~~Vde~a~~aL----~~~~I~~aAneP~ 322 (419)
T 1gtm_A 262 KWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAI-EEVITKKNADNI----KAKIVAEVANGPV 322 (419)
T ss_dssp HHHHHHSSSTTCTTSEEECHHHHHHSCCSEEEECSC-SCCBCTTGGGGC----CCSEEECCSSSCB
T ss_pred HHHHhcCEeecCccCeeeCHHHHHhCCCCEEEECCC-cccCCHHHHHHh----cCCEEEEeeCCCC
Confidence 11110 0000001 23455678999997775 668998887665 3345554444 54
No 81
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=93.02 E-value=0.07 Score=53.32 Aligned_cols=126 Identities=13% Similarity=0.235 Sum_probs=74.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
..||.|+|||+.|..++-+|+.. ++ ...++|+|.+-=-.++....|.+. .+|..+..-..+-.+++++
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~-----~~-----~~el~L~Di~~~~~~g~~~dl~~~-~~~~~~~~i~~~~~~a~~~- 76 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQ-----GI-----AQEIGIVDIFKDKTKGDAIDLSNA-LPFTSPKKIYSAEYSDAKD- 76 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSCHHHHHHHHHHHHTT-GGGSCCCEEEECCGGGGGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHcC-----CC-----CCEEEEEeCCchHhHHHHHHHHHH-HHhcCCeEEEECCHHHhCC-
Confidence 36999999999999998887543 44 268999997410000000002111 1222110000234677887
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcC
Q 011816 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIILQH 472 (477)
Q Consensus 411 kptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifAsG 472 (477)
+|++|=+.+.+.. +-+++++.|.++++..+|+-.|||. -...+-+++.+ .-.-+|++|
T Consensus 77 -aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv---~~~t~~~~k~s~~p~~rviG~g 150 (326)
T 2zqz_A 77 -ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV---DILTYATWKLSGFPKNRVVGSG 150 (326)
T ss_dssp -CSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH---HHHHHHHHHHHCCCGGGEEECT
T ss_pred -CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcH---HHHHHHHHHHcCCCHHHEEEcc
Confidence 9999866555421 2245777788889999999999998 34455555543 112456654
No 82
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=92.93 E-value=0.029 Score=58.73 Aligned_cols=127 Identities=13% Similarity=0.189 Sum_probs=78.7
Q ss_pred ceEEEeCcchH-HHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc--c-cCC---CCCHH
Q 011816 332 HRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--E-HEP---VNNLL 404 (477)
Q Consensus 332 ~riv~~GAGsA-g~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~--~-~~~---~~~L~ 404 (477)
.||.|+|||+. |.+++..|+.. ..+++ ...++|+|.+-- +++.+........+.. . ... ..++.
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~---~~~l~----~~ev~L~Di~~~--~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~ 78 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKR---YHELP----VGELWLVDIPEG--KEKLEIVGALAKRMVEKAGVPIEIHLTLDRR 78 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHT---TTTCC----EEEEEEECCGGG--HHHHHHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCCCC----CCEEEEEEcCCC--hHHHHHHHHHHHHHHhhcCCCcEEEEeCCHH
Confidence 69999999997 55555555431 12442 357999998520 0111101111122211 1 111 15788
Q ss_pred HHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 405 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+++++ +|++|=..+.++. .=+++++.|.++++..+|+-.|||.
T Consensus 79 eal~g--AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPv- 155 (450)
T 1s6y_A 79 RALDG--ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPA- 155 (450)
T ss_dssp HHHTT--CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH-
T ss_pred HHhCC--CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcH-
Confidence 99998 9999876665421 1358889999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEEcC
Q 011816 451 QSECTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 451 ~~E~tpe~A~~~t~G~aifAsG 472 (477)
-+..+-+++.+.-.-+|++|
T Consensus 156 --divT~a~~k~~p~~rViG~c 175 (450)
T 1s6y_A 156 --GMVTEAVLRYTKQEKVVGLC 175 (450)
T ss_dssp --HHHHHHHHHHCCCCCEEECC
T ss_pred --HHHHHHHHHhCCCCCEEEeC
Confidence 34555566666333677765
No 83
>3tum_A Shikimate dehydrogenase family protein; rossmann-fold NAD(P)(+)-binding site, shikimate dehydrogenas substrate binding domain, oxidoreductase; HET: NAD; 2.15A {Pseudomonas putida}
Probab=92.85 E-value=0.18 Score=49.39 Aligned_cols=115 Identities=21% Similarity=0.306 Sum_probs=68.5
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
.|++.+++-.|.+++..|++++|||-|+-+|+-.|.+ .|. ++|+++++. ..|.+.|. +.+..
T Consensus 110 ~Gf~~~L~~~g~~~~~~~~lilGaGGaarai~~aL~~-----~g~------~~i~i~nRt----~~ra~~la---~~~~~ 171 (269)
T 3tum_A 110 AGFLGAAHKHGFEPAGKRALVIGCGGVGSAIAYALAE-----AGI------ASITLCDPS----TARMGAVC---ELLGN 171 (269)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSC----HHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhCCCcccCeEEEEecHHHHHHHHHHHHH-----hCC------CeEEEeCCC----HHHHHHHH---HHHhc
Confidence 4678889989999999999999999999999877765 354 689999872 33322121 11211
Q ss_pred ccCC--CCCHHHHhcccCCcEEEeccCCC-----C-CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCH
Q 011816 396 EHEP--VNNLLDAVKVIKPTILIGSSGVG-----R-TFTKEVIEAMASFNEKPLILALSNPTSQSECTA 456 (477)
Q Consensus 396 ~~~~--~~~L~eav~~vkptvLIG~S~~~-----g-~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tp 456 (477)
..+. .....+.++. .|++|=++..+ . -+.++.+..+ .+..++|=+. -+|+-||
T Consensus 172 ~~~~~~~~~~~~~~~~--~dliiNaTp~Gm~~~~~~p~~~~~~~~l---~~~~~v~D~v---Y~P~~T~ 232 (269)
T 3tum_A 172 GFPGLTVSTQFSGLED--FDLVANASPVGMGTRAELPLSAALLATL---QPDTLVADVV---TSPEITP 232 (269)
T ss_dssp HCTTCEEESCCSCSTT--CSEEEECSSTTCSTTCCCSSCHHHHHTC---CTTSEEEECC---CSSSSCH
T ss_pred cCCcceehhhhhhhhc--ccccccCCccccCCCCCCCCChHHHhcc---CCCcEEEEEc---cCCCCCH
Confidence 1111 0111122332 78998776644 1 1445554433 4667777653 1244565
No 84
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=92.82 E-value=0.086 Score=52.41 Aligned_cols=125 Identities=12% Similarity=0.216 Sum_probs=73.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
.||.|+|||..|..+|-+|+.. ++ ...|+|+|.+-=-.++-...|.+. .+|..+..-..+-.+++++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~-----~~-----~~el~L~Di~~~~~~g~~~dl~~~-~~~~~~~~v~~~~~~a~~~-- 72 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ-----GI-----AEEFVIVDVVKDRTKGDALDLEDA-QAFTAPKKIYSGEYSDCKD-- 72 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHHHHGG-GGGSCCCEEEECCGGGGTT--
T ss_pred CEEEEECCCHHHHHHHHHHHcC-----CC-----CCEEEEEeCCchHHHHHHHHHHHH-HHhcCCeEEEECCHHHhCC--
Confidence 6999999999999988887553 44 268999997310000000002111 1232211001234677887
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEcC
Q 011816 412 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIILQH 472 (477)
Q Consensus 412 ptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifAsG 472 (477)
+|++|=+.+.+.. +-+++++.|.++++..+|+-.|||. -...+-+++.+ .-.-+|++|
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv---~~~t~~~~k~s~~p~~rviG~g 146 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV---DILTYATWKFSGFPKERVIGSG 146 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH---HHHHHHHHHHHCCCGGGEEECT
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcH---HHHHHHHHHHcCCCHHHEEecc
Confidence 9999865554421 2345777788899999999999998 34455555543 112456665
No 85
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=92.78 E-value=1.3 Score=44.10 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCCceeccCCCc---hHHHHHHHHHHHHHHh-------------------------CCCCccceEEEeCcchHHHHHHHH
Q 011816 298 TTHLVFNDDIQG---TASVVLAGVVAALKLI-------------------------GGTLAEHRFLFLGAGEAGTGIAEL 349 (477)
Q Consensus 298 ~~~~~FnDDiQG---TaaV~LAgll~Alr~~-------------------------g~~l~d~riv~~GAGsAg~Gia~l 349 (477)
..|+|.|----. +|=-+++.+|+..|-. |..|...+|.|+|+|..|..+|+.
T Consensus 89 ~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~ 168 (334)
T 2dbq_A 89 RGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168 (334)
T ss_dssp TTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHH
Confidence 356666643323 3334678888776621 457889999999999999999998
Q ss_pred HHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCC
Q 011816 350 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTF 425 (477)
Q Consensus 350 l~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~F 425 (477)
+.. .|. +++.+|+..- . ... ..+ .-...++.++++. +|+++=.-. ..+.+
T Consensus 169 l~~-----~G~-------~V~~~d~~~~----~----~~~-~~~---g~~~~~l~~~l~~--aDvVil~vp~~~~t~~~i 222 (334)
T 2dbq_A 169 AKG-----FNM-------RILYYSRTRK----E----EVE-REL---NAEFKPLEDLLRE--SDFVVLAVPLTRETYHLI 222 (334)
T ss_dssp HHH-----TTC-------EEEEECSSCC----H----HHH-HHH---CCEECCHHHHHHH--CSEEEECCCCCTTTTTCB
T ss_pred HHh-----CCC-------EEEEECCCcc----h----hhH-hhc---CcccCCHHHHHhh--CCEEEECCCCChHHHHhh
Confidence 864 253 6888887421 0 000 001 0011356666665 666653221 12455
Q ss_pred CHHHHHHHHcCCCCcEEEEcC
Q 011816 426 TKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 426 t~evv~~Ma~~~erPIIFaLS 446 (477)
+++.++.|. +..+|.-.|
T Consensus 223 ~~~~~~~mk---~~ailIn~s 240 (334)
T 2dbq_A 223 NEERLKLMK---KTAILINIA 240 (334)
T ss_dssp CHHHHHHSC---TTCEEEECS
T ss_pred CHHHHhcCC---CCcEEEECC
Confidence 566666664 345555454
No 86
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=92.75 E-value=0.091 Score=55.64 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=76.8
Q ss_pred cceEEEeCcchHH--HHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc---ccCC---CCC
Q 011816 331 EHRFLFLGAGEAG--TGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEP---VNN 402 (477)
Q Consensus 331 d~riv~~GAGsAg--~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~---~~~~---~~~ 402 (477)
..||.|+|||+.| .++|..|+.. .++ +...++|+|.+- ++.+........+.. .... ..+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~----~~l----~~~eV~L~Di~~----e~l~~~~~~~~~~l~~~~~~~~I~~ttD 70 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKT----PGL----SGSTVTLMDIDE----ERLDAILTIAKKYVEEVGADLKFEKTMN 70 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTC----GGG----TTCEEEEECSCH----HHHHHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc----CcC----CCCEEEEEeCCH----HHHHHHHHHHHHHhccCCCCcEEEEECC
Confidence 4689999999965 5456666531 122 236899999853 111101111112211 1111 257
Q ss_pred HHHHhcccCCcEEEeccCCC---------------CCCC-------------------------HHHHHHHHcCCCCcEE
Q 011816 403 LLDAVKVIKPTILIGSSGVG---------------RTFT-------------------------KEVIEAMASFNEKPLI 442 (477)
Q Consensus 403 L~eav~~vkptvLIG~S~~~---------------g~Ft-------------------------~evv~~Ma~~~erPII 442 (477)
+.+++++ +|++|=..+.+ |.|. +++++.|.++++..+|
T Consensus 71 ~~eal~d--AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~i 148 (480)
T 1obb_A 71 LDDVIID--ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWY 148 (480)
T ss_dssp HHHHHTT--CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHhCC--CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEE
Confidence 8899987 99988655321 2322 6899999999999999
Q ss_pred EEcCCCCCCCCCCHHHHhcccCCcEEEEcCC
Q 011816 443 LALSNPTSQSECTAEEAYTWSKVQTIILQHF 473 (477)
Q Consensus 443 FaLSNPt~~~E~tpe~A~~~t~G~aifAsGs 473 (477)
+-.|||. -+..+-+.++. ..-+|++|.
T Consensus 149 i~~TNPv---di~t~~~~k~p-~~rviG~c~ 175 (480)
T 1obb_A 149 LQAANPI---FEGTTLVTRTV-PIKAVGFCH 175 (480)
T ss_dssp EECSSCH---HHHHHHHHHHS-CSEEEEECS
T ss_pred EEeCCcH---HHHHHHHHHCC-CCcEEecCC
Confidence 9999998 34445555554 446777663
No 87
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=92.74 E-value=0.089 Score=52.33 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=73.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC----CCchhchhhccccCC---CCCHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEP---VNNLL 404 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~~a~~~~~---~~~L~ 404 (477)
.||.|+|||+.|.++|.+++.. |+ + +++++|.+ .++-+ .+.+.. .+...... ..++
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~-----g~----~--~v~L~Di~----~~~l~~~~~~l~~~~-~~~~~~~~i~~t~d~- 67 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK-----NL----G--DVVLFDIV----KNMPHGKALDTSHTN-VMAYSNCKVSGSNTY- 67 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC----C--EEEEECSS----SSHHHHHHHHHHTHH-HHHTCCCCEEEECCG-
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC----C--eEEEEeCC----HHHHHHHHHHHHhhh-hhcCCCcEEEECCCH-
Confidence 4899999999999999988753 54 1 39999975 22110 011110 11110111 1467
Q ss_pred HHhcccCCcEEEeccCCC---CC----------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--
Q 011816 405 DAVKVIKPTILIGSSGVG---RT----------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS-- 463 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~---g~----------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t-- 463 (477)
++++. +|++|=+.+.+ |. +-+++.+.|.++++.-+|+-.|||..- ..+-+.+.+
T Consensus 68 ~al~~--aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~---~t~~~~~~~g~ 142 (322)
T 1t2d_A 68 DDLAG--ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV---MVQLLHQHSGV 142 (322)
T ss_dssp GGGTT--CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHH---HHHHHHHHHCC
T ss_pred HHhCC--CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHH---HHHHHHHhcCC
Confidence 78887 99998664333 21 357788888888999888778999843 234444443
Q ss_pred CCcEEEEcC
Q 011816 464 KVQTIILQH 472 (477)
Q Consensus 464 ~G~aifAsG 472 (477)
...-+|++|
T Consensus 143 ~~~rviG~g 151 (322)
T 1t2d_A 143 PKNKIIGLG 151 (322)
T ss_dssp CGGGEEECC
T ss_pred ChHHEEecc
Confidence 344567765
No 88
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=92.68 E-value=0.56 Score=43.66 Aligned_cols=92 Identities=12% Similarity=0.247 Sum_probs=53.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
..||.|+|+|..|.++|..|... |.. ...+++++|+. ..+ ..+ .-..++.++++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~-----g~~---~~~~v~~~~~~----~~~-~g~-----------~~~~~~~~~~~~- 58 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA-----NII---KKENLFYYGPS----KKN-TTL-----------NYMSSNEELARH- 58 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH-----TSS---CGGGEEEECSS----CCS-SSS-----------EECSCHHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CCC---CCCeEEEEeCC----ccc-Cce-----------EEeCCHHHHHhc-
Confidence 45899999999999999998764 420 01368888874 111 000 011345666654
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+|++| ++..+ ...+++++.+..+.+..+|+.++|..+
T Consensus 59 -~D~vi-~~v~~-~~~~~v~~~l~~~l~~~~vv~~~~gi~ 95 (262)
T 2rcy_A 59 -CDIIV-CAVKP-DIAGSVLNNIKPYLSSKLLISICGGLN 95 (262)
T ss_dssp -CSEEE-ECSCT-TTHHHHHHHSGGGCTTCEEEECCSSCC
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 66655 33323 345666666654444556666666653
No 89
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=92.61 E-value=0.053 Score=45.09 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=53.5
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHH-
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA- 406 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~ea- 406 (477)
++..+|+|+|+|..|..+++.+.. .|. +++++|++-- +.+.+......+.. +..+...|.++
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~-----~g~-------~v~~~d~~~~----~~~~~~~~~~~~~~~d~~~~~~l~~~~ 67 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHR-----MGH-------EVLAVDINEE----KVNAYASYATHAVIANATEENELLSLG 67 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHH-----TTC-------CCEEEESCHH----HHHTTTTTCSEEEECCTTCHHHHHTTT
T ss_pred CcCCcEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHH----HHHHHHHhCCEEEEeCCCCHHHHHhcC
Confidence 456789999999999999988864 252 5778887421 10111111001111 11111123333
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
++ ++|++|=+.+..-..+..+++...+.+...||...+||.
T Consensus 68 ~~--~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 108 (144)
T 2hmt_A 68 IR--NFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYY 108 (144)
T ss_dssp GG--GCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHH
T ss_pred CC--CCCEEEECCCCchHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 33 489999665532012223444444455566777777775
No 90
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=92.34 E-value=0.14 Score=50.86 Aligned_cols=120 Identities=22% Similarity=0.354 Sum_probs=71.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC----CCchhchhhccccC-CCCCHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHE-PVNNLLDA 406 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~~a~~~~-~~~~L~ea 406 (477)
.||.|+|||..|..+|-+|+. .|+ ...++++|.+ .++.+ .|.+.. +|.++.. ...+ .++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~-----~~~-----~~ev~L~Di~----~~~~~g~~~dl~~~~-~~~~~~~i~~~~-~~a 71 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMAL-----RQT-----ANELVLIDVF----KEKAIGEAMDINHGL-PFMGQMSLYAGD-YSD 71 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTC-----SSEEEEECCC-------CCHHHHHHTTSC-CCTTCEEEC--C-GGG
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCC----hHHHHHHHHHHHHhH-HhcCCeEEEECC-HHH
Confidence 589999999999998888754 244 2589999975 22211 011111 1211100 0123 567
Q ss_pred hcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEE
Q 011816 407 VKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIIL 470 (477)
Q Consensus 407 v~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifA 470 (477)
+++ +|++|=+.+.+ |- +-+++++.|.++++..+|+-.|||. -.+.+-+++.+ ...-+|+
T Consensus 72 ~~~--aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv---~~~~~~~~k~s~~p~~rviG 146 (318)
T 1y6j_A 72 VKD--CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV---DIITYMIQKWSGLPVGKVIG 146 (318)
T ss_dssp GTT--CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSH---HHHHHHHHHHHTCCTTTEEE
T ss_pred hCC--CCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcH---HHHHHHHHHHcCCCHHHEec
Confidence 777 99998655544 21 1268889999999999999999997 44445555543 1224566
Q ss_pred cC
Q 011816 471 QH 472 (477)
Q Consensus 471 sG 472 (477)
+|
T Consensus 147 ~g 148 (318)
T 1y6j_A 147 SG 148 (318)
T ss_dssp CT
T ss_pred cC
Confidence 64
No 91
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=92.29 E-value=0.14 Score=49.06 Aligned_cols=103 Identities=23% Similarity=0.308 Sum_probs=62.3
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccC--CCC-----CCCchhchhhc-----c
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS--SRK-----DSLQHFKKPWA-----H 395 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~--~r~-----~~l~~~k~~~a-----~ 395 (477)
+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=+=.+ +|. +++-..|..-+ +
T Consensus 25 ~l~~~~VlvvG~GglG~~va~~La~~-----Gv------g~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~ 93 (251)
T 1zud_1 25 KLLDSQVLIIGLGGLGTPAALYLAGA-----GV------GTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQ 93 (251)
T ss_dssp HHHTCEEEEECCSTTHHHHHHHHHHT-----TC------SEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred HHhcCcEEEEccCHHHHHHHHHHHHc-----CC------CeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHH
Confidence 56788999999999999999998764 75 68999998732111 110 00111111111 0
Q ss_pred ccC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 396 EHE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 396 ~~~---------~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
-.+ .. .++.+.++. .|++|.++.. .-++..+...+.....|+|.+-
T Consensus 94 ~np~~~v~~~~~~~~~~~~~~~~~~--~DvVi~~~d~--~~~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 94 LNPDIQLTALQQRLTGEALKDAVAR--ADVVLDCTDN--MATRQEINAACVALNTPLITAS 150 (251)
T ss_dssp HCTTSEEEEECSCCCHHHHHHHHHH--CSEEEECCSS--HHHHHHHHHHHHHTTCCEEEEE
T ss_pred HCCCCEEEEEeccCCHHHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHhCCCEEEEe
Confidence 000 11 135566665 8999976642 2355666666666678988754
No 92
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=92.25 E-value=0.11 Score=51.33 Aligned_cols=98 Identities=16% Similarity=0.354 Sum_probs=61.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch------hhcccc-CCCCCHHH
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK------PWAHEH-EPVNNLLD 405 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~------~~a~~~-~~~~~L~e 405 (477)
||.|+|||+.|.++|..++.. |. ...++++|.+- ++ +..... ++.... -...+ .+
T Consensus 2 kI~VIGaG~~G~~la~~l~~~-----g~-----~~~V~l~D~~~----~~---~~~~~~~l~~~~~~~~~~~i~~~d-~~ 63 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMK-----GF-----AREMVLIDVDK----KR---AEGDALDLIHGTPFTRRANIYAGD-YA 63 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSH----HH---HHHHHHHHHHHGGGSCCCEEEECC-GG
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEeCCh----HH---HHHHHHHHHhhhhhcCCcEEEeCC-HH
Confidence 799999999999999988653 53 24799999751 11 111111 111000 00124 35
Q ss_pred HhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 406 AVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+++. +|++|=+...+.. .-+++++.|.++++.-+|+-.|||..
T Consensus 64 ~~~~--aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~ 120 (319)
T 1a5z_A 64 DLKG--SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120 (319)
T ss_dssp GGTT--CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH
T ss_pred HhCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHH
Confidence 6665 8988855444321 12788889988888888888999984
No 93
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=92.07 E-value=0.14 Score=51.56 Aligned_cols=126 Identities=13% Similarity=0.223 Sum_probs=77.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
..||.|+|||..|.++|..|+.. |+ ...+.++|..-=..++-.-+|.+. .+|.....-..+..+++++
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~-----~~-----~~el~l~D~~~~k~~g~a~DL~~~-~~~~~~~~i~~~~~~a~~~- 76 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQ-----GI-----AQEIGIVDIFKDKTKGDAIDLEDA-LPFTSPKKIYSAEYSDAKD- 76 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSCHHHHHHHHHHHHTT-GGGSCCCEEEECCGGGGTT-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEeCChHHHHHHHhhHhhh-hhhcCCcEEEECcHHHhcC-
Confidence 46899999999999999888764 54 258999998311000000012221 1232110001234567776
Q ss_pred CCcEEEeccCCC---C-----CC------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcC
Q 011816 411 KPTILIGSSGVG---R-----TF------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 411 kptvLIG~S~~~---g-----~F------t~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsG 472 (477)
+|++|=+.+.+ | +| -+++++.|+++++..+|+-.|||. .+..+-+++.+. -+-+|++|
T Consensus 77 -aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPv---di~t~~~~k~~g~p~~rviG~g 150 (326)
T 3vku_A 77 -ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV---DILTYATWKLSGFPKNRVVGSG 150 (326)
T ss_dssp -CSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSH---HHHHHHHHHHHCCCGGGEEECT
T ss_pred -CCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCch---HHHHHHHHHhcCCCHHHeeeec
Confidence 89887554433 2 23 358888999999999999999998 455666666542 23466765
No 94
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=92.06 E-value=0.13 Score=43.90 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+|+|||.||+..|..|.+ .|+ ++.++|+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~-----~G~-------~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTA-----AGH-------QVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEECC
Confidence 59999999999999999876 376 57888864
No 95
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=91.99 E-value=0.58 Score=46.47 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-
Q 011816 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE- 396 (477)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~- 396 (477)
.+++-.+..+ ...++.|+|+|..|-.+++.+... .+ -++|+++|+. +. ....+.+...
T Consensus 110 ~laa~~La~~--~~~~v~iIGaG~~a~~~~~al~~~----~~------~~~V~v~~r~------~a---~~la~~l~~~~ 168 (313)
T 3hdj_A 110 VLAAGALARP--RSSVLGLFGAGTQGAEHAAQLSAR----FA------LEAILVHDPY------AS---PEILERIGRRC 168 (313)
T ss_dssp HHHHHHHSCT--TCCEEEEECCSHHHHHHHHHHHHH----SC------CCEEEEECTT------CC---HHHHHHHHHHH
T ss_pred HHHHHhhccC--CCcEEEEECccHHHHHHHHHHHHh----CC------CcEEEEECCc------HH---HHHHHHHHHhc
Confidence 3444444433 457999999999999988877653 23 3689999986 21 2222222211
Q ss_pred ---cCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCC--CCCCCCCCHHHH
Q 011816 397 ---HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSN--PTSQSECTAEEA 459 (477)
Q Consensus 397 ---~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSN--Pt~~~E~tpe~A 459 (477)
.... ++.|+++. +|++|-++... .+|..+++ .+..+|..++. |. +-|+.++-.
T Consensus 169 g~~~~~~-~~~eav~~--aDIVi~aT~s~~pvl~~~~l------~~G~~V~~vGs~~p~-~~El~~~~~ 227 (313)
T 3hdj_A 169 GVPARMA-APADIAAQ--ADIVVTATRSTTPLFAGQAL------RAGAFVGAIGSSLPH-TRELDDEAL 227 (313)
T ss_dssp TSCEEEC-CHHHHHHH--CSEEEECCCCSSCSSCGGGC------CTTCEEEECCCSSTT-CCCCCHHHH
T ss_pred CCeEEEe-CHHHHHhh--CCEEEEccCCCCcccCHHHc------CCCcEEEECCCCCCc-hhhcCHHHH
Confidence 1223 89999998 99999765432 25555443 36789998876 44 579998854
No 96
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=91.87 E-value=0.15 Score=51.49 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=63.4
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc----cCCCCCH
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNL 403 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L 403 (477)
.+...+++|+|+|..|..+|+.+.. .|. +++.+|+.. .+ +...++.+... .....++
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~-----~Ga-------~V~~~d~~~----~~---l~~~~~~~g~~~~~~~~~~~~l 225 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANG-----MGA-------TVTVLDINI----DK---LRQLDAEFCGRIHTRYSSAYEL 225 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESCH----HH---HHHHHHHTTTSSEEEECCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEeCCH----HH---HHHHHHhcCCeeEeccCCHHHH
Confidence 4778999999999999999998764 253 688888741 11 11111112110 0012357
Q ss_pred HHHhcccCCcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 404 LDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~-----g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
.+.++. .|++|.+.+.+ .+++++.++.|. +.-+|.-+|-
T Consensus 226 ~~~l~~--aDvVi~~~~~p~~~t~~li~~~~l~~mk---~g~~iV~va~ 269 (377)
T 2vhw_A 226 EGAVKR--ADLVIGAVLVPGAKAPKLVSNSLVAHMK---PGAVLVDIAI 269 (377)
T ss_dssp HHHHHH--CSEEEECCCCTTSCCCCCBCHHHHTTSC---TTCEEEEGGG
T ss_pred HHHHcC--CCEEEECCCcCCCCCcceecHHHHhcCC---CCcEEEEEec
Confidence 788876 99999876544 457999999996 4567777773
No 97
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=91.83 E-value=0.29 Score=46.91 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.|++.+|+-.|.+++..+++|+|||.+|.++|..+... | .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~-----G-------~~V~v~~R~ 151 (271)
T 1nyt_A 103 GVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSL-----D-------CAVTITNRT 151 (271)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSS
T ss_pred HHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHc-----C-------CEEEEEECC
Confidence 567888888888899999999999998888888887652 4 378888874
No 98
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=91.71 E-value=1.2 Score=45.08 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=80.4
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHHh---------------------CCCCccceEEEeCcchHHHHHHHHHHHH
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~~---------------------g~~l~d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
..|+|.|--- +.+|=-+++-+|+..|-. |..|.+.++.|+|.|..|-.+|+.+..
T Consensus 116 ~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~- 194 (345)
T 4g2n_A 116 LGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARG- 194 (345)
T ss_dssp TTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHT-
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHH-
Confidence 4566666532 234556788888877632 567889999999999999999999864
Q ss_pred HHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHH
Q 011816 354 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEV 429 (477)
Q Consensus 354 ~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~ev 429 (477)
.|+ +++.+|+... +... +.......+|.|+++. .|+++=.-- ..+.|+++.
T Consensus 195 ----~G~-------~V~~~dr~~~---------~~~~---~~g~~~~~~l~ell~~--sDvV~l~~Plt~~T~~li~~~~ 249 (345)
T 4g2n_A 195 ----FGL-------AIHYHNRTRL---------SHAL---EEGAIYHDTLDSLLGA--SDIFLIAAPGRPELKGFLDHDR 249 (345)
T ss_dssp ----TTC-------EEEEECSSCC---------CHHH---HTTCEECSSHHHHHHT--CSEEEECSCCCGGGTTCBCHHH
T ss_pred ----CCC-------EEEEECCCCc---------chhh---hcCCeEeCCHHHHHhh--CCEEEEecCCCHHHHHHhCHHH
Confidence 264 6888887521 1100 0011112478888876 888774321 126788888
Q ss_pred HHHHHcCCCCcEEEEcCCC
Q 011816 430 IEAMASFNEKPLILALSNP 448 (477)
Q Consensus 430 v~~Ma~~~erPIIFaLSNP 448 (477)
++.|. +..|+.=.|.-
T Consensus 250 l~~mk---~gailIN~aRG 265 (345)
T 4g2n_A 250 IAKIP---EGAVVINISRG 265 (345)
T ss_dssp HHHSC---TTEEEEECSCG
T ss_pred HhhCC---CCcEEEECCCC
Confidence 88885 56777776653
No 99
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=91.69 E-value=0.27 Score=48.86 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=65.5
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchh-hccccCCCCCHHHHhcc
Q 011816 332 HRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-WAHEHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~-~a~~~~~~~~L~eav~~ 409 (477)
.||+|.| +|..|..++..|+. .|+ ...++++|.+-- ......|.+...+ -.+......++.+++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~-----~g~-----~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~g 76 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKM-----NPL-----VSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTG 76 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHH-----CTT-----EEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCC
Confidence 5899999 79999999888753 353 246999996421 0000001110000 00000011257889987
Q ss_pred cCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 410 IKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 410 vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+|++|=+.+.+. ..++++++.|.+++.+.+|+--|||.
T Consensus 77 --aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv 128 (326)
T 1smk_A 77 --MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPV 128 (326)
T ss_dssp --CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred --CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCch
Confidence 999986655442 24678888898888899999999998
No 100
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Probab=91.64 E-value=0.14 Score=53.19 Aligned_cols=124 Identities=13% Similarity=0.176 Sum_probs=77.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHh-hCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc---CCCCCHHHHh
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 407 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~-~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~eav 407 (477)
.||.|+|||+. .+..++..+.. ..++. ...|+|+|.+- +|.+........+++.. ....++.+++
T Consensus 3 ~KI~IIGaG~v---~~~~l~~~l~~~~~~l~----~~el~L~Di~~----~~~~~~~~~~~~~~~~~~~v~~t~d~~~al 71 (417)
T 1up7_A 3 MRIAVIGGGSS---YTPELVKGLLDISEDVR----IDEVIFYDIDE----EKQKIVVDFVKRLVKDRFKVLISDTFEGAV 71 (417)
T ss_dssp CEEEEETTTCT---THHHHHHHHHHHTTTSC----CCEEEEECSCH----HHHHHHHHHHHHHHTTSSEEEECSSHHHHH
T ss_pred CEEEEECCCHH---HHHHHHHHHHhcccCCC----cCEEEEEeCCH----HHHHHHHHHHHHHhhCCeEEEEeCCHHHHh
Confidence 58999999995 55555444433 23442 36899999742 22110001111111110 1125788999
Q ss_pred cccCCcEEEeccCCCC---------------CC-------------------CHHHHHHHHcCCCCcEEEEcCCCCCCCC
Q 011816 408 KVIKPTILIGSSGVGR---------------TF-------------------TKEVIEAMASFNEKPLILALSNPTSQSE 453 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g---------------~F-------------------t~evv~~Ma~~~erPIIFaLSNPt~~~E 453 (477)
++ +|++|=..++++ ++ =.++++.|.+++ ..+|+-.|||. -
T Consensus 72 ~~--AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPv---d 145 (417)
T 1up7_A 72 VD--AKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPS---G 145 (417)
T ss_dssp TT--CSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSH---H
T ss_pred CC--CCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChH---H
Confidence 98 999998777653 22 358899999999 99999999998 3
Q ss_pred CCHHHHhcccCCcEEEEcC
Q 011816 454 CTAEEAYTWSKVQTIILQH 472 (477)
Q Consensus 454 ~tpe~A~~~t~G~aifAsG 472 (477)
+..+-+++.+.-.-+|.+|
T Consensus 146 i~t~a~~k~~p~~rviG~c 164 (417)
T 1up7_A 146 HITEFVRNYLEYEKFIGLC 164 (417)
T ss_dssp HHHHHHHHTTCCSSEEECC
T ss_pred HHHHHHHHhCCCCCEEEeC
Confidence 4555566766433577765
No 101
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=91.54 E-value=0.22 Score=47.90 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a 394 (477)
-.|++.+|+-.|..++..+++|+|||.+|.++|..|... | .+++++|+. .++ .....+.+.
T Consensus 103 ~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~-----G-------~~v~v~~R~----~~~---a~~l~~~~~ 163 (272)
T 1p77_A 103 GIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQA-----Q-------QNIVLANRT----FSK---TKELAERFQ 163 (272)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHT-----T-------CEEEEEESS----HHH---HHHHHHHHG
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HHHHHHHcc
Confidence 568888888888889999999999999999988887652 4 478888874 121 112222221
Q ss_pred cccC-CCCCHHHHhcccCCcEEEeccCCCCC-----CCHHHHHHHHcCCCCcEEEEcC
Q 011816 395 HEHE-PVNNLLDAVKVIKPTILIGSSGVGRT-----FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 395 ~~~~-~~~~L~eav~~vkptvLIG~S~~~g~-----Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.... ...++.++.+ -++|++|-+++.+.. +..++++ +.-+++=++
T Consensus 164 ~~~~~~~~~~~~~~~-~~~DivIn~t~~~~~~~~~~i~~~~l~------~~~~v~D~~ 214 (272)
T 1p77_A 164 PYGNIQAVSMDSIPL-QTYDLVINATSAGLSGGTASVDAEILK------LGSAFYDMQ 214 (272)
T ss_dssp GGSCEEEEEGGGCCC-SCCSEEEECCCC-------CCCHHHHH------HCSCEEESC
T ss_pred ccCCeEEeeHHHhcc-CCCCEEEECCCCCCCCCCCCCCHHHcC------CCCEEEEee
Confidence 1000 0112322212 258999988876532 4444442 244666665
No 102
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=91.48 E-value=0.49 Score=43.54 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=26.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+...||.|+|+|..|.++|..+... | .+++++|+.
T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~-----g-------~~V~~~~~~ 51 (209)
T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIA-----G-------HEVTYYGSK 51 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECTT
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 346677999999999999999988653 4 368888864
No 103
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=91.47 E-value=0.39 Score=47.10 Aligned_cols=100 Identities=21% Similarity=0.308 Sum_probs=60.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCC----chhchhhccc--cCCCCCHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL----QHFKKPWAHE--HEPVNNLLDA 406 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l----~~~k~~~a~~--~~~~~~L~ea 406 (477)
||.|+|||..|.++|..+... ++ -.+++++|.+- ++.+.+ .+....+... .....++.+
T Consensus 2 kI~VIGaG~vG~~la~~la~~-----~~-----g~~V~l~D~~~----~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~- 66 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEK-----QL-----ARELVLLDVVE----GIPQGKALDMYESGPVGLFDTKVTGSNDYAD- 66 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSSS----SHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCh----hHHHHHHHhHHhhhhcccCCcEEEECCCHHH-
Confidence 799999999999999987642 21 25799999852 111101 1100001000 001145655
Q ss_pred hcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 407 VKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 407 v~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
++. +|++|=+.+.+ |- +-+++++.|+++++..+|+-.|||.
T Consensus 67 l~~--aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~ 121 (310)
T 1guz_A 67 TAN--SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121 (310)
T ss_dssp GTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSH
T ss_pred HCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Confidence 766 89888554432 21 1157778888888888988899997
No 104
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=91.46 E-value=0.24 Score=45.83 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=56.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEE-EccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL-VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~l-vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
.||.|+|+|..|.++|..+... |. ++.+ +|++ .+.+....+.+-- ....+..++++.
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~-----g~-------~V~~v~~r~-------~~~~~~l~~~~g~--~~~~~~~~~~~~- 81 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAA-----QI-------PAIIANSRG-------PASLSSVTDRFGA--SVKAVELKDALQ- 81 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHT-----TC-------CEEEECTTC-------GGGGHHHHHHHTT--TEEECCHHHHTT-
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECCC-------HHHHHHHHHHhCC--CcccChHHHHhc-
Confidence 5899999999999999988753 53 4554 5542 1112222222210 111245566665
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+|++| ++..+ ...+++++.++. .+..+|+.++||..
T Consensus 82 -aDvVi-lavp~-~~~~~v~~~l~~-~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 82 -ADVVI-LAVPY-DSIADIVTQVSD-WGGQIVVDASNAID 117 (220)
T ss_dssp -SSEEE-EESCG-GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred -CCEEE-EeCCh-HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence 88877 33333 456677777655 34568899999873
No 105
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=91.45 E-value=0.98 Score=45.24 Aligned_cols=107 Identities=16% Similarity=0.273 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHH-------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEE
Q 011816 310 TASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 370 (477)
Q Consensus 310 TaaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~ 370 (477)
+|=-+++-+|+..|- .|..|.+.+|.|+|.|..|.++|+.+.. .|+ +++
T Consensus 124 vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~-----~G~-------~V~ 191 (333)
T 3ba1_A 124 VADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEA-----FDC-------PIS 191 (333)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHHHHHHHT-----TTC-------CEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEE
Confidence 344467777776553 2457889999999999999999998864 354 688
Q ss_pred EEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 371 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 371 lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.+|+..- . ... + . ...+|.|+++. +|+++=.-- ..++++++.++.|. +..+|.-.|
T Consensus 192 ~~dr~~~----~---~~g----~-~---~~~~l~ell~~--aDvVil~vP~~~~t~~li~~~~l~~mk---~gailIn~s 251 (333)
T 3ba1_A 192 YFSRSKK----P---NTN----Y-T---YYGSVVELASN--SDILVVACPLTPETTHIINREVIDALG---PKGVLINIG 251 (333)
T ss_dssp EECSSCC----T---TCC----S-E---EESCHHHHHHT--CSEEEECSCCCGGGTTCBCHHHHHHHC---TTCEEEECS
T ss_pred EECCCch----h---ccC----c-e---ecCCHHHHHhc--CCEEEEecCCChHHHHHhhHHHHhcCC---CCCEEEECC
Confidence 8887421 1 110 0 0 12357777765 777664321 12567777777774 455666555
Q ss_pred CC
Q 011816 447 NP 448 (477)
Q Consensus 447 NP 448 (477)
.-
T Consensus 252 rG 253 (333)
T 3ba1_A 252 RG 253 (333)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 106
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=91.41 E-value=1 Score=44.35 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEE
Q 011816 310 TASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (477)
Q Consensus 310 TaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~l 371 (477)
+|=-+++.+|+..|- .+..|.+.++.|+|.|..|..+|+.+.. .|+ +++.
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~-----~G~-------~V~~ 170 (307)
T 1wwk_A 103 VAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANA-----LGM-------NILL 170 (307)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 344467777777662 3467899999999999999999998864 264 6888
Q ss_pred EccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 372 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 372 vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+|+.. +. ...+ .+ .-...+|.|+++. .|+++=.-- ..++++++.++.|. +..++.=.|.
T Consensus 171 ~d~~~-------~~-~~~~-~~---g~~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~l~~mk---~ga~lin~ar 233 (307)
T 1wwk_A 171 YDPYP-------NE-ERAK-EV---NGKFVDLETLLKE--SDVVTIHVPLVESTYHLINEERLKLMK---KTAILINTSR 233 (307)
T ss_dssp ECSSC-------CH-HHHH-HT---TCEECCHHHHHHH--CSEEEECCCCSTTTTTCBCHHHHHHSC---TTCEEEECSC
T ss_pred ECCCC-------Ch-hhHh-hc---CccccCHHHHHhh--CCEEEEecCCChHHhhhcCHHHHhcCC---CCeEEEECCC
Confidence 88741 10 0000 00 0011367777775 787774321 23567777777775 4567766665
No 107
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=91.37 E-value=1.8 Score=43.03 Aligned_cols=119 Identities=11% Similarity=0.133 Sum_probs=77.7
Q ss_pred CCCceeccCCCch---HHHHHHHHHHHHHH-------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHH
Q 011816 298 TTHLVFNDDIQGT---ASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (477)
Q Consensus 298 ~~~~~FnDDiQGT---aaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~ 355 (477)
..|+|.|---..+ |=-+++.+|+..|- .|..|.+.++.|+|.|..|..+|+.+..
T Consensus 91 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~--- 167 (331)
T 1xdw_A 91 LGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG--- 167 (331)
T ss_dssp TTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHHHHHHHHHH---
T ss_pred CCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHHHHHHHHHH---
Confidence 5677777543333 44478888887761 2346888999999999999999998864
Q ss_pred hhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHH
Q 011816 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIE 431 (477)
Q Consensus 356 ~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~ 431 (477)
.|+ +++.+|+.. .. . +. .++. ..+|.|+++. .|+++=.- ...++|+++.++
T Consensus 168 --~G~-------~V~~~d~~~----~~-~-~~----~~~~----~~~l~ell~~--aDvV~~~~p~t~~t~~li~~~~l~ 222 (331)
T 1xdw_A 168 --MGA-------TVIGEDVFE----IK-G-IE----DYCT----QVSLDEVLEK--SDIITIHAPYIKENGAVVTRDFLK 222 (331)
T ss_dssp --TTC-------EEEEECSSC----CC-S-CT----TTCE----ECCHHHHHHH--CSEEEECCCCCTTTCCSBCHHHHH
T ss_pred --CCC-------EEEEECCCc----cH-H-HH----hccc----cCCHHHHHhh--CCEEEEecCCchHHHHHhCHHHHh
Confidence 264 688888742 11 1 11 1111 1367888876 78877531 223578888888
Q ss_pred HHHcCCCCcEEEEcCC
Q 011816 432 AMASFNEKPLILALSN 447 (477)
Q Consensus 432 ~Ma~~~erPIIFaLSN 447 (477)
.|. +..++.=+|.
T Consensus 223 ~mk---~ga~lin~sr 235 (331)
T 1xdw_A 223 KMK---DGAILVNCAR 235 (331)
T ss_dssp TSC---TTEEEEECSC
T ss_pred hCC---CCcEEEECCC
Confidence 875 5667776664
No 108
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=91.34 E-value=0.29 Score=49.32 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
+|.+++..+. +....++.|+|+|..|-.++..+... .+ .++++++|+. ..+ .....+.|..
T Consensus 116 ~s~laa~~la--~~~~~~v~iIGaG~~a~~~a~al~~~----~~------~~~V~V~~r~----~~~---a~~la~~~~~ 176 (350)
T 1x7d_A 116 TSLMAAQALA--RPNARKMALIGNGAQSEFQALAFHKH----LG------IEEIVAYDTD----PLA---TAKLIANLKE 176 (350)
T ss_dssp HHHHHHHHHS--CTTCCEEEEECCSTTHHHHHHHHHHH----SC------CCEEEEECSS----HHH---HHHHHHHHTT
T ss_pred HHHHHHHHhc--cccCCeEEEECCcHHHHHHHHHHHHh----CC------CcEEEEEcCC----HHH---HHHHHHHHHh
Confidence 4556666553 34567999999999999988776543 23 2678888873 111 2222333321
Q ss_pred c----cCCCCCHHHHhcccCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEEcCC--CCCCCCCCHHH
Q 011816 396 E----HEPVNNLLDAVKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILALSN--PTSQSECTAEE 458 (477)
Q Consensus 396 ~----~~~~~~L~eav~~vkptvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaLSN--Pt~~~E~tpe~ 458 (477)
. .....++.|+++. +|++|=++..+ ..|+.+++ .+.-.|+.++. |. +-|+.++-
T Consensus 177 ~~g~~~~~~~~~~eav~~--aDiVi~aTps~~~~pvl~~~~l------~~G~~V~~vgs~~p~-~~El~~~~ 239 (350)
T 1x7d_A 177 YSGLTIRRASSVAEAVKG--VDIITTVTADKAYATIITPDML------EPGMHLNAVGGDCPG-KTELHADV 239 (350)
T ss_dssp CTTCEEEECSSHHHHHTT--CSEEEECCCCSSEEEEECGGGC------CTTCEEEECSCCBTT-BEEECHHH
T ss_pred ccCceEEEeCCHHHHHhc--CCEEEEeccCCCCCceecHHHc------CCCCEEEECCCCCCC-ceeeCHHH
Confidence 0 1124689999986 99999766543 13444333 24558888876 55 57887653
No 109
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=91.31 E-value=0.085 Score=52.21 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=72.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC----CCchhchhhccccCCCCCHHHHh
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEPVNNLLDAV 407 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~~a~~~~~~~~L~eav 407 (477)
.||.|+|||+.|..+|-+|+.. ++ ...++|+|.+- ++.+ .|.+. .+|.++..-..+-.+++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~-----~~-----~~el~L~Di~~----~k~~g~a~dl~~~-~~~~~~~~v~~~~~~a~ 65 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL-----GV-----AREVVLVDLDR----KLAQAHAEDILHA-TPFAHPVWVWAGSYGDL 65 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSSH----HHHHHHHHHHHTT-GGGSCCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCh----hHHHHHHHHHHHh-HhhcCCeEEEECCHHHh
Confidence 3899999999999988876542 43 25899999852 1110 02111 12221100001236778
Q ss_pred cccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEEEEc
Q 011816 408 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTIILQ 471 (477)
Q Consensus 408 ~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~aifAs 471 (477)
++ +|++|=+.+.+ |. +-+++++.|.++++..+|+-.|||. -.+.+-+++.+ .-.-+|++
T Consensus 66 ~~--aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv---~~~t~~~~k~s~~p~~rviG~ 140 (310)
T 2xxj_A 66 EG--ARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPV---DVMTQVAYALSGLPPGRVVGS 140 (310)
T ss_dssp TT--EEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH---HHHHHHHHHHHTCCGGGEEEC
T ss_pred CC--CCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCch---HHHHHHHHHHcCCCHHHEEec
Confidence 77 99998554443 31 2256777788889999999999998 34445555543 11245666
Q ss_pred C
Q 011816 472 H 472 (477)
Q Consensus 472 G 472 (477)
|
T Consensus 141 g 141 (310)
T 2xxj_A 141 G 141 (310)
T ss_dssp T
T ss_pred C
Confidence 4
No 110
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=91.29 E-value=0.55 Score=45.16 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=57.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc--CCcccCCCCCCCchhchhhc--------cccCCCC-
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KGLIVSSRKDSLQHFKKPWA--------HEHEPVN- 401 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~--~GLi~~~r~~~l~~~k~~~a--------~~~~~~~- 401 (477)
||.|+|+|..|..+|..|... | .+++++|+ +.-- +...++... .......
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~ 62 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDN-----G-------NEVRIWGTEFDTEI-------LKSISAGREHPRLGVKLNGVEIFWP 62 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHH-----C-------CEEEEECCGGGHHH-------HHHHHTTCCBTTTTBCCCSEEEECG
T ss_pred EEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEEccCCHHH-------HHHHHHhCcCcccCccccceEEecH
Confidence 799999999999999998764 4 36888887 3210 111000000 0000112
Q ss_pred -CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 402 -NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 402 -~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
++.|+++. +|++|= +... ...+++++.++...+..+|..++|-.
T Consensus 63 ~~~~~~~~~--~D~vi~-~v~~-~~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 63 EQLEKCLEN--AEVVLL-GVST-DGVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp GGHHHHHTT--CSEEEE-CSCG-GGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred HhHHHHHhc--CCEEEE-cCCh-HHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 67777775 888773 3333 36688888876533456788888865
No 111
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=91.24 E-value=3.1 Score=43.29 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=81.3
Q ss_pred cCCCceeccCCC---chHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHH
Q 011816 297 GTTHLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (477)
Q Consensus 297 r~~~~~FnDDiQ---GTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~ 355 (477)
+..|+|||---- .+|=-++|.+|+..|- .+..|.+.++.|+|.|..|..+|+.+...
T Consensus 101 ~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~IG~~vA~~l~~~-- 178 (416)
T 3k5p_A 101 KRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESL-- 178 (416)
T ss_dssp HTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHHHHHHHHHHHT--
T ss_pred hcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHHHHHHHHHHHHC--
Confidence 457888886533 3455678888887753 24678899999999999999999987642
Q ss_pred hhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 011816 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 431 (477)
Q Consensus 356 ~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~ 431 (477)
|+ +++.+|+..- .... -+ ....+|.|+++. .|+++=.-- ..+.|+++.++
T Consensus 179 ---G~-------~V~~yd~~~~--------~~~~---~~---~~~~sl~ell~~--aDvV~lhvPlt~~T~~li~~~~l~ 232 (416)
T 3k5p_A 179 ---GM-------TVRYYDTSDK--------LQYG---NV---KPAASLDELLKT--SDVVSLHVPSSKSTSKLITEAKLR 232 (416)
T ss_dssp ---TC-------EEEEECTTCC--------CCBT---TB---EECSSHHHHHHH--CSEEEECCCC-----CCBCHHHHH
T ss_pred ---CC-------EEEEECCcch--------hccc---Cc---EecCCHHHHHhh--CCEEEEeCCCCHHHhhhcCHHHHh
Confidence 65 6888887411 1100 01 123568888876 787764321 22578888888
Q ss_pred HHHcCCCCcEEEEcCCCC
Q 011816 432 AMASFNEKPLILALSNPT 449 (477)
Q Consensus 432 ~Ma~~~erPIIFaLSNPt 449 (477)
.|. +..++.=.|.-.
T Consensus 233 ~mk---~gailIN~aRG~ 247 (416)
T 3k5p_A 233 KMK---KGAFLINNARGS 247 (416)
T ss_dssp HSC---TTEEEEECSCTT
T ss_pred hCC---CCcEEEECCCCh
Confidence 885 567777777644
No 112
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=91.22 E-value=0.12 Score=51.60 Aligned_cols=123 Identities=18% Similarity=0.257 Sum_probs=75.8
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC----CCchhchhhccccCCC--CC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEPV--NN 402 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~~a~~~~~~--~~ 402 (477)
++..||.|+|||..|.++|..|+. .|+ + .+.++|.+- ++.+ .|.+. ..+....... .+
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~-----~~~----~--~v~l~Di~~----~~~~g~a~dL~~~-~~~~~~~~~v~~t~ 66 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALI-----KQL----G--DVVLFDIAQ----GMPNGKALDLLQT-CPIEGVDFKVRGTN 66 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH-----TTC----C--EEEEECSSS----SHHHHHHHHHHTT-HHHHTCCCCEEEES
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh-----CCC----c--eEEEEeCCh----HHHHHHHHHHHhh-hhhcCCCcEEEEcC
Confidence 345799999999999999988765 355 2 699999852 2110 02111 1111111111 12
Q ss_pred HHHHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--Cc
Q 011816 403 LLDAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQ 466 (477)
Q Consensus 403 L~eav~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~ 466 (477)
-.+++++ +|++|=+.+.+ |. .-+++++.+.++++..+|+-.|||. -...+-+++.+. -+
T Consensus 67 d~~a~~~--aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPv---d~~t~~~~k~sg~p~~ 141 (321)
T 3p7m_A 67 DYKDLEN--SDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPL---DIMVNMLQKFSGVPDN 141 (321)
T ss_dssp CGGGGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH---HHHHHHHHHHHCCCGG
T ss_pred CHHHHCC--CCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCch---HHHHHHHHHhcCCCHH
Confidence 2578887 99888555443 31 1256778888899999999999997 344455555542 13
Q ss_pred EEEEcC
Q 011816 467 TIILQH 472 (477)
Q Consensus 467 aifAsG 472 (477)
-+|++|
T Consensus 142 rviG~~ 147 (321)
T 3p7m_A 142 KIVGMA 147 (321)
T ss_dssp GEEEEC
T ss_pred HEEeec
Confidence 467766
No 113
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=91.19 E-value=1.1 Score=42.91 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=73.4
Q ss_pred eecCCcccHHHHHHHHcC------CCceeccCCCchHHHHHHHHHHHHHHh-CCCCccceEEEeC-cchHHHHHHHHHHH
Q 011816 281 FEDFANHNAFELLAKYGT------THLVFNDDIQGTASVVLAGVVAALKLI-GGTLAEHRFLFLG-AGEAGTGIAELIAL 352 (477)
Q Consensus 281 ~EDf~~~~af~iL~ryr~------~~~~FnDDiQGTaaV~LAgll~Alr~~-g~~l~d~riv~~G-AGsAg~Gia~ll~~ 352 (477)
++-..-..+.+++++-+. +..+| .|..|.- ..-.|++.+++-. +.+++..+++|.| +|.+|.+++..+.+
T Consensus 64 ~~G~~~~~~~~~~~~~~~~~~gavnt~~~-~~~~G~n-Td~~g~~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L~~ 141 (287)
T 1lu9_A 64 VGGGDMAAGERVFEAVKKRFFGPFRVSCM-LDSNGSN-TTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAG 141 (287)
T ss_dssp EECSCHHHHHHHHHHHHHHCBTTBCCEEE-ECSTTHH-HHHHHHHHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHHHH
T ss_pred EccchHHHHHHHHHHHHHhcCCCeEEEEe-cCCCcCC-chHHHHHHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence 454445577777777652 23344 4455542 3456778888876 7889999999999 89999999988865
Q ss_pred HHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc---------ccCCCCCHHHHhcccCCcEEEeccCCC
Q 011816 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (477)
Q Consensus 353 ~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~---------~~~~~~~L~eav~~vkptvLIG~S~~~ 422 (477)
.|. +++++|++ ..+ .....+.+.. +..+..++.++++. .|++|=.++.+
T Consensus 142 -----~G~-------~V~i~~R~----~~~---~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~DvlVn~ag~g 199 (287)
T 1lu9_A 142 -----EGA-------EVVLCGRK----LDK---AQAAADSVNKRFKVNVTAAETADDASRAEAVKG--AHFVFTAGAIG 199 (287)
T ss_dssp -----TTC-------EEEEEESS----HHH---HHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT--CSEEEECCCTT
T ss_pred -----CcC-------EEEEEECC----HHH---HHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHh--CCEEEECCCcc
Confidence 353 48888874 111 1111111111 11111235666765 79999888654
No 114
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=91.11 E-value=0.19 Score=47.20 Aligned_cols=99 Identities=15% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~ea 406 (477)
.++...||.|+|+|..|..+|..+... |. +.++++|++. +.+....+.+ ......++.++
T Consensus 6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~-----g~------~~v~~~~~~~-------~~~~~~~~~~--g~~~~~~~~~~ 65 (266)
T 3d1l_A 6 RSIEDTPIVLIGAGNLATNLAKALYRK-----GF------RIVQVYSRTE-------ESARELAQKV--EAEYTTDLAEV 65 (266)
T ss_dssp -CGGGCCEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSSH-------HHHHHHHHHT--TCEEESCGGGS
T ss_pred cCCCCCeEEEEcCCHHHHHHHHHHHHC-----CC------eEEEEEeCCH-------HHHHHHHHHc--CCceeCCHHHH
Confidence 345567999999999999999988753 53 2477787631 1111111111 00112456676
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
++. +|++|=+.. .... +++++.+.+.. +..+|.-+||-.
T Consensus 66 ~~~--~Dvvi~av~-~~~~-~~v~~~l~~~~~~~~ivv~~s~~~ 105 (266)
T 3d1l_A 66 NPY--AKLYIVSLK-DSAF-AELLQGIVEGKREEALMVHTAGSI 105 (266)
T ss_dssp CSC--CSEEEECCC-HHHH-HHHHHHHHTTCCTTCEEEECCTTS
T ss_pred hcC--CCEEEEecC-HHHH-HHHHHHHHhhcCCCcEEEECCCCC
Confidence 664 788774333 3233 77777776543 566777777744
No 115
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=91.08 E-value=0.14 Score=49.61 Aligned_cols=105 Identities=14% Similarity=0.283 Sum_probs=61.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc-hhchhhcccc--CCCCCHHHHh
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-HFKKPWAHEH--EPVNNLLDAV 407 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~-~~k~~~a~~~--~~~~~L~eav 407 (477)
..||.|+|||+.|..+|..|... |. ..+++++|++---... ..++ .+..++.... ....+ .+++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~-----g~-----~~~V~l~d~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~-~~~~ 73 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQR-----GI-----AREIVLEDIAKERVEA--EVLDMQHGSSFYPTVSIDGSDD-PEIC 73 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSSHHHHHH--HHHHHHHTGGGSTTCEEEEESC-GGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCChhHHHH--HHHHHHhhhhhcCCeEEEeCCC-HHHh
Confidence 36899999999999999887652 53 1479999985310000 0010 0111111110 00013 3556
Q ss_pred cccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 408 KVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
+. +|++|=+.+.+.. +-+++++.|+++++..+|+.++||..
T Consensus 74 ~~--aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~ 128 (319)
T 1lld_A 74 RD--ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD 128 (319)
T ss_dssp TT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH
T ss_pred CC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchH
Confidence 65 8988855443321 11178888888788889999999983
No 116
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=91.07 E-value=0.16 Score=50.95 Aligned_cols=126 Identities=15% Similarity=0.276 Sum_probs=74.8
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCC---CCHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLD 405 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~---~~L~e 405 (477)
++..||.|+|||..|.++|.+|+. .|+ + .+.++|.+-=..++-...|.+. ..|......+ .+. +
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~-----~~~----~--~v~L~Di~~~~~~g~~~dl~~~-~~~~~~~~~v~~t~d~-~ 71 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGL-----KEL----G--DVVLFDIAEGTPQGKGLDIAES-SPVDGFDAKFTGANDY-A 71 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHH-----TTC----C--EEEEECSSSSHHHHHHHHHHHH-HHHHTCCCCEEEESSG-G
T ss_pred CcCCEEEEECCCHHHHHHHHHHHh-----CCC----C--eEEEEeCCchhHHHHHHHHhch-hhhcCCCCEEEEeCCH-H
Confidence 456799999999999999988875 365 2 6999997421100000012111 1122111111 344 7
Q ss_pred HhcccCCcEEEeccCCC---CC-----C------CHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEE
Q 011816 406 AVKVIKPTILIGSSGVG---RT-----F------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTII 469 (477)
Q Consensus 406 av~~vkptvLIG~S~~~---g~-----F------t~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aif 469 (477)
++++ +|++|=+.+.+ |. | -+++++.|.++++..+|+-.|||. .+...-+++.+. -+-+|
T Consensus 72 a~~~--aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPv---d~~t~~~~k~sg~p~~rvi 146 (324)
T 3gvi_A 72 AIEG--ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPL---DAMVWALQKFSGLPAHKVV 146 (324)
T ss_dssp GGTT--CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH---HHHHHHHHHHHCCCGGGEE
T ss_pred HHCC--CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCc---HHHHHHHHHhcCCCHHHEE
Confidence 8887 99887554433 31 1 256778888899999999999997 344444555442 13466
Q ss_pred EcC
Q 011816 470 LQH 472 (477)
Q Consensus 470 AsG 472 (477)
++|
T Consensus 147 G~~ 149 (324)
T 3gvi_A 147 GMA 149 (324)
T ss_dssp ECC
T ss_pred eec
Confidence 666
No 117
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=91.04 E-value=0.15 Score=50.26 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=70.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC----CCchhchhhccccCC---CCCHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEP---VNNLL 404 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~~a~~~~~---~~~L~ 404 (477)
.||.|+|||..|.++|..++. .|+ . .++++|.+- ++.+ .+.+... +...... ..++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~-----~g~----~--~v~L~Di~~----~~~~g~~~dl~~~~~-~~~~~~~i~~t~d~- 65 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAA-----KEL----G--DIVLLDIVE----GVPQGKALDLYEASP-IEGFDVRVTGTNNY- 65 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC----S--EEEEECSSS----SHHHHHHHHHHTTHH-HHTCCCCEEEESCG-
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CCC----C--eEEEEeCCc----cHHHHHHHhHHHhHh-hcCCCeEEEECCCH-
Confidence 489999999999999998754 253 1 399999741 1100 0111110 1100111 1456
Q ss_pred HHhcccCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEE
Q 011816 405 DAVKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTI 468 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~ai 468 (477)
+++++ +|++|=+.+.+. ..-+++.+.+.+++++-+|+-.|||.. ...+-+++.+. -.-+
T Consensus 66 ~a~~~--aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~---~~t~~~~~~~~~~~~rv 140 (309)
T 1ur5_A 66 ADTAN--SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD---AMTYLAAEVSGFPKERV 140 (309)
T ss_dssp GGGTT--CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHH---HHHHHHHHHHCCCGGGE
T ss_pred HHHCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchH---HHHHHHHHHcCCCHHHE
Confidence 77887 999986654442 122477888888898989888899982 33444544321 1235
Q ss_pred EEcC
Q 011816 469 ILQH 472 (477)
Q Consensus 469 fAsG 472 (477)
|++|
T Consensus 141 iG~g 144 (309)
T 1ur5_A 141 IGQA 144 (309)
T ss_dssp EECC
T ss_pred EECC
Confidence 6665
No 118
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=90.83 E-value=0.3 Score=47.81 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=57.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchh----hcc----ccCCCCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP----WAH----EHEPVNN 402 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~----~a~----~~~~~~~ 402 (477)
+.||.|+|+|+.|..+|..|..+ | .+++++|+..- + ....++. |-. ......+
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~-----G-------~~V~~~~r~~~----~---~~~l~~~g~~~~~~~~~~~~~~~~~ 74 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHEN-----G-------EEVILWARRKE----I---VDLINVSHTSPYVEESKITVRATND 74 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSHH----H---HHHHHHHSCBTTBTTCCCCSEEESC
T ss_pred CCcEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEeCCHH----H---HHHHHHhCCcccCCCCeeeEEEeCC
Confidence 57999999999999999998763 4 36888887410 0 1111110 000 0001135
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 011816 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 451 (477)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 451 (477)
+.+ ++. +|++| ++..+ ...+++++.++. +..+|..++|..+.
T Consensus 75 ~~~-~~~--aDvVi-l~vk~-~~~~~v~~~l~~--~~~~vv~~~nGi~~ 116 (335)
T 1z82_A 75 LEE-IKK--EDILV-IAIPV-QYIREHLLRLPV--KPSMVLNLSKGIEI 116 (335)
T ss_dssp GGG-CCT--TEEEE-ECSCG-GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred HHH-hcC--CCEEE-EECCH-HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence 666 654 78666 33333 567778777654 55678889997653
No 119
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=90.79 E-value=1.8 Score=42.83 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCCceeccCCCc---hHHHHHHHHHHHHHHh---------------------CCCCccceEEEeCcchHHHHHHHHHHHH
Q 011816 298 TTHLVFNDDIQG---TASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 298 ~~~~~FnDDiQG---TaaV~LAgll~Alr~~---------------------g~~l~d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
..|.|.|----. +|=-+++.+|+..|-. +..+.+.+|.|+|.|..|..+|+.+..
T Consensus 87 ~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~- 165 (311)
T 2cuk_A 87 RGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALA- 165 (311)
T ss_dssp TTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHH-
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHH-
Confidence 456666643322 3444677788776531 457889999999999999999998864
Q ss_pred HHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHH
Q 011816 354 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEV 429 (477)
Q Consensus 354 ~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~ev 429 (477)
.|+ +++.+|+.. .. .. + ...+|.|+++. .|+++=.- ...++++++.
T Consensus 166 ----~G~-------~V~~~d~~~----~~---~~------~----~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~ 215 (311)
T 2cuk_A 166 ----FGM-------RVVYHARTP----KP---LP------Y----PFLSLEELLKE--ADVVSLHTPLTPETHRLLNRER 215 (311)
T ss_dssp ----TTC-------EEEEECSSC----CS---SS------S----CBCCHHHHHHH--CSEEEECCCCCTTTTTCBCHHH
T ss_pred ----CCC-------EEEEECCCC----cc---cc------c----ccCCHHHHHhh--CCEEEEeCCCChHHHhhcCHHH
Confidence 254 688888742 11 11 1 12356666665 67666441 1234566666
Q ss_pred HHHHHcCCCCcEEEEcCC
Q 011816 430 IEAMASFNEKPLILALSN 447 (477)
Q Consensus 430 v~~Ma~~~erPIIFaLSN 447 (477)
++.|. +..++.=.|.
T Consensus 216 l~~mk---~ga~lin~sr 230 (311)
T 2cuk_A 216 LFAMK---RGAILLNTAR 230 (311)
T ss_dssp HTTSC---TTCEEEECSC
T ss_pred HhhCC---CCcEEEECCC
Confidence 66663 4556666665
No 120
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Probab=90.65 E-value=0.57 Score=45.96 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
++.+++..+. +....+|.|+|+|..|..++..+... .|+ ++++++|+. .++ .....+.+..
T Consensus 122 ~~~la~~~la--~~~~~~igiIG~G~~g~~~a~~l~~~----~g~------~~V~v~dr~----~~~---~~~l~~~~~~ 182 (312)
T 2i99_A 122 VSAIATKFLK--PPSSEVLCILGAGVQAYSHYEIFTEQ----FSF------KEVRIWNRT----KEN---AEKFADTVQG 182 (312)
T ss_dssp HHHHHHHHHS--CTTCCEEEEECCSHHHHHHHHHHHHH----CCC------SEEEEECSS----HHH---HHHHHHHSSS
T ss_pred HHHHHHHHhC--CCCCcEEEEECCcHHHHHHHHHHHHh----CCC------cEEEEEcCC----HHH---HHHHHHHhhC
Confidence 3445554342 44667999999999999999888653 243 578888762 111 1112111110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcCC--CCCCCCCCH
Q 011816 396 EHEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSN--PTSQSECTA 456 (477)
Q Consensus 396 ~~~~~~~L~eav~~vkptvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSN--Pt~~~E~tp 456 (477)
......++.|+++. +|++|=+... ..+|.++ . ..+..+|+.+|+ |. .-|+.+
T Consensus 183 ~~~~~~~~~e~v~~--aDiVi~atp~~~~v~~~~---~---l~~g~~vi~~g~~~p~-~~el~~ 237 (312)
T 2i99_A 183 EVRVCSSVQEAVAG--ADVIITVTLATEPILFGE---W---VKPGAHINAVGASRPD-WRELDD 237 (312)
T ss_dssp CCEECSSHHHHHTT--CSEEEECCCCSSCCBCGG---G---SCTTCEEEECCCCSTT-CCSBCH
T ss_pred CeEEeCCHHHHHhc--CCEEEEEeCCCCcccCHH---H---cCCCcEEEeCCCCCCC-ceeccH
Confidence 01124689999987 8988855432 2234332 2 235668888853 54 356654
No 121
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=90.62 E-value=1.6 Score=44.12 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=80.1
Q ss_pred CCCceeccCCC---chHHHHHHHHHHHHHH--------------------hCCCCccceEEEeCcchHHHHHHHHHHHHH
Q 011816 298 TTHLVFNDDIQ---GTASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 354 (477)
Q Consensus 298 ~~~~~FnDDiQ---GTaaV~LAgll~Alr~--------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~ 354 (477)
..|+|.|---- .+|=-+++-+|+..|- .+..|.+.+|.|+|.|..|..+|+.+..
T Consensus 108 ~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~-- 185 (351)
T 3jtm_A 108 AGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKP-- 185 (351)
T ss_dssp TTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGG--
T ss_pred cCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHH--
Confidence 45666664322 2344577777877752 2567999999999999999999998864
Q ss_pred HhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHH
Q 011816 355 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVI 430 (477)
Q Consensus 355 ~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv 430 (477)
.|+ +++.+|+... . ....+.. ......+|.|+++. .|+++=.- ...+.|+++.+
T Consensus 186 ---~G~-------~V~~~dr~~~------~-~~~~~~~---g~~~~~~l~ell~~--aDvV~l~~Plt~~t~~li~~~~l 243 (351)
T 3jtm_A 186 ---FGC-------NLLYHDRLQM------A-PELEKET---GAKFVEDLNEMLPK--CDVIVINMPLTEKTRGMFNKELI 243 (351)
T ss_dssp ---GCC-------EEEEECSSCC------C-HHHHHHH---CCEECSCHHHHGGG--CSEEEECSCCCTTTTTCBSHHHH
T ss_pred ---CCC-------EEEEeCCCcc------C-HHHHHhC---CCeEcCCHHHHHhc--CCEEEECCCCCHHHHHhhcHHHH
Confidence 264 5888886421 0 1111100 01113578888887 88887331 22357888888
Q ss_pred HHHHcCCCCcEEEEcCCCC
Q 011816 431 EAMASFNEKPLILALSNPT 449 (477)
Q Consensus 431 ~~Ma~~~erPIIFaLSNPt 449 (477)
+.|. +..+|.=.|+-.
T Consensus 244 ~~mk---~gailIN~aRG~ 259 (351)
T 3jtm_A 244 GKLK---KGVLIVNNARGA 259 (351)
T ss_dssp HHSC---TTEEEEECSCGG
T ss_pred hcCC---CCCEEEECcCch
Confidence 8886 677777777633
No 122
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=90.60 E-value=0.15 Score=50.93 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=74.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCC--CCHHHHhccc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~--~~L~eav~~v 410 (477)
||.|+|||..|.++|..|+.. |+ ...+.++|.+-=..++-...|.+. ..+....... .+..+++++
T Consensus 2 kv~ViGaG~vG~~~a~~l~~~-----~~-----~~el~l~D~~~~k~~g~a~DL~~~-~~~~~~~~~v~~~~~~~a~~~- 69 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVARQ-----DV-----AKEVVMVDIKDGMPQGKALDMRES-SPIHGFDTRVTGTNDYGPTED- 69 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC-----SSEEEEECSSTTHHHHHHHHHHHH-HHHHTCCCEEEEESSSGGGTT-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCchHHHHHHHHHHhcc-ccccCCCcEEEECCCHHHhCC-
Confidence 799999999999999988764 54 258999998521111000012111 1121111111 245677887
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcC
Q 011816 411 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 411 kptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsG 472 (477)
+|++|=+.+.+ |- +-+++++.++++++..+|+-.|||. .....-+++.+. -+-+|++|
T Consensus 70 -aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPv---d~~t~~~~k~~g~p~~rviG~~ 143 (314)
T 3nep_X 70 -SDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL---DVMTYVAYEASGFPTNRVMGMA 143 (314)
T ss_dssp -CSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSH---HHHHHHHHHHHTCCGGGEEECC
T ss_pred -CCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCch---hHHHHHHHHhcCCChHHEEeec
Confidence 99887554433 31 2256778888999999999999997 444555555442 23466665
No 123
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=90.60 E-value=0.56 Score=49.14 Aligned_cols=102 Identities=11% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHH
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~ea 406 (477)
.++..+|.|+|+|..|.++|..|... |. +++++|+. . +......+.+.. ......++.|+
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~-----G~-------~V~v~~r~----~---~~~~~l~~~~~~~gi~~~~s~~e~ 72 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESR-----GY-------TVSIFNRS----R---EKTEEVIAENPGKKLVPYYTVKEF 72 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTT-----TC-------CEEEECSS----H---HHHHHHHHHSTTSCEEECSSHHHH
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhC-----CC-------eEEEEeCC----H---HHHHHHHhhCCCCCeEEeCCHHHH
Confidence 35678999999999999999998753 53 57777763 1 111111111100 01123578898
Q ss_pred hccc-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 407 VKVI-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 407 v~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
++.. ++|++| ++.+.+...+++++.+...- +..||.-+||-.
T Consensus 73 v~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~ 116 (480)
T 2zyd_A 73 VESLETPRRIL-LMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTF 116 (480)
T ss_dssp HHTBCSSCEEE-ECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred HhCCCCCCEEE-EECCCHHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 8753 488877 55555567888998887544 456888899865
No 124
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=90.58 E-value=2.6 Score=41.51 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCCceecc-CCCc--hHHHHHHHHHHHHHHh-----------------CCCCccceEEEeCcchHHHHHHHHHHHHHHhh
Q 011816 298 TTHLVFND-DIQG--TASVVLAGVVAALKLI-----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 357 (477)
Q Consensus 298 ~~~~~FnD-DiQG--TaaV~LAgll~Alr~~-----------------g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~ 357 (477)
..+++.|- +... +|=-+++.+|+..|-. +..|.+.++.|+|.|..|..+|+.+..
T Consensus 71 ~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~----- 145 (303)
T 1qp8_A 71 PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAA----- 145 (303)
T ss_dssp TTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHH-----
T ss_pred cCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHH-----
Confidence 46777774 3332 2334788888876531 226889999999999999999998864
Q ss_pred CCCChhhhcCeEEEEccCC
Q 011816 358 TKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 358 ~G~~~eeA~~~i~lvD~~G 376 (477)
.|+ +++.+|+..
T Consensus 146 ~G~-------~V~~~dr~~ 157 (303)
T 1qp8_A 146 LGA-------QVRGFSRTP 157 (303)
T ss_dssp TTC-------EEEEECSSC
T ss_pred CCC-------EEEEECCCc
Confidence 264 688888753
No 125
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=90.46 E-value=0.51 Score=47.58 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=62.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC-------CCCchhchhhccc---
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 396 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~-------~~l~~~k~~~a~~--- 396 (477)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+=.++-. +++-..|..-+.+
T Consensus 114 ~~L~~~~VlvvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~ 182 (353)
T 3h5n_A 114 DKLKNAKVVILGCGGIGNHVSVILATS-----GI------GEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELL 182 (353)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHhC-----CC------CeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHH
Confidence 457789999999999999999999876 65 69999998632111100 0011112111110
Q ss_pred --cC---------CC--CC-HHHHhcccCCcEEEeccCCCCCC-CHHHHHHHHcCCCCcEEEE
Q 011816 397 --HE---------PV--NN-LLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILA 444 (477)
Q Consensus 397 --~~---------~~--~~-L~eav~~vkptvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFa 444 (477)
.+ .. .+ +.+ ++. .|++|-++. ..- +...|...+.....|.|.+
T Consensus 183 ~~np~v~v~~~~~~i~~~~~~~~-~~~--~DlVvd~~D--n~~~~r~~ln~~c~~~~~p~i~~ 240 (353)
T 3h5n_A 183 KRNSEISVSEIALNINDYTDLHK-VPE--ADIWVVSAD--HPFNLINWVNKYCVRANQPYINA 240 (353)
T ss_dssp HHCTTSEEEEEECCCCSGGGGGG-SCC--CSEEEECCC--CSTTHHHHHHHHHHHTTCCEEEE
T ss_pred HHCCCCeEEEeecccCchhhhhH-hcc--CCEEEEecC--ChHHHHHHHHHHHHHhCCCEEEE
Confidence 01 11 11 445 554 899987653 223 6777777777778999864
No 126
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=90.45 E-value=0.23 Score=47.94 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=99.6
Q ss_pred HHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHH-hcCCCeeeeeecCCcccHH
Q 011816 212 ALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQ-NYGEKVLIQFEDFANHNAF 290 (477)
Q Consensus 212 ~LY~a~gGI~P~~~lPI~LDvgTnne~LL~Dp~YlG~r~~R~~g~~y~~~idefv~av~~-~fGp~~lIq~EDf~~~~af 290 (477)
..|.++ ||| ...+.+|+. .++ +.++++.++. .|.+ ++..==-...++
T Consensus 32 ~~~~~~-gi~---~~y~~~~~~--~~~-----------------------l~~~i~~l~~~~~~G---~nVtiP~k~~i~ 79 (287)
T 1nvt_A 32 AAFKDK-GLN---YVYVAFDVL--PEN-----------------------LKYVIDGAKALGIVG---FNVTIPHKIEIM 79 (287)
T ss_dssp HHHHHT-TCC---EEEEEEECC--GGG-----------------------GGGHHHHHHHHTCCE---EEECTTSTTGGG
T ss_pred HHHHHc-CCC---cEEEEEEcC--HHH-----------------------HHHHHHHHHhCCCCE---EEEccCCHHHHH
Confidence 466666 798 777888874 232 3556666544 5655 555432233333
Q ss_pred HHHH-------HHcC-CCceeccC-CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCC
Q 011816 291 ELLA-------KYGT-THLVFNDD-IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAP 361 (477)
Q Consensus 291 ~iL~-------ryr~-~~~~FnDD-iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~ 361 (477)
.+++ ...- +..+++|. ..|+-. ...|++.+|+..+.+++..+++|+|||.+|.++|..|.. .|
T Consensus 80 ~~~d~~~~~a~~igavnt~~~~~g~l~g~nT-d~~G~~~~L~~~~~~l~~k~vlV~GaGgiG~aia~~L~~-----~G-- 151 (287)
T 1nvt_A 80 KYLDEIDKDAQLIGAVNTIKIEDGKAIGYNT-DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAK-----DN-- 151 (287)
T ss_dssp GGCSEECHHHHHHTCCCEEEEETTEEEEECC-HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTS-----SS--
T ss_pred HHHHhcCHHHHHhCceeeEEeeCCEEEEecC-CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHH-----CC--
Confidence 3333 1122 22334443 245222 678999999988889999999999999777777776643 12
Q ss_pred hhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-------cCCCCCHHHHhcccCCcEEEeccCCCCCCCH---HHHH
Q 011816 362 VEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTK---EVIE 431 (477)
Q Consensus 362 ~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-------~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~---evv~ 431 (477)
+++++|++ .++ +....+.+... .-...++.+.+. ++|++|-.++.+. +.. ..+.
T Consensus 152 ------~V~v~~r~----~~~---~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~--~~DilVn~ag~~~-~~~~~~~~~~ 215 (287)
T 1nvt_A 152 ------NIIIANRT----VEK---AEALAKEIAEKLNKKFGEEVKFSGLDVDLD--GVDIIINATPIGM-YPNIDVEPIV 215 (287)
T ss_dssp ------EEEEECSS----HHH---HHHHHHHHHHHHTCCHHHHEEEECTTCCCT--TCCEEEECSCTTC-TTCCSSCCSS
T ss_pred ------CEEEEECC----HHH---HHHHHHHHhhhcccccceeEEEeeHHHhhC--CCCEEEECCCCCC-CCCCCCCCCC
Confidence 78888874 111 11222222110 001112233344 4899999887653 210 0010
Q ss_pred HHHcCCCCcEEEEcC-CCC
Q 011816 432 AMASFNEKPLILALS-NPT 449 (477)
Q Consensus 432 ~Ma~~~erPIIFaLS-NPt 449 (477)
......+..+++-++ ||.
T Consensus 216 ~~~~l~~~~~v~Dv~y~p~ 234 (287)
T 1nvt_A 216 KAEKLREDMVVMDLIYNPL 234 (287)
T ss_dssp CSTTCCSSSEEEECCCSSS
T ss_pred CHHHcCCCCEEEEeeeCCc
Confidence 011123567889887 553
No 127
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=90.37 E-value=1.5 Score=44.29 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHH--------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeE
Q 011816 310 TASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (477)
Q Consensus 310 TaaV~LAgll~Alr~--------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i 369 (477)
+|=-+++-+|+..|- .|..|.+.+|.|+|.|..|..+|+.+.. .|+ ++
T Consensus 130 vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~-----~G~-------~V 197 (340)
T 4dgs_A 130 VADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEA-----FGM-------SV 197 (340)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHT-----TTC-------EE
T ss_pred HHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHH-----CCC-------EE
Confidence 455567777777652 2467899999999999999999999864 364 68
Q ss_pred EEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 370 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 370 ~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
+.+|+.. .. . . .+. ...+|.|+++. .|+++=.-- ..+.++++.++.|. +..++.-.
T Consensus 198 ~~~dr~~----~~-~-~-----~~~----~~~sl~ell~~--aDvVil~vP~t~~t~~li~~~~l~~mk---~gailIN~ 257 (340)
T 4dgs_A 198 RYWNRST----LS-G-V-----DWI----AHQSPVDLARD--SDVLAVCVAASAATQNIVDASLLQALG---PEGIVVNV 257 (340)
T ss_dssp EEECSSC----CT-T-S-----CCE----ECSSHHHHHHT--CSEEEECC----------CHHHHHHTT---TTCEEEEC
T ss_pred EEEcCCc----cc-c-c-----Cce----ecCCHHHHHhc--CCEEEEeCCCCHHHHHHhhHHHHhcCC---CCCEEEEC
Confidence 8888742 11 0 0 111 13579999987 898874321 23578888888886 56788877
Q ss_pred CCCCCCCCCCHHHHh
Q 011816 446 SNPTSQSECTAEEAY 460 (477)
Q Consensus 446 SNPt~~~E~tpe~A~ 460 (477)
|.-..--|-.-.+|+
T Consensus 258 aRG~vvde~aL~~aL 272 (340)
T 4dgs_A 258 ARGNVVDEDALIEAL 272 (340)
T ss_dssp SCC------------
T ss_pred CCCcccCHHHHHHHH
Confidence 764432333333444
No 128
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=90.31 E-value=0.81 Score=44.81 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=60.2
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
.|++.+++-.| +.+++|+|||.||.+++..|.+. | .+|+++++. .++.+.+. .+.-
T Consensus 107 ~Gf~~~L~~~~----~k~vlvlGaGGaaraia~~L~~~-----G-------~~v~V~nRt----~~ka~~la----~~~~ 162 (269)
T 3phh_A 107 LGFYLSLKQKN----YQNALILGAGGSAKALACELKKQ-----G-------LQVSVLNRS----SRGLDFFQ----RLGC 162 (269)
T ss_dssp HHHHHHCC-------CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSS----CTTHHHHH----HHTC
T ss_pred HHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC----HHHHHHHH----HCCC
Confidence 45667765433 78999999999999999888653 4 478988874 33321121 1110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC----CCCCHHHHH-HHHcCCCCcEEEEcC-CC
Q 011816 396 EHEPVNNLLDAVKVIKPTILIGSSGVG----RTFTKEVIE-AMASFNEKPLILALS-NP 448 (477)
Q Consensus 396 ~~~~~~~L~eav~~vkptvLIG~S~~~----g~Ft~evv~-~Ma~~~erPIIFaLS-NP 448 (477)
......++ . ++|++|-++..+ -.+.++.+. .+. +..+|+=++ ||
T Consensus 163 ~~~~~~~l----~--~~DiVInaTp~Gm~~~~~l~~~~l~~~l~---~~~~v~D~vY~P 212 (269)
T 3phh_A 163 DCFMEPPK----S--AFDLIINATSASLHNELPLNKEVLKGYFK---EGKLAYDLAYGF 212 (269)
T ss_dssp EEESSCCS----S--CCSEEEECCTTCCCCSCSSCHHHHHHHHH---HCSEEEESCCSS
T ss_pred eEecHHHh----c--cCCEEEEcccCCCCCCCCCChHHHHhhCC---CCCEEEEeCCCC
Confidence 11111222 1 599999776544 157888665 454 467888664 44
No 129
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=89.95 E-value=0.2 Score=49.92 Aligned_cols=127 Identities=16% Similarity=0.246 Sum_probs=77.2
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC--cccCCCCCCCchhchhhccccCCC--CCHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG--LIVSSRKDSLQHFKKPWAHEHEPV--NNLL 404 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G--Li~~~r~~~l~~~k~~~a~~~~~~--~~L~ 404 (477)
.+..||.|+|||..|.++|..++.. |+ ..+.++|.+- -..++....|.+. .++......+ .+-.
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~-----g~------~~v~l~D~~~~~~~~~g~a~dl~~~-~~~~~~~~~i~~t~d~ 73 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQK-----EL------ADVVLVDIPQLENPTKGKALDMLEA-SPVQGFDANIIGTSDY 73 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-----TC------CEEEEECCGGGHHHHHHHHHHHHHH-HHHHTCCCCEEEESCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----CC------CeEEEEeccchHHHHHHhhhhHHHh-hhhccCCCEEEEcCCH
Confidence 4567999999999999999988752 54 3789999851 1111110012221 2333211111 1224
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEE
Q 011816 405 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTI 468 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~ai 468 (477)
++++. +|++|=+.+.+ |- .-+++++.++++++..+|+-.|||. .....-+++.+. -+-+
T Consensus 74 ~a~~~--aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPv---d~~t~~~~k~sg~p~~rv 148 (315)
T 3tl2_A 74 ADTAD--SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPV---DAMTYSVFKEAGFPKERV 148 (315)
T ss_dssp GGGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH---HHHHHHHHHHHCCCGGGE
T ss_pred HHhCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChH---HHHHHHHHHhcCCChHHE
Confidence 67776 99887555433 31 2357888888999999999999997 455555555441 2345
Q ss_pred EEcC
Q 011816 469 ILQH 472 (477)
Q Consensus 469 fAsG 472 (477)
|++|
T Consensus 149 iG~g 152 (315)
T 3tl2_A 149 IGQS 152 (315)
T ss_dssp EECC
T ss_pred Eeec
Confidence 6664
No 130
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=89.88 E-value=0.17 Score=50.73 Aligned_cols=126 Identities=15% Similarity=0.197 Sum_probs=76.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCC-CCCHHHHhcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP-VNNLLDAVKV 409 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~-~~~L~eav~~ 409 (477)
-.||.|+|||..|.++|..|+.. |+ ...+.++|.+-=..++-.-+|.+. .+|....-. ..+-.+++++
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~-----~~-----~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~~~v~i~~~~~~a~~~ 73 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQ-----GI-----TDELVVIDVNKEKAMGDVMDLNHG-KAFAPQPVKTSYGTYEDCKD 73 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSCHHHHHHHHHHHHHT-GGGSSSCCEEEEECGGGGTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CceEEEEecchHHHHHHHHHHHhc-cccccCCeEEEeCcHHHhCC
Confidence 46899999999999999988763 54 258999997310000000012222 233211000 1123467776
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcC
Q 011816 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsG 472 (477)
+|++|=+.+.+ |- .-+++++.++++++..+|+-.|||. .+..+-+++.+. -+-+|++|
T Consensus 74 --aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPv---d~~t~~~~k~~g~p~~rviG~g 147 (326)
T 3pqe_A 74 --ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPV---DILTYATWKFSGLPKERVIGSG 147 (326)
T ss_dssp --CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH---HHHHHHHHHHHCCCGGGEEECT
T ss_pred --CCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChH---HHHHHHHHHhcCCCHHHEEeec
Confidence 89887554433 31 1257778888999999999999998 455666666542 24466765
No 131
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=89.83 E-value=0.7 Score=45.06 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=63.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch-----hhccc---cCC---
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-----PWAHE---HEP--- 399 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-----~~a~~---~~~--- 399 (477)
..||.|+|+|..|.++|..|... |........+++++|+..-.. .+ ......++ .|-.. ...
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~-----g~~~~~~~~~V~~~~r~~~~~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGN-----AAQLAQFDPRVTMWVFEEDIG-GK-KLTEIINTQHENVKYLPGHKLPPNVVA 80 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-----HHHCTTEEEEEEEECCCCBSS-SS-BHHHHHHHHSCCTTTSTTCCCCTTEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-----CCcccCCCCeEEEEEcChhhh-hh-HHHHHHHhcCcccccCCcccCccCeEE
Confidence 46899999999999999999764 210000014688888753211 00 00111110 01000 001
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCCC
Q 011816 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 450 (477)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 450 (477)
..++.++++. +|++| ++... ...+++++.++.+. +..+|..++|-.+
T Consensus 81 ~~~~~~~~~~--aD~Vi-lav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 81 VPDVVQAAED--ADILI-FVVPH-QFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp ESSHHHHHTT--CSEEE-ECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred EcCHHHHHcC--CCEEE-EeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 1468888876 89877 44433 57788999887643 4678888999654
No 132
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=89.72 E-value=1.1 Score=45.78 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHHHHH---------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcC
Q 011816 309 GTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (477)
Q Consensus 309 GTaaV~LAgll~Alr~---------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~ 367 (477)
.+|=-+++-+|+..|- .+..|.+.++.|+|.|..|-.+|+.+.. .|+
T Consensus 133 ~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~-----fG~------- 200 (365)
T 4hy3_A 133 PVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSG-----FRA------- 200 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTT-----SCC-------
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhh-----CCC-------
Confidence 3455567777776652 2346789999999999999999998743 354
Q ss_pred eEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEE
Q 011816 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLIL 443 (477)
Q Consensus 368 ~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIF 443 (477)
+++.+|+.. . .......-+ ...+|.|+++. .|+++=. ....++|+++.++.|. +..|+.
T Consensus 201 ~V~~~d~~~----~----~~~~~~~g~----~~~~l~ell~~--aDvV~l~~Plt~~T~~li~~~~l~~mk---~gailI 263 (365)
T 4hy3_A 201 RIRVFDPWL----P----RSMLEENGV----EPASLEDVLTK--SDFIFVVAAVTSENKRFLGAEAFSSMR---RGAAFI 263 (365)
T ss_dssp EEEEECSSS----C----HHHHHHTTC----EECCHHHHHHS--CSEEEECSCSSCC---CCCHHHHHTSC---TTCEEE
T ss_pred EEEEECCCC----C----HHHHhhcCe----eeCCHHHHHhc--CCEEEEcCcCCHHHHhhcCHHHHhcCC---CCcEEE
Confidence 688787641 0 010110001 12468888876 7887732 2234578888888885 566776
Q ss_pred EcCC
Q 011816 444 ALSN 447 (477)
Q Consensus 444 aLSN 447 (477)
=.|.
T Consensus 264 N~aR 267 (365)
T 4hy3_A 264 LLSR 267 (365)
T ss_dssp ECSC
T ss_pred ECcC
Confidence 6664
No 133
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=89.68 E-value=4.3 Score=41.77 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=50.8
Q ss_pred cCCCceeccCCC---chHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHH
Q 011816 297 GTTHLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (477)
Q Consensus 297 r~~~~~FnDDiQ---GTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~ 355 (477)
+..|+|||---- .+|=-++|.+|+..|- .|..|.+.++.|+|-|..|..+|+.+..
T Consensus 90 ~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~vA~~l~~--- 166 (404)
T 1sc6_A 90 KRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAES--- 166 (404)
T ss_dssp HTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHH---
T ss_pred hCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHHHHHHHHHHH---
Confidence 356888886543 3455578888888763 2567999999999999999999998864
Q ss_pred hhCCCChhhhcCeEEEEccC
Q 011816 356 KQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 356 ~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+ +++.+|+.
T Consensus 167 --~G~-------~V~~~d~~ 177 (404)
T 1sc6_A 167 --LGM-------YVYFYDIE 177 (404)
T ss_dssp --TTC-------EEEEECSS
T ss_pred --CCC-------EEEEEcCC
Confidence 264 68888874
No 134
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}
Probab=89.60 E-value=2.1 Score=42.64 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=56.0
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~ea 406 (477)
..|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|+..- . ...+..-+. ..+|.++
T Consensus 142 ~~l~g~~vgIIG~G~iG~~vA~~l~~-----~G~-------~V~~~d~~~~----~----~~~~~~g~~----~~~l~e~ 197 (333)
T 2d0i_A 142 ESLYGKKVGILGMGAIGKAIARRLIP-----FGV-------KLYYWSRHRK----V----NVEKELKAR----YMDIDEL 197 (333)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGG-----GTC-------EEEEECSSCC----H----HHHHHHTEE----ECCHHHH
T ss_pred CCCCcCEEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCCcc----h----hhhhhcCce----ecCHHHH
Confidence 67999999999999999999998753 253 6888887421 0 000000011 1267777
Q ss_pred hcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 407 VKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 407 v~~vkptvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
++. +|+++=.-. ..++++++.++.|. +. ++.-.|
T Consensus 198 l~~--aDiVil~vp~~~~t~~~i~~~~~~~mk---~g-ilin~s 235 (333)
T 2d0i_A 198 LEK--SDIVILALPLTRDTYHIINEERVKKLE---GK-YLVNIG 235 (333)
T ss_dssp HHH--CSEEEECCCCCTTTTTSBCHHHHHHTB---TC-EEEECS
T ss_pred Hhh--CCEEEEcCCCChHHHHHhCHHHHhhCC---CC-EEEECC
Confidence 765 777763321 12467777777774 44 665555
No 135
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=89.60 E-value=0.2 Score=49.51 Aligned_cols=116 Identities=17% Similarity=0.326 Sum_probs=71.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc------ccCCC---CCH
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH------EHEPV---NNL 403 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~------~~~~~---~~L 403 (477)
||.|+|||..|.++|-.++.. |+ ..++|+|.+ .++ +......+.+ ..... .+.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-----~l------~el~L~Di~----~~~---~~g~~~dl~~~~~~~~~~~~i~~t~d~ 62 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-----GY------DDLLLIART----PGK---PQGEALDLAHAAAELGVDIRISGSNSY 62 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-----TC------SCEEEECSS----TTH---HHHHHHHHHHHHHHHTCCCCEEEESCG
T ss_pred CEEEECcCHHHHHHHHHHHhC-----CC------CEEEEEcCC----hhh---HHHHHHHHHHhhhhcCCCeEEEECCCH
Confidence 689999999999999777643 44 379999985 222 1111111111 01111 355
Q ss_pred HHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcE
Q 011816 404 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQT 467 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~a 467 (477)
+++++ +|++|=+.+.+.. .-+++++.|.++++..+|+-.|||. -...+-+++.+. -.-
T Consensus 63 -~a~~~--aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv---~~~t~~~~k~~~~p~~r 136 (308)
T 2d4a_B 63 -EDMRG--SDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPV---DAMTYVMYKKTGFPRER 136 (308)
T ss_dssp -GGGTT--CSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH---HHHHHHHHHHHCCCGGG
T ss_pred -HHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCChhh
Confidence 67877 9999866555431 2457888888889998877789998 333444544321 123
Q ss_pred EEEcC
Q 011816 468 IILQH 472 (477)
Q Consensus 468 ifAsG 472 (477)
+|++|
T Consensus 137 viG~g 141 (308)
T 2d4a_B 137 VIGFS 141 (308)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 56664
No 136
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=89.54 E-value=0.072 Score=53.83 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=75.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc--CCCCCHHHHhc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVK 408 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~ 408 (477)
..||.|+|||..|.++|..++.. |+ ...+.++|.+-=..++-..+|.+. ..|.... ....++.+ ++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~-----g~-----~~ev~L~Di~~~~~~g~a~DL~~~-~~~~~~~~i~~t~d~~~-~~ 88 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMK-----DL-----ADEVALVDVMEDKLKGEMMDLEHG-SLFLHTAKIVSGKDYSV-SA 88 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHH-----CC-----CSEEEEECSCHHHHHHHHHHHHHH-GGGSCCSEEEEESSSCS-CS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEECCHHHHHHHHHHhhhh-hhcccCCeEEEcCCHHH-hC
Confidence 47999999999999999988763 54 247999997310000000012221 1332211 01134544 66
Q ss_pred ccCCcEEEeccCC---CC-----C------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccC--CcEEEEcC
Q 011816 409 VIKPTILIGSSGV---GR-----T------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--VQTIILQH 472 (477)
Q Consensus 409 ~vkptvLIG~S~~---~g-----~------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~--G~aifAsG 472 (477)
+ +|++|=+.+. +| + +-+++++.+.++++..+|+-.|||. .+...-+++.+. -+-+|++|
T Consensus 89 d--aDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPv---di~t~~~~k~sg~p~~rViG~g 163 (330)
T 3ldh_A 89 G--SKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELG---TDKNKQDWKLSGLPMHRIIGSG 163 (330)
T ss_dssp S--CSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSH---HHHHHHHHHHHCCCGGGEECCT
T ss_pred C--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCcc---HHHHHHHHHHhCCCHHHeeccc
Confidence 6 9998833333 33 1 2356778888999999999999997 456666666552 13466665
No 137
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=89.54 E-value=3.1 Score=41.40 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=79.7
Q ss_pred CCCceeccCCCch---HHHHHHHHHHHHHH-------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHH
Q 011816 298 TTHLVFNDDIQGT---ASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (477)
Q Consensus 298 ~~~~~FnDDiQGT---aaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~ 355 (477)
..|.|.|---..+ |=-+++.+|+..|- .+..|.+.++.|+|.|..|..+|+.+..
T Consensus 90 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~--- 166 (333)
T 1dxy_A 90 YGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKG--- 166 (333)
T ss_dssp TTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHH---
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHHHHHHHH---
Confidence 4677777543333 44478888877651 3457899999999999999999998864
Q ss_pred hhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 011816 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 431 (477)
Q Consensus 356 ~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~ 431 (477)
.|+ +++.+|+.. .. . .. .++. ..+|.|+++. .|+++=.-- ..++|+++.++
T Consensus 167 --~G~-------~V~~~d~~~----~~-~-~~----~~~~----~~~l~ell~~--aDvV~~~~P~~~~t~~li~~~~l~ 221 (333)
T 1dxy_A 167 --FGA-------KVIAYDPYP----MK-G-DH----PDFD----YVSLEDLFKQ--SDVIDLHVPGIEQNTHIINEAAFN 221 (333)
T ss_dssp --TTC-------EEEEECSSC----CS-S-CC----TTCE----ECCHHHHHHH--CSEEEECCCCCGGGTTSBCHHHHH
T ss_pred --CCC-------EEEEECCCc----ch-h-hH----hccc----cCCHHHHHhc--CCEEEEcCCCchhHHHHhCHHHHh
Confidence 264 688888752 11 1 11 1121 1368888876 888875421 23578888888
Q ss_pred HHHcCCCCcEEEEcCCC
Q 011816 432 AMASFNEKPLILALSNP 448 (477)
Q Consensus 432 ~Ma~~~erPIIFaLSNP 448 (477)
.|. +..++.=.|.-
T Consensus 222 ~mk---~ga~lIn~srg 235 (333)
T 1dxy_A 222 LMK---PGAIVINTARP 235 (333)
T ss_dssp HSC---TTEEEEECSCT
T ss_pred hCC---CCcEEEECCCC
Confidence 885 56677777653
No 138
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=89.47 E-value=1.1 Score=44.23 Aligned_cols=113 Identities=19% Similarity=0.166 Sum_probs=68.9
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~ 395 (477)
++.+++..+.. ....++.|+|+|..|-.+++.+... .+ .++++++|+. .++ .....+.|..
T Consensus 112 ~s~laa~~la~--~~~~~v~iIGaG~~a~~~~~al~~~----~~------~~~V~v~~r~----~~~---a~~la~~~~~ 172 (322)
T 1omo_A 112 AGGIAAKYLAR--KNSSVFGFIGCGTQAYFQLEALRRV----FD------IGEVKAYDVR----EKA---AKKFVSYCED 172 (322)
T ss_dssp HHHHHHHHHSC--TTCCEEEEECCSHHHHHHHHHHHHH----SC------CCEEEEECSS----HHH---HHHHHHHHHH
T ss_pred HHHHHHHhccC--CCCCEEEEEcCcHHHHHHHHHHHHh----CC------ccEEEEECCC----HHH---HHHHHHHHHh
Confidence 34555555532 3567999999999999988877653 23 2678888873 221 2222223321
Q ss_pred ---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcC--CCCCCCCCCHHH
Q 011816 396 ---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS--NPTSQSECTAEE 458 (477)
Q Consensus 396 ---~~~~~~~L~eav~~vkptvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLS--NPt~~~E~tpe~ 458 (477)
... ..++.|++ . +|++|=++..+ -.|+.+++ .+.-.|+.++ +|. +-|+.++-
T Consensus 173 ~~~~~~-~~~~~e~v-~--aDvVi~aTp~~~pv~~~~~l------~~G~~V~~ig~~~p~-~~el~~~~ 230 (322)
T 1omo_A 173 RGISAS-VQPAEEAS-R--CDVLVTTTPSRKPVVKAEWV------EEGTHINAIGADGPG-KQELDVEI 230 (322)
T ss_dssp TTCCEE-ECCHHHHT-S--SSEEEECCCCSSCCBCGGGC------CTTCEEEECSCCSTT-CCCBCHHH
T ss_pred cCceEE-ECCHHHHh-C--CCEEEEeeCCCCceecHHHc------CCCeEEEECCCCCCC-ccccCHHH
Confidence 112 46899999 5 99998766532 23443322 3566899883 455 67887653
No 139
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=89.45 E-value=0.73 Score=46.35 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=59.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCccc----CCCC--CCCchhchhhccccCCCCCHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV----SSRK--DSLQHFKKPWAHEHEPVNNLL 404 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~----~~r~--~~l~~~k~~~a~~~~~~~~L~ 404 (477)
..||.|+|+|+-|.++|..|... | .+++++|++--.. ..+. ..++..+ +.....-..++.
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~-----G-------~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~--l~~~i~~t~d~~ 94 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK-----G-------QKVRLWSYESDHVDEMQAEGVNNRYLPNYP--FPETLKAYCDLK 94 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT-----T-------CCEEEECSCHHHHHHHHHHSSBTTTBTTCC--CCTTEEEESCHH
T ss_pred CCeEEEECccHHHHHHHHHHHHC-----C-------CeEEEEeCCHHHHHHHHHcCCCcccCCCCc--cCCCeEEECCHH
Confidence 46899999999999999998753 4 3577777741100 0000 0011110 000000124788
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCCC
Q 011816 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 450 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 450 (477)
|+++. +|++| ++.+. .+.+++++.++.+. +..+|..++|...
T Consensus 95 ea~~~--aDvVi-laVp~-~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 95 ASLEG--VTDIL-IVVPS-FAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp HHHTT--CCEEE-ECCCH-HHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred HHHhc--CCEEE-ECCCH-HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 88876 78777 44333 46778888877544 4567778888653
No 140
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=89.44 E-value=0.28 Score=51.18 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHc-CCCcee--ccCCCchHHHHHHHHHHHHHHhC--------CCC
Q 011816 261 LLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG-TTHLVF--NDDIQGTASVVLAGVVAALKLIG--------GTL 329 (477)
Q Consensus 261 ~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr-~~~~~F--nDDiQGTaaV~LAgll~Alr~~g--------~~l 329 (477)
.+..+++.+...+ ++ |.|+-+......++-++|. ..+|++ |+..-+.+.....-|+..+.... ..-
T Consensus 134 ~~~~~l~~~a~~~-~~--v~~~~vd~~~~~~~~~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~ 210 (521)
T 1hyu_A 134 DVVQALNLMAVLN-PR--IKHTAIDGGTFQNEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKR 210 (521)
T ss_dssp HHHHHHHHHHHHC-TT--EEEEEEETTTCHHHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHCCSSCCHHHHHHHTS
T ss_pred HHHHHHHHHHhHc-Cc--eEEEEEechhhHHHHHHhCCCccCEEEECCEEEecCCCCHHHHHHHHhhccccccccccccc
Confidence 3566666666677 43 5555444445567888886 467754 55555666666666666543321 012
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|||+|||.||+..|..+.. .|+ ++.++|++
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~-----~G~-------~v~lie~~ 244 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSAR-----KGI-------RTGLMGER 244 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred CcccEEEECCcHHHHHHHHHHHh-----CCC-------eEEEEECC
Confidence 34679999999999999998765 254 56677753
No 141
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=89.41 E-value=0.59 Score=45.53 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=58.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC--------cccCCCCCCCchhchhhccccCCCCCH
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG--------LIVSSRKDSLQHFKKPWAHEHEPVNNL 403 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G--------Li~~~r~~~l~~~k~~~a~~~~~~~~L 403 (477)
.||.|+|+|+-|..+|..|.++ | .++.++|+.- +...++. ...++ + ....-..++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-----g-------~~V~~~~r~~~~~i~~~Gl~~~~~~--~g~~~--~-~~~~~~~~~ 65 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT-----G-------HCVSVVSRSDYETVKAKGIRIRSAT--LGDYT--F-RPAAVVRSA 65 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT-----T-------CEEEEECSTTHHHHHHHCEEEEETT--TCCEE--E-CCSCEESCG
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEeCChHHHHHhCCcEEeecC--CCcEE--E-eeeeeECCH
Confidence 5899999999999999988653 4 3788888753 1111100 00000 0 000011355
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCCC
Q 011816 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 450 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 450 (477)
.++.+ .+|++| ++... ..++++++.++.+- +..+|+.+.|-..
T Consensus 66 ~~~~~--~~DlVi-lavK~-~~~~~~l~~l~~~l~~~t~Iv~~~nGi~ 109 (320)
T 3i83_A 66 AELET--KPDCTL-LCIKV-VEGADRVGLLRDAVAPDTGIVLISNGID 109 (320)
T ss_dssp GGCSS--CCSEEE-ECCCC-CTTCCHHHHHTTSCCTTCEEEEECSSSS
T ss_pred HHcCC--CCCEEE-EecCC-CChHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 55543 378877 55544 34668888887543 4567778889764
No 142
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=89.26 E-value=0.4 Score=47.57 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=34.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=
T Consensus 32 ~kL~~~~VlVvGaGGlGs~va~~La~a-----GV------G~i~lvD~D~ 70 (292)
T 3h8v_A 32 EKIRTFAVAIVGVGGVGSVTAEMLTRC-----GI------GKLLLFDYDK 70 (292)
T ss_dssp CGGGGCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCCB
T ss_pred HHHhCCeEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCc
Confidence 578999999999999999999999876 65 6999999863
No 143
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=89.14 E-value=3.9 Score=40.66 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=76.2
Q ss_pred cCCCceeccCCCch---HHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHH
Q 011816 297 GTTHLVFNDDIQGT---ASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (477)
Q Consensus 297 r~~~~~FnDDiQGT---aaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~ 355 (477)
+..|+|.|---..+ |=-+++.+|+..|- .+..|.+.++.|+|.|..|..+|+.+..
T Consensus 91 ~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~--- 167 (333)
T 1j4a_A 91 ELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEG--- 167 (333)
T ss_dssp HTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHH---
T ss_pred hCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHHHHHHHHH---
Confidence 35677777543333 44478888887762 2356889999999999999999998864
Q ss_pred hhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 011816 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 431 (477)
Q Consensus 356 ~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~ 431 (477)
.|+ +++.+|+.. . . . . ..++. ...+|.|+++. .|+++=.-. ..++++++.++
T Consensus 168 --~G~-------~V~~~d~~~----~--~-~--~-~~~~~---~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~l~ 223 (333)
T 1j4a_A 168 --FGA-------KVITYDIFR----N--P-E--L-EKKGY---YVDSLDDLYKQ--ADVISLHVPDVPANVHMINDESIA 223 (333)
T ss_dssp --TTC-------EEEEECSSC----C--H-H--H-HHTTC---BCSCHHHHHHH--CSEEEECSCCCGGGTTCBSHHHHH
T ss_pred --CCC-------EEEEECCCc----c--h-h--H-HhhCe---ecCCHHHHHhh--CCEEEEcCCCcHHHHHHHhHHHHh
Confidence 264 688888742 1 0 0 1 11111 11367777765 777764321 12467777777
Q ss_pred HHHcCCCCcEEEEcCC
Q 011816 432 AMASFNEKPLILALSN 447 (477)
Q Consensus 432 ~Ma~~~erPIIFaLSN 447 (477)
.|. +..++.-.|.
T Consensus 224 ~mk---~ga~lIn~ar 236 (333)
T 1j4a_A 224 KMK---QDVVIVNVSR 236 (333)
T ss_dssp HSC---TTEEEEECSC
T ss_pred hCC---CCcEEEECCC
Confidence 775 4566666665
No 144
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=88.94 E-value=1.6 Score=44.25 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=55.0
Q ss_pred eeeecCCcccH-HHHHHHHcCCCceeccCC---CchHHHHHHHHHHHHHH--------------------hCCCCccceE
Q 011816 279 IQFEDFANHNA-FELLAKYGTTHLVFNDDI---QGTASVVLAGVVAALKL--------------------IGGTLAEHRF 334 (477)
Q Consensus 279 Iq~EDf~~~~a-f~iL~ryr~~~~~FnDDi---QGTaaV~LAgll~Alr~--------------------~g~~l~d~ri 334 (477)
|+.-..+..|- .+...+.+..|.|.|--- ..+|=-+++.+|+..|- .+..|.+.+|
T Consensus 88 I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tv 167 (364)
T 2j6i_A 88 VVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTI 167 (364)
T ss_dssp EEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEE
T ss_pred EEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEE
Confidence 55555554442 222233223566666432 23344478888887662 3668999999
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 335 v~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+|.|..|..+|+.+.. .|+ ++++.+|+.
T Consensus 168 gIIG~G~IG~~vA~~l~~-----~G~------~~V~~~d~~ 197 (364)
T 2j6i_A 168 ATIGAGRIGYRVLERLVP-----FNP------KELLYYDYQ 197 (364)
T ss_dssp EEECCSHHHHHHHHHHGG-----GCC------SEEEEECSS
T ss_pred EEECcCHHHHHHHHHHHh-----CCC------cEEEEECCC
Confidence 999999999999998753 254 238888864
No 145
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Probab=88.93 E-value=0.49 Score=46.52 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=74.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc--CC-cccCCCCCCCchhchhhccccCCC----CCHH
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KG-LIVSSRKDSLQHFKKPWAHEHEPV----NNLL 404 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~--~G-Li~~~r~~~l~~~k~~~a~~~~~~----~~L~ 404 (477)
||+|.|| |..|..++..|+. .|+ ...+.|+|. +- .+.....+ +.+. .++....-.. .++.
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~-----~~~-----~~el~L~Di~~~~~~~~~~~~d-l~~~-~~~~~~~~~i~~~~d~l~ 69 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAK-----EPF-----MKDLVLIGREHSINKLEGLRED-IYDA-LAGTRSDANIYVESDENL 69 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHT-----CTT-----CCEEEEEECGGGHHHHHHHHHH-HHHH-HTTSCCCCEEEEEETTCG
T ss_pred EEEEECCCChhHHHHHHHHHh-----CCC-----CCEEEEEcCCCchhhhHHHHHH-HHHh-HHhcCCCeEEEeCCcchH
Confidence 8999999 9999998888753 243 246899996 21 00000000 2111 1222100011 1378
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc--CCcEE
Q 011816 405 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KVQTI 468 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t--~G~ai 468 (477)
+++++ +|++|=+.+.+ |. .+++++++|.+++ +.+|+--|||. ....+-+++.+ .-.-+
T Consensus 70 ~al~g--aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv---~~~t~~~~k~~~~p~~rv 143 (313)
T 1hye_A 70 RIIDE--SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPV---DVMTYKALVDSKFERNQV 143 (313)
T ss_dssp GGGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSH---HHHHHHHHHHHCCCTTSE
T ss_pred HHhCC--CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcH---HHHHHHHHHhhCcChhcE
Confidence 88987 99998776654 21 4668889999999 99999999998 44455555542 12346
Q ss_pred EEcC
Q 011816 469 ILQH 472 (477)
Q Consensus 469 fAsG 472 (477)
|++|
T Consensus 144 iG~g 147 (313)
T 1hye_A 144 FGLG 147 (313)
T ss_dssp EECT
T ss_pred EEeC
Confidence 7765
No 146
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=88.93 E-value=0.95 Score=45.37 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=47.1
Q ss_pred CCceeccCC-C--chHHHHHHHHHHHHHH----------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCC
Q 011816 299 THLVFNDDI-Q--GTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTK 359 (477)
Q Consensus 299 ~~~~FnDDi-Q--GTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G 359 (477)
.|+|.|--- . .+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|..+|+.+... |
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G 163 (324)
T 3hg7_A 89 DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHF-----G 163 (324)
T ss_dssp SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHT-----T
T ss_pred CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhC-----C
Confidence 455555422 1 2344567777776652 35679999999999999999999998643 6
Q ss_pred CChhhhcCeEEEEccCC
Q 011816 360 APVEETRKKICLVDSKG 376 (477)
Q Consensus 360 ~~~eeA~~~i~lvD~~G 376 (477)
+ +++.+|+..
T Consensus 164 ~-------~V~~~dr~~ 173 (324)
T 3hg7_A 164 M-------KVLGVSRSG 173 (324)
T ss_dssp C-------EEEEECSSC
T ss_pred C-------EEEEEcCCh
Confidence 4 688888764
No 147
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=88.88 E-value=1.3 Score=44.34 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=48.2
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHh
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (477)
..|+|.|--- +.+|=-+++.+|+..|- .+..|.+.++.|+|.|..|-.+|+.+..
T Consensus 83 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~vA~~l~~---- 158 (324)
T 3evt_A 83 AGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASA---- 158 (324)
T ss_dssp TTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHHHHHHHH----
T ss_pred CCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHHHHHHHh----
Confidence 4677777543 23344567777776642 2667999999999999999999999864
Q ss_pred hCCCChhhhcCeEEEEccC
Q 011816 357 QTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+ +++.+|+.
T Consensus 159 -~G~-------~V~~~dr~ 169 (324)
T 3evt_A 159 -LGM-------HVIGVNTT 169 (324)
T ss_dssp -TTC-------EEEEEESS
T ss_pred -CCC-------EEEEECCC
Confidence 265 68888875
No 148
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=88.82 E-value=4.3 Score=40.90 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=76.6
Q ss_pred CCceeccCCCc---hHHHHHHHHHHHHHH----------h----------CCCCccceEEEeCcchHHHHHHHHHHHHHH
Q 011816 299 THLVFNDDIQG---TASVVLAGVVAALKL----------I----------GGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (477)
Q Consensus 299 ~~~~FnDDiQG---TaaV~LAgll~Alr~----------~----------g~~l~d~riv~~GAGsAg~Gia~ll~~~~~ 355 (477)
.|+|.|----. +|=-+++-+|+..|- . +..|.+.++.|+|.|..|..+|+.+...
T Consensus 93 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~-- 170 (343)
T 2yq5_A 93 NLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAM-- 170 (343)
T ss_dssp -CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHT--
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHHHHHHHHHhhC--
Confidence 67777764333 444568888877651 2 3467899999999999999999998642
Q ss_pred hhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 011816 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 431 (477)
Q Consensus 356 ~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~----~~g~Ft~evv~ 431 (477)
|+ +++.+|+..- .... ..+. ..+|.|+++. .|+++=.-- ..++|+++.++
T Consensus 171 ---G~-------~V~~~d~~~~------~~~~----~~~~----~~~l~ell~~--aDvV~l~~Plt~~t~~li~~~~l~ 224 (343)
T 2yq5_A 171 ---GA-------KVIAYDVAYN------PEFE----PFLT----YTDFDTVLKE--ADIVSLHTPLFPSTENMIGEKQLK 224 (343)
T ss_dssp ---TC-------EEEEECSSCC------GGGT----TTCE----ECCHHHHHHH--CSEEEECCCCCTTTTTCBCHHHHH
T ss_pred ---CC-------EEEEECCChh------hhhh----cccc----ccCHHHHHhc--CCEEEEcCCCCHHHHHHhhHHHHh
Confidence 64 6888887521 0010 0111 1268888876 788774422 23578888888
Q ss_pred HHHcCCCCcEEEEcCC
Q 011816 432 AMASFNEKPLILALSN 447 (477)
Q Consensus 432 ~Ma~~~erPIIFaLSN 447 (477)
.|. +..++.=.|.
T Consensus 225 ~mk---~gailIN~aR 237 (343)
T 2yq5_A 225 EMK---KSAYLINCAR 237 (343)
T ss_dssp HSC---TTCEEEECSC
T ss_pred hCC---CCcEEEECCC
Confidence 885 5667766654
No 149
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=88.68 E-value=1.5 Score=44.29 Aligned_cols=96 Identities=9% Similarity=0.213 Sum_probs=61.7
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHHHh
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAV 407 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~eav 407 (477)
++..||.|+|.|..|..+|..|... | -+++++|+. . +.. +.++.. .....++.|++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~-----G-------~~V~v~dr~----~---~~~----~~l~~~g~~~~~s~~e~~ 76 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKG-----G-------HECVVYDLN----V---NAV----QALEREGIAGARSIEEFC 76 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSC----H---HHH----HHHHTTTCBCCSSHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhC-----C-------CEEEEEeCC----H---HHH----HHHHHCCCEEeCCHHHHH
Confidence 3467999999999999999998763 5 367777763 1 111 122221 12236788988
Q ss_pred ccc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 011816 408 KVI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (477)
Q Consensus 408 ~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (477)
+.. +||++| ++...+ -.+++++.+... .+..||.-+||-.
T Consensus 77 ~~a~~~DvVi-~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 77 AKLVKPRVVW-LMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp HHSCSSCEEE-ECSCGG-GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred hcCCCCCEEE-EeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 873 568877 343344 677888887654 3567888787643
No 150
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=88.46 E-value=0.28 Score=49.87 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=33.5
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+|++.||+|+|||..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 31 kL~~~~VlIvGaGGlGs~va~~La~a-----GV------g~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHT-----TC------CEEEEECCCB
T ss_pred HHhCCEEEEECCCHHHHHHHHHHHHc-----CC------CEEEEecCCE
Confidence 57789999999999999999999875 75 6999999863
No 151
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=88.29 E-value=3 Score=41.06 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHh----------------CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEc
Q 011816 310 TASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (477)
Q Consensus 310 TaaV~LAgll~Alr~~----------------g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (477)
+|=-+++-+|+..|-. ...|.+.+|.|+|.|..|..+|+.+... |+ +++.+|
T Consensus 85 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G~-------~V~~~d 152 (290)
T 3gvx_A 85 VAEHAFALLLAHAKNILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAF-----GM-------RVIAYT 152 (290)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEEC
T ss_pred HHHHHHHHHHHHHHhhhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhh-----Cc-------EEEEEe
Confidence 3445666666665521 1458899999999999999999998753 64 688888
Q ss_pred cC
Q 011816 374 SK 375 (477)
Q Consensus 374 ~~ 375 (477)
+.
T Consensus 153 r~ 154 (290)
T 3gvx_A 153 RS 154 (290)
T ss_dssp SS
T ss_pred cc
Confidence 75
No 152
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B
Probab=88.29 E-value=3.6 Score=41.12 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=31.7
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
|..|.+.+|.|+|.|..|..+|+.+..+ .|+ +++.+|+.
T Consensus 158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~----~G~-------~V~~~d~~ 196 (348)
T 2w2k_A 158 AHNPRGHVLGAVGLGAIQKEIARKAVHG----LGM-------KLVYYDVA 196 (348)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHT----TCC-------EEEEECSS
T ss_pred CcCCCCCEEEEEEECHHHHHHHHHHHHh----cCC-------EEEEECCC
Confidence 5678999999999999999999988622 364 68888874
No 153
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=88.29 E-value=0.6 Score=46.43 Aligned_cols=108 Identities=8% Similarity=0.154 Sum_probs=61.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch-----hhccc------cCCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-----PWAHE------HEPV 400 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-----~~a~~------~~~~ 400 (477)
.||.|+|+|..|.++|..|..+-... . .-..+++++|+..-+. .+. .....++ .|-.. ....
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~----~-~~~~~V~~~~r~~~~~-~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~ 94 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNN----Y-LFENEVRMWIRDEFVN-GER-MVDIINNKHENTKYLKGVPLPHNIVAH 94 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHC----T-TBCSCEEEECCSCC----CC-HHHHHHHHCBCTTTSTTCBCCTTEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcc----C-CCCCeEEEEECChhhh-hHH-HHHHHHhcCcccccCCcccCcCCeEEE
Confidence 48999999999999999997652100 0 0004688888753210 000 0111100 01000 0012
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHc----C-CCCcEEEEcCCCCC
Q 011816 401 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS----F-NEKPLILALSNPTS 450 (477)
Q Consensus 401 ~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~----~-~erPIIFaLSNPt~ 450 (477)
.++.|+++. +|++| ++... ...+++++.++. . .+..+|..++|-.+
T Consensus 95 ~~~~ea~~~--aDvVi-lav~~-~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~ 145 (375)
T 1yj8_A 95 SDLASVIND--ADLLI-FIVPC-QYLESVLASIKESESIKIASHAKAISLTKGFI 145 (375)
T ss_dssp SSTHHHHTT--CSEEE-ECCCH-HHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred CCHHHHHcC--CCEEE-EcCCH-HHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence 467888876 88777 33333 567888888875 3 34668888998653
No 154
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=88.15 E-value=0.53 Score=46.65 Aligned_cols=116 Identities=19% Similarity=0.238 Sum_probs=71.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCC--CCHHHHhcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~--~~L~eav~~ 409 (477)
.||.|+|||..|..+|-+|... |+ ...+.|+|..-=...+-.-+|.+. .+|....... .+-.+++++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~-----~~-----~~el~L~Di~~~~~~G~a~DL~h~-~~~~~~~~~i~~~~d~~~~~~ 69 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN-----LD-----VDEIALVDIAEDLAVGEAMDLAHA-AAGIDKYPKIVGGADYSLLKG 69 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----SC-----CSEEEEECSSHHHHHHHHHHHHHH-HGGGTCCCEEEEESCGGGGTT
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCCCcchhhhhhhhcc-cccCCCCCeEecCCCHHHhCC
Confidence 3899999999999999888652 54 257999997421111110013221 1222111111 223456776
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
+|++|=+.+.+ |- +-+++++.+++++++.||+-.|||. ..+..-+++.+
T Consensus 70 --aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPv---d~~t~i~~k~s 132 (294)
T 2x0j_A 70 --SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM---DVMTYIMWKES 132 (294)
T ss_dssp --CSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH---HHHHHHHHHHS
T ss_pred --CCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcc---hhhHHhhHHHc
Confidence 99998666654 31 1246788888999999999999997 45555566543
No 155
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=87.96 E-value=1.6 Score=38.04 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=59.8
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhc
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVK 408 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~ 408 (477)
..+|+|.|| |-.|..+++.|++ .| .++++++++.- +...+......+.. +..+..++.++++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~-----~g-------~~V~~~~r~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 66 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQ-----AG-------YEVTVLVRDSS----RLPSEGPRPAHVVVGDVLQAADVDKTVA 66 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHH-----TT-------CEEEEEESCGG----GSCSSSCCCSEEEESCTTSHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHH-----CC-------CeEEEEEeChh----hcccccCCceEEEEecCCCHHHHHHHHc
Confidence 368999998 8888888888865 24 36888887521 10111011111111 1122245778887
Q ss_pred ccCCcEEEeccCCCCC---------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 409 VIKPTILIGSSGVGRT---------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~---------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
. +|++|=+.+.... .+..++++|.+..-+.|||.=|
T Consensus 67 ~--~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss 111 (206)
T 1hdo_A 67 G--QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (206)
T ss_dssp T--CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred C--CCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 6 8999988775431 2567888887666667888544
No 156
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=87.89 E-value=0.96 Score=42.25 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=56.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc---hhhccccCCCCCHHHHhcc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK---KPWAHEHEPVNNLLDAVKV 409 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k---~~~a~~~~~~~~L~eav~~ 409 (477)
||.|+|+|..|..+|..|... | .+++++|+.- .+.+.+.... ..+-.. -.. +..++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-----g-------~~V~~~~r~~----~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~ 63 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQ-----G-------HEVQGWLRVP----QPYCSVNLVETDGSIFNES-LTA-NDPDFLAT 63 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSC----CSEEEEEEECTTSCEEEEE-EEE-SCHHHHHT
T ss_pred eEEEECcCHHHHHHHHHHHhC-----C-------CCEEEEEcCc----cceeeEEEEcCCCceeeee-eee-cCccccCC
Confidence 799999999999999998753 4 3788888742 1111111100 000000 001 22466765
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 410 IKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 410 vkptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
+|++| ++.... -.+++++.++.+. +..+|..++|..
T Consensus 64 --~d~vi-~~v~~~-~~~~v~~~l~~~l~~~~~vv~~~~g~ 100 (291)
T 1ks9_A 64 --SDLLL-VTLKAW-QVSDAVKSLASTLPVTTPILLIHNGM 100 (291)
T ss_dssp --CSEEE-ECSCGG-GHHHHHHHHHTTSCTTSCEEEECSSS
T ss_pred --CCEEE-EEecHH-hHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 89887 343332 3588998887643 456777788865
No 157
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=87.83 E-value=3 Score=41.68 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=79.5
Q ss_pred CCceeccCCC---chHHHHHHHHHHHHHH-------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHh
Q 011816 299 THLVFNDDIQ---GTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (477)
Q Consensus 299 ~~~~FnDDiQ---GTaaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (477)
.|+|.|=--- .+|=-+++-+|+..|- .|..|.+.++.|+|.|..|-.+|+.+...
T Consensus 87 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~--- 163 (334)
T 2pi1_A 87 GILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAF--- 163 (334)
T ss_dssp TCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHT---
T ss_pred CeEEEECCCcCcHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCccccCccceeccCceEEEECcCHHHHHHHHHHHHC---
Confidence 4555554222 3445567777777652 35678999999999999999999998642
Q ss_pred hCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 011816 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 432 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~ 432 (477)
|+ +++.+|+.. + .... ...-...+|.|+++. .|+++=.- ...+.|+++.++.
T Consensus 164 --G~-------~V~~~d~~~-------~--~~~~----~~g~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l~~ 219 (334)
T 2pi1_A 164 --GM-------KVLCYDVVK-------R--EDLK----EKGCVYTSLDELLKE--SDVISLHVPYTKETHHMINEERISL 219 (334)
T ss_dssp --TC-------EEEEECSSC-------C--HHHH----HTTCEECCHHHHHHH--CSEEEECCCCCTTTTTCBCHHHHHH
T ss_pred --cC-------EEEEECCCc-------c--hhhH----hcCceecCHHHHHhh--CCEEEEeCCCChHHHHhhCHHHHhh
Confidence 64 688888742 1 0000 001112358898887 89887431 2346899999999
Q ss_pred HHcCCCCcEEEEcCCCC
Q 011816 433 MASFNEKPLILALSNPT 449 (477)
Q Consensus 433 Ma~~~erPIIFaLSNPt 449 (477)
|. +..|+.=.|.-.
T Consensus 220 mk---~gailIN~aRg~ 233 (334)
T 2pi1_A 220 MK---DGVYLINTARGK 233 (334)
T ss_dssp SC---TTEEEEECSCGG
T ss_pred CC---CCcEEEECCCCc
Confidence 95 677887777643
No 158
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=87.50 E-value=0.39 Score=45.78 Aligned_cols=103 Identities=16% Similarity=0.249 Sum_probs=60.2
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCC--CC-----CCCchhch-----hhcc
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKK-----PWAH 395 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~--r~-----~~l~~~k~-----~~a~ 395 (477)
+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+-+=.++ |. +++-..|. .+.+
T Consensus 28 ~l~~~~VlVvG~Gg~G~~va~~La~~-----Gv------~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~ 96 (249)
T 1jw9_B 28 ALKDSRVLIVGLGGLGCAASQYLASA-----GV------GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTR 96 (249)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred HHhCCeEEEEeeCHHHHHHHHHHHHc-----CC------CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHH
Confidence 45678999999999999999999875 65 689999987421110 00 00111111 1111
Q ss_pred c---------cCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 011816 396 E---------HEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 396 ~---------~~~~--~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 445 (477)
- .... .++.+.++. .|++|.++.. .-+...+-..+.....|+|.+-
T Consensus 97 ~np~~~v~~~~~~~~~~~~~~~~~~--~DvVi~~~d~--~~~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 97 INPHIAITPVNALLDDAELAALIAE--HDLVLDCTDN--VAVRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp HCTTSEEEEECSCCCHHHHHHHHHT--SSEEEECCSS--HHHHHHHHHHHHHHTCCEEEEE
T ss_pred HCCCcEEEEEeccCCHhHHHHHHhC--CCEEEEeCCC--HHHHHHHHHHHHHcCCCEEEee
Confidence 0 0011 135556664 8999977642 2344555555555568887753
No 159
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=87.43 E-value=0.19 Score=48.34 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH-----GF-------AVTAYDIN 36 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5899999999999999998763 64 68888874
No 160
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*
Probab=87.41 E-value=0.38 Score=47.15 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=65.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc---ccCCCCCCCchhchhhccccCCCCCHHHHh
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL---IVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL---i~~~r~~~l~~~k~~~a~~~~~~~~L~eav 407 (477)
.||+|.|| |..|..++..|+. .|.--..-...++++|...- ......+ +.+...+|..+.....++.+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~-----~g~~~~~~~~ev~l~D~~~~~~~~~g~~~d-l~~~~~~~~~di~~~~~~~~a~ 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAA-----GEMLGKDQPVILQLLEIPQAMKALEGVVME-LEDCAFPLLAGLEATDDPKVAF 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHT-----TTTTCTTCCEEEEEECCGGGHHHHHHHHHH-HHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHh-----CCCCCCCCCCEEEEEeCCCchhhccchhhh-hhcccccccCCeEeccChHHHh
Confidence 48999997 9999999988754 24300000137999997420 0000001 1111112322211225688899
Q ss_pred cccCCcEEEeccCCCCC--------------CCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 408 KVIKPTILIGSSGVGRT--------------FTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
++ +|++|=+.+.+.. .|.++++++.+++ .+.+++-.|||.
T Consensus 79 ~~--~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~ 133 (327)
T 1y7t_A 79 KD--ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPA 133 (327)
T ss_dssp TT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred CC--CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Confidence 86 9999977765531 3566788888875 666888899996
No 161
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=87.36 E-value=1.1 Score=42.62 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=27.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~-----g~-----~~~V~~~d~~ 40 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD-----HP-----HYKIVGYNRS 40 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CT-----TSEEEEECSS
T ss_pred cceEEEEeeCHHHHHHHHHHHhC-----CC-----CcEEEEEcCC
Confidence 36899999999999999988753 32 1368888864
No 162
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=87.35 E-value=0.7 Score=44.95 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+..+++-.|.. ...+++|+|||.+|.+++..|.. .|. ++|+++++.
T Consensus 105 ~G~~~~l~~~~~~-~~~~vlvlGaGgaarav~~~L~~-----~G~------~~i~v~nRt 152 (271)
T 1npy_A 105 IAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKN-----SGF------EKLKIYARN 152 (271)
T ss_dssp HHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHH-----TTC------CCEEEECSC
T ss_pred HHHHHHHHHhCCC-CCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 5677777766654 56799999999999999888765 364 579988873
No 163
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=87.27 E-value=1.5 Score=46.12 Aligned_cols=98 Identities=12% Similarity=0.175 Sum_probs=61.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch-hhc-cccCCCCCHHHHhcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWA-HEHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-~~a-~~~~~~~~L~eav~~ 409 (477)
.+|.|+|+|..|.++|..|... |. +++++|+. . +......+ ... .......++.|+++.
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~-----G~-------~V~v~dr~----~---~~~~~l~~~~~~~~gi~~~~s~~e~v~~ 71 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH-----GF-------TVCAYNRT----Q---SKVDHFLANEAKGKSIIGATSIEDFISK 71 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS----S---HHHHHHHHTTTTTSSEECCSSHHHHHHT
T ss_pred CCEEEEeeHHHHHHHHHHHHHC-----CC-------EEEEEeCC----H---HHHHHHHcccccCCCeEEeCCHHHHHhc
Confidence 4899999999999999998763 54 57777763 1 11111111 000 011123578888875
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 410 I-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 410 v-kptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
. +||++| ++.+.+...+++++.+...- +..||.-+||-.
T Consensus 72 l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 72 LKRPRKVM-LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp SCSSCEEE-ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCCCCEEE-EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 3 488777 44444456778888876543 356888888854
No 164
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=87.15 E-value=5.7 Score=39.35 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=76.0
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC
Q 011816 305 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 384 (477)
Q Consensus 305 DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~ 384 (477)
++.++.....++..+.|++..+.+ ..++++|+|||..|...+.+... .|. ++++.+|+.
T Consensus 158 ~~~~aal~~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~aiqlak~-----~Ga------~~Vi~~~~~--------- 216 (370)
T 4ej6_A 158 DPVHGAFCEPLACCLHGVDLSGIK-AGSTVAILGGGVIGLLTVQLARL-----AGA------TTVILSTRQ--------- 216 (370)
T ss_dssp CTTGGGGHHHHHHHHHHHHHHTCC-TTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSC---------
T ss_pred CHHHHhhhhHHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECCC---------
Confidence 344555445666667777665543 46799999999888776655532 364 478877753
Q ss_pred CCchhchhhccc-------cCCCCCHHHHhcc---c---CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC-
Q 011816 385 SLQHFKKPWAHE-------HEPVNNLLDAVKV---I---KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS- 450 (477)
Q Consensus 385 ~l~~~k~~~a~~-------~~~~~~L~eav~~---v---kptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~- 450 (477)
+.+..+++. .....++.+.++. . ++|++|=+++.+ ..-++.++.++. .=-|.-+..+..
T Consensus 217 ---~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~-~~~~~~~~~l~~---~G~vv~~G~~~~~ 289 (370)
T 4ej6_A 217 ---ATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVA-ETVKQSTRLAKA---GGTVVILGVLPQG 289 (370)
T ss_dssp ---HHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCH-HHHHHHHHHEEE---EEEEEECSCCCTT
T ss_pred ---HHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCH-HHHHHHHHHhcc---CCEEEEEeccCCC
Confidence 122233332 1112456666654 1 579998877643 233455666653 223333444332
Q ss_pred -CCCCCHHHHhcccCCcEEEEc
Q 011816 451 -QSECTAEEAYTWSKVQTIILQ 471 (477)
Q Consensus 451 -~~E~tpe~A~~~t~G~aifAs 471 (477)
..+..+.+.+. ++..|..+
T Consensus 290 ~~~~~~~~~~~~--~~~~i~g~ 309 (370)
T 4ej6_A 290 EKVEIEPFDILF--RELRVLGS 309 (370)
T ss_dssp CCCCCCHHHHHH--TTCEEEEC
T ss_pred CccccCHHHHHh--CCcEEEEe
Confidence 35666666543 45555543
No 165
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=87.05 E-value=3 Score=41.25 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=46.4
Q ss_pred CCCceeccCCCc---hHHHHHHHHHHHHHH---------------------hCCCCccceEEEeCcchHHHHHHHHHHHH
Q 011816 298 TTHLVFNDDIQG---TASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 298 ~~~~~FnDDiQG---TaaV~LAgll~Alr~---------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
..|.|.|----. +|=-+++.+|+..|- .+..|.+.+|.|+|.|..|-.+|+.+..
T Consensus 89 ~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~- 167 (320)
T 1gdh_A 89 RGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQG- 167 (320)
T ss_dssp TTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHT-
T ss_pred CCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHH-
Confidence 456666654323 344477888877653 2356889999999999999999998863
Q ss_pred HHhhCCCChhhhcCeEEEEcc
Q 011816 354 ISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 354 ~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.|+ +++.+|+
T Consensus 168 ----~G~-------~V~~~d~ 177 (320)
T 1gdh_A 168 ----FDM-------DIDYFDT 177 (320)
T ss_dssp ----TTC-------EEEEECS
T ss_pred ----CCC-------EEEEECC
Confidence 253 6888887
No 166
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=87.00 E-value=0.64 Score=38.32 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=51.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh----cc-ccCCCCCHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW----AH-EHEPVNNLLD 405 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~----a~-~~~~~~~L~e 405 (477)
+.+|+|+|+|..|..+|+.|.. .| .+++++|++- +.+...+..+ .. +......|.+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~-----~g-------~~v~~~d~~~-------~~~~~~~~~~~~~~~~~d~~~~~~l~~ 64 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE-----KG-------HDIVLIDIDK-------DICKKASAEIDALVINGDCTKIKTLED 64 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEESCH-------HHHHHHHHHCSSEEEESCTTSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEECCH-------HHHHHHHHhcCcEEEEcCCCCHHHHHH
Confidence 3589999999999999998864 24 3688888731 1111111111 11 1011112332
Q ss_pred H-hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 011816 406 A-VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 449 (477)
Q Consensus 406 a-v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 449 (477)
+ ++ ++|++|=+.... ..+..+.+.........||.-.+||.
T Consensus 65 ~~~~--~~d~vi~~~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~ 106 (140)
T 1lss_A 65 AGIE--DADMYIAVTGKE-EVNLMSSLLAKSYGINKTIARISEIE 106 (140)
T ss_dssp TTTT--TCSEEEECCSCH-HHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred cCcc--cCCEEEEeeCCc-hHHHHHHHHHHHcCCCEEEEEecCHh
Confidence 2 33 589988765432 22222333333445567777666665
No 167
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=86.65 E-value=2.3 Score=41.54 Aligned_cols=100 Identities=9% Similarity=0.127 Sum_probs=57.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-CCCCCHHHHhc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVK 408 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~eav~ 408 (477)
+..||.|+|+|..|.++|..|... |.. ...+++++|+. .++ ..+.. +.+.. .-..+..++++
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~-----G~~---~~~~V~v~~r~----~~~-~~~~~----l~~~G~~~~~~~~e~~~ 83 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAA-----GVL---AAHKIMASSPD----MDL-ATVSA----LRKMGVKLTPHNKETVQ 83 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHT-----TSS---CGGGEEEECSC----TTS-HHHHH----HHHHTCEEESCHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CCC---CcceEEEECCC----ccH-HHHHH----HHHcCCEEeCChHHHhc
Confidence 345899999999999999998753 531 11368888763 110 00111 11110 01135677776
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 011816 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (477)
. +|++| ++..+ ...+++++.++.. .+..+|.-++|..+
T Consensus 84 ~--aDvVi-lav~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~ 122 (322)
T 2izz_A 84 H--SDVLF-LAVKP-HIIPFILDEIGADIEDRHIVVSCAAGVT 122 (322)
T ss_dssp H--CSEEE-ECSCG-GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred c--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 5 77666 33333 4566777776543 23557777877764
No 168
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=86.50 E-value=0.44 Score=45.01 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=53.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc---------cCCCCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---------HEPVNN 402 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~---------~~~~~~ 402 (477)
.||.|+|+|..|..+|..|... | .+++++|++.- + +...++.-... .-...+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~-----g-------~~V~~~~r~~~----~---~~~~~~~g~~~~~~~~~~~~~~~~~~ 64 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG-----G-------NDVTLIDQWPA----H---IEAIRKNGLIADFNGEEVVANLPIFS 64 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSCHH----H---HHHHHHHCEEEEETTEEEEECCCEEC
T ss_pred CeEEEECcCHHHHHHHHHHHhC-----C-------CcEEEEECCHH----H---HHHHHhCCEEEEeCCCeeEecceeec
Confidence 4899999999999999988653 4 36888887421 0 11111000000 000012
Q ss_pred HHHHhccc-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 403 LLDAVKVI-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 403 L~eav~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
..|+.+.+ ++|++| ++... -..+++++.++.+- +..+|..++|..
T Consensus 65 ~~~~~~~~~~~d~vi-~~v~~-~~~~~v~~~l~~~l~~~~~iv~~~~g~ 111 (316)
T 2ew2_A 65 PEEIDHQNEQVDLII-ALTKA-QQLDAMFKAIQPMITEKTYVLCLLNGL 111 (316)
T ss_dssp GGGCCTTSCCCSEEE-ECSCH-HHHHHHHHHHGGGCCTTCEEEECCSSS
T ss_pred chhhcccCCCCCEEE-EEecc-ccHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 22322211 378777 33333 24577888776543 456777788865
No 169
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=86.49 E-value=0.63 Score=42.92 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=25.8
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++-...||.|+|+|..|..+|+.+... |. +++++|++
T Consensus 24 ~~~~~~~I~iiG~G~~G~~la~~l~~~-----g~-------~V~~~~r~ 60 (215)
T 2vns_A 24 VPDEAPKVGILGSGDFARSLATRLVGS-----GF-------KVVVGSRN 60 (215)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEESS
T ss_pred CCCCCCEEEEEccCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 333456899999999999999988642 53 57778763
No 170
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=86.45 E-value=0.31 Score=49.07 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=77.2
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc--CCCCCHHH
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLD 405 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~e 405 (477)
+....||.|+|||..|.++|..++.. |+ ...+.|+|.+-=..++-.-+|.+. ..|.... ....+..
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~-----~~-----~~el~L~Di~~~~~~g~a~DL~~~-~~~~~~~~i~~~~d~~- 83 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMK-----DL-----ADELALVDVIEDKLKGEMMDLQHG-SLFLKTPKIVSSKDYS- 83 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSCHHHHHHHHHHHHHT-GGGCSCCEEEECSSGG-
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhC-----CC-----CceEEEEeCChHHHHHHHHhhhhh-hhccCCCeEEEcCCHH-
Confidence 34567999999999999999988652 54 257999997410000000012211 1232211 0123454
Q ss_pred HhcccCCcEEEeccCCC---C-----C------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCC--cEEE
Q 011816 406 AVKVIKPTILIGSSGVG---R-----T------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKV--QTII 469 (477)
Q Consensus 406 av~~vkptvLIG~S~~~---g-----~------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G--~aif 469 (477)
++++ +|++|=+.+.+ | + +-+++.+.|+++++..+|+-.|||. .+..+-+++.+.= +-+|
T Consensus 84 ~~~~--aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPv---di~t~~~~k~sg~p~~rvi 158 (331)
T 4aj2_A 84 VTAN--SKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPV---DILTYVAWKISGFPKNRVI 158 (331)
T ss_dssp GGTT--EEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH---HHHHHHHHHHHCCCGGGEE
T ss_pred HhCC--CCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHHhCCCHHHEE
Confidence 5776 99887444433 3 1 2257788889999999999999998 4556666665421 3466
Q ss_pred EcC
Q 011816 470 LQH 472 (477)
Q Consensus 470 AsG 472 (477)
++|
T Consensus 159 G~g 161 (331)
T 4aj2_A 159 GSG 161 (331)
T ss_dssp ECT
T ss_pred eec
Confidence 765
No 171
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=86.37 E-value=1.2 Score=42.28 Aligned_cols=91 Identities=13% Similarity=0.210 Sum_probs=54.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
.||.|+|+ |..|..+|..+.. .|. +++++|+.- +.+...+. + .-...++.++++.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~-----~g~-------~V~~~~r~~-------~~~~~~~~-~---g~~~~~~~~~~~~- 67 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD-----SAH-------HLAAIEIAP-------EGRDRLQG-M---GIPLTDGDGWIDE- 67 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-----SSS-------EEEEECCSH-------HHHHHHHH-T---TCCCCCSSGGGGT-
T ss_pred CEEEEECCCCHHHHHHHHHHHh-----CCC-------EEEEEECCH-------HHHHHHHh-c---CCCcCCHHHHhcC-
Confidence 48999999 9999999999865 252 688887631 11111111 0 0111255666665
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (477)
+|++| ++..+.. .+++++.+... .+..||.-+|+..
T Consensus 68 -aDvVi-~av~~~~-~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 68 -ADVVV-LALPDNI-IEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp -CSEEE-ECSCHHH-HHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred -CCEEE-EcCCchH-HHHHHHHHHHhCCCCCEEEECCCCc
Confidence 78777 3333323 57777777643 3355666677743
No 172
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=86.37 E-value=0.82 Score=45.82 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=25.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
-.||.|+|||..|.|||..++.+ |+ ++.++|.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~-----G~-------~V~l~D~ 37 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG-----GF-------RVKLYDI 37 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECS
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 36899999999999999988764 65 5777774
No 173
>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}
Probab=86.29 E-value=0.97 Score=46.63 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=50.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChh-hhcCeEEEEccCC-------cccCCCCC--CCchhchhhccccCCCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVE-ETRKKICLVDSKG-------LIVSSRKD--SLQHFKKPWAHEHEPVN 401 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~e-eA~~~i~lvD~~G-------Li~~~r~~--~l~~~k~~~a~~~~~~~ 401 (477)
.||.|+|||+=|+++|..|.+.-.. .+.- +-.=.+|..|..= .|...|.+ .|+..+.| ..-.-..
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~---~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp--~~i~~t~ 109 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKG---YPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLP--DNLVANP 109 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH---CTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCC--SSEEEES
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCC---ccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCC--CCcEEeC
Confidence 4999999999999999999875211 1000 0012567655431 12222211 12222111 0001125
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcC
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 436 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~ 436 (477)
+|.++++. +|++|= +. |-.|-+++++.+..+
T Consensus 110 dl~~al~~--ad~ii~-av-Ps~~~r~~l~~l~~~ 140 (391)
T 4fgw_A 110 DLIDSVKD--VDIIVF-NI-PHQFLPRICSQLKGH 140 (391)
T ss_dssp CHHHHHTT--CSEEEE-CS-CGGGHHHHHHHHTTT
T ss_pred CHHHHHhc--CCEEEE-EC-ChhhhHHHHHHhccc
Confidence 78888887 776652 22 225677777777654
No 174
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.22 E-value=0.24 Score=43.89 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=53.1
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHH-
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA- 406 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~ea- 406 (477)
+.+.+|+|+|+|..|..+|+.|... .| .+++++|++- ++.+.+......... +..+...|.++
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~----~g-------~~V~vid~~~----~~~~~~~~~g~~~~~gd~~~~~~l~~~~ 101 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRAR----YG-------KISLGIEIRE----EAAQQHRSEGRNVISGDATDPDFWERIL 101 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHH----HC-------SCEEEEESCH----HHHHHHHHTTCCEEECCTTCHHHHHTBC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhc----cC-------CeEEEEECCH----HHHHHHHHCCCCEEEcCCCCHHHHHhcc
Confidence 5567899999999999999988642 04 3688888741 110101100000000 10111124443
Q ss_pred -hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 407 -VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 407 -v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
++ ++|++|=++... .-+..++....+.++...|++.+|
T Consensus 102 ~~~--~ad~vi~~~~~~-~~~~~~~~~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 102 DTG--HVKLVLLAMPHH-QGNQTALEQLQRRNYKGQIAAIAE 140 (183)
T ss_dssp SCC--CCCEEEECCSSH-HHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCC--CCCEEEEeCCCh-HHHHHHHHHHHHHCCCCEEEEEEC
Confidence 33 489998655432 334455555555554455555554
No 175
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=86.20 E-value=0.32 Score=43.82 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=58.4
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc---c--ccCCCCCHHHH
Q 011816 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---H--EHEPVNNLLDA 406 (477)
Q Consensus 333 riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a---~--~~~~~~~L~ea 406 (477)
||+|+| +|..|..+|..+.. .| .+++++|++- ++ ....++.+. . +.. ..++.++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~-----~g-------~~V~~~~r~~----~~---~~~~~~~~~~~~~~~~~~-~~~~~~~ 61 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLAT-----LG-------HEIVVGSRRE----EK---AEAKAAEYRRIAGDASIT-GMKNEDA 61 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHT-----TT-------CEEEEEESSH----HH---HHHHHHHHHHHHSSCCEE-EEEHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHH-----CC-------CEEEEEeCCH----HH---HHHHHHHhccccccCCCC-hhhHHHH
Confidence 799999 99999999998864 24 2688888631 11 111111111 0 011 2468888
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 011816 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 450 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 450 (477)
++. +|++|=+.. + -..+++++.+.+..+..+|.-++|+.+
T Consensus 62 ~~~--~D~Vi~~~~-~-~~~~~~~~~l~~~~~~~~vi~~~~g~~ 101 (212)
T 1jay_A 62 AEA--CDIAVLTIP-W-EHAIDTARDLKNILREKIVVSPLVPVS 101 (212)
T ss_dssp HHH--CSEEEECSC-H-HHHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred Hhc--CCEEEEeCC-h-hhHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 886 899884433 3 235677776654334678889999764
No 176
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=86.16 E-value=3 Score=42.89 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=31.1
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..|.+.++.|+|.|..|..+|+.+.. .|+ +++.+|+.
T Consensus 186 ~~~l~gktvGIIGlG~IG~~vA~~l~a-----~G~-------~V~~~d~~ 223 (393)
T 2nac_A 186 AYDLEAMHVGTVAAGRIGLAVLRRLAP-----FDV-------HLHYTDRH 223 (393)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHGG-----GTC-------EEEEECSS
T ss_pred CccCCCCEEEEEeECHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 567999999999999999999998753 253 68888864
No 177
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=86.13 E-value=3.3 Score=41.46 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=70.5
Q ss_pred CCceeccCCC---chHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhh
Q 011816 299 THLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 357 (477)
Q Consensus 299 ~~~~FnDDiQ---GTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~ 357 (477)
.|+|.|---- .+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|..+|+.+..
T Consensus 112 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~----- 186 (335)
T 2g76_A 112 GILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQS----- 186 (335)
T ss_dssp TCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHHHHHT-----
T ss_pred CeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHHHHHHHHHHHH-----
Confidence 5666665322 2344567778877664 2567999999999999999999998753
Q ss_pred CCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 011816 358 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 432 (477)
Q Consensus 358 ~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv~~ 432 (477)
.|+ +++.+|+.. . .. .+.. .-...+|.|+++. .|+++=.- ...++|+++.++.
T Consensus 187 ~G~-------~V~~~d~~~-------~---~~---~~~~~g~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l~~ 244 (335)
T 2g76_A 187 FGM-------KTIGYDPII-------S---PE---VSASFGVQQLPLEEIWPL--CDFITVHTPLLPSTTGLLNDNTFAQ 244 (335)
T ss_dssp TTC-------EEEEECSSS-------C---HH---HHHHTTCEECCHHHHGGG--CSEEEECCCCCTTTTTSBCHHHHTT
T ss_pred CCC-------EEEEECCCc-------c---hh---hhhhcCceeCCHHHHHhc--CCEEEEecCCCHHHHHhhCHHHHhh
Confidence 253 688888641 0 00 0110 0001256666665 66666331 1124566666666
Q ss_pred HHcCCCCcEEEEcCC
Q 011816 433 MASFNEKPLILALSN 447 (477)
Q Consensus 433 Ma~~~erPIIFaLSN 447 (477)
|. +..++.=.|.
T Consensus 245 mk---~gailIN~ar 256 (335)
T 2g76_A 245 CK---KGVRVVNCAR 256 (335)
T ss_dssp SC---TTEEEEECSC
T ss_pred CC---CCcEEEECCC
Confidence 64 4556655554
No 178
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=86.04 E-value=1.4 Score=43.90 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=47.5
Q ss_pred CCCceeccCC----CchHHHHHHHHHHHHHH----------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHhh
Q 011816 298 TTHLVFNDDI----QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 357 (477)
Q Consensus 298 ~~~~~FnDDi----QGTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~ 357 (477)
..+++.|--- +.+|=-+++.+|+..|- .+..|.+.++.|+|.|..|..+|+.+..
T Consensus 86 ~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~----- 160 (315)
T 3pp8_A 86 ASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQA----- 160 (315)
T ss_dssp TTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHHHHHHHHHT-----
T ss_pred CCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHH-----
Confidence 4566665321 34555678888887763 2567899999999999999999999854
Q ss_pred CCCChhhhcCeEEEEccC
Q 011816 358 TKAPVEETRKKICLVDSK 375 (477)
Q Consensus 358 ~G~~~eeA~~~i~lvD~~ 375 (477)
.|+ +++.+|+.
T Consensus 161 ~G~-------~V~~~dr~ 171 (315)
T 3pp8_A 161 WGF-------PLRCWSRS 171 (315)
T ss_dssp TTC-------CEEEEESS
T ss_pred CCC-------EEEEEcCC
Confidence 364 67888874
No 179
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=85.89 E-value=4.6 Score=40.45 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=67.2
Q ss_pred HHHHHHhC-CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-
Q 011816 319 VAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE- 396 (477)
Q Consensus 319 l~Alr~~g-~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~- 396 (477)
+.|+.... .--..++|+|+|||+.|...+.+... .|. ++++.+|+. +.+..+++.
T Consensus 201 ~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~-----~Ga------~~Vi~~~~~------------~~~~~~~~~l 257 (404)
T 3ip1_A 201 YNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKH-----AGA------SKVILSEPS------------EVRRNLAKEL 257 (404)
T ss_dssp HHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSC------------HHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECCC------------HHHHHHHHHc
Confidence 44443333 33457899999999888776665542 364 478877752 122223321
Q ss_pred ------cCCCCCHHHHhcc----cCCcEEEeccCCCCCCCHHHHHHHH-cCCCCcEEEEcCCCCCCCCCCHHHHhcccCC
Q 011816 397 ------HEPVNNLLDAVKV----IKPTILIGSSGVGRTFTKEVIEAMA-SFNEKPLILALSNPTSQSECTAEEAYTWSKV 465 (477)
Q Consensus 397 ------~~~~~~L~eav~~----vkptvLIG~S~~~g~Ft~evv~~Ma-~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G 465 (477)
.....++.+.|+. -++|++|-+++......+..++.+. ...+.=-|..+..+....+..+...+. ++
T Consensus 258 Ga~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~--~~ 335 (404)
T 3ip1_A 258 GADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQV--RR 335 (404)
T ss_dssp TCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHH--TT
T ss_pred CCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhc--cc
Confidence 0112345555543 3699999887744223445556650 001233344454444334566655432 44
Q ss_pred cEEEEc
Q 011816 466 QTIILQ 471 (477)
Q Consensus 466 ~aifAs 471 (477)
..|+.+
T Consensus 336 ~~i~g~ 341 (404)
T 3ip1_A 336 AQIVGS 341 (404)
T ss_dssp CEEEEC
T ss_pred eEEEEe
Confidence 555544
No 180
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=85.72 E-value=0.36 Score=48.77 Aligned_cols=118 Identities=17% Similarity=0.336 Sum_probs=70.5
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc-CCCCCHHHH
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDA 406 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~ea 406 (477)
+...||.|+|| |..|..+|-.++. .|+ ...+.++|.+-=..++-.-+|.+. .|.... .-..++.++
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~-----~g~-----~~evvLiDi~~~k~~g~a~DL~~~--~~~~~~i~~t~d~~~a 73 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAM-----MRL-----TPNLCLYDPFAVGLEGVAEEIRHC--GFEGLNLTFTSDIKEA 73 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHH-----TTC-----CSCEEEECSCHHHHHHHHHHHHHH--CCTTCCCEEESCHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHh-----cCC-----CCEEEEEeCCchhHHHHHHhhhhC--cCCCCceEEcCCHHHH
Confidence 34679999998 9999999966654 365 247999997310000000012221 221100 011578899
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcE-EEEcCCCCCCCCCCHHHHhccc
Q 011816 407 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPL-ILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 407 v~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPI-IFaLSNPt~~~E~tpe~A~~~t 463 (477)
+++ +|++|=+.+.+ | ..-+++++.+++++++.+ |+-.|||. ..+..-+++.+
T Consensus 74 l~d--ADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPv---d~~t~i~~k~s 140 (343)
T 3fi9_A 74 LTD--AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPA---DITGLVTLIYS 140 (343)
T ss_dssp HTT--EEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSH---HHHHHHHHHHH
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCch---HHHHHHHHHHc
Confidence 997 99988554433 2 123567778888898885 88899997 44444555544
No 181
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=85.69 E-value=3.2 Score=41.88 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=61.9
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHH
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
|..|.+.++.|+|.|..|..+|+.+.. .|+ +++.+|+.. .. ...... ......+|.|
T Consensus 155 ~~~l~g~tvGIIGlG~IG~~vA~~l~~-----~G~-------~V~~~d~~~----~~----~~~~~~---g~~~~~~l~e 211 (352)
T 3gg9_A 155 GRVLKGQTLGIFGYGKIGQLVAGYGRA-----FGM-------NVLVWGREN----SK----ERARAD---GFAVAESKDA 211 (352)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSHH----HH----HHHHHT---TCEECSSHHH
T ss_pred CccCCCCEEEEEeECHHHHHHHHHHHh-----CCC-------EEEEECCCC----CH----HHHHhc---CceEeCCHHH
Confidence 567889999999999999999998864 264 688888641 00 000000 0011247888
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 406 av~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+++. .|+++=.- ...+.|+++.++.|. +..++.=.|.
T Consensus 212 ll~~--aDiV~l~~Plt~~t~~li~~~~l~~mk---~gailIN~aR 252 (352)
T 3gg9_A 212 LFEQ--SDVLSVHLRLNDETRSIITVADLTRMK---PTALFVNTSR 252 (352)
T ss_dssp HHHH--CSEEEECCCCSTTTTTCBCHHHHTTSC---TTCEEEECSC
T ss_pred HHhh--CCEEEEeccCcHHHHHhhCHHHHhhCC---CCcEEEECCC
Confidence 8876 78777432 223578888888885 5677777775
No 182
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=85.57 E-value=2.7 Score=43.52 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=53.5
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcc
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 409 (477)
--|++|+|+ |-+|.+.++.+.. .|.. ..++...|.+= ..+.. +| +.++.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~-----lGa~----~~~V~v~D~~~---~~~g~-------~~-----------~~i~~ 263 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHK-----VGIP----DANILKWDIKE---TSRGG-------PF-----------DEIPQ 263 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHH-----TTCC----GGGEEEECHHH---HTTCS-------CC-----------THHHH
T ss_pred CCeEEEEcCCCHHHHHHHHHHHh-----CCCC----cCceEEeeccc---cccCC-------ch-----------hhHhh
Confidence 468999999 9999999998865 3641 12566666531 01101 01 23444
Q ss_pred cCCcEEEeccCC----CCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 410 IKPTILIGSSGV----GRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 410 vkptvLIG~S~~----~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.|++||+--. |-++|+|+|+.|.+ +--+|.=+|
T Consensus 264 --aDivIn~vlig~~aP~Lvt~e~v~~m~k--~gsVIVDVA 300 (394)
T 2qrj_A 264 --ADIFINCIYLSKPIAPFTNMEKLNNPNR--RLRTVVDVS 300 (394)
T ss_dssp --SSEEEECCCCCSSCCCSCCHHHHCCTTC--CCCEEEETT
T ss_pred --CCEEEECcCcCCCCCcccCHHHHhcCcC--CCeEEEEEe
Confidence 8999998754 56899999999931 455666555
No 183
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=84.99 E-value=1.4 Score=41.13 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=27.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|..+|..+... |.. ...+++++|++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~-----g~~---~~~~V~~~~r~ 38 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK-----NIV---SSNQIICSDLN 38 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TSS---CGGGEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhC-----CCC---CCCeEEEEeCC
Confidence 5899999999999999998763 531 12478888873
No 184
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=84.92 E-value=2.6 Score=40.72 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=54.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc-----------ccc-CC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-----------HEH-EP 399 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a-----------~~~-~~ 399 (477)
.||.|+|+|..|..+|..|... | .+++++|+..= .+...++... ... ..
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK-----G-------QSVLAWDIDAQ-------RIKEIQDRGAIIAEGPGLAGTAHPDLL 65 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSCHH-------HHHHHHHHTSEEEESSSCCEEECCSEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeCCHH-------HHHHHHhcCCeEEecccccccccccee
Confidence 5899999999999999988652 4 25788887410 0111111000 000 01
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 011816 400 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 447 (477)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 447 (477)
..++.++++. +|++|=+.. . ...+++++.++.. .+..+|+.+.|
T Consensus 66 ~~~~~~~~~~--~D~vi~~v~-~-~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 66 TSDIGLAVKD--ADVILIVVP-A-IHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp ESCHHHHHTT--CSEEEECSC-G-GGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred cCCHHHHHhc--CCEEEEeCC-c-hHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 2467787765 887773332 2 2457888887653 33556666644
No 185
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=84.73 E-value=1.4 Score=42.93 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=27.7
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
....||.|+|+|..|.++|..+... |. +++++|+.
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~-----G~-------~V~~~dr~ 63 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEA-----GY-------ALQVWNRT 63 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred cCCCEEEEECccHHHHHHHHHHHhC-----CC-------eEEEEcCC
Confidence 3457999999999999999998753 53 57777763
No 186
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=84.71 E-value=1.1 Score=44.19 Aligned_cols=35 Identities=20% Similarity=0.479 Sum_probs=27.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..||||+|||.||+.+|..|.+. |- .-+|.++|++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~-----~~-----~~~Vtlie~~ 36 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLA-----DP-----SIEVTLIEPN 36 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CT-----TSEEEEECSC
T ss_pred cCEEEEECCcHHHHHHHHHHHhc-----Cc-----CCeEEEEeCC
Confidence 46899999999999999998653 31 1378889875
No 187
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=84.70 E-value=2 Score=41.88 Aligned_cols=132 Identities=15% Similarity=0.042 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh
Q 011816 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (477)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~ 393 (477)
.++..+.|++..+ - ..++|+|+|||..|..++.++.. .|. ++++.+|+. ..+ +...++.=
T Consensus 153 ~~~ta~~~l~~~~-~-~g~~VlV~GaG~vG~~~~q~a~~-----~Ga------~~Vi~~~~~----~~~---~~~~~~~G 212 (348)
T 2d8a_A 153 PLGNAVDTVLAGP-I-SGKSVLITGAGPLGLLGIAVAKA-----SGA------YPVIVSEPS----DFR---RELAKKVG 212 (348)
T ss_dssp HHHHHHHHHTTSC-C-TTCCEEEECCSHHHHHHHHHHHH-----TTC------CSEEEECSC----HHH---HHHHHHHT
T ss_pred HHHHHHHHHHhcC-C-CCCEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECCC----HHH---HHHHHHhC
Confidence 3344455664333 3 88999999999888888776543 353 368877753 111 11111100
Q ss_pred ccc--cCCCCCHHHHhcc----cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCH-HHHhcccCCc
Q 011816 394 AHE--HEPVNNLLDAVKV----IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTA-EEAYTWSKVQ 466 (477)
Q Consensus 394 a~~--~~~~~~L~eav~~----vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tp-e~A~~~t~G~ 466 (477)
|.. .....++.+.++. -++|++|=.++.+ ...++.++.|+. .=.|.-++.+....+..+ ...+ .++.
T Consensus 213 a~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~-~~~~~~~~~l~~---~G~iv~~g~~~~~~~~~~~~~~~--~~~~ 286 (348)
T 2d8a_A 213 ADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAP-KALEQGLQAVTP---AGRVSLLGLYPGKVTIDFNNLII--FKAL 286 (348)
T ss_dssp CSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCH-HHHHHHHHHEEE---EEEEEECCCCSSCCCCCHHHHTT--TTTC
T ss_pred CCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCH-HHHHHHHHHHhc---CCEEEEEccCCCCcccCchHHHH--hCCc
Confidence 110 0112356665543 2589999877632 234566666653 223444555443345555 4432 2445
Q ss_pred EEEEc
Q 011816 467 TIILQ 471 (477)
Q Consensus 467 aifAs 471 (477)
-+..+
T Consensus 287 ~i~g~ 291 (348)
T 2d8a_A 287 TIYGI 291 (348)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55543
No 188
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=84.69 E-value=1.6 Score=45.53 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=59.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc-----cccCCCCCHHHHh
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-----HEHEPVNNLLDAV 407 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a-----~~~~~~~~L~eav 407 (477)
||.|+|+|..|..+|..|... |. +++++|+.. ++ .....+.+- .......++.|++
T Consensus 3 kIgVIG~G~mG~~lA~~La~~-----G~-------~V~v~dr~~----~~---~~~l~~~~g~~~~~~~i~~~~~~~e~v 63 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEK-----GF-------KVAVFNRTY----SK---SEEFMKANASAPFAGNLKAFETMEAFA 63 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSH----HH---HHHHHHHTTTSTTGGGEEECSCHHHHH
T ss_pred EEEEEChHHHHHHHHHHHHHC-----CC-------EEEEEeCCH----HH---HHHHHHhcCCCCCCCCeEEECCHHHHH
Confidence 799999999999999988653 53 577887631 11 111111100 0011235788888
Q ss_pred ccc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 011816 408 KVI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (477)
Q Consensus 408 ~~v-kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (477)
+.. ++|++| ++...+...+++++.+... .+..||.-+||-.
T Consensus 64 ~~l~~aDvVi-laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 64 ASLKKPRKAL-ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp HHBCSSCEEE-ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred hcccCCCEEE-EecCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 743 488887 4444444567788777543 3456888888865
No 189
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=84.55 E-value=1.3 Score=43.33 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|.++|..+... |. -+++++|+.
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~-----G~------~~V~~~dr~ 57 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR-----NA------ARLAAYDLR 57 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-----TC------SEEEEECGG
T ss_pred CeEEEECccHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 5899999999999999998753 51 368888875
No 190
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=84.55 E-value=1.3 Score=42.62 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=51.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
.||.|+|+|..|..+|..+... |. +++++|+. . +.+...++. ......++.++++.
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~-----g~-------~V~~~~~~----~---~~~~~~~~~---g~~~~~~~~~~~~~-- 86 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM-----GH-------TVTVWNRT----A---EKCDLFIQE---GARLGRTPAEVVST-- 86 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS----G---GGGHHHHHT---TCEECSCHHHHHHH--
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEeCC----H---HHHHHHHHc---CCEEcCCHHHHHhc--
Confidence 6899999999999999988652 53 57888763 1 112111110 00112467777775
Q ss_pred CcEEEeccCCCCCCCHHHHHHH----HcCCCCcEEEEcCCC
Q 011816 412 PTILIGSSGVGRTFTKEVIEAM----ASFNEKPLILALSNP 448 (477)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv~~M----a~~~erPIIFaLSNP 448 (477)
+|++|=+...+ .-.++++... ....+..+|+-+||-
T Consensus 87 ~DvVi~av~~~-~~~~~v~~~~~~~~~~l~~~~~vv~~s~~ 126 (316)
T 2uyy_A 87 CDITFACVSDP-KAAKDLVLGPSGVLQGIRPGKCYVDMSTV 126 (316)
T ss_dssp CSEEEECCSSH-HHHHHHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred CCEEEEeCCCH-HHHHHHHcCchhHhhcCCCCCEEEECCCC
Confidence 78776322211 2334444432 123345677777773
No 191
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=84.50 E-value=1.2 Score=43.45 Aligned_cols=131 Identities=19% Similarity=0.145 Sum_probs=70.3
Q ss_pred HHHHHHHHHH-HhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchh
Q 011816 314 VLAGVVAALK-LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 392 (477)
Q Consensus 314 ~LAgll~Alr-~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~ 392 (477)
.++..+.+++ ..+ - ..++++|+|||..|..++.+... .|. ++++.+|+. ..+ ++..++.
T Consensus 149 ~~~ta~~~l~~~~~-~-~g~~VlV~GaG~vG~~~~q~a~~-----~Ga------~~Vi~~~~~----~~~---~~~~~~l 208 (343)
T 2dq4_A 149 PFGNAVHTVYAGSG-V-SGKSVLITGAGPIGLMAAMVVRA-----SGA------GPILVSDPN----PYR---LAFARPY 208 (343)
T ss_dssp HHHHHHHHHHSTTC-C-TTSCEEEECCSHHHHHHHHHHHH-----TTC------CSEEEECSC----HHH---HGGGTTT
T ss_pred HHHHHHHHHHHhCC-C-CCCEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECCC----HHH---HHHHHHh
Confidence 4444456665 333 3 88999999999888887766543 353 468888763 111 1111221
Q ss_pred hccc--cCCCCCHHHHhcc---cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCH-HHHhcccCCc
Q 011816 393 WAHE--HEPVNNLLDAVKV---IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTA-EEAYTWSKVQ 466 (477)
Q Consensus 393 ~a~~--~~~~~~L~eav~~---vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tp-e~A~~~t~G~ 466 (477)
|.. .....++.+.++. -++|++|=+++.. ...++.++.|+.. =.|.-++.+....++.+ ...+ .++.
T Consensus 209 -a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~~l~~~---G~iv~~g~~~~~~~~~~~~~~~--~~~~ 281 (343)
T 2dq4_A 209 -ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE-AAIHQGLMALIPG---GEARILGIPSDPIRFDLAGELV--MRGI 281 (343)
T ss_dssp -CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH-HHHHHHHHHEEEE---EEEEECCCCSSCEEECHHHHTG--GGTC
T ss_pred -HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH-HHHHHHHHHHhcC---CEEEEEecCCCCceeCcHHHHH--hCce
Confidence 221 1112356666653 3689999877642 2345667777532 23434444443344555 4433 2344
Q ss_pred EEEEc
Q 011816 467 TIILQ 471 (477)
Q Consensus 467 aifAs 471 (477)
-|..+
T Consensus 282 ~i~g~ 286 (343)
T 2dq4_A 282 TAFGI 286 (343)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55543
No 192
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=84.37 E-value=2.3 Score=44.17 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=62.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 409 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~ 409 (477)
..||.|+|+|..|..+|..|... |. +++++|+. . +......+.+.. ......++.|+++.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~-----G~-------~V~v~dr~----~---~~~~~l~~~~~~~gi~~~~s~~e~v~~ 65 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESR-----GY-------TVAIYNRT----T---SKTEEVFKEHQDKNLVFTKTLEEFVGS 65 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS----H---HHHHHHHHHTTTSCEEECSSHHHHHHT
T ss_pred CCcEEEEeeHHHHHHHHHHHHhC-----CC-------EEEEEcCC----H---HHHHHHHHhCcCCCeEEeCCHHHHHhh
Confidence 36899999999999999998753 53 57777763 1 112222211100 01123578888875
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 410 I-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 410 v-kptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
. ++|++| ++.+.+...+++++.+...- +..||.-+||-.
T Consensus 66 l~~aDvVi-lavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (474)
T 2iz1_A 66 LEKPRRIM-LMVQAGAATDATIKSLLPLLDIGDILIDGGNTH 106 (474)
T ss_dssp BCSSCEEE-ECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred ccCCCEEE-EEccCchHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 3 588877 45444456778888776543 456888888865
No 193
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=84.26 E-value=2.9 Score=41.10 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=28.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.||.|+|+|..|.++|..+... |. ..+++++|++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~-----G~-----~~~V~~~dr~ 67 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS-----GF-----KGKIYGYDIN 67 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT-----TC-----CSEEEEECSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-----CC-----CCEEEEEECC
Confidence 37999999999999999998763 64 1478888874
No 194
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=84.23 E-value=1.8 Score=39.30 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=60.0
Q ss_pred CCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch-hhcc-ccCCCCCH
Q 011816 327 GTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWAH-EHEPVNNL 403 (477)
Q Consensus 327 ~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-~~a~-~~~~~~~L 403 (477)
.+|++.+|+|.|| |-.|..+++.|++ .|. ++++++++. ++.+.+..... .+.. +.. .++
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~-----~G~-------~V~~~~R~~----~~~~~~~~~~~~~~~~~Dl~--~~~ 78 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKN-----KGH-------EPVAMVRNE----EQGPELRERGASDIVVANLE--EDF 78 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHH-----TTC-------EEEEEESSG----GGHHHHHHTTCSEEEECCTT--SCC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHh-----CCC-------eEEEEECCh----HHHHHHHhCCCceEEEcccH--HHH
Confidence 4678899999998 8889999988875 252 788887741 11000111111 1111 111 567
Q ss_pred HHHhcccCCcEEEeccCCCCC------------CCHHHHHHHHcCCCCcEEEEcCC
Q 011816 404 LDAVKVIKPTILIGSSGVGRT------------FTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~------------Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
.+++++ +|++|=+.+.... -+..+++++.+..-+-|||.=|-
T Consensus 79 ~~~~~~--~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 132 (236)
T 3e8x_A 79 SHAFAS--IDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132 (236)
T ss_dssp GGGGTT--CSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred HHHHcC--CCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 777775 9999977765421 14567888876666778885553
No 195
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=84.20 E-value=0.66 Score=46.16 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=61.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc----ccCCCCCHHHHh
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EHEPVNNLLDAV 407 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~----~~~~~~~L~eav 407 (477)
.||+|+|||-.|-.+|+.|.+ ..++.++|... +.+...+ +++. +..+..+|.+++
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-------------~~~v~~~~~~~-------~~~~~~~-~~~~~~~~d~~d~~~l~~~~ 75 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-------------EFDVYIGDVNN-------ENLEKVK-EFATPLKVDASNFDKLVEVM 75 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------------TSEEEEEESCH-------HHHHHHT-TTSEEEECCTTCHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHhc-------------CCCeEEEEcCH-------HHHHHHh-ccCCcEEEecCCHHHHHHHH
Confidence 379999999999888877632 13577777531 1122111 2222 122234688888
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEE
Q 011816 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTI 468 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~ai 468 (477)
++ .|++|-+. |..+..+++++-.+... . +|-+|--.......-++|.+ .|..+
T Consensus 76 ~~--~DvVi~~~--p~~~~~~v~~~~~~~g~-~-yvD~s~~~~~~~~l~~~a~~--~g~~~ 128 (365)
T 3abi_A 76 KE--FELVIGAL--PGFLGFKSIKAAIKSKV-D-MVDVSFMPENPLELRDEAEK--AQVTI 128 (365)
T ss_dssp TT--CSEEEECC--CGGGHHHHHHHHHHHTC-E-EEECCCCSSCGGGGHHHHHH--TTCEE
T ss_pred hC--CCEEEEec--CCcccchHHHHHHhcCc-c-eEeeeccchhhhhhhhhhcc--CCcee
Confidence 86 89998544 44678888888765433 3 55566433222223345544 45443
No 196
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=84.16 E-value=0.85 Score=43.61 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=50.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHHHhccc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~v 410 (477)
.||.|+|+|..|.++|..+... |. +++++|+.- +.+. .+++. .....++.|+++.
T Consensus 4 ~~I~iiG~G~mG~~~a~~l~~~-----G~-------~V~~~d~~~-------~~~~----~~~~~g~~~~~~~~~~~~~- 59 (302)
T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKA-----GY-------LLNVFDLVQ-------SAVD----GLVAAGASAARSARDAVQG- 59 (302)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----TC-------EEEEECSSH-------HHHH----HHHHTTCEECSSHHHHHTT-
T ss_pred CEEEEEeecHHHHHHHHHHHhC-----CC-------eEEEEcCCH-------HHHH----HHHHCCCeEcCCHHHHHhC-
Confidence 5899999999999999998753 53 678777631 1111 11111 1112467777765
Q ss_pred CCcEEEeccCCCCCCCHHHHH---HHHc-CCCCcEEEEcCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIE---AMAS-FNEKPLILALSNP 448 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~---~Ma~-~~erPIIFaLSNP 448 (477)
+|++|= +.....-.++++. .+.+ ..+..+|+.+|+-
T Consensus 60 -aDvvi~-~vp~~~~~~~v~~~~~~~~~~l~~~~~vi~~st~ 99 (302)
T 2h78_A 60 -ADVVIS-MLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTI 99 (302)
T ss_dssp -CSEEEE-CCSCHHHHHHHHHSSSCGGGSSCSSCEEEECSCC
T ss_pred -CCeEEE-ECCCHHHHHHHHcCchhHHhcCCCCcEEEECCCC
Confidence 676662 2211122344443 2322 2345566666653
No 197
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=84.08 E-value=1.3 Score=42.29 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=50.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
.||.|+|+|..|.++|..+... |. +++++|+. .+ .....++. ......++.|+++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~-----G~-------~V~~~dr~----~~---~~~~~~~~---g~~~~~~~~~~~~~-- 57 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA-----GC-------SVTIWNRS----PE---KAEELAAL---GAERAATPCEVVES-- 57 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSS----GG---GGHHHHHT---TCEECSSHHHHHHH--
T ss_pred CEEEEEeecHHHHHHHHHHHHC-----CC-------eEEEEcCC----HH---HHHHHHHC---CCeecCCHHHHHhc--
Confidence 5899999999999999998753 53 67777763 11 11111110 11123567777776
Q ss_pred CcEEEeccCCCCCCCHHHH---HHHHc-CCCCcEEEEcCC
Q 011816 412 PTILIGSSGVGRTFTKEVI---EAMAS-FNEKPLILALSN 447 (477)
Q Consensus 412 ptvLIG~S~~~g~Ft~evv---~~Ma~-~~erPIIFaLSN 447 (477)
+|++| ++.....-.++++ +.+.+ ..+..+|.-+|+
T Consensus 58 aDvvi-~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st 96 (287)
T 3pef_A 58 CPVTF-AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMST 96 (287)
T ss_dssp CSEEE-ECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred CCEEE-EEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence 67766 2222112233444 33322 234556666665
No 198
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=84.03 E-value=0.78 Score=46.10 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=33.2
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++|++.+|+|+|+|..|..||+.|+.+ |+ ++|.++|.+
T Consensus 32 ~~L~~~~VlivG~GGlG~~ia~~La~~-----Gv------g~itlvD~d 69 (346)
T 1y8q_A 32 KRLRASRVLLVGLKGLGAEIAKNLILA-----GV------KGLTMLDHE 69 (346)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECC
Confidence 357788999999999999999999876 65 799999976
No 199
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=83.98 E-value=2.8 Score=39.96 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=62.9
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh----chhhcc-ccCCCCC
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNN 402 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~----k~~~a~-~~~~~~~ 402 (477)
++..||+|.|| |-.|..+++.|++. |- .-+++.+|+...- .....+... ...+.. +..+..+
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~-----g~-----~~~v~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~ 89 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQS-----YE-----TYKIINFDALTYS--GNLNNVKSIQDHPNYYFVKGEIQNGEL 89 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHH-----CT-----TEEEEEEECCCTT--CCGGGGTTTTTCTTEEEEECCTTCHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhh-----CC-----CcEEEEEeccccc--cchhhhhhhccCCCeEEEEcCCCCHHH
Confidence 45679999998 99999999988763 52 2367777765321 111111110 111111 1122245
Q ss_pred HHHHhcccCCcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEEcC
Q 011816 403 LLDAVKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 403 L~eav~~vkptvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFaLS 446 (477)
+.++++..++|++|=+.+....- |..+++++.+..-+-+||.=|
T Consensus 90 ~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 90 LEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp HHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 88888888899999887754211 356788887766666888543
No 200
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=83.92 E-value=0.91 Score=43.77 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~-----~G~-------~v~v~Er~ 33 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK-----HGI-------KVTIYERN 33 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 489999999999999988865 375 46677753
No 201
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=83.90 E-value=1.2 Score=43.12 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+...||.|+|+|..|.++|..|... |. +++++|+.
T Consensus 6 ~~~~~~IgiIG~G~mG~~~A~~l~~~-----G~-------~V~~~dr~ 41 (306)
T 3l6d_A 6 ESFEFDVSVIGLGAMGTIMAQVLLKQ-----GK-------RVAIWNRS 41 (306)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 34567999999999999999998763 53 57777763
No 202
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=83.75 E-value=0.81 Score=39.37 Aligned_cols=34 Identities=6% Similarity=0.160 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|+|+|+|..|..+++.|... | .++.++|++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~-----g-------~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQR-----G-------QNVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHT-----T-------CCEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEECC
Confidence 356899999999999999988652 4 368888874
No 203
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=83.75 E-value=3.6 Score=41.05 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=75.0
Q ss_pred CCCceeccCC---CchHHHHHHHHHHHHHH--------------------hCCCCccceEEEeCcchHHHHHHHHHHHHH
Q 011816 298 TTHLVFNDDI---QGTASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 354 (477)
Q Consensus 298 ~~~~~FnDDi---QGTaaV~LAgll~Alr~--------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~ 354 (477)
..|+|.|--- +.+|=-+++-+|+..|- .|..|.+.++.|+|.|..|..+|+.+..
T Consensus 89 ~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~-- 166 (330)
T 4e5n_A 89 RGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQG-- 166 (330)
T ss_dssp TTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTT--
T ss_pred cCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHH--
Confidence 3555555422 23445677777776652 2456889999999999999999998753
Q ss_pred HhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHH
Q 011816 355 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVI 430 (477)
Q Consensus 355 ~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~Ft~evv 430 (477)
.|+ +++.+|+... . ....+..-+ ...+|.|+++. .|+++=.- ...+.++++.+
T Consensus 167 ---~G~-------~V~~~d~~~~----~---~~~~~~~g~----~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l 223 (330)
T 4e5n_A 167 ---WGA-------TLQYHEAKAL----D---TQTEQRLGL----RQVACSELFAS--SDFILLALPLNADTLHLVNAELL 223 (330)
T ss_dssp ---SCC-------EEEEECSSCC----C---HHHHHHHTE----EECCHHHHHHH--CSEEEECCCCSTTTTTCBCHHHH
T ss_pred ---CCC-------EEEEECCCCC----c---HhHHHhcCc----eeCCHHHHHhh--CCEEEEcCCCCHHHHHHhCHHHH
Confidence 364 6888887531 0 111111001 11367777776 77776432 12357777777
Q ss_pred HHHHcCCCCcEEEEcCC
Q 011816 431 EAMASFNEKPLILALSN 447 (477)
Q Consensus 431 ~~Ma~~~erPIIFaLSN 447 (477)
+.|. +..+|.=.|+
T Consensus 224 ~~mk---~gailIN~ar 237 (330)
T 4e5n_A 224 ALVR---PGALLVNPCR 237 (330)
T ss_dssp TTSC---TTEEEEECSC
T ss_pred hhCC---CCcEEEECCC
Confidence 7775 5667776665
No 204
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=83.74 E-value=2.6 Score=39.66 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~-----g~-----~~~V~~~d~~ 35 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRS-----GF-----KGKIYGYDIN 35 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-----TC-----CSEEEEECSC
T ss_pred cEEEEEecCHHHHHHHHHHHhc-----CC-----CcEEEEEeCC
Confidence 3799999999999999988652 53 1368888864
No 205
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=83.55 E-value=4.6 Score=39.25 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=27.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..||.|+|+|..|.++|..|... |. ++++++|+.
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~-----G~------~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA-----GA------IDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH-----SC------CEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CC------CeEEEEcCC
Confidence 36899999999999999999764 52 478888873
No 206
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=83.35 E-value=0.68 Score=50.61 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=33.6
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+|++.||+|+|||..|..+|+.|+.+ |+ .+|.++|.+=
T Consensus 323 kL~~arVLIVGaGGLGs~vA~~La~a-----GV------G~ItLvD~D~ 360 (615)
T 4gsl_A 323 IIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNGT 360 (615)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHT-----TC------CEEEEECCCB
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCC
Confidence 67889999999999999999999875 75 6999999874
No 207
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=83.35 E-value=1.8 Score=40.85 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.8
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
.||.|+|+|..|..+|..+..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~ 24 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLAR 24 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHh
Confidence 489999999999999998865
No 208
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=83.30 E-value=5.6 Score=39.98 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=70.8
Q ss_pred CCCceeccCCC---chHHHHHHHHHHHHHHh------------------------C-CCCccceEEEeCcchHHHHHHHH
Q 011816 298 TTHLVFNDDIQ---GTASVVLAGVVAALKLI------------------------G-GTLAEHRFLFLGAGEAGTGIAEL 349 (477)
Q Consensus 298 ~~~~~FnDDiQ---GTaaV~LAgll~Alr~~------------------------g-~~l~d~riv~~GAGsAg~Gia~l 349 (477)
..|.|.|---- .+|=-+++.+|+..|-. | ..|.+.++.|+|.|..|..+|+.
T Consensus 107 ~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~ 186 (347)
T 1mx3_A 107 LGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 186 (347)
T ss_dssp TTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHH
Confidence 45666664332 34445778888877621 1 46889999999999999999998
Q ss_pred HHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCC
Q 011816 350 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTF 425 (477)
Q Consensus 350 l~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLIG~S----~~~g~F 425 (477)
+.. .|+ +++.+|++- .. . .. +.+ ......+|.|+++. .|+++=.- ...+++
T Consensus 187 l~~-----~G~-------~V~~~d~~~----~~-~-~~---~~~--g~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li 241 (347)
T 1mx3_A 187 AKA-----FGF-------NVLFYDPYL----SD-G-VE---RAL--GLQRVSTLQDLLFH--SDCVTLHCGLNEHNHHLI 241 (347)
T ss_dssp HHT-----TTC-------EEEEECTTS----CT-T-HH---HHH--TCEECSSHHHHHHH--CSEEEECCCCCTTCTTSB
T ss_pred HHH-----CCC-------EEEEECCCc----ch-h-hH---hhc--CCeecCCHHHHHhc--CCEEEEcCCCCHHHHHHh
Confidence 864 364 688888641 11 0 10 011 00112356666665 66655321 122456
Q ss_pred CHHHHHHHHcCCCCcEEEEcCC
Q 011816 426 TKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 426 t~evv~~Ma~~~erPIIFaLSN 447 (477)
+++.++.|. +..++.-.|.
T Consensus 242 ~~~~l~~mk---~gailIN~ar 260 (347)
T 1mx3_A 242 NDFTVKQMR---QGAFLVNTAR 260 (347)
T ss_dssp SHHHHTTSC---TTEEEEECSC
T ss_pred HHHHHhcCC---CCCEEEECCC
Confidence 666666664 4556665554
No 209
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=83.28 E-value=0.59 Score=50.90 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=33.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|++.||+|+|||..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~a-----GV------G~ItLvD~D 360 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNG 360 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTT-----TC------CEEEEECCS
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 477889999999999999999999864 75 699999976
No 210
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=83.01 E-value=0.41 Score=48.06 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=78.5
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC---cccCCCCCCCchhchhhccccCCCCCHHHHh
Q 011816 332 HRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG---LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (477)
Q Consensus 332 ~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G---Li~~~r~~~l~~~k~~~a~~~~~~~~L~eav 407 (477)
.||+|.| ||..|..+|.+|+. .|+--++-.-.+.|+|... .+.-...| |.+...+|.+......++.+++
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~-----~~~~~e~~~~~l~L~Di~~~~~~~~g~a~D-L~~~~~~~~~~~~~~~~~~~~~ 77 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGN-----GSVFGKDQPIILVLLDITPMMGVLDGVLME-LQDCALPLLKDVIATDKEEIAF 77 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHT-----TTTTCTTCCEEEEEECCGGGHHHHHHHHHH-HHHTCCTTEEEEEEESCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CCCccccCCCEEEEEeCCCccccchhhHhh-hHhhhhcccCCEEEcCCcHHHh
Confidence 5899999 79999999988864 2441110111389999852 11111111 3332223433222225688889
Q ss_pred cccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcE-EEEcCCCCCCCCCCHHHHhcccCC--cEEEE
Q 011816 408 KVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPL-ILALSNPTSQSECTAEEAYTWSKV--QTIIL 470 (477)
Q Consensus 408 ~~vkptvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPI-IFaLSNPt~~~E~tpe~A~~~t~G--~aifA 470 (477)
++ .|++|=+.+.+ | ...+++++.+.+++.+-+ |+-.|||. .++..-+++.+.+ +-.|.
T Consensus 78 ~d--aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPv---d~~t~~~~~~~~~~p~~~ig 152 (333)
T 5mdh_A 78 KD--LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPA---NTNCLTASKSAPSIPKENFS 152 (333)
T ss_dssp TT--CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH---HHHHHHHHHTCTTSCGGGEE
T ss_pred CC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCch---HHHHHHHHHHcCCCCcCEEE
Confidence 87 99988555433 2 134678888888888874 88899997 5666666665532 12355
Q ss_pred cC
Q 011816 471 QH 472 (477)
Q Consensus 471 sG 472 (477)
+|
T Consensus 153 ~~ 154 (333)
T 5mdh_A 153 CL 154 (333)
T ss_dssp EC
T ss_pred EE
Confidence 55
No 211
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=83.00 E-value=2.2 Score=41.39 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+-.||.|+|+|..|.++|..|... |. +++++|+.
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~-----G~-------~V~~~dr~ 53 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKN-----GF-------KVTVWNRT 53 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSS
T ss_pred cccCCEEEEECccHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 34457999999999999999998763 53 67778773
No 212
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=82.95 E-value=1.2 Score=41.66 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=57.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVK 408 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~ 408 (477)
+..||+|.|||-.|..+++.|++. |. +++.++++- ..+.+ ...+.. +..+..++.++++
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~-----g~-------~V~~~~r~~-------~~~~~-~~~~~~~Dl~d~~~~~~~~~ 61 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQ-----GH-------EVTGLRRSA-------QPMPA-GVQTLIADVTRPDTLASIVH 61 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEECTT-------SCCCT-TCCEEECCTTCGGGCTTGGG
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCc-------ccccc-CCceEEccCCChHHHHHhhc
Confidence 346899999999999999888752 52 677777641 11211 111211 2222234566666
Q ss_pred ccCCcEEEeccCCCC-----------CCCHHHHHHHHcCCCCcEEEEcC
Q 011816 409 VIKPTILIGSSGVGR-----------TFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 409 ~vkptvLIG~S~~~g-----------~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+ ++|++|=+.+... ..+..+++++.+..-+.+||.=|
T Consensus 62 ~-~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS 109 (286)
T 3gpi_A 62 L-RPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS 109 (286)
T ss_dssp G-CCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred C-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence 4 6999997664321 12567788777655567887544
No 213
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=82.73 E-value=2.6 Score=44.46 Aligned_cols=99 Identities=14% Similarity=0.204 Sum_probs=62.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc--CCCCCHHHHhc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVK 408 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~eav~ 408 (477)
..+|.|+|+|..|.++|..|... |. +++++|+. . +......+.-+... ....++.|+++
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~-----G~-------~V~v~dr~----~---~~~~~l~~~g~~g~~i~~~~s~~e~v~ 64 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH-----GF-------VVCAFNRT----V---SKVDDFLANEAKGTKVVGAQSLKEMVS 64 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS----T---HHHHHHHHTTTTTSSCEECSSHHHHHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHC-----CC-------EEEEEeCC----H---HHHHHHHhcccCCCceeccCCHHHHHh
Confidence 35899999999999999998763 53 57777763 1 11111111111110 11367899887
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 011816 409 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 449 (477)
Q Consensus 409 ~v-kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 449 (477)
.+ +||++| ++.+.+...+++++.+..+ .+..||.-+||-.
T Consensus 65 ~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 65 KLKKPRRII-LLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp TBCSSCEEE-ECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred hccCCCEEE-EecCChHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 53 488777 4444445677788877654 3567888888854
No 214
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=82.65 E-value=4.9 Score=42.69 Aligned_cols=98 Identities=15% Similarity=0.262 Sum_probs=57.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc-hhchhhcc-c--cCCCCC-HHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-HFKKPWAH-E--HEPVNN-LLD 405 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~-~~k~~~a~-~--~~~~~~-L~e 405 (477)
+.||||+|||+.|-++|.+|++- .++. ..+|.+.|+.- .+.+ +. .....+.. . ..+... |..
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~----~dv~----~~~I~vaD~~~----~~~~-~~~~~g~~~~~~~Vdadnv~~~l~a 79 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEK----FDIK----PSQVTIIAAEG----TKVD-VAQQYGVSFKLQQITPQNYLEVIGS 79 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHH----BCCC----GGGEEEEESSC----CSCC-HHHHHTCEEEECCCCTTTHHHHTGG
T ss_pred CCCEEEECcCHHHHHHHHHHHhC----CCCc----eeEEEEeccch----hhhh-HHhhcCCceeEEeccchhHHHHHHH
Confidence 57899999999999999999764 2332 24788888642 1111 11 11112221 1 111112 344
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
.|+. +|++|=+|- ..++.+++++-.+ ..--.+-++|
T Consensus 80 Ll~~--~DvVIN~s~--~~~~l~Im~acle--aGv~YlDTa~ 115 (480)
T 2ph5_A 80 TLEE--NDFLIDVSI--GISSLALIILCNQ--KGALYINAAT 115 (480)
T ss_dssp GCCT--TCEEEECCS--SSCHHHHHHHHHH--HTCEEEESSC
T ss_pred HhcC--CCEEEECCc--cccCHHHHHHHHH--cCCCEEECCC
Confidence 5654 599996553 3577788887653 2345666776
No 215
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=82.21 E-value=1 Score=42.39 Aligned_cols=35 Identities=11% Similarity=0.328 Sum_probs=28.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..+|+|+|||.||+..|..|.+ .|+ ++.++|+..
T Consensus 2 ~~~~vvIIG~G~aGl~~A~~l~~-----~g~-------~v~vie~~~ 36 (357)
T 4a9w_A 2 DSVDVVVIGGGQSGLSAGYFLRR-----SGL-------SYVILDAEA 36 (357)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH-----SSC-------CEEEECCSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEECCC
Confidence 34689999999999999998865 354 688999864
No 216
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=82.15 E-value=1.3 Score=43.97 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=74.5
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCC--CCCHHHHhcc
Q 011816 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDAVKV 409 (477)
Q Consensus 333 riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~--~~~L~eav~~ 409 (477)
||.|+| +|..|..+|-+|... .++ ...+.++|..-. ..+..-+|.+. ++-..... ..+..++.++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~----~~~-----~~el~L~Di~~~-~~G~a~Dl~~~--~~~~~v~~~~~~~~~~~~~~ 69 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQ----LPS-----GSELSLYDIAPV-TPGVAVDLSHI--PTAVKIKGFSGEDATPALEG 69 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH----SCT-----TEEEEEECSSTT-HHHHHHHHHTS--CSSEEEEEECSSCCHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHHHhC----CCC-----CceEEEEecCCC-chhHHHHhhCC--CCCceEEEecCCCcHHHhCC
Confidence 899999 899999999887542 233 258999999641 11110012211 11000000 0256788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHH---Hhccc---CCcEEE
Q 011816 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEE---AYTWS---KVQTII 469 (477)
Q Consensus 410 vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~---A~~~t---~G~aif 469 (477)
+|++|=+.+.+ |- +-+++++.+++++++.+|+-.|||. .....- +++.+ .-+-+|
T Consensus 70 --aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPv---d~~t~~a~~~~k~sg~~p~~rv~ 144 (312)
T 3hhp_A 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPV---NTTVAIAAEVLKKAGVYDKNKLF 144 (312)
T ss_dssp --CSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH---HHHHHHHHHHHHHTTCCCTTSEE
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcc---hhHHHHHHHHHHHcCCCCcceEE
Confidence 99988666543 21 2256777888899999999999997 233322 45443 334567
Q ss_pred EcC
Q 011816 470 LQH 472 (477)
Q Consensus 470 AsG 472 (477)
++|
T Consensus 145 G~~ 147 (312)
T 3hhp_A 145 GVT 147 (312)
T ss_dssp ECC
T ss_pred EEe
Confidence 776
No 217
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=82.04 E-value=1.6 Score=41.51 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|.++|..+... |. +++++|+.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~-----G~-------~V~~~dr~ 33 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRA-----GF-------DVTVWNRN 33 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHH-----TC-------CEEEECSS
T ss_pred CeEEEEccCHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 3799999999999999998764 53 57777763
No 218
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=81.96 E-value=3.1 Score=41.10 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh
Q 011816 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (477)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~ 393 (477)
+....+.|++..+.....++++|.|||..|..++.++.. .|. +++.+|+. .++ +...++.+
T Consensus 171 ~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~-----~Ga-------~Vi~~~~~----~~~---~~~~~~~l 231 (366)
T 1yqd_A 171 AGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKA-----FGS-------KVTVISTS----PSK---KEEALKNF 231 (366)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESC----GGG---HHHHHHTS
T ss_pred hHHHHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCC----HHH---HHHHHHhc
Confidence 334445677766655478999999999988888776543 352 57877753 111 11111111
Q ss_pred -cc---ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEE
Q 011816 394 -AH---EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTII 469 (477)
Q Consensus 394 -a~---~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aif 469 (477)
|. +..+...+.++.. ++|++|=+++.. ...++.++.|+. .=.|.-++.+....+..+...+. ++.-|.
T Consensus 232 Ga~~v~~~~~~~~~~~~~~--~~D~vid~~g~~-~~~~~~~~~l~~---~G~iv~~g~~~~~~~~~~~~~~~--~~~~i~ 303 (366)
T 1yqd_A 232 GADSFLVSRDQEQMQAAAG--TLDGIIDTVSAV-HPLLPLFGLLKS---HGKLILVGAPEKPLELPAFSLIA--GRKIVA 303 (366)
T ss_dssp CCSEEEETTCHHHHHHTTT--CEEEEEECCSSC-CCSHHHHHHEEE---EEEEEECCCCSSCEEECHHHHHT--TTCEEE
T ss_pred CCceEEeccCHHHHHHhhC--CCCEEEECCCcH-HHHHHHHHHHhc---CCEEEEEccCCCCCCcCHHHHHh--CCcEEE
Confidence 11 0011011233222 589999877744 345788888864 22444455554333455555433 345554
Q ss_pred E
Q 011816 470 L 470 (477)
Q Consensus 470 A 470 (477)
.
T Consensus 304 g 304 (366)
T 1yqd_A 304 G 304 (366)
T ss_dssp E
T ss_pred E
Confidence 4
No 219
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=81.91 E-value=1.2 Score=40.03 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=58.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh-----chhhcc-ccCCCCCHH
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-----KKPWAH-EHEPVNNLL 404 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~-----k~~~a~-~~~~~~~L~ 404 (477)
.+|+|.|| |-.|..+++.|++. .|. ++++++++. + ..+... +..+.. +..+..++.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~----~g~-------~V~~~~r~~----~--~~~~~~~~~~~~~~~~~~D~~d~~~~~ 68 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTY----TDM-------HITLYGRQL----K--TRIPPEIIDHERVTVIEGSFQNPGXLE 68 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHH----CCC-------EEEEEESSH----H--HHSCHHHHTSTTEEEEECCTTCHHHHH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhc----CCc-------eEEEEecCc----c--ccchhhccCCCceEEEECCCCCHHHHH
Confidence 35999996 88888888888732 353 688887741 1 011111 011111 112224577
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 011816 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++++ +|++|=+.+..+.-++.+++.|.+..-+-|||.=|
T Consensus 69 ~~~~~--~d~vv~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs 108 (221)
T 3r6d_A 69 QAVTN--AEVVFVGAMESGSDMASIVKALSRXNIRRVIGVSM 108 (221)
T ss_dssp HHHTT--CSEEEESCCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHcC--CCEEEEcCCCCChhHHHHHHHHHhcCCCeEEEEee
Confidence 88875 89999877654333788899998766567887533
No 220
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=81.45 E-value=3.1 Score=38.98 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||.|+|+|..|..+|..+... |. +++++|++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-----g~-------~V~~~~~~ 32 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRR-----GH-------YLIGVSRQ 32 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred EEEEEcCcHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 799999999999999988652 52 68888864
No 221
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=81.43 E-value=1.2 Score=42.39 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=50.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHHHhccc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~eav~~v 410 (477)
.||.|+|+|..|..+|..+... |. +++++|+.. +... .+++. .....++.|+++.
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~-----g~-------~V~~~~~~~-------~~~~----~~~~~g~~~~~~~~~~~~~- 60 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE-----GV-------TVYAFDLME-------ANVA----AVVAQGAQACENNQKVAAA- 60 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT-----TC-------EEEEECSSH-------HHHH----HHHTTTCEECSSHHHHHHH-
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------eEEEEeCCH-------HHHH----HHHHCCCeecCCHHHHHhC-
Confidence 5899999999999999988642 53 577777631 1011 11111 0112467777765
Q ss_pred CCcEEEeccCCCCCCCHHHHH---HHHc-CCCCcEEEEcCCCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIE---AMAS-FNEKPLILALSNPT 449 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~---~Ma~-~~erPIIFaLSNPt 449 (477)
+|++|=+.. ...-.++++. .+.. ..+..+|..+||-.
T Consensus 61 -~D~vi~~vp-~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 61 -SDIIFTSLP-NAGIVETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp -CSEEEECCS-SHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred -CCEEEEECC-CHHHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 777763322 1122344442 2221 23455666677644
No 222
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=80.96 E-value=1.3 Score=42.39 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=28.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..+|+|+|||.||+..|..+.+ .|. .++.++|+..
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~-----~g~------~~v~lie~~~ 38 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKD-----FGI------TDVIILEKGT 38 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH-----TTC------CCEEEECSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHH-----cCC------CcEEEEecCC
Confidence 35689999999999999999864 253 2799999874
No 223
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=80.84 E-value=1.4 Score=44.72 Aligned_cols=96 Identities=20% Similarity=0.318 Sum_probs=54.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-----------ccCCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----------EHEPV 400 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-----------~~~~~ 400 (477)
.||+|+|||-.|..+|+.|.+ .|- .-.++.++|++ .++ +......+.. +..+.
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~-----~g~----~~~~V~v~~r~----~~~---~~~la~~l~~~~~~~~~~~~~D~~d~ 65 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAM-----NRE----VFSHITLASRT----LSK---CQEIAQSIKAKGYGEIDITTVDADSI 65 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-----CTT----TCCEEEEEESC----HHH---HHHHHHHHHHTTCCCCEEEECCTTCH
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC----CceEEEEEECC----HHH---HHHHHHHhhhhcCCceEEEEecCCCH
Confidence 389999999777777777653 231 00478888874 111 2222222211 11122
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 401 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 401 ~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
.++.++++..++|++|=+++. .+..+++++..+. ..++| -+|+
T Consensus 66 ~~l~~~l~~~~~DvVin~ag~--~~~~~v~~a~l~~-g~~vv-D~a~ 108 (405)
T 4ina_A 66 EELVALINEVKPQIVLNIALP--YQDLTIMEACLRT-GVPYL-DTAN 108 (405)
T ss_dssp HHHHHHHHHHCCSEEEECSCG--GGHHHHHHHHHHH-TCCEE-ESSC
T ss_pred HHHHHHHHhhCCCEEEECCCc--ccChHHHHHHHHh-CCCEE-EecC
Confidence 468888888889999977653 2456666665443 34444 2544
No 224
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=80.68 E-value=1.3 Score=42.19 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-|+|+|||.||+..|..|.+ .|+ ++.++|++
T Consensus 6 DViIVGaGpaGl~~A~~La~-----~G~-------~V~v~Er~ 36 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAK-----YGL-------KTLMIEKR 36 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 48999999999999998875 375 46777764
No 225
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=80.64 E-value=3.3 Score=43.09 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=60.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch-hhc-cccCCCCCHHHHhcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWA-HEHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-~~a-~~~~~~~~L~eav~~ 409 (477)
.||.|+|+|..|..+|..|... |. +++++|+.. + .+....+ ... .......++.|+++.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~-----G~-------~V~v~dr~~----~---~~~~l~~~~~~g~gi~~~~~~~e~v~~ 63 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH-----GF-------VVCAFNRTV----S---KVDDFLANEAKGTKVLGAHSLEEMVSK 63 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSST----H---HHHHHHHTTTTTSSCEECSSHHHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHC-----CC-------eEEEEeCCH----H---HHHHHHhccccCCCeEEeCCHHHHHhh
Confidence 4799999999999999988753 53 577887631 1 1111111 000 000113578888863
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 410 I-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 410 v-kptvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
+ ++|++| ++...+...+++++.+...- +..||+-+||-.
T Consensus 64 l~~aDvVi-laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~ 104 (482)
T 2pgd_A 64 LKKPRRII-LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSE 104 (482)
T ss_dssp BCSSCEEE-ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred ccCCCEEE-EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 2 488877 44444446777887776433 456888898865
No 226
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=80.54 E-value=1.5 Score=40.40 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~-----g~-------~v~lie~~ 34 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRA-----RK-------NILLVDAG 34 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEECC
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----CC-------CEEEEeCC
Confidence 5899999999999999988652 53 68899963
No 227
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=80.19 E-value=2.1 Score=44.97 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|.+||..++.+ |. +++++|.+
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~a-----G~-------~V~l~D~~ 86 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLA-----GI-------ETFLVVRN 86 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEECc
Confidence 6899999999999999998763 54 67777763
No 228
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=80.09 E-value=4.7 Score=38.83 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=25.8
Q ss_pred ceEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+| +|..|..+|..+.. .|. +++++|+.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~-----~G~-------~V~~~~~~ 54 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRA-----SGY-------PISILDRE 54 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHT-----TTC-------CEEEECTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHh-----CCC-------eEEEEECC
Confidence 4899999 99999999998864 253 68888864
No 229
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=79.90 E-value=1.6 Score=42.58 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=28.4
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+++..+|+|+|||.||+..|..|.+ .|+ ++.++|+.-.
T Consensus 8 ~m~~~dVvIVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~~~ 45 (379)
T 3alj_A 8 PGKTRRAEVAGGGFAGLTAAIALKQ-----NGW-------DVRLHEKSSE 45 (379)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecCCC
Confidence 3456799999999999999998865 354 6888887543
No 230
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=79.80 E-value=2.6 Score=37.62 Aligned_cols=96 Identities=9% Similarity=0.134 Sum_probs=58.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~ 409 (477)
.||+|.|| |-.|..+++.|++ .| .++++++++.- +...+.. ...+.. +..+..++.+++++
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~~----~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~ 67 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALN-----RG-------FEVTAVVRHPE----KIKIENE-HLKVKKADVSSLDEVCEVCKG 67 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHT-----TT-------CEEEEECSCGG----GCCCCCT-TEEEECCCTTCHHHHHHHHTT
T ss_pred CEEEEEcCCchHHHHHHHHHHH-----CC-------CEEEEEEcCcc----cchhccC-ceEEEEecCCCHHHHHHHhcC
Confidence 58999996 8888888887764 24 37888888521 1111211 111111 22223457788886
Q ss_pred cCCcEEEeccCCCC----------CCCHHHHHHHHcCCCCcEEEEcC
Q 011816 410 IKPTILIGSSGVGR----------TFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 410 vkptvLIG~S~~~g----------~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+|++|=+.+... ..+..++++|.+..-+.+||.=|
T Consensus 68 --~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 68 --ADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp --CSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred --CCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999998765431 12556888888776667888443
No 231
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=79.66 E-value=1.6 Score=40.51 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+|||+|||.||+..|..+.+. |. ++.++|+.
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~-----g~-------~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARY-----ML-------KTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEESS
T ss_pred ccCEEEECccHHHHHHHHHHHHC-----CC-------cEEEEecc
Confidence 46899999999999999988652 53 58999997
No 232
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=79.65 E-value=1.6 Score=40.76 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|||+|||.||+..|..|.+ .|. ++.++|+..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~~ 40 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGM-----RQA-------SVKIIESLP 40 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSS
T ss_pred cceEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEEcCC
Confidence 3589999999999999988765 253 688999863
No 233
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=79.56 E-value=0.77 Score=39.19 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|+|+|+|..|..+|+.|.. .|. +++++|++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~-----~g~-------~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLA-----SDI-------PLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESC
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEECC
Confidence 478999999999999999865 253 68888874
No 234
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=79.55 E-value=4 Score=39.01 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=60.9
Q ss_pred CCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCC---CCCchhchhhcc-ccCCCC
Q 011816 327 GTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK---DSLQHFKKPWAH-EHEPVN 401 (477)
Q Consensus 327 ~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~---~~l~~~k~~~a~-~~~~~~ 401 (477)
++++..+|+|.|| |-.|..+++.|++ .| -+++++|+.. .... ..+. ...+.. +..+..
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~-----~g-------~~V~~~~r~~---~~~~~~~~~l~--~v~~~~~Dl~d~~ 78 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLP-----QG-------HEILVIDNFA---TGKREVLPPVA--GLSVIEGSVTDAG 78 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGG-----GT-------CEEEEEECCS---SSCGGGSCSCT--TEEEEECCTTCHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEECCC---ccchhhhhccC--CceEEEeeCCCHH
Confidence 4577889999998 8888888887754 24 3688888731 1100 1110 111111 112223
Q ss_pred CHHHHhcccCCcEEEeccCCCCC-------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRT-------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~-------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
++.++++.+++|++|=+.+.... -+..+++++.+..-+.|||.=|
T Consensus 79 ~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS 136 (330)
T 2pzm_A 79 LLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQT 136 (330)
T ss_dssp HHHHHHHHHCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHhhcCCCEEEECCccCCCccccChhHHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 57777875579999988875432 0345667776555567888544
No 235
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=79.55 E-value=1.6 Score=41.37 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|+|+|||.||+..|..+.+ .|. ++.++|++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~~ 38 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGM-----RGL-------SFRFVDPLP 38 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESSS
T ss_pred cCcEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEeCCC
Confidence 4689999999999999988754 253 688999864
No 236
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=79.34 E-value=7.8 Score=40.35 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=26.3
Q ss_pred HHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 323 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 323 r~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..++...-.||.|+|+|..|.++|..+.+ | -+++++|.+
T Consensus 28 ~~~~r~~~~mkIaVIGlG~mG~~lA~~La~------G-------~~V~~~D~~ 67 (432)
T 3pid_A 28 QQMGRGSEFMKITISGTGYVGLSNGVLIAQ------N-------HEVVALDIV 67 (432)
T ss_dssp -------CCCEEEEECCSHHHHHHHHHHHT------T-------SEEEEECSC
T ss_pred cccccccCCCEEEEECcCHHHHHHHHHHHc------C-------CeEEEEecC
Confidence 455666777899999999999999987642 4 367777764
No 237
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=78.89 E-value=2.7 Score=40.50 Aligned_cols=91 Identities=12% Similarity=0.222 Sum_probs=49.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
..||.|+|+|..|.++|..+... |. +++++|++ .++ ....++. ......++.|+++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~-----G~-------~V~~~dr~----~~~---~~~~~~~---g~~~~~~~~~~~~-- 70 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW-----PG-------GVTVYDIR----IEA---MTPLAEA---GATLADSVADVAA-- 70 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS-----TT-------CEEEECSS----TTT---SHHHHHT---TCEECSSHHHHTT--
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHC---CCEEcCCHHHHHh--
Confidence 35899999999999999988652 53 57778863 221 2221111 0111245666665
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 011816 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 447 (477)
Q Consensus 411 kptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 447 (477)
+|++| ++.......+++++.+.+. .+.-||.-+|+
T Consensus 71 -aDvvi-~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st 106 (296)
T 3qha_A 71 -ADLIH-ITVLDDAQVREVVGELAGHAKPGTVIAIHST 106 (296)
T ss_dssp -SSEEE-ECCSSHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred -CCEEE-EECCChHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 66665 2222122334555555432 23445555554
No 238
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=78.78 E-value=4.1 Score=37.88 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~ 352 (477)
||.|+|+|..|..+|..|..
T Consensus 2 ~I~iIG~G~mG~~la~~l~~ 21 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRS 21 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHH
T ss_pred eEEEEechHHHHHHHHHHHH
Confidence 79999999999999999875
No 239
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=78.77 E-value=2.5 Score=40.95 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=55.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc--hhhc-cccCCCCCHHHHhc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK--KPWA-HEHEPVNNLLDAVK 408 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k--~~~a-~~~~~~~~L~eav~ 408 (477)
.||.|+|||+-|..+|..|..+ | .+++++|+.-+ ..=+...+.-.. ..+. +...-..++.+ ++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-----g-------~~V~~~~r~~~-~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~ 68 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS-----G-------EDVHFLLRRDY-EAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IG 68 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT-----S-------CCEEEECSTTH-HHHHHTCEEEEETTCCEEESCCCEESCHHH-HC
T ss_pred CEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEEcCcH-HHHHhCCCEEEcCCCeEEEeeceeecCHHH-cC
Confidence 5899999999999999988653 4 36888887531 000000010000 0000 00000134443 44
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 011816 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 450 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 450 (477)
.+|++| ++..+ ...+++++.++.+ .+..+|+.+.|--.
T Consensus 69 --~~D~vi-lavk~-~~~~~~l~~l~~~l~~~~~iv~l~nGi~ 107 (312)
T 3hn2_A 69 --PMDLVL-VGLKT-FANSRYEELIRPLVEEGTQILTLQNGLG 107 (312)
T ss_dssp --CCSEEE-ECCCG-GGGGGHHHHHGGGCCTTCEEEECCSSSS
T ss_pred --CCCEEE-EecCC-CCcHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 378776 55544 3566788888753 34567777888763
No 240
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=78.75 E-value=4.5 Score=38.54 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=58.4
Q ss_pred CCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHH
Q 011816 327 GTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLL 404 (477)
Q Consensus 327 ~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~ 404 (477)
++++..+|+|.|| |-.|..+++.|++ .|. +++.+|+.. .. ... .+.. +..+..++.
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~-----~G~-------~V~~~~r~~----~~-~~~-----~~~~~Dl~d~~~~~ 72 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRT-----QGR-------TVRGFDLRP----SG-TGG-----EEVVGSLEDGQALS 72 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHH-----TTC-------CEEEEESSC----CS-SCC-----SEEESCTTCHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHh-----CCC-------EEEEEeCCC----CC-CCc-----cEEecCcCCHHHHH
Confidence 4577889999998 8999999988875 253 677777642 11 111 1111 222224577
Q ss_pred HHhcccCCcEEEeccCCCCCC--------------CHHHHHHHHcCCCCcEEEEcC
Q 011816 405 DAVKVIKPTILIGSSGVGRTF--------------TKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~F--------------t~evv~~Ma~~~erPIIFaLS 446 (477)
+++++ +|++|=+.+....- |..+++++.+..-+.|||.=|
T Consensus 73 ~~~~~--~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 73 DAIMG--VSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp HHHTT--CSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHhC--CCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 88884 99999877654211 345788888776678998655
No 241
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=78.66 E-value=11 Score=37.73 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=59.1
Q ss_pred CCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHH
Q 011816 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 326 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|+. .+ .......+ ...+|.|
T Consensus 136 ~~~l~g~tvGIiG~G~IG~~va~~~~~f-----g~-------~v~~~d~~-----~~----~~~~~~~~----~~~~l~e 190 (334)
T 3kb6_A 136 ARELNRLTLGVIGTGRIGSRVAMYGLAF-----GM-------KVLCYDVV-----KR----EDLKEKGC----VYTSLDE 190 (334)
T ss_dssp BCCGGGSEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSS-----CC----HHHHHTTC----EECCHHH
T ss_pred cceecCcEEEEECcchHHHHHHHhhccc-----Cc-------eeeecCCc-----cc----hhhhhcCc----eecCHHH
Confidence 4678899999999999999999988543 65 67777753 11 11111111 1246788
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 406 av~~vkptvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
.++. .|+++=.- ...+.|+++.++.|. +..++.=.|.
T Consensus 191 ll~~--sDivslh~Plt~~T~~li~~~~l~~mk---~~a~lIN~aR 231 (334)
T 3kb6_A 191 LLKE--SDVISLHVPYTKETHHMINEERISLMK---DGVYLINTAR 231 (334)
T ss_dssp HHHH--CSEEEECCCCCTTTTTCBCHHHHHHSC---TTEEEEECSC
T ss_pred HHhh--CCEEEEcCCCChhhccCcCHHHHhhcC---CCeEEEecCc
Confidence 8876 77776431 223688888888885 4556654443
No 242
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=78.64 E-value=1.3 Score=41.89 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|..+|..+... |. +++++|++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~-----g~-------~V~~~~~~ 37 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA-----GY-------SLVVSDRN 37 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred ceEEEECchHHHHHHHHHHHhC-----CC-------EEEEEeCC
Confidence 4899999999999999988652 42 57888763
No 243
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=78.18 E-value=0.73 Score=45.80 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-.||.|+|+|..|.+||..++.+ |. +++++|.+
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~-----G~-------~V~l~d~~ 38 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASG-----GF-------RVKLYDIE 38 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSC
T ss_pred CceEEEEeeCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 36899999999999999998763 64 57888864
No 244
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=78.12 E-value=1.5 Score=41.17 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+|||+|||.||+..|..|.+. |. ++.++|+.
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~-----g~-------~v~vie~~ 54 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARA-----EI-------KPILYEGM 54 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC-------CCEEECCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-----CC-------CEEEEecC
Confidence 46899999999999999998753 54 58888883
No 245
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=77.80 E-value=1.4 Score=46.01 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.|++.||+++|||..|..+|+.|+.+ |+ .+|.++|.+
T Consensus 36 ~~L~~~~VlvvG~GGlGs~va~~La~a-----Gv------g~i~ivD~D 73 (434)
T 1tt5_B 36 FLLDTCKVLVIGAGGLGCELLKNLALS-----GF------RQIHVIDMD 73 (434)
T ss_dssp HHHHTCCEEEECSSTHHHHHHHHHHHT-----TC------CCEEEEECC
T ss_pred HHhcCCEEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 345788999999999999999999874 75 699999976
No 246
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=77.63 E-value=2 Score=43.08 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=28.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
+.-||||+|||.||+..|..|. ..| .+|.++|+.--+
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~-----~~~-------~~itlie~~~~~ 44 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAAL-----GKC-------DDITMINSEKYL 44 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHT-----TTC-------SCEEEECSSSSC
T ss_pred CCCCEEEEcCcHHHHHHHHHHh-----CCC-------CEEEEEECCCCC
Confidence 3468999999999999999981 122 479999886544
No 247
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=77.58 E-value=2 Score=42.65 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=28.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++|||+|||.||+..|..|.+ .|.+ .+|.++|+..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~-----~g~~-----~~V~lie~~~ 36 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQ-----AKYP-----GRIALINDEK 36 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTCC-----SCEEEECCSS
T ss_pred CCEEEEcChHHHHHHHHHHHh-----hCcC-----CCEEEEeCCC
Confidence 589999999999999999865 3542 3799999875
No 248
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=77.38 E-value=1.7 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=27.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++..|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 3 ~~~dVvIvG~G~aGl~~A~~La~-----~G~-------~V~l~E~~~ 37 (397)
T 3cgv_A 3 ETYDVLVVGGGPGGSTAARYAAK-----YGL-------KTLMIEKRP 37 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSS
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEeCCC
Confidence 34679999999999999998875 364 577888765
No 249
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=77.36 E-value=2.1 Score=42.12 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=27.8
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+..+|+|+|||.||+..|-.|.+. |+ ++.++|+.-
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~-----G~-------~V~v~E~~~ 56 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQS-----GI-------DCDVYEAVK 56 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEEESSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CC-------CEEEEeCCC
Confidence 3457899999999999999988763 64 577888764
No 250
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=77.32 E-value=9 Score=36.90 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=61.6
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch-hchhhcc-ccC-CCCCH
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWAH-EHE-PVNNL 403 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~-~k~~~a~-~~~-~~~~L 403 (477)
++...||+|.|| |-.|..+++.|++. .| -+++.+|+.. .+...+.. .+..+.. +.. +..++
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~----~g-------~~V~~~~r~~----~~~~~~~~~~~v~~~~~Dl~~d~~~~ 85 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILET----TD-------WEVFGMDMQT----DRLGDLVKHERMHFFEGDITINKEWV 85 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHH----SS-------CEEEEEESCC----TTTGGGGGSTTEEEEECCTTTCHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhC----CC-------CEEEEEeCCh----hhhhhhccCCCeEEEeCccCCCHHHH
Confidence 466789999995 99999998888753 13 3788888742 11111111 1112222 112 22357
Q ss_pred HHHhcccCCcEEEeccCCCC----------------CCCHHHHHHHHcCCCCcEEEEcC
Q 011816 404 LDAVKVIKPTILIGSSGVGR----------------TFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g----------------~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.+++++ +|++|=+.+... .-|..+++++.+.. +.+||.=|
T Consensus 86 ~~~~~~--~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS 141 (372)
T 3slg_A 86 EYHVKK--CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPST 141 (372)
T ss_dssp HHHHHH--CSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECC
T ss_pred HHHhcc--CCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCc
Confidence 778885 999997666432 23467888888777 78998655
No 251
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=77.25 E-value=1.9 Score=40.85 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=27.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+|+|+|||.||+..|..+.+ .|. ++.++|+.
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 40 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGR-----AQL-------STLILEKG 40 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHH-----cCC-------cEEEEeCC
Confidence 4689999999999999988865 253 68899987
No 252
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=77.22 E-value=0.91 Score=41.37 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=52.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch----hhcc-ccCCCCCHHHH-
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK----PWAH-EHEPVNNLLDA- 406 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~----~~a~-~~~~~~~L~ea- 406 (477)
||+|+|+|..|..+|+.|... | .++.++|++ . +....... .+.. +......|.++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~-----g-------~~v~vid~~----~---~~~~~l~~~~~~~~i~gd~~~~~~l~~a~ 62 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSR-----K-------YGVVIINKD----R---ELCEEFAKKLKATIIHGDGSHKEILRDAE 62 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHT-----T-------CCEEEEESC----H---HHHHHHHHHSSSEEEESCTTSHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECC----H---HHHHHHHHHcCCeEEEcCCCCHHHHHhcC
Confidence 799999999999999988652 5 368888863 1 11111111 1111 11111235554
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEEcCCC
Q 011816 407 VKVIKPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNP 448 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNP 448 (477)
++ ++|++|-+.... .....+..+++ .+..+-|++.+|-
T Consensus 63 i~--~ad~vi~~~~~d--~~n~~~~~~a~~~~~~~~iia~~~~ 101 (218)
T 3l4b_C 63 VS--KNDVVVILTPRD--EVNLFIAQLVMKDFGVKRVVSLVND 101 (218)
T ss_dssp CC--TTCEEEECCSCH--HHHHHHHHHHHHTSCCCEEEECCCS
T ss_pred cc--cCCEEEEecCCc--HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 44 499999766543 22333444443 3566667776653
No 253
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=77.14 E-value=3.5 Score=41.20 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=29.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
.+|||+|||.||+..|..|.+ .|. ..+|.++|+..-.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~-----~g~-----~~~V~li~~~~~~ 39 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRA-----EGF-----EGRISLIGDEPHL 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEEECSSSS
T ss_pred CCEEEEcccHHHHHHHHHHHc-----cCc-----CCeEEEEECCCCC
Confidence 489999999999999998865 354 2469999886543
No 254
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=77.10 E-value=2.4 Score=41.69 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
...+|+|+|||.||+..|..|.+ .|+ ++.++|+.-
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~~ 38 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRD-----AGV-------DVDVYERSP 38 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecCC
Confidence 45789999999999999998875 364 577777653
No 255
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=77.04 E-value=1.9 Score=43.62 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=30.7
Q ss_pred hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 325 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 325 ~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
.++.-+..+|+|+|||.||+..|..|.+. | .++.++++..-
T Consensus 5 ~~~~~~~~~v~IIGaG~aGl~aA~~L~~~-----g-------~~v~v~E~~~~ 45 (489)
T 2jae_A 5 IGKVKGSHSVVVLGGGPAGLCSAFELQKA-----G-------YKVTVLEARTR 45 (489)
T ss_dssp CCCCCSCCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSSS
T ss_pred hhcccCCCCEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEeccCC
Confidence 34444567999999999999999988652 5 36777777643
No 256
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=76.82 E-value=2.1 Score=42.22 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=28.7
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+.+|+|+|||.||+..|..|.+ .|+ ++.++|+..
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~~ 59 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQ-----NGI-------DVSVYERDN 59 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHT-----TTC-------EEEEEECSS
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEeCCC
Confidence 345799999999999999998864 364 688888763
No 257
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}
Probab=78.48 E-value=0.5 Score=43.58 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=21.2
Q ss_pred CccceEEEeCcchHHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
+.+.||.|+|+|..|..+|..+...
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~ 41 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQC 41 (201)
Confidence 4567899999999999999988653
No 258
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=76.65 E-value=2.3 Score=40.22 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..|+|+|||.+|+.+|-.|.+ .|. ++.++|+.
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~-----~G~-------~V~vlE~~ 36 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAA-----GGH-------EVLVAEAA 36 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEeCC
Confidence 4589999999999999998875 364 68999987
No 259
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=76.38 E-value=3.6 Score=40.66 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=47.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc---------c
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---------H 397 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~---------~ 397 (477)
.--..++|+|+|||..|...+.+... .|. ++++.+|+. ..| ..+|+. .
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~-----~Ga------~~Vi~~~~~----~~~--------~~~a~~lGa~~vi~~~ 246 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKT-----AGA------SRIIGIDID----SKK--------YETAKKFGVNEFVNPK 246 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHH-----HTC------SCEEEECSC----TTH--------HHHHHTTTCCEEECGG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEcCC----HHH--------HHHHHHcCCcEEEccc
Confidence 33457899999999888877766543 253 578888752 111 122221 1
Q ss_pred CCCCCHHHHhccc---CCcEEEeccCCCCCCCHHHHHHHH
Q 011816 398 EPVNNLLDAVKVI---KPTILIGSSGVGRTFTKEVIEAMA 434 (477)
Q Consensus 398 ~~~~~L~eav~~v---kptvLIG~S~~~g~Ft~evv~~Ma 434 (477)
+...++.+.++.. ++|++|=+++.+ ..-++.++.++
T Consensus 247 ~~~~~~~~~i~~~~~gg~D~vid~~g~~-~~~~~~~~~l~ 285 (378)
T 3uko_A 247 DHDKPIQEVIVDLTDGGVDYSFECIGNV-SVMRAALECCH 285 (378)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCH-HHHHHHHHTBC
T ss_pred cCchhHHHHHHHhcCCCCCEEEECCCCH-HHHHHHHHHhh
Confidence 1123455555432 689999877743 12234444443
No 260
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=76.31 E-value=2.4 Score=40.84 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=27.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|||+|||.||+..|..+.+ .|+ ++.++|+..
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~~ 47 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGM-----NNI-------SCRIIESMP 47 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecCC
Confidence 5789999999999999988754 253 688999864
No 261
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=76.29 E-value=2.2 Score=41.85 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=28.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+.+|+|+|||.||+..|..|.+ .|+ ++.++|+..-
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~-----~G~-------~V~viE~~~~ 40 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGR-----QGH-------RVVVVEQARR 40 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEeCCCC
Confidence 4689999999999999998865 364 5888887643
No 262
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=76.26 E-value=2.3 Score=40.92 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=28.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+..|||+|||.+|+.+|..|.+ .|+ ++.++|+..+
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~-----~G~-------~V~llE~~~~ 51 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAK-----ENK-------NTALFESGTM 51 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEeCCCC
Confidence 4689999999999999999875 253 6999998643
No 263
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=76.15 E-value=2.2 Score=40.17 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+|+|+|||.||+..|..+.+ .|. ++.++|+.
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 48 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAAR-----SGF-------SVAILDKA 48 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESS
T ss_pred CCcEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEeCC
Confidence 4689999999999999988865 253 68899975
No 264
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=76.02 E-value=1.7 Score=47.75 Aligned_cols=37 Identities=30% Similarity=0.429 Sum_probs=33.0
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 14 kL~~s~VlVVGaGGLGsevak~La~a-----GV------G~ItlvD~D 50 (640)
T 1y8q_B 14 AVAGGRVLVVGAGGIGCELLKNLVLT-----GF------SHIDLIDLD 50 (640)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHH-----TC------CEEEEEECC
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 57789999999999999999999875 75 699999987
No 265
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=76.01 E-value=2 Score=43.30 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+||||+|||.||+..|..|.+. +- .-+|.++|++
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~-----~~-----~~~VtlI~~~ 36 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNL-----MP-----DLKITLISDR 36 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-----CT-----TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHhcc-----Cc-----CCeEEEEcCC
Confidence 4799999999999999998653 21 1368888876
No 266
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=75.96 E-value=2.4 Score=39.31 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=25.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEE-EccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL-VDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~l-vD~~ 375 (477)
..+|||+|||.||+..|..|... |. ++.+ +|+.
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~-----g~-------~v~li~e~~ 37 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRG-----GL-------KNVVMFEKG 37 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-----TC-------SCEEEECSS
T ss_pred CceEEEECCCHHHHHHHHHHHHC-----CC-------CeEEEEeCC
Confidence 35899999999999999988763 53 4556 8873
No 267
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=75.84 E-value=2.2 Score=41.10 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=26.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..||.|+|+|..|.++|..|... |. +++++|+.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~-----G~-------~V~~~dr~ 39 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA-----GL-------STWGADLN 39 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEECC
Confidence 35899999999999999998763 53 67778864
No 268
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=75.82 E-value=1.2 Score=43.08 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=59.3
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc---hh---chhhcc-ccCC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---HF---KKPWAH-EHEP 399 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~---~~---k~~~a~-~~~~ 399 (477)
+++..+|+|.|| |-.|-.|++.|++. | .+++.+++..- .....+. .. ...+.. +..+
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~-----g-------~~V~~l~R~~~---~~~~~~~~~~~l~~~~v~~~~~Dl~d 71 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDA-----H-------RPTYILARPGP---RSPSKAKIFKALEDKGAIIVYGLINE 71 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHT-----T-------CCEEEEECSSC---CCHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHC-----C-------CCEEEEECCCC---CChhHHHHHHHHHhCCcEEEEeecCC
Confidence 345678999999 99999999888652 4 36888877520 0000010 00 001111 1122
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCC-CCcEEE
Q 011816 400 VNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFN-EKPLIL 443 (477)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~-Ft~evv~~Ma~~~-erPIIF 443 (477)
..+|.++++..++|++|=+.+..+. -+..+++++.+.. -+-+|+
T Consensus 72 ~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~ 117 (346)
T 3i6i_A 72 QEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLP 117 (346)
T ss_dssp HHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred HHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEee
Confidence 2468888886669999988775432 3678899988765 445554
No 269
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=75.74 E-value=3.2 Score=40.68 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=28.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+.+|||+|||.||+..|-.|.+ .|+ ++.++|+.-.
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~-----~G~-------~V~v~E~~~~ 39 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNK-----SGF-------KVKIVEKQKF 39 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT-----TTC-------CEEEECSSCS
T ss_pred cCcEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEeCCCC
Confidence 4689999999999999988764 364 6889998743
No 270
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=75.71 E-value=8.5 Score=34.58 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=58.3
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHH
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~ea 406 (477)
++..+++|.|| |-.|..+++.|++. |. ..+++++|++. ++...+......+.. +..+..++.++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~-----G~-----~~~V~~~~r~~----~~~~~~~~~~~~~~~~D~~d~~~~~~~ 81 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQ-----GL-----FSKVTLIGRRK----LTFDEEAYKNVNQEVVDFEKLDDYASA 81 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHH-----TC-----CSEEEEEESSC----CCCCSGGGGGCEEEECCGGGGGGGGGG
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcC-----CC-----CCEEEEEEcCC----CCccccccCCceEEecCcCCHHHHHHH
Confidence 44578999995 77888888887653 42 12788888752 111111111111111 11222456677
Q ss_pred hcccCCcEEEeccCCCCC-------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 407 VKVIKPTILIGSSGVGRT-------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~-------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
++. +|++|=+.+.... -+..+++.|.+...+.|||.=|
T Consensus 82 ~~~--~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS 132 (242)
T 2bka_A 82 FQG--HDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS 132 (242)
T ss_dssp GSS--CSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred hcC--CCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 764 9999988775310 1346677777655566777544
No 271
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=75.53 E-value=2.4 Score=39.94 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..|+|+|||.+|+.+|..|.+ .|+ ++.++|+.-
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~-----~G~-------~V~vlE~~~ 35 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTA-----AGH-------QVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHH-----CCC-------cEEEEECCC
Confidence 479999999999999999875 364 588888763
No 272
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=75.48 E-value=2.4 Score=42.21 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=29.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
...+|||+|||.||+..|..|.+. |.+ .+|.++|+..-
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~-----g~~-----~~V~lie~~~~ 45 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQN-----GFE-----GRVLVIGREPE 45 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-----TCC-----SCEEEEESSSS
T ss_pred CCCcEEEECChHHHHHHHHHHHcc-----CcC-----CCEEEEecCCC
Confidence 357899999999999999998653 542 36889988643
No 273
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=75.23 E-value=8.3 Score=36.80 Aligned_cols=104 Identities=14% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch-hchhhcc-ccCCCCCHH
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWAH-EHEPVNNLL 404 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~-~k~~~a~-~~~~~~~L~ 404 (477)
.++..+|+|.|| |-.|..+++.|++ .| -+++.+|+.. ....+.+.. .+..+.. +..+..++.
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~---~~~~~~l~~~~~~~~~~~Dl~d~~~~~ 82 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLE-----RG-------DKVVGIDNFA---TGRREHLKDHPNLTFVEGSIADHALVN 82 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEEECCS---SCCGGGSCCCTTEEEEECCTTCHHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHH-----CC-------CEEEEEECCC---ccchhhHhhcCCceEEEEeCCCHHHHH
Confidence 355678999985 8888888888765 25 3688888742 111111211 0111111 112223577
Q ss_pred HHhcccCCcEEEeccCCCCC-------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 405 DAVKVIKPTILIGSSGVGRT-------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~-------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++++.++|++|=+.+.... -+..+++++.+..-+.|||.=|
T Consensus 83 ~~~~~~~~D~vih~A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS 137 (333)
T 2q1w_A 83 QLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQT 137 (333)
T ss_dssp HHHHHHCCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHhccCCcEEEECceecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 78877789999988775432 1345677776655567888543
No 274
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=75.09 E-value=2.8 Score=36.27 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+++|+|+|.+|+..|..+... | .++.++|+.
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~-----g-------~~v~lie~~ 33 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARA-----G-------LKVLVLDGG 33 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-----T-------CCEEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeCC
Confidence 3799999999999999888652 5 378888875
No 275
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=75.08 E-value=1.4 Score=44.54 Aligned_cols=91 Identities=23% Similarity=0.281 Sum_probs=55.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc-c--ccCCCCCHHHHh
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-H--EHEPVNNLLDAV 407 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a-~--~~~~~~~L~eav 407 (477)
+.||+|+|||-+|-.+|+.|.+. .++.++|+. .++ +......+. . +..+..+|.+++
T Consensus 16 ~~~v~IiGaG~iG~~ia~~L~~~-------------~~V~V~~R~----~~~---a~~la~~~~~~~~d~~~~~~l~~ll 75 (365)
T 2z2v_A 16 HMKVLILGAGNIGRAIAWDLKDE-------------FDVYIGDVN----NEN---LEKVKEFATPLKVDASNFDKLVEVM 75 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTT-------------SEEEEEESC----HHH---HHHHTTTSEEEECCTTCHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHcC-------------CeEEEEECC----HHH---HHHHHhhCCeEEEecCCHHHHHHHH
Confidence 57999999999999999887531 367788773 111 211111121 0 111224688888
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
++ +|++|-+.. . .+..+++++-.+ ..-.++-+|.
T Consensus 76 ~~--~DvVIn~~P-~-~~~~~v~~a~l~--~G~~~vD~s~ 109 (365)
T 2z2v_A 76 KE--FELVIGALP-G-FLGFKSIKAAIK--SKVDMVDVSF 109 (365)
T ss_dssp TT--CSCEEECCC-H-HHHHHHHHHHHH--TTCCEEECCC
T ss_pred hC--CCEEEECCC-h-hhhHHHHHHHHH--hCCeEEEccC
Confidence 86 999997632 2 356667665443 2334566776
No 276
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=74.93 E-value=7.7 Score=38.95 Aligned_cols=96 Identities=22% Similarity=0.369 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch
Q 011816 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (477)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~ 388 (477)
-.-+|-.|++--|+-.+.+|+..++|++|.+. .|.-+|.||.. .|. .+.+|.|+
T Consensus 158 ~~PcTp~gv~~lL~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~-----~~A-------TVTi~Hs~------------- 212 (303)
T 4b4u_A 158 YGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQ-----ANA-------TVTICHSR------------- 212 (303)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHH-----TTC-------EEEEECTT-------------
T ss_pred ccCccHHHHHHHHHHHCCCCCCCEEEEEeccccccchHHHHHHh-----cCC-------EEEEecCC-------------
Confidence 34567789999999999999999999999765 57777777654 243 35555432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CCC
Q 011816 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPT 449 (477)
Q Consensus 389 ~k~~~a~~~~~~~~L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt 449 (477)
..+|.+.++. +|++|...+.++.++.++|| +..+|.=.. |+.
T Consensus 213 -----------T~dl~~~~~~--ADIvV~A~G~p~~i~~d~vk------~GavVIDVGin~~ 255 (303)
T 4b4u_A 213 -----------TQNLPELVKQ--ADIIVGAVGKAELIQKDWIK------QGAVVVDAGFHPR 255 (303)
T ss_dssp -----------CSSHHHHHHT--CSEEEECSCSTTCBCGGGSC------TTCEEEECCCBCC
T ss_pred -----------CCCHHHHhhc--CCeEEeccCCCCcccccccc------CCCEEEEeceecC
Confidence 1358888887 99999999999999999996 455666443 554
No 277
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=74.81 E-value=2.5 Score=40.78 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=28.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|||+|||.+|+.+|..|.+ .|. ++.++|+..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~-----~G~-------~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAK-----RGE-------EVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCCC
Confidence 4689999999999999999875 253 699999874
No 278
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=74.77 E-value=3 Score=40.41 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.9
Q ss_pred cceEEEeCcchHHHHHHHHHHH-HHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIAL-EISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~-~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|+|+|||.+|+.+|-.|.+ . | ..++.++|+..
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~-----G------~~~V~vlE~~~ 56 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNH-----G------ITNVAVLEKGW 56 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHH-----C------CCCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHhc-----C------CCcEEEEeCCC
Confidence 5689999999999999999876 3 5 13799999875
No 279
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=74.54 E-value=2.7 Score=41.55 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|||+|||.||+..|..|.+..- .| .+|.++|+.-
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~--~g-------~~V~vie~~~ 37 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVG--SK-------ADVKVINKSR 37 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHG--GG-------SEEEEEESSS
T ss_pred CeEEEECCCHHHHHHHHHHHhhCC--CC-------CeEEEEeCCC
Confidence 479999999999999999876211 13 4788888765
No 280
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=74.44 E-value=8.8 Score=40.52 Aligned_cols=66 Identities=26% Similarity=0.223 Sum_probs=47.0
Q ss_pred CCCceeccCCC---chHHHHHHHHHHHHHH------------------hCCCCccceEEEeCcchHHHHHHHHHHHHHHh
Q 011816 298 TTHLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (477)
Q Consensus 298 ~~~~~FnDDiQ---GTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 356 (477)
..+.|.|---- .+|=-++|.+++..|- .|..|...++.|+|.|..|..+|+.+..
T Consensus 88 ~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~---- 163 (529)
T 1ygy_A 88 RGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAA---- 163 (529)
T ss_dssp TTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHT----
T ss_pred CCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHHHHHHHHHHh----
Confidence 45666664332 2344577888876653 2567889999999999999999998864
Q ss_pred hCCCChhhhcCeEEEEccC
Q 011816 357 QTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD~~ 375 (477)
.|+ +++.+|+.
T Consensus 164 -~G~-------~V~~~d~~ 174 (529)
T 1ygy_A 164 -FGA-------YVVAYDPY 174 (529)
T ss_dssp -TTC-------EEEEECTT
T ss_pred -CCC-------EEEEECCC
Confidence 253 68888864
No 281
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=74.29 E-value=6.5 Score=37.02 Aligned_cols=101 Identities=15% Similarity=0.240 Sum_probs=57.8
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC--CCchh----chhhcc-ccCCCC
Q 011816 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHF----KKPWAH-EHEPVN 401 (477)
Q Consensus 330 ~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~--~l~~~----k~~~a~-~~~~~~ 401 (477)
++.+|+|.|| |-.|..+++.|++ .| -+++.+|++. .... .+... +..+.. +..+..
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~-----~G-------~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 65 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLE-----KG-------YEVYGADRRS----GEFASWRLKELGIENDVKIIHMDLLEFS 65 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEECSCC----STTTTHHHHHTTCTTTEEECCCCTTCHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEECCC----cccccccHhhccccCceeEEECCCCCHH
Confidence 4578999998 8888888888765 25 3688888742 1100 00000 011111 111223
Q ss_pred CHHHHhcccCCcEEEeccCCCCC------C----------CHHHHHHHHcCCC-CcEEEEcC
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRT------F----------TKEVIEAMASFNE-KPLILALS 446 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~------F----------t~evv~~Ma~~~e-rPIIFaLS 446 (477)
++.++++.+++|++|=+.+.... + |..+++++.+... +.|||.=|
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 127 (345)
T 2z1m_A 66 NIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAST 127 (345)
T ss_dssp HHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEec
Confidence 57788888789999988875421 0 3345555554443 67888644
No 282
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=74.26 E-value=2.9 Score=41.13 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+|||+|||.||+..|..|.+. |. ++.++++..
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~-----G~-------~V~vlE~~~ 34 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNA-----GK-------KVLLLEGGE 34 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHT-----TC-------CEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHHc-----CC-------eEEEEecCC
Confidence 699999999999999998763 53 688888753
No 283
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=74.02 E-value=1.9 Score=40.44 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=26.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|+|+|||.||+..|..+.+ .|. ++.++|+.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 37 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAAR-----ANL-------QPVLITGM 37 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHT-----TTC-------CCEEECCS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEccC
Confidence 45689999999999999998864 253 56778853
No 284
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=73.96 E-value=3.1 Score=40.54 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|+|+|||.||+..|-.|.+. |+ ++.++|+.-
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~v~E~~~ 35 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKA-----GI-------DNVILERQT 35 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-----TC-------CEEEECSSC
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEeCCC
Confidence 4799999999999999988764 64 577888654
No 285
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=73.92 E-value=3.1 Score=41.52 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
..+++..|||+|||.+|+.+|-.|.+. | ..++.++|+
T Consensus 19 ~~m~~~dVvIIGgGiaGls~A~~La~~-----G------~~~V~vlE~ 55 (448)
T 3axb_A 19 SHMPRFDYVVVGAGVVGLAAAYYLKVW-----S------GGSVLVVDA 55 (448)
T ss_dssp --CCEEEEEEECCSHHHHHHHHHHHHH-----H------CSCEEEEES
T ss_pred ccCCcCCEEEECcCHHHHHHHHHHHhC-----C------CCcEEEEcc
Confidence 345677999999999999999988764 3 147999998
No 286
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=73.89 E-value=9.1 Score=35.97 Aligned_cols=93 Identities=12% Similarity=0.203 Sum_probs=58.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~ 409 (477)
.||+|.|| |-.|..+++.|++. | -+++.+++. .+... +. ...+.. +.. ..++.++++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~-----g-------~~V~~~~r~----~~~~~-~~--~~~~~~~Dl~-~~~~~~~~~- 61 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND-----G-------NTPIILTRS----IGNKA-IN--DYEYRVSDYT-LEDLINQLN- 61 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-----T-------CEEEEEESC----CC--------CCEEEECCCC-HHHHHHHTT-
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-----C-------CEEEEEeCC----CCccc-CC--ceEEEEcccc-HHHHHHhhc-
Confidence 58999995 88999998888752 4 368888885 22211 22 111211 222 345777777
Q ss_pred cCCcEEEeccCCCCC------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 410 IKPTILIGSSGVGRT------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 410 vkptvLIG~S~~~g~------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
++|++|=+.+..+. -+..+++++.+..-+.+||.=|
T Consensus 62 -~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS 109 (311)
T 3m2p_A 62 -DVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST 109 (311)
T ss_dssp -TCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred -CCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 59999988775432 1467888887766666888543
No 287
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=73.85 E-value=2.8 Score=41.44 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=27.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.+|+|+|||.||+..|..|.+ .|+ +++.++|+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~-----~G~------~~v~v~E~~~ 38 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQ-----AGI------GKVTLLESSS 38 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEECCC
Confidence 4689999999999999998865 365 2377777653
No 288
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=73.67 E-value=2.9 Score=40.26 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=28.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
+..|||+|||.+|+.+|-.|.+. |. ++.++|+....
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~-----G~-------~V~vie~~~~~ 38 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQ-----GV-------KTLLVDAFDPP 38 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSCSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeCCCCC
Confidence 35799999999999999988752 53 69999987543
No 289
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=73.33 E-value=2.9 Score=40.12 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=28.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
..|+|+|||.+|+.+|-.|.+. |+ ++.++|+....
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~-----G~-------~V~vle~~~~~ 37 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRA-----GL-------NVLMTDAHMPP 37 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHT-----TC-------CEEEECSSCSS
T ss_pred CCEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 4799999999999999988753 53 68999987543
No 290
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=73.26 E-value=3.4 Score=38.72 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
||.|+|+|..|..+|..+.. |. +++++|+
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~------g~-------~V~~~~~ 31 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR------RF-------PTLVWNR 31 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT------TS-------CEEEECS
T ss_pred eEEEEcccHHHHHHHHHHhC------CC-------eEEEEeC
Confidence 79999999999999988742 42 4777776
No 291
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=72.90 E-value=3.4 Score=42.61 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=28.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
...+|+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~-----G~-------~V~v~e~~~ 155 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAK-----GY-------EVHVYDRYD 155 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHH-----TC-------CEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeccC
Confidence 357899999999999999998763 53 588998853
No 292
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=72.58 E-value=3.3 Score=41.95 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=27.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+|||+|||.||+..|..+.+ .| .++.++|+.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~-----~g-------~~V~lie~~ 36 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVE-----QG-------AQVTLIERG 36 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 4689999999999999988765 25 379999986
No 293
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=72.50 E-value=3 Score=42.64 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=28.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|+|+|||.||+..|..+.+.. ..|++ ..++.++|+..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~--~~G~~----~~~V~v~E~~~ 41 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQ--EKGAE----IPELVCFEKQA 41 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHH--HTTCC----CCEEEEECSSS
T ss_pred CcEEEECccHHHHHHHHHHHhhh--hcCCC----CCcEEEEEcCC
Confidence 48999999999999999987632 13542 01388998863
No 294
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=72.49 E-value=2.6 Score=39.82 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=27.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
...+|+|+|||.||+..|..|.+. |. ++.++|+
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~~-----g~-------~v~lie~ 39 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARA-----EL-------KPLLFEG 39 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT-----TC-------CCEEECC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEec
Confidence 456899999999999999988652 53 5788887
No 295
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=72.37 E-value=3.2 Score=40.47 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=29.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
+..|||+|||.+|+.+|-.|.+ .|. ++.++|+....
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~-----~G~-------~V~vlE~~~~~ 39 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAE-----RGH-------RVLVLERHTFF 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCCCCC
Confidence 3579999999999999998875 364 68999987654
No 296
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=72.36 E-value=4.7 Score=43.14 Aligned_cols=37 Identities=11% Similarity=0.286 Sum_probs=30.5
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+++.+|||+|||.||+..|-.|.+ .|+ ++.++|+.-.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar-----~G~-------~V~LiEr~~~ 57 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHK-----LGH-------DVTIYERSAF 57 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSSCS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHc-----CCC-------CEEEEcCCCC
Confidence 567899999999999999988865 364 7999999844
No 297
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=72.32 E-value=5.8 Score=36.50 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHH
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLD 405 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~e 405 (477)
.++..+|+|.|| |-.|..+++.|++ .|. +.. .......+.. +..+..++.+
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~-----~g~---------------------~~~-~~~~~~~~~~~D~~d~~~~~~ 55 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVAD-----GAG---------------------LPG-EDWVFVSSKDADLTDTAQTRA 55 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHT-----TTC---------------------CTT-CEEEECCTTTCCTTSHHHHHH
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHh-----cCC---------------------ccc-ccccccCceecccCCHHHHHH
Confidence 366789999996 8889888888765 243 000 0000000111 1111235788
Q ss_pred HhcccCCcEEEeccCCCCC-----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 406 AVKVIKPTILIGSSGVGRT-----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~-----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++..++|++|=+.+..+. -|..+++++.+..-+.+||.=|
T Consensus 56 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS 113 (319)
T 4b8w_A 56 LFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLS 113 (319)
T ss_dssp HHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence 8888889999988776431 1234688887766667888544
No 298
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=72.31 E-value=3.2 Score=42.15 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=27.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
..+|||+|||.||+..|..|.+.- .| .+|.++|+..-
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~---~g-------~~Vtvie~~~~ 39 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLD---PE-------AHVTMIDQASR 39 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHC---TT-------SEEEEECCC--
T ss_pred CCcEEEECCCHHHHHHHHHHHhhC---cC-------CCEEEEECCCc
Confidence 468999999999999999887530 12 47889988754
No 299
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=72.14 E-value=3.6 Score=34.44 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=26.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..+|+|+|+|..|..+|+.|.. .|. +++++|++
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~-----~g~-------~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTA-----AGK-------KVLAVDKS 38 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEECC
Confidence 34689999999999999998875 253 68888873
No 300
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=72.04 E-value=11 Score=38.06 Aligned_cols=175 Identities=9% Similarity=0.059 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhC------CCCccce
Q 011816 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIG------GTLAEHR 333 (477)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alr~~g------~~l~d~r 333 (477)
+...++ +-.+| .++ |-+--++ +.+.+.+.+|- ++||.| || +-=-.=+||=++.-.+..| ++++..|
T Consensus 90 l~DTar-vls~~-~D~-iviR~~~-~~~~~~lA~~~-~vPVINag~~-~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~ 163 (328)
T 3grf_A 90 VQDTAE-VFSRM-VDI-CTARLAT-KEMMREMAQHA-SVPCINALDD-FGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIK 163 (328)
T ss_dssp HHHHHH-HHTTT-CSE-EEEECSS-HHHHHHHHHHC-SSCEEESSCS-SCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCC
T ss_pred HHHHHH-HHHhh-CCE-EEEecCC-hhHHHHHHHhC-CCCEEeCCCC-CCCcHHHHHHHHHHHHHhCCccccccccCCcE
Confidence 334444 33456 443 3355554 34555666664 689998 55 3444556777777666666 3799999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc---c---CCCCCHHHHh
Q 011816 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---H---EPVNNLLDAV 407 (477)
Q Consensus 334 iv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~---~---~~~~~L~eav 407 (477)
|+++|-+. + .+|+-++.++.+ .|+ +|.++-.+|+..+-..+ +...-+.+|.. . ....++.|||
T Consensus 164 va~vGD~~-~-~va~Sl~~~~~~-~G~-------~v~~~~P~~~~~~p~~~-~~~~~~~~~~~~~~g~~v~~~~d~~eav 232 (328)
T 3grf_A 164 FAYCGDSM-N-NVTYDLMRGCAL-LGM-------ECHVCCPDHKDFKPIKE-VIDECEEIIAKHGTGGSIKIFHDCKKGC 232 (328)
T ss_dssp EEEESCCS-S-HHHHHHHHHHHH-HTC-------EEEEECCSSGGGSCCHH-HHHHHHHHHHHHTCCCEEEEESSHHHHH
T ss_pred EEEeCCCC-c-chHHHHHHHHHH-cCC-------EEEEECChHhhhCCCHH-HHHHHHHHHhhccCCCeEEEEcCHHHHh
Confidence 99999985 2 478877777766 475 78999888885321111 21222233322 1 1236899999
Q ss_pred cccCCcEEEec---c-C-CC------------CCCCHHHHHHHHcCCCCcEEEEcCCC-CCCCCCCHHHH
Q 011816 408 KVIKPTILIGS---S-G-VG------------RTFTKEVIEAMASFNEKPLILALSNP-TSQSECTAEEA 459 (477)
Q Consensus 408 ~~vkptvLIG~---S-~-~~------------g~Ft~evv~~Ma~~~erPIIFaLSNP-t~~~E~tpe~A 459 (477)
++ +||+.-- | + +. =.+|++.++.+ .+.-||+-.- | ...-|++.|-.
T Consensus 233 ~~--aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a---~~~ai~mH~l-Pa~Rg~EI~~eV~ 296 (328)
T 3grf_A 233 EG--VDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVT---SKRSIFMNCL-PATRGEEQTASVI 296 (328)
T ss_dssp TT--CSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTS---CTTCEEEECS-CCCTTTTBCHHHH
T ss_pred cC--CCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhc---CCCCEEECCC-CCCCCCccCHHHh
Confidence 98 9999732 1 1 11 02456655543 2555666321 3 12268887644
No 301
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=71.98 E-value=9.4 Score=33.69 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCCccceEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 314 VLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.++..+.++.....--..++++|.| +|..|..+++++... |. +++.+|++
T Consensus 22 ~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-----G~-------~V~~~~~~ 72 (198)
T 1pqw_A 22 AYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-----GA-------RIYTTAGS 72 (198)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-----TC-------EEEEEESS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHc-----CC-------EEEEEeCC
Confidence 4444455554333334568999999 588888888776542 52 57877763
No 302
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=71.91 E-value=6.1 Score=35.93 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=59.0
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHH
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 406 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~ea 406 (477)
..-.+|+|.|| |-.|..+++.|++ .| .-++++++++. ++...+......+.. +..+..++.++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~-----~G------~~~V~~~~R~~----~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 85 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLAD-----KQ------TIKQTLFARQP----AKIHKPYPTNSQIIMGDVLNHAALKQA 85 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTT-----CT------TEEEEEEESSG----GGSCSSCCTTEEEEECCTTCHHHHHHH
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHh-----CC------CceEEEEEcCh----hhhcccccCCcEEEEecCCCHHHHHHH
Confidence 34468999995 7788888887754 24 13677777642 111111111111111 22222457788
Q ss_pred hcccCCcEEEeccCCCCC--CCHHHHHHHHcCCCCcEEEEcC
Q 011816 407 VKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~--Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++ .|++|=..+.... -++.+++.|.+..-+-|||.=|
T Consensus 86 ~~~--~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 86 MQG--QDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp HTT--CSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred hcC--CCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEEec
Confidence 886 7999966654332 2567889998766667888554
No 303
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=71.87 E-value=3.9 Score=39.40 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=27.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|||+|||.+|+.+|-.|.+ .| .++.++|+..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~-----~G-------~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILAR-----KG-------YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEeccC
Confidence 4689999999999999998854 25 3799999864
No 304
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=71.81 E-value=5.6 Score=37.42 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=44.5
Q ss_pred CCccceEEEeCc-ch--HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc------ccC
Q 011816 328 TLAEHRFLFLGA-GE--AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH------EHE 398 (477)
Q Consensus 328 ~l~d~riv~~GA-Gs--Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~------~~~ 398 (477)
.+++.++||.|| |. .|.++|+.+++ .|. +++++|+.- ..+.+...++.+.+ +..
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~-----~G~-------~V~~~~r~~-----~~~~~~~l~~~~~~~~~~~~Dl~ 85 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHR-----EGA-------ELAFTYVGQ-----FKDRVEKLCAEFNPAAVLPCDVI 85 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHH-----TTC-------EEEEEECTT-----CHHHHHHHHGGGCCSEEEECCTT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHH-----cCC-------EEEEeeCch-----HHHHHHHHHHhcCCceEEEeecC
Confidence 477889999997 34 66677777764 353 688888853 00111111111111 111
Q ss_pred CCCCHHHHhccc-----CCcEEEeccCCC
Q 011816 399 PVNNLLDAVKVI-----KPTILIGSSGVG 422 (477)
Q Consensus 399 ~~~~L~eav~~v-----kptvLIG~S~~~ 422 (477)
+..++.++++.+ ++|+||=..+..
T Consensus 86 ~~~~v~~~~~~~~~~~g~id~li~nAg~~ 114 (280)
T 3nrc_A 86 SDQEIKDLFVELGKVWDGLDAIVHSIAFA 114 (280)
T ss_dssp CHHHHHHHHHHHHHHCSSCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 223455555554 789999877764
No 305
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=71.72 E-value=5.6 Score=38.95 Aligned_cols=117 Identities=13% Similarity=0.084 Sum_probs=60.9
Q ss_pred ccceEEEeCcchHHHHH-HHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-----c-CCCCC
Q 011816 330 AEHRFLFLGAGEAGTGI-AELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----H-EPVNN 402 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gi-a~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-----~-~~~~~ 402 (477)
+.++|+|+|||+.|... +.+...+ .|. ++++.+|+. .+ ++++..+++. . ....+
T Consensus 172 ~~~~VlV~GaG~vG~~a~iqla~k~----~Ga------~~Vi~~~~~----~~-----~~~~~~~~~~lGa~~v~~~~~~ 232 (357)
T 2b5w_A 172 DPSSAFVLGNGSLGLLTLAMLKVDD----KGY------ENLYCLGRR----DR-----PDPTIDIIEELDATYVDSRQTP 232 (357)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHCT----TCC------CEEEEEECC----CS-----SCHHHHHHHHTTCEEEETTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHH----cCC------cEEEEEeCC----cc-----cHHHHHHHHHcCCcccCCCccC
Confidence 33899999999888777 5554132 363 458888863 21 0112222221 0 01123
Q ss_pred ---HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHHHh--cccCCcEEEEc
Q 011816 403 ---LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEAY--TWSKVQTIILQ 471 (477)
Q Consensus 403 ---L~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tpe~A~--~~t~G~aifAs 471 (477)
+.+. .+ +.|++|=+++.. ...++.++.|+. .=.|.-+..+. ...+..+.... .+.++.-|+.+
T Consensus 233 ~~~i~~~-~g-g~Dvvid~~g~~-~~~~~~~~~l~~---~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~ 301 (357)
T 2b5w_A 233 VEDVPDV-YE-QMDFIYEATGFP-KHAIQSVQALAP---NGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGS 301 (357)
T ss_dssp GGGHHHH-SC-CEEEEEECSCCH-HHHHHHHHHEEE---EEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHh-CC-CCCEEEECCCCh-HHHHHHHHHHhc---CCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEe
Confidence 3333 34 689999887643 234566666653 22344455544 34566666540 01245556543
No 306
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=71.70 E-value=3.2 Score=38.53 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=24.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|..+|..+.. .| .+++++|++
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~-----~g-------~~v~~~~~~ 35 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQ-----TP-------HELIISGSS 35 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-----SS-------CEEEEECSS
T ss_pred cEEEEECCCHHHHHHHHHHHh-----CC-------CeEEEECCC
Confidence 489999999999999988753 24 367888763
No 307
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=71.54 E-value=4 Score=32.37 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=51.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch---hhcc-ccCCCCCHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK---PWAH-EHEPVNNLLDA 406 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~---~~a~-~~~~~~~L~ea 406 (477)
..+|+|+|+|..|..+++.+.. .|. .+++++|++. .+ +...+. .+.. +.....++.++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~-----~g~------~~v~~~~r~~----~~---~~~~~~~~~~~~~~d~~~~~~~~~~ 66 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKT-----SSN------YSVTVADHDL----AA---LAVLNRMGVATKQVDAKDEAGLAKA 66 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH-----CSS------EEEEEEESCH----HH---HHHHHTTTCEEEECCTTCHHHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHh-----CCC------ceEEEEeCCH----HH---HHHHHhCCCcEEEecCCCHHHHHHH
Confidence 4689999999999999998865 241 3688888741 11 111110 1111 11112356677
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcC
Q 011816 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASF 436 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~Ft~evv~~Ma~~ 436 (477)
++. +|++|=+.+ ..++..+++.+.+.
T Consensus 67 ~~~--~d~vi~~~~--~~~~~~~~~~~~~~ 92 (118)
T 3ic5_A 67 LGG--FDAVISAAP--FFLTPIIAKAAKAA 92 (118)
T ss_dssp TTT--CSEEEECSC--GGGHHHHHHHHHHT
T ss_pred HcC--CCEEEECCC--chhhHHHHHHHHHh
Confidence 764 999996663 35678888877653
No 308
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=71.46 E-value=19 Score=36.56 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=79.8
Q ss_pred HhcCCCeeeeeecCCcccHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHH
Q 011816 271 QNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAE 348 (477)
Q Consensus 271 ~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ 348 (477)
.+| .++++ +--++ +.+.+.+.+|- ++||.| || +-=-.=+||=++.-.+..| +|+..||+++|-|. -+|+
T Consensus 123 s~y-~D~Iv-iR~~~-~~~~~~lA~~~-~vPVINag~~-~~HPtQaLaDl~TI~E~~G-~l~glkva~vGD~~---nva~ 193 (340)
T 4ep1_A 123 SHY-IDGIM-IRTFS-HADVEELAKES-SIPVINGLTD-DHHPCQALADLMTIYEETN-TFKGIKLAYVGDGN---NVCH 193 (340)
T ss_dssp HHH-CSEEE-EECSC-HHHHHHHHHHC-SSCEEEEECS-SCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCC---HHHH
T ss_pred HHh-CCEEE-EecCC-hhHHHHHHHhC-CCCEEeCCCC-CCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCc---hhHH
Confidence 345 44433 55443 34555666664 689998 44 2233456677666666655 59999999999982 3778
Q ss_pred HHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEeccC
Q 011816 349 LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSG 420 (477)
Q Consensus 349 ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvLIG~S~ 420 (477)
-++.++.+ .|+ +|.++-.+|+.-.. + +-..-+.+|+.. ....++.|||++ +||+.-..=
T Consensus 194 Sl~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~a~~~G~~v~~~~d~~eav~~--aDVvyt~~w 256 (340)
T 4ep1_A 194 SLLLASAK-VGM-------HMTVATPVGYRPNE--E-IVKKALAIAKETGAEIEILHNPELAVNE--ADFIYTDVW 256 (340)
T ss_dssp HHHHHHHH-HTC-------EEEEECCTTCCCCH--H-HHHHHHHHHHHHCCCEEEESCHHHHHTT--CSEEEECCC
T ss_pred HHHHHHHH-cCC-------EEEEECCcccCCCH--H-HHHHHHHHHHHcCCeEEEECCHHHHhCC--CCEEEecCc
Confidence 77777766 475 68888888774321 1 111122333321 113689999998 999987653
No 309
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=71.37 E-value=3.4 Score=38.52 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|+|+|||.||+..|..+.+ .|. .++.++|+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~-----~g~------~~v~lie~~ 34 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATR-----GGV------KNAVLFEKG 34 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHH-----TTC------SSEEEECSS
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC------CcEEEEcCC
Confidence 479999999999999998865 253 278899985
No 310
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=71.36 E-value=2.7 Score=42.09 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=28.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhc-CeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR-KKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~-~~i~lvD~~G 376 (477)
...|||+|||.||+..|..|.+. |. +.. -++.++|+..
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~-----g~---~~~~~~v~liE~~~ 68 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQER-----AQ---AQGALEVLFLDKQG 68 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHH-----HH---HHCCCCEEEEESCS
T ss_pred cCCEEEECCCHHHHHHHHHHHhc-----cc---ccCcccEEEEecCC
Confidence 34799999999999999998764 20 000 3788998875
No 311
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=71.30 E-value=3.6 Score=37.73 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+|+|+|||.||+..|..+.+ .|+ ++.++++.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~-----~g~-------~v~lie~~ 35 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQ-----KGV-------RVGLLTQS 35 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESC
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEecC
Confidence 4679999999999999988865 253 68888875
No 312
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=71.08 E-value=3.9 Score=43.09 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+.+|||+|||.||++.|..|.+ .|+ ++.++|+..
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~-----~g~-------~v~iiE~~~ 42 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQ-----AGM-------KVLGIEAGE 42 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHh-----CCC-------CEEEEeCCC
Confidence 45789999999999999999865 354 589999874
No 313
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=71.05 E-value=3.1 Score=42.26 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=26.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
||||+|||.||+..|..+.+. |. .-+|.++|+..
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~-----g~-----~~~V~lie~~~ 35 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKDR 35 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHH-----CS-----SSCEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-----CCcEEEEeCCC
Confidence 799999999999999888653 42 23688898754
No 314
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=71.00 E-value=12 Score=34.97 Aligned_cols=94 Identities=13% Similarity=0.214 Sum_probs=54.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhccc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~v 410 (477)
+|+|.|| |-.|..+++.|++ .| .++.+++.. ..+...+.. ...+.. +..+ .++.++++.
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~-----~g--------~~v~~~~~~---~~~~~~~~~-~~~~~~~Dl~~-~~~~~~~~~- 63 (313)
T 3ehe_A 3 LIVVTGGAGFIGSHVVDKLSE-----SN--------EIVVIDNLS---SGNEEFVNE-AARLVKADLAA-DDIKDYLKG- 63 (313)
T ss_dssp CEEEETTTSHHHHHHHHHHTT-----TS--------CEEEECCCS---SCCGGGSCT-TEEEECCCTTT-SCCHHHHTT-
T ss_pred EEEEECCCchHHHHHHHHHHh-----CC--------CEEEEEcCC---CCChhhcCC-CcEEEECcCCh-HHHHHHhcC-
Confidence 7899997 7788888887753 23 344444321 111111111 111111 2233 678888884
Q ss_pred CCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 411 KPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 411 kptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+|++|-+.+.... -|..++++|.+..-+.|||.=|
T Consensus 64 -~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 64 -AEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp -CSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred -CCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 9999988875421 1234777887766678998655
No 315
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=70.96 E-value=3.4 Score=42.20 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.+++|+|||.||+..|..+.+ .|. ++.++|++.
T Consensus 25 ~~dVvVIGgG~aGl~aA~~la~-----~G~-------~V~liEk~~ 58 (491)
T 3urh_A 25 AYDLIVIGSGPGGYVCAIKAAQ-----LGM-------KVAVVEKRS 58 (491)
T ss_dssp -CCEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 4689999999999999998865 253 689999754
No 316
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=70.94 E-value=5.1 Score=39.46 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=25.0
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 011816 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
...++..|||++||..+.. .+ .....|+....|+|.=-+|
T Consensus 85 ~~~l~~~~PDvVi~~g~~~-s~---p~~laA~~~~iP~vihe~n 124 (365)
T 3s2u_A 85 LRVIRQLRPVCVLGLGGYV-TG---PGGLAARLNGVPLVIHEQN 124 (365)
T ss_dssp HHHHHHHCCSEEEECSSST-HH---HHHHHHHHTTCCEEEEECS
T ss_pred HHHHHhcCCCEEEEcCCcc-hH---HHHHHHHHcCCCEEEEecc
Confidence 4567888999999987643 12 1222244457888865444
No 317
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=70.88 E-value=5.8 Score=39.21 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=27.0
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
|+..||.|+|+|..|.++|..+... |. +++++|+.
T Consensus 14 l~~~~I~IIG~G~mG~alA~~L~~~-----G~-------~V~~~~~~ 48 (338)
T 1np3_A 14 IQGKKVAIIGYGSQGHAHACNLKDS-----GV-------DVTVGLRS 48 (338)
T ss_dssp HHTSCEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECCT
T ss_pred hcCCEEEEECchHHHHHHHHHHHHC-----cC-------EEEEEECC
Confidence 3456899999999999999988653 53 57777764
No 318
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=70.83 E-value=4 Score=41.18 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+|||+|||.||+..|..+.+. |. ++.++|+.
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~-----g~-------~V~liE~~ 38 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQL-----GF-------KTTCIEKR 38 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHH-----TC-------CEEEEECS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 45799999999999999888653 53 78999987
No 319
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=70.52 E-value=5.7 Score=36.85 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=58.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhccc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~v 410 (477)
||+|.|| |-.|..+++.|.+. .| .+++.++++. ++...+......+.. +..+..+|.+++++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~----~g-------~~V~~~~R~~----~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~- 65 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIAN----HI-------DHFHIGVRNV----EKVPDDWRGKVSVRQLDYFNQESMVEAFKG- 65 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHT----TC-------TTEEEEESSG----GGSCGGGBTTBEEEECCTTCHHHHHHHTTT-
T ss_pred EEEEEcCCchHHHHHHHHHhhC----CC-------CcEEEEECCH----HHHHHhhhCCCEEEEcCCCCHHHHHHHHhC-
Confidence 6899996 88999998886531 13 3677776642 111111111112211 11222468888886
Q ss_pred CCcEEEeccCCCCC------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 411 KPTILIGSSGVGRT------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 411 kptvLIG~S~~~g~------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.|++|=+++.... .++.++++|.+..-+.|||.=|
T Consensus 66 -~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 66 -MDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp -CSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred -CCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 8999988765421 2467888888766677888533
No 320
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=70.47 E-value=7.1 Score=36.61 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=55.0
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcc
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 409 (477)
..||+|.|| |-.|..+++.|++ .|. +++++++. ...| +. +..++.++++.
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~-----~g~-------~v~~~~r~-----~~~D-~~-----------d~~~~~~~~~~ 53 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQ-----RGD-------VELVLRTR-----DELN-LL-----------DSRAVHDFFAS 53 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTT-----CTT-------EEEECCCT-----TTCC-TT-----------CHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHh-----CCC-------eEEEEecC-----ccCC-cc-----------CHHHHHHHHHh
Confidence 468999996 8888888887754 242 46666543 1111 21 11357777876
Q ss_pred cCCcEEEeccCCCCC-----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 410 IKPTILIGSSGVGRT-----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 410 vkptvLIG~S~~~g~-----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++|++|=+.+..+. -|..+++++.+..-+.+||.=|
T Consensus 54 ~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 107 (321)
T 1e6u_A 54 ERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107 (321)
T ss_dssp HCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 679999988876531 2345677776655567888544
No 321
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=70.41 E-value=3.6 Score=38.71 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
--|||+|||+||+..|..+.+ .|. ++.++|+.
T Consensus 7 yDvvIIG~GpAGl~aA~~l~~-----~g~-------~V~liE~~ 38 (312)
T 4gcm_A 7 FDIAIIGAGPAGMTAAVYASR-----ANL-------KTVMIERG 38 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecC
Confidence 357999999999999977754 353 68888864
No 322
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=70.20 E-value=3.3 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=28.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++.++||+|||.||+..|..+.+ .| .++.++|+.-
T Consensus 5 ~~~dvvIIG~G~aG~~aA~~l~~-----~g-------~~V~lie~~~ 39 (464)
T 2eq6_A 5 KTYDLIVIGTGPGGYHAAIRAAQ-----LG-------LKVLAVEAGE 39 (464)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH-----TT-------CCEEEEESSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeCCC
Confidence 35789999999999999998865 25 3799999863
No 323
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=70.13 E-value=5.4 Score=39.81 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=30.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCccc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~ 379 (477)
..+|||+|||.||+..|..+.+. |. ..+|.++|+..-+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~-----g~-----~~~V~lie~~~~~~ 45 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQA-----GY-----QGLITVVGDEAERP 45 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHH-----TC-----CSCEEEEESSCSCC
T ss_pred CCcEEEECChHHHHHHHHHHHcc-----CC-----CCeEEEEECCCCCc
Confidence 46899999999999999998764 53 13699999876543
No 324
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=70.12 E-value=3.7 Score=41.81 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=27.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+|+|+|||.||+..|..+.+ .| .++.++|+.
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~-----~g-------~~V~liE~~ 36 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAA-----FG-------KRVALIESK 36 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH-----TT-------CCEEEEESS
T ss_pred cCcEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEcCC
Confidence 4689999999999999998865 25 379999986
No 325
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=69.98 E-value=3.7 Score=41.33 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=29.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
...+|+|+|||.||+..|..|.+ .|.. .++.++|+..
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~-----~G~~-----~~V~v~E~~~ 41 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLA-----EKAF-----DQVTLFERRG 41 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT-----TTCC-----SEEEEECSSS
T ss_pred CCCEEEEECccHHHHHHHHHHHh-----cCCC-----CCeEEEecCC
Confidence 35689999999999999998865 3541 3789999863
No 326
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=69.91 E-value=3.5 Score=38.45 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|+|+|||.||+..|..+.+ .|. ++.+++++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~li~~~ 33 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSAR-----KGI-------RTGLMGER 33 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHT-----TTC-------CEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 479999999999999988764 253 56677653
No 327
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=69.87 E-value=3.5 Score=41.97 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+.+|+|+|||.||+..|..+.+ .|. ++.++|+..-
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~-----~G~-------~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGK-----RGR-------RVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEeCCCC
Confidence 4689999999999999988765 353 6889998654
No 328
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=69.82 E-value=4.5 Score=39.66 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+|+|+|||.+|+.+|-.|.+. | .++.++++..
T Consensus 2 dVvVIGaGiaGLsaA~~La~~-----G-------~~V~vlE~~~ 33 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKA-----G-------HEVEVFERLP 33 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHT-----T-------CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CceEEEeCCC
Confidence 699999999999999988763 5 3688888763
No 329
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=69.41 E-value=3.4 Score=39.41 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=27.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
...+|+|+|||.||+..|..+.+. |+ ++.++|+.
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~~-----g~-------~v~lie~~ 46 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAARA-----QL-------APLVFEGT 46 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHT-----TC-------CCEEECCS
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 456899999999999999988652 54 57788854
No 330
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=69.36 E-value=3.7 Score=41.58 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+|||+|||.||+..|..+.+ .|. ++.++|+.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~-----~G~-------~V~liE~~ 35 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQ-----LGL-------STAIVEPK 35 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEeCC
Confidence 4579999999999999988765 253 68999986
No 331
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=69.33 E-value=3.8 Score=43.27 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=28.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+.+|||+|||.||+..|..|.+ .|+ ++.++|+..
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~-----~G~-------~v~iiE~~~ 54 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRS-----QGL-------TVRAFEAAS 54 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSS
T ss_pred CCCCEEEECchHHHHHHHHHHHh-----CCC-------CEEEEeCCC
Confidence 35789999999999999999865 353 789999864
No 332
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=69.26 E-value=3.7 Score=41.98 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=28.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+.+|||+|||.||+..|..+.+ .| .++.++|+.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~-----~g-------~~V~liE~~ 43 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAAS-----YG-------AKTLLVEAK 43 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH-----TS-------CCEEEEESS
T ss_pred ccCCEEEEcCCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 35789999999999999998865 25 379999986
No 333
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=69.23 E-value=4.1 Score=40.38 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=29.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
+..|||+|||.||+.+|-.|.+. |. +++.++|+....
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~-----G~------~~V~vlE~~~~~ 42 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARR-----GY------TNVTVLDPYPVP 42 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-----TC------CCEEEEESSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-----CC------CcEEEEeCCCCC
Confidence 45799999999999999888653 64 279999987654
No 334
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=69.17 E-value=4.1 Score=41.30 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.+|||+|||.||+..|..+.+ .|. ++.++|+..
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~-----~g~-------~V~lie~~~ 35 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQ-----LGM-------KTACVEKRG 35 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCCC
Confidence 3579999999999999988765 253 789999873
No 335
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=69.09 E-value=4.2 Score=40.68 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|||+|||.||+..|..|.+. . .| -++.++|+.-
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~--~-~g-------~~Vtlie~~~ 37 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNL--M-PD-------LKITLISDRP 37 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH--C-TT-------CEEEEECSSS
T ss_pred CCEEEECccHHHHHHHHHHHcC--C-CC-------CeEEEECCCC
Confidence 5899999999999999998762 0 12 3788898864
No 336
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=68.93 E-value=4.8 Score=39.75 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=26.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+|+|+|||.+|+.+|-.|.+. | .++.++++..
T Consensus 2 dVvVIGaGiaGLsaA~~La~~-----G-------~~V~vlE~~~ 33 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARN-----G-------HEIIVLEKSA 33 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHT-----T-------CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 799999999999999988753 5 3688888753
No 337
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=68.72 E-value=10 Score=35.71 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=57.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~ 409 (477)
.+|+|.|| |-.|..+++.|++ .| -+++.+|+.- ....+.+.. ...+.. +..+..++.++++.
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~---~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 65 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVD-----EG-------LSVVVVDNLQ---TGHEDAITE-GAKFYNGDLRDKAFLRDVFTQ 65 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEEECCS---SCCGGGSCT-TSEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHh-----CC-------CEEEEEeCCC---cCchhhcCC-CcEEEECCCCCHHHHHHHHhh
Confidence 37899986 8888888888765 25 3678777631 110011211 111111 11122357777775
Q ss_pred cCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 410 IKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 410 vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
.++|++|=+.+.... -+..+++++.+..-+.+||.=|
T Consensus 66 ~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 118 (330)
T 2c20_A 66 ENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118 (330)
T ss_dssp SCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 569999988775421 1345677776655567888544
No 338
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=68.66 E-value=8.4 Score=37.55 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=58.7
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCc-hhchhhcc-ccCCCCCHH
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-HFKKPWAH-EHEPVNNLL 404 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~-~~k~~~a~-~~~~~~~L~ 404 (477)
+++..+|+|.|| |-.|..+++.|++ .| ..+++.+|+.. ......+. ..+..+.. +..+..++.
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~-----~g------~~~V~~~~r~~---~~~~~~l~~~~~v~~~~~Dl~d~~~l~ 94 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLE-----LG------VNQVHVVDNLL---SAEKINVPDHPAVRFSETSITDDALLA 94 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHH-----TT------CSEEEEECCCT---TCCGGGSCCCTTEEEECSCTTCHHHHH
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHH-----cC------CceEEEEECCC---CCchhhccCCCceEEEECCCCCHHHHH
Confidence 466679999997 8888888888765 24 13688887642 11001111 01111111 111123466
Q ss_pred HHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcC-CCCcEEEEcC
Q 011816 405 DAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASF-NEKPLILALS 446 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~-~erPIIFaLS 446 (477)
++++ ++|++|=+++.... -+..+++++.+. .-+.+||.=|
T Consensus 95 ~~~~--~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS 151 (377)
T 2q1s_A 95 SLQD--EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA 151 (377)
T ss_dssp HCCS--CCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred HHhh--CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 6666 59999988875421 144567777655 4467887544
No 339
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=68.55 E-value=2.4 Score=45.22 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=33.5
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++|++.||+++|+|..|.-||+.|+.+ |+ ++|.++|.+=
T Consensus 28 ~~L~~~~VlvvG~GGlGseiak~La~a-----GV------g~itlvD~D~ 66 (531)
T 1tt5_A 28 EALESAHVCLINATATGTEILKNLVLP-----GI------GSFTIIDGNQ 66 (531)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHTT-----TC------SEEEEECCCB
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCE
Confidence 357789999999999999999999864 75 7999999763
No 340
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=68.30 E-value=21 Score=34.61 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=52.2
Q ss_pred HHHHHhCCCCccceEEEe-CcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc--
Q 011816 320 AALKLIGGTLAEHRFLFL-GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-- 396 (477)
Q Consensus 320 ~Alr~~g~~l~d~riv~~-GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-- 396 (477)
++++..+ ...++++||. |+|..|..++.++... |. +++.+|+. ..| ++..++.=|..
T Consensus 155 ~~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~-----Ga-------~Vi~~~~~----~~~---~~~~~~~Ga~~~~ 214 (349)
T 3pi7_A 155 AMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEE-----GF-------RPIVTVRR----DEQ---IALLKDIGAAHVL 214 (349)
T ss_dssp HHHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHH-----TC-------EEEEEESC----GGG---HHHHHHHTCSEEE
T ss_pred HHHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHC-----CC-------EEEEEeCC----HHH---HHHHHHcCCCEEE
Confidence 5666655 4445777776 8888888887766542 52 68887752 111 21111111110
Q ss_pred cCCCCCHHHHhcc----cCCcEEEeccCCCCCCCHHHHHHHH
Q 011816 397 HEPVNNLLDAVKV----IKPTILIGSSGVGRTFTKEVIEAMA 434 (477)
Q Consensus 397 ~~~~~~L~eav~~----vkptvLIG~S~~~g~Ft~evv~~Ma 434 (477)
.....++.+.++. -++|++|=+++.. ..++.++.|+
T Consensus 215 ~~~~~~~~~~v~~~~~~~g~D~vid~~g~~--~~~~~~~~l~ 254 (349)
T 3pi7_A 215 NEKAPDFEATLREVMKAEQPRIFLDAVTGP--LASAIFNAMP 254 (349)
T ss_dssp ETTSTTHHHHHHHHHHHHCCCEEEESSCHH--HHHHHHHHSC
T ss_pred ECCcHHHHHHHHHHhcCCCCcEEEECCCCh--hHHHHHhhhc
Confidence 1112356555543 3799999877743 2366777775
No 341
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=68.29 E-value=4.3 Score=42.37 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=29.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
..+|||+|||.||...|-.|.+... .| -+|.++|+.-.
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~--~G-------~~V~liE~~~~ 62 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQ--GT-------ADITLLQAPDI 62 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTT--TS-------SEEEEEECCCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcC--CC-------CcEEEEeCCCC
Confidence 4689999999999999999876420 24 37999998643
No 342
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=68.09 E-value=4.2 Score=40.96 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|+|+|||.||+..|-.|.+. |+ ++.++|+.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~-----G~-------~V~viE~~ 54 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQH-----DV-------DVTVYTDR 54 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHT-----TC-------EEEEEESC
T ss_pred CCEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 5799999999999999888763 64 67888865
No 343
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=68.08 E-value=3.5 Score=42.07 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
.+|||+|||.||...|-.|.+... .|+ ++.++|+.-.
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~--~G~-------~V~lvE~~~~ 39 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFD--DRI-------DVTLVESGNV 39 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHG--GGS-------EEEEEEC---
T ss_pred ceEEEECCCHHHHHHHHHHHhhcC--CCC-------EEEEEecCCC
Confidence 479999999999999999876431 143 6889988643
No 344
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=68.04 E-value=4.3 Score=40.95 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.++||+|||.||+..|..+.+. |. ++.++|+..
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~-----g~-------~V~lie~~~ 34 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQL-----GM-------KVGVVEKEK 34 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEESSS
T ss_pred CCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEeCCC
Confidence 4799999999999999887652 53 789999873
No 345
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=68.01 E-value=4.2 Score=40.84 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=28.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|||+|||.||+..|..|.+.+.. | -+|.++|+.-
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~--g-------~~Vtlie~~~ 40 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGS--G-------HEVTLISAND 40 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGG--G-------SEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHHhccCCC--c-------CEEEEEeCCC
Confidence 5899999999999999998764311 2 3788888764
No 346
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=67.98 E-value=4.3 Score=42.06 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=27.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~-----~G~-------~v~vlE~~ 44 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRL-----GGV-------DVMVLEQL 44 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEECC
Confidence 56789999999999999998875 365 46677764
No 347
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=67.90 E-value=3 Score=40.00 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|+|+|||.+|+.+|..|.+.. ..| -++.++|+.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~--~~G-------~~V~v~Ek~ 36 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQT--SGP-------LYLAVWDKA 36 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC---CC-------EEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhc--cCC-------ceEEEEECC
Confidence 37999999999999999886410 024 268888876
No 348
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=67.77 E-value=4.8 Score=41.92 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=28.9
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
-.+.+|||+|||.||+..|..|.+. |+ ++.++|+..
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~~-----G~-------~v~iiE~~~ 49 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLREL-----GR-------SVHVIETAG 49 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSS
T ss_pred CCCCCEEEECccHHHHHHHHHHHhC-----CC-------CEEEEeCCC
Confidence 3456899999999999999998753 64 688898764
No 349
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=67.76 E-value=3.7 Score=38.25 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=24.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.|||+|||+||+..|..+.+ .|+ ++.++|+.
T Consensus 6 DvvIIG~GpAGl~AA~~la~-----~g~-------~v~liE~~ 36 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGR-----SSL-------KPVMYEGF 36 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTC-------CCEEECCS
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecC
Confidence 68999999999999977654 354 57788864
No 350
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=67.69 E-value=4.4 Score=41.97 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=28.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|||+|||.||+..|-.|.+... .|+ ++.++|+.-
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~--~G~-------~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQ--QQA-------NITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCC--SSC-------EEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcC--CCC-------EEEEECCCC
Confidence 4689999999999999998876310 243 789999854
No 351
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=67.64 E-value=4.4 Score=42.00 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|..+|..+.+. | -+++++|.+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~-----G-------~~V~~~D~~ 34 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL-----G-------ANVRCIDTD 34 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhc-----C-------CEEEEEECC
Confidence 5899999999999999998763 5 368888874
No 352
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=67.58 E-value=4.2 Score=42.17 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=28.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+.+|||+|||.||+..|..+.+. | .++.++|+..
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~-----G-------~~V~liE~~~ 76 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAM-----G-------GRQLIVDRWP 76 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHT-----T-------CCEEEEESSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEeCCC
Confidence 356899999999999999988653 5 3689999865
No 353
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*
Probab=67.49 E-value=3.9 Score=41.95 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=67.7
Q ss_pred cceEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEc--cCCc---ccCCCCCCCchhchhhccccCCCCCHH
Q 011816 331 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVD--SKGL---IVSSRKDSLQHFKKPWAHEHEPVNNLL 404 (477)
Q Consensus 331 d~riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD--~~GL---i~~~r~~~l~~~k~~~a~~~~~~~~L~ 404 (477)
..||.|+| ||..|..+|-.|+.. ++- .| ...+.|+| .... +.-...| |.+...+|.+...-..+..
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~-----~l~-~e-~~~l~L~d~d~~~~~~~~~G~amD-L~h~~~p~~~~v~i~~~~y 103 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASG-----EVF-GQ-DQPIALKLLGSERSFQALEGVAME-LEDSLYPLLREVSIGIDPY 103 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT-----TTT-CT-TCCEEEEEECCGGGHHHHHHHHHH-HHTTTCTTEEEEEEESCHH
T ss_pred CCEEEEECCCChHHHHHHHHHHcC-----CcC-CC-CceeEEEecCccchhhhhHHHHHh-HHhhhhhhcCCcEEecCCH
Confidence 36999999 799999998887652 441 01 11255544 3210 0000011 3333223433211124578
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhccc
Q 011816 405 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWS 463 (477)
Q Consensus 405 eav~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~-~erPIIFaLSNPt~~~E~tpe~A~~~t 463 (477)
+++++ +|++|=+.+.+ |- +=+++++.++++ +...||+-.|||. .+..--|++.+
T Consensus 104 ~~~~d--aDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPv---D~~t~ia~k~s 172 (375)
T 7mdh_A 104 EVFED--VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPC---NTNALICLKNA 172 (375)
T ss_dssp HHTTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH---HHHHHHHHHTC
T ss_pred HHhCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch---hHHHHHHHHHc
Confidence 88887 99887555433 31 123555667776 7899999999997 44555555543
No 354
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=67.42 E-value=20 Score=34.91 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=57.5
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhc
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVK 408 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~ 408 (477)
..+|+|.|| |-.|..+++.|++ .| -+++.+|++- .....+......+.. +..+..++.++++
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~----~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 92 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKH-----EG-------HYVIASDWKK----NEHMTEDMFCDEFHLVDLRVMENCLKVTE 92 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEEESSC----CSSSCGGGTCSEEEECCTTSHHHHHHHHT
T ss_pred CCeEEEECCccHHHHHHHHHHHH-----CC-------CeEEEEECCC----ccchhhccCCceEEECCCCCHHHHHHHhC
Confidence 468999998 8888888888765 24 3688888742 111111111111211 1122235777787
Q ss_pred ccCCcEEEeccCCCCC--C---------------CHHHHHHHHcCCCCcEEEEcC
Q 011816 409 VIKPTILIGSSGVGRT--F---------------TKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~--F---------------t~evv~~Ma~~~erPIIFaLS 446 (477)
+ +|++|=+.+.... + +..+++++.+..-+.|||.=|
T Consensus 93 ~--~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS 145 (379)
T 2c5a_A 93 G--VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 145 (379)
T ss_dssp T--CSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred C--CCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 4 9999988775431 1 235667776655567888543
No 355
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=67.41 E-value=16 Score=31.91 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=54.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh--chhhcc-ccCCCCCHHHHhc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLDAVK 408 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~--k~~~a~-~~~~~~~L~eav~ 408 (477)
||+|.|| |-.|..+++.|++. | -+++.++++. +.+... ...+.. +..+..+ ++++
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~-----g-------~~V~~~~R~~-------~~~~~~~~~~~~~~~D~~d~~~--~~~~ 60 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNR-----G-------HEVTAIVRNA-------GKITQTHKDINILQKDIFDLTL--SDLS 60 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-----T-------CEEEEEESCS-------HHHHHHCSSSEEEECCGGGCCH--HHHT
T ss_pred eEEEEcCCchhHHHHHHHHHhC-----C-------CEEEEEEcCc-------hhhhhccCCCeEEeccccChhh--hhhc
Confidence 7999996 88898898888652 5 3688887741 111111 111111 1111111 6776
Q ss_pred ccCCcEEEeccCCCCC-------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 409 VIKPTILIGSSGVGRT-------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 409 ~vkptvLIG~S~~~g~-------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+ +|++|=+.+.... .+..++++|.+...+.+||.-|
T Consensus 61 ~--~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 61 D--QNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp T--CSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred C--CCEEEECCcCCccccchHHHHHHHHHHHHHhcCCceEEEEec
Confidence 5 8999988776421 2367888888765567777544
No 356
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=67.33 E-value=5.5 Score=41.65 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=30.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
...+|||+|||.||+..|..|.+. ..| -+|.++|+..-+
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~---~~g-------~~V~vie~~~~~ 73 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRL---SEE-------DEIIMVERGEYI 73 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH---CSS-------SEEEEECSSSCS
T ss_pred cCCCEEEECCcHHHHHHHHHHHhh---CcC-------CCEEEEECCCCc
Confidence 457999999999999999988764 012 478999987653
No 357
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=67.33 E-value=5 Score=38.49 Aligned_cols=37 Identities=30% Similarity=0.593 Sum_probs=28.6
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+.-|+|+|||+||+..|..|.+. +.|+ ++.++|+.
T Consensus 63 ~~~~DV~IIGaGPAGlsAA~~la~~---r~G~-------~V~viEk~ 99 (326)
T 3fpz_A 63 FAVSDVIIVGAGSSGLSAAYVIAKN---RPDL-------KVCIIESS 99 (326)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHH---CTTS-------CEEEECSS
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHh---CCCC-------eEEEEECC
Confidence 3466799999999999999988653 1353 68888875
No 358
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=67.19 E-value=2.4 Score=39.79 Aligned_cols=99 Identities=10% Similarity=0.065 Sum_probs=58.3
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCC--CCchhchhhcc-ccCCCCCHHHH
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHFKKPWAH-EHEPVNNLLDA 406 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~--~l~~~k~~~a~-~~~~~~~L~ea 406 (477)
..+|+|.|| |-.|..+++.|++. | ..+++.++++. .+.. .+......+.+ +..+..+|.++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~-----g------~~~V~~~~R~~----~~~~~~~l~~~~~~~~~~D~~d~~~l~~~ 69 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLED-----G------TFKVRVVTRNP----RKKAAKELRLQGAEVVQGDQDDQVIMELA 69 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH-----C------SSEEEEEESCT----TSHHHHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhc-----C------CceEEEEEcCC----CCHHHHHHHHCCCEEEEecCCCHHHHHHH
Confidence 468999998 88999999888753 3 13677777641 1100 01010111111 11222467888
Q ss_pred hcccCCcEEEeccCCCCC--------CCHHHHHHHHcCCCCcEEEEcCC
Q 011816 407 VKVIKPTILIGSSGVGRT--------FTKEVIEAMASFNEKPLILALSN 447 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~--------Ft~evv~~Ma~~~erPIIFaLSN 447 (477)
+++ +|++|-+++.... .+..++++|.+..-+-||| .|-
T Consensus 70 ~~~--~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~-~S~ 115 (299)
T 2wm3_A 70 LNG--AYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVY-SGL 115 (299)
T ss_dssp HTT--CSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEE-CCC
T ss_pred Hhc--CCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEE-EcC
Confidence 886 8999987653211 3456778887655567888 664
No 359
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=67.17 E-value=5.6 Score=42.90 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=28.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|||+|||.||+..|..+.+. |. ++.++|+..
T Consensus 391 ~~~VvIIGgG~AGl~aA~~La~~-----G~-------~V~liE~~~ 424 (690)
T 3k30_A 391 DARVLVVGAGPSGLEAARALGVR-----GY-------DVVLAEAGR 424 (690)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSSS
T ss_pred cceEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 46899999999999999998763 53 699999863
No 360
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=67.10 E-value=5.2 Score=40.87 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=28.8
Q ss_pred ccCCCchHHHHHHHHHHHHHH---hCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 304 NDDIQGTASVVLAGVVAALKL---IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 304 nDDiQGTaaV~LAgll~Alr~---~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
|...||-|+++.---+.--.. ...+....+|||+|||.||+..|..+.+.. .| .++.++|+....
T Consensus 6 ~~~~~~~~~~~~np~~g~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~~---~g-------~~V~lie~~~~~ 73 (480)
T 3cgb_A 6 HHHHHGMASMTGGQQMGRTLYDDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRND---EN-------ANVVTLEKGEIY 73 (480)
T ss_dssp -------------------------------CEEEEECCSHHHHHHHHHHHHHC---TT-------CEEEEECSSSCC
T ss_pred cccccccccccchhhhcccccCCCCcCccccceEEEECCCHHHHHHHHHHHhhC---cC-------CcEEEEECCCCC
Confidence 344567777665444432211 111122358999999999999999986531 12 479999987543
No 361
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=67.09 E-value=13 Score=34.82 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=42.6
Q ss_pred CCCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHH
Q 011816 326 GGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 404 (477)
Q Consensus 326 g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~ 404 (477)
..+++++++||-||+. .|.++|+.+++ .|. +++++|++.- .+......+.-+..+..++.
T Consensus 9 ~~~~~~k~vlVTGas~GIG~aia~~l~~-----~G~-------~V~~~~r~~~-------~~~~~~~~~~~Dv~~~~~v~ 69 (269)
T 3vtz_A 9 MEEFTDKVAIVTGGSSGIGLAVVDALVR-----YGA-------KVVSVSLDEK-------SDVNVSDHFKIDVTNEEEVK 69 (269)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHH-----TTC-------EEEEEESCC---------CTTSSEEEECCTTCHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEEeCCch-------hccCceeEEEecCCCHHHHH
Confidence 4578899999999854 34445555543 363 6888876421 11111111111222223455
Q ss_pred HHhccc-----CCcEEEeccCCC
Q 011816 405 DAVKVI-----KPTILIGSSGVG 422 (477)
Q Consensus 405 eav~~v-----kptvLIG~S~~~ 422 (477)
++++.+ ++|+||=..+..
T Consensus 70 ~~~~~~~~~~g~iD~lv~nAg~~ 92 (269)
T 3vtz_A 70 EAVEKTTKKYGRIDILVNNAGIE 92 (269)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCcC
Confidence 555544 799999777653
No 362
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Probab=66.97 E-value=6.5 Score=41.31 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++++.+++|.|||.+|.++|..+.+. |. +++++++.
T Consensus 361 ~l~~k~vlV~GaGGig~aia~~L~~~-----G~-------~V~i~~R~ 396 (523)
T 2o7s_A 361 PLASKTVVVIGAGGAGKALAYGAKEK-----GA-------KVVIANRT 396 (523)
T ss_dssp -----CEEEECCSHHHHHHHHHHHHH-----CC--------CEEEESS
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 57788999999997777777776543 52 57888763
No 363
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=66.87 E-value=6.6 Score=39.51 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=28.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
..+|||+|||.||+..|..|.+. +- ..++.++|+..-
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~-----~~-----~~~V~vie~~~~ 39 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRL-----KP-----EWDVKVFEATEW 39 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CT-----TSEEEEECSSSC
T ss_pred cCcEEEECCcHHHHHHHHHHHHh-----Cc-----CCCEEEEECCCc
Confidence 46899999999999999988653 11 137888888753
No 364
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=66.85 E-value=4.6 Score=40.98 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=28.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.++||+|||.||+..|..+.+. |. ++.++|+..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~-----g~-------~V~liE~~~ 39 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQL-----GF-------KTVCIEKNE 39 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeCCC
Confidence 45799999999999999988652 53 799999874
No 365
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=66.81 E-value=11 Score=35.39 Aligned_cols=98 Identities=16% Similarity=0.294 Sum_probs=55.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhccc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~v 410 (477)
||+|.|| |-.|..+++.|++ .| -+++.+|+.- ......+.. ...+.. +..+..++.++++..
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~-----~G-------~~V~~~~r~~---~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~ 65 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLA-----RG-------LEVAVLDNLA---TGKRENVPK-GVPFFRVDLRDKEGVERAFREF 65 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHT-----TT-------CEEEEECCCS---SCCGGGSCT-TCCEECCCTTCHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHH-----CC-------CEEEEEECCC---cCchhhccc-CeEEEECCCCCHHHHHHHHHhc
Confidence 6899987 7788888887764 25 3677777621 111111110 111111 111223577778766
Q ss_pred CCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 411 KPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 411 kptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
++|++|=+.+..+. -+..+++++.+..-+.|||.=|
T Consensus 66 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 117 (311)
T 2p5y_A 66 RPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAST 117 (311)
T ss_dssp CCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 79999988775431 0235667776655567888544
No 366
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=66.81 E-value=4.9 Score=39.33 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|+|+|||.||+..|-.|.+. ..|+ ++.++|+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~---~~G~-------~V~v~E~~ 34 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQA---RPLW-------AIDIVEKN 34 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHH---CTTS-------EEEEECSS
T ss_pred eEEEECCCHHHHHHHHHHHhc---CCCC-------CEEEEECC
Confidence 699999999999999988653 0143 56777764
No 367
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=66.80 E-value=4.4 Score=41.99 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=27.3
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-++..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~-----~G~-------~v~vlE~~ 43 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRL-----AGV-------EVVVLERL 43 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESC
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEeCC
Confidence 456789999999999999998875 365 46667654
No 368
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=66.63 E-value=6.1 Score=40.75 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (477)
+.++||+|||.||+..|..+.+. .| .++.++|
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~----~G-------~~V~liE 38 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATL----YG-------KRVAVVD 38 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH----HC-------CCEEEEE
T ss_pred ccCEEEECCChhHHHHHHHHHHh----cC-------CeEEEEe
Confidence 46899999999999999998761 15 3789999
No 369
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=66.59 E-value=5.1 Score=41.50 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=28.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
...+|+|+|||.||+..|..+.. .|+ ++.++|+..-
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~-----~G~-------~V~liEk~~~ 126 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELAL-----LGA-------RVVLVEKRIK 126 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESCSS
T ss_pred CCCCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEEeccc
Confidence 35689999999999999988865 364 6888887643
No 370
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=66.57 E-value=4.9 Score=36.96 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.9
Q ss_pred CCCCccceEEEeCcc---hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 326 GGTLAEHRFLFLGAG---EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 326 g~~l~d~riv~~GAG---sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..++++.++||.||+ -.|.++|+.+++ .|. +++++|+.
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~-----~G~-------~V~~~~r~ 49 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKR-----EGA-------ELAFTYVG 49 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHH-----TTC-------EEEEEESS
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHH-----cCC-------CEEEEecc
Confidence 356889999999984 566667777765 353 68888875
No 371
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=66.57 E-value=13 Score=35.16 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=54.5
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~ 409 (477)
.||+|.|| |-.|..+++.|++ .| .+++.+|++. +..+.+...+..+.. +..+..++.+++++
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~----~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~ 77 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRA-----AG-------HDLVLIHRPS----SQIQRLAYLEPECRVAEMLDHAGLERALRG 77 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH-----TT-------CEEEEEECTT----SCGGGGGGGCCEEEECCTTCHHHHHHHTTT
T ss_pred CEEEEECCCcHHHHHHHHHHHH-----CC-------CEEEEEecCh----HhhhhhccCCeEEEEecCCCHHHHHHHHcC
Confidence 38999996 8889889888865 24 3688888742 111112111111211 11222357778875
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 410 vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+|++|=+.+..+. -+..+++++.+..-+.|||.=|
T Consensus 78 --~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 126 (342)
T 2x4g_A 78 --LDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGS 126 (342)
T ss_dssp --CSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred --CCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 9999988775431 1346777776655567888543
No 372
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=66.44 E-value=2.5 Score=44.08 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||||+|+|.||+..|+.|.. .+ -+|.|+|++
T Consensus 43 prVVIIGgG~AGl~~A~~L~~-----~~-------~~VtLId~~ 74 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDT-----KK-------YNVSIISPR 74 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCT-----TT-------CEEEEEESS
T ss_pred CCEEEECCcHHHHHHHHHhhh-----CC-------CcEEEECCC
Confidence 489999999999999877632 12 379999986
No 373
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=66.28 E-value=4.6 Score=38.46 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=57.7
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCC---CCCH-
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNL- 403 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~---~~~L- 403 (477)
+|++.++||+|+|..|...+++|+.+ | .++.+++.. ..+.-+.++....- ...+
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~-----G-------A~VtVvap~----------~~~~l~~l~~~~~i~~i~~~~~ 85 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQE-----G-------AAITVVAPT----------VSAEINEWEAKGQLRVKRKKVG 85 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGG-----C-------CCEEEECSS----------CCHHHHHHHHTTSCEEECSCCC
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEECCC----------CCHHHHHHHHcCCcEEEECCCC
Confidence 57889999999999999999988764 5 368888863 11111122211000 0011
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccCCcEEEE
Q 011816 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKVQTIIL 470 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe~A~~~t~G~aifA 470 (477)
.+-+++ +|.+|..++.+ ..++.+. ..|+ ...| |=...||. .|++-----..+|...+|
T Consensus 86 ~~dL~~--adLVIaAT~d~-~~N~~I~-~~ak-~gi~-VNvvD~p~---~~~f~~Paiv~rg~l~ia 143 (223)
T 3dfz_A 86 EEDLLN--VFFIVVATNDQ-AVNKFVK-QHIK-NDQL-VNMASSFS---DGNIQIPAQFSRGRLSLA 143 (223)
T ss_dssp GGGSSS--CSEEEECCCCT-HHHHHHH-HHSC-TTCE-EEC--------CCSEECCEEEEETTEEEE
T ss_pred HhHhCC--CCEEEECCCCH-HHHHHHH-HHHh-CCCE-EEEeCCcc---cCeEEEeeEEEeCCEEEE
Confidence 111333 88898766654 4444443 3455 3344 33355555 555432222345666555
No 374
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=66.28 E-value=7.5 Score=36.06 Aligned_cols=86 Identities=10% Similarity=0.231 Sum_probs=54.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
||+|.|| |-.|..+++.|+ . | -+++.+|+..-.. .-+..+..++.+++++.+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~-----g-------~~V~~~~r~~~~~--------------~~D~~d~~~~~~~~~~~~ 54 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-P-----V-------GNLIALDVHSKEF--------------CGDFSNPKGVAETVRKLR 54 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-T-----T-------SEEEEECTTCSSS--------------CCCTTCHHHHHHHHHHHC
T ss_pred eEEEECCCCHHHHHHHHHhh-c-----C-------CeEEEeccccccc--------------cccCCCHHHHHHHHHhcC
Confidence 7899998 888888888775 2 4 3688887753111 001111235777888778
Q ss_pred CcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 412 PTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 412 ptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+|++|=+.+.... -+..+++++.+..- .+||.=|
T Consensus 55 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS 104 (299)
T 1n2s_A 55 PDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYST 104 (299)
T ss_dssp CSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEE
T ss_pred CCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEec
Confidence 9999988875431 14566777765443 5888544
No 375
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=66.27 E-value=4.3 Score=40.95 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|||+|||.||+..|..+.+ .|. ++.++|+.
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~-----~g~-------~V~lie~~ 35 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQ-----LGQ-------KVTIVEKG 35 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEECC
Confidence 479999999999999988765 253 78999986
No 376
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=66.16 E-value=8.4 Score=34.62 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=40.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc-
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI- 410 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v- 410 (477)
+++|.|| |-.|..+++.|++ .| -+++++|++. . .+.. .+.-+.....++.++++.+
T Consensus 3 ~vlVtGasg~iG~~l~~~L~~-----~g-------~~V~~~~r~~----~---~~~~---~~~~D~~~~~~~~~~~~~~~ 60 (255)
T 2dkn_A 3 VIAITGSASGIGAALKELLAR-----AG-------HTVIGIDRGQ----A---DIEA---DLSTPGGRETAVAAVLDRCG 60 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEEESSS----S---SEEC---CTTSHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCcHHHHHHHHHHHh-----CC-------CEEEEEeCCh----h---Hccc---cccCCcccHHHHHHHHHHcC
Confidence 6889987 6677777777764 25 3688888741 1 1211 1111111113466666644
Q ss_pred -CCcEEEeccCCCC
Q 011816 411 -KPTILIGSSGVGR 423 (477)
Q Consensus 411 -kptvLIG~S~~~g 423 (477)
++|++|=+.+...
T Consensus 61 ~~~d~vi~~Ag~~~ 74 (255)
T 2dkn_A 61 GVLDGLVCCAGVGV 74 (255)
T ss_dssp TCCSEEEECCCCCT
T ss_pred CCccEEEECCCCCC
Confidence 7999998877543
No 377
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=66.09 E-value=5.5 Score=38.13 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|.+||..++.+ |. +++++|+.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT-----GH-------TVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5899999999999999998753 53 68888874
No 378
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=66.06 E-value=5 Score=41.33 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=27.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|||+|||.+|+++|-.+.+ .|+ ++.++|+..
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~-----~G~-------~V~llE~~~ 36 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAG-----RGL-------SVLMLEAQD 36 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHh-----CCC-------CEEEEECCC
Confidence 4579999999999999998875 364 688999864
No 379
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=65.94 E-value=18 Score=34.10 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=59.2
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchh----------hcc-ccC
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP----------WAH-EHE 398 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~----------~a~-~~~ 398 (477)
..+|+|.|| |-.|..+++.|++ .| -+++++|+.. .. .....+. +.. +..
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~-----~G-------~~V~~~~r~~----~~---~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLA-----HG-------YDVVIADNLV----NS---KREAIARIEKITGKTPAFHETDVS 65 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEECCCS----SS---CTHHHHHHHHHHSCCCEEECCCTT
T ss_pred CcEEEEecCCcHHHHHHHHHHHH-----CC-------CcEEEEecCC----cc---hHHHHHHHHhhcCCCceEEEeecC
Confidence 468999996 7788888887765 25 3688887641 11 1111111 111 111
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 399 PVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 399 ~~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+..++.++++..++|++|=+.+.... -+..+++.|.+..-+.|||.=|
T Consensus 66 d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 129 (341)
T 3enk_A 66 DERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129 (341)
T ss_dssp CHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 22357778876679999988775421 1346778888766678998544
No 380
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=65.77 E-value=11 Score=33.64 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=57.0
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCC-CCCHHHHhcc
Q 011816 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEP-VNNLLDAVKV 409 (477)
Q Consensus 333 riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~-~~~L~eav~~ 409 (477)
||+|.| +|-.|..+++.|++ .| -++++++++.- +...+ .+..+.. +..+ ..++.+++++
T Consensus 2 ~ilItGatG~iG~~l~~~L~~-----~g-------~~V~~~~R~~~----~~~~~--~~~~~~~~D~~d~~~~~~~~~~~ 63 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLST-----TD-------YQIYAGARKVE----QVPQY--NNVKAVHFDVDWTPEEMAKQLHG 63 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTT-----SS-------CEEEEEESSGG----GSCCC--TTEEEEECCTTSCHHHHHTTTTT
T ss_pred eEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEECCcc----chhhc--CCceEEEecccCCHHHHHHHHcC
Confidence 789999 57777777777653 25 37888887521 11111 1111211 2222 2356777775
Q ss_pred cCCcEEEeccCCCCC--------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 410 IKPTILIGSSGVGRT--------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 410 vkptvLIG~S~~~g~--------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+|++|=+.+.... -+..++++|.+..-+.|||.=|
T Consensus 64 --~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 64 --MDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp --CSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred --CCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 9999988775421 1567889988766677888554
No 381
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=65.77 E-value=6.4 Score=40.64 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=28.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
.+|||+|||.||+..|..|.+. |- .-+|.++|+..-+
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~-----~~-----~~~V~lie~~~~~ 38 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRL-----SE-----TAEIIMFERGEYV 38 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-----CS-----SSEEEEECSSSCS
T ss_pred CcEEEECCCHHHHHHHHHHHhh-----Cc-----CCCEEEEECCCCc
Confidence 4899999999999999988653 21 2478999987543
No 382
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=65.74 E-value=4.1 Score=41.24 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=27.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+|+|+|||+||+..|..+.+ .| .++.++|+.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~-----~g-------~~V~liE~~ 36 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAM-----YG-------QKCALIEAK 36 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT-----TT-------CCEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEcCC
Confidence 4689999999999999998864 25 379999986
No 383
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=65.73 E-value=4.7 Score=41.49 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|||+|||.||+..|..+.+. | .++.++|+.-
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~-----g-------~~V~liE~~~ 35 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARH-----N-------AKVALVEKSR 35 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-----T-------CCEEEEESSS
T ss_pred cCEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeCCC
Confidence 5799999999999999988652 5 3799999863
No 384
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=65.73 E-value=5.9 Score=39.99 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
.+|||+|||.||+..|..|.+.. .| .+|.++|+.--
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~---~g-------~~V~vie~~~~ 38 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKY---PQ-------AEISLIDKQAT 38 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC---SS-------SEEEEECSSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhhC---cC-------CcEEEEECCCC
Confidence 48999999999999999987631 12 47889988653
No 385
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=65.72 E-value=10 Score=37.94 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|..+|..|... | .+++++|++
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~-----G-------~~V~~~dr~ 40 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAA-----N-------HSVFGYNRS 40 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-----T-------CCEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 5899999999999999998753 5 368888864
No 386
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=65.55 E-value=5.5 Score=40.45 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=27.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..++|+|||.||+..|..+.+ .|. ++.++|++.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~-----~G~-------~V~liEk~~ 37 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAK-----AKY-------NVLMADPKG 37 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECTTS
T ss_pred cceEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEECCC
Confidence 3579999999999999988865 353 789999654
No 387
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=65.48 E-value=5 Score=40.76 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=27.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.++||+|||.||+..|..+.+. | .++.++|+.
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~-----g-------~~V~lie~~ 37 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQL-----G-------IPTVLVEGQ 37 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHH-----T-------CCEEEECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEccC
Confidence 45799999999999999887653 4 379999983
No 388
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=65.42 E-value=4.5 Score=41.68 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~-----~G~-------~v~viEr~~ 38 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLAR-----QGV-------RVLVVERRP 38 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT-----TTC-------CEEEECSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEeCCC
Confidence 5689999999999999988865 364 588888764
No 389
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=65.39 E-value=10 Score=36.84 Aligned_cols=97 Identities=24% Similarity=0.371 Sum_probs=54.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
+||-|+|-|..|.++|..|+++ |. +++.+|+. .++.+.+ .+.-+ ....++.|+++.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~-----G~-------~V~v~dr~----~~~~~~l---~~~G~---~~~~s~~e~~~~-- 61 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA-----GY-------ELVVWNRT----ASKAEPL---TKLGA---TVVENAIDAITP-- 61 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-----TC-------EEEEC-----------CTT---TTTTC---EECSSGGGGCCT--
T ss_pred CcEEEEecHHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHHHHHH---HHcCC---eEeCCHHHHHhc--
Confidence 5899999999999999999763 54 57777762 3322222 11111 123578888876
Q ss_pred CcEEEeccCCCC----CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHH
Q 011816 412 PTILIGSSGVGR----TFTKEVIEAMASFNEKPLILALSNPTSQSECTAE 457 (477)
Q Consensus 412 ptvLIG~S~~~g----~Ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpe 457 (477)
.|++|=+-..+. ++..+++..+. +.-||.=+|+=. |+.+-+
T Consensus 62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~---~~~iiid~sT~~--p~~~~~ 106 (297)
T 4gbj_A 62 GGIVFSVLADDAAVEELFSMELVEKLG---KDGVHVSMSTIS--PETSRQ 106 (297)
T ss_dssp TCEEEECCSSHHHHHHHSCHHHHHHHC---TTCEEEECSCCC--HHHHHH
T ss_pred CCceeeeccchhhHHHHHHHHHHhhcC---CCeEEEECCCCC--hHHHHH
Confidence 777774322211 23334444443 455777777533 554443
No 390
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=65.29 E-value=5.3 Score=40.98 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.4
Q ss_pred CccceEEEeCcchHHHHHHHHHHHH
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
....+|+|+|||.||+..|..|.++
T Consensus 6 ~~~~~VvIIGaG~aGL~AA~~L~~~ 30 (516)
T 1rsg_A 6 PAKKKVIIIGAGIAGLKAASTLHQN 30 (516)
T ss_dssp CEEEEEEEECCBHHHHHHHHHHHHT
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhc
Confidence 3457899999999999999998763
No 391
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=65.29 E-value=5 Score=36.89 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=54.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhccc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~v 410 (477)
||+|.|| |-.|..+++.|++. ..| -+++.++++. .+...+......+.. +..+..++.+++++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~---~~g-------~~V~~~~r~~----~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~- 65 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKT---VPA-------SQIVAIVRNP----AKAQALAAQGITVRQADYGDEAALTSALQG- 65 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTT---SCG-------GGEEEEESCT----TTCHHHHHTTCEEEECCTTCHHHHHHHTTT-
T ss_pred CEEEEcCCchHHHHHHHHHHhh---CCC-------ceEEEEEcCh----HhhhhhhcCCCeEEEcCCCCHHHHHHHHhC-
Confidence 5889997 88888888877541 002 3677777631 110001111111111 11222457788876
Q ss_pred CCcEEEeccCCCC----CCCHHHHHHHHcCCCCcEEEEcC
Q 011816 411 KPTILIGSSGVGR----TFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 411 kptvLIG~S~~~g----~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+|++|=+++... ..+..++++|.+..-+.|||.=|
T Consensus 66 -~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 66 -VEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp -CSEEEECC--------CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred -CCEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 899998776421 24678888887766567887533
No 392
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=65.19 E-value=6.1 Score=40.48 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=28.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|||+|||.||+..|..+.+. |. ...++.++|+..
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~-----g~----~~~~V~lie~~~ 71 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTN-----YG----DANEIVVFDQNS 71 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----HG----GGSEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-----CC----CCCeEEEEECCC
Confidence 46899999999999999998764 20 124789999864
No 393
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=65.18 E-value=6.2 Score=40.63 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=29.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
...+|||+|||.||+..|..|.+. +. ..+|.++|+..-
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~-----~~-----g~~V~lie~~~~ 47 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRAR-----DP-----GARVLIVSEDPE 47 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHH-----ST-----TCEEEEEESSSS
T ss_pred CcCCEEEECChHHHHHHHHHHHhc-----CC-----CCeEEEEeCCCC
Confidence 356899999999999999988653 11 247999998743
No 394
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=65.16 E-value=4.1 Score=42.92 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=28.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+.+|||+|||.||+..|..|.. +.|+ ++.++|+..
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~----~~G~-------~v~viE~~~ 42 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHH----ELGL-------TTVGFDKAD 42 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH----TTCC-------CEEEEESSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH----cCCC-------CEEEEECCC
Confidence 35689999999999999998862 1354 688999864
No 395
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=64.91 E-value=6.2 Score=39.77 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=29.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
..+|||+|||.||+..|..+.+ .|. ..+|.++|+..-
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~-----~g~-----~~~V~lie~~~~ 40 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRA-----SGW-----EGNIRLVGDATV 40 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSCCS
T ss_pred CCcEEEEcCHHHHHHHHHHHHc-----cCc-----CCCEEEEECCCC
Confidence 4689999999999999998865 354 137999987643
No 396
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=64.91 E-value=5.7 Score=40.22 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.+|||+|||.||+..|..+.+. |. ++.++|+..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~-----G~-------~V~liE~~~ 38 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQL-----GF-------NTACVEKRG 38 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 35799999999999999988652 53 799999853
No 397
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=64.76 E-value=5.4 Score=37.58 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=24.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.--+||+|||+||+..|-.+.. .|+ ++.++|+.
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar-----~g~-------~v~lie~~ 38 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGR-----ARK-------QIALFDNN 38 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEECS
T ss_pred CCcCEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEeCC
Confidence 34468999999999998865543 353 68888874
No 398
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=64.46 E-value=6.2 Score=39.57 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
+.-|||+|||-||+..|..|.++
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~ 32 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQI 32 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhh
Confidence 45699999999999999998764
No 399
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=64.42 E-value=5.2 Score=41.40 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=29.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHh-------hCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISK-------QTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~-------~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|||+|||.||...|-.|...+.. ..|+ ++.++++.-
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~-------~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKL-------NITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSC-------EEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCC-------eEEEEeCCC
Confidence 46899999999999999998774310 0243 688999864
No 400
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=64.39 E-value=4.2 Score=41.89 Aligned_cols=35 Identities=17% Similarity=0.515 Sum_probs=28.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+.+|||+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~-----~G~-------~V~liE~~~ 40 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAM-----RGH-------RVLLLEREA 40 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHT-----TTC-------CEEEECSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHh-----CCC-------CEEEEccCC
Confidence 35689999999999999988754 364 688898875
No 401
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=64.38 E-value=6 Score=40.37 Aligned_cols=33 Identities=15% Similarity=0.405 Sum_probs=27.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..++|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~-----G~-------~V~liEk~ 58 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGAL-----GK-------RVAIAEEY 58 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-----cC-------EEEEEeCC
Confidence 46899999999999999888653 53 68999984
No 402
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}
Probab=64.35 E-value=8.8 Score=38.75 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=64.9
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCC---CCCCchhchhhccccCCCCCH
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR---KDSLQHFKKPWAHEHEPVNNL 403 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r---~~~l~~~k~~~a~~~~~~~~L 403 (477)
.++-.||.|+|| |..|-.+|-+|...- =+.... ...+.|+|...-...-. .| |.+.--+.........+.
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~----l~~~~~-~~eL~L~Di~~~~~~~~Gva~D-L~~~~~~~~~~~~~~~~~ 94 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGA----LLGPTT-PVELRLLDIEPALKALAGVEAE-LEDCAFPLLDKVVVTADP 94 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTT----TTCTTC-CEEEEEECCGGGHHHHHHHHHH-HHHTTCTTEEEEEEESCH
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhcc----ccCCCC-ccEEEEECCCCccccchhhhhh-hhhcCccCCCcEEEcCCh
Confidence 456679999997 999988888876520 011111 13688999632110000 01 222111111111112468
Q ss_pred HHHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCC
Q 011816 404 LDAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPT 449 (477)
Q Consensus 404 ~eav~~vkptvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 449 (477)
.+++++ .|++|=+.+.+ |- +=+++.+.+++++ +.-+|+-.|||.
T Consensus 95 ~~a~~~--advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPv 153 (345)
T 4h7p_A 95 RVAFDG--VAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPA 153 (345)
T ss_dssp HHHTTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred HHHhCC--CCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCc
Confidence 899988 99998666544 31 1234566677765 567888899996
No 403
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=64.34 E-value=5 Score=39.40 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.++||+|||.||+..|..+.+ .|. .-+|.++|+.
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~-----~g~-----~~~V~lie~~ 38 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRK-----LDG-----ETPLLMITAD 38 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHT-----TCS-----SSCEEEECSS
T ss_pred CCcEEEECChHHHHHHHHHHHh-----hCC-----CCCEEEEECC
Confidence 3679999999999999988854 353 2357778764
No 404
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=64.22 E-value=8.6 Score=38.46 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=28.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|+|+|||.+|+.+|..|.+. |- ..++.++++..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~-----g~-----~~~v~v~E~~~ 39 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERA-----FP-----DLNITLLEAGE 39 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHH-----CT-----TSEEEEECSSS
T ss_pred cccEEEECCCHHHHHHHHHHHHh-----CC-----CCCEEEEECCC
Confidence 46899999999999999998764 41 14788888753
No 405
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=64.18 E-value=7.2 Score=36.33 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=57.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhcc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 409 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~ 409 (477)
.+|+|.|| |-.|..+++.|++.- .| .+++.+|+.. .. ..+. .+..+.. +..+..++.++++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~---~g-------~~V~~~~r~~----~~-~~~~-~~~~~~~~D~~d~~~~~~~~~~ 66 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLY---GT-------ENVIASDIRK----LN-TDVV-NSGPFEVVNALDFNQIEHLVEV 66 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHH---CG-------GGEEEEESCC----CS-CHHH-HSSCEEECCTTCHHHHHHHHHH
T ss_pred ceEEEECCccHHHHHHHHHHHHhC---CC-------CEEEEEcCCC----cc-cccc-CCCceEEecCCCHHHHHHHHhh
Confidence 57999998 888999988886530 12 3678777641 11 1011 0111111 11222357788886
Q ss_pred cCCcEEEeccCCCCC---------------CCHHHHHHHHcCCCCcEEEEc
Q 011816 410 IKPTILIGSSGVGRT---------------FTKEVIEAMASFNEKPLILAL 445 (477)
Q Consensus 410 vkptvLIG~S~~~g~---------------Ft~evv~~Ma~~~erPIIFaL 445 (477)
.++|++|=+.+.... -|..+++++.+..-+.+||.=
T Consensus 67 ~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S 117 (312)
T 2yy7_A 67 HKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPS 117 (312)
T ss_dssp TTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCE
T ss_pred cCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 679999988775421 133567777665556788743
No 406
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=64.14 E-value=6.1 Score=40.41 Aligned_cols=36 Identities=14% Similarity=0.369 Sum_probs=28.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
..+|+|+|||.||+..|..|.+. |. ++.++++..-+
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~-----G~-------~V~vlE~~~~~ 39 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDS-----GL-------NVVVLEARDRV 39 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHT-----TC-------CEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEeCCCCC
Confidence 45799999999999999998753 53 67888876443
No 407
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=63.79 E-value=6.6 Score=39.77 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=27.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 3 ~~DVvVIGgG~aGl~aA~~la~~-----G-------~~V~liEk~ 35 (476)
T 3lad_A 3 KFDVIVIGAGPGGYVAAIKSAQL-----G-------LKTALIEKY 35 (476)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHH-----T-------CCEEEEECC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-----C-------CEEEEEeCC
Confidence 45799999999999999988763 5 378999986
No 408
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=63.77 E-value=4.8 Score=40.58 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=28.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+.+|+|+|||.||+..|..+.+ .|. ++.++|+..-
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~-----~G~-------~V~vlEk~~~ 38 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAK-----LGK-------SVTVFDNGKK 38 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHh-----CCC-------CEEEEeCCCC
Confidence 4579999999999999988765 353 6889998653
No 409
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=63.44 E-value=6.3 Score=39.07 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..|||+|||.+|+.+|-.|.+.. -| .++.++|+..
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~---pG-------~~V~vlE~~~ 71 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLA---PG-------RSLLLVEEGG 71 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC---TT-------SCEEEECSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhcC---CC-------CeEEEEeCCC
Confidence 68999999999999999886520 14 3688999763
No 410
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=63.41 E-value=5.6 Score=45.81 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.8
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
++|+..||+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 23 ~rL~~s~VlIvG~GGlGseiak~La~a-----GV------g~itlvD~D 60 (1015)
T 3cmm_A 23 LKMQTSNVLILGLKGLGVEIAKNVVLA-----GV------KSMTVFDPE 60 (1015)
T ss_dssp HHHTTCEEEEECCSHHHHHHHHHHHHH-----CC------SEEEEECCS
T ss_pred HHHhcCEEEEECCChHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 357899999999999999999999876 75 799999986
No 411
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=63.33 E-value=19 Score=35.33 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.++|+|.|||..|..++.++... | | +++.+|+.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-----G-----a--~Vi~~~~~ 213 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-----G-----L--EVWMANRR 213 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-----T-----C--EEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----C-----C--EEEEEeCC
Confidence 88999999998888887776542 5 2 68888764
No 412
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=63.27 E-value=70 Score=31.89 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=81.4
Q ss_pred HHhcCCCeeeeeecCCcccHHHHHHHHcCCCceec--c--CCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHH
Q 011816 270 KQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--D--DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTG 345 (477)
Q Consensus 270 ~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--D--DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~G 345 (477)
-.+| .++ |-+--++ +.+.+.+.+|-.++||.| | ..|=| =+||=++.-.+..| +|++.||+++|-|.= --
T Consensus 95 ls~~-~D~-iviR~~~-~~~~~~la~~~~~vPVINag~G~~~HPt--QaLaDl~Ti~e~~g-~l~gl~va~vGD~~~-~r 167 (310)
T 3csu_A 95 ISTY-VDA-IVMRHPQ-EGAARLATEFSGNVPVLNAGDGSNQHPT--QTLLDLFTIQETQG-RLDNLHVAMVGDLKY-GR 167 (310)
T ss_dssp HTTT-CSE-EEEEESS-TTHHHHHHHHCTTCCEEEEEETTSCCHH--HHHHHHHHHHHHHS-CSSSCEEEEESCTTT-CH
T ss_pred HHHh-CCE-EEEECCC-hhHHHHHHHhcCCCCEEcCccCCCCCch--HHHHHHHHHHHHhC-CcCCcEEEEECCCCC-Cc
Confidence 3456 444 4455665 456667778875799999 4 45555 45666666555554 799999999998631 12
Q ss_pred HHHHHHHHHHhhC-CCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEeccC
Q 011816 346 IAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSG 420 (477)
Q Consensus 346 ia~ll~~~~~~~~-G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvLIG~S~ 420 (477)
+|+-++.++.+ . |+ +|.++-.+|+--. +.-..+++.. ....++.|||++ +||+.-..-
T Consensus 168 va~Sl~~~~~~-~~g~-------~v~~~~P~~~~~~-------~~~~~~~~~~g~~~~~~~d~~eav~~--aDvvyt~~~ 230 (310)
T 3csu_A 168 TVHSLTQALAK-FDGN-------RFYFIAPDALAMP-------QYILDMLDEKGIAWSLHSSIEEVMAE--VDILYMTRV 230 (310)
T ss_dssp HHHHHHHHHHT-SSSC-------EEEEECCGGGCCC-------HHHHHHHHHTTCCEEECSCGGGTTTT--CSEEEECC-
T ss_pred hHHHHHHHHHh-CCCC-------EEEEECCcccccC-------HHHHHHHHHcCCeEEEEcCHHHHhcC--CCEEEECCc
Confidence 56777676655 4 65 7888888887332 2122233321 123689999998 999998755
Q ss_pred C
Q 011816 421 V 421 (477)
Q Consensus 421 ~ 421 (477)
+
T Consensus 231 q 231 (310)
T 3csu_A 231 Q 231 (310)
T ss_dssp -
T ss_pred c
Confidence 4
No 413
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=63.14 E-value=6.9 Score=39.73 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=28.5
Q ss_pred CccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
-...+|+|+|||.||+..|..|.++ |. ++.++++.
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~-----G~-------~V~VlE~~ 76 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRA-----GH-------DVTILEAN 76 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHT-----SC-------EEEEECSC
T ss_pred CCCceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecc
Confidence 3467999999999999999998753 53 68888876
No 414
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=62.94 E-value=6.6 Score=39.64 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=25.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|+|+|||.||+..|..|.+. |. ++.++++.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~-----g~-------~v~v~E~~ 71 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVA-----GF-------KTLLLEAR 71 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHT-----TC-------CEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHHC-----CC-------CEEEEeCC
Confidence 5899999999999999988753 53 56666665
No 415
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=62.85 E-value=5.9 Score=40.05 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
..|||+|||.||+..|-.+.+ .|+ ++.++|+...
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~-----~G~-------~V~llEk~~~ 60 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAE-----EGA-------NVLLLDKGNK 60 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHH-----CCC-------CEEEEECCCC
Confidence 579999999999999988764 353 6999998653
No 416
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=62.66 E-value=3.8 Score=45.11 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=31.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=
T Consensus 410 ~~~~vlvvG~GglG~~~~~~L~~~-----Gv------g~i~l~D~d~ 445 (805)
T 2nvu_B 410 DTCKVLVIGAGGLGCELLKNLALS-----GF------RQIHVIDMDT 445 (805)
T ss_dssp HTCCEEEECCSSHHHHHHHHHHTT-----TC------CEEEEEECCB
T ss_pred hCCeEEEECCCHHHHHHHHHHHHc-----CC------CcEEEECCCe
Confidence 788999999999999999998764 75 6999999873
No 417
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=62.58 E-value=14 Score=35.57 Aligned_cols=108 Identities=23% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc---cCCCCCCCchh------chhhcc-
Q 011816 327 GTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI---VSSRKDSLQHF------KKPWAH- 395 (477)
Q Consensus 327 ~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi---~~~r~~~l~~~------k~~~a~- 395 (477)
.+++..+|+|.|| |-.|..+++.|++. ..| -+++.+|+..-- ...+.+.+... +..+..
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~---~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQEN---HPK-------AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAA 75 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHH---CTT-------SEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEEC
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhh---CCC-------CeEEEEECCCccccccccchhhhhhhhhccccCceEEEC
Confidence 3577889999976 88888888887651 014 378888874210 00000111111 101111
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 396 EHEPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 396 ~~~~~~~L~eav~~vkptvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+..+..++.++ ...++|++|=+.+.... -|..+++++.+..-+ |||.=|
T Consensus 76 Dl~d~~~~~~~-~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS 138 (362)
T 3sxp_A 76 DINNPLDLRRL-EKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS 138 (362)
T ss_dssp CTTCHHHHHHH-TTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred CCCCHHHHHHh-hccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence 11111234454 23469999987774431 123566777665555 888655
No 418
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=62.46 E-value=6.5 Score=37.69 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=27.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.|+|+|||.+|+.+|-.|.+. |.+. --..++.++|+.-
T Consensus 2 dVvIIGgGi~Gls~A~~La~~-----G~~~-~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHER-----YHSV-LQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----HTTT-SSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHh-----cccc-CCCceEEEEECCC
Confidence 689999999999999888764 3100 0014799999873
No 419
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=62.37 E-value=6.3 Score=39.09 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=27.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+.+|+|+|||.||+..|..|.+. |. ++.++++..
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~-----g~-------~v~v~E~~~ 38 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKA-----GL-------SVAVIEARD 38 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEECCC
Confidence 356899999999999999988653 53 578888764
No 420
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=62.27 E-value=9.4 Score=35.35 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=55.1
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHH
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~ea 406 (477)
+-...||+|.|| |-.|..+++.|++ .| -+++.+|++ ..| +. +..++.++
T Consensus 9 ~~~~~~vlVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~------~~D-l~-----------d~~~~~~~ 58 (292)
T 1vl0_A 9 HHHHMKILITGANGQLGREIQKQLKG-----KN-------VEVIPTDVQ------DLD-IT-----------NVLAVNKF 58 (292)
T ss_dssp ---CEEEEEESTTSHHHHHHHHHHTT-----SS-------EEEEEECTT------TCC-TT-----------CHHHHHHH
T ss_pred ccccceEEEECCCChHHHHHHHHHHh-----CC-------CeEEeccCc------cCC-CC-----------CHHHHHHH
Confidence 345678999887 7888888887754 24 368888774 112 21 11346777
Q ss_pred hcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 407 VKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 407 v~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
++.+++|++|=+.+.... -+..+++++.+..- .|||.=|
T Consensus 59 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS 113 (292)
T 1vl0_A 59 FNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQIST 113 (292)
T ss_dssp HHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred HHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEech
Confidence 776679999988875431 03556777765444 7888544
No 421
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=62.23 E-value=8.1 Score=40.22 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=50.4
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccc-cCCCCCHHH
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLD 405 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e 405 (477)
..|...|++|+|.+.-..++++.|.+ .|+. -+.++-.. ..+.+... +...- ..+...+++
T Consensus 309 ~~l~Gkrv~i~~~~~~~~~l~~~L~e-----lGm~------vv~~~~~~------~~~~~~~~--~~~~v~~~D~~~le~ 369 (458)
T 3pdi_B 309 FMLSSARTAIAADPDLLLGFDALLRS-----MGAH------TVAAVVPA------RAAALVDS--PLPSVRVGDLEDLEH 369 (458)
T ss_dssp HHHTTCEEEEECCHHHHHHHHHHHHT-----TTCE------EEEEEESS------CCSCCTTT--TSSCEEESHHHHHHH
T ss_pred HhcCCCEEEEECCcHHHHHHHHHHHH-----CCCE------EEEEEECC------CChhhhhC--ccCcEEeCCHHHHHH
Confidence 45778899999999999999998843 4863 12222111 11111111 01000 011234778
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 011816 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 442 (477)
Q Consensus 406 av~~vkptvLIG~S~~~g~Ft~evv~~Ma~~~erPII 442 (477)
.++..+||.+||-|- .+.+.+.+ .-|.|
T Consensus 370 ~i~~~~pDllig~~~-----~~~~a~k~----gip~~ 397 (458)
T 3pdi_B 370 AARAGQAQLVIGNSH-----ALASARRL----GVPLL 397 (458)
T ss_dssp HHHHHTCSEEEECTT-----HHHHHHHT----TCCEE
T ss_pred HHHhcCCCEEEEChh-----HHHHHHHc----CCCEE
Confidence 888899999999654 23444544 46766
No 422
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=62.04 E-value=4.7 Score=41.14 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||.|+|+|..|..+|..+.+. |. +++++|++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~-----G~-------~V~~~d~~ 32 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSAR-----GH-------EVIGVDVS 32 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 799999999999999988753 52 68888874
No 423
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=61.96 E-value=6.6 Score=37.18 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=28.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
.+..|||+|||.||+..|..+.+. .| .++.++|+..-
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~----~G-------~~V~viEk~~~ 74 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKN----PN-------VQVAIIEQSVS 74 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTS----TT-------SCEEEEESSSS
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CC-------CeEEEEECCCC
Confidence 356899999999999999887541 14 36888887643
No 424
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=61.94 E-value=4.7 Score=38.47 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=27.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
...|+|+|||.+|+.+|-.|. . |. ++.++|+..
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~-----G~-------~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-A-----HG-------RVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-T-----TS-------CEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-C-----CC-------CEEEEECCC
Confidence 568999999999999998875 1 53 688999874
No 425
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=61.85 E-value=1e+02 Score=30.52 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceec----cCCCchHHHHHHHHHHHHHHhCCCCccceEEEeC
Q 011816 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN----DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLG 338 (477)
Q Consensus 263 defv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn----DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~G 338 (477)
...++ +-.+||.+++ -+--++...+.+++.+|- ++||.| |..|=| =+||=++.-.+..| +|++.||+++|
T Consensus 80 ~DTar-vls~~~~D~i-viR~~~~~~~~~~la~~~-~vPVINAG~g~~~HPt--QaLaDl~Ti~e~~g-~l~gl~va~vG 153 (291)
T 3d6n_B 80 FDTLK-TFEGLGFDYV-VFRVPFVFFPYKEIVKSL-NLRLVNAGDGTHQHPS--QGLIDFFTIKEHFG-EVKDLRVLYVG 153 (291)
T ss_dssp HHHHH-HHHHTTCSEE-EEEESSCCCSCHHHHHTC-SSEEEEEEETTTBCHH--HHHHHHHHHHHHHS-CCTTCEEEEES
T ss_pred HHHHH-HHHHhcCCEE-EEEcCChHHHHHHHHHhC-CCCEEeCccCCCcCcH--HHHHHHHHHHHHhC-CcCCcEEEEEC
Confidence 33443 3456754554 355665555444367774 699999 445544 45666666555554 79999999999
Q ss_pred c--chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccCCcEEE
Q 011816 339 A--GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILI 416 (477)
Q Consensus 339 A--GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vkptvLI 416 (477)
- |+ -+|+-++.++.+ .|+ +|.++-.+|+.-.. +.. +- ..-..++.|||++ +||+.
T Consensus 154 Dl~~~---rva~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~----~~~----~g--~~~~~d~~eav~~--aDvvy 210 (291)
T 3d6n_B 154 DIKHS---RVFRSGAPLLNM-FGA-------KIGVCGPKTLIPRD----VEV----FK--VDVFDDVDKGIDW--ADVVI 210 (291)
T ss_dssp CCTTC---HHHHHHHHHHHH-TTC-------EEEEESCGGGSCTT----GGG----GC--EEEESSHHHHHHH--CSEEE
T ss_pred CCCCC---chHHHHHHHHHH-CCC-------EEEEECCchhCCch----HHH----CC--CEEEcCHHHHhCC--CCEEE
Confidence 8 63 367777777666 475 79999999884322 221 10 1113689999998 99999
Q ss_pred eccCC
Q 011816 417 GSSGV 421 (477)
Q Consensus 417 G~S~~ 421 (477)
-+-.+
T Consensus 211 ~~~~q 215 (291)
T 3d6n_B 211 WLRLQ 215 (291)
T ss_dssp ECCCC
T ss_pred EeCcc
Confidence 86544
No 426
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=61.74 E-value=5 Score=38.32 Aligned_cols=101 Identities=13% Similarity=0.173 Sum_probs=60.4
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhc----------hhhcc-c
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----------KPWAH-E 396 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k----------~~~a~-~ 396 (477)
++..+|+|.|| |-.|..+++.|++ .| .+++.+|+..- .....+...+ ..+.. +
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D 87 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLK-----LN-------QVVIGLDNFST---GHQYNLDEVKTLVSTEQWSRFCFIEGD 87 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEEECCSS---CCHHHHHHHHHTSCHHHHTTEEEEECC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHH-----CC-------CEEEEEeCCCC---CchhhhhhhhhccccccCCceEEEEcc
Confidence 45679999996 8899999888865 25 36888877421 1100011111 01111 1
Q ss_pred cCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 397 HEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 397 ~~~~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
..+..++.++++ ++|++|=+.+.... -|..+++++.+..-+.+||.=|
T Consensus 88 l~d~~~~~~~~~--~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 88 IRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp TTCHHHHHHHTT--TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCHHHHHHHhc--CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 112235777887 49999988875321 1334788887776678898633
No 427
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=61.72 E-value=5.7 Score=36.80 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|++.+++|.|| |-.|.++|+.+++ .|. +++++|++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~-----~G~-------~V~~~~r~ 38 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVA-----AGA-------RVVLADVL 38 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHH-----TTC-------EEEEEESC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467889999997 4455556666543 353 68888764
No 428
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=61.69 E-value=44 Score=33.31 Aligned_cols=170 Identities=14% Similarity=0.177 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCcccHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhCCCCc-cceEEEeC
Q 011816 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLA-EHRFLFLG 338 (477)
Q Consensus 262 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alr~~g~~l~-d~riv~~G 338 (477)
+...++.+ .+| .++ |-+--++ +.+.+.+.+|- ++||.| || +-=-.=+||=++.-.+. .++++ ..||+++|
T Consensus 81 l~DTarvl-s~~-~D~-iviR~~~-~~~~~~lA~~~-~vPVINag~~-~~HPtQaLaDl~Ti~e~-~g~l~~gl~va~vG 153 (307)
T 3tpf_A 81 VKDTARVI-GAM-VDF-VMMRVNK-HETLLEFARYS-KAPVINALSE-LYHPTQVLGDLFTIKEW-NKMQNGIAKVAFIG 153 (307)
T ss_dssp HHHHHHHH-HHH-SSE-EEEECSC-HHHHHHHHHHC-SSCEEEEECS-SCCHHHHHHHHHHHHHT-TCCGGGCCEEEEES
T ss_pred HHHHHHHH-HHh-CCE-EEEecCC-hHHHHHHHHhC-CCCEEeCCCC-CcCcHHHHHHHHHHHHH-hCCCCCCCEEEEEc
Confidence 34444433 345 443 3355554 45556666665 689998 44 33334556666654444 44799 99999999
Q ss_pred cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcccc----CCCCCHHHHhcccCCcE
Q 011816 339 AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTI 414 (477)
Q Consensus 339 AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptv 414 (477)
-+. -+|+-++.++.+ .|+ +|.++-.+|+.... + +-..-+.+|+.. ....++.|||++ +||
T Consensus 154 D~~---~va~Sl~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~a~~~g~~~~~~~d~~eav~~--aDv 217 (307)
T 3tpf_A 154 DSN---NMCNSWLITAAI-LGF-------EISIAMPKNYKISP--E-IWEFAMKQALISGAKISLGYDKFEALKD--KDV 217 (307)
T ss_dssp CSS---HHHHHHHHHHHH-HTC-------EEEEECCTTCCCCH--H-HHHHHHHHHHHHTCEEEEESCHHHHHTT--CSE
T ss_pred CCC---ccHHHHHHHHHH-cCC-------EEEEECCCccCCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhcC--CCE
Confidence 974 378887777766 464 68888888774321 1 111112333321 123689999998 999
Q ss_pred EEeccCC----------------CCCCCHHHHHHHHcCCCCcEEEEcCCCCC-CCCCCHHH
Q 011816 415 LIGSSGV----------------GRTFTKEVIEAMASFNEKPLILALSNPTS-QSECTAEE 458 (477)
Q Consensus 415 LIG~S~~----------------~g~Ft~evv~~Ma~~~erPIIFaLSNPt~-~~E~tpe~ 458 (477)
+.-..=+ +=.+|++.++.+. +.-||+-.- |.. --|++.|-
T Consensus 218 vyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~---~~ai~mH~l-Pa~Rg~EI~~eV 274 (307)
T 3tpf_A 218 VITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVAN---KDAILLHCL-PAYRGYEVSEEI 274 (307)
T ss_dssp EEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSC---TTCEEEECS-CCCBTTTBCHHH
T ss_pred EEecCcccCCchhhHHHHHHHhcccccCHHHHHhcC---CCcEEECCC-CCCCCceeCHHH
Confidence 9765510 1125677766543 555666322 421 26888763
No 429
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=61.65 E-value=6.1 Score=41.29 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=27.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|||+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~-----~G~-------~V~vlEr~~ 59 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAH-----RQV-------GHLVVEQTD 59 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEeCCC
Confidence 4689999999999999988865 365 577888753
No 430
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=61.59 E-value=7.1 Score=39.80 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.+|||+|||.||+..|..+.+ .|. ++.++|+..
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~-----~G~-------~V~liE~~~ 39 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAAD-----EGL-------KVAIVERYK 39 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEeCCC
Confidence 4589999999999999987765 353 689999843
No 431
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=61.50 E-value=3.7 Score=41.39 Aligned_cols=34 Identities=38% Similarity=0.446 Sum_probs=26.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.+|+|+|||.||+..|..|.+ .|+ ++.++|+.-
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~-----~G~-------~V~vlE~~~ 39 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSR-----RGL-------KILLVDSKP 39 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSS-----SSC-------CEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEECCC
Confidence 3579999999999999988754 364 577777754
No 432
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=61.45 E-value=6.8 Score=39.68 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=24.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
||.|+|+|..|..+|..+.+ | .+++++|++
T Consensus 2 kI~VIG~G~vG~~~A~~La~------G-------~~V~~~d~~ 31 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL------Q-------NEVTIVDIL 31 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT------T-------SEEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHhC------C-------CEEEEEECC
Confidence 79999999999999988752 3 368888874
No 433
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=61.43 E-value=24 Score=32.43 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=41.8
Q ss_pred CCCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHH
Q 011816 326 GGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 404 (477)
Q Consensus 326 g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~ 404 (477)
..++++.+++|.||+ -.|.++|+.|++ .|. +++++|++- ++ +.... .+.-+..+..++.
T Consensus 10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~-----~G~-------~V~~~~r~~----~~---~~~~~-~~~~D~~~~~~~~ 69 (247)
T 1uzm_A 10 KPPFVSRSVLVTGGNRGIGLAIAQRLAA-----DGH-------KVAVTHRGS----GA---PKGLF-GVEVDVTDSDAVD 69 (247)
T ss_dssp CCCCCCCEEEETTTTSHHHHHHHHHHHH-----TTC-------EEEEEESSS----CC---CTTSE-EEECCTTCHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEEeCCh----HH---HHHhc-CeeccCCCHHHHH
Confidence 346788899999974 334445555543 353 688888741 11 21111 1111212223455
Q ss_pred HHhccc-----CCcEEEeccCCC
Q 011816 405 DAVKVI-----KPTILIGSSGVG 422 (477)
Q Consensus 405 eav~~v-----kptvLIG~S~~~ 422 (477)
++++.+ ++|+||=..+..
T Consensus 70 ~~~~~~~~~~g~id~lv~~Ag~~ 92 (247)
T 1uzm_A 70 RAFTAVEEHQGPVEVLVSNAGLS 92 (247)
T ss_dssp HHHHHHHHHHSSCSEEEEECSCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 555543 689999877654
No 434
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=61.41 E-value=8.7 Score=37.54 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.++.....++..+.|++..+.+ ..++|+|+|||..|...+.+... .|. ++++.+|+
T Consensus 157 ~~aa~~~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~aiqlak~-----~Ga------~~Vi~~~~ 212 (363)
T 3m6i_A 157 ENGAMLEPLSVALAGLQRAGVR-LGDPVLICGAGPIGLITMLCAKA-----AGA------CPLVITDI 212 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-TTCCEEEECCSHHHHHHHHHHHH-----TTC------CSEEEEES
T ss_pred HHHHhhhHHHHHHHHHHHcCCC-CCCEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 3444333455556677655433 46789999999888877765532 364 46887775
No 435
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=61.39 E-value=5.7 Score=39.18 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+|+|+|||.+|+..|..|.+. |.. +.-..++.++++.
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~-----G~~-~~~~~~V~vlEa~ 43 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKE-----IKE-KNLPLELTLVEAS 43 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH-----HTT-TTCSEEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHHh-----ccc-cCCCCCEEEEECC
Confidence 6899999999999999999875 300 0001367777775
No 436
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=61.24 E-value=6.1 Score=40.10 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+.+++|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~-----G~-------~V~liE~~ 52 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAEL-----GA-------RAAVVESH 52 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEEESS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 356899999999999999988653 53 68899965
No 437
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=61.24 E-value=9.2 Score=34.14 Aligned_cols=100 Identities=14% Similarity=0.062 Sum_probs=56.9
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHh
Q 011816 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAV 407 (477)
Q Consensus 330 ~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav 407 (477)
+..+|+|.|| |-.|..+++.|++. |- .-++++++++. ++.+.+. ....+.. +..+..++.+++
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~-----~~-----g~~V~~~~r~~----~~~~~~~-~~~~~~~~D~~d~~~~~~~~ 67 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEG-----SD-----KFVAKGLVRSA----QGKEKIG-GEADVFIGDITDADSINPAF 67 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHT-----TT-----TCEEEEEESCH----HHHHHTT-CCTTEEECCTTSHHHHHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhc-----CC-----CcEEEEEEcCC----CchhhcC-CCeeEEEecCCCHHHHHHHH
Confidence 4578999995 77888888887652 20 13688877642 0000010 0111111 112223577778
Q ss_pred cccCCcEEEeccCCCCC----------------C-------------CHHHHHHHHcCCCCcEEEEcC
Q 011816 408 KVIKPTILIGSSGVGRT----------------F-------------TKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 408 ~~vkptvLIG~S~~~g~----------------F-------------t~evv~~Ma~~~erPIIFaLS 446 (477)
+. +|++|=+.+.... | +..+++.|.+..-+.|||.=|
T Consensus 68 ~~--~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 68 QG--IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp TT--CSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred cC--CCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 75 8999977664321 1 467788887665567888543
No 438
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=61.06 E-value=6.9 Score=43.10 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.||.|+|+|..|.+||..++.+ |. +++++|.+
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~a-----G~-------~V~l~D~~ 344 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILS-----NY-------PVILKEVN 344 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT-----TC-------CEEEECSS
T ss_pred cEEEEEcCCHhhHHHHHHHHhC-----CC-------EEEEEECC
Confidence 5799999999999999998753 54 57777764
No 439
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=61.02 E-value=43 Score=34.24 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=77.0
Q ss_pred cccHHHHHHHHcCCCceec--cCCCchHHHHHHHHHHHHHHhCCC-Cccce--EEEeCc----chHHHHHHHHHHHHHHh
Q 011816 286 NHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGT-LAEHR--FLFLGA----GEAGTGIAELIALEISK 356 (477)
Q Consensus 286 ~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alr~~g~~-l~d~r--iv~~GA----GsAg~Gia~ll~~~~~~ 356 (477)
.+.+.+.+.+|- ++||.| ||.|= .=+||=++.-.+..|++ |++.| |.++|- | --+|+-++.++.+
T Consensus 145 ~~~~~~~lA~~~-~vPVINag~g~HP--tQaLaDl~TI~E~~g~~~l~glkvvva~vGDl~~~~---nrva~Sl~~~~~~ 218 (359)
T 1zq6_A 145 EDQVLKSFAKYS-PVPVINMETITHP--CQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLN---TAVANSALTIATR 218 (359)
T ss_dssp TCHHHHHHHHHC-SSCEEESSSSCCH--HHHHHHHHHHHHHHTSSCCTTCEEEEEECCCSSCCC---SHHHHHHHHHHHH
T ss_pred chHHHHHHHHhC-CCCEEeCCCCCCc--HHHHHHHHHHHHHhCCCcccCCeeEEEEEecccccc---cchHHHHHHHHHH
Confidence 456667777775 699999 77744 45677777777777765 99999 889998 6 3467777776665
Q ss_pred hCCCChhhhcCeEEEEccC-CcccCCCCCCCchhchhhcccc----CCCCCHHHHhcccCCcEEEecc
Q 011816 357 QTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSS 419 (477)
Q Consensus 357 ~~G~~~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~eav~~vkptvLIG~S 419 (477)
.|+ +|.++-.+ |+.-.. + +-..-+.+|+.. ....++.|||++ +||+.-..
T Consensus 219 -~G~-------~v~~~~P~~~~~~~~--~-~~~~~~~~a~~~g~~v~~~~d~~eav~~--aDvVyt~~ 273 (359)
T 1zq6_A 219 -MGM-------DVTLLCPTPDYILDE--R-YMDWAAQNVAESGGSLQVSHDIDSAYAG--ADVVYAKS 273 (359)
T ss_dssp -TTC-------EEEEECSSGGGCCCH--H-HHHHHHHHHHHHSCEEEEECCHHHHHTT--CSEEEEEC
T ss_pred -cCC-------EEEEEcCccccCCCH--H-HHHHHHHHHHHcCCeEEEECCHHHHhcC--CCEEEECC
Confidence 475 68888888 773321 1 111112333321 123689999998 99998765
No 440
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=60.96 E-value=7.7 Score=39.02 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=27.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+|||+|||.||+..|..+.+.. .| .++.++|+..
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~---~g-------~~V~lie~~~ 35 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADH---PD-------ADVTAYEMND 35 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC---TT-------CEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhhC---cC-------CcEEEEECCC
Confidence 6999999999999999987641 13 4789999865
No 441
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=60.91 E-value=7.8 Score=38.93 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=27.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+|||+|||.||+..|..+.+.. .| .++.++|+...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~~---~g-------~~V~lie~~~~ 36 (447)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNLH---PD-------AEIQWYEKGDF 36 (447)
T ss_dssp EEEEECSSHHHHHHHHHHHHHC---TT-------SEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHHhC---cC-------CeEEEEECCCc
Confidence 6999999999999999987631 12 47999998653
No 442
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=60.90 E-value=7.3 Score=42.47 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=28.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|||+|||.||+..|..+.+. |. ++.++|+..
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~-----G~-------~Vtlie~~~ 422 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMES-----GY-------TVHLTDTAE 422 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCCC
Confidence 46899999999999999998652 53 699999864
No 443
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=60.49 E-value=20 Score=32.92 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=40.1
Q ss_pred CCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchh------hcc-ccCC
Q 011816 328 TLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP------WAH-EHEP 399 (477)
Q Consensus 328 ~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~------~a~-~~~~ 399 (477)
++++.++||-||+. .|.++|+.+++ .|. +++++|++- .+ +....+. +.. +..+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~-----~G~-------~V~~~~r~~----~~---~~~~~~~~~~~~~~~~~Dv~~ 64 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQ-----EGA-------TVLGLDLKP----PA---GEEPAAELGAAVRFRNADVTN 64 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHH-----TTC-------EEEEEESSC----C---------------CEEEECCTTC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEEeCCh----HH---HHHHHHHhCCceEEEEccCCC
Confidence 57788999999853 45555555543 363 688888742 11 1111111 111 1112
Q ss_pred CCCHHHHhccc-----CCcEEEeccCCC
Q 011816 400 VNNLLDAVKVI-----KPTILIGSSGVG 422 (477)
Q Consensus 400 ~~~L~eav~~v-----kptvLIG~S~~~ 422 (477)
..++.++++.+ +.|+||=..+..
T Consensus 65 ~~~v~~~~~~~~~~~g~id~lv~nAg~~ 92 (257)
T 3tpc_A 65 EADATAALAFAKQEFGHVHGLVNCAGTA 92 (257)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 23455556544 799999776643
No 444
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=60.42 E-value=5.2 Score=39.49 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=27.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
..++||+|||.||+..|..+.+ .| ++.++|+.-..
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~-----~g--------~V~lie~~~~~ 42 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQ-----TY--------EVTVIDKEPVP 42 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTT-----TS--------EEEEECSSSSC
T ss_pred CCcEEEECCcHHHHHHHHHHhh-----cC--------CEEEEECCCCC
Confidence 3589999999999999998843 12 79999987543
No 445
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=60.26 E-value=21 Score=34.37 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
++...-.++..+.+.+..+ .-..++++|.|||..|...+.++.. .|. +.++.+|+
T Consensus 139 ~aa~l~~~~~~~~~~~~~~-~~~g~~VlV~GaG~vG~~aiq~ak~-----~G~------~~vi~~~~ 193 (346)
T 4a2c_A 139 DGAFIEPITVGLHAFHLAQ-GCENKNVIIIGAGTIGLLAIQCAVA-----LGA------KSVTAIDI 193 (346)
T ss_dssp GGGGHHHHHHHHHHHHHTT-CCTTSEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEES
T ss_pred HHHhchHHHHHHHHHHHhc-cCCCCEEEEECCCCcchHHHHHHHH-----cCC------cEEEEEec
Confidence 4443333444444554443 3467899999999988776654433 353 45666664
No 446
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=60.26 E-value=5.8 Score=36.69 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=54.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhccc
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~v 410 (477)
.||+|.|| |-.|..+++.|++ .| -+++.+++. ..| +. +..++.++++..
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~------~~D-~~-----------d~~~~~~~~~~~ 55 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNP-----EE-------YDIYPFDKK------LLD-IT-----------NISQVQQVVQEI 55 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCT-----TT-------EEEEEECTT------TSC-TT-----------CHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CC-------CEEEEeccc------ccC-CC-----------CHHHHHHHHHhc
Confidence 38999996 8888888887754 24 378888871 111 21 113577788877
Q ss_pred CCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 411 KPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 411 kptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
++|++|=+++.... -+..+++++.+..- .+||.=|
T Consensus 56 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS 106 (287)
T 3sc6_A 56 RPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYIST 106 (287)
T ss_dssp CCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred CCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEch
Confidence 89999988775431 03457777766554 4887544
No 447
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=60.23 E-value=9.3 Score=39.22 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=28.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+|||+|+|.||+..|..+... |- ..++.++|+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~-----g~-----~~~V~vie~~ 40 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKH-----HS-----RAHVDIYEKQ 40 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CS-----SCEEEEECSS
T ss_pred CceEEEECcCHHHHHHHHHHHhc-----CC-----CCCEEEEeCC
Confidence 35899999999999999998763 41 2478999976
No 448
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=60.15 E-value=9.3 Score=39.25 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD 373 (477)
+.++||+|||.||+..|..+.+. .| .++.++|
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~----~G-------~~V~liE 34 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASL----HK-------KRVAVID 34 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHH----HC-------CCEEEEE
T ss_pred cccEEEECCCHHHHHHHHHHHHH----cC-------CEEEEEe
Confidence 45899999999999999998761 15 3799999
No 449
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=60.10 E-value=6.6 Score=39.55 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~ 353 (477)
.+|||+|||-+|+..|-.|.++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~ 23 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAA 23 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT
T ss_pred CCEEEECCcHHHHHHHHHHHHC
Confidence 4799999999999999888653
No 450
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=60.01 E-value=8.9 Score=36.72 Aligned_cols=101 Identities=13% Similarity=0.200 Sum_probs=58.4
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhch----------hhcc-c
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK----------PWAH-E 396 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~----------~~a~-~ 396 (477)
++..+|+|.|| |-.|..+++.|++. | .+++.+|+.- ....+.+...+. .+.. +
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~-----g-------~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D 89 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKL-----D-------QKVVGLDNFA---TGHQRNLDEVRSLVSEKQWSNFKFIQGD 89 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHT-----T-------CEEEEEECCS---SCCHHHHHHHHHHSCHHHHTTEEEEECC
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHC-----C-------CEEEEEeCCC---ccchhhHHHHhhhcccccCCceEEEECC
Confidence 45678999998 88888888887652 5 3688888742 111011111111 1111 1
Q ss_pred cCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 397 HEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 397 ~~~~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
..+..++.++++ ++|++|=+.+..+. -+..+++++.+..-+.|||.=|
T Consensus 90 l~d~~~~~~~~~--~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 153 (352)
T 1sb8_A 90 IRNLDDCNNACA--GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS 153 (352)
T ss_dssp TTSHHHHHHHHT--TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCHHHHHHHhc--CCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 111235777777 59999998875431 1345667776655566887543
No 451
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=59.63 E-value=8.6 Score=37.76 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..+|+|+|||.||+..|..|.+. |. .++.++++..
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~-----g~------~~v~v~E~~~ 40 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQA-----GF------HDYTILERTD 40 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT-----TC------CCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-----CC------CcEEEEECCC
Confidence 456899999999999999988653 41 3577777643
No 452
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=59.56 E-value=8 Score=38.54 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=26.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.+|+|+|||.+|+..|..|.+. | .++.++|+..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~-----g-------~~v~v~E~~~ 36 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEK-----G-------HQVHIIDQRD 36 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-----T-------CEEEEEESSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-----C-------CcEEEEEecC
Confidence 46899999999999999988642 4 3677887753
No 453
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=59.52 E-value=6.8 Score=36.16 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=23.5
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
|++.+++|.|| |-.|.++|+.|++ .|. +++++|++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~-----~G~-------~V~~~~r~ 37 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLAR-----AGA-------NIVLNGFG 37 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 56788999998 4455556666654 353 68887764
No 454
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=59.50 E-value=8.8 Score=40.15 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
.+..+..|||+|||.||+..|-.+.+ .|. ++.++++...+
T Consensus 122 ~~~~~~DVvVVGaG~aGl~aA~~la~-----~G~-------~V~vlEk~~~~ 161 (571)
T 1y0p_A 122 APHDTVDVVVVGSGGAGFSAAISATD-----SGA-------KVILIEKEPVI 161 (571)
T ss_dssp CCSEECSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSSSS
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCCCC
Confidence 34456789999999999999988764 363 68899987654
No 455
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=59.47 E-value=7.8 Score=39.71 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=27.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|||+|||.||+..|..+.+.- ..| .++.++|+..
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~--~~G-------~~V~liE~~~ 38 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSH--PET-------TQVTVIDCDG 38 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC--TTT-------EEEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCc-------CEEEEEeCCC
Confidence 57999999999999999887530 003 3799999874
No 456
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=59.44 E-value=21 Score=35.52 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCcc-------cHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEE
Q 011816 263 DEFMSAVKQNYGEKVLIQFEDFANH-------NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFL 335 (477)
Q Consensus 263 defv~av~~~fGp~~lIq~EDf~~~-------~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv 335 (477)
-+.+++.-+.|.+..+|| |++.. .-+++..+|.-.+++.|-|-+|++.-. .+
T Consensus 94 ~~V~eaaL~~~~Ga~iIN--dIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~---------------~~---- 152 (300)
T 3k13_A 94 WEVIEAGLKCLQGKSIVN--SISLKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTA---------------AR---- 152 (300)
T ss_dssp HHHHHHHHHHCSSCCEEE--EECSTTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSH---------------HH----
T ss_pred HHHHHHHHHhcCCCCEEE--eCCcccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCH---------------HH----
Confidence 355666666554566776 66654 577899999999999998878876321 00
Q ss_pred EeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 336 ~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
-+.+++.+...++.+.|++ +++|| +|.
T Consensus 153 -------~~~i~~r~~~~~~~~~Gi~----~~~Ii-lDP 179 (300)
T 3k13_A 153 -------KIEVCERAYRLLVDKVGFN----PHDII-FDP 179 (300)
T ss_dssp -------HHHHHHHHHHHHHHHTCCC----GGGEE-EEC
T ss_pred -------HHHHHHHHHHHHHHHcCCC----HHHEE-EeC
Confidence 1257888877754457995 56776 676
No 457
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=59.42 E-value=10 Score=38.18 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+|+|+|||.+|+..|..|.+. |. ++.++++.
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~~~-----g~-------~v~vlE~~ 65 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLAGA-----GH-------QVTVLEAS 65 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHH-----TC-------EEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 46899999999999999998764 53 57777765
No 458
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=59.07 E-value=7.4 Score=36.48 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=43.4
Q ss_pred CCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-------ccC
Q 011816 327 GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-------EHE 398 (477)
Q Consensus 327 ~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-------~~~ 398 (477)
.+|+++++||-||+ -.|.++|+.+++ .|. +++++|++ . +.+......+.. +..
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~-----~G~-------~V~~~~r~----~---~~~~~~~~~~~~~~~~~~~Dv~ 67 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLAR-----AGA-------RVVLADLP----E---TDLAGAAASVGRGAVHHVVDLT 67 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHH-----TTC-------EEEEEECT----T---SCHHHHHHHHCTTCEEEECCTT
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEcCC----H---HHHHHHHHHhCCCeEEEECCCC
Confidence 36788899999974 345556666554 363 68888874 1 123222222110 111
Q ss_pred CCCCHHHHhccc-----CCcEEEeccCCC
Q 011816 399 PVNNLLDAVKVI-----KPTILIGSSGVG 422 (477)
Q Consensus 399 ~~~~L~eav~~v-----kptvLIG~S~~~ 422 (477)
+..++.++++.+ +.|+||=..+..
T Consensus 68 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 96 (271)
T 3tzq_B 68 NEVSVRALIDFTIDTFGRLDIVDNNAAHS 96 (271)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 123455555544 799999877654
No 459
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=58.83 E-value=21 Score=34.29 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
....+.+++..+.+ ..++++|+|||+.|...+.++..+ .| .+++.+|+
T Consensus 149 ~~ta~~~l~~~~~~-~g~~VlV~GaG~~g~~a~~~a~~~----~g-------~~Vi~~~~ 196 (348)
T 4eez_A 149 GVTTYKAIKVSGVK-PGDWQVIFGAGGLGNLAIQYAKNV----FG-------AKVIAVDI 196 (348)
T ss_dssp HHHHHHHHHHHTCC-TTCEEEEECCSHHHHHHHHHHHHT----SC-------CEEEEEES
T ss_pred eeeEEeeecccCCC-CCCEEEEEcCCCccHHHHHHHHHh----CC-------CEEEEEEC
Confidence 33446677766553 567899999999987766655432 23 46887776
No 460
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=58.81 E-value=17 Score=35.36 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCcc--ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 309 GTASVVLAGVVAALKLIGGTLAE--HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d--~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
++-...++..+.|+...++--.. ++++|.|| |..|..++.++.. .|. ++++.+|+
T Consensus 137 a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~-----~Ga------~~Vi~~~~ 194 (357)
T 2zb4_A 137 GAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHF-----LGC------SRVVGICG 194 (357)
T ss_dssp TTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHH-----TTC------SEEEEEES
T ss_pred HhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHH-----CCC------CeEEEEeC
Confidence 33344555556667333333346 89999998 9889888877654 353 36777776
No 461
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=58.65 E-value=8 Score=39.61 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=28.2
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.++.+||+|+|.|.+|+++|++|.+ .|. ++...|.+
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~-----~G~-------~V~~~D~~ 41 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAK-----LGA-------IVTVNDGK 41 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHH-----TTC-------EEEEEESS
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHh-----CCC-------EEEEEeCC
Confidence 4678999999999999999988865 353 56666663
No 462
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=58.62 E-value=5.2 Score=37.00 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|++.+++|.||+ -.|.++|+.+++ .|. +++++|++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~-----~G~-------~V~~~~r~ 39 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLG-----EGA-------KVAFSDIN 39 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHH-----TTC-------EEEEECSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 5778899999974 345555555543 353 68888764
No 463
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=58.57 E-value=31 Score=32.05 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=53.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhccc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~v 410 (477)
||+|.|| |-.|..+++.|++ .| -+++.+|+.. ..... .......+.. +..+.. +.++++.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~---~~~~~-~~~~~~~~~~~Dl~d~~-~~~~~~~- 63 (312)
T 3ko8_A 2 RIVVTGGAGFIGSHLVDKLVE-----LG-------YEVVVVDNLS---SGRRE-FVNPSAELHVRDLKDYS-WGAGIKG- 63 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEECCCS---SCCGG-GSCTTSEEECCCTTSTT-TTTTCCC-
T ss_pred EEEEECCCChHHHHHHHHHHh-----CC-------CEEEEEeCCC---CCchh-hcCCCceEEECccccHH-HHhhcCC-
Confidence 7999998 8899999888875 25 3688887641 11111 1011111111 111222 5555553
Q ss_pred CCcEEEeccCCCCC-C---------------CHHHHHHHHcCCCCcEEEEcC
Q 011816 411 KPTILIGSSGVGRT-F---------------TKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 411 kptvLIG~S~~~g~-F---------------t~evv~~Ma~~~erPIIFaLS 446 (477)
|++|=+.+.... . |..+++++.+..-+.|||.=|
T Consensus 64 --d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 113 (312)
T 3ko8_A 64 --DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASS 113 (312)
T ss_dssp --SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred --CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 999988774321 1 235677776666678888554
No 464
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=58.39 E-value=12 Score=36.57 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.++..+.|++..+.+ ..++|+|+|||+.|...+.+... .|. ++++.+|+
T Consensus 156 ~~~ta~~al~~~~~~-~g~~VlV~GaG~vG~~aiqlak~-----~Ga------~~Vi~~~~ 204 (356)
T 1pl8_A 156 PLSVGIHACRRGGVT-LGHKVLVCGAGPIGMVTLLVAKA-----MGA------AQVVVTDL 204 (356)
T ss_dssp HHHHHHHHHHHHTCC-TTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEES
T ss_pred hHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 344455666554433 46799999999888877765543 353 46777775
No 465
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=58.36 E-value=19 Score=32.65 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=24.5
Q ss_pred CCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+++.++||.||+ -.|.++|+.+++ .|. +++++|++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~-----~G~-------~V~~~~r~ 47 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAA-----HGA-------SVVLLGRT 47 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHH-----TTC-------EEEEEESC
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 35788999999984 344455555543 353 68888874
No 466
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=58.26 E-value=6.1 Score=40.95 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHH
Q 011816 333 RFLFLGAGEAGTGIAELIALEI 354 (477)
Q Consensus 333 riv~~GAGsAg~Gia~ll~~~~ 354 (477)
-||++|||.+|+++|-.|.+..
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~ 62 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDAL 62 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHH
T ss_pred cEEEEcccHHHHHHHHHHHhcC
Confidence 4899999999999998887653
No 467
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=58.11 E-value=22 Score=34.75 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
..+.+++..+.+...++++|+|||..|...+.+.... |. +++.+|+
T Consensus 167 ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-----Ga-------~Vi~~~~ 212 (357)
T 2cf5_A 167 TVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAM-----GH-------HVTVISS 212 (357)
T ss_dssp HHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEEES
T ss_pred HHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeC
Confidence 3456666555443678999999999888887665432 52 5777765
No 468
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=57.84 E-value=7.1 Score=39.04 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=26.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+.+|+|+|||.+|+..|..|.+ .|. ++.++++..
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~-----~g~-------~v~v~E~~~ 49 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRS-----RGT-------DAVLLESSA 49 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHT-----TTC-------CEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEEcCC
Confidence 3589999999999999988864 253 577777753
No 469
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=57.63 E-value=8 Score=39.12 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=26.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+..++|+|||.||+..|..+.+ .|. ++.++|+.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~-----~G~-------~V~liEk~ 37 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAA-----LGK-------KVAIAEEF 37 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT-----TTC-------CEEEEESS
T ss_pred CCcEEEECcCHHHHHHHHHHHh-----CCC-------EEEEEeCC
Confidence 3579999999999999988764 353 68899984
No 470
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=57.54 E-value=8.8 Score=40.57 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=28.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCc
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GL 377 (477)
+..|||+|||.+|+++|-.+.. .|+ ++.++|+..+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~-----rG~-------~V~LlE~~~~ 66 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAA-----SGI-------KTGLIEMQDF 66 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEeCCCC
Confidence 4679999999999999998865 364 6889997643
No 471
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=57.43 E-value=20 Score=33.49 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=49.5
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcc
Q 011816 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (477)
Q Consensus 331 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~ 409 (477)
..+|+|.|| |-.|..+++.|++ .| -+++.+|+. +.. + . .+.-+..+..++.++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~------~~~---~-~-~~~~Dl~d~~~~~~~~~~ 58 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQ-----NN-------WHAVGCGFR------RAR---P-K-FEQVNLLDSNAVHHIIHD 58 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHT-----TT-------CEEEEEC-----------------------------CHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHh-----CC-------CeEEEEccC------CCC---C-C-eEEecCCCHHHHHHHHHh
Confidence 358999998 8888888888764 24 367877753 101 0 1 111122223567788887
Q ss_pred cCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 011816 410 IKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 410 vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+++|++|=+.+.... -+..+++++.+.. ..|||.=|
T Consensus 59 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS 110 (315)
T 2ydy_A 59 FQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG-AFLIYISS 110 (315)
T ss_dssp HCCSEEEECC-------------------CHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred hCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEch
Confidence 789999988765321 1245666666544 36777443
No 472
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=57.40 E-value=5.5 Score=36.75 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=55.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhcc-ccCCCCCHHHHhccc
Q 011816 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 410 (477)
Q Consensus 333 riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~eav~~v 410 (477)
+|+|.|| |-.|..+++.|++. ..| -+++.++++. .+...+......+.. +..+..++.+++++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~---~~g-------~~V~~~~r~~----~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~- 66 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKK---VPA-------SQIIAIVRNV----EKASTLADQGVEVRHGDYNQPESLQKAFAG- 66 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTT---SCG-------GGEEEEESCT----TTTHHHHHTTCEEEECCTTCHHHHHHHTTT-
T ss_pred eEEEEcCCchHHHHHHHHHHHh---CCC-------CeEEEEEcCH----HHHhHHhhcCCeEEEeccCCHHHHHHHHhc-
Confidence 6899998 88888888877541 002 3677777641 110101111111111 11222457788876
Q ss_pred CCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEEcC
Q 011816 411 KPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS 446 (477)
Q Consensus 411 kptvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS 446 (477)
+|++|=+++..- .-+..+++++.+..-+.|||.=|
T Consensus 67 -~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 67 -VSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp -CSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred -CCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 899998877431 12356777777655567887533
No 473
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=57.26 E-value=16 Score=35.12 Aligned_cols=50 Identities=14% Similarity=-0.055 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 314 VLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.++..+.|++....--..++++|.|| |..|..+++++.. .|. +++.+|+.
T Consensus 129 ~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~-----~G~-------~Vi~~~~~ 179 (333)
T 1wly_A 129 KGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARH-----LGA-------TVIGTVST 179 (333)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHH-----TTC-------EEEEEESS
T ss_pred hHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 34444555553344445789999996 9999888887754 352 68887764
No 474
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=57.10 E-value=6.5 Score=38.55 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=29.9
Q ss_pred CCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 328 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+|++.++||+|+|..|..-+++|+.+ | .++.++|.+
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~-----G-------a~VtViap~ 45 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPT-----G-------CKLTLVSPD 45 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGG-----T-------CEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhC-----C-------CEEEEEcCC
Confidence 57889999999999999999998763 5 368888864
No 475
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=56.78 E-value=7.8 Score=41.88 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=28.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|||+|||.||+..|-.|.....+..|+ ++.++|+..
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi-------~v~viE~~~ 46 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDL-------KVRIIDKRS 46 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTC-------CEEEECSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCC-------CEEEEeCCC
Confidence 457999999999999999887621111365 588888753
No 476
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=56.75 E-value=12 Score=35.73 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=45.2
Q ss_pred CCCccceEEEeCcc---hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhh-----cc-cc
Q 011816 327 GTLAEHRFLFLGAG---EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-----AH-EH 397 (477)
Q Consensus 327 ~~l~d~riv~~GAG---sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~-----a~-~~ 397 (477)
.+|++.++||.||+ -.|.+||+.+++ .|. +++++|++. ...+.+....+.+ .. +.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~-----~G~-------~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~Dv 89 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCA-----QGA-------EVALTYLSE----TFKKRVDPLAESLGVKLTVPCDV 89 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHH-----TTC-------EEEEEESSG----GGHHHHHHHHHHHTCCEEEECCT
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHH-----CCC-------EEEEEeCCh----HHHHHHHHHHHhcCCeEEEEcCC
Confidence 45788999999996 455568887765 363 688888751 1101111111111 11 11
Q ss_pred CCCCCHHHHhccc-----CCcEEEeccCCC
Q 011816 398 EPVNNLLDAVKVI-----KPTILIGSSGVG 422 (477)
Q Consensus 398 ~~~~~L~eav~~v-----kptvLIG~S~~~ 422 (477)
.+..++.++++.+ +.|+||=..+..
T Consensus 90 ~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 119 (296)
T 3k31_A 90 SDAESVDNMFKVLAEEWGSLDFVVHAVAFS 119 (296)
T ss_dssp TCHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 1223455566554 799999877654
No 477
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=56.73 E-value=10 Score=37.86 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
.+|+|+|||.||+..|-.|.+ .|.+ .++.++++..
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~-----~G~~-----~~V~vlEa~~ 37 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSR-----APCP-----PKVVLVESSE 37 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHT-----SSSC-----CEEEEECSSS
T ss_pred ceEEEECCcHHHHHHHHHHHh-----CCCC-----CcEEEEeCCC
Confidence 579999999999999999865 2531 2788888753
No 478
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=56.61 E-value=8.9 Score=40.24 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=26.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.+.+++|+|||.||+..|..+.+. |. ++.++|+
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~-----g~-------~v~liE~ 138 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKY-----GA-------KTAVLDY 138 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECC
T ss_pred ccccEEEECCCccHHHHHHHHHhC-----CC-------eEEEEec
Confidence 356899999999999999888652 53 6888986
No 479
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=56.55 E-value=25 Score=33.95 Aligned_cols=77 Identities=17% Similarity=0.333 Sum_probs=45.8
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHHHhcccC
Q 011816 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (477)
Q Consensus 333 riv~~G-AGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~eav~~vk 411 (477)
||+|.| +|-.|-.+++.|++. |. -+++.+|+. .+..+|.+++++
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~-----g~------~~v~~~d~~----------------------~d~~~l~~~~~~-- 46 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTST-----TD------HHIFEVHRQ----------------------TKEEELESALLK-- 46 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH-----CC------CEEEECCTT----------------------CCHHHHHHHHHH--
T ss_pred EEEEECCCCHHHHHHHHHHHhC-----CC------CEEEEECCC----------------------CCHHHHHHHhcc--
Confidence 799999 488999998888763 42 257766664 011235556654
Q ss_pred CcEEEeccCCCC------------CCCHHHHHHHHcCCCC-cEEEE
Q 011816 412 PTILIGSSGVGR------------TFTKEVIEAMASFNEK-PLILA 444 (477)
Q Consensus 412 ptvLIG~S~~~g------------~Ft~evv~~Ma~~~er-PIIFa 444 (477)
+|++|=+.+... ..+..+++++.+..-+ .+||.
T Consensus 47 ~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~ 92 (369)
T 3st7_A 47 ADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLS 92 (369)
T ss_dssp CSEEEECCCSBCTTCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEE
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 777775554321 1234566666654433 56663
No 480
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=56.19 E-value=7.6 Score=40.95 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=27.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+--|||+|||.+|+++|..+.. .|+ ++.++++.
T Consensus 18 ~~DVvVIGgGi~Gl~~A~~La~-----~G~-------~V~LlEk~ 50 (561)
T 3da1_A 18 QLDLLVIGGGITGAGIALDAQV-----RGI-------QTGLVEMN 50 (561)
T ss_dssp CEEEEEECCSHHHHHHHHHHHT-----TTC-------CEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 4679999999999999988764 365 68889886
No 481
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=56.02 E-value=8.5 Score=41.27 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..+|||+|+|.||+..|..+.+ .| .++.++|+..
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~-----~g-------~~V~lie~~~ 406 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAA-----RG-------HQVTLFDAHS 406 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-----TT-------CEEEEEESSS
T ss_pred CCeEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEeCCC
Confidence 4689999999999999998864 24 3699999864
No 482
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=55.94 E-value=16 Score=35.63 Aligned_cols=48 Identities=21% Similarity=0.093 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.++..+.|++..+.+ ..++|+|.|||..|...+.+... .|. +++.+|+
T Consensus 153 ~~~ta~~al~~~~~~-~g~~VlV~GaG~vG~~a~qla~~-----~Ga-------~Vi~~~~ 200 (352)
T 1e3j_A 153 PLSVGVHACRRAGVQ-LGTTVLVIGAGPIGLVSVLAAKA-----YGA-------FVVCTAR 200 (352)
T ss_dssp HHHHHHHHHHHHTCC-TTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEES
T ss_pred hHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHH-----cCC-------EEEEEcC
Confidence 444455666554432 46899999999888777765542 353 3777764
No 483
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=55.89 E-value=21 Score=34.11 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=59.0
Q ss_pred CccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCch-----hchhhcc-ccCCCC
Q 011816 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-----FKKPWAH-EHEPVN 401 (477)
Q Consensus 329 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~-----~k~~~a~-~~~~~~ 401 (477)
++..+|+|.|| |-.|..+++.|++ .| -+++.+|+.. .+...+.. .+..+.. +..+..
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 70 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQT-----MG-------ATVKGYSLTA----PTVPSLFETARVADGMQSEIGDIRDQN 70 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEEESSC----SSSSCHHHHTTTTTTSEEEECCTTCHH
T ss_pred hCCCEEEEECCCchHHHHHHHHHHh-----CC-------CeEEEEeCCC----cccchhhHhhccCCceEEEEccccCHH
Confidence 44578999996 8888888888765 25 3688888742 11111110 0111111 111223
Q ss_pred CHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCC-CCcEEEEcC
Q 011816 402 NLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 446 (477)
Q Consensus 402 ~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 446 (477)
++.++++.+++|++|=+.+.... -|..+++++.+.. -+.|||.=|
T Consensus 71 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS 132 (357)
T 1rkx_A 71 KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS 132 (357)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred HHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 57778887789999988875321 0233566655543 467888655
No 484
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Probab=55.88 E-value=1.5 Score=41.67 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=17.0
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 011816 332 HRFLFLGAGEAGTGIAELIAL 352 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~ 352 (477)
.||.|+|+|..|.++|..+..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~ 23 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKD 23 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-
T ss_pred ceEEEEeCCHHHHHHHHHHHH
Confidence 379999999999999887754
No 485
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=55.74 E-value=16 Score=33.72 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCCccceEEEeCcc-h--HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 327 GTLAEHRFLFLGAG-E--AGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 327 ~~l~d~riv~~GAG-s--Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.++++.++||.||+ . .|.++|+.+++ .|. +++++|+.
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~-----~G~-------~V~~~~r~ 42 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHE-----AGA-------RLIFTYAG 42 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHH-----TTC-------EEEEEESS
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHH-----CCC-------EEEEecCc
Confidence 35788899999985 3 56667777765 363 68888774
No 486
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=55.66 E-value=15 Score=35.69 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 318 VVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
.+.|++..+ --.+++++|.|| |..|..+++++.. .|. +++.+|+
T Consensus 158 a~~~l~~~~-~~~g~~vlV~Ga~ggiG~~~~~~a~~-----~Ga-------~V~~~~~ 202 (347)
T 2hcy_A 158 VYKALKSAN-LMAGHWVAISGAAGGLGSLAVQYAKA-----MGY-------RVLGIDG 202 (347)
T ss_dssp HHHHHHTTT-CCTTCEEEEETTTSHHHHHHHHHHHH-----TTC-------EEEEEEC
T ss_pred HHHHHHhcC-CCCCCEEEEECCCchHHHHHHHHHHH-----CCC-------cEEEEcC
Confidence 355665442 234689999999 8888888877653 352 6888875
No 487
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=55.56 E-value=8.1 Score=43.93 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=28.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..+|+|+|||.||+..|..|.+. |. +++.++|++
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~-----G~------~~Vtv~E~~ 220 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARL-----GY------SDITIFEKQ 220 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHT-----TC------CCEEEEESS
T ss_pred CCEEEEECccHHHHHHHHHHHhc-----CC------CcEEEEeCC
Confidence 56899999999999999998753 53 268999986
No 488
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=55.55 E-value=33 Score=31.57 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=42.2
Q ss_pred CCCccceEEEeCcc-hHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhccccCCCCCHHH
Q 011816 327 GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (477)
Q Consensus 327 ~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 405 (477)
..+++.+++|.||+ -.|.++|+.+++ .|. +++++|++- ...+.+. +..+.-+. ..++.+
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~-----~G~-------~V~~~~r~~----~~~~~~~--~~~~~~D~--~~~~~~ 74 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQ-----EGA-------EVTICARNE----ELLKRSG--HRYVVCDL--RKDLDL 74 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHH-----TTC-------EEEEEESCH----HHHHHTC--SEEEECCT--TTCHHH
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHH-----CCC-------EEEEEcCCH----HHHHhhC--CeEEEeeH--HHHHHH
Confidence 45788999999984 445556666543 353 688888753 0000010 00111111 235666
Q ss_pred Hhccc-CCcEEEeccCCC
Q 011816 406 AVKVI-KPTILIGSSGVG 422 (477)
Q Consensus 406 av~~v-kptvLIG~S~~~ 422 (477)
+++.+ ++|+||=..+..
T Consensus 75 ~~~~~~~iD~lv~~Ag~~ 92 (249)
T 1o5i_A 75 LFEKVKEVDILVLNAGGP 92 (249)
T ss_dssp HHHHSCCCSEEEECCCCC
T ss_pred HHHHhcCCCEEEECCCCC
Confidence 66655 799999877653
No 489
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=55.32 E-value=24 Score=33.94 Aligned_cols=101 Identities=14% Similarity=0.182 Sum_probs=57.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchh----------chhhcc-ccCC
Q 011816 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPWAH-EHEP 399 (477)
Q Consensus 332 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~----------k~~~a~-~~~~ 399 (477)
.+|+|.|| |-.|..+++.|++ .| -+++++|+..--. ....+... +..+.. +..+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~-----~g-------~~V~~~~r~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d 90 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLE-----KG-------YEVHGIVRRSSSF--NTGRIEHLYKNPQAHIEGNMKLHYGDLTD 90 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-----TT-------CEEEEEECCCSSC--CCTTTGGGC---------CEEEEECCTTC
T ss_pred cEEEEECCCchHHHHHHHHHHH-----CC-------CEEEEEECCcccc--chhhHHHHhhhhccccCCCceEEEccCCC
Confidence 57999996 8888888888765 25 3688888752100 00112111 111111 1112
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCC---CcEEEEcC
Q 011816 400 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNE---KPLILALS 446 (477)
Q Consensus 400 ~~~L~eav~~vkptvLIG~S~~~g~----------------Ft~evv~~Ma~~~e---rPIIFaLS 446 (477)
..++.++++.+++|++|=+.+.... -+..+++++.+..- +.|||.=|
T Consensus 91 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS 156 (375)
T 1t2a_A 91 STCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAST 156 (375)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecc
Confidence 2357788888889999988775421 12345666655443 57887543
No 490
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=55.28 E-value=6.4 Score=36.22 Aligned_cols=77 Identities=26% Similarity=0.356 Sum_probs=44.1
Q ss_pred CCCccceEEEeCcch-HHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcccCCCCCCCchhchhhc-------cccC
Q 011816 327 GTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-------HEHE 398 (477)
Q Consensus 327 ~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~~a-------~~~~ 398 (477)
.++++.++||.||+. .|.++|+.+++ .|. +++++|++- +.+....+.+. -+..
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~-----~G~-------~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~D~~ 65 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAK-----GGA-------KVVIVDRDK-------AGAERVAGEIGDAALAVAADIS 65 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHH-----TTC-------EEEEEESCH-------HHHHHHHHHHCTTEEEEECCTT
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEcCCH-------HHHHHHHHHhCCceEEEEecCC
Confidence 467888999999864 45566666654 353 688888741 11222222111 0111
Q ss_pred CCCCHHHHhccc-----CCcEEEeccCCC
Q 011816 399 PVNNLLDAVKVI-----KPTILIGSSGVG 422 (477)
Q Consensus 399 ~~~~L~eav~~v-----kptvLIG~S~~~ 422 (477)
+..++.++++.+ ++|+||=..+..
T Consensus 66 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 94 (261)
T 3n74_A 66 KEADVDAAVEAALSKFGKVDILVNNAGIG 94 (261)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 223455666655 799999877653
No 491
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=55.23 E-value=12 Score=37.34 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 011816 331 EHRFLFLGAGEAGTGIAELIALE 353 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~ 353 (477)
+.+|+|+|||.||+..|..|.+.
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~ 29 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQ 29 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHh
Confidence 56899999999999999998753
No 492
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=55.21 E-value=11 Score=39.40 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=29.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCCcc
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~GLi 378 (477)
.+..|||+|||.||+..|-.+.+. |+ ++.++++...+
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~-----G~-------~V~vlEk~~~~ 156 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKA-----GA-------NVILVDKAPFS 156 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHH-----TC-------CEEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEeCCCCC
Confidence 456899999999999999887653 53 68899987654
No 493
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=55.20 E-value=22 Score=34.10 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCCccceEEEeCc-chHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 313 VVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 313 V~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
+.++..+.|+.....--..++++|.|| |..|..+++++.. .|. +++.+|+
T Consensus 132 ~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~-----~Ga-------~Vi~~~~ 182 (336)
T 4b7c_A 132 MTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARL-----KGC-------RVVGIAG 182 (336)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHH-----TTC-------EEEEEES
T ss_pred cHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 445555667744455556789999999 9989888877653 352 6777764
No 494
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=55.20 E-value=9.7 Score=40.74 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
..|||+|||.||+.+|-.|.+ .|. ++.++|+..
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~-----~G~-------~V~vlEk~~ 305 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLR-----RGW-------QVTLYCADE 305 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-----TTC-------EEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCCC
Confidence 689999999999999988764 353 799999853
No 495
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=55.16 E-value=7.8 Score=41.68 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=27.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccCC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~G 376 (477)
+..|||+|||.||+.+|-.|.+ .|. ++.++|+..
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~-----~G~-------~V~vlEk~~ 297 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQR-----RGA-------VVTLYCADA 297 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHT-----TTC-------CEEEEESSS
T ss_pred CCCEEEECCcHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 3689999999999999988764 363 689999863
No 496
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=55.03 E-value=11 Score=38.32 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=26.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 330 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
.+.+++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~-----g-------~~v~v~E~~ 61 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASS-----G-------QRVLIVDRR 61 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT-----T-------CCEEEECSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-----C-------CceEEEecc
Confidence 356899999999999999887652 5 357788875
No 497
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=54.94 E-value=7.9 Score=39.80 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 332 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
..++|+|||+||+..|..+.+ .| .++.++|+.
T Consensus 9 ~DvvVIGgG~aGl~aA~~la~-----~G-------~~V~liE~~ 40 (492)
T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAKK-----HT-------DKVVLIEGG 40 (492)
T ss_dssp EEEEEECCSHHHHHHHHHHHT-----TC-------SCEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEeCC
Confidence 579999999999999988764 35 378899975
No 498
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=54.94 E-value=6.7 Score=41.83 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEccC
Q 011816 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (477)
Q Consensus 331 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~~ 375 (477)
+.+|||+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~-----~G~-------kV~VlEr~ 139 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQ-----MGF-------NPIIVERG 139 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHH-----TTC-------CCEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEEcc
Confidence 4689999999999999988865 364 57788876
No 499
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=54.89 E-value=22 Score=35.18 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
++..+.|++.. .--..++|+|+|||..|...+.+... .|. ++++.+|+
T Consensus 171 ~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlAk~-----~Ga------~~Vi~~~~ 218 (398)
T 1kol_A 171 LPTGYHGAVTA-GVGPGSTVYVAGAGPVGLAAAASARL-----LGA------AVVIVGDL 218 (398)
T ss_dssp HHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEES
T ss_pred HHHHHHHHHHc-CCCCCCEEEEECCcHHHHHHHHHHHH-----CCC------CeEEEEcC
Confidence 44456666643 33356899999999888877765532 363 46887775
No 500
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=54.56 E-value=24 Score=34.47 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=26.3
Q ss_pred CCCccceEEEeCcchHHHHHHHHHHHHHHhhCCCChhhhcCeEEEEcc
Q 011816 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (477)
Q Consensus 327 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~~~eeA~~~i~lvD~ 374 (477)
..-..++|+|+|||..|...+.+.... |. ++++.+|+
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~-----Ga------~~Vi~~~~ 223 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVA-----GA------SRIIGVDI 223 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEcC
Confidence 334568999999998888877665432 53 46888775
Done!