Query 011817
Match_columns 477
No_of_seqs 254 out of 1859
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00466 actin-like protein; P 100.0 1.4E-71 3E-76 575.4 29.5 328 111-460 3-372 (380)
2 PTZ00452 actin; Provisional 100.0 1.3E-71 2.9E-76 574.8 28.9 320 124-460 4-367 (375)
3 PTZ00281 actin; Provisional 100.0 4.1E-70 9E-75 564.4 27.9 323 119-460 2-368 (376)
4 KOG0676 Actin and related prot 100.0 7.3E-71 1.6E-75 555.7 21.7 317 126-461 8-365 (372)
5 PTZ00004 actin-2; Provisional 100.0 2.5E-67 5.5E-72 544.2 28.5 318 126-460 7-370 (378)
6 KOG0679 Actin-related protein 100.0 3.9E-67 8.5E-72 515.3 25.0 325 116-460 4-417 (426)
7 PTZ00280 Actin-related protein 100.0 1.7E-64 3.6E-69 529.1 29.0 321 126-461 5-403 (414)
8 KOG0677 Actin-related protein 100.0 2.2E-64 4.7E-69 473.0 21.3 320 126-460 5-380 (389)
9 PF00022 Actin: Actin; InterP 100.0 1.1E-63 2.5E-68 519.2 26.2 322 120-460 1-385 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 4.2E-61 9.1E-66 497.0 26.7 318 126-460 2-365 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 8.8E-59 1.9E-63 479.4 27.1 320 127-461 1-366 (371)
12 COG5277 Actin and related prot 100.0 1.1E-55 2.4E-60 460.1 26.1 318 126-460 7-436 (444)
13 KOG0680 Actin-related protein 100.0 4.5E-54 9.9E-59 413.9 20.3 318 125-459 3-390 (400)
14 KOG0681 Actin-related protein 100.0 2E-45 4.3E-50 374.0 23.4 328 126-469 24-643 (645)
15 KOG0678 Actin-related protein 100.0 2.9E-44 6.3E-49 346.6 12.0 323 126-463 5-406 (415)
16 KOG0797 Actin-related protein 100.0 1.8E-30 3.9E-35 263.3 18.3 279 167-460 205-607 (618)
17 PRK13930 rod shape-determining 100.0 1.2E-28 2.5E-33 251.3 19.3 275 127-440 10-327 (335)
18 PRK13927 rod shape-determining 100.0 2.4E-27 5.3E-32 241.7 18.8 273 127-440 7-323 (334)
19 PRK13929 rod-share determining 99.9 1.6E-25 3.5E-30 228.4 20.3 273 127-438 6-323 (335)
20 TIGR00904 mreB cell shape dete 99.9 2.5E-25 5.3E-30 226.9 19.7 275 128-440 5-326 (333)
21 PRK13928 rod shape-determining 99.9 5.6E-23 1.2E-27 209.9 19.2 276 128-440 6-322 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 5.4E-22 1.2E-26 200.0 16.9 277 127-440 3-320 (326)
23 COG1077 MreB Actin-like ATPase 99.7 2.6E-16 5.6E-21 154.5 17.3 280 127-442 8-333 (342)
24 TIGR02529 EutJ ethanolamine ut 99.6 1.2E-13 2.7E-18 134.5 17.9 229 130-437 2-238 (239)
25 PRK15080 ethanolamine utilizat 99.5 2.7E-12 5.9E-17 127.1 21.2 234 126-439 25-267 (267)
26 CHL00094 dnaK heat shock prote 99.3 3.5E-10 7.6E-15 124.8 22.9 211 186-441 136-376 (621)
27 PRK00290 dnaK molecular chaper 99.3 4.6E-10 1E-14 124.0 22.7 211 187-441 135-374 (627)
28 PTZ00186 heat shock 70 kDa pre 99.3 4.5E-10 9.7E-15 124.1 22.0 210 186-440 161-400 (657)
29 TIGR02350 prok_dnaK chaperone 99.3 4.4E-10 9.6E-15 123.5 21.8 210 187-441 132-372 (595)
30 PTZ00400 DnaK-type molecular c 99.3 3.5E-10 7.6E-15 125.4 21.0 211 186-441 175-415 (663)
31 TIGR01991 HscA Fe-S protein as 99.2 6.4E-10 1.4E-14 122.1 22.0 212 186-441 130-360 (599)
32 PRK01433 hscA chaperone protei 99.2 7.7E-10 1.7E-14 121.1 21.5 203 186-441 142-356 (595)
33 PRK13411 molecular chaperone D 99.2 6.9E-10 1.5E-14 123.0 20.9 212 186-441 134-376 (653)
34 PRK13410 molecular chaperone D 99.2 1.1E-09 2.3E-14 121.5 22.4 209 187-441 137-376 (668)
35 PLN03184 chloroplast Hsp70; Pr 99.2 1.2E-09 2.7E-14 121.2 21.4 210 186-441 173-413 (673)
36 PTZ00009 heat shock 70 kDa pro 99.2 1.5E-09 3.3E-14 120.3 22.0 212 186-441 141-381 (653)
37 PRK05183 hscA chaperone protei 99.2 1.4E-09 3E-14 119.8 19.6 209 186-441 150-376 (616)
38 TIGR01174 ftsA cell division p 99.0 2.2E-09 4.8E-14 111.3 13.7 173 210-409 159-340 (371)
39 PRK09472 ftsA cell division pr 99.0 4.2E-09 9.2E-14 111.0 13.7 189 221-440 178-387 (420)
40 PF00012 HSP70: Hsp70 protein; 98.9 1.5E-08 3.2E-13 111.5 14.7 211 187-440 137-375 (602)
41 PRK11678 putative chaperone; P 98.8 3.6E-07 7.9E-12 96.9 20.8 93 186-285 150-260 (450)
42 COG0849 ftsA Cell division ATP 98.8 4.9E-08 1.1E-12 101.7 13.6 195 212-441 168-380 (418)
43 PF12937 F-box-like: F-box-lik 98.8 4.1E-09 9E-14 76.1 3.4 47 38-84 1-47 (47)
44 TIGR03739 PRTRC_D PRTRC system 98.5 1.7E-06 3.6E-11 88.1 15.3 82 221-303 137-229 (320)
45 COG0443 DnaK Molecular chapero 98.4 1.2E-05 2.7E-10 87.9 19.6 214 186-441 121-357 (579)
46 TIGR01175 pilM type IV pilus a 98.4 2.9E-06 6.2E-11 87.1 14.0 153 209-408 143-307 (348)
47 PF00646 F-box: F-box domain; 98.4 1.7E-07 3.6E-12 67.7 3.1 46 38-83 3-48 (48)
48 smart00256 FBOX A Receptor for 98.3 4.1E-07 8.8E-12 63.0 2.2 40 41-80 1-40 (41)
49 PRK13917 plasmid segregation p 98.3 5.1E-06 1.1E-10 85.4 10.7 169 222-440 152-335 (344)
50 PF11104 PilM_2: Type IV pilus 98.1 1.3E-05 2.9E-10 82.1 10.1 154 208-408 135-299 (340)
51 COG4820 EutJ Ethanolamine util 98.0 1.1E-05 2.5E-10 74.8 6.7 149 221-434 119-267 (277)
52 PF06406 StbA: StbA protein; 97.9 5.4E-05 1.2E-09 77.0 9.9 121 171-292 81-214 (318)
53 TIGR03286 methan_mark_15 putat 97.7 0.00013 2.8E-09 75.5 9.1 288 74-440 91-402 (404)
54 TIGR03192 benz_CoA_bzdQ benzoy 97.6 0.0019 4.1E-08 64.5 15.2 66 360-440 221-287 (293)
55 TIGR00241 CoA_E_activ CoA-subs 97.5 0.0058 1.3E-07 59.8 16.6 156 243-438 92-248 (248)
56 KOG0104 Molecular chaperones G 97.4 0.004 8.8E-08 68.0 15.0 94 187-290 160-275 (902)
57 COG4972 PilM Tfp pilus assembl 97.1 0.0031 6.7E-08 63.2 9.8 117 244-408 195-312 (354)
58 KOG0101 Molecular chaperones H 97.1 0.01 2.3E-07 64.5 14.4 211 187-441 145-383 (620)
59 PRK10719 eutA reactivating fac 96.9 0.0043 9.4E-08 65.3 9.0 155 126-295 7-207 (475)
60 TIGR02261 benz_CoA_red_D benzo 96.7 0.082 1.8E-06 52.2 15.8 50 385-439 213-262 (262)
61 COG1924 Activator of 2-hydroxy 96.5 0.07 1.5E-06 54.6 14.7 44 387-440 346-389 (396)
62 PF06277 EutA: Ethanolamine ut 96.1 0.022 4.7E-07 60.2 8.4 160 126-295 4-204 (473)
63 KOG2997 F-box protein FBX9 [Ge 96.0 0.0046 9.9E-08 61.5 2.8 49 36-84 105-158 (366)
64 TIGR03706 exo_poly_only exopol 95.7 0.082 1.8E-06 53.3 10.4 41 242-285 125-165 (300)
65 KOG0100 Molecular chaperones G 95.4 0.17 3.7E-06 52.1 11.6 90 187-288 174-273 (663)
66 PRK11031 guanosine pentaphosph 94.9 0.23 5E-06 53.7 11.4 39 242-283 132-170 (496)
67 TIGR03123 one_C_unchar_1 proba 94.5 0.3 6.5E-06 49.6 10.5 125 130-267 3-153 (318)
68 TIGR00744 ROK_glcA_fam ROK fam 94.2 6.9 0.00015 39.3 21.3 45 221-267 97-148 (318)
69 KOG0103 Molecular chaperones H 93.6 0.74 1.6E-05 50.6 11.8 93 186-290 138-246 (727)
70 PRK10854 exopolyphosphatase; P 93.4 0.6 1.3E-05 50.7 11.0 39 242-283 137-175 (513)
71 PF01869 BcrAD_BadFG: BadF/Bad 92.5 0.53 1.1E-05 46.5 8.3 66 361-439 206-271 (271)
72 COG1548 Predicted transcriptio 92.5 0.55 1.2E-05 45.8 7.9 123 126-264 4-152 (330)
73 PLN03215 ascorbic acid mannose 92.1 0.1 2.2E-06 54.0 2.7 39 36-74 2-41 (373)
74 KOG0102 Molecular chaperones m 92.1 0.95 2.1E-05 48.5 9.8 94 187-290 162-262 (640)
75 COG0248 GppA Exopolyphosphatas 91.7 1.1 2.5E-05 48.2 10.2 61 221-285 101-169 (492)
76 TIGR02259 benz_CoA_red_A benzo 91.7 0.3 6.5E-06 50.8 5.5 53 382-439 380-432 (432)
77 PF14450 FtsA: Cell division p 88.8 1.9 4.1E-05 37.2 7.4 59 245-312 2-71 (120)
78 PF02541 Ppx-GppA: Ppx/GppA ph 87.3 1.7 3.7E-05 43.3 7.0 43 240-285 110-152 (285)
79 PRK13317 pantothenate kinase; 86.2 1.1 2.3E-05 44.8 4.8 73 359-440 200-273 (277)
80 KOG2120 SCF ubiquitin ligase, 86.1 0.47 1E-05 47.5 2.2 45 36-80 96-140 (419)
81 PRK13321 pantothenate kinase; 85.1 8.7 0.00019 37.7 10.7 18 128-145 3-20 (256)
82 TIGR02707 butyr_kinase butyrat 84.8 52 0.0011 34.0 17.4 33 386-424 296-328 (351)
83 PF08841 DDR: Diol dehydratase 82.7 8.7 0.00019 38.3 9.2 79 221-307 108-191 (332)
84 KOG3926 F-box proteins [Amino 82.0 1.8 4E-05 42.5 4.2 48 37-84 201-249 (332)
85 PF01968 Hydantoinase_A: Hydan 81.8 1.5 3.3E-05 44.0 3.8 32 235-266 69-101 (290)
86 PRK03011 butyrate kinase; Prov 81.6 70 0.0015 33.2 21.4 45 386-436 298-342 (358)
87 PF07318 DUF1464: Protein of u 80.0 21 0.00045 36.7 11.2 50 387-440 264-314 (343)
88 PF06881 Elongin_A: RNA polyme 79.1 3.1 6.8E-05 35.3 4.3 50 37-88 3-52 (109)
89 KOG0281 Beta-TrCP (transducin 79.0 2 4.4E-05 43.6 3.5 49 37-85 74-126 (499)
90 KOG0274 Cdc4 and related F-box 76.4 1 2.2E-05 49.2 0.7 45 37-81 107-151 (537)
91 PRK13324 pantothenate kinase; 74.8 67 0.0015 31.7 13.0 18 127-144 2-19 (258)
92 PF03309 Pan_kinase: Type III 73.6 37 0.00079 32.1 10.5 18 128-145 2-19 (206)
93 PRK13318 pantothenate kinase; 73.4 56 0.0012 32.0 12.2 17 128-144 3-19 (258)
94 COG2441 Predicted butyrate kin 72.3 11 0.00023 37.6 6.4 158 242-441 163-332 (374)
95 PF13013 F-box-like_2: F-box-l 70.9 6.2 0.00013 33.7 4.0 39 33-72 18-58 (109)
96 TIGR00671 baf pantothenate kin 68.5 42 0.0009 32.8 9.9 18 128-145 2-19 (243)
97 COG4819 EutA Ethanolamine util 65.2 25 0.00054 35.9 7.5 142 126-280 6-180 (473)
98 TIGR01319 glmL_fam conserved h 61.8 19 0.0004 38.5 6.3 81 185-265 174-272 (463)
99 COG1521 Pantothenate kinase ty 57.9 91 0.002 30.7 9.9 18 128-145 3-20 (251)
100 KOG0681 Actin-related protein 57.4 31 0.00067 37.4 6.9 99 48-147 67-190 (645)
101 PRK13320 pantothenate kinase; 56.9 1.2E+02 0.0027 29.5 10.8 19 127-145 4-22 (244)
102 KOG2708 Predicted metalloprote 56.8 69 0.0015 31.1 8.5 52 240-293 122-173 (336)
103 PF13941 MutL: MutL protein 55.8 24 0.00051 37.8 5.9 83 185-267 178-273 (457)
104 PRK09557 fructokinase; Reviewe 51.7 33 0.00073 34.2 6.1 68 361-439 232-299 (301)
105 PRK13310 N-acetyl-D-glucosamin 50.4 37 0.00081 33.8 6.2 68 361-439 233-300 (303)
106 PF08735 DUF1786: Putative pyr 50.1 49 0.0011 32.6 6.6 44 221-265 140-190 (254)
107 PRK13326 pantothenate kinase; 47.4 2E+02 0.0043 28.4 10.6 19 127-145 8-26 (262)
108 PRK09698 D-allose kinase; Prov 44.8 58 0.0013 32.4 6.6 70 361-440 224-295 (302)
109 PRK05082 N-acetylmannosamine k 42.1 60 0.0013 32.1 6.1 66 361-439 221-286 (291)
110 PF02782 FGGY_C: FGGY family o 37.2 29 0.00062 32.0 2.8 46 384-440 150-195 (198)
111 PF09372 PRANC: PRANC domain; 36.9 30 0.00065 28.5 2.5 26 36-61 70-95 (97)
112 PRK12408 glucokinase; Provisio 36.2 1.9E+02 0.0041 29.5 8.8 42 221-263 108-166 (336)
113 PF03702 UPF0075: Uncharacteri 32.8 31 0.00068 35.8 2.4 25 385-409 286-310 (364)
114 KOG1794 N-Acetylglucosamine ki 31.4 2.9E+02 0.0062 28.0 8.6 94 165-265 46-143 (336)
115 TIGR00555 panK_eukar pantothen 31.1 50 0.0011 33.0 3.5 70 359-437 208-278 (279)
116 COG0145 HyuA N-methylhydantoin 29.6 73 0.0016 36.0 4.8 45 222-266 252-302 (674)
117 cd08817 CARD_RIG-I_2 Caspase a 24.3 48 0.001 27.0 1.6 54 40-93 19-72 (88)
118 PTZ00340 O-sialoglycoprotein e 24.1 89 0.0019 32.3 3.9 49 385-440 265-319 (345)
119 PRK13322 pantothenate kinase; 24.0 6.7E+02 0.015 24.3 11.4 17 128-144 3-19 (246)
120 KOG4341 F-box protein containi 23.4 48 0.001 35.1 1.8 43 39-81 73-115 (483)
121 KOG4408 Putative Mg2+ and Co2+ 23.2 14 0.00031 37.6 -2.0 50 37-86 7-56 (386)
122 PRK09585 anmK anhydro-N-acetyl 21.7 95 0.0021 32.3 3.6 24 385-408 288-311 (365)
123 PF03727 Hexokinase_2: Hexokin 21.4 1E+02 0.0022 29.9 3.7 43 395-441 198-240 (243)
124 PRK13331 pantothenate kinase; 20.3 8.3E+02 0.018 24.0 11.2 21 125-145 7-27 (251)
No 1
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.4e-71 Score=575.35 Aligned_cols=328 Identities=24% Similarity=0.525 Sum_probs=296.4
Q ss_pred CCcccccccCCCCCCceEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccCh
Q 011817 111 GLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESP 163 (477)
Q Consensus 111 ~~~~~~~~~~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~P 163 (477)
+.+||+++.. .+||||+||+++|+||||++.|+.++|++++ +|+ +.+|
T Consensus 3 ~~~~~~~~~~-----~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~P 77 (380)
T PTZ00466 3 NEYAKQLYSN-----QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYP 77 (380)
T ss_pred CchHHHhccC-----CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCcc
Confidence 4577888754 5899999999999999999999999998653 232 3467
Q ss_pred H-------HHHHHHHHHHHhhhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHH
Q 011817 164 M-------YSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLA 235 (477)
Q Consensus 164 i-------~~~l~~~~~~i~~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vla 235 (477)
+ |+.++.+|+++|+.|+++|+++||+++|+++++ +..|+ .+.|+||| |++|+++++++++|+
T Consensus 78 i~~G~v~dwd~~e~iw~~~f~~l~v~~~~~pvllte~~~~~------~~~re----~~~e~lFE~~~~p~~~~~~~~~ls 147 (380)
T PTZ00466 78 INHGIIENWNDMENIWIHVYNSMKINSEEHPVLLTEAPLNP------QKNKE----KIAEVFFETFNVPALFISIQAILS 147 (380)
T ss_pred ccCCeECCHHHHHHHHHHHHhhcccCCccCeEEEecCcccc------HHHHH----HHHHHHhccCCCCeEEEecchHHH
Confidence 7 789999999999999999999999999998874 55554 46777787 999999999999999
Q ss_pred HHhcCCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccc
Q 011817 236 LYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVA 312 (477)
Q Consensus 236 lya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~ 312 (477)
+|++|++||+|||+|++.|+|+||+||+++.+ ++.++++||+++|++|+++|++++..+. ..++++++||++|||+
T Consensus 148 l~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~ 226 (380)
T PTZ00466 148 LYSCGKTNGTVLDCGDGVCHCVSIYEGYSITN-TITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVS 226 (380)
T ss_pred HHhcCCceEEEEeCCCCceEEEEEECCEEeec-ceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEec
Confidence 99999999999999999999999999999998 8999999999999999999998886654 3578999999999999
Q ss_pred cchhHhhhcc----cccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeE
Q 011817 313 ADYKAELSKD----TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVI 388 (477)
Q Consensus 313 ~d~~~e~~~~----~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIv 388 (477)
.|+.+++.+. ....|+||||..+.++.|||.+||+||+|+++|.+..||+++|.++|.+||. |+ |+.|++|||
T Consensus 227 ~d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~-d~--r~~L~~nIv 303 (380)
T PTZ00466 227 FNMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADM-DL--RRTLYSHIV 303 (380)
T ss_pred CChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCCh-hh--HHHHhhcEE
Confidence 9987765421 2357999999999999999999999999999999999999999999999998 87 899999999
Q ss_pred EecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCC
Q 011817 389 LTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 389 LtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~ 460 (477)
|+||+|++|||.+||++||++++|...+ ++|..+++|++++|+||||+|++++|+++| |||+||+|+|.
T Consensus 304 L~GG~Sl~~Gf~~RL~~EL~~l~p~~~~--v~v~~~~~r~~~aW~GgSilasl~~f~~~~-itk~eYeE~G~ 372 (380)
T PTZ00466 304 LSGGTTMFHGFGDRLLNEIRKFAPKDIT--IRISAPPERKFSTFIGGSILASLATFKKIW-ISKQEFDEYGS 372 (380)
T ss_pred EeCCccccCCHHHHHHHHHHHhCCCCce--EEEecCCCCceeEEECchhhcCccchhhhE-eEHHHHhhhCc
Confidence 9999999999999999999999997654 889999999999999999999999999999 99999999995
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.3e-71 Score=574.79 Aligned_cols=320 Identities=28% Similarity=0.576 Sum_probs=290.3
Q ss_pred CCceEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccChH-------HHHHH
Q 011817 124 VPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLR 169 (477)
Q Consensus 124 ~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi-------~~~l~ 169 (477)
+.++||||+||+++|+||||++.|+.++|+.++ +|+ +.+|+ ||.++
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 447899999999999999999999999998653 232 34676 78999
Q ss_pred HHHHHHh-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEE
Q 011817 170 HFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVV 247 (477)
Q Consensus 170 ~~~~~i~-~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVV 247 (477)
.+|+++| +.|+++|+++||+++||++++ +..|++ +.|+||| |++|++++.++++|++|++|++||+||
T Consensus 84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~------~~~Re~----l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVV 153 (375)
T PTZ00452 84 IIWHHAFYNELCMSPEDQPVFMTDAPMNS------KFNRER----MTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVV 153 (375)
T ss_pred HHHHHHHHhhcCCCcccCceeeecCCCCC------HHHHHH----HHHHHhhccCCceEEEechHHHHHHHCCCceeeee
Confidence 9999986 579999999999999998874 566655 6677777 999999999999999999999999999
Q ss_pred eecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHhccccccchhHhhhc---
Q 011817 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS---LYTVRTLKEKLCYVAADYKAELSK--- 321 (477)
Q Consensus 248 DiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~---~~~v~~iKe~~c~v~~d~~~e~~~--- 321 (477)
|+|++.|+|+||+||+++.+ ++.+.++||+++|++|.++|+.++.++.+ .+++++|||++|||+.|+++++..
T Consensus 154 DiG~~~t~v~PV~dG~~l~~-~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~ 232 (375)
T PTZ00452 154 DSGEGVTHCVPVFEGHQIPQ-AITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKE 232 (375)
T ss_pred cCCCCcceEEEEECCEEecc-ceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhc
Confidence 99999999999999999999 89999999999999999999988877653 568999999999999998776542
Q ss_pred --ccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccch
Q 011817 322 --DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (477)
Q Consensus 322 --~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~ 399 (477)
.....|+||||+.+.++.|||.+||+||+|+++|.+..||+++|.++|.+||+ |+ |+.|++||||+||+|++|||
T Consensus 233 ~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~-d~--r~~L~~nIvL~GG~Sl~~Gf 309 (375)
T PTZ00452 233 SNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDL-DL--RQELCRNIVLSGGTTLFPGI 309 (375)
T ss_pred cCCcCceEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCH-hH--HHHhhccEEEecccccccCH
Confidence 12457999999999999999999999999999999999999999999999998 87 89999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCC
Q 011817 400 AERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 400 ~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~ 460 (477)
.+||++||++++|...+ ++|.++++|++++|+||||+|++++|+++| |||+||+|+|.
T Consensus 310 ~~RL~~El~~~~p~~~~--v~v~~~~~r~~~aW~GgSilasl~~f~~~~-vtk~eYeE~G~ 367 (375)
T PTZ00452 310 ANRLSNELTNLVPSQLK--IQVAAPPDRRFSAWIGGSIQCTLSTQQPQW-IKRQEYDEQGP 367 (375)
T ss_pred HHHHHHHHHHhCCCCce--eEEecCCCcceeEEECchhhcCccchhhhE-eEHHHHhccCc
Confidence 99999999999997654 899999999999999999999999999999 99999999995
No 3
>PTZ00281 actin; Provisional
Probab=100.00 E-value=4.1e-70 Score=564.43 Aligned_cols=323 Identities=30% Similarity=0.607 Sum_probs=291.2
Q ss_pred cCCCCCCceEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccChH-------
Q 011817 119 GQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM------- 164 (477)
Q Consensus 119 ~~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi------- 164 (477)
++|+. ++||||+||+++|+|||||+.|+.++|+.++ +|+ +.+|+
T Consensus 2 ~~~~~--~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d 79 (376)
T PTZ00281 2 DGEDV--QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTN 79 (376)
T ss_pred CCCcC--CeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcC
Confidence 45655 7899999999999999999999999998653 232 24566
Q ss_pred HHHHHHHHHHHh-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCc
Q 011817 165 YSRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRT 242 (477)
Q Consensus 165 ~~~l~~~~~~i~-~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~ 242 (477)
|+.++.+|+++| +.|+++|+++||+++||++++ +..| |.+.|+||| |++|++++++++++++|++|++
T Consensus 80 wd~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~------~~~r----e~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~ 149 (376)
T PTZ00281 80 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP------KANR----EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149 (376)
T ss_pred HHHHHHHHHHHHHhhccCCCccCeEEEecCCCCc------HHHH----HHHHHHHhcccCCceeEeeccHHHHHHhcCCc
Confidence 789999999876 689999999999999999874 5555 457778888 9999999999999999999999
Q ss_pred ceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchhHhh
Q 011817 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAEL 319 (477)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~ 319 (477)
||+|||+|++.|+|+||+||+++.+ +++++++||+++|++|+++|.+++..+. ..+++++|||++|||+.|++.++
T Consensus 150 tglVVDiG~~~t~v~PV~dG~~~~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~ 228 (376)
T PTZ00281 150 TGIVMDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEM 228 (376)
T ss_pred eEEEEECCCceEEEEEEEecccchh-heeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHH
Confidence 9999999999999999999999998 8999999999999999999999887763 35789999999999999887765
Q ss_pred hcc-----cccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCC
Q 011817 320 SKD-----TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (477)
Q Consensus 320 ~~~-----~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (477)
... ....|+||||+.+.++.|||.+||+||+|++.+.+..||+++|.++|.+||+ |+ |+.|++||||+||+|
T Consensus 229 ~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~-d~--r~~L~~nIvl~GG~s 305 (376)
T PTZ00281 229 QTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDV-DI--RKDLYGNVVLSGGTT 305 (376)
T ss_pred HhhhcCcccceeEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCCh-hH--HHHHHhhccccCccc
Confidence 432 2457999999999999999999999999999999999999999999999998 87 899999999999999
Q ss_pred CccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCC
Q 011817 395 CLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 395 ~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~ 460 (477)
++|||.+||++||++++|...+ ++|+.+++|++++|+||||+|++++|+++| |||+||+|+|.
T Consensus 306 ~~~Gf~~RL~~El~~~~p~~~~--v~v~~~~~r~~~aW~Ggsilasl~~f~~~~-vtk~eY~E~G~ 368 (376)
T PTZ00281 306 MFPGIADRMNKELTALAPSTMK--IKIIAPPERKYSVWIGGSILASLSTFQQMW-ISKEEYDESGP 368 (376)
T ss_pred cCcCHHHHHHHHHHHhCCCCcc--eEEecCCCCceeEEECcccccCcccHhhce-eeHHHHhhhCc
Confidence 9999999999999999998654 999999999999999999999999999999 99999999994
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=7.3e-71 Score=555.67 Aligned_cols=317 Identities=34% Similarity=0.652 Sum_probs=288.7
Q ss_pred ceEEEeCCcceEEEEEecCCCCCccccccccc-----------------CC-------ccChH-------HHHHHHHHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-----------------GN-------IESPM-------YSRLRHFFAT 174 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~-----------------G~-------~~~Pi-------~~~l~~~~~~ 174 (477)
.+||||+||++||+|||||+.|+.++|++++. |+ +.+|+ |+.|+.+|+|
T Consensus 8 ~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~~l~~Pie~Giv~~wd~me~iw~~ 87 (372)
T KOG0676|consen 8 QAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKRTLKYPIERGIVTDWDDMEKIWHH 87 (372)
T ss_pred ceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccccccCccccccccchHHHHHHHHH
Confidence 69999999999999999999999999987642 11 34677 6889999998
Q ss_pred Hh-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEEeecCc
Q 011817 175 IY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQ 252 (477)
Q Consensus 175 i~-~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVVDiG~~ 252 (477)
+| +.|+++|++|||+++||+++| +.+|++ +.|+||| ||+|++++..++++ |++|++||+|||+|++
T Consensus 88 if~~~L~~~Pee~pvllte~pl~p------~~nREk----~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~g 155 (372)
T KOG0676|consen 88 LFYSELLVAPEEHPVLLTEPPLNP------KANREK----LTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDG 155 (372)
T ss_pred HHHHhhccCcccCceEeecCCCCc------hHhHHH----HHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCC
Confidence 87 689999999999999999875 788876 5556666 99999999777777 9999999999999999
Q ss_pred eeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchhHhhhcc-----cc
Q 011817 253 VTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD-----TQ 324 (477)
Q Consensus 253 ~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~-----~~ 324 (477)
.|+++||++|+++++ ++.++++||+++|+||+..|.+++.++. ..++++++||++||++.|+++|+... ..
T Consensus 156 vt~~vPI~eG~~lp~-ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~ 234 (372)
T KOG0676|consen 156 VTHVVPIYEGYALPH-AILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLE 234 (372)
T ss_pred ceeeeecccccccch-hhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccc
Confidence 999999999999999 8999999999999999999999887765 36899999999999999999887641 34
Q ss_pred cceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHH
Q 011817 325 ASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLE 404 (477)
Q Consensus 325 ~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~ 404 (477)
.+|++|||+.+.+++|||.+||+||+|+..|.+..||++++.++|.+|++ |+ |+.|++||||+||++++|||.+||+
T Consensus 235 ~~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~-dl--rk~L~~nivLsGGtT~~pGl~~Rl~ 311 (372)
T KOG0676|consen 235 SSYELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDI-DL--RKDLYENIVLSGGTTMFPGLADRLQ 311 (372)
T ss_pred ccccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCCh-hH--hHHHHhheEEeCCcccchhHHHHHH
Confidence 56999999999999999999999999999999999999999999999998 98 7899999999999999999999999
Q ss_pred HHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCCc
Q 011817 405 KELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSRF 461 (477)
Q Consensus 405 ~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~~ 461 (477)
+||+.+.|...+ ++|+++|++.+++|+||||+||+++|+++| |||+||+|.|.-
T Consensus 312 kEl~~l~P~~~~--ikv~~pp~r~~s~WlGgSIlaslstfq~~w-itk~eY~e~g~~ 365 (372)
T KOG0676|consen 312 KELQALAPSTIK--IKVIAPPERKYSAWLGGSILASLSTFQQMW-ITKEEYEEHGPS 365 (372)
T ss_pred HHHhhcCCCCcc--eEEecCcccccceecCceeEeecchHhhcc-ccHHHHhhhCCc
Confidence 999999998876 999999999999999999999999999999 999999999943
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=2.5e-67 Score=544.18 Aligned_cols=318 Identities=29% Similarity=0.596 Sum_probs=287.5
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccChH-------HHHHHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLRHF 171 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi-------~~~l~~~ 171 (477)
++||||+||+++|+||||++.|+.++|++++ +|+ +++|+ |+.++.+
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i 86 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKI 86 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHH
Confidence 6899999999999999999999999988652 232 34676 7899999
Q ss_pred HHHHh-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEEee
Q 011817 172 FATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNI 249 (477)
Q Consensus 172 ~~~i~-~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVVDi 249 (477)
|++++ +.|+++|.++||++++|++++ +..|+ .+.|+||| |++|++++++++++++|++|++||+|||+
T Consensus 87 ~~~~~~~~l~v~~~~~pvllte~~~~~------~~~r~----~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDi 156 (378)
T PTZ00004 87 WHHTFYNELRVAPEEHPVLLTEAPLNP------KANRE----KMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDS 156 (378)
T ss_pred HHHHHHhhcccCCccCcceeecCCCCc------HHHHH----HHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEEC
Confidence 99875 689999999999999998864 55554 46677777 99999999999999999999999999999
Q ss_pred cCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchhHhhhcc----
Q 011817 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD---- 322 (477)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~---- 322 (477)
|++.|+|+||+||+++.+ +++++++||++++++|+++|..++..+. ..+++++|||++|||+.|+++++.+.
T Consensus 157 G~~~t~v~pV~dG~~l~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (378)
T PTZ00004 157 GDGVSHTVPIYEGYSLPH-AIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSS 235 (378)
T ss_pred CCCcEEEEEEECCEEeec-ceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCc
Confidence 999999999999999998 8999999999999999999999887654 35789999999999999988776431
Q ss_pred --cccceEeCCCcEEEecceeeccccccccccccccc-cCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccch
Q 011817 323 --TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (477)
Q Consensus 323 --~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~-~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~ 399 (477)
....|+||||+.+.++.|||.+||+||+|++++.+ ..||+++|.++|.+||+ |+ |+.|++||||+||+|++|||
T Consensus 236 ~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~-d~--r~~L~~nIvl~GG~s~~~Gf 312 (378)
T PTZ00004 236 DKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDI-DI--RKDLYGNIVLSGGTTMYRGL 312 (378)
T ss_pred cccceEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCCh-hH--HHHHHhhEEeccchhcCcCH
Confidence 24579999999999999999999999999998888 89999999999999998 87 89999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCC
Q 011817 400 AERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 400 ~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~ 460 (477)
.+||++||++++|...+ ++|..+++|++++|+||||+|++++|+++| |||+||+|+|.
T Consensus 313 ~~RL~~EL~~~~p~~~~--~~v~~~~~~~~~aW~Ggsilas~~~f~~~~-vtk~eYeE~G~ 370 (378)
T PTZ00004 313 PERLTKELTTLAPSTMK--IKVVAPPERKYSVWIGGSILSSLPTFQQMW-VTKEEYDESGP 370 (378)
T ss_pred HHHHHHHHHHhCCCCcc--EEEecCCCCceeEEECcccccCccchhhhE-eEHHHHhhhCc
Confidence 99999999999998764 889988999999999999999999999998 99999999995
No 6
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=3.9e-67 Score=515.27 Aligned_cols=325 Identities=26% Similarity=0.504 Sum_probs=280.9
Q ss_pred ccccCCCCCCceEEEeCCcceEEEEEecCCCCCccccccccc-----CC----------------------ccChH----
Q 011817 116 HIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-----GN----------------------IESPM---- 164 (477)
Q Consensus 116 ~~~~~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~-----G~----------------------~~~Pi---- 164 (477)
.+|++|+. ++||||+||++||+||||++.|++++|++++. |+ +..|+
T Consensus 4 ~~yggdEv--~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGl 81 (426)
T KOG0679|consen 4 GVYGGDEV--SALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGL 81 (426)
T ss_pred cccccccc--ceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCC
Confidence 37999999 99999999999999999999999999998752 11 12333
Q ss_pred ---HHHHHHHHHHHhh-hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhc
Q 011817 165 ---YSRLRHFFATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA 239 (477)
Q Consensus 165 ---~~~l~~~~~~i~~-~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~ 239 (477)
||.++..|+|.|+ +|+++|.+||++++||++++ ++.|+| ++|+||| ++||+++++.+++|++||+
T Consensus 82 v~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~------~~~Rek----~~ElmFE~~nvPAf~L~k~~v~~AFA~ 151 (426)
T KOG0679|consen 82 VEDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNT------RANREK----LTELMFEKLNVPAFYLAKTAVCTAFAN 151 (426)
T ss_pred cccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCc------HHHHHH----HHHHHHhhcCCceEEEechHHHHHHhc
Confidence 7889999999996 89999999999999999874 677766 5666777 9999999999999999999
Q ss_pred CCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcH---------------------
Q 011817 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSL--------------------- 298 (477)
Q Consensus 240 G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~--------------------- 298 (477)
|+.||+|||||+..|+|+||+||+++.+ ++++.++||+.|+..++++|...++++.+.
T Consensus 152 GrstalVvDiGa~~~svsPV~DG~Vlqk-~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~ 230 (426)
T KOG0679|consen 152 GRSTALVVDIGATHTSVSPVHDGYVLQK-GVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRV 230 (426)
T ss_pred CCCceEEEEecCCCceeeeeecceEeee-eeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcC
Confidence 9999999999999999999999999999 999999999999999999999987764221
Q ss_pred ---------------HHHHHHHHhccccccc-hhHhhh-cccccceEeCCCcEEEecceeeccccccccccccc------
Q 011817 299 ---------------YTVRTLKEKLCYVAAD-YKAELS-KDTQASLEIAGEGWFTLSKERFQTGEILFQPRMAD------ 355 (477)
Q Consensus 299 ---------------~~v~~iKe~~c~v~~d-~~~e~~-~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g------ 355 (477)
.++++.|+.++-|+.. |.++.. .-.++.|++|||...+++.|||++||.||+|+...
T Consensus 231 ~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~ 310 (426)
T KOG0679|consen 231 SIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEA 310 (426)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccc
Confidence 2345556665555422 222211 12567899999999999999999999999998742
Q ss_pred ------cccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCC---C
Q 011817 356 ------VRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPP---Y 426 (477)
Q Consensus 356 ------~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~---~ 426 (477)
....|+++++..||..||. |+ |..|+.|||+|||+|+|+||.+||.+||..++|.. ++++++.. +
T Consensus 311 ~~~~~~n~~lG~~~lv~sSi~~cDv-di--R~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s---rlki~as~~t~e 384 (426)
T KOG0679|consen 311 GATSHINTMLGLPHLVYSSINMCDV-DI--RSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS---RLKIIASGHTVE 384 (426)
T ss_pred cCCCCCccccCchHHHHhhhccChH-HH--HHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc---eEEEEecCceee
Confidence 1245899999999999999 98 89999999999999999999999999999999987 49998865 7
Q ss_pred CcchhhhhhHHhhcCCCccccccccHHHHhhcCC
Q 011817 427 GADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 427 ~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~ 460 (477)
|++++|+||||||||++|+++| |+||||||.|+
T Consensus 385 R~~~~WlGGSILASLgtFqq~W-iSKqEYEE~G~ 417 (426)
T KOG0679|consen 385 RRFQSWLGGSILASLGTFQQLW-ISKQEYEEVGK 417 (426)
T ss_pred ehhhhhhhhHHHhccccHHHHh-hhHHHHHHhhh
Confidence 9999999999999999999999 99999999996
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.7e-64 Score=529.15 Aligned_cols=321 Identities=23% Similarity=0.463 Sum_probs=280.0
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccc--------------------cCC----------ccChH-------HHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE--------------------FGN----------IESPM-------YSRL 168 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~--------------------~G~----------~~~Pi-------~~~l 168 (477)
++||||+||++||+||||++.|+.++|++++ +|+ +.+|+ |+.+
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~~ 84 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDLM 84 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHHH
Confidence 5899999999999999999999999987652 132 24576 6899
Q ss_pred HHHHHHHh-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhc-------
Q 011817 169 RHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA------- 239 (477)
Q Consensus 169 ~~~~~~i~-~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~------- 239 (477)
+.+|++++ +.|+++|.++|+++++|++++ +..|++ +.|+||| |++|+++++++++|++|++
T Consensus 85 e~l~~~~~~~~L~~~p~~~~vllte~~~~~------~~~Re~----l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~ 154 (414)
T PTZ00280 85 EKFWEQCIFKYLRCEPEEHYFILTEPPMNP------PENREY----TAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK 154 (414)
T ss_pred HHHHHHHHHHhhccCCCCCceEEeeCCCCc------HHHHHH----HHHHHhhccCCCeEEEecCHHHhHhhhccccccc
Confidence 99999865 789999999999999999875 555654 6677777 9999999999999999999
Q ss_pred ---CCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHhcccccc
Q 011817 240 ---KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS---LYTVRTLKEKLCYVAA 313 (477)
Q Consensus 240 ---G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~---~~~v~~iKe~~c~v~~ 313 (477)
|++||+|||+|++.|+|+||+||+++.+ +++++++||+++|++|+++|++++..+.+ .+++++|||++||++.
T Consensus 155 ~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 233 (414)
T PTZ00280 155 ELGGTLTGTVIDSGDGVTHVIPVVDGYVIGS-SIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAP 233 (414)
T ss_pred ccCCceeEEEEECCCCceEEEEEECCEEccc-ceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999998 89999999999999999999998876643 5789999999999999
Q ss_pred chhHhhhcc------cccceEeCC---Cc--EEEecceeeccccccccccccccc-cCCHHHHHHHHHhhcCCCCccCcc
Q 011817 314 DYKAELSKD------TQASLEIAG---EG--WFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSGDD 381 (477)
Q Consensus 314 d~~~e~~~~------~~~~yelpd---~~--~i~l~~er~~~~E~LF~P~~~g~~-~~~L~~~I~~sI~~~~~~dl~~r~ 381 (477)
|+.+++... ....|++|| |+ .+.++.|||.+||+||+|++++.+ ..+|+++|.++|++||+ |+ |+
T Consensus 234 d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~-d~--r~ 310 (414)
T PTZ00280 234 DIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPI-DC--RR 310 (414)
T ss_pred cHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCCh-hh--HH
Confidence 988776531 224588887 33 789999999999999999987655 45999999999999998 87 89
Q ss_pred cccCCeEEecCCCCccchHHHHHHHHHhcCCCC--------------CCCceEEeCCCCCcchhhhhhHHhhcCCCcccc
Q 011817 382 AWFKTVILTGGSACLPGLAERLEKELRGLLPSS--------------ISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGA 447 (477)
Q Consensus 382 ~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~--------------~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~ 447 (477)
+|++||||+||+|++|||.+||++||+++++.. .+.+++|.+++++++++|+||||+|++++|+++
T Consensus 311 ~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~ 390 (414)
T PTZ00280 311 PLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKV 390 (414)
T ss_pred HHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhh
Confidence 999999999999999999999999999987431 012488888889999999999999999999999
Q ss_pred ccccHHHHhhcCCc
Q 011817 448 WCATKKQFRRKSRF 461 (477)
Q Consensus 448 w~ITk~eY~e~G~~ 461 (477)
| |||+||+|+|.-
T Consensus 391 ~-itk~eY~E~G~~ 403 (414)
T PTZ00280 391 C-HTKAEYDEYGPS 403 (414)
T ss_pred e-EEHHHHhccChH
Confidence 8 999999999953
No 8
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=2.2e-64 Score=472.99 Aligned_cols=320 Identities=26% Similarity=0.496 Sum_probs=286.5
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccc-------------------cCC----------ccChH-------HHHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------FGN----------IESPM-------YSRLR 169 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-------------------~G~----------~~~Pi-------~~~l~ 169 (477)
++||.|+|+++.|+||||++.|.+++|+.++ +|+ +.+|+ |+.|+
T Consensus 5 ~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM~ 84 (389)
T KOG0677|consen 5 NVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDME 84 (389)
T ss_pred CeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHHH
Confidence 6899999999999999999999999999764 232 56787 78999
Q ss_pred HHHHHH-hhhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEE
Q 011817 170 HFFATI-YSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVV 247 (477)
Q Consensus 170 ~~~~~i-~~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVV 247 (477)
++|+|. +++|+++|.++.++++||+++| ..+|++ ++|+||| +++.++++..|+++++|+.|..||+||
T Consensus 85 h~WDytF~ekl~idp~~~KiLLTePPmNP------~kNREK----m~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVv 154 (389)
T KOG0677|consen 85 HVWDYTFGEKLKIDPTNCKILLTEPPMNP------TKNREK----MIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVV 154 (389)
T ss_pred HHHHhhhhhhccCCCccCeEEeeCCCCCc------cccHHH----HHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEE
Confidence 999875 5899999999999999999986 566655 7778888 999999999999999999999999999
Q ss_pred eecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchhHhhhc--c
Q 011817 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSK--D 322 (477)
Q Consensus 248 DiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~--~ 322 (477)
|.|.+.|+|+||++|+++++ -.++.+++|+++|+||.++|.++|+.|+ +++++++|||++||++.|++.|.+- .
T Consensus 155 DSGDGVTHi~PVye~~~l~H-LtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalE 233 (389)
T KOG0677|consen 155 DSGDGVTHIVPVYEGFVLPH-LTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALE 233 (389)
T ss_pred ecCCCeeEEeeeecceehhh-hhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhh
Confidence 99999999999999999999 7899999999999999999999999886 4789999999999999998765322 1
Q ss_pred ---cccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccch
Q 011817 323 ---TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (477)
Q Consensus 323 ---~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~ 399 (477)
...+|+||||..|.++.|||.+||.||+|.+++.+..|+.+++.++|+..++ |+ |.+++++|||+||+++.||+
T Consensus 234 TTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDi-D~--R~~lYkhIVLSGGstMYPGL 310 (389)
T KOG0677|consen 234 TTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADI-DI--RSELYKHIVLSGGSTMYPGL 310 (389)
T ss_pred heeeeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhcc-ch--HHHHHhHeeecCCcccCCCC
Confidence 3468999999999999999999999999999999999999999999999988 77 89999999999999999999
Q ss_pred HHHHHHHHHhcCC-----CC----CCCceEEeCCCCCcchhhhhhHHhhcC-CCccccccccHHHHhhcCC
Q 011817 400 AERLEKELRGLLP-----SS----ISNGIRVIPPPYGADTAWFGAKLVGNL-STFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 400 ~eRL~~EL~~l~p-----~~----~~~~v~v~~~~~~~~~aW~Ggsilasl-~~f~~~w~ITk~eY~e~G~ 460 (477)
..||++||+++.- .+ .+-++++-.||.|++.+++||+.+|++ ..-+++| +||+||+|.|-
T Consensus 311 PSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW-~skqeyqE~G~ 380 (389)
T KOG0677|consen 311 PSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFW-MSKQEYQEEGI 380 (389)
T ss_pred cHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccce-ecHHHHHhhhH
Confidence 9999999998742 11 123577788999999999999999995 6667899 99999999993
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.1e-63 Score=519.20 Aligned_cols=322 Identities=34% Similarity=0.636 Sum_probs=271.9
Q ss_pred CCCCCCceEEEeCCcceEEEEEecCCCCCcccccccc------------cCC----------ccChH-------HHHHHH
Q 011817 120 QRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE------------FGN----------IESPM-------YSRLRH 170 (477)
Q Consensus 120 ~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~------------~G~----------~~~Pi-------~~~l~~ 170 (477)
||+. ++||||+||.+||+|||||+.|+.++|++++ +|+ +.+|+ |+.++.
T Consensus 1 ~d~~--~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~ 78 (393)
T PF00022_consen 1 GDEN--KPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSPRSNLELRSPIENGVIVDWDALEE 78 (393)
T ss_dssp -TSS--SEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHTGTGEEEEESEETTEESSHHHHHH
T ss_pred CCCC--CEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccchhheeeeeecccccccccccccc
Confidence 3555 8999999999999999999999999988653 221 23444 789999
Q ss_pred HHHHHhh-hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEEe
Q 011817 171 FFATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVN 248 (477)
Q Consensus 171 ~~~~i~~-~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVVD 248 (477)
+|+++|. .|+++++++|||+++|++++ +..| +.+.|+||| |++|+++++++++|++|++|++||||||
T Consensus 79 i~~~~~~~~l~~~~~~~~vll~~~~~~~------~~~r----~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD 148 (393)
T PF00022_consen 79 IWDYIFSNLLKVDPSDHPVLLTEPPFNP------RSQR----EKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVD 148 (393)
T ss_dssp HHHHHHHTTT-SSGGGSEEEEEESTT--------HHHH----HHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEE
T ss_pred ccccccccccccccccceeeeeccccCC------chhh----hhhhhhhhcccccceeeeeecccccccccccccccccc
Confidence 9999886 58999999999999998864 4444 457777787 9999999999999999999999999999
Q ss_pred ecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCC--------------------CcHHHHHHHHHhc
Q 011817 249 IGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF--------------------GSLYTVRTLKEKL 308 (477)
Q Consensus 249 iG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~--------------------~~~~~v~~iKe~~ 308 (477)
+|++.|+|+||+||+++.+ +++++++||++++++|+++|+++++.. ....+++++|+++
T Consensus 149 ~G~~~t~v~pV~dG~~~~~-~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~ 227 (393)
T PF00022_consen 149 IGYSSTSVVPVVDGYVLPH-SIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEEC 227 (393)
T ss_dssp ESSS-EEEEEEETTEE-GG-GBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHH
T ss_pred cceeeeeeeeeeecccccc-ccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchh
Confidence 9999999999999999998 899999999999999999999974432 1246899999999
Q ss_pred cccccchhH-hh---hcccccceEeCCCcEEEecceeeccccccccccccccccC-------CHHHHHHHHHhhcCCCCc
Q 011817 309 CYVAADYKA-EL---SKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTM-------GLDQAVALCMDHCHYAEL 377 (477)
Q Consensus 309 c~v~~d~~~-e~---~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~-------~L~~~I~~sI~~~~~~dl 377 (477)
|+++.+... +. .......|++|||+.+.++.||+.+||+||+|...+.+.. ||+++|.++|++|+. |+
T Consensus 228 ~~v~~~~~~~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~-d~ 306 (393)
T PF00022_consen 228 CYVSEDPDEEQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPI-DL 306 (393)
T ss_dssp HSGGSSHHHHHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTT-TT
T ss_pred hhcccccccccccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cc
Confidence 999988763 11 1235678999999999999999999999999999887665 999999999999998 87
Q ss_pred cCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCC-CCcchhhhhhHHhhcCCCccccccccHHHHh
Q 011817 378 SGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPP-YGADTAWFGAKLVGNLSTFPGAWCATKKQFR 456 (477)
Q Consensus 378 ~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~-~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~ 456 (477)
|+.|++|||||||+|++|||.+||++||..+.|...+ ++|+.++ +|.+++|+||||+|++++|+++| |||+||+
T Consensus 307 --r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~--~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~-itr~eYe 381 (393)
T PF00022_consen 307 --RKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTK--VKVIAPPSDRQFAAWIGGSILASLSSFQSFW-ITREEYE 381 (393)
T ss_dssp --HHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTST--EEEE--T-TTTSHHHHHHHHHHTSGGGGGTS-EEHHHHH
T ss_pred --ccccccceEEecccccccchHHHHHHHhhhhhhcccc--ceeccCchhhhhcccccceeeecccccccee-eeHHHHh
Confidence 8999999999999999999999999999998887764 9999988 99999999999999999999998 9999999
Q ss_pred hcCC
Q 011817 457 RKSR 460 (477)
Q Consensus 457 e~G~ 460 (477)
|+|.
T Consensus 382 E~G~ 385 (393)
T PF00022_consen 382 EYGP 385 (393)
T ss_dssp HHGG
T ss_pred CcCc
Confidence 9994
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=4.2e-61 Score=497.03 Aligned_cols=318 Identities=31% Similarity=0.650 Sum_probs=284.3
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccc----------------cCC----------ccChH-------HHHHHHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE----------------FGN----------IESPM-------YSRLRHFF 172 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~----------------~G~----------~~~Pi-------~~~l~~~~ 172 (477)
++||||+||++||+||+|++.|++++|+++. +|+ +.+|+ |+.++.+|
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~ 81 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIW 81 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHH
Confidence 5899999999999999999999999997642 122 34676 68999999
Q ss_pred HHHhh-hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEEeec
Q 011817 173 ATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIG 250 (477)
Q Consensus 173 ~~i~~-~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVVDiG 250 (477)
+++++ .|+++|+++||++++|.+++ ...| +.+.+++|| +++|++++++++++++|++|.++|+|||+|
T Consensus 82 ~~~~~~~l~~~~~~~~vll~~p~~~~------~~~r----~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG 151 (373)
T smart00268 82 DYTFFNELRVEPEEHPVLLTEPPMNP------KSNR----EKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSG 151 (373)
T ss_pred HHHHhhhcCCCCccCeeEEecCCCCC------HHHH----HHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecC
Confidence 99987 79999999999999998764 4445 457777787 999999999999999999999999999999
Q ss_pred CceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchhHhhhcc-----
Q 011817 251 FQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD----- 322 (477)
Q Consensus 251 ~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~----- 322 (477)
++.|+|+||+||+++.+ +++++++||++++++|+++|++++..+. ..+.++++|+++||++.++++++...
T Consensus 152 ~~~t~v~pv~~G~~~~~-~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~ 230 (373)
T smart00268 152 DGVTHVVPVVDGYVLPH-AIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSE 230 (373)
T ss_pred CCcceEEEEECCEEchh-hheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhccc
Confidence 99999999999999998 8899999999999999999988554432 35789999999999999887765421
Q ss_pred ---cccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccch
Q 011817 323 ---TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (477)
Q Consensus 323 ---~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~ 399 (477)
....|++|||+.+.++.||+.+||+||+|+..+.+..+|+++|.++|++||+ |+ |+.|++|||||||+|++|||
T Consensus 231 ~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~-d~--r~~l~~nIvltGG~s~i~Gl 307 (373)
T smart00268 231 SSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDI-DV--RKDLYENIVLSGGSTLIPGF 307 (373)
T ss_pred ccccceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCH-hH--HHHHHhCeEeecccccCcCH
Confidence 2457999999999999999999999999999998889999999999999998 87 89999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCC
Q 011817 400 AERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 400 ~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~ 460 (477)
.+||++||+.++|...+ +++..++++.+++|+||||+|++++|++.| |||+||+|+|.
T Consensus 308 ~~RL~~el~~~~p~~~~--v~v~~~~~~~~~~W~G~silas~~~f~~~~-vtk~eY~E~G~ 365 (373)
T smart00268 308 GERLEKELKQLAPKKLK--VKVIAPPERKYSVWLGGSILASLSTFEDMW-ITKKEYEEHGS 365 (373)
T ss_pred HHHHHHHHHHhCCCCce--eEEecCCCCccceEeCcccccCccchhhhE-EEHHHHhhhCc
Confidence 99999999999987654 888888899999999999999999999988 99999999994
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=8.8e-59 Score=479.43 Aligned_cols=320 Identities=32% Similarity=0.610 Sum_probs=281.4
Q ss_pred eEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC-----------ccChH-------HHHHHHH
Q 011817 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN-----------IESPM-------YSRLRHF 171 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~-----------~~~Pi-------~~~l~~~ 171 (477)
+||||+||+++|+||+|++.|+.++|++++ +|+ +.+|+ |+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 599999999999999999999999987652 221 24566 6789999
Q ss_pred HHHHhh-hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEEee
Q 011817 172 FATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNI 249 (477)
Q Consensus 172 ~~~i~~-~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVVDi 249 (477)
|+++|+ .|.++++++||++++|.+++ ...| +.+.++||| +++|++++++++++++|++|.++|+|||+
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~------~~~r----~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDi 150 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNP------KSNR----EKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDS 150 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCC------HHHH----HHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEEC
Confidence 999886 57888999999999998764 4444 457778888 99999999999999999999999999999
Q ss_pred cCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCC---CcHHHHHHHHHhccccccchhHhhh------
Q 011817 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF---GSLYTVRTLKEKLCYVAADYKAELS------ 320 (477)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~---~~~~~v~~iKe~~c~v~~d~~~e~~------ 320 (477)
|++.|+|+||+||+++.+ +++++++||++++++|+++|+.++..+ .....++++|+++||++.+++++..
T Consensus 151 G~~~t~i~pv~~G~~~~~-~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~ 229 (371)
T cd00012 151 GDGVTHVVPVYDGYVLPH-AIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKET 229 (371)
T ss_pred CCCeeEEEEEECCEEchh-hheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccC
Confidence 999999999999999998 789999999999999999999888643 2457899999999999998876541
Q ss_pred cccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchH
Q 011817 321 KDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400 (477)
Q Consensus 321 ~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~ 400 (477)
......|++||++.+.++.|||.+||+||+|+..+....+|+++|.++|++|+. |+ |+.+++||+||||+|++|||.
T Consensus 230 ~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~-~~--~~~l~~~Ivl~GG~s~~~gl~ 306 (371)
T cd00012 230 SLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDI-DL--RKDLYSNIVLSGGSTLFPGFG 306 (371)
T ss_pred CccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCH-hH--HHHHHhCEEEeCCccCCcCHH
Confidence 123457999999999999999999999999999888889999999999999998 77 789999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCCc
Q 011817 401 ERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSRF 461 (477)
Q Consensus 401 eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~~ 461 (477)
+||++||..++|..-...+++...++|.+++|+||||+|++++|+++| |||+||+|+|.-
T Consensus 307 ~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~-itk~eY~E~G~~ 366 (371)
T cd00012 307 ERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLW-ITKEEYEEHGPS 366 (371)
T ss_pred HHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheE-eeHHHHhhhCch
Confidence 999999999988731223777778889999999999999999999988 999999999953
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-55 Score=460.13 Aligned_cols=318 Identities=31% Similarity=0.615 Sum_probs=278.1
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccc------------------cCC------------ccChH-------HHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE------------------FGN------------IESPM-------YSRL 168 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~------------------~G~------------~~~Pi-------~~~l 168 (477)
++||||+||++||+||+|++.|+.++|+.++ +|+ +++|+ |+.+
T Consensus 7 ~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~~ 86 (444)
T COG5277 7 PTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAM 86 (444)
T ss_pred CeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHHH
Confidence 5599999999999999999999999987543 111 23444 7899
Q ss_pred HHHHHHHhh---hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCc--
Q 011817 169 RHFFATIYS---RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRT-- 242 (477)
Q Consensus 169 ~~~~~~i~~---~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~-- 242 (477)
+.+|++.|. .+...+.+||++++||+.++ ...|+ .+.|++|| ++||++++..+++|++|+.|..
T Consensus 87 e~~w~~~~~~~~~~~~~~~~~pllltep~~n~------~~~re----~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~ 156 (444)
T COG5277 87 EQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNP------PSNRE----KITELLFETLNVPALYLAIQAVLSLYASGSSDE 156 (444)
T ss_pred HHHHHHhhcchhhccCCCcCCceEEeccCCCc------HHHHH----HHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCC
Confidence 999998774 47788999999999999875 55554 46677777 9999999999999999999999
Q ss_pred ceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHh-----cCCCCCc------HHHHHHHHHhcc--
Q 011817 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS------LYTVRTLKEKLC-- 309 (477)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~-----~~~~~~~------~~~v~~iKe~~c-- 309 (477)
+|+|||+|++.|+|+||+||.++.+ +++++++||+++|.+|.++|.. ++..+.+ .++++.+|+++|
T Consensus 157 ~g~ViD~G~~~t~v~PV~DG~~l~~-a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~ 235 (444)
T COG5277 157 TGLVIDSGDSVTHVIPVVDGIVLPK-AVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCET 235 (444)
T ss_pred ceEEEEcCCCceeeEeeeccccccc-cceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccc
Confidence 9999999999999999999999999 8999999999999999999998 5555443 679999999999
Q ss_pred -----ccccchhHhhhc---------------------ccccceEeCCCcEEEecce-eecccccccccc--ccccccCC
Q 011817 310 -----YVAADYKAELSK---------------------DTQASLEIAGEGWFTLSKE-RFQTGEILFQPR--MADVRTMG 360 (477)
Q Consensus 310 -----~v~~d~~~e~~~---------------------~~~~~yelpd~~~i~l~~e-r~~~~E~LF~P~--~~g~~~~~ 360 (477)
|+..+.+++... .....+++||+..+.++.| ||++||.||.|. ..+.+..+
T Consensus 236 ~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~ 315 (444)
T COG5277 236 DDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAG 315 (444)
T ss_pred cccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccc
Confidence 888765443211 0124678899999999999 999999999999 76665555
Q ss_pred ---------------------------HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCC
Q 011817 361 ---------------------------LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPS 413 (477)
Q Consensus 361 ---------------------------L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~ 413 (477)
|++++.++|..|+. |+ |+.|++|||||||+|++|||.+||++||+.+.|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~-~~--r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~ 392 (444)
T COG5277 316 KIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDE-DV--RKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPS 392 (444)
T ss_pred cchhhhhhhhhhccccccccccccccchHHHHHHHHHhccH-HH--HHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCC
Confidence 99999999999997 77 8999999999999999999999999999999998
Q ss_pred CCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCC
Q 011817 414 SISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 414 ~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~ 460 (477)
... ++|..+++|.+.+|+||||+|++++|+++| |||+||+|.|.
T Consensus 393 ~~~--v~v~~~~~~~~~~W~GaSila~~~~~~~~~-itk~eY~e~G~ 436 (444)
T COG5277 393 IWK--VSVIPPPDPSLDAWLGASILASLETFQQLW-ITKEEYEEHGP 436 (444)
T ss_pred CCc--eeeecCCchhhccccchhhhccccchhheE-eeHHHhhhhhh
Confidence 654 999999999999999999999999999999 99999999995
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=4.5e-54 Score=413.90 Aligned_cols=318 Identities=22% Similarity=0.423 Sum_probs=272.7
Q ss_pred CceEEEeCCcceEEEEEecCCCCCccccccc---------ccCC------------ccChH-------HHHHHHHHHHHh
Q 011817 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFL---------EFGN------------IESPM-------YSRLRHFFATIY 176 (477)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~---------~~G~------------~~~Pi-------~~~l~~~~~~i~ 176 (477)
+++||+|+|++++|+|+++++.|..+..... ..|| ++.|. |+....+|+++|
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~~vpNcl~kaK~~~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWDy~f 82 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPFVVPNCLAKAKFGRRRSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVWDYCF 82 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCceeccchhhhcccccchhhhhhhhhhccCccceEEeehhhcceeEeehhHHHHHHHHh
Confidence 4799999999999999999998876544321 1222 23454 577888999998
Q ss_pred hhcc--cCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhc---C--------Cc
Q 011817 177 SRMQ--VKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA---K--------RT 242 (477)
Q Consensus 177 ~~L~--v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~---G--------~~ 242 (477)
...+ ++-+++.+++++|.++- | .+-+...|++|| |++.+++=...+.++++-. + ..
T Consensus 83 ~~~~~~~~~~~~~ivlTep~~~~-----p-----si~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~ 152 (400)
T KOG0680|consen 83 GNPGFDVEGKDHNIVLTEPCMTF-----P-----SIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSE 152 (400)
T ss_pred cCCCcCcccCcceEEEecccccc-----c-----chhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccc
Confidence 6544 67789999999998863 1 234567788887 9999999999888888762 1 12
Q ss_pred ceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHhccccccchhHhhhc
Q 011817 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG-SLYTVRTLKEKLCYVAADYKAELSK 321 (477)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~-~~~~v~~iKe~~c~v~~d~~~e~~~ 321 (477)
.++|||.|++.|+|+|+++|.+..+ +++++++||+.||++|++.+..+++++. ..+++++|||.+|||+.||.+.+..
T Consensus 153 c~lVIDsGysfThIip~v~g~~~~q-aV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 153 CCLVIDSGYSFTHIIPVVKGIPYYQ-AVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred eEEEEeCCCceEEEehhhcCcchhh-ceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHH
Confidence 6899999999999999999999998 8999999999999999999999888764 4689999999999999998876532
Q ss_pred c--------cccceEeCC-------------------CcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCC
Q 011817 322 D--------TQASLEIAG-------------------EGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHY 374 (477)
Q Consensus 322 ~--------~~~~yelpd-------------------~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~ 374 (477)
. ....|.||| .+.+.++.|||.+||+||+|+++|++++||+++|.+||..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 1 123455554 4578899999999999999999999999999999999999997
Q ss_pred CCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHH
Q 011817 375 AELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQ 454 (477)
Q Consensus 375 ~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~e 454 (477)
++ |..|+.|||++||++++|||.+||..||+.++|.++. ++|..+.++..-+|-||+-++.+.+|..+| |||+|
T Consensus 312 -~~--~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~--v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~-itR~d 385 (400)
T KOG0680|consen 312 -EV--RPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWE--VSVSVPEDPITFAWEGGSEFAKTDSFEKAV-ITRED 385 (400)
T ss_pred -HH--HHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccce--EEEecCCCcceeeehhccccccCcchhcce-ecHhh
Confidence 66 8899999999999999999999999999999999986 999999999999999999999999999999 99999
Q ss_pred HhhcC
Q 011817 455 FRRKS 459 (477)
Q Consensus 455 Y~e~G 459 (477)
|+|+|
T Consensus 386 y~E~G 390 (400)
T KOG0680|consen 386 YEEHG 390 (400)
T ss_pred HhhcC
Confidence 99999
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=2e-45 Score=374.05 Aligned_cols=328 Identities=26% Similarity=0.435 Sum_probs=263.2
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccc-------------cCC-----------ccChH-------HHHHHHHHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------FGN-----------IESPM-------YSRLRHFFAT 174 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-------------~G~-----------~~~Pi-------~~~l~~~~~~ 174 (477)
.|||||+||+.|||||+|+..|+.+|+.++. +|| .++|+ |+.+|++++|
T Consensus 24 ~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilDY 103 (645)
T KOG0681|consen 24 IPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILDY 103 (645)
T ss_pred CcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhhhhhhhhccCCCCCcCCccccHHHHHHHHHH
Confidence 6899999999999999999999999987542 343 34555 7899999999
Q ss_pred HhhhcccCC--CCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHh-cC---CcceEEEe
Q 011817 175 IYSRMQVKP--STQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYA-AK---RTSGIVVN 248 (477)
Q Consensus 175 i~~~L~v~p--~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya-~G---~~tglVVD 248 (477)
+|.+||+++ -+||+++||+.++| ..+|+++.|+|||+ +|+|+|.+.-+++.++|. .+ ..+|+||+
T Consensus 104 ~F~~LG~~~~~idhPIilTE~laNP------~~~R~~m~elLFE~---YgvP~V~yGIDslfS~~hN~~~~~~~~~liis 174 (645)
T KOG0681|consen 104 IFGKLGVDGQGIDHPIILTEALANP------VYSRSEMVELLFET---YGVPKVAYGIDSLFSFYHNYGKSSNKSGLIIS 174 (645)
T ss_pred HHHhcCCCccCCCCCeeeehhccCh------HHHHHHHHHHHHHH---cCCcceeechhhHHHHhhccCcccCcceEEEe
Confidence 999999998 48999999999975 67787755544444 999999999999999994 33 34799999
Q ss_pred ecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchhHhhhc----
Q 011817 249 IGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSK---- 321 (477)
Q Consensus 249 iG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~---- 321 (477)
+|++.|+|+||.||..+.. .++++++||.+...||.+||+.+.+.+. +...++.++..+||++.||.+|+.+
T Consensus 175 ~g~~~T~vipvldG~~il~-~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~ 253 (645)
T KOG0681|consen 175 MGHSATHVIPVLDGRLILK-DVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEM 253 (645)
T ss_pred cCCCcceeEEEecCchhhh-cceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhh
Confidence 9999999999999998887 7999999999999999999998755431 2334444444455444443111000
Q ss_pred ------------------------------------------------cc-------------------cc---------
Q 011817 322 ------------------------------------------------DT-------------------QA--------- 325 (477)
Q Consensus 322 ------------------------------------------------~~-------------------~~--------- 325 (477)
.. +.
T Consensus 254 d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~ 333 (645)
T KOG0681|consen 254 DYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKF 333 (645)
T ss_pred hhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhc
Confidence 00 00
Q ss_pred ------------------------------------------------------c-------------------------
Q 011817 326 ------------------------------------------------------S------------------------- 326 (477)
Q Consensus 326 ------------------------------------------------------~------------------------- 326 (477)
+
T Consensus 334 ~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e 413 (645)
T KOG0681|consen 334 PLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQE 413 (645)
T ss_pred hhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0
Q ss_pred --------------------e----------EeCC---------------------------------------------
Q 011817 327 --------------------L----------EIAG--------------------------------------------- 331 (477)
Q Consensus 327 --------------------y----------elpd--------------------------------------------- 331 (477)
+ .-||
T Consensus 414 ~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~ 493 (645)
T KOG0681|consen 414 LKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVE 493 (645)
T ss_pred hhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccc
Confidence 0 0000
Q ss_pred C----------------cEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCC
Q 011817 332 E----------------GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (477)
Q Consensus 332 ~----------------~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (477)
+ ..+.++-||+++||++|+|+++|.++.||.+++..++++.|. |. +..|.+||+||||+|+
T Consensus 494 ~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~-~e--q~~lV~nVllTGG~s~ 570 (645)
T KOG0681|consen 494 GTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPH-DE--QEKLVSNVLLTGGCSQ 570 (645)
T ss_pred cccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCch-hh--hHhhhhheEeeccccc
Confidence 0 012367889999999999999999999999999999999997 64 5678999999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcC--CcceecccCC
Q 011817 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKS--RFNIMWRSSL 469 (477)
Q Consensus 396 ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G--~~~~~~~~~~ 469 (477)
+||+++||.+||..+.|...+ |.|+.+.+|...||.||+.+|.-.+|..-| +||+||+|.| +++.|-.+|+
T Consensus 571 ~pGmkeRi~kElt~mrP~gS~--i~V~rasdP~LDAW~GA~~~a~n~~f~~~~-~Tr~dy~E~G~e~~kEh~~~n~ 643 (645)
T KOG0681|consen 571 LPGMKERIKKELTSMRPVGSS--INVVRASDPVLDAWRGASAWAANPTFTLTQ-ITRKDYEEKGEEYLKEHVASNI 643 (645)
T ss_pred CcCHHHHHHHHhheecccCCc--eEEEecCCcchhhhhhhHHhhcCcccchhh-hhHHhhhhhhHHHHHHHhhccc
Confidence 999999999999999988765 999999999999999999999999999999 9999999999 6666654443
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2.9e-44 Score=346.58 Aligned_cols=323 Identities=25% Similarity=0.493 Sum_probs=265.1
Q ss_pred ceEEEeCCcceEEEEEecCCCCCccccccccc-------------------------CC---------ccChH-------
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-------------------------GN---------IESPM------- 164 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~-------------------------G~---------~~~Pi------- 164 (477)
.++|+|+|++++|.||+|...|++++|+++.. |+ +.+|+
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~~~~ysl~ypiRhg~ve~ 84 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALDATTYSLKYPIRHGQVED 84 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHhhcccccccceecccccc
Confidence 34999999999999999999999999886532 21 34565
Q ss_pred HHHHHHHHH-HHhhhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcC--
Q 011817 165 YSRLRHFFA-TIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAK-- 240 (477)
Q Consensus 165 ~~~l~~~~~-~i~~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G-- 240 (477)
|+.|+.+|+ .+|++|...|++|-.+|+||++++ .++|+. +.|+||| ||||.+++..++++||-++-
T Consensus 85 wd~mer~~~q~ifkylr~ePedh~fLlteppln~------penrey----taeImfEsfnvpglyiAVqavLALaaswts 154 (415)
T KOG0678|consen 85 WDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQ------PENREY----TAEIMFESFNVPGLYIAVQAVLALAASWTS 154 (415)
T ss_pred HHHHHHHHhhhhhhhhcCCcccceEEecCCCCCC------chhhHH----HHHhhhhhccCchHHHHHHHHHHHHHHHHH
Confidence 689999997 567999999999999999999875 566765 4556666 99999999999999988763
Q ss_pred ------CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhcccc
Q 011817 241 ------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYV 311 (477)
Q Consensus 241 ------~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v 311 (477)
.-||+|||.|.+.|+|+||.+|+++-. +++.++++|+++|.+++.+|+.++...+ +.+.++.+||++||+
T Consensus 155 ~~v~er~ltG~VidsGdgvThvipvaEgyVigS-cik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~ 233 (415)
T KOG0678|consen 155 RQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGS-CIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYT 233 (415)
T ss_pred hhhhhheeeeEEEecCCCeeEEEEeecceEEee-eeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhccc
Confidence 368999999999999999999999987 7999999999999999999998876543 568899999999999
Q ss_pred ccchhHhhhcccc---------cceEeCCC--cEEEecceeeccccccccccccccc-cCCHHHHHHHHHhhcCCCCccC
Q 011817 312 AADYKAELSKDTQ---------ASLEIAGE--GWFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSG 379 (477)
Q Consensus 312 ~~d~~~e~~~~~~---------~~yelpd~--~~i~l~~er~~~~E~LF~P~~~g~~-~~~L~~~I~~sI~~~~~~dl~~ 379 (477)
.+|+.+|..+... ....+-.+ ..++++.|||..||++|+|.....+ ...|++.+...|++|++ |.
T Consensus 234 cPdivkef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pI-dv-- 310 (415)
T KOG0678|consen 234 CPDIVKEFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPI-DV-- 310 (415)
T ss_pred CcHHHHHHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCc-cc--
Confidence 9998777554311 11121222 3467789999999999999986544 45799999999999999 87
Q ss_pred cccccCCeEEecCCCCccchHHHHHHHHHhcCCCC---------CC---CceEEeCCCCCcchhhhhhHHhhcCCCcccc
Q 011817 380 DDAWFKTVILTGGSACLPGLAERLEKELRGLLPSS---------IS---NGIRVIPPPYGADTAWFGAKLVGNLSTFPGA 447 (477)
Q Consensus 380 r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~---------~~---~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~ 447 (477)
|+.||+||++.||.+++.+|..|++.+++.+.... .+ ..|+++...-.++++|.|||+||+.+.|...
T Consensus 311 rr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~ 390 (415)
T KOG0678|consen 311 RRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPA 390 (415)
T ss_pred chhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccc
Confidence 88999999999999999999999999998764221 11 1355666656689999999999999999976
Q ss_pred ccccHHHHhhcC-Ccce
Q 011817 448 WCATKKQFRRKS-RFNI 463 (477)
Q Consensus 448 w~ITk~eY~e~G-~~~~ 463 (477)
|=||++|||+| ++++
T Consensus 391 -~~tk~~yee~g~si~r 406 (415)
T KOG0678|consen 391 -CHTKEDYEEYGPSICR 406 (415)
T ss_pred -cCcchhhhhhChhhhh
Confidence 69999999999 4443
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=99.97 E-value=1.8e-30 Score=263.33 Aligned_cols=279 Identities=22% Similarity=0.345 Sum_probs=208.1
Q ss_pred HHHHHHHHHh-hhcccCCC---CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCCc
Q 011817 167 RLRHFFATIY-SRMQVKPS---TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT 242 (477)
Q Consensus 167 ~l~~~~~~i~-~~L~v~p~---~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~~ 242 (477)
.+..+|+|.+ ++|++.++ ++.+|++.|.. ..|..+.|.+.-+|+|+++.++.++.++++++||+|.+
T Consensus 205 dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~---------f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 205 DLTAILDYALLEKLHIPHKKLFQYHAVLVVPDT---------FDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred HHHHHHHHHHHHhcCCChhHhcceeEEEEecch---------hhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 4667788765 57998764 67888888853 45677777777777889999999999999999999999
Q ss_pred ceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHhccccccc
Q 011817 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG--------SLYTVRTLKEKLCYVAAD 314 (477)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~--------~~~~v~~iKe~~c~v~~d 314 (477)
++||||||++.|+|+||-||.++++ +...+++||.+|++.|..+|++.+..+. .+..++++||++|....+
T Consensus 276 s~CVVdiGAQkTsIaCVEdGvs~~n-tri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~a 354 (618)
T KOG0797|consen 276 SACVVDIGAQKTSIACVEDGVSLPN-TRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRAA 354 (618)
T ss_pred ceeEEEccCcceeEEEeecCccccC-ceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccHh
Confidence 9999999999999999999999999 8899999999999999999999887653 356899999999987643
Q ss_pred hhHhhhcccccceEeCCCc----EEEecceeeccccccccccccc-----------------------------------
Q 011817 315 YKAELSKDTQASLEIAGEG----WFTLSKERFQTGEILFQPRMAD----------------------------------- 355 (477)
Q Consensus 315 ~~~e~~~~~~~~yelpd~~----~i~l~~er~~~~E~LF~P~~~g----------------------------------- 355 (477)
.-.-.. ..-.+.-||+. .+.++.|...+|=.||.|.+++
T Consensus 355 ~~~vQ~--~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~ 432 (618)
T KOG0797|consen 355 ELGVQL--TVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDF 432 (618)
T ss_pred hhhhhh--hhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccc
Confidence 111000 00000001100 1111112222222222111100
Q ss_pred ----------------------------------------------------------------cc----cCCHHHHHHH
Q 011817 356 ----------------------------------------------------------------VR----TMGLDQAVAL 367 (477)
Q Consensus 356 ----------------------------------------------------------------~~----~~~L~~~I~~ 367 (477)
.. ..++.+.|..
T Consensus 433 ~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~ 512 (618)
T KOG0797|consen 433 GGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIIS 512 (618)
T ss_pred cccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHH
Confidence 00 1245566888
Q ss_pred HHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCC--CCCceEEeCCC---CCcchhhhhhHHhhcCC
Q 011817 368 CMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSS--ISNGIRVIPPP---YGADTAWFGAKLVGNLS 442 (477)
Q Consensus 368 sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~--~~~~v~v~~~~---~~~~~aW~Ggsilasl~ 442 (477)
+|..|.. | ++++.+++.|.++||+.++||+.+-|++.+....|+. .-..|.|+.+| ++++-+|.||+|||.+.
T Consensus 513 sid~~~s-d-d~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~ 590 (618)
T KOG0797|consen 513 SIDSALS-D-DTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILD 590 (618)
T ss_pred hhhhhcc-c-hhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHH
Confidence 8888775 4 3478999999999999999999999999999877762 12468888776 78999999999999999
Q ss_pred CccccccccHHHHhhcCC
Q 011817 443 TFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 443 ~f~~~w~ITk~eY~e~G~ 460 (477)
.-.++| |++.||...|.
T Consensus 591 ~~~ELw-I~~~dW~~~G~ 607 (618)
T KOG0797|consen 591 FVRELW-IENSDWQVHGV 607 (618)
T ss_pred HHHHHh-eechhHhhhhh
Confidence 999999 99999999994
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=1.2e-28 Score=251.31 Aligned_cols=275 Identities=17% Similarity=0.172 Sum_probs=203.3
Q ss_pred eEEEeCCcceEEEEEecCCCCCcccccccc----------cCC--------------ccChH-------HHHHHHHHHHH
Q 011817 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLE----------FGN--------------IESPM-------YSRLRHFFATI 175 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~----------~G~--------------~~~Pi-------~~~l~~~~~~i 175 (477)
.|+||+||.++|+|+.|++ +....||++. +|+ +.+|+ |+.++.+|+++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~ 88 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYF 88 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHH
Confidence 3999999999999999775 3334455432 342 23565 57889999999
Q ss_pred hhhccc-CC-CCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCC-----cceEEE
Q 011817 176 YSRMQV-KP-STQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVV 247 (477)
Q Consensus 176 ~~~L~v-~p-~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~-----~tglVV 247 (477)
++++.. .+ ..++++++.|...+ ...|+. +.+ +|| +|++.++++++|++|+|++|. ++++||
T Consensus 89 ~~~~~~~~~~~~~~vvit~P~~~~------~~~r~~----~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVv 157 (335)
T PRK13930 89 IKKARGRRFFRKPRIVICVPSGIT------EVERRA----VRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVV 157 (335)
T ss_pred HHHHhhcccCCCCcEEEEECCCCC------HHHHHH----HHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEE
Confidence 876543 23 35788999998653 344433 333 455 999999999999999999987 578999
Q ss_pred eecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHhccccccchhHh-hhc-ccc
Q 011817 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-NINFGSLYTVRTLKEKLCYVAADYKAE-LSK-DTQ 324 (477)
Q Consensus 248 DiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~-~~~~~~~~~v~~iKe~~c~v~~d~~~e-~~~-~~~ 324 (477)
|+|+++|++++|.+|.++.. ...++||+++|+.|.+++..+ +.. .+.+.++++|+++|++..+.+.+ +.. ...
T Consensus 158 DiG~gttdvs~v~~g~~~~~---~~~~lGG~~id~~l~~~l~~~~~~~-~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~ 233 (335)
T PRK13930 158 DIGGGTTEVAVISLGGIVYS---ESIRVAGDEMDEAIVQYVRRKYNLL-IGERTAEEIKIEIGSAYPLDEEESMEVRGRD 233 (335)
T ss_pred EeCCCeEEEEEEEeCCEEee---cCcCchhHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHhhcCcCCCCCceEEEECcc
Confidence 99999999999999998754 568999999999999998765 222 24578999999999987654322 110 001
Q ss_pred cceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCC-eEEecCCCCccchHHHH
Q 011817 325 ASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKT-VILTGGSACLPGLAERL 403 (477)
Q Consensus 325 ~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~N-IvLtGG~S~ipG~~eRL 403 (477)
..+.+|+ .+.++.+++ .|++|.|. .++.+.|.++|++|+. ++ +.+++.| |+|+||+|++|||.+||
T Consensus 234 ~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~ipg~~~~l 300 (335)
T PRK13930 234 LVTGLPK--TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPP-EL--AADIIDRGIVLTGGGALLRGLDKLL 300 (335)
T ss_pred CCCCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCH-HH--hhHHHhCCEEEECchhcchhHHHHH
Confidence 1223332 456666665 48888763 3689999999999987 65 5678887 99999999999999999
Q ss_pred HHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 404 EKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 404 ~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
++++. +++....+|..++-.||++++.
T Consensus 301 ~~~~~----------~~v~~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 301 SEETG----------LPVHIAEDPLTCVARGTGKALE 327 (335)
T ss_pred HHHHC----------CCceecCCHHHHHHHHHHHHHh
Confidence 99986 2233334556788899999874
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=2.4e-27 Score=241.68 Aligned_cols=273 Identities=19% Similarity=0.182 Sum_probs=195.8
Q ss_pred eEEEeCCcceEEEEEecCCCCCcccccccc----------cCC--------------ccChH-------HHHHHHHHHHH
Q 011817 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLE----------FGN--------------IESPM-------YSRLRHFFATI 175 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~----------~G~--------------~~~Pi-------~~~l~~~~~~i 175 (477)
.|+||+||.++|+|++|++. .+..|+++. +|+ +.+|+ |+.++.+|+++
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~~ 85 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKYF 85 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHHH
Confidence 49999999999999999864 344454332 332 23565 56789999988
Q ss_pred hhh-cccCCCCC-CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCC-----cceEEE
Q 011817 176 YSR-MQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVV 247 (477)
Q Consensus 176 ~~~-L~v~p~~~-pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~-----~tglVV 247 (477)
+++ ++. +.++ .++++.|... ...+++ +++.+|| ++++.+.++++|++|+|++|. ++++||
T Consensus 86 ~~~~~~~-~~~~~~~vi~vP~~~-------~~~~r~----~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvv 153 (334)
T PRK13927 86 IKKVHKN-FRPSPRVVICVPSGI-------TEVERR----AVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVV 153 (334)
T ss_pred HHHHhhc-cCCCCcEEEEeCCCC-------CHHHHH----HHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEE
Confidence 754 455 5556 5777777543 233334 3444555 999999999999999999986 457999
Q ss_pred eecCceeEEEEE-EeCeeeecccEEEEcccHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHhccccccchh-Hhhhcc-c
Q 011817 248 NIGFQVTSVVPI-LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-NINFGSLYTVRTLKEKLCYVAADYK-AELSKD-T 323 (477)
Q Consensus 248 DiG~~~T~v~PV-~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~-~~~~~~~~~v~~iKe~~c~v~~d~~-~e~~~~-~ 323 (477)
|+|+++|+++++ ++|.+..+ . .++||+++|+.|.+++.++ +.. .+...++++|+++|++..+.+ .+.... .
T Consensus 154 DiGggttdvs~v~~~~~~~~~-~---~~lGG~~id~~l~~~l~~~~~~~-~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~ 228 (334)
T PRK13927 154 DIGGGTTEVAVISLGGIVYSK-S---VRVGGDKFDEAIINYVRRNYNLL-IGERTAERIKIEIGSAYPGDEVLEMEVRGR 228 (334)
T ss_pred EeCCCeEEEEEEecCCeEeeC-C---cCChHHHHHHHHHHHHHHHhCcC-cCHHHHHHHHHHhhccCCCCCCceEEEeCc
Confidence 999999999999 77776654 2 5899999999999988753 222 245689999999999865422 111000 0
Q ss_pred ccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccC-CeEEecCCCCccchHHH
Q 011817 324 QASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLAER 402 (477)
Q Consensus 324 ~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~-NIvLtGG~S~ipG~~eR 402 (477)
...+.+| ..+.++.++|. |++|.|. .++.+.|.++|++|+. ++ +.++++ +|+||||+|++|||.+|
T Consensus 229 ~~~~~~~--~~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~ipgl~~~ 295 (334)
T PRK13927 229 DLVTGLP--KTITISSNEIR--EALQEPL------SAIVEAVKVALEQTPP-EL--AADIVDRGIVLTGGGALLRGLDKL 295 (334)
T ss_pred ccCCCCC--eEEEECHHHHH--HHHHHHH------HHHHHHHHHHHHHCCc-hh--hhhhhcCCEEEECchhhhhHHHHH
Confidence 0112223 24666766664 8888763 4699999999999987 66 467776 59999999999999999
Q ss_pred HHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 403 LEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 403 L~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
|++++.. ++++. .+|..++-.||++++.
T Consensus 296 l~~~~~~--------~v~~~--~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 296 LSEETGL--------PVHVA--EDPLTCVARGTGKALE 323 (334)
T ss_pred HHHHHCC--------CcEec--CCHHHHHHHHHHHHHh
Confidence 9999851 13443 4457788899888864
No 19
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.94 E-value=1.6e-25 Score=228.44 Aligned_cols=273 Identities=22% Similarity=0.269 Sum_probs=194.6
Q ss_pred eEEEeCCcceEEEEEecCC----CCCcccc-----cccccCC--------------ccChH-------HHHHHHHHHHHh
Q 011817 127 SVIIDGGSGYCKFGWSKYD----CPSGRTA-----TFLEFGN--------------IESPM-------YSRLRHFFATIY 176 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~----~P~~~~~-----s~~~~G~--------------~~~Pi-------~~~l~~~~~~i~ 176 (477)
.|=||+||.++++--.++. .|+.+.- ..+.+|+ ..+|+ |+.++.+|++++
T Consensus 6 ~~giDlGt~~~~i~~~~~~~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~~~~~l~~~~ 85 (335)
T PRK13929 6 EIGIDLGTANILVYSKNKGIILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDMTTDLLKQIM 85 (335)
T ss_pred eEEEEcccccEEEEECCCcEEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHHHHHHHHHHH
Confidence 3789999999998322321 3443311 1123442 22454 567788888777
Q ss_pred h----hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcC-----CcceEEE
Q 011817 177 S----RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK-----RTSGIVV 247 (477)
Q Consensus 177 ~----~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G-----~~tglVV 247 (477)
+ .++..+..++++++.|...+ ...|+++.+ .++. +|++.+.+++++++|++++| ..+++||
T Consensus 86 ~~~~~~l~~~~~~~~vvitvP~~~~------~~~R~~l~~-a~~~---ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv 155 (335)
T PRK13929 86 KKAGKNIGMTFRKPNVVVCTPSGST------AVERRAISD-AVKN---CGAKNVHLIEEPVAAAIGADLPVDEPVANVVV 155 (335)
T ss_pred HHHHHhcCCCCCCCeEEEEcCCCCC------HHHHHHHHH-HHHH---cCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence 4 46777767899999998754 567766544 3333 99999999999999999997 5679999
Q ss_pred eecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHhccccccchhHhhhcc--cc
Q 011817 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-NINFGSLYTVRTLKEKLCYVAADYKAELSKD--TQ 324 (477)
Q Consensus 248 DiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~-~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~--~~ 324 (477)
|+|+++|+++++..|..+.. ...++||+++|++|.+.+... +... +...++++|+++|++..+++++.... ..
T Consensus 156 DiG~gtt~v~vi~~~~~~~~---~~~~~GG~~id~~l~~~l~~~~~~~~-~~~~AE~iK~~l~~~~~~~~~~~~~v~g~~ 231 (335)
T PRK13929 156 DIGGGTTEVAIISFGGVVSC---HSIRIGGDQLDEDIVSFVRKKYNLLI-GERTAEQVKMEIGYALIEHEPETMEVRGRD 231 (335)
T ss_pred EeCCCeEEEEEEEeCCEEEe---cCcCCHHHHHHHHHHHHHHHHhCcCc-CHHHHHHHHHHHcCCCCCCCCceEEEeCCc
Confidence 99999999999944444433 336899999999999998753 2222 45789999999999865543221110 01
Q ss_pred cceEeCCCcEEEecceeec--cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccC-CeEEecCCCCccchHH
Q 011817 325 ASLEIAGEGWFTLSKERFQ--TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLAE 401 (477)
Q Consensus 325 ~~yelpd~~~i~l~~er~~--~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~-NIvLtGG~S~ipG~~e 401 (477)
..+.+| ..+.++.+++. ++|.+|+ +.++|.++|++|++ ++ +..++. +||||||+|++|||.+
T Consensus 232 ~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~-~l--~~~~~~~gIvLtGG~s~lpgl~e 296 (335)
T PRK13929 232 LVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPP-EL--SGDIVDRGVILTGGGALLNGIKE 296 (335)
T ss_pred cCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCc-cc--chhhcCCCEEEEchhhhhhhHHH
Confidence 112334 46777777766 5777775 89999999999998 76 567787 7999999999999999
Q ss_pred HHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 011817 402 RLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (477)
Q Consensus 402 RL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (477)
||++++. +.+....+|..++-.|+..+
T Consensus 297 ~l~~~~~----------~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 297 WLSEEIV----------VPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHC----------CCceeCCCHHHHHHHHHHHH
Confidence 9999996 22333455678888996655
No 20
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.93 E-value=2.5e-25 Score=226.94 Aligned_cols=275 Identities=19% Similarity=0.160 Sum_probs=196.5
Q ss_pred EEEeCCcceEEEEEecC----CCCCccc---c------cccccCC--------------ccChH-------HHHHHHHHH
Q 011817 128 VIIDGGSGYCKFGWSKY----DCPSGRT---A------TFLEFGN--------------IESPM-------YSRLRHFFA 173 (477)
Q Consensus 128 VVID~GS~~~K~Gfage----~~P~~~~---~------s~~~~G~--------------~~~Pi-------~~~l~~~~~ 173 (477)
|=||+||.++++-..++ ..|+++. . .++.+|+ +.+|+ |+.++.+|+
T Consensus 5 ~giDlGt~~s~i~~~~~~~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~~ 84 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMIK 84 (333)
T ss_pred eEEecCcceEEEEECCCCEEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHHH
Confidence 77999999999865444 2355432 1 1133442 23566 567888999
Q ss_pred HHhhh-cccCCCCC-CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCC-----cceE
Q 011817 174 TIYSR-MQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGI 245 (477)
Q Consensus 174 ~i~~~-L~v~p~~~-pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~-----~tgl 245 (477)
+++++ ++.....+ +++++.|...+ ...|+. ++.+|| ++++.+.++++|++|+|++|. .+++
T Consensus 85 ~~l~~~~~~~~~~~~~~vitvP~~~~------~~~r~~-----~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~l 153 (333)
T TIGR00904 85 YFIKQVHSRKSFFKPRIVICVPSGIT------PVERRA-----VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSM 153 (333)
T ss_pred HHHHHHhcccccCCCcEEEEeCCCCC------HHHHHH-----HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEE
Confidence 88754 44322223 69999998764 455543 233455 999999999999999999997 6789
Q ss_pred EEeecCceeEEEEE-EeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHh--hhc-
Q 011817 246 VVNIGFQVTSVVPI-LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAE--LSK- 321 (477)
Q Consensus 246 VVDiG~~~T~v~PV-~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e--~~~- 321 (477)
|||+|+++|++++| ++|....+ ..++||+++|+.|.+++..+.....+.+.++++|+++|++..+..++ +..
T Consensus 154 VvDiG~gttdvs~v~~~~~~~~~----~~~lGG~did~~l~~~l~~~~~~~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~ 229 (333)
T TIGR00904 154 VVDIGGGTTEVAVISLGGIVVSR----SIRVGGDEFDEAIINYIRRTYNLLIGEQTAERIKIEIGSAYPLNDEPRKMEVR 229 (333)
T ss_pred EEEcCCCeEEEEEEEeCCEEecC----CccchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhccccccccccceeec
Confidence 99999999999999 77766554 24899999999999988754211224578999999999987653221 110
Q ss_pred ccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccC-CeEEecCCCCccchH
Q 011817 322 DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLA 400 (477)
Q Consensus 322 ~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~-NIvLtGG~S~ipG~~ 400 (477)
.....+.+|++. .++.+ .+.|++|.|. .++.+.|.+++++|+. ++ +..+++ ||+||||+|++|||.
T Consensus 230 ~~~~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~l~~~~IvL~GGss~ipgl~ 296 (333)
T TIGR00904 230 GRDLVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPP-EL--AADIVERGIVLTGGGALLRNLD 296 (333)
T ss_pred CccccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCc-hh--hhhhccCCEEEECcccchhhHH
Confidence 011234555543 44433 5778998873 3689999999999997 66 567886 899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 401 ERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 401 eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
+||++++. +++....+|..++-.||++++.
T Consensus 297 e~l~~~~~----------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 297 KLLSKETG----------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHHHHHC----------CCceecCChHHHHHHHHHHHHh
Confidence 99999995 3344445667889999998864
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.90 E-value=5.6e-23 Score=209.87 Aligned_cols=276 Identities=18% Similarity=0.201 Sum_probs=191.6
Q ss_pred EEEeCCcceEEEEEecC----CCCCccc-c----cccccCC--------------ccChH-------HHHHHHHHHHHhh
Q 011817 128 VIIDGGSGYCKFGWSKY----DCPSGRT-A----TFLEFGN--------------IESPM-------YSRLRHFFATIYS 177 (477)
Q Consensus 128 VVID~GS~~~K~Gfage----~~P~~~~-~----s~~~~G~--------------~~~Pi-------~~~l~~~~~~i~~ 177 (477)
+=||+|+.++++-..++ ..|+.+. . .++.+|+ ..+|+ ++.++.+|+++++
T Consensus 6 ~gIDlGt~~~~i~~~~~~~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~~~~ 85 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKGIVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKYFIN 85 (336)
T ss_pred eEEEcccccEEEEECCCCEEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHHHHH
Confidence 78999999999976654 2454321 1 1223343 12455 4678889999887
Q ss_pred hcccC-CCCCC-eEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCC-----cceEEEee
Q 011817 178 RMQVK-PSTQP-IVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVVNI 249 (477)
Q Consensus 178 ~L~v~-p~~~p-Vll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~-----~tglVVDi 249 (477)
++... +.++| ++++.|...+ ..+++ .++.+|+ +|++.+.+++++++|++++|. .+++|||+
T Consensus 86 ~~~~~~~~~~p~~vitvP~~~~-------~~~r~----~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDi 154 (336)
T PRK13928 86 KACGKRFFSKPRIMICIPTGIT-------SVEKR----AVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDI 154 (336)
T ss_pred HHhccCCCCCCeEEEEeCCCCC-------HHHHH----HHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEe
Confidence 76544 45677 8888876542 23333 3333445 999999999999999999986 67899999
Q ss_pred cCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhH-hhhcc-cccce
Q 011817 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKA-ELSKD-TQASL 327 (477)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~-e~~~~-~~~~y 327 (477)
|+++|++++|..|.++.. ...++||+++|+.|.+.+..+.--......++++|+++|++..+.++ ++... .....
T Consensus 155 Gggttdvsvv~~g~~~~~---~~~~lGG~did~~i~~~l~~~~~~~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~ 231 (336)
T PRK13928 155 GGGTTDIAVLSLGGIVTS---SSIKVAGDKFDEAIIRYIRKKYKLLIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVT 231 (336)
T ss_pred CCCeEEEEEEEeCCEEEe---CCcCCHHHHHHHHHHHHHHHHhchhcCHHHHHHHHHHhcccccccCCcEEEEecccccC
Confidence 999999999999987765 35799999999999998874321112346799999999877543111 11000 00011
Q ss_pred EeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccC-CeEEecCCCCccchHHHHHHH
Q 011817 328 EIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLAERLEKE 406 (477)
Q Consensus 328 elpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~-NIvLtGG~S~ipG~~eRL~~E 406 (477)
.+| ..+.++.+++. |+++.+. ..+.+.|.+++++++. ++ +...+. +|+||||+|++||+.++|+++
T Consensus 232 ~~~--~~~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~-~~--~~~~i~~~IvL~GG~s~ipgi~e~l~~~ 298 (336)
T PRK13928 232 GLP--KTITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPP-EL--SADIIDRGIIMTGGGALLHGLDKLLAEE 298 (336)
T ss_pred CCc--eEEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCc-cc--cHhhcCCCEEEECcccchhhHHHHHHHH
Confidence 222 23555555544 6655542 3588899999999987 66 456776 899999999999999999999
Q ss_pred HHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 407 LRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 407 L~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
+. ++|....+|..++-.||++++.
T Consensus 299 ~~----------~~v~~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 299 TK----------VPVYIAEDPISCVALGTGKMLE 322 (336)
T ss_pred HC----------CCceecCCHHHHHHHHHHHHHh
Confidence 96 2233334567899999888753
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.88 E-value=5.4e-22 Score=200.01 Aligned_cols=277 Identities=17% Similarity=0.189 Sum_probs=182.3
Q ss_pred eEEEeCCcceEEEEEecCC----CCCccc-----ccccccCC--------------ccChH-------HHHHHHHHHHHh
Q 011817 127 SVIIDGGSGYCKFGWSKYD----CPSGRT-----ATFLEFGN--------------IESPM-------YSRLRHFFATIY 176 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~----~P~~~~-----~s~~~~G~--------------~~~Pi-------~~~l~~~~~~i~ 176 (477)
-+=||+||.+|++--.++. +|+.+- ..++.+|+ +.+|+ ++..+.++++++
T Consensus 3 ~igIDLGT~~t~i~~~~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~~~l 82 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLRYFL 82 (326)
T ss_dssp EEEEEE-SSEEEEEETTTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHHHH
T ss_pred ceEEecCcccEEEEECCCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHHHHH
Confidence 4789999999999434432 355431 11223442 33565 467888888888
Q ss_pred hhcccC--CCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEee
Q 011817 177 SRMQVK--PSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNI 249 (477)
Q Consensus 177 ~~L~v~--p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDi 249 (477)
++..-. .....++++.|.-. +..+|+.+.+.+.+ .++..++++++|+++++|+|. ...+||||
T Consensus 83 ~k~~~~~~~~~p~vvi~vP~~~------T~verrA~~~a~~~----aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 83 KKALGRRSFFRPRVVICVPSGI------TEVERRALIDAARQ----AGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHTSS-SS--EEEEEE-SS--------HHHHHHHHHHHHH----TT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHhccCCCCCCCeEEEEeCCCC------CHHHHHHHHHHHHH----cCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 754432 23445888888754 35666665555544 899999999999999999984 35699999
Q ss_pred cCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEe
Q 011817 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEI 329 (477)
Q Consensus 250 G~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yel 329 (477)
|+++|.++-+..|.++.+ +.+++||+++++.+.+.+++++--..+...+|+||++++++...-+++ ...-..-.+
T Consensus 153 G~GtTdiavislggiv~s---~si~~gG~~~DeaI~~~ir~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~--~~~v~Grd~ 227 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIVAS---RSIRIGGDDIDEAIIRYIREKYNLLIGERTAEKIKIEIGSASPPEEEE--SMEVRGRDL 227 (326)
T ss_dssp -SS-EEEEEEETTEEEEE---EEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHH--EEEEEEEET
T ss_pred CCCeEEEEEEECCCEEEE---EEEEecCcchhHHHHHHHHHhhCcccCHHHHHHHHHhcceeeccCCCc--eEEEECccc
Confidence 999999999999999865 778999999999999999987643456789999999999886442222 101111122
Q ss_pred CCC--cEEEec-ceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCccccc-CCeEEecCCCCccchHHHHHH
Q 011817 330 AGE--GWFTLS-KERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWF-KTVILTGGSACLPGLAERLEK 405 (477)
Q Consensus 330 pd~--~~i~l~-~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~-~NIvLtGG~S~ipG~~eRL~~ 405 (477)
-+| ..+.++ .+-..+.+..++ .|.+.|.++++++|+ ++ ..+++ ++|+||||+|+++||.++|++
T Consensus 228 ~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pP-el--~~DI~~~GI~LtGGga~l~Gl~~~i~~ 295 (326)
T PF06723_consen 228 ITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPP-EL--AADILENGIVLTGGGALLRGLDEYISE 295 (326)
T ss_dssp TTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-H-HH--HHHHHHH-EEEESGGGGSBTHHHHHHH
T ss_pred cCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCH-HH--HHHHHHCCEEEEChhhhhccHHHHHHH
Confidence 223 234444 233333333332 488999999999999 87 44555 459999999999999999999
Q ss_pred HHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 406 ELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 406 EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
++. ++|...++|.+++-.|+..+..
T Consensus 296 ~~~----------~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 296 ETG----------VPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHS----------S-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHC----------CCEEEcCCHHHHHHHHHHHHHh
Confidence 995 5666667778999999776543
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.71 E-value=2.6e-16 Score=154.50 Aligned_cols=280 Identities=20% Similarity=0.225 Sum_probs=194.8
Q ss_pred eEEEeCCcceEEEEEecCC----CCCccc-------ccccccCC--------------ccChH-------HHHHHHHHHH
Q 011817 127 SVIIDGGSGYCKFGWSKYD----CPSGRT-------ATFLEFGN--------------IESPM-------YSRLRHFFAT 174 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~----~P~~~~-------~s~~~~G~--------------~~~Pi-------~~~l~~~~~~ 174 (477)
.|=||+|+.+|++---|.- +|+.+- +.++.+|+ ..+|+ ++..+.+++|
T Consensus 8 diGIDLGTanTlV~~k~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ml~~ 87 (342)
T COG1077 8 DIGIDLGTANTLVYVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELMLKY 87 (342)
T ss_pred cceeeecccceEEEEcCceEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHHHHH
Confidence 5889999999999544322 455431 11222332 23566 3456666777
Q ss_pred HhhhcccC---CCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEE
Q 011817 175 IYSRMQVK---PSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIV 246 (477)
Q Consensus 175 i~~~L~v~---p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglV 246 (477)
+.++..-+ +....++++.|... +.-.|+.++|...+ -+...++++++|.+|+.++|. +.++|
T Consensus 88 fik~~~~~~~~~~~prI~i~vP~g~------T~VErrAi~ea~~~----aGa~~V~lieEp~aAAIGaglpi~ep~G~mv 157 (342)
T COG1077 88 FIKKVHKNGSSFPKPRIVICVPSGI------TDVERRAIKEAAES----AGAREVYLIEEPMAAAIGAGLPIMEPTGSMV 157 (342)
T ss_pred HHHHhccCCCCCCCCcEEEEecCCc------cHHHHHHHHHHHHh----ccCceEEEeccHHHHHhcCCCcccCCCCCEE
Confidence 66543321 23335888888765 36677777776666 799999999999999999984 44899
Q ss_pred EeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcc----
Q 011817 247 VNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKD---- 322 (477)
Q Consensus 247 VDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~---- 322 (477)
||||.++|.|..+..|-++.. ....+||+.+++.+..+++++.--.....++++||.+.+++..+...+..+.
T Consensus 158 vDIGgGTTevaVISlggiv~~---~Sirv~GD~~De~Ii~yvr~~~nl~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~G 234 (342)
T COG1077 158 VDIGGGTTEVAVISLGGIVSS---SSVRVGGDKMDEAIIVYVRKKYNLLIGERTAEKIKIEIGSAYPEEEDEELEMEVRG 234 (342)
T ss_pred EEeCCCceeEEEEEecCEEEE---eeEEEecchhhHHHHHHHHHHhCeeecHHHHHHHHHHhcccccccCCccceeeEEe
Confidence 999999999999998888765 6689999999999999999865444567889999999999876433221110
Q ss_pred cccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCC-eEEecCCCCccchHH
Q 011817 323 TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKT-VILTGGSACLPGLAE 401 (477)
Q Consensus 323 ~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~N-IvLtGG~S~ipG~~e 401 (477)
......+| +.+.+..++ +.|.|=.| -..|.++|...+.+||+ ++. .+.+.+ |++|||+|++.||.+
T Consensus 235 rdl~~GlP--k~i~i~s~e--v~eal~~~------v~~Iveair~~Le~tpP-eL~--~DI~ergivltGGGalLrglD~ 301 (342)
T COG1077 235 RDLVTGLP--KTITINSEE--IAEALEEP------LNGIVEAIRLVLEKTPP-ELA--ADIVERGIVLTGGGALLRGLDR 301 (342)
T ss_pred eecccCCC--eeEEEcHHH--HHHHHHHH------HHHHHHHHHHHHhhCCc-hhc--ccHhhCceEEecchHHhcCchH
Confidence 11112233 344544332 11222111 13588999999999999 874 567777 999999999999999
Q ss_pred HHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh-hcCC
Q 011817 402 RLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV-GNLS 442 (477)
Q Consensus 402 RL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil-asl~ 442 (477)
.|.+|.. +.|.-.++|-.++-+|+.+. ..+.
T Consensus 302 ~i~~et~----------~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 302 LLSEETG----------VPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred hHHhccC----------CeEEECCChHHHHHhccchhhhhhH
Confidence 9999986 66766677778888885544 4443
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.56 E-value=1.2e-13 Score=134.47 Aligned_cols=229 Identities=16% Similarity=0.212 Sum_probs=148.0
Q ss_pred EeCCcceEEEEEe-cCCCCCccccc---ccccCCccChHHHHHHHHHHHHh----hhcccCCCCCCeEEEecCCCCCCcc
Q 011817 130 IDGGSGYCKFGWS-KYDCPSGRTAT---FLEFGNIESPMYSRLRHFFATIY----SRMQVKPSTQPIVVSIPICHYDDTE 201 (477)
Q Consensus 130 ID~GS~~~K~Gfa-ge~~P~~~~~s---~~~~G~~~~Pi~~~l~~~~~~i~----~~L~v~p~~~pVll~ep~~~~~~t~ 201 (477)
||+||.++|+=-. ..+.+-.+.+. .+.-|.+.. .+..+++++++. ++++. .-..++++.|....
T Consensus 2 ~dig~~~ik~v~~~~~~~~~~~~~~~~~~~~~g~I~d--~~~~~~~l~~l~~~a~~~~g~--~~~~vvisVP~~~~---- 73 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQPVAGVMQFADVVRDGIVVD--FLGAVEIVRRLKDTLEQKLGI--ELTHAATAIPPGTI---- 73 (239)
T ss_pred CCcccceEEEEEEecCCCEEEEEecccccccCCeEEE--hHHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCC----
Confidence 6999999997432 22211111110 111222211 245555555554 34443 23478999987653
Q ss_pred chHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHH
Q 011817 202 NAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLT 281 (477)
Q Consensus 202 ~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt 281 (477)
...|+.+.+.+-. .|+.-+.++.++++++.+++....+|||+|+++|+++-+.+|.++.. ...++||+++|
T Consensus 74 --~~~r~a~~~a~~~----aGl~~~~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~~---~~~~~GG~~it 144 (239)
T TIGR02529 74 --EGDPKVIVNVIES----AGIEVLHVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIYS---ADEPTGGTHMS 144 (239)
T ss_pred --cccHHHHHHHHHH----cCCceEEEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEEE---EeeecchHHHH
Confidence 2445443333322 89999999999999999988777899999999999999999988754 56799999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeeccccccccccccccccCCH
Q 011817 282 GYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGL 361 (477)
Q Consensus 282 ~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L 361 (477)
+.+.+.+.- +...+|++|..... .++. +.. .+|. ...+
T Consensus 145 ~~Ia~~~~i------~~~~AE~~K~~~~~-----~~~~----------------------~~~----i~~~-----~~~i 182 (239)
T TIGR02529 145 LVLAGAYGI------SFEEAEEYKRGHKD-----EEEI----------------------FPV----VKPV-----YQKM 182 (239)
T ss_pred HHHHHHhCC------CHHHHHHHHHhcCC-----HHHH----------------------HHH----HHHH-----HHHH
Confidence 988765542 45778888876431 1110 000 0110 0124
Q ss_pred HHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHH
Q 011817 362 DQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKL 437 (477)
Q Consensus 362 ~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsi 437 (477)
.+.|.+++++.++ ..|+||||+|++||+.+.|++++. ++|..+.+|.+++-+|+.+
T Consensus 183 ~~~i~~~l~~~~~----------~~v~LtGG~a~ipgl~e~l~~~lg----------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 183 ASIVKRHIEGQGV----------KDLYLVGGACSFSGFADVFEKQLG----------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHhCCC----------CEEEEECchhcchhHHHHHHHHhC----------CCcccCCCCCeehhheeec
Confidence 5555566654443 369999999999999999999985 3344456778888888764
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.50 E-value=2.7e-12 Score=127.06 Aligned_cols=234 Identities=17% Similarity=0.176 Sum_probs=146.2
Q ss_pred ceEEEeCCcceEEEEEecCCCCCc--c--ccc-ccccCCccChHHHHHHHHHHHHh----hhcccCCCCCCeEEEecCCC
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSG--R--TAT-FLEFGNIESPMYSRLRHFFATIY----SRMQVKPSTQPIVVSIPICH 196 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~--~--~~s-~~~~G~~~~Pi~~~l~~~~~~i~----~~L~v~p~~~pVll~ep~~~ 196 (477)
-.++||+||..+|+=-+ +..+.. . .++ -+..|.+.. .+...+.++.+. +.++++ -..|+++.|...
T Consensus 25 ~~~~iDiGSssi~~vv~-~~~~~~~~~~~~~~~~vr~G~i~d--i~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~ 99 (267)
T PRK15080 25 LKVGVDLGTANIVLAVL-DEDGQPVAGALEWADVVRDGIVVD--FIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGT 99 (267)
T ss_pred EEEEEEccCceEEEEEE-cCCCCEEEEEeccccccCCCEEee--HHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCC
Confidence 46999999999997554 333331 0 000 111232221 233333343333 345554 235667777643
Q ss_pred CCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCCcceEEEeecCceeEEEEEEeCeeeecccEEEEccc
Q 011817 197 YDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG 276 (477)
Q Consensus 197 ~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vG 276 (477)
. ..+|+.+.+.+- +.|+.-..++.++.+++.+.+...++|||+|+++|+++-+.+|.+... ...++|
T Consensus 100 ~------~~~~~~~~~~~~----~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~---~~~~~G 166 (267)
T PRK15080 100 S------EGDPRAIINVVE----SAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS---ADEPTG 166 (267)
T ss_pred C------chhHHHHHHHHH----HcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE---ecccCc
Confidence 2 233444332222 288888889999999999888777899999999999999999988754 567999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeecccccccccccccc
Q 011817 277 ALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356 (477)
Q Consensus 277 G~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~ 356 (477)
|+++|+.+.+.+.. +...+|.+|..... .+++ ..+-+.++
T Consensus 167 G~~it~~Ia~~l~i------~~~eAE~lK~~~~~-----~~~~----------------------~~ii~~~~------- 206 (267)
T PRK15080 167 GTHMSLVLAGAYGI------SFEEAEQYKRDPKH-----HKEI----------------------FPVVKPVV------- 206 (267)
T ss_pred hHHHHHHHHHHhCC------CHHHHHHHHhccCC-----HHHH----------------------HHHHHHHH-------
Confidence 99999998876642 35677888865320 0000 00001110
Q ss_pred ccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhH
Q 011817 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAK 436 (477)
Q Consensus 357 ~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggs 436 (477)
..+.+.|.+.++..+ .+.|+||||+|++||+.+.+++.+. ++|..+++|.+++-+|+.
T Consensus 207 --~~i~~~i~~~l~~~~----------~~~IvLtGG~s~lpgl~e~l~~~lg----------~~v~~~~~P~~~~a~Gaa 264 (267)
T PRK15080 207 --EKMASIVARHIEGQD----------VEDIYLVGGTCCLPGFEEVFEKQTG----------LPVHKPQHPLFVTPLGIA 264 (267)
T ss_pred --HHHHHHHHHHHhcCC----------CCEEEEECCcccchhHHHHHHHHhC----------CCcccCCCchHHHHHHHH
Confidence 113344444444322 2579999999999999999999995 223345677899999988
Q ss_pred Hhh
Q 011817 437 LVG 439 (477)
Q Consensus 437 ila 439 (477)
+++
T Consensus 265 ~~~ 267 (267)
T PRK15080 265 LSC 267 (267)
T ss_pred hhC
Confidence 763
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.29 E-value=3.5e-10 Score=124.75 Aligned_cols=211 Identities=17% Similarity=0.188 Sum_probs=129.0
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~ 260 (477)
..++++.|.... ...|+.+++.. +. .|+..+.++++|.+|++++|. .+-+|+|+|+++++|+-+.
T Consensus 136 ~~~VItVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 136 TQAVITVPAYFN------DSQRQATKDAG-KI---AGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred CeEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEE
Confidence 358889998763 45566554433 33 799999999999999999874 4579999999999998875
Q ss_pred eCeeeec--ccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchhHhhhccccc
Q 011817 261 HGKVMRK--VGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (477)
Q Consensus 261 dG~~l~~--~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (477)
.+..... +.....++||+++++.|.+.+.++ +.+... ...++++|+.++... ..
T Consensus 206 ~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~-----------~~ 274 (621)
T CHL00094 206 VGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT-----------QT 274 (621)
T ss_pred EcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------ce
Confidence 4422111 012235799999999988766432 222211 134566777654221 11
Q ss_pred ceEeCC------C-c--EEEecceeec-cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCC
Q 011817 326 SLEIAG------E-G--WFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (477)
Q Consensus 326 ~yelpd------~-~--~i~l~~er~~-~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (477)
.+.+|. | . ...|..++|. ..+.++. .+.+.|.+++.+... . ..-...|+|+||+|+
T Consensus 275 ~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssr 340 (621)
T CHL00094 275 EINLPFITATQTGPKHIEKTLTRAKFEELCSDLIN---------RCRIPVENALKDAKL-D----KSDIDEVVLVGGSTR 340 (621)
T ss_pred EEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCcEEEEECCccC
Confidence 122220 1 1 1223333321 1121211 244455566665443 1 233478999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 396 ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+|++.+.|.+.+... +....+|..++..||++.|..
T Consensus 341 iP~v~~~l~~~fg~~----------~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 341 IPAIQELVKKLLGKK----------PNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred ChHHHHHHHHHhCCC----------cCcCCCchhHHHhhhHHHHHH
Confidence 999999999877521 122234567889999998864
No 27
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.27 E-value=4.6e-10 Score=124.01 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=129.9
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEEe
Q 011817 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILH 261 (477)
Q Consensus 187 pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~d 261 (477)
.++++.|.... ...|+.+++.. +. .|++-+.++++|.+|++++|. .+-+|+|+|+++++++.+--
T Consensus 135 ~~VItVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~ 204 (627)
T PRK00290 135 EAVITVPAYFN------DAQRQATKDAG-KI---AGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEI 204 (627)
T ss_pred eEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEE
Confidence 58999998764 45666555433 33 899999999999999998863 56899999999999987644
Q ss_pred Ce-eeec-ccEEEEcccHHHHHHHHHHHHHhc-----CCCCC-c-------HHHHHHHHHhccccccchhHhhhcccccc
Q 011817 262 GK-VMRK-VGVEVMGLGALKLTGYLRLLMQQN-----NINFG-S-------LYTVRTLKEKLCYVAADYKAELSKDTQAS 326 (477)
Q Consensus 262 G~-~l~~-~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~-~-------~~~v~~iKe~~c~v~~d~~~e~~~~~~~~ 326 (477)
+. .+.- .......+||.++++.|.+.+..+ +.++. . ...++.+|+.++.-. ...
T Consensus 205 ~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~-----------~~~ 273 (627)
T PRK00290 205 GDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ-----------QTE 273 (627)
T ss_pred eCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------eEE
Confidence 32 1110 011234799999999988776432 22221 1 124566666654211 111
Q ss_pred eEeC----C--C---cEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCcc
Q 011817 327 LEIA----G--E---GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLP 397 (477)
Q Consensus 327 yelp----d--~---~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ip 397 (477)
+.++ | | ..+.|..+.| |-++.|.+ ..+.+.|.+++..... . ..-...|+|+||+|++|
T Consensus 274 i~i~~~~~d~~g~~~~~~~itR~~f---e~l~~~l~-----~~~~~~i~~~l~~a~~-~----~~~id~ViLvGGssriP 340 (627)
T PRK00290 274 INLPFITADASGPKHLEIKLTRAKF---EELTEDLV-----ERTIEPCKQALKDAGL-S----VSDIDEVILVGGSTRMP 340 (627)
T ss_pred EEEeecccCCCCCeEEEEEECHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----hhhCcEEEEECCcCCCh
Confidence 2221 1 1 1233444333 22222211 1355666667766554 2 22347899999999999
Q ss_pred chHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 398 GLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 398 G~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
.+.++|++.+.. .+....++..++..||++.|..
T Consensus 341 ~v~~~l~~~fg~----------~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 341 AVQELVKEFFGK----------EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred HHHHHHHHHhCC----------CCCcCcCChHHHHHhHHHHHHH
Confidence 999999987742 1222334567899999998763
No 28
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.26 E-value=4.5e-10 Score=124.07 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=130.3
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~ 260 (477)
..+||+.|.... ...|+.+++ ..+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+-
T Consensus 161 ~~aVITVPayF~------~~qR~at~~-Aa~~---AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 161 SNAVVTCPAYFN------DAQRQATKD-AGTI---AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred ceEEEEECCCCC------hHHHHHHHH-HHHH---cCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 358899888763 455655444 3343 899999999999999999874 4579999999999998774
Q ss_pred --eCeeeecccEEEEcccHHHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhccccccchhHhhhccccc
Q 011817 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (477)
Q Consensus 261 --dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~-----~~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (477)
+|..--.++.-...+||.++++.|.+.+.. .+.+... ...++++|+.++.... .
T Consensus 231 ~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~-----------~ 299 (657)
T PTZ00186 231 IAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME-----------T 299 (657)
T ss_pred EeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc-----------e
Confidence 554321111223579999999888876643 2222211 1345666766543211 1
Q ss_pred ceEeC------CC---cEEEecceeec-cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCC
Q 011817 326 SLEIA------GE---GWFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (477)
Q Consensus 326 ~yelp------d~---~~i~l~~er~~-~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (477)
.+++| +| ..+.|+.+.|. ..+.|+. .+.+.+.+++..... + ..-...|+|+||+|+
T Consensus 300 ~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~---------r~~~~v~~~L~~a~~-~----~~dId~VvLVGGssr 365 (657)
T PTZ00186 300 EVNLPFITANADGAQHIQMHISRSKFEGITQRLIE---------RSIAPCKQCMKDAGV-E----LKEINDVVLVGGMTR 365 (657)
T ss_pred EEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCCEEEEECCccc
Confidence 11221 11 13445444331 2233332 244556666665443 2 233467999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 396 ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
||++.+.|.+.+... .....+|..++-+||+++|.
T Consensus 366 iP~V~~~l~~~fg~~----------~~~~~nPdeaVA~GAAi~a~ 400 (657)
T PTZ00186 366 MPKVVEEVKKFFQKD----------PFRGVNPDEAVALGAATLGG 400 (657)
T ss_pred ChHHHHHHHHHhCCC----------ccccCCCchHHHHhHHHHHH
Confidence 999999999877521 11223456788899999986
No 29
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.26 E-value=4.4e-10 Score=123.50 Aligned_cols=210 Identities=18% Similarity=0.203 Sum_probs=129.6
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC------cceEEEeecCceeEEEEEE
Q 011817 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 187 pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~------~tglVVDiG~~~T~v~PV~ 260 (477)
.++++.|.... ...|+.+++.. +. .|++-+.++++|.+|++++|. .+-+|+|+|+++++++.+-
T Consensus 132 ~~VItVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~ 201 (595)
T TIGR02350 132 EAVITVPAYFN------DAQRQATKDAG-KI---AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILE 201 (595)
T ss_pred eEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEE
Confidence 58999998764 45666655433 33 799999999999999998763 4579999999999997764
Q ss_pred e--Cee-eecccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchhHhhhcccc
Q 011817 261 H--GKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQ 324 (477)
Q Consensus 261 d--G~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~ 324 (477)
- |.. +.. ......+||.++++.|.+.+..+ +..+.. ...++.+|+.++... .
T Consensus 202 ~~~~~~~v~~-~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~-----------~ 269 (595)
T TIGR02350 202 IGDGVFEVLS-TAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL-----------S 269 (595)
T ss_pred ecCCeEEEEE-ecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------c
Confidence 2 222 111 11234799999999988776432 222211 124566676654211 1
Q ss_pred cceEeC----C--C---cEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCC
Q 011817 325 ASLEIA----G--E---GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (477)
Q Consensus 325 ~~yelp----d--~---~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (477)
..+.++ | | ..+.|..+.| |-++.|-+ ..+.+.|.++++.... . ..-...|+|+||+|+
T Consensus 270 ~~i~i~~~~~~~~g~~~~~~~itr~~f---e~l~~~l~-----~~~~~~i~~~l~~a~~-~----~~~i~~V~LvGGssr 336 (595)
T TIGR02350 270 TEINLPFITADASGPKHLEMTLTRAKF---EELTADLV-----ERTKEPVRQALKDAGL-S----ASDIDEVILVGGSTR 336 (595)
T ss_pred eEEEeeecccCCCCCeeEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----HhHCcEEEEECCccc
Confidence 112221 1 1 1234444333 22222211 1355666667666543 1 233478999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 396 ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+|++.+.|++.+.. ++....++..++..||++.|..
T Consensus 337 iP~v~~~i~~~f~~----------~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 337 IPAVQELVKDFFGK----------EPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred ChHHHHHHHHHhCC----------cccCCcCcHHHHHHHHHHHHHH
Confidence 99999999987641 1223345577899999998763
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.26 E-value=3.5e-10 Score=125.42 Aligned_cols=211 Identities=17% Similarity=0.193 Sum_probs=131.7
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~ 260 (477)
..++|+.|.... ...|+.+++.. +. .|++.+.++++|.+|++++|. .+-+|+|+|+++++|+.+.
T Consensus 175 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 175 KQAVITVPAYFN------DSQRQATKDAG-KI---AGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEE
Confidence 468999998764 45666655433 33 899999999999999999974 3679999999999998763
Q ss_pred --eCeeeecccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchhHhhhccccc
Q 011817 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (477)
Q Consensus 261 --dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (477)
+|...-....-...+||.++++.|.+.+..+ +.+... ...++.+|+.++.-. ..
T Consensus 245 ~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~-----------~~ 313 (663)
T PTZ00400 245 ILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT-----------QT 313 (663)
T ss_pred ecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------ce
Confidence 4543211122235799999999998876542 222211 123566666654211 11
Q ss_pred ceEeC----C--C---cEEEecceee-ccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCC
Q 011817 326 SLEIA----G--E---GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (477)
Q Consensus 326 ~yelp----d--~---~~i~l~~er~-~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (477)
.+.++ | | -.+.+..+.| ...+.+|. .+.+.|.+++.+... . ..-...|+|+||+|+
T Consensus 314 ~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssr 379 (663)
T PTZ00400 314 EINLPFITADQSGPKHLQIKLSRAKLEELTHDLLK---------KTIEPCEKCIKDAGV-K----KDELNDVILVGGMTR 379 (663)
T ss_pred EEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HHHCcEEEEECCccC
Confidence 12221 1 1 1234443333 12222222 355566677766553 1 233578999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 396 ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+|++.++|++.+... +....++..++-.||++.|..
T Consensus 380 iP~v~~~l~~~f~~~----------~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 380 MPKVSETVKKIFGKE----------PSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred ChHHHHHHHHHhCCC----------cccCCCCccceeeccHHHHHh
Confidence 999999999887421 122334567888899988754
No 31
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.24 E-value=6.4e-10 Score=122.09 Aligned_cols=212 Identities=18% Similarity=0.167 Sum_probs=131.2
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~ 260 (477)
..++++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+.+-
T Consensus 130 ~~~VItVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 130 VGAVITVPAYFD------DAQRQATKDA-ARL---AGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred ceEEEEECCCCC------HHHHHHHHHH-HHH---cCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEE
Confidence 368999998764 4566655544 333 899999999999999988763 4579999999999998764
Q ss_pred --eCee-eecccEEEEcccHHHHHHHHHHHHHhc-CCCC-CcH-------HHHHHHHHhccccccchhHhhhcccccceE
Q 011817 261 --HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-NINF-GSL-------YTVRTLKEKLCYVAADYKAELSKDTQASLE 328 (477)
Q Consensus 261 --dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~-~~~~-~~~-------~~v~~iKe~~c~v~~d~~~e~~~~~~~~ye 328 (477)
+|.. +.. +.....+||.++++.|.+.+..+ +... .+. ..++.+|+.++.-. .....++
T Consensus 200 ~~~~~~~vla-~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~---------~~~i~i~ 269 (599)
T TIGR01991 200 LTKGVFEVLA-TGGDSALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKEALTDAE---------SVEVDFT 269 (599)
T ss_pred EcCCeEEEEE-EcCCCCCCHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCCc---------eEEEEEE
Confidence 3322 111 11224799999999999887543 3322 111 23455555543211 0011122
Q ss_pred eCCCc--EEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHH
Q 011817 329 IAGEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKE 406 (477)
Q Consensus 329 lpd~~--~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~E 406 (477)
.+ |. .+.++.+.| |-++.|.+ ..+.+.|.++++.... . ..-...|+|+||+|++|++.++|.+.
T Consensus 270 ~~-g~~~~~~itr~ef---e~l~~~ll-----~~i~~~i~~~L~~a~~-~----~~~id~ViLvGGssriP~V~~~l~~~ 335 (599)
T TIGR01991 270 LD-GKDFKGKLTRDEF---EALIQPLV-----QKTLSICRRALRDAGL-S----VEEIKGVVLVGGSTRMPLVRRAVAEL 335 (599)
T ss_pred EC-CcEEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----hhhCCEEEEECCcCCChHHHHHHHHH
Confidence 22 32 234444333 22223211 1355666667766543 1 23347899999999999999999987
Q ss_pred HHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 407 LRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 407 L~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+... +....++..++-.||++.|..
T Consensus 336 f~~~----------~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 336 FGQE----------PLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred hCCC----------CCCCCCCcHHHHHHHHHHHHH
Confidence 6421 122345678899999998864
No 32
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.23 E-value=7.7e-10 Score=121.07 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=130.1
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~ 260 (477)
..+|++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+-
T Consensus 142 ~~aVITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 142 TKAVITVPAHFN------DAARGEVMLA-AKI---AGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred ceEEEEECCCCC------HHHHHHHHHH-HHH---cCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEE
Confidence 368999998764 4566655544 333 799999999999999999874 3469999999999987763
Q ss_pred --eCee-eecccEEEEcccHHHHHHHHHHHHHhcCC-CC--CcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcE
Q 011817 261 --HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQNNI-NF--GSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGW 334 (477)
Q Consensus 261 --dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~~~-~~--~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~ 334 (477)
+|.. +.. ..-...+||.++++.|.+.+..+-- .. .....++..|+.++.-. .+.. ..
T Consensus 212 ~~~~~~~V~a-t~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~-------------~~~~---~~ 274 (595)
T PRK01433 212 IQEGIFQVIA-TNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD-------------SFNN---DN 274 (595)
T ss_pred EeCCeEEEEE-EcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc-------------cccc---ce
Confidence 4432 111 1122469999999999988765421 11 11234666676654211 1111 14
Q ss_pred EEecceeec-cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCC
Q 011817 335 FTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPS 413 (477)
Q Consensus 335 i~l~~er~~-~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~ 413 (477)
+.++.+.|. ..+.+|+ .+.+.|.++++.....+ ...|+|+||+|++|.+.+.|.+.+.
T Consensus 275 ~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~~~-------Id~ViLvGGssriP~v~~~l~~~f~----- 333 (595)
T PRK01433 275 ISINKQTLEQLILPLVE---------RTINIAQECLEQAGNPN-------IDGVILVGGATRIPLIKDELYKAFK----- 333 (595)
T ss_pred EEEcHHHHHHHHHHHHH---------HHHHHHHHHHhhcCccc-------CcEEEEECCcccChhHHHHHHHHhC-----
Confidence 555544431 2222322 24455555555543212 3679999999999999999997764
Q ss_pred CCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 414 SISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 414 ~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
.++....+|..++-.||++.|..
T Consensus 334 -----~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 334 -----VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred -----CCceecCCchHHHHHHHHHHHHH
Confidence 12333445678899999999864
No 33
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.22 E-value=6.9e-10 Score=122.98 Aligned_cols=212 Identities=18% Similarity=0.224 Sum_probs=129.4
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC------cceEEEeecCceeEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPI 259 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~------~tglVVDiG~~~T~v~PV 259 (477)
..++|+.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+
T Consensus 134 ~~~VITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~ 203 (653)
T PRK13411 134 TQAVITVPAYFT------DAQRQATKDA-GTI---AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSIL 203 (653)
T ss_pred ceEEEEECCCCC------cHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEE
Confidence 358999998764 4566665553 333 899999999999999998874 346999999999998865
Q ss_pred E--eCee-eecccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchhHhhhccc
Q 011817 260 L--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDT 323 (477)
Q Consensus 260 ~--dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~ 323 (477)
- +|.. +.. +.-...+||.++++.|.+.+..+ +.+... ...+++.|+.++.-.
T Consensus 204 ~~~~~~~~V~a-t~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~----------- 271 (653)
T PRK13411 204 QLGDGVFEVKA-TAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML----------- 271 (653)
T ss_pred EEeCCEEEEEE-EecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------
Confidence 3 2221 111 12224699999999888776532 222211 123556666654211
Q ss_pred ccceEeC----C---C--cEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCC
Q 011817 324 QASLEIA----G---E--GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (477)
Q Consensus 324 ~~~yelp----d---~--~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (477)
...+.+| | + ..+.|..+.| |-++.|-+ ..+.+.|.+++++... . ..-...|+|+||+|
T Consensus 272 ~~~i~i~~~~~d~~~~~~~~~~itR~~f---e~l~~~l~-----~~~~~~i~~~L~~a~~-~----~~~id~ViLvGGss 338 (653)
T PRK13411 272 TTSINLPFITADETGPKHLEMELTRAKF---EELTKDLV-----EATIEPMQQALKDAGL-K----PEDIDRVILVGGST 338 (653)
T ss_pred ceEEEEeeeccCCCCCeeEEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----HHHCcEEEEECCCC
Confidence 1112221 1 1 1234444333 22222211 1245566666666553 2 23347899999999
Q ss_pred CccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 395 CLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 395 ~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
++|.+.++|++.+... ++....++..++-.||++.|..
T Consensus 339 riP~v~~~l~~~f~~~---------~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 339 RIPAVQEAIQKFFGGK---------QPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred CcchHHHHHHHHcCCc---------CcCCCCCchHHHHHHHHHHHHh
Confidence 9999999999776421 1222334567888899998863
No 34
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.22 E-value=1.1e-09 Score=121.47 Aligned_cols=209 Identities=15% Similarity=0.173 Sum_probs=127.0
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE-
Q 011817 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL- 260 (477)
Q Consensus 187 pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~- 260 (477)
.+||+.|...+ ...|+.+++.. +. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+.+.
T Consensus 137 ~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~ 206 (668)
T PRK13410 137 GAVITVPAYFN------DSQRQATRDAG-RI---AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEV 206 (668)
T ss_pred eEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEE
Confidence 58999998764 45666555433 44 899999999999999999874 4579999999999998764
Q ss_pred -eCee-eecccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchhHhhhccccc
Q 011817 261 -HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (477)
Q Consensus 261 -dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (477)
+|.. +.. +.-...+||.++++.|.+.+..+ +.++.. ...++++|+.++... ..
T Consensus 207 ~~g~~~V~a-t~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~-----------~~ 274 (668)
T PRK13410 207 GNGVFEVKA-TSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS-----------VT 274 (668)
T ss_pred cCCeEEEEE-eecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------ce
Confidence 3322 111 12234799999999888766432 222211 123556666553211 11
Q ss_pred ceEeC----C--C-c--EEEecceeec-cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCC
Q 011817 326 SLEIA----G--E-G--WFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (477)
Q Consensus 326 ~yelp----d--~-~--~i~l~~er~~-~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ 395 (477)
.+.+| + + . .+.+..+.|. ..+.++. .+.+.|.+++..... ...-...|+|+||+|+
T Consensus 275 ~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~---------r~~~~i~~~L~~ag~-----~~~dId~VvLVGGssR 340 (668)
T PRK13410 275 DISLPFITATEDGPKHIETRLDRKQFESLCGDLLD---------RLLRPVKRALKDAGL-----SPEDIDEVVLVGGSTR 340 (668)
T ss_pred EEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-----ChhhCcEEEEECCccc
Confidence 22222 1 1 1 2233333321 1222222 345556666655432 1233468999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 396 ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+|.+.+.|.+.+... +....++..++-+||++.|..
T Consensus 341 iP~V~~~l~~~fg~~----------~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 341 MPMVQQLVRTLIPRE----------PNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred cHHHHHHHHHHcCCC----------cccCCCCchHHHHhHHHHHHh
Confidence 999999998765421 122234466888999998864
No 35
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.20 E-value=1.2e-09 Score=121.21 Aligned_cols=210 Identities=19% Similarity=0.191 Sum_probs=128.6
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~ 260 (477)
..++|+.|.... ...|+.+++.. +. .|+..+.++++|++|++++|. .+-+|+|+|+++++|+.+-
T Consensus 173 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 173 TKAVITVPAYFN------DSQRTATKDAG-RI---AGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred CeEEEEECCCCC------HHHHHHHHHHH-HH---CCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 468999998764 45566555433 33 899999999999999998874 4579999999999988764
Q ss_pred eCe-ee--ecccEEEEcccHHHHHHHHHHHHHhc-----CCCCC-c-------HHHHHHHHHhccccccchhHhhhcccc
Q 011817 261 HGK-VM--RKVGVEVMGLGALKLTGYLRLLMQQN-----NINFG-S-------LYTVRTLKEKLCYVAADYKAELSKDTQ 324 (477)
Q Consensus 261 dG~-~l--~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~-~-------~~~v~~iKe~~c~v~~d~~~e~~~~~~ 324 (477)
-+. .+ .. +.-...+||.++++.|.+.+..+ +.+.. . ...++++|+.++... .
T Consensus 243 ~~~~~~eVla-~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~-----------~ 310 (673)
T PLN03184 243 VGDGVFEVLS-TSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT-----------Q 310 (673)
T ss_pred ecCCEEEEEE-ecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------c
Confidence 332 11 11 11235799999999998876542 22221 1 123556666654321 1
Q ss_pred cceEeC------CC-c--EEEecceeec-cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCC
Q 011817 325 ASLEIA------GE-G--WFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (477)
Q Consensus 325 ~~yelp------d~-~--~i~l~~er~~-~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (477)
..+.++ ++ . .+.|..+.|. ..+.+++ .+.+.|.+++..... +. .=...|+|+||+|
T Consensus 311 ~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------r~~~~i~~~L~~a~~-~~----~dId~ViLvGGss 376 (673)
T PLN03184 311 TSISLPFITATADGPKHIDTTLTRAKFEELCSDLLD---------RCKTPVENALRDAKL-SF----KDIDEVILVGGST 376 (673)
T ss_pred ceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-Ch----hHccEEEEECCcc
Confidence 112221 11 1 2234433321 1222222 244556666666554 21 2237899999999
Q ss_pred CccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 395 CLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 395 ~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
++|.+.++|.+.+... + ....++..++-.||++.|..
T Consensus 377 riP~V~~~i~~~fg~~--------~--~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 377 RIPAVQELVKKLTGKD--------P--NVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred ccHHHHHHHHHHhCCC--------c--ccccCcchHHHHHHHHHHHH
Confidence 9999999999887421 1 11224467888999998763
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.20 E-value=1.5e-09 Score=120.34 Aligned_cols=212 Identities=20% Similarity=0.233 Sum_probs=131.0
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-------cceEEEeecCceeEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-------TSGIVVNIGFQVTSVVP 258 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-------~tglVVDiG~~~T~v~P 258 (477)
..++|+.|.... ...|+.+++ ..+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-
T Consensus 141 ~~~VItVPa~f~------~~qR~a~~~-Aa~~---AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv 210 (653)
T PTZ00009 141 KDAVVTVPAYFN------DSQRQATKD-AGTI---AGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSL 210 (653)
T ss_pred ceeEEEeCCCCC------HHHHHHHHH-HHHH---cCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEE
Confidence 368999998764 455665544 3333 899999999999999998863 46799999999999877
Q ss_pred EE--eCeeeecccEEEEcccHHHHHHHHHHHHHhc------CCCCCc--------HHHHHHHHHhccccccchhHhhhcc
Q 011817 259 IL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN------NINFGS--------LYTVRTLKEKLCYVAADYKAELSKD 322 (477)
Q Consensus 259 V~--dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~------~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~ 322 (477)
+- +|..--....-...+||.+++..|.+.+..+ +..+.. ...++++|+.++..
T Consensus 211 ~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------- 279 (653)
T PTZ00009 211 LTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------- 279 (653)
T ss_pred EEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC-----------
Confidence 64 3432111011224799999999988776432 122211 12456666665421
Q ss_pred cccceEeC---CCc--EEEecceeec-cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCc
Q 011817 323 TQASLEIA---GEG--WFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL 396 (477)
Q Consensus 323 ~~~~yelp---d~~--~i~l~~er~~-~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~i 396 (477)
....+.++ ++. .+.|..+.|. ..+.+|. .+.+.|.+++..+.. + ..-...|+|+||+|++
T Consensus 280 ~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssri 345 (653)
T PTZ00009 280 TQATIEIDSLFEGIDYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDAGM-D----KRSVHEVVLVGGSTRI 345 (653)
T ss_pred ceEEEEEEeccCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HHHCcEEEEECCCCCC
Confidence 11122322 222 3444444332 2333332 245566677776654 2 2234789999999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 397 PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 397 pG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
|.+.++|.+.+... ++....++..++-.||++.|..
T Consensus 346 P~v~~~i~~~f~~~---------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 346 PKVQSLIKDFFNGK---------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred hhHHHHHHHHhCCC---------CCCCCCCcchHHhhhhhhhHHH
Confidence 99999998777421 1222234567888899988653
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.16 E-value=1.4e-09 Score=119.82 Aligned_cols=209 Identities=17% Similarity=0.138 Sum_probs=127.2
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~ 260 (477)
..++++.|.... ...|+.+++.. +. .|++-+.++++|.+|++++|. .+-+|+|+|+++++|+.+-
T Consensus 150 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 150 DGAVITVPAYFD------DAQRQATKDAA-RL---AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 368999998764 45666555443 33 899999999999999988763 3468999999999988764
Q ss_pred --eCee-eecccEEEEcccHHHHHHHHHHHHHhc-CCCC-CcH-------HHHHHHHHhccccccchhHhhhcccccceE
Q 011817 261 --HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-NINF-GSL-------YTVRTLKEKLCYVAADYKAELSKDTQASLE 328 (477)
Q Consensus 261 --dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~-~~~~-~~~-------~~v~~iKe~~c~v~~d~~~e~~~~~~~~ye 328 (477)
+|.. +.. +.....+||.++++.|.+.+..+ +... .+. ..++..|+.++.- ....+.
T Consensus 220 ~~~~~~evla-t~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~-----------~~~~i~ 287 (616)
T PRK05183 220 LSKGVFEVLA-TGGDSALGGDDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA-----------DSVEVS 287 (616)
T ss_pred eeCCEEEEEE-ecCCCCcCHHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC-----------ceEEEE
Confidence 2322 111 11224699999999999877653 2222 111 2244455544311 112233
Q ss_pred eCCCcEEEecceee-ccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHH
Q 011817 329 IAGEGWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKEL 407 (477)
Q Consensus 329 lpd~~~i~l~~er~-~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL 407 (477)
+++.. ..++.+.| ...+.++. .+.+.|.+++.+... . ..-...|+|+||+|++|++.++|.+.+
T Consensus 288 i~~~~-~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssriP~v~~~l~~~f 352 (616)
T PRK05183 288 VALWQ-GEITREQFNALIAPLVK---------RTLLACRRALRDAGV-E----ADEVKEVVMVGGSTRVPLVREAVGEFF 352 (616)
T ss_pred EecCC-CeEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----cccCCEEEEECCcccChHHHHHHHHHh
Confidence 32211 11332222 11222222 345556666665543 1 223478999999999999999999877
Q ss_pred HhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 408 RGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 408 ~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
... +....++..++-.||++.|..
T Consensus 353 g~~----------~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 353 GRT----------PLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred ccC----------cCcCCCchHHHHHHHHHHHHH
Confidence 421 122345667888999998763
No 38
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.04 E-value=2.2e-09 Score=111.27 Aligned_cols=173 Identities=17% Similarity=0.215 Sum_probs=110.8
Q ss_pred HHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHH
Q 011817 210 LKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (477)
Q Consensus 210 ~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L 284 (477)
..+.+.+.+-..|..-..+..+++++++++.. ...+|||+|+++|+++.+.+|.... ....++||+++|+.+
T Consensus 159 ~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~---~~~i~~GG~~it~~i 235 (371)
T TIGR01174 159 ILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY---TKVIPIGGNHITKDI 235 (371)
T ss_pred HHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE---EeeecchHHHHHHHH
Confidence 34444444323788888889999999988742 3569999999999999999998764 366899999999998
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCC---CcEEEecceeeccccccccccccccccCCH
Q 011817 285 RLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG---EGWFTLSKERFQTGEILFQPRMADVRTMGL 361 (477)
Q Consensus 285 ~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd---~~~i~l~~er~~~~E~LF~P~~~g~~~~~L 361 (477)
.+.+.. +...+|++|.+++....+.. .....++++. +....++.+.+ .+++ .| ....+
T Consensus 236 ~~~l~~------~~~~AE~lK~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~is~~~l--~~ii-~~-----~~~ei 296 (371)
T TIGR01174 236 AKALRT------PLEEAERIKIKYGCASIPLE-----GPDENIEIPSVGERPPRSLSRKEL--AEII-EA-----RAEEI 296 (371)
T ss_pred HHHhCC------CHHHHHHHHHHeeEecccCC-----CCCCEEEeccCCCCCCeEEcHHHH--HHHH-HH-----HHHHH
Confidence 775532 46789999999887542210 0111233321 11222222111 0110 00 01124
Q ss_pred HHHHH-HHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHh
Q 011817 362 DQAVA-LCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRG 409 (477)
Q Consensus 362 ~~~I~-~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~ 409 (477)
.+.|. +.+++.+. + ..+-+.|+||||+|++||+.+++.+.+..
T Consensus 297 ~~~i~~~~L~~~~~-~----~~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 297 LEIVKQKELRKSGF-K----EELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred HHHHHHHHHHhcCC-c----ccCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 45554 55555443 1 23434599999999999999999999863
No 39
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.99 E-value=4.2e-09 Score=110.96 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=122.5
Q ss_pred cCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011817 221 LNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF 295 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~ 295 (477)
.|..-..++.+|++++++... ...+|||+|+++|+++-+.+|.++.. ..+++||+++|+.+...|.-
T Consensus 178 aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~---~~i~~GG~~it~dIa~~l~i----- 249 (420)
T PRK09472 178 CGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT---KVIPYAGNVVTSDIAYAFGT----- 249 (420)
T ss_pred cCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE---eeeechHHHHHHHHHHHhCc-----
Confidence 788888888899999998753 35799999999999999999988754 67999999999999876642
Q ss_pred CcHHHHHHHHHhccccccchhHhhhcccccceEeCC--Cc-EEEecceeeccccccccccccccccCCHHHHHHHHHhhc
Q 011817 296 GSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG--EG-WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHC 372 (477)
Q Consensus 296 ~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd--~~-~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~ 372 (477)
+...+|++|.+++....+... ....+++++ +. ...++. ....|++-. ....|-+.|.+++..+
T Consensus 250 -~~~~AE~lK~~~g~~~~~~~~-----~~~~i~v~~~~~~~~~~i~~--~~l~~ii~~------r~~ei~~~i~~~l~~~ 315 (420)
T PRK09472 250 -PPSDAEAIKVRHGCALGSIVG-----KDESVEVPSVGGRPPRSLQR--QTLAEVIEP------RYTELLNLVNEEILQL 315 (420)
T ss_pred -CHHHHHHHHHhcceeccccCC-----CCceeEecCCCCCCCeEEcH--HHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 467899999887654322100 111233331 10 011111 111111111 0112445566666555
Q ss_pred CCCCccC---cccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeC----------CCCCcchhhhhhHHhh
Q 011817 373 HYAELSG---DDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIP----------PPYGADTAWFGAKLVG 439 (477)
Q Consensus 373 ~~~dl~~---r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~----------~~~~~~~aW~Ggsila 439 (477)
+. ++.. ...+.+.||||||+|+|||+.+.+++.+.. | +++-. ..+|.|++-+|..+++
T Consensus 316 ~~-~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~--~------vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~ 386 (420)
T PRK09472 316 QE-QLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT--Q------VRIGAPLNITGLTDYAQEPYYSTAVGLLHYG 386 (420)
T ss_pred HH-HHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC--C------eEEeCCcccCCChhhcCCcHHHHHHHHHHHh
Confidence 43 3310 134667899999999999999999988863 1 22221 1356899999988887
Q ss_pred c
Q 011817 440 N 440 (477)
Q Consensus 440 s 440 (477)
.
T Consensus 387 ~ 387 (420)
T PRK09472 387 K 387 (420)
T ss_pred h
Confidence 6
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.91 E-value=1.5e-08 Score=111.48 Aligned_cols=211 Identities=19% Similarity=0.258 Sum_probs=127.7
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC------cceEEEeecCceeEEEEEE
Q 011817 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 187 pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~------~tglVVDiG~~~T~v~PV~ 260 (477)
.++++.|...+ ...|+.+++.+-. .|++.+.++++|.+|+++++. .+-+|+|+|+++++++.+.
T Consensus 137 ~~vitVPa~~~------~~qr~~~~~Aa~~----agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~ 206 (602)
T PF00012_consen 137 DVVITVPAYFT------DEQRQALRDAAEL----AGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVE 206 (602)
T ss_dssp EEEEEE-TT--------HHHHHHHHHHHHH----TT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEE
T ss_pred cceeeechhhh------hhhhhcccccccc----cccccceeecccccccccccccccccccceeccccccceEeeeehh
Confidence 58999998764 4566665544433 788889999999999987753 4679999999999888764
Q ss_pred --eCeeeecccEEEEcccHHHHHHHHHHHHHhc-----CCCCC-c-------HHHHHHHHHhccccccchhHhhhccccc
Q 011817 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFG-S-------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (477)
Q Consensus 261 --dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~-~-------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (477)
+|..--........+||.++++.|.+.+..+ +.+.. + ...++.+|+.+..... ...
T Consensus 207 ~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------~~~ 277 (602)
T PF00012_consen 207 FSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDN---------TEI 277 (602)
T ss_dssp EETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSS---------SEE
T ss_pred cccccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccc---------ccc
Confidence 3432111122345799999999999877542 22221 1 1235566666543110 011
Q ss_pred ceE---eCC-Cc--EEEecceeec-cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccc
Q 011817 326 SLE---IAG-EG--WFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (477)
Q Consensus 326 ~ye---lpd-~~--~i~l~~er~~-~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG 398 (477)
.+. +.+ |. .+.|..+.|. ..+.+++ .+.++|.++++.+.. . ..=...|+|+||+|.+|.
T Consensus 278 ~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~-~----~~~i~~V~lvGG~sr~p~ 343 (602)
T PF00012_consen 278 TISIESLYDDGEDFSITITREEFEELCEPLLE---------RIIEPIEKALKDAGL-K----KEDIDSVLLVGGSSRIPY 343 (602)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHHHTHHHHH---------HTHHHHHHHHHHTT-------GGGESEEEEESGGGGSHH
T ss_pred ccccccccccccccccccccceeccccccccc---------ccccccccccccccc-c----ccccceeEEecCcccchh
Confidence 111 112 33 3444444332 2222322 356677777776654 2 223367999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 399 LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 399 ~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
+.++|.+.+.. ++....++..++-.||+++|.
T Consensus 344 v~~~l~~~f~~----------~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 344 VQEALKELFGK----------KISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp HHHHHHHHTTS----------EEB-SS-TTTHHHHHHHHHHH
T ss_pred hhhhhhhcccc----------ccccccccccccccccccchh
Confidence 99999876641 233344557788999999886
No 41
>PRK11678 putative chaperone; Provisional
Probab=98.82 E-value=3.6e-07 Score=96.94 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=61.6
Q ss_pred CCeEEEecCCCCCCccchHHhHHHH--HHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQL--KDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVP 258 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~--~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~P 258 (477)
..+||+.|..... ...+..+|+.. .....+. .|++.+.++++|++|++++|. .+-+|+|+|+++++++-
T Consensus 150 ~~~VItvPa~F~~-~~~~~~qr~a~~~l~~Aa~~---AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Sv 225 (450)
T PRK11678 150 TQAVIGRPVNFQG-LGGEEANRQAEGILERAAKR---AGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSM 225 (450)
T ss_pred CcEEEEECCcccc-CCcchhHHHHHHHHHHHHHH---cCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEE
Confidence 4689999875410 00112233221 1222333 899999999999999999873 56799999999999887
Q ss_pred EEeC-----------eeeecccEEEEcccHHHHHHHHH
Q 011817 259 ILHG-----------KVMRKVGVEVMGLGALKLTGYLR 285 (477)
Q Consensus 259 V~dG-----------~~l~~~~~~~~~vGG~~lt~~L~ 285 (477)
|-=+ .++.+ + -..+||++++..|.
T Consensus 226 v~~~~~~~~~~~r~~~vla~-~--G~~lGG~DfD~~L~ 260 (450)
T PRK11678 226 LLMGPSWRGRADRSASLLGH-S--GQRIGGNDLDIALA 260 (450)
T ss_pred EEecCcccccCCcceeEEec-C--CCCCChHHHHHHHH
Confidence 7421 12222 1 13699999999986
No 42
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.81 E-value=4.9e-08 Score=101.68 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=122.7
Q ss_pred HHHHHHHhhcCCCeEEEeccchHHHHhcC-----CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHH
Q 011817 212 DCFQQVLFDLNVPAVCAINQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRL 286 (477)
Q Consensus 212 e~l~e~lFE~~vpav~~~~~~vlalya~G-----~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~ 286 (477)
+.|.+++-..+..-..++-++++++.++= .-.+++||+|+++|+|+.+.+|.+... ..+|+||+++|+.+..
T Consensus 168 ~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~---~~ipvgG~~vT~DIa~ 244 (418)
T COG0849 168 ENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT---GVIPVGGDHVTKDIAK 244 (418)
T ss_pred HHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE---eeEeeCccHHHHHHHH
Confidence 33444332256666666667788877663 367899999999999999999998865 6699999999999998
Q ss_pred HHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCC--CcE-EEecceeeccccccccccccccccCCHHH
Q 011817 287 LMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG--EGW-FTLSKERFQTGEILFQPRMADVRTMGLDQ 363 (477)
Q Consensus 287 lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd--~~~-i~l~~er~~~~E~LF~P~~~g~~~~~L~~ 363 (477)
.|.- +.+.+|+||.+++....+.. .....++.|. +.. ..+. +....+++= ....-+-+
T Consensus 245 ~l~t------~~~~AE~iK~~~g~a~~~~~-----~~~~~i~v~~vg~~~~~~~t--~~~ls~II~------aR~~Ei~~ 305 (418)
T COG0849 245 GLKT------PFEEAERIKIKYGSALISLA-----DDEETIEVPSVGSDIPRQVT--RSELSEIIE------ARVEEILE 305 (418)
T ss_pred HhCC------CHHHHHHHHHHcCccccCcC-----CCcceEecccCCCcccchhh--HHHHHHHHH------hhHHHHHH
Confidence 8764 57899999999775443211 0111222221 100 1111 111111100 01112344
Q ss_pred HHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeC----------CCCCcchhhh
Q 011817 364 AVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIP----------PPYGADTAWF 433 (477)
Q Consensus 364 ~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~----------~~~~~~~aW~ 433 (477)
+|...|++... ...+.+.||||||++++||+.+-.++-+... +++-. ..+|.|++-+
T Consensus 306 lV~~~l~~~g~-----~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~--------vRig~P~~~~Gl~d~~~~p~fs~av 372 (418)
T COG0849 306 LVKAELRKSGL-----PNHLPGGVVLTGGGAQLPGIVELAERIFGRP--------VRLGVPLNIVGLTDIARNPAFSTAV 372 (418)
T ss_pred HHHHHHHHcCc-----cccCCCeEEEECchhcCccHHHHHHHhcCCc--------eEeCCCccccCchhhccCchhhhhH
Confidence 55555655543 2468889999999999999987666555422 22222 2247899999
Q ss_pred hhHHhhcC
Q 011817 434 GAKLVGNL 441 (477)
Q Consensus 434 Ggsilasl 441 (477)
|.-.++.+
T Consensus 373 Gl~~~~~~ 380 (418)
T COG0849 373 GLLLYGAL 380 (418)
T ss_pred HHHHHHhh
Confidence 98888775
No 43
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.79 E-value=4.1e-09 Score=76.05 Aligned_cols=47 Identities=26% Similarity=0.681 Sum_probs=40.8
Q ss_pred ccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhh
Q 011817 38 FDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (477)
Q Consensus 38 ~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (477)
.+.||.|++.+|++.|.+.|+++++.|||.|+.++.++.||+.+..|
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 36899999999999999999999999999999999999999987543
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.55 E-value=1.7e-06 Score=88.08 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=62.2
Q ss_pred cCCCeEEEeccchHHHHhc---------CCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhc
Q 011817 221 LNVPAVCAINQATLALYAA---------KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~---------G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~ 291 (477)
..+..+.+++|++.|++.. ...+.+|||||+.+|+++.+-++.+... .+...+.|...+.+.+++.+.++
T Consensus 137 i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~-~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 137 VTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQK-RSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred EEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEccc-ccCCchhHHHHHHHHHHHHHHhh
Confidence 4778899999999988764 2345699999999999988877777665 55567899999999999998754
Q ss_pred -CCC-CCcHHHHHH
Q 011817 292 -NIN-FGSLYTVRT 303 (477)
Q Consensus 292 -~~~-~~~~~~v~~ 303 (477)
+.+ +.+.+.+++
T Consensus 216 ~g~~~~~~~~~i~~ 229 (320)
T TIGR03739 216 IGTPAYRDIDRIDL 229 (320)
T ss_pred cCCCCccCHHHHHH
Confidence 444 233444444
No 45
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.2e-05 Score=87.89 Aligned_cols=214 Identities=19% Similarity=0.186 Sum_probs=121.1
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~ 260 (477)
+.++++.|.... ...|+..++. .+. .|++-+.++++|.+|+|++|. .+-+|+|+|+++++++-|-
T Consensus 121 ~~~VItVPayF~------d~qR~at~~A-~~i---aGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 121 TDAVITVPAYFN------DAQRQATKDA-ARI---AGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred ceEEEEeCCCCC------HHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEE
Confidence 478999998763 3455544433 333 899999999999999999984 4679999999999998874
Q ss_pred e--CeeeecccEEEEcccHHHHHHHHHHHHHhc----C-CCCCcH--------HHHHHHHHhccccccchhHhhhccccc
Q 011817 261 H--GKVMRKVGVEVMGLGALKLTGYLRLLMQQN----N-INFGSL--------YTVRTLKEKLCYVAADYKAELSKDTQA 325 (477)
Q Consensus 261 d--G~~l~~~~~~~~~vGG~~lt~~L~~lL~~~----~-~~~~~~--------~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (477)
= |..--..+.....+||++++..|...+..+ + .++... ..++..|+.++.... ...
T Consensus 191 ~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~---------~~i 261 (579)
T COG0443 191 IGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQ---------TSI 261 (579)
T ss_pred EcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccc---------ccc
Confidence 4 322111133445799999999888765432 2 333221 234444544432211 011
Q ss_pred ceEeCCCc---EEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHH
Q 011817 326 SLEIAGEG---WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAER 402 (477)
Q Consensus 326 ~yelpd~~---~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eR 402 (477)
.++.-++. ...|..+.| |.+..+.+ ..+.+.+..+++.... +..=..-|+++||++.||=+.+.
T Consensus 262 ~~~~~~~~~~~~~~ltR~~~---E~l~~dll-----~r~~~~~~~al~~a~l-----~~~~I~~VilvGGstriP~V~~~ 328 (579)
T COG0443 262 NLPSIGGDIDLLKELTRAKF---EELILDLL-----ERTIEPVEQALKDAGL-----EKSDIDLVILVGGSTRIPAVQEL 328 (579)
T ss_pred chhhccccchhhhhhhHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-----ChhhCceEEEccceeccHHHHHH
Confidence 11111111 111222111 11211110 0122222333333222 22333569999999999988888
Q ss_pred HHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 403 LEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 403 L~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+.+.+.. ......+|..++-+||.+.|..
T Consensus 329 v~~~f~~----------~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 329 VKEFFGK----------EPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred HHHHhCc----------cccccCCccHHHHHHHHHHHHh
Confidence 8877751 1222334556777888887664
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.44 E-value=2.9e-06 Score=87.10 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhhcCCCeEEEeccchH--HHHh-----c---C-Cc-ceEEEeecCceeEEEEEEeCeeeecccEEEEccc
Q 011817 209 QLKDCFQQVLFDLNVPAVCAINQATL--ALYA-----A---K-RT-SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG 276 (477)
Q Consensus 209 ~~~e~l~e~lFE~~vpav~~~~~~vl--alya-----~---G-~~-tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vG 276 (477)
+..+.+.+++-..|+.-..+..++++ -++. . . .. +.++||+|+++|+++-+.+|.+... +.+++|
T Consensus 143 ~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~---r~i~~G 219 (348)
T TIGR01175 143 EVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT---REVPFG 219 (348)
T ss_pred HHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE---EEeech
Confidence 34455555544455544444444444 3442 1 1 22 4899999999999999999998764 789999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeecccccccccccccc
Q 011817 277 ALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356 (477)
Q Consensus 277 G~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~ 356 (477)
|.++++.+.+.+.- +.+.++++|.+..+... +..+ +.+..+
T Consensus 220 ~~~i~~~i~~~~~~------~~~~Ae~~k~~~~~~~~-~~~~-------------------------~~~~~~------- 260 (348)
T TIGR01175 220 TRQLTSELSRAYGL------NPEEAGEAKQQGGLPLL-YDPE-------------------------VLRRFK------- 260 (348)
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHhcCCCCCc-hhHH-------------------------HHHHHH-------
Confidence 99999988765532 35778888876432210 0000 000000
Q ss_pred ccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHH
Q 011817 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELR 408 (477)
Q Consensus 357 ~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~ 408 (477)
..+..-|..+++-... .. .....+.|+||||++.++||.+.|++++.
T Consensus 261 --~~l~~eI~~~l~~~~~-~~--~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 261 --GELVDEIRRSLQFFTA-QS--GTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred --HHHHHHHHHHHHhhcC-CC--CCcccceEEEECccccchhHHHHHHHHHC
Confidence 1244445555544322 11 22346789999999999999999999997
No 47
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.42 E-value=1.7e-07 Score=67.71 Aligned_cols=46 Identities=35% Similarity=0.765 Sum_probs=40.4
Q ss_pred ccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHh
Q 011817 38 FDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQ 83 (477)
Q Consensus 38 ~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 83 (477)
|..||.|++..|+..+++.|+++++.|||.|++++.++.+|.++++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 5789999999999999999999999999999999999999999863
No 48
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=4.1e-07 Score=63.02 Aligned_cols=40 Identities=30% Similarity=0.699 Sum_probs=38.7
Q ss_pred CCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHH
Q 011817 41 IPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIF 80 (477)
Q Consensus 41 ~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 80 (477)
||.|++.+|+.++.+.|+++++.+||.||.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999974
No 49
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.26 E-value=5.1e-06 Score=85.36 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=100.7
Q ss_pred CCCeEEEeccchHHHHhcCC-------------cceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHH
Q 011817 222 NVPAVCAINQATLALYAAKR-------------TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLM 288 (477)
Q Consensus 222 ~vpav~~~~~~vlalya~G~-------------~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL 288 (477)
.+..+.+++|++.++|.... ...+|||||+.+|+++-+.++.+... .....+.|...+.+.+.+.+
T Consensus 152 ~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~-~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 152 NVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEE-ESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEccc-ccccccchHHHHHHHHHHHH
Confidence 45678899999999876532 24599999999999999988888776 55668999999999999999
Q ss_pred HhcC--CCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHH
Q 011817 289 QQNN--INFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVA 366 (477)
Q Consensus 289 ~~~~--~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~ 366 (477)
+.+. ..+ +.+.++++.++ ..+.+..++.+++.++...+.+ .+.+.+.
T Consensus 231 ~~~~~~~~~-~~~~ie~~l~~-----------------g~i~~~~~~~id~~~~~~~~~~-------------~~~~~i~ 279 (344)
T PRK13917 231 SKKEEGASI-TPYMLEKGLEY-----------------GACKLNQKTVIDFKDEFYKEQD-------------SVIDEVM 279 (344)
T ss_pred HhhCCCCCC-CHHHHHHHHHc-----------------CcEEeCCCceEehHHHHHHHHH-------------HHHHHHH
Confidence 5432 222 22344433221 0112221223443332111111 1222232
Q ss_pred HHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 367 LCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 367 ~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
+.++..=. +. .=+.+|+|+||+|.+ +.+.|++ .+|. +.+ .++++++.-.|.-.++.
T Consensus 280 ~~i~~~~~-~~----~~~d~IiL~GGGA~l--l~~~lk~----~f~~-----~~~--~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 280 SGFEIAVG-NI----NSFDRVIVTGGGANI--FFDSLSH----WYSD-----VEK--ADESQFANVRGYYKYGE 335 (344)
T ss_pred HHHHHHhc-cc----CCCCEEEEECCcHHH--HHHHHHH----HcCC-----eEE--cCChHHHHHHHHHHHHH
Confidence 22322111 21 234689999999976 4444444 3332 333 35678888888777775
No 50
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.11 E-value=1.3e-05 Score=82.13 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhcCC--CeEEEeccchHHHHhcC---------CcceEEEeecCceeEEEEEEeCeeeecccEEEEccc
Q 011817 208 RQLKDCFQQVLFDLNV--PAVCAINQATLALYAAK---------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG 276 (477)
Q Consensus 208 ~~~~e~l~e~lFE~~v--pav~~~~~~vlalya~G---------~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vG 276 (477)
+.+.+...+++-+.|. .++-+-.-+++-+|... ..+-++||||+..|+++-+.+|.++.. +.+++|
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~---R~i~~G 211 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS---RSIPIG 211 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE---EEES-S
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE---EEEeeC
Confidence 3445556665444444 44444344444444431 134589999999999999999998865 778999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeecccccccccccccc
Q 011817 277 ALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356 (477)
Q Consensus 277 G~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~ 356 (477)
|.++++.+.+.+.- +...++.+|..... ..+... .+-+..+
T Consensus 212 ~~~l~~~i~~~~~i------~~~~Ae~~k~~~~l-~~~~~~-------------------------~~l~~~~------- 252 (340)
T PF11104_consen 212 GNDLTEAIARELGI------DFEEAEELKRSGGL-PEEYDQ-------------------------DALRPFL------- 252 (340)
T ss_dssp HHHHHHHHHHHTT--------HHHHHHHHHHT-------HH-------------------------HHHHHHH-------
T ss_pred HHHHHHHHHHhcCC------CHHHHHHHHhcCCC-CcchHH-------------------------HHHHHHH-------
Confidence 99999988876432 34566666665221 101000 0000011
Q ss_pred ccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHH
Q 011817 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELR 408 (477)
Q Consensus 357 ~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~ 408 (477)
..|..-|..+++-... .. ...-.+.|+||||++.++||.+.|.++|.
T Consensus 253 --~~l~~EI~rsl~~y~~-~~--~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 253 --EELAREIRRSLDFYQS-QS--GGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp --HHHHHHHHHHHHHHHH-H--------SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHh-cC--CCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 1244455555553221 11 12345779999999999999999999997
No 51
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.02 E-value=1.1e-05 Score=74.83 Aligned_cols=149 Identities=23% Similarity=0.243 Sum_probs=101.5
Q ss_pred cCCCeEEEeccchHHHHhcCCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHH
Q 011817 221 LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYT 300 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~ 300 (477)
-|...++.+++|.++++-.+.+.|.|||+|.++|-|.-+-+|.++.. -.-+.||.+++-.|.- .+++ +.+.
T Consensus 119 AGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~---ADEpTGGtHmtLvlAG---~ygi---~~Ee 189 (277)
T COG4820 119 AGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS---ADEPTGGTHMTLVLAG---NYGI---SLEE 189 (277)
T ss_pred cCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe---ccCCCCceeEEEEEec---ccCc---CHhH
Confidence 78888999999999999999999999999999999999999999976 2358899888754431 2222 4567
Q ss_pred HHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCc
Q 011817 301 VRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGD 380 (477)
Q Consensus 301 v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r 380 (477)
+|++|...- + ++ |-|..- .|. -..+.+++..-|+.-++
T Consensus 190 AE~~Kr~~k----~-----------------~~------Eif~~v----~PV-----~eKMAeIv~~hie~~~i------ 227 (277)
T COG4820 190 AEQYKRGHK----K-----------------GE------EIFPVV----KPV-----YEKMAEIVARHIEGQGI------ 227 (277)
T ss_pred HHHhhhccc----c-----------------ch------hcccch----hHH-----HHHHHHHHHHHhccCCC------
Confidence 777775420 0 00 001000 011 01245556656655554
Q ss_pred ccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhh
Q 011817 381 DAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFG 434 (477)
Q Consensus 381 ~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~G 434 (477)
..+.|+||.++.||+++-++++|. .+|+.|..+.|..=+|
T Consensus 228 ----~dl~lvGGac~~~g~e~~Fe~~l~----------l~v~~P~~p~y~TPLg 267 (277)
T COG4820 228 ----TDLWLVGGACMQPGVEELFEKQLA----------LQVHLPQHPLYMTPLG 267 (277)
T ss_pred ----cceEEecccccCccHHHHHHHHhc----------cccccCCCcceechhh
Confidence 335899999999999999999994 3455554444444444
No 52
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.90 E-value=5.4e-05 Score=77.02 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=67.9
Q ss_pred HHHHHhhhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHh-------h-cCCCeEEEeccchHHHHhcC--
Q 011817 171 FFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLF-------D-LNVPAVCAINQATLALYAAK-- 240 (477)
Q Consensus 171 ~~~~i~~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lF-------E-~~vpav~~~~~~vlalya~G-- 240 (477)
..++.+.+-++.|.+-.+++..|.-..-+.. .+..++++......++. + +.+..+.+.+|++.|.|..-
T Consensus 81 av~haL~~~G~~~~~V~lvvGLPl~~y~~~~-~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHALLKAGLEPQDVDLVVGLPLSEYYDQD-KQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHHHHHS--SSEEEEEEEE-HHHHB-TT-SSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCeEEEecCCHHHHHhhh-hhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 3455555667777766677777753220000 01111222111111111 1 45789999999999998752
Q ss_pred ---CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcC
Q 011817 241 ---RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN 292 (477)
Q Consensus 241 ---~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~ 292 (477)
..+.+|||||+.+|+++-|.++...........++|-..+.+.+.+.|...+
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~ 214 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSAG 214 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--S
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHhc
Confidence 3578999999999999988776543331223347899999999999887743
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.72 E-value=0.00013 Score=75.47 Aligned_cols=288 Identities=15% Similarity=0.099 Sum_probs=146.4
Q ss_pred chhHHHHHHhhcCCCCcceeeeccccCCCCCccccC----CCCcccccccCCCCCCceEEEeCCcceEEEEEecCCCCCc
Q 011817 74 DNRLWIFFLQHQQEPWDSIFFGETTLGSGYPYQTLA----TGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSG 149 (477)
Q Consensus 74 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~VVID~GS~~~K~Gfage~~P~~ 149 (477)
-|.+-||..++.--|--++-|.| ..+.-++.|-. +-+..+++-....+..-.+=||.||.++|+-.-.+. ..
T Consensus 91 ~~~~~~~i~~~~~~p~~~~~~~~--~~~~~~l~tr~ea~~~~~~~~~~~~~~~~~g~~lGIDiGSTttK~Vl~dd~--~I 166 (404)
T TIGR03286 91 RNEVRRYIQENTNLPVVSYSFTE--RTTAGELLTRMEALTTIVRRKSLLARERQEGLTLGIDSGSTTTKAVVMEDN--EV 166 (404)
T ss_pred HHHHHHHHHhcCCCCEEEEeccc--CCchhHHHHHHHHHHHHHhhhhhhhhhccCCEEEEEEcChhheeeEEEcCC--eE
Confidence 45666665444333333343333 23333343333 223334433333444457899999999999766432 22
Q ss_pred ccccccccCCccChHHHHHHHHHHHHhhhcccCCCCCC-eEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEE
Q 011817 150 RTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQP-IVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCA 228 (477)
Q Consensus 150 ~~~s~~~~G~~~~Pi~~~l~~~~~~i~~~L~v~p~~~p-Vll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~ 228 (477)
+...+... ..| .+..+.+++.+++..+++..+-. +++|- .-|.. +-+. ++.+.+
T Consensus 167 i~~~~~~t---~~~-~~~a~~~l~~~l~~~Gl~~~di~~i~~TG------------yGR~~----i~~~---~~ad~i-- 221 (404)
T TIGR03286 167 IGTGWVPT---TKV-IESAEEAVERALEEAGVSLEDVEAIGTTG------------YGRFT----IGEH---FGADLI-- 221 (404)
T ss_pred EEEEEeec---ccH-HHHHHHHHHHHHHHcCCCccceeEEEeee------------ecHHH----Hhhh---cCCCce--
Confidence 22111111 223 34566666666777776554433 44432 23332 2122 333322
Q ss_pred eccchHH----HHhcC--CcceEEEeecCceeEEEEEEeCeeeecccEEEEcc--cHHHHHHHHHHHHHhcCCCCCcHHH
Q 011817 229 INQATLA----LYAAK--RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGL--GALKLTGYLRLLMQQNNINFGSLYT 300 (477)
Q Consensus 229 ~~~~vla----lya~G--~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~v--GG~~lt~~L~~lL~~~~~~~~~~~~ 300 (477)
+.+-.+. .|-.. .....|+|||.+-+-++-+-+|.+..- ..-...- +|+.|...-+.| +.++. ++
T Consensus 222 v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~dF-~MNdkCAAGTGrFLE~~A~~L----gi~ie--El 294 (404)
T TIGR03286 222 QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPDNF-TMGGICAGASGRFLEMTAKRL----GVDIT--EL 294 (404)
T ss_pred EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCceeeE-EEcCcccccCcHHHHHHHHHh----CCCHH--HH
Confidence 2222332 22222 246899999999999888878876532 1111112 356665544433 32221 11
Q ss_pred HHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeeccccccccccc------ccc----ccCCHHHHHHHHHh
Q 011817 301 VRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRM------ADV----RTMGLDQAVALCMD 370 (477)
Q Consensus 301 v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~------~g~----~~~~L~~~I~~sI~ 370 (477)
.+.-++. ....+.+ +.-+- .|..+. .|. -..||.++|.+-+.
T Consensus 295 ~~lA~~~---------------~~~pv~I--------sS~Ct-----VFaeSevIsll~~G~~~eDIaAGl~~SIa~rv~ 346 (404)
T TIGR03286 295 GKLALKG---------------MPEKVRM--------NSYCI-----VFGIQDLVTALAEGASPEDVAAAACHSVAEQVY 346 (404)
T ss_pred HHHHHhC---------------CCCCCCc--------cCccc-----ccccHhHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 1100000 0001111 11000 111100 010 12356666655554
Q ss_pred h-cCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 371 H-CHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 371 ~-~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
. .-. +..+-+.|+++||.++.+|+.+.|++.|. .+++.|+++++..-+||+++|+
T Consensus 347 ~~l~~-----~~~i~~~VvftGGva~N~gvv~ale~~Lg----------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 347 EQQLQ-----EIDVREPVILVGGTSLIEGLVKALGDLLG----------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHhh-----cCCCCCcEEEECChhhhHHHHHHHHHHhC----------CcEEECCcccHHHHHHHHHHhc
Confidence 2 111 23455679999999999999999999985 4566688899999999999985
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.60 E-value=0.0019 Score=64.47 Aligned_cols=66 Identities=26% Similarity=0.241 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEe-CCCCCcchhhhhhHHh
Q 011817 360 GLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVI-PPPYGADTAWFGAKLV 438 (477)
Q Consensus 360 ~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~-~~~~~~~~aW~Ggsil 438 (477)
||.+.|.+-+...-. |..+-..|+++||.+.-+|+.+.|+++|. .++. .++++++..-+||+++
T Consensus 221 Gl~~sia~rv~~~~~-----~~~i~~~v~~~GGva~N~~l~~al~~~Lg----------~~v~~~p~~p~~~GAlGAAL~ 285 (293)
T TIGR03192 221 AYCQAMAERVVSLLE-----RIGVEEGFFITGGIAKNPGVVKRIERILG----------IKAVDTKIDSQIAGALGAALF 285 (293)
T ss_pred HHHHHHHHHHHHHhc-----ccCCCCCEEEECcccccHHHHHHHHHHhC----------CCceeCCCCccHHHHHHHHHH
Confidence 455555544433221 33566789999999999999999999995 2333 3567889999999999
Q ss_pred hc
Q 011817 439 GN 440 (477)
Q Consensus 439 as 440 (477)
|.
T Consensus 286 A~ 287 (293)
T TIGR03192 286 GY 287 (293)
T ss_pred HH
Confidence 84
No 55
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.47 E-value=0.0058 Score=59.84 Aligned_cols=156 Identities=22% Similarity=0.194 Sum_probs=81.2
Q ss_pred ceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcc
Q 011817 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKD 322 (477)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~ 322 (477)
...|||||.+.|.++-+-+|.+..-.-......|+..+++.+.+.|. + +.+.++++|.+.-.
T Consensus 92 ~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~---~---~~~e~~~~~~~~~~------------ 153 (248)
T TIGR00241 92 ARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG---V---SVEELGSLAEKADR------------ 153 (248)
T ss_pred CCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC---C---CHHHHHHHHhcCCC------------
Confidence 34699999999999999999876321113345676666666665543 2 23344444433100
Q ss_pred cccceEeCCCcEEEecce-eeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHH
Q 011817 323 TQASLEIAGEGWFTLSKE-RFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAE 401 (477)
Q Consensus 323 ~~~~yelpd~~~i~l~~e-r~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~e 401 (477)
...+...-.+-...+ .....+.. .+. .-..++.+.+...+.+.-. .. ..-..|+++||.+..+++.+
T Consensus 154 ---~~~~~~~c~vf~~s~vi~~l~~g~-~~~---di~~~~~~~va~~i~~~~~-~~----~~~~~Vvl~GGva~n~~l~~ 221 (248)
T TIGR00241 154 ---KAKISSMCTVFAESELISLLAAGV-KKE---DILAGVYESIAERVAEMLQ-RL----KIEAPIVFTGGVSKNKGLVK 221 (248)
T ss_pred ---CCCcCCEeEEEechhHHHHHHCCC-CHH---HHHHHHHHHHHHHHHHHHh-hc----CCCCCEEEECccccCHHHHH
Confidence 000000000000000 00000000 000 0011233444333333211 11 11136999999999999999
Q ss_pred HHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 011817 402 RLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (477)
Q Consensus 402 RL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (477)
+|.+.|. .++..++++.+.+-+||+++
T Consensus 222 ~l~~~lg----------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 222 ALEKKLG----------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHhC----------CcEEcCCCccHHHHHHHHhC
Confidence 9999884 45666777778888998864
No 56
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.004 Score=67.99 Aligned_cols=94 Identities=24% Similarity=0.251 Sum_probs=68.1
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC----------cceEEEeecCceeEE
Q 011817 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR----------TSGIVVNIGFQVTSV 256 (477)
Q Consensus 187 pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~----------~tglVVDiG~~~T~v 256 (477)
-+++|.|++.. ++.|+.+.+ ..++ .|..-+.++++..+++..+|. +.-++-|+|.++|++
T Consensus 160 d~ViTVP~~F~------qaeR~all~-Aa~i---agl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~A 229 (902)
T KOG0104|consen 160 DMVITVPPFFN------QAERRALLQ-AAQI---AGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSA 229 (902)
T ss_pred heEEeCCcccC------HHHHHHHHH-HHHh---cCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeE
Confidence 47899988864 677776554 3444 789999999999999998873 346999999999999
Q ss_pred EEEEeCeeeec------ccEEE------EcccHHHHHHHHHHHHHh
Q 011817 257 VPILHGKVMRK------VGVEV------MGLGALKLTGYLRLLMQQ 290 (477)
Q Consensus 257 ~PV~dG~~l~~------~~~~~------~~vGG~~lt~~L~~lL~~ 290 (477)
+-|.--.+-.. ..++. ..+||..++..|++.|..
T Consensus 230 tivsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 230 TIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred EEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 98853221111 01222 247999999999998865
No 57
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0031 Score=63.16 Aligned_cols=117 Identities=22% Similarity=0.329 Sum_probs=77.6
Q ss_pred eEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhccc
Q 011817 244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDT 323 (477)
Q Consensus 244 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~ 323 (477)
..|+|||+..|.+.-+++|+++.. +..++||+.+++.+.+...- +...++++|.... ...||..+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~---r~~~~g~~Qlt~~i~r~~~L------~~~~a~~~k~~~~-~P~~y~~~vl--- 261 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT---REVPVGTDQLTQEIQRAYSL------TEEKAEEIKRGGT-LPTDYGSEVL--- 261 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE---eeccCcHHHHHHHHHHHhCC------ChhHhHHHHhCCC-CCCchhHHHH---
Confidence 469999999999999999999986 78999999999988876543 2355666665422 1112221110
Q ss_pred ccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCC-CCccCcccccCCeEEecCCCCccchHHH
Q 011817 324 QASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHY-AELSGDDAWFKTVILTGGSACLPGLAER 402 (477)
Q Consensus 324 ~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~-~dl~~r~~L~~NIvLtGG~S~ipG~~eR 402 (477)
+|. ...|.+-|..+|+-.-. ++. .-...|+|+||++.+.|+.+-
T Consensus 262 --------------------------~~f-----~~~l~~ei~Rslqfy~~~s~~----~~id~i~LaGggA~l~gL~~~ 306 (354)
T COG4972 262 --------------------------RPF-----LGELTQEIRRSLQFYLSQSEM----VDIDQILLAGGGASLEGLAAA 306 (354)
T ss_pred --------------------------HHH-----HHHHHHHHHHHHHHHHhcccc----ceeeEEEEecCCcchhhHHHH
Confidence 000 01244455555554211 011 233679999999999999999
Q ss_pred HHHHHH
Q 011817 403 LEKELR 408 (477)
Q Consensus 403 L~~EL~ 408 (477)
+.+.|.
T Consensus 307 i~qrl~ 312 (354)
T COG4972 307 IQQRLS 312 (354)
T ss_pred HHHHhC
Confidence 999986
No 58
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.01 Score=64.52 Aligned_cols=211 Identities=19% Similarity=0.235 Sum_probs=120.2
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcC-------CcceEEEeecCceeEEEEE
Q 011817 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK-------RTSGIVVNIGFQVTSVVPI 259 (477)
Q Consensus 187 pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G-------~~tglVVDiG~~~T~v~PV 259 (477)
.++++.|.-.. ...|+. .+....+ .|++.+-++++|.+++.++| ..+-+|.|+|++..+|.++
T Consensus 145 ~aviTVPa~F~------~~Qr~a-t~~A~~i---aGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l 214 (620)
T KOG0101|consen 145 KAVVTVPAYFN------DSQRAA-TKDAALI---AGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVL 214 (620)
T ss_pred eEEEEecCCcC------HHHHHH-HHHHHHh---cCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeE
Confidence 57788776542 233333 3333343 78899999999999999987 3455999999999988887
Q ss_pred E--eCeeeecccEEEEcccHHHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhccccccchhHhhhcccc
Q 011817 260 L--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQ 324 (477)
Q Consensus 260 ~--dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~-----~~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~ 324 (477)
. +|...-.+..-..++||.++++.|...+.. .+....+ ...++..|.++.-.. .
T Consensus 215 ~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~-----------~ 283 (620)
T KOG0101|consen 215 SLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSST-----------Q 283 (620)
T ss_pred EeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccc-----------c
Confidence 4 332111112334589999988887765432 2222211 123444555542211 1
Q ss_pred cceE---eCCCcEE--Eecceeec-cccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccc
Q 011817 325 ASLE---IAGEGWF--TLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (477)
Q Consensus 325 ~~ye---lpd~~~i--~l~~er~~-~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG 398 (477)
.+.+ |-+|..+ .+...||. .+.-||.- ..+.+..+++..-. | +.-...|||+||++.+|.
T Consensus 284 ~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~~-d----k~~i~~vvlVGGstriPk 349 (620)
T KOG0101|consen 284 ASIEIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAKL-D----KSDIDEVVLVGGSTRIPK 349 (620)
T ss_pred ceeccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhcc-C----ccCCceeEEecCcccchH
Confidence 1111 1222222 22333332 23445542 23344455554433 2 344567999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 399 LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 399 ~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+..-++.=+.. -.+..+-+|..++-+||++-|.+
T Consensus 350 ~~~ll~d~f~~---------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 350 VQKLLEDFFNG---------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred HHHHHHHHhcc---------cccccCCCHHHHHHhhHHHHhhh
Confidence 88777765532 11223334567788888887764
No 59
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.86 E-value=0.0043 Score=65.35 Aligned_cols=155 Identities=14% Similarity=0.191 Sum_probs=92.4
Q ss_pred ceEEEeCCcceEEEEEec----C-----CCCCcccc--cccccCCc-cChH-------HHHHHHHHHHHhhhcccCCCCC
Q 011817 126 GSVIIDGGSGYCKFGWSK----Y-----DCPSGRTA--TFLEFGNI-ESPM-------YSRLRHFFATIYSRMQVKPSTQ 186 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfag----e-----~~P~~~~~--s~~~~G~~-~~Pi-------~~~l~~~~~~i~~~L~v~p~~~ 186 (477)
-+|=||+||.+|+.=||. + ..||+.+- .++..+++ -.|+ .+.++.+.+.=|++-++.|++-
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID~~~i~~~V~~ey~~Agi~~~di 86 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEIDEAAIKELIEEEYQKAGIAPESI 86 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCccccHHHHHHHHHHHHHHcCCCHHHc
Confidence 468899999999998883 1 12554331 12222222 1233 2577888877788888887642
Q ss_pred ---CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEE-----EeccchHHHHhcC--------CcceEEEeec
Q 011817 187 ---PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVC-----AINQATLALYAAK--------RTSGIVVNIG 250 (477)
Q Consensus 187 ---pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~-----~~~~~vlalya~G--------~~tglVVDiG 250 (477)
-++++-.. ..++++.+.+-.. ...+-.+. +--+.+++.+|+| ....++||||
T Consensus 87 e~~ahIITg~~----------~~~~Nl~~~v~~~--~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIG 154 (475)
T PRK10719 87 DSGAVIITGET----------ARKENAREVVMAL--SGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIG 154 (475)
T ss_pred cccEEEEEech----------hHHHHHHHHHHHh--cccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeC
Confidence 34555332 2233333333321 01111111 1112233344443 3567999999
Q ss_pred CceeEEEEEEeCeeeecccEEEEcccHHHHHHH-----------HHHHHHhcCCCC
Q 011817 251 FQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY-----------LRLLMQQNNINF 295 (477)
Q Consensus 251 ~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~-----------L~~lL~~~~~~~ 295 (477)
+++|+++-+.+|.++.. ...++||+++|.. .+.+++..+..+
T Consensus 155 gGTT~iaVf~~G~l~~T---~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~~ 207 (475)
T PRK10719 155 GGTANYALFDAGKVIDT---ACLNVGGRLIETDSQGRVTYISPPGQMILDELGLAI 207 (475)
T ss_pred CCceEEEEEECCEEEEE---EEEecccceEEECCCCCEEEEChHHHHHHHHcCCCc
Confidence 99999999999999865 5689999988863 556677666654
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.66 E-value=0.082 Score=52.16 Aligned_cols=50 Identities=30% Similarity=0.364 Sum_probs=40.2
Q ss_pred CCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 385 KTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 385 ~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
.+|+++||.+.-+|+.+.|+++|... . . .+.+..++++++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~--~--~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K--M--AVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C--c--ceEecCCCcchHHHHHHHHHcC
Confidence 47999999999999999999999532 1 1 2556667788999999999875
No 61
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.54 E-value=0.07 Score=54.63 Aligned_cols=44 Identities=34% Similarity=0.529 Sum_probs=40.8
Q ss_pred eEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 387 VILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 387 IvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
||++||++...++.+-+++.|. .+|+.|+++++..-+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg----------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG----------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC----------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999999999986 6788999999999999999886
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.06 E-value=0.022 Score=60.19 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=96.2
Q ss_pred ceEEEeCCcceEEEEEec---CC------CCCcccc--cccccCCc-cChH-------HHHHHHHHHHHhhhcccCCCC-
Q 011817 126 GSVIIDGGSGYCKFGWSK---YD------CPSGRTA--TFLEFGNI-ESPM-------YSRLRHFFATIYSRMQVKPST- 185 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfag---e~------~P~~~~~--s~~~~G~~-~~Pi-------~~~l~~~~~~i~~~L~v~p~~- 185 (477)
.+|=||+||.+|+.=||. ++ .||+.+- .++..+++ ..|+ .+.++.+.+.=|++-++.|++
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID~~al~~iv~~eY~~Agi~p~~I 83 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEIDAEALKEIVEEEYRKAGITPEDI 83 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccCHHHHHHHHHHHHHHcCCCHHHC
Confidence 368899999999998885 22 2554332 12222222 1233 257888888778899998864
Q ss_pred --CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcC--------CcceEEEeecCceeE
Q 011817 186 --QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK--------RTSGIVVNIGFQVTS 255 (477)
Q Consensus 186 --~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G--------~~tglVVDiG~~~T~ 255 (477)
--|++|-...- +++-+.+.+.|-+..=+|=|..-----++++|..|+| ..+-+=||||.++|.
T Consensus 84 ~TGAVIITGETAr-------KeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN 156 (473)
T PF06277_consen 84 DTGAVIITGETAR-------KENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTN 156 (473)
T ss_pred ccccEEEecchhh-------hhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCcee
Confidence 46888843211 2222223333333200021111111125577777776 234456899999999
Q ss_pred EEEEEeCeeeecccEEEEcccHHHH-----------HHHHHHHHHhcCCCC
Q 011817 256 VVPILHGKVMRKVGVEVMGLGALKL-----------TGYLRLLMQQNNINF 295 (477)
Q Consensus 256 v~PV~dG~~l~~~~~~~~~vGG~~l-----------t~~L~~lL~~~~~~~ 295 (477)
++-+-+|.++.. ++ +++||+.+ ...++.++...+.+.
T Consensus 157 ~avf~~G~v~~T-~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 157 IAVFDNGEVIDT-AC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred EEEEECCEEEEE-EE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 999999999976 44 79999743 445667777776654
No 63
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.98 E-value=0.0046 Score=61.50 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=44.0
Q ss_pred ccccCCCHHHHHHHHhccCh-----hhhHhhhccchhhhhhccchhHHHHHHhh
Q 011817 36 GAFDQIPWDVLIQIVKLIGP-----KEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (477)
-.+.-||-||++.|..-.-+ .++.++++||+-|+-.++||.|||.++..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K 158 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK 158 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence 34678999999999987776 99999999999999999999999998874
No 64
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.65 E-value=0.082 Score=53.30 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=34.3
Q ss_pred cceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHH
Q 011817 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (477)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~ 285 (477)
.+++|||+|+++|.++-+.+|.+... ..+++|...+++.+.
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~~~---~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPGEG---VSLPLGCVRLTEQFF 165 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEeEE---EEEccceEEhHHhhC
Confidence 45799999999999999888887654 679999988887654
No 65
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.17 Score=52.12 Aligned_cols=90 Identities=22% Similarity=0.207 Sum_probs=58.1
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcC------CcceEEEeecCceeEEE--E
Q 011817 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK------RTSGIVVNIGFQVTSVV--P 258 (477)
Q Consensus 187 pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G------~~tglVVDiG~~~T~v~--P 258 (477)
..+++.|.... .+.|+..+..= -+ .+..-+-+++.|.+|+.++| ..+-+|.|+|.++-+|. .
T Consensus 174 ~AVvTvPAYFN------DAQrQATKDAG-tI---AgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLt 243 (663)
T KOG0100|consen 174 HAVVTVPAYFN------DAQRQATKDAG-TI---AGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLT 243 (663)
T ss_pred ceEEecchhcc------hHHHhhhcccc-ee---ccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEE
Confidence 34566665432 35665433221 11 56677889999999999887 46779999999987654 4
Q ss_pred EEeCee--eecccEEEEcccHHHHHHHHHHHH
Q 011817 259 ILHGKV--MRKVGVEVMGLGALKLTGYLRLLM 288 (477)
Q Consensus 259 V~dG~~--l~~~~~~~~~vGG~~lt~~L~~lL 288 (477)
|-+|.- +. +.-...+||.+.++.+.+.+
T Consensus 244 IdnGVFeVla--TnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 244 IDNGVFEVLA--TNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred EcCceEEEEe--cCCCcccCccchHHHHHHHH
Confidence 555642 21 22234689999888766544
No 66
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.86 E-value=0.23 Score=53.71 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=32.4
Q ss_pred cceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHH
Q 011817 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY 283 (477)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~ 283 (477)
.+++|||||+++|.++-+-+|.+... ...++|.-.+++.
T Consensus 132 ~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~ 170 (496)
T PRK11031 132 DQRLVVDIGGASTELVTGTGAQATSL---FSLSMGCVTWLER 170 (496)
T ss_pred CCEEEEEecCCeeeEEEecCCceeee---eEEeccchHHHHH
Confidence 35899999999999999888887643 6789999887754
No 67
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.49 E-value=0.3 Score=49.61 Aligned_cols=125 Identities=17% Similarity=0.273 Sum_probs=71.3
Q ss_pred EeCCcceEEEEEecCCCCCcccccccccCCccChHHH---HHHHHHHHHhhhcccCCCCCCeEEEecCCCCCCccchHHh
Q 011817 130 IDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYS---RLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKAS 206 (477)
Q Consensus 130 ID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~~Pi~~---~l~~~~~~i~~~L~v~p~~~pVll~ep~~~~~~t~~~~~~ 206 (477)
+|+|..++|+-...++ ..... +-....|+|. .|...+..+.+.++.. ..+-|.||-.+.. .. .+
T Consensus 3 ~DiGGA~~K~a~~~~~---g~~~~---v~~~~~plW~~~~~L~~~l~~~~~~~~~~-~~~avtMTgELaD---~f---~~ 69 (318)
T TIGR03123 3 IDIGGANTKAAELDED---GRIKE---VHQLYCPLWKGNDKLAETLKEISQDLSSA-DNVAVTMTGELAD---CF---ED 69 (318)
T ss_pred cccccceeeeEEecCC---CceeE---EEEecCcccCCchHHHHHHHHHHHhcCcc-ceEEEEeehhhhh---hh---cC
Confidence 7999999999755322 22211 1135678885 4555565555555321 4567888844321 11 23
Q ss_pred HHHHHHHHHHHHhh-cCCCeEEEeccc-hH---------------------HHHhcCCcceEEEeecCceeEEEEEEeCe
Q 011817 207 RRQLKDCFQQVLFD-LNVPAVCAINQA-TL---------------------ALYAAKRTSGIVVNIGFQVTSVVPILHGK 263 (477)
Q Consensus 207 R~~~~e~l~e~lFE-~~vpav~~~~~~-vl---------------------alya~G~~tglVVDiG~~~T~v~PV~dG~ 263 (477)
|+.=.+.+.+.+-+ |+.+-..+.... ++ +.++....++|.+|+|..+|+|+||.+|.
T Consensus 70 r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~ 149 (318)
T TIGR03123 70 KAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGE 149 (318)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCE
Confidence 33323334444444 755433332211 11 11222368899999999999999999999
Q ss_pred eeec
Q 011817 264 VMRK 267 (477)
Q Consensus 264 ~l~~ 267 (477)
+...
T Consensus 150 p~~~ 153 (318)
T TIGR03123 150 VAAK 153 (318)
T ss_pred eeee
Confidence 8653
No 68
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.19 E-value=6.9 Score=39.31 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=35.5
Q ss_pred cCCCeEEEeccchHHHHhc-------CCcceEEEeecCceeEEEEEEeCeeeec
Q 011817 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------G~~tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
+++| +++.+++-+++++- +..+.++|.+|.+. -..-|.+|.++..
T Consensus 97 ~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 97 VGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 8887 88889888887742 45788999999876 6667789998764
No 69
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.74 Score=50.59 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC------------cceEEEeecCce
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------------TSGIVVNIGFQV 253 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~------------~tglVVDiG~~~ 253 (477)
.+++|..|.+.+ ...|..+++.. ++ .|+.-+-++++..+++.++|. .+-+-||+||+.
T Consensus 138 ~DcvIavP~~FT------d~qRravldAA-~i---agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~ 207 (727)
T KOG0103|consen 138 SDCVIAVPSYFT------DSQRRAVLDAA-RI---AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSS 207 (727)
T ss_pred CCeeEecccccc------HHHHHHHHhHH-hh---cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEeccccc
Confidence 467888888764 45676666544 33 789999999999999999882 346889999999
Q ss_pred eEEEEEEe--Ce--eeecccEEEEcccHHHHHHHHHHHHHh
Q 011817 254 TSVVPILH--GK--VMRKVGVEVMGLGALKLTGYLRLLMQQ 290 (477)
Q Consensus 254 T~v~PV~d--G~--~l~~~~~~~~~vGG~~lt~~L~~lL~~ 290 (477)
++++.+.- |. ++.+ .-.-.+||++.++.|.+.+..
T Consensus 208 ~q~si~aF~kG~lkvl~t--a~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 208 YQVSIAAFTKGKLKVLAT--AFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred ceeeeeeeccCcceeeee--ecccccccchHHHHHHHHHHH
Confidence 98876643 33 2322 223479999999998887765
No 70
>PRK10854 exopolyphosphatase; Provisional
Probab=93.39 E-value=0.6 Score=50.73 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=31.5
Q ss_pred cceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHH
Q 011817 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY 283 (477)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~ 283 (477)
.+++|||||+++|.++-+-+|.+... ...++|.-.+++.
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~~---~S~~lG~vrl~e~ 175 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPILV---ESRRMGCVSFAQL 175 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeEe---EEEecceeeHHhh
Confidence 35899999999999999988876543 4568888877773
No 71
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.50 E-value=0.53 Score=46.48 Aligned_cols=66 Identities=24% Similarity=0.339 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|.+.|...+.+... . + ..|+++||......+.+.|.+.|.+..+.. .+..+..+.+.+..||.++|
T Consensus 206 la~~i~~~~~~~~~-~----~---~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRLGP-E----K---EPVVLSGGVFKNSPLVKALRDALKEKLPKV-----PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTCTC-C----C---CSEEEESGGGGCHHHHHHHGGGS-HHHHCC-----TCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-C----C---CeEEEECCccCchHHHHHHHHHHHHhcCCC-----ceEECCCCCccHHHHHHHhC
Confidence 55666666666653 1 1 129999999888777777766665544432 12333456889999999986
No 72
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.46 E-value=0.55 Score=45.84 Aligned_cols=123 Identities=23% Similarity=0.294 Sum_probs=69.5
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccccCCccChHHH---HHHHHHHHHhhhcccCCCCCCeEEEecCCCCCCccc
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYS---RLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTEN 202 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~~Pi~~---~l~~~~~~i~~~L~v~p~~~pVll~ep~~~~~~t~~ 202 (477)
..+=||+|..++|+.-+.-+. .. .--++-|||. +++..++.+-.+ -++.--.|+||-.+..
T Consensus 4 kilGiDIGGAntk~a~~DG~~--~~------~d~~YlPMWk~k~rL~~~Lkei~~k--~~~~~vgvvMTaELaD------ 67 (330)
T COG1548 4 KILGIDIGGANTKIASSDGDN--YK------IDHIYLPMWKKKDRLEETLKEIVHK--DNVDYVGVVMTAELAD------ 67 (330)
T ss_pred eEEEeeccCccchhhhccCCe--ee------eeEEEeccccchhHHHHHHHHHhcc--CCcceeEEEeeHHHHH------
Confidence 467899999999996531111 11 1124568884 566555443322 1222245777743321
Q ss_pred hHHhHHHHHHHHHHHHhh-cCCCeEEE-eccchHH---------HHhc------------CCcceEEEeecCceeEEEEE
Q 011817 203 AKASRRQLKDCFQQVLFD-LNVPAVCA-INQATLA---------LYAA------------KRTSGIVVNIGFQVTSVVPI 259 (477)
Q Consensus 203 ~~~~R~~~~e~l~e~lFE-~~vpav~~-~~~~vla---------lya~------------G~~tglVVDiG~~~T~v~PV 259 (477)
.-..|++=.|.+.+.+-. |++|--++ ++..+.+ .-++ -..+++.||+|..+|+|+||
T Consensus 68 ~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTTtDIIPi 147 (330)
T COG1548 68 AFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTTTDIIPI 147 (330)
T ss_pred HhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcccceEee
Confidence 123344444555555545 88885333 2222221 0011 14679999999999999999
Q ss_pred EeCee
Q 011817 260 LHGKV 264 (477)
Q Consensus 260 ~dG~~ 264 (477)
.+|..
T Consensus 148 ~~ge~ 152 (330)
T COG1548 148 KDGEA 152 (330)
T ss_pred cchhh
Confidence 99973
No 73
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.11 E-value=0.1 Score=54.01 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=35.5
Q ss_pred ccccCCCHHHHHHHHhcc-ChhhhHhhhccchhhhhhccc
Q 011817 36 GAFDQIPWDVLIQIVKLI-GPKEAAKLCVVSKSWRALVSD 74 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (477)
..-..||.|++..|.+.| ...|.+|+..+|+.||++|.-
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 345689999999999999 999999999999999999985
No 74
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.95 Score=48.52 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=62.2
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEE--EE
Q 011817 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVV--PI 259 (477)
Q Consensus 187 pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~--PV 259 (477)
..+++.|.+.. ...|+.. .-..++ .+-.-+-.++.|.+++.++|. .+-.|-|+|.+...|. -|
T Consensus 162 ~avvtvpAyfn------dsqRqaT-kdag~i---agl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei 231 (640)
T KOG0102|consen 162 NAVITVPAYFN------DSQRQAT-KDAGQI---AGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEI 231 (640)
T ss_pred heeeccHHHHh------HHHHHHh-Hhhhhh---ccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehh
Confidence 35677776642 3444433 334444 677777788999999999984 3457899998876654 45
Q ss_pred EeCeeeecccEEEEcccHHHHHHHHHHHHHh
Q 011817 260 LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQ 290 (477)
Q Consensus 260 ~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~ 290 (477)
.+|...-..+.-..-.||.+++.++..++-.
T Consensus 232 ~~gvfevksTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 232 EDGVFEVKSTNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred ccceeEEEeccCccccChhHHHHHHHHHHHH
Confidence 6676533323334568999999998887643
No 75
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.70 E-value=1.1 Score=48.19 Aligned_cols=61 Identities=25% Similarity=0.323 Sum_probs=42.1
Q ss_pred cCCCeEEEe---ccchHHHHhc----C-CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHH
Q 011817 221 LNVPAVCAI---NQATLALYAA----K-RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (477)
Q Consensus 221 ~~vpav~~~---~~~vlalya~----G-~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~ 285 (477)
+|++ +.++ .++-++.+|. + ...++|+|||+++|.++-+-+..+.. ....++|+-.+++.+.
T Consensus 101 ~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~---~~Sl~~G~v~lt~~~~ 169 (492)
T COG0248 101 LGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL---LISLPLGCVRLTERFF 169 (492)
T ss_pred hCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce---eEEeecceEEeehhhc
Confidence 6664 3333 3455555544 3 56789999999999999887666643 4668999877776554
No 76
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=91.69 E-value=0.3 Score=50.78 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=43.4
Q ss_pred cccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 382 AWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 382 ~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
.+-..|+++||.++-+|+.+.|+++|....+ +.+|+.++++++..-+||+++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~-----~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYG-----EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccC-----CCeEecCCCccHHHHHHHHHhC
Confidence 4557899999999999999999999964322 2467778889999999999875
No 77
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=88.77 E-value=1.9 Score=37.22 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=40.3
Q ss_pred EEEeecCceeEEEEEEeCeeeecccEEEEccc--------HHHHH--HHHHHHHHhcCCCCCcHHHHHHH-HHhccccc
Q 011817 245 IVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG--------ALKLT--GYLRLLMQQNNINFGSLYTVRTL-KEKLCYVA 312 (477)
Q Consensus 245 lVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vG--------G~~lt--~~L~~lL~~~~~~~~~~~~v~~i-Ke~~c~v~ 312 (477)
++||+|.+.|.++-..+|.... ...+++| |.+++ +.+.+-++. ....+|++ |.+...+.
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~---~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~------a~~~AE~~~k~~i~~v~ 71 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY---IRVLGVGEVPSKGIKGGHITDIEDISKAIKI------AIEEAERLAKCEIGSVY 71 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE---EEEES----------HHHHH--HHHHHHHT--------HHHHHHH-HHHH--S-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc---EEEEEEecccccccCCCEEEEHHHHHHHHHH------HHHHHHHHhCCeeeEEE
Confidence 6899999999999887776643 4778999 99999 888877765 35667777 77755443
No 78
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=87.27 E-value=1.7 Score=43.27 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=35.2
Q ss_pred CCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHH
Q 011817 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (477)
Q Consensus 240 G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~ 285 (477)
...+++|+|+|+++|.++-+-+|.+... ...++|...+++.+.
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~~~ 152 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVVFS---QSLPLGAVRLTERFF 152 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEEEE---EEES--HHHHHHHHS
T ss_pred ccCCEEEEEECCCceEEEEEECCeeeEe---eeeehHHHHHHHHHh
Confidence 5678999999999999999999998764 779999998887664
No 79
>PRK13317 pantothenate kinase; Provisional
Probab=86.15 E-value=1.1 Score=44.81 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHhhcCCCCccCcccccCCeEEec-CCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHH
Q 011817 359 MGLDQAVALCMDHCHYAELSGDDAWFKTVILTG-GSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKL 437 (477)
Q Consensus 359 ~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtG-G~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsi 437 (477)
.+|..+|.+.|..... -. .|..-.++|+++| |.+..|++.++|.+.+... +.+++.++++++..-+||++
T Consensus 200 asl~~~v~~~I~~lA~-~~-ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-------~~~~~~p~~~~~~gAlGAaL 270 (277)
T PRK13317 200 AGVIGLVGEVITTLSI-QA-AREKNIENIVYIGSTLTNNPLLQEIIESYTKLR-------NCTPIFLENGGYSGAIGALL 270 (277)
T ss_pred HHHHHHHHHHHHHHHH-HH-HHhcCCCeEEEECcccccCHHHHHHHHHHHhcC-------CceEEecCCCchhHHHHHHH
Confidence 3566666666655421 00 0222337999999 7999999999999877521 25677788889999999998
Q ss_pred hhc
Q 011817 438 VGN 440 (477)
Q Consensus 438 las 440 (477)
++.
T Consensus 271 ~a~ 273 (277)
T PRK13317 271 LAT 273 (277)
T ss_pred Hhh
Confidence 864
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.14 E-value=0.47 Score=47.53 Aligned_cols=45 Identities=31% Similarity=0.488 Sum_probs=42.5
Q ss_pred ccccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHH
Q 011817 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIF 80 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 80 (477)
..+|+||-+++++|-+.|--+|+.|.+.|||=|.-..+|.+||.-
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 448999999999999999999999999999999999999999963
No 81
>PRK13321 pantothenate kinase; Reviewed
Probab=85.06 E-value=8.7 Score=37.72 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.9
Q ss_pred EEEeCCcceEEEEEecCC
Q 011817 128 VIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (477)
+.||+|..++|+|...++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999988654
No 82
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=84.83 E-value=52 Score=34.04 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=25.0
Q ss_pred CeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCC
Q 011817 386 TVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPP 424 (477)
Q Consensus 386 NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~ 424 (477)
-||++||.+.-+-+.+++.+.+..+.| |.+++-
T Consensus 296 ~IV~gGGI~e~~~l~~~I~~~l~~~a~------v~~~pg 328 (351)
T TIGR02707 296 AIVLTGGLAYSKYFVSEIIKRVSFIAP------VLVYPG 328 (351)
T ss_pred EEEEcchhhcCHHHHHHHHHHHHhhCC------EEEeCC
Confidence 389999998877788888888877654 666644
No 83
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=82.68 E-value=8.7 Score=38.26 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=54.4
Q ss_pred cCCCeEEEeccchHHHHhcCCcce-----EEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCC
Q 011817 221 LNVPAVCAINQATLALYAAKRTSG-----IVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF 295 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~G~~tg-----lVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~ 295 (477)
++++.-.-..++-+|..|+-.|-| .|+|+|.++|+..-|-....+.. .+.-=+|+-+|-.+..-|. +
T Consensus 108 lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~---iHlAGAG~mVTmlI~sELG-----l 179 (332)
T PF08841_consen 108 LGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTA---IHLAGAGNMVTMLINSELG-----L 179 (332)
T ss_dssp HTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEE---EEEE-SHHHHHHHHHHHCT------
T ss_pred HCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEE---EEecCCchhhHHHHHHhhC-----C
Confidence 999988888899999998854433 78999999999887755444332 2344467788776665543 3
Q ss_pred CcHHHHHHHHHh
Q 011817 296 GSLYTVRTLKEK 307 (477)
Q Consensus 296 ~~~~~v~~iKe~ 307 (477)
.+.+++|+||+.
T Consensus 180 ~d~~lAE~IKky 191 (332)
T PF08841_consen 180 EDRELAEDIKKY 191 (332)
T ss_dssp S-HHHHHHHHHS
T ss_pred CCHHHHHHhhhc
Confidence 457899999985
No 84
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=81.99 E-value=1.8 Score=42.48 Aligned_cols=48 Identities=15% Similarity=0.392 Sum_probs=42.4
Q ss_pred cccCCCHHHHHHHHhccCh-hhhHhhhccchhhhhhccchhHHHHHHhh
Q 011817 37 AFDQIPWDVLIQIVKLIGP-KEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (477)
Q Consensus 37 ~~~~~p~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (477)
.|..||.+|++.||..|+- .|+.-++=+...-..++.|.++|+..++-
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqf 249 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQF 249 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999875 58888888888889999999999977665
No 85
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=81.76 E-value=1.5 Score=44.01 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=23.1
Q ss_pred HHH-hcCCcceEEEeecCceeEEEEEEeCeeee
Q 011817 235 ALY-AAKRTSGIVVNIGFQVTSVVPILHGKVMR 266 (477)
Q Consensus 235 aly-a~G~~tglVVDiG~~~T~v~PV~dG~~l~ 266 (477)
+++ ..|..++++||+|..+|+|.+|.||.+..
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 444 45788999999999999999999999864
No 86
>PRK03011 butyrate kinase; Provisional
Probab=81.57 E-value=70 Score=33.17 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=32.2
Q ss_pred CeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhH
Q 011817 386 TVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAK 436 (477)
Q Consensus 386 NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggs 436 (477)
-|||+||.+.-+-|.+++.+.+..+. ++.|........+.-.||.
T Consensus 298 ~IVlgGGI~~~~~l~~~I~~~l~~~~------pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 298 AIVLTGGLAYSKRLVERIKERVSFIA------PVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred EEEEeCccccCHHHHHHHHHHHHhhC------CeEEEeCCCHHHHHHHHHH
Confidence 48999999887778888888887653 3777776655555556643
No 87
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=79.98 E-value=21 Score=36.69 Aligned_cols=50 Identities=28% Similarity=0.487 Sum_probs=36.1
Q ss_pred eEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCC-CCCcchhhhhhHHhhc
Q 011817 387 VILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPP-PYGADTAWFGAKLVGN 440 (477)
Q Consensus 387 IvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~-~~~~~~aW~Ggsilas 440 (477)
|+|+|-.+.++.|.+-+...|...++.. +.-..+ ....-.+-.|++++|+
T Consensus 264 IilSGr~~~~~~~~~~l~~~l~~~~~~~----v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 264 IILSGRFSRIPEFRKKLEDRLEDYFPVK----VRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEeccccccHHHHHHHHHHHHhhcccc----eeecccccccchhhhhhHHHHhh
Confidence 8999999999999999999998877622 111111 1112346789999998
No 88
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=79.08 E-value=3.1 Score=35.34 Aligned_cols=50 Identities=12% Similarity=0.312 Sum_probs=42.8
Q ss_pred cccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhhcCCC
Q 011817 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEP 88 (477)
Q Consensus 37 ~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (477)
.+..+|.+++--|+.-++|..+.++=..|..-.. .++.||..|+.+|-+.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~--~tdeLW~~~i~rdFp~ 52 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIE--DTDELWKKLIKRDFPE 52 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcch--hhHHHHHHHHHhHCcC
Confidence 4567999999999999999999999998854433 4789999999998866
No 89
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=78.99 E-value=2 Score=43.60 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=44.3
Q ss_pred cccCCC----HHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhhc
Q 011817 37 AFDQIP----WDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQ 85 (477)
Q Consensus 37 ~~~~~p----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (477)
..+.|| ..+...|++-|.-.++|.--++||-|+.+..|+.+|.....+-
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~ 126 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERM 126 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 367899 8999999999999999999999999999999999999876653
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=76.39 E-value=1 Score=49.18 Aligned_cols=45 Identities=16% Similarity=0.532 Sum_probs=42.1
Q ss_pred cccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHH
Q 011817 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (477)
Q Consensus 37 ~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (477)
.+.-||.+...+|+++|.+++++++..+|++|+.+..|+..|..-
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 477899999999999999999999999999999999999999843
No 91
>PRK13324 pantothenate kinase; Reviewed
Probab=74.82 E-value=67 Score=31.70 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=15.4
Q ss_pred eEEEeCCcceEEEEEecC
Q 011817 127 SVIIDGGSGYCKFGWSKY 144 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage 144 (477)
-+.||+|..++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 378999999999998754
No 92
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=73.57 E-value=37 Score=32.08 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.2
Q ss_pred EEEeCCcceEEEEEecCC
Q 011817 128 VIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (477)
++||+|...+|+|+-.++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999999665
No 93
>PRK13318 pantothenate kinase; Reviewed
Probab=73.38 E-value=56 Score=31.95 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.2
Q ss_pred EEEeCCcceEEEEEecC
Q 011817 128 VIIDGGSGYCKFGWSKY 144 (477)
Q Consensus 128 VVID~GS~~~K~Gfage 144 (477)
+.||+|...+|+|+..+
T Consensus 3 L~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEECCCcEEEEEEEC
Confidence 78999999999998864
No 94
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=72.29 E-value=11 Score=37.57 Aligned_cols=158 Identities=22% Similarity=0.246 Sum_probs=83.5
Q ss_pred cceEEEeecCceeEEEEEEeCeeeecccEE---EEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHh-----cccccc
Q 011817 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVE---VMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEK-----LCYVAA 313 (477)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~~l~~~~~~---~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~-----~c~v~~ 313 (477)
-+-+.|.+|...|.++.|.+|+++...+-. .--.||-.++..+.-.|...-..|. |.. .+|++.
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~~~~fs--------K~~lf~gGa~~i~g 234 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANYLERFS--------KSLLFEGGAAYIAG 234 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHhhhhcc--------Hhheeccccccccc
Confidence 445889999999999999999999863211 1145666677776666553211111 111 112210
Q ss_pred chhHhhhcccccceEeCCCcEEEecceeeccccccccccc--ccccc-CCHHHHHHHHHhhcCCCCccCcccccCCeEEe
Q 011817 314 DYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRM--ADVRT-MGLDQAVALCMDHCHYAELSGDDAWFKTVILT 390 (477)
Q Consensus 314 d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~--~g~~~-~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLt 390 (477)
- ..||-+-.-.. .+.+. .-+.+.|.+.+...-+ +. +.+ -|+|+
T Consensus 235 v----------------------------~sp~ef~~~ake~enle~~~~l~e~vvK~v~tllp-s~--~pd---~iylS 280 (374)
T COG2441 235 V----------------------------DSPEEFVKLAKEDENLETYNALIEGVVKDVFTLLP-ST--YPD---AIYLS 280 (374)
T ss_pred C----------------------------CCHHHHHHHhhcccchHHHHHHHHHHHHHHHHhcc-cc--Ccc---eEEEe
Confidence 0 00110000000 00000 1255566666666544 43 222 39999
Q ss_pred cCCCCccchHHHHHHHHHhcCCCC-CCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 391 GGSACLPGLAERLEKELRGLLPSS-ISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 391 GG~S~ipG~~eRL~~EL~~l~p~~-~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
|-.+.||-|-.-+...|+..+... ....++....-...-.+-.||+++|+-
T Consensus 281 Grf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAna 332 (374)
T COG2441 281 GRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANA 332 (374)
T ss_pred eecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhh
Confidence 999999888777777776544332 111233333222233456799999874
No 95
>PF13013 F-box-like_2: F-box-like domain
Probab=70.86 E-value=6.2 Score=33.70 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=31.3
Q ss_pred CCcccccCCCHHHHHHHHhccChhhhHhhhccch--hhhhhc
Q 011817 33 SSLGAFDQIPWDVLIQIVKLIGPKEAAKLCVVSK--SWRALV 72 (477)
Q Consensus 33 ~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ 72 (477)
+++ .+..||.|++..|..+-.+.++..+.-+|+ +|+.-+
T Consensus 18 ~~l-tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 18 QSL-TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred ccc-chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 344 566699999999999999999988888887 555444
No 96
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=68.52 E-value=42 Score=32.76 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.4
Q ss_pred EEEeCCcceEEEEEecCC
Q 011817 128 VIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (477)
++||+|..++|+|+-.++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999977554
No 97
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=65.20 E-value=25 Score=35.92 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=77.1
Q ss_pred ceEEEeCCcceEEEEEec---------CCCCCcccccc-cccCCccChH------------HHHHHHHHHHHhhhcccCC
Q 011817 126 GSVIIDGGSGYCKFGWSK---------YDCPSGRTATF-LEFGNIESPM------------YSRLRHFFATIYSRMQVKP 183 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfag---------e~~P~~~~~s~-~~~G~~~~Pi------------~~~l~~~~~~i~~~L~v~p 183 (477)
.+|=||+|+.++.+=|+. ...||..+-.. + ..++|+ .+.++.+...=|...++.|
T Consensus 6 lSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi---~~rS~i~FTPv~~q~~id~~alk~~v~eeY~~AGi~p 82 (473)
T COG4819 6 LSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDI---SWRSPIFFTPVDKQGGIDEAALKKLVLEEYQAAGIAP 82 (473)
T ss_pred eeeeeeccCceeeeeeeeeEEeecccccccceEEEEecce---eeecceeeeeecccCCccHHHHHHHHHHHHHHcCCCh
Confidence 468899999999998874 23466544221 0 012222 2456766655567788887
Q ss_pred CC---CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcC-------Ccce-EEEeecCc
Q 011817 184 ST---QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK-------RTSG-IVVNIGFQ 252 (477)
Q Consensus 184 ~~---~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G-------~~tg-lVVDiG~~ 252 (477)
++ -.|+++-...- + ++.|. ....|-..+=+|-|..-----+++.|--++| +.++ +=+|||.+
T Consensus 83 esi~sGAvIITGEtAr---k---~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGG 155 (473)
T COG4819 83 ESIDSGAVIITGETAR---K---RNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGG 155 (473)
T ss_pred hccccccEEEeccccc---c---ccchH-HHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCC
Confidence 63 45788743211 0 11121 2222222100121111111112233333333 2233 45899999
Q ss_pred eeEEEEEEeCeeeecccEEEEcccHHHH
Q 011817 253 VTSVVPILHGKVMRKVGVEVMGLGALKL 280 (477)
Q Consensus 253 ~T~v~PV~dG~~l~~~~~~~~~vGG~~l 280 (477)
+|...-.-.|.+... ++ +++||+.+
T Consensus 156 TtN~slFD~Gkv~dT-aC--LdiGGRLi 180 (473)
T COG4819 156 TTNYSLFDAGKVSDT-AC--LDIGGRLI 180 (473)
T ss_pred ccceeeecccccccc-ee--eecCcEEE
Confidence 999999888999876 44 79999854
No 98
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=61.79 E-value=19 Score=38.52 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=50.5
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-c------CCCeEEEeccchHHH-----HhcCC------cceEE
Q 011817 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-L------NVPAVCAINQATLAL-----YAAKR------TSGIV 246 (477)
Q Consensus 185 ~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~------~vpav~~~~~~vlal-----ya~G~------~tglV 246 (477)
+.++.++++..-..+.+++...|+.+++++.+.+-+ = ....--+++.|-+.+ ++-|. ..-++
T Consensus 174 ~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~ 253 (463)
T TIGR01319 174 DIFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFIL 253 (463)
T ss_pred CceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEE
Confidence 345667766654456667777888877776655432 1 122223444443322 23332 34699
Q ss_pred EeecCceeEEEEEEeCeee
Q 011817 247 VNIGFQVTSVVPILHGKVM 265 (477)
Q Consensus 247 VDiG~~~T~v~PV~dG~~l 265 (477)
||||+.+|+|-.+.+|.+-
T Consensus 254 VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 254 IDIGGATTDVHSAAAGELS 272 (463)
T ss_pred EEcCccccchhhccCCCcc
Confidence 9999999999999999654
No 99
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=57.87 E-value=91 Score=30.70 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=16.0
Q ss_pred EEEeCCcceEEEEEecCC
Q 011817 128 VIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (477)
++||+|..+++.|+-.+.
T Consensus 3 L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 3 LLIDIGNTRIVFALYEGG 20 (251)
T ss_pred EEEEeCCCeEEEEEecCC
Confidence 789999999999998744
No 100
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=57.36 E-value=31 Score=37.43 Aligned_cols=99 Identities=18% Similarity=0.084 Sum_probs=61.5
Q ss_pred HHHhccChhhhHhhhccchhhhhhccchhHHHHHHh-----hcCCC---CcceeeeccccC---------------CCCC
Q 011817 48 QIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQ-----HQQEP---WDSIFFGETTLG---------------SGYP 104 (477)
Q Consensus 48 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~~~~~---~~~~~~~~~~~~---------------~~~~ 104 (477)
+++|++.+.+++|.+..|.|+|+||+.=.|=.+.|- -..++ =+-|++-|.--- -|-|
T Consensus 67 ~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP 146 (645)
T KOG0681|consen 67 LVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVP 146 (645)
T ss_pred cccchhhhhhhhhccCCCCCcCCccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCc
Confidence 689999999999999999999999998555554332 22222 234566554111 1233
Q ss_pred ccccC--CCCcccccccCCCCCCceEEEeCCcceEEEEEecCCCC
Q 011817 105 YQTLA--TGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCP 147 (477)
Q Consensus 105 ~~~~~--~~~~~~~~~~~~~~~~~~VVID~GS~~~K~Gfage~~P 147 (477)
.-+|. -=-||.+-|+. +.++..+||+.|...|-+=.--|..|
T Consensus 147 ~V~yGIDslfS~~hN~~~-~~~~~~liis~g~~~T~vipvldG~~ 190 (645)
T KOG0681|consen 147 KVAYGIDSLFSFYHNYGK-SSNKSGLIISMGHSATHVIPVLDGRL 190 (645)
T ss_pred ceeechhhHHHHhhccCc-ccCcceEEEecCCCcceeEEEecCch
Confidence 33333 23356665543 33347899999988776654444443
No 101
>PRK13320 pantothenate kinase; Reviewed
Probab=56.86 E-value=1.2e+02 Score=29.50 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.3
Q ss_pred eEEEeCCcceEEEEEecCC
Q 011817 127 SVIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~ 145 (477)
-+.||+|..++|.|+-.++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 4899999999999987653
No 102
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=56.80 E-value=69 Score=31.13 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=38.3
Q ss_pred CCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCC
Q 011817 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNI 293 (477)
Q Consensus 240 G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~ 293 (477)
|..+.+|+-+..+.|+|+...+.+---- -++++++=-.+...+.+.|+..+.
T Consensus 122 gA~nPvvLYvSGGNTQvIAYse~rYrIF--GETlDIAvGNClDRFAR~lklsN~ 173 (336)
T KOG2708|consen 122 GAQNPVVLYVSGGNTQVIAYSEKRYRIF--GETLDIAVGNCLDRFARVLKLSND 173 (336)
T ss_pred cCCCCEEEEEeCCceEEEEEccceeeee--cceehhhhhhhHHHHHHHhcCCCC
Confidence 5688899999999999999999875222 266777755666667777765543
No 103
>PF13941 MutL: MutL protein
Probab=55.78 E-value=24 Score=37.83 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=55.7
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cC------CCeEEEeccchHHH-----Hhc-CCcceEEEeecC
Q 011817 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LN------VPAVCAINQATLAL-----YAA-KRTSGIVVNIGF 251 (477)
Q Consensus 185 ~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~------vpav~~~~~~vlal-----ya~-G~~tglVVDiG~ 251 (477)
..+++++++..-..+.++....|+.+++.+.+..-+ =| .-.--+++.|-+.+ ++- +...-+|||||+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 457888887655556777777888887777666543 11 11223445544433 333 567789999999
Q ss_pred ceeEEEEEEeCeeeec
Q 011817 252 QVTSVVPILHGKVMRK 267 (477)
Q Consensus 252 ~~T~v~PV~dG~~l~~ 267 (477)
.+|+|-.|.+|.+-..
T Consensus 258 ATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIP 273 (457)
T ss_pred cccchhhhccCCcccc
Confidence 9999999997766543
No 104
>PRK09557 fructokinase; Reviewed
Probab=51.68 E-value=33 Score=34.15 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|..++.+.+.-+++ + .|||.||.+..+-|-+.|++.+++....... +++|..+.....+.-+||+.+.
T Consensus 232 La~~l~~l~~~ldP-~---------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~-~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 232 LAKSLAHVINILDP-D---------VIVLGGGMSNVDRLYPTLPALLKQYVFGGEC-ETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHhCC-C---------EEEEcCcccchHHHHHHHHHHHHHHhccccc-CCeEEEcccCCchhhhhhhHhh
Confidence 45556566655554 2 3788888787777888888888765432222 3556555544566777877653
No 105
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=50.37 E-value=37 Score=33.80 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|...|.+.+.-+++ + .|||.||.+..+-|.++|++.+.+....... ++.+........++-+||+.++
T Consensus 233 la~~l~n~~~~ldP-~---------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~-~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDP-H---------LVVLGGGLSNFDAIYEQLPKRLPRHLLPVAR-VPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCC-C---------EEEECCcccChHHHHHHHHHHHHHHhccccc-CceEEEcccCchHHHHhHHHHh
Confidence 55555555555555 3 3677777776677888888888764322211 3555555545567778988765
No 106
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=50.11 E-value=49 Score=32.56 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=35.9
Q ss_pred cCCCeEEEeccchHHHHhcC-------CcceEEEeecCceeEEEEEEeCeee
Q 011817 221 LNVPAVCAINQATLALYAAK-------RTSGIVVNIGFQVTSVVPILHGKVM 265 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~G-------~~tglVVDiG~~~T~v~PV~dG~~l 265 (477)
.+... .+.++..+|.+|+- ....+|||+|.+.|-..-|.+|++.
T Consensus 140 ~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 140 AGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred CCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 44444 78888888888773 4678999999999999999999874
No 107
>PRK13326 pantothenate kinase; Reviewed
Probab=47.41 E-value=2e+02 Score=28.41 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.8
Q ss_pred eEEEeCCcceEEEEEecCC
Q 011817 127 SVIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~ 145 (477)
-++||+|-.++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 4899999999999998765
No 108
>PRK09698 D-allose kinase; Provisional
Probab=44.85 E-value=58 Score=32.38 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccc-hHHHHHHHHHhcCC-CCCCCceEEeCCCCCcchhhhhhHHh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG-LAERLEKELRGLLP-SSISNGIRVIPPPYGADTAWFGAKLV 438 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG-~~eRL~~EL~~l~p-~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (477)
|...|.+.+.-+++ + -|||.||.+..+. +.++|.+++++.+. ......+++........+.-+||..+
T Consensus 224 la~~l~~li~~ldP-~---------~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~ 293 (302)
T PRK09698 224 LARAIATSINLFDP-D---------AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAIL 293 (302)
T ss_pred HHHHHHHHHHHhCC-C---------EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHH
Confidence 55566666655555 3 3677777766544 57888888887553 21122355555555566777898876
Q ss_pred hc
Q 011817 439 GN 440 (477)
Q Consensus 439 as 440 (477)
+-
T Consensus 294 ~~ 295 (302)
T PRK09698 294 AH 295 (302)
T ss_pred HH
Confidence 53
No 109
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=42.05 E-value=60 Score=32.11 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|...+.+.+.-+++ | .|||.|+.+..+-|-+++++.+++. +... .+.+..+.....++-+||+.++
T Consensus 221 la~~l~~l~~~~dp-e---------~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~--~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 221 IARLIADLKATLDC-Q---------CVVLGGSVGLAEGYLELVQAYLAQE-PAIY--HVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHhCC-C---------EEEEcCccccHHHHHHHHHHHHHhc-cccc--CCeEEECccCCchhhhhHHHHh
Confidence 55566666665655 3 3778777776677778888777764 2211 2555555555667778988765
No 110
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=37.23 E-value=29 Score=32.00 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=33.5
Q ss_pred cCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 384 FKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 384 ~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
.+.|+++||.++-+-+.+.+.+=+.. +|.+... ...+-+|++++|.
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~~--------~V~~~~~---~e~~a~GaA~~A~ 195 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLGR--------PVVRPEV---EEASALGAALLAA 195 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHTS--------EEEEESS---STHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhCC--------ceEeCCC---CchHHHHHHHHHH
Confidence 57799999999888888887776651 2444333 3467789999875
No 111
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=36.90 E-value=30 Score=28.48 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=23.5
Q ss_pred ccccCCCHHHHHHHHhccChhhhHhh
Q 011817 36 GAFDQIPWDVLIQIVKLIGPKEAAKL 61 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~~~~~~~~ 61 (477)
.-+..||.++...|++.|+..|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 46888999999999999999999765
No 112
>PRK12408 glucokinase; Provisional
Probab=36.15 E-value=1.9e+02 Score=29.52 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=30.5
Q ss_pred cCCCeEEEeccchHHHHhcC----------------C-cceEEEeecCceeEEEEEEeCe
Q 011817 221 LNVPAVCAINQATLALYAAK----------------R-TSGIVVNIGFQVTSVVPILHGK 263 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~G----------------~-~tglVVDiG~~~T~v~PV~dG~ 263 (477)
+++|-|.+.++.-+++|+-- . .+.++|-+|.+. =...|++|.
T Consensus 108 ~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGi-Gggivi~g~ 166 (336)
T PRK12408 108 LGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGL-GAALWIPNG 166 (336)
T ss_pred cCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcc-eEEEEEcCC
Confidence 89988999999999999751 1 356888777654 444456765
No 113
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=32.83 E-value=31 Score=35.84 Aligned_cols=25 Identities=44% Similarity=0.616 Sum_probs=20.6
Q ss_pred CCeEEecCCCCccchHHHHHHHHHh
Q 011817 385 KTVILTGGSACLPGLAERLEKELRG 409 (477)
Q Consensus 385 ~NIvLtGG~S~ipG~~eRL~~EL~~ 409 (477)
..|++|||++.-+-|.+||++.+..
T Consensus 286 ~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 286 DEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred ceEEEECCCcCCHHHHHHHHhhCCC
Confidence 4699999999999999999998853
No 114
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=31.42 E-value=2.9e+02 Score=28.00 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhhcccCCCC--CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhc--C
Q 011817 165 YSRLRHFFATIYSRMQVKPST--QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAA--K 240 (477)
Q Consensus 165 ~~~l~~~~~~i~~~L~v~p~~--~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~--G 240 (477)
-++++.+.+..+.+-+++++. +.|.+..+-.. .+...| ++ +.-+...|-.-+..+++..++..++++. |
T Consensus 46 ~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg~d-----~e~~~~-~l-v~~~R~~fps~ae~~~v~sDa~~sl~a~t~g 118 (336)
T KOG1794|consen 46 ASRIEDMIREAKEKAGWDKKGPLRSLGLGLSGTD-----QEDKNR-KL-VTEFRDKFPSVAENFYVTSDADGSLAAATPG 118 (336)
T ss_pred HHHHHHHHHHHHhhcCCCccCccceeeeecccCC-----chhHHH-HH-HHHHHHhccchhheeeeehhHHHHHhhcCCC
Confidence 457777777777777887765 46777655432 222232 22 2223322322345688999999998877 5
Q ss_pred CcceEEEeecCceeEEEEEEeCeee
Q 011817 241 RTSGIVVNIGFQVTSVVPILHGKVM 265 (477)
Q Consensus 241 ~~tglVVDiG~~~T~v~PV~dG~~l 265 (477)
...|+|+=.|.++..-.-.-||..-
T Consensus 119 ~~~GiVLiaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 119 GEGGIVLIAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred CCCcEEEEecCCceeEEECCCCCcc
Confidence 6899999999998887777777653
No 115
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=31.06 E-value=50 Score=33.01 Aligned_cols=70 Identities=14% Similarity=0.026 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHhhcCCCCccCcccccCCeEEecC-CCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHH
Q 011817 359 MGLDQAVALCMDHCHYAELSGDDAWFKTVILTGG-SACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKL 437 (477)
Q Consensus 359 ~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG-~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsi 437 (477)
.+|-++|.+.|-.+.. +..+..-.++|+++|| ....|.+.+++..-+.- +. .+++.+.+..|..-+||.+
T Consensus 208 aSLl~mV~~nIg~lA~--~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~--~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 208 ASLLGLIGNNIGQIAY--LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WS--KKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cC--ceEEEECCcchHHHhhhcc
Confidence 3566777776655442 1113445789999999 77889999999877752 11 5666666667888788764
No 116
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.61 E-value=73 Score=35.96 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCCeEEEeccchH----HHHhcCCcc--eEEEeecCceeEEEEEEeCeeee
Q 011817 222 NVPAVCAINQATL----ALYAAKRTS--GIVVNIGFQVTSVVPILHGKVMR 266 (477)
Q Consensus 222 ~vpav~~~~~~vl----alya~G~~t--glVVDiG~~~T~v~PV~dG~~l~ 266 (477)
+.|.-.+..-|.+ ++|-+|..+ ++++|+|..+|++.-|.+|.+-.
T Consensus 252 ~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred cCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 3444444444443 444446666 99999999999999999877643
No 117
>cd08817 CARD_RIG-I_2 Caspase activation and recruitment domain found in RIG-I, second repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), second repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction do
Probab=24.33 E-value=48 Score=26.95 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhhcCCCCccee
Q 011817 40 QIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIF 93 (477)
Q Consensus 40 ~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 93 (477)
.-|.|++.+|+..|.+.|--.....|..=.-+|.--.+=.-.|+.|.++|+-+.
T Consensus 19 v~P~~il~~l~~cL~~~EceeI~qi~~~kg~ma~aeKl~ecLlRSDKenWpK~L 72 (88)
T cd08817 19 IKPTDLISHLSTCLINRECEEIQQIESQKGPMAGAEKLVECLLRSDKENWPKTL 72 (88)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcccCcHHHH
Confidence 579999999999999999999999998888899999999999999999998654
No 118
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=24.13 E-value=89 Score=32.26 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=34.5
Q ss_pred CCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCC------CCcchhhhhhHHhhc
Q 011817 385 KTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPP------YGADTAWFGAKLVGN 440 (477)
Q Consensus 385 ~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~------~~~~~aW~Ggsilas 440 (477)
++++++||.+.-.-|+++|++..... +++++.++ +...-+|.|...+..
T Consensus 265 ~~lvv~GGVAaN~~LR~~l~~~~~~~-------~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 265 NEVLIVGGVGCNLRLQEMMQQMAKER-------GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CeEEEcCCHHHHHHHHHHHHHHHHHc-------CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 67999999999888888888766531 25666544 234567888766554
No 119
>PRK13322 pantothenate kinase; Reviewed
Probab=23.98 E-value=6.7e+02 Score=24.34 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=15.4
Q ss_pred EEEeCCcceEEEEEecC
Q 011817 128 VIIDGGSGYCKFGWSKY 144 (477)
Q Consensus 128 VVID~GS~~~K~Gfage 144 (477)
++||+|..++|.|...+
T Consensus 3 L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 3 LELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEeCCCcEEEEEEcC
Confidence 89999999999998864
No 120
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=23.36 E-value=48 Score=35.07 Aligned_cols=43 Identities=16% Similarity=0.481 Sum_probs=40.0
Q ss_pred cCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHH
Q 011817 39 DQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (477)
Q Consensus 39 ~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (477)
..||.++.+.|-++|-.+-++|-...|++|+-.|-|-.=|-+.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~i 115 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHI 115 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceee
Confidence 5799999999999999999999999999999999999888743
No 121
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=23.19 E-value=14 Score=37.55 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=46.5
Q ss_pred cccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhhcC
Q 011817 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQ 86 (477)
Q Consensus 37 ~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (477)
.++-+|-+++..+++++.+.++.+-+.+++--..+.+-..||+-|+.++.
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 46788999999999999999999999999999999999999999987766
No 122
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=21.70 E-value=95 Score=32.33 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.4
Q ss_pred CCeEEecCCCCccchHHHHHHHHH
Q 011817 385 KTVILTGGSACLPGLAERLEKELR 408 (477)
Q Consensus 385 ~NIvLtGG~S~ipG~~eRL~~EL~ 408 (477)
+.|++|||++.-|-|.+||++++.
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhcC
Confidence 358999999999999999998883
No 123
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=21.40 E-value=1e+02 Score=29.91 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=32.3
Q ss_pred CccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 395 CLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 395 ~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
..|+|.+++++-|..+++.. ..+|++.... .++=+||+|+|.+
T Consensus 198 ~~p~f~~~l~~~l~~L~~~~-~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 198 KYPNFRERLQEALDELLPEE-GCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp HSTTHHHHHHHHHHHHSTT--CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHhcccc-cceEEEEEec---CchHHHHHHHHHH
Confidence 58999999999999999875 2246666554 4678999998753
No 124
>PRK13331 pantothenate kinase; Reviewed
Probab=20.26 E-value=8.3e+02 Score=23.98 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=17.7
Q ss_pred CceEEEeCCcceEEEEEecCC
Q 011817 125 PGSVIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~ 145 (477)
+.-++||+|..++++|+-.++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECC
Confidence 356999999999999987654
Done!