Query 011817
Match_columns 477
No_of_seqs 254 out of 1859
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb0_A Actin-related protein 4 100.0 6.1E-70 2.1E-74 576.4 27.1 325 116-460 16-489 (498)
2 3dwl_A Actin-related protein 3 100.0 1.5E-69 5.2E-74 566.9 19.3 321 125-460 5-414 (427)
3 4fo0_A Actin-related protein 8 100.0 1.1E-62 3.9E-67 535.8 21.0 282 165-460 174-582 (593)
4 1k8k_B ARP2, actin-like protei 100.0 2.7E-63 9.2E-68 515.6 15.2 318 126-460 7-383 (394)
5 2fxu_A Alpha-actin-1, actin, a 100.0 1.5E-61 5.3E-66 499.1 26.3 319 125-460 5-367 (375)
6 1k8k_A ARP3, actin-like protei 100.0 1E-57 3.6E-62 476.7 26.7 318 125-460 5-405 (418)
7 4am6_A Actin-like protein ARP8 100.0 2.7E-48 9.3E-53 414.7 20.8 283 165-462 196-646 (655)
8 1jce_A ROD shape-determining p 100.0 1.3E-27 4.5E-32 242.5 18.4 280 126-446 4-331 (344)
9 2v7y_A Chaperone protein DNAK; 99.8 1.3E-18 4.5E-23 185.7 19.9 268 126-440 3-349 (509)
10 1dkg_D Molecular chaperone DNA 99.8 1.4E-18 4.9E-23 178.3 17.9 218 186-441 136-381 (383)
11 3h1q_A Ethanolamine utilizatio 99.8 3.1E-18 1E-22 167.6 17.0 235 126-439 29-272 (272)
12 3qfu_A 78 kDa glucose-regulate 99.7 6.5E-17 2.2E-21 166.2 20.5 214 185-441 153-392 (394)
13 3i33_A Heat shock-related 70 k 99.7 3.8E-16 1.3E-20 161.3 18.6 213 186-441 159-400 (404)
14 2kho_A Heat shock protein 70; 99.5 1.8E-13 6.3E-18 148.8 20.8 211 186-441 136-381 (605)
15 1yuw_A Heat shock cognate 71 k 99.5 5.1E-13 1.7E-17 143.9 22.1 211 186-440 140-378 (554)
16 3l2o_B F-box only protein 4; s 99.5 5.4E-15 1.8E-19 144.6 3.1 61 36-96 3-63 (312)
17 3d2f_A Heat shock protein homo 99.5 1.6E-12 5.4E-17 143.0 22.3 210 186-440 139-381 (675)
18 4gni_A Putative heat shock pro 99.4 5.5E-12 1.9E-16 130.4 19.2 215 185-441 150-400 (409)
19 4b9q_A Chaperone protein DNAK; 99.3 3.3E-11 1.1E-15 131.0 17.3 217 178-440 130-380 (605)
20 2ych_A Competence protein PILM 99.3 5.7E-11 1.9E-15 121.3 16.7 162 221-408 163-331 (377)
21 4a2a_A Cell division protein F 99.1 1E-09 3.5E-14 114.1 15.1 198 212-441 171-393 (419)
22 2fsj_A Hypothetical protein TA 98.9 3.4E-09 1.2E-13 107.4 11.6 99 186-291 120-240 (346)
23 2zgy_A Plasmid segregation pro 98.9 9.5E-09 3.3E-13 102.7 11.8 176 221-440 138-320 (320)
24 1fs1_A SKP2 F-BOX, cyclin A/CD 98.7 4.4E-09 1.5E-13 76.8 3.4 46 36-81 7-52 (53)
25 4apw_A ALP12; actin-like prote 98.5 5.2E-08 1.8E-12 98.0 5.8 171 222-441 148-324 (329)
26 3js6_A Uncharacterized PARM pr 98.5 1.1E-07 3.7E-12 96.7 6.6 168 223-441 154-336 (355)
27 1nbw_A Glycerol dehydratase re 98.3 7E-06 2.4E-10 86.3 13.4 74 230-312 392-470 (607)
28 2d0o_A DIOL dehydratase-reacti 98.2 6.5E-06 2.2E-10 86.3 11.8 74 230-312 390-468 (610)
29 2e31_A FBS1, F-box only protei 98.2 1.1E-06 3.8E-11 86.6 5.3 51 35-85 48-99 (297)
30 2ovr_B FBW7, F-BOX/WD repeat p 97.7 2.4E-05 8.4E-10 79.9 4.6 50 36-85 17-66 (445)
31 1p22_A F-BOX/WD-repeat protein 97.6 1.3E-05 4.6E-10 81.9 0.9 50 37-86 10-63 (435)
32 3v7d_B Cell division control p 97.5 3.4E-05 1.2E-09 78.9 3.6 51 36-86 13-64 (464)
33 4ehu_A Activator of 2-hydroxyi 97.5 0.00024 8.3E-09 68.8 9.4 49 382-440 205-253 (276)
34 1hux_A Activator of (R)-2-hydr 96.8 0.0036 1.2E-07 60.7 9.4 55 384-448 209-263 (270)
35 2ast_B S-phase kinase-associat 96.8 0.00046 1.6E-08 67.9 2.7 45 36-80 7-51 (336)
36 2qm1_A Glucokinase; alpha-beta 95.6 0.3 1E-05 47.7 15.7 70 361-440 250-320 (326)
37 1t6c_A Exopolyphosphatase; alp 95.5 0.08 2.7E-06 52.4 11.0 61 221-285 110-178 (315)
38 3vgl_A Glucokinase; ROK family 95.4 0.96 3.3E-05 44.3 18.7 70 361-440 240-311 (321)
39 3mdq_A Exopolyphosphatase; str 94.7 0.26 9E-06 48.6 12.4 60 221-284 102-170 (315)
40 2ews_A Pantothenate kinase; PA 94.6 0.066 2.3E-06 52.3 7.4 72 360-440 215-287 (287)
41 3hi0_A Putative exopolyphospha 94.5 0.13 4.5E-06 54.3 10.0 59 221-283 113-178 (508)
42 4htl_A Beta-glucoside kinase; 94.2 2.3 8E-05 41.0 17.7 66 361-440 225-290 (297)
43 3cet_A Conserved archaeal prot 94.0 0.098 3.3E-06 51.9 7.3 26 242-267 127-152 (334)
44 3cer_A Possible exopolyphospha 93.8 0.18 6.2E-06 50.4 8.9 62 221-284 115-191 (343)
45 1u6z_A Exopolyphosphatase; alp 93.6 0.43 1.5E-05 50.4 11.9 60 221-284 109-176 (513)
46 2p1m_B Transport inhibitor res 92.8 0.043 1.5E-06 57.9 2.6 41 37-79 5-46 (594)
47 3r8e_A Hypothetical sugar kina 92.7 0.93 3.2E-05 44.4 12.0 69 361-439 248-317 (321)
48 3vov_A Glucokinase, hexokinase 92.6 7.7 0.00026 37.4 18.6 67 361-439 225-293 (302)
49 1z05_A Transcriptional regulat 92.3 2.9 0.0001 42.6 15.6 45 221-267 208-259 (429)
50 2i7n_A Pantothenate kinase 1; 92.2 0.84 2.9E-05 45.8 11.0 75 359-439 283-358 (360)
51 1z6r_A MLC protein; transcript 91.6 6 0.0002 39.8 17.0 45 221-267 186-237 (406)
52 2gup_A ROK family protein; sug 91.1 1.4 4.7E-05 42.3 11.0 45 221-267 94-143 (292)
53 2yhw_A Bifunctional UDP-N-acet 90.8 8.8 0.0003 37.5 16.9 44 221-266 131-181 (343)
54 2ap1_A Putative regulator prot 90.4 5.3 0.00018 38.8 14.8 45 221-267 120-171 (327)
55 3aap_A Ectonucleoside triphosp 90.2 1.3 4.5E-05 44.3 10.2 36 242-278 140-177 (353)
56 3ogk_B Coronatine-insensitive 84.9 0.32 1.1E-05 51.2 2.0 32 40-71 15-47 (592)
57 2aa4_A Mannac kinase, putative 83.9 5 0.00017 38.1 9.9 66 361-439 221-286 (289)
58 3zx3_A Ectonucleoside triphosp 78.5 9.9 0.00034 39.2 10.3 57 207-263 131-202 (452)
59 2h3g_X Biosynthetic protein; p 75.6 23 0.00078 33.7 11.4 18 128-145 3-20 (268)
60 3cj1_A Ectonucleoside triphosp 75.4 14 0.00049 38.0 10.6 22 242-263 190-211 (456)
61 3bex_A Type III pantothenate k 73.2 34 0.0012 32.1 11.9 19 127-145 5-23 (249)
62 3djc_A Type III pantothenate k 68.4 36 0.0012 32.3 10.9 19 127-145 4-22 (266)
63 4db3_A Glcnac kinase, N-acetyl 64.0 9.7 0.00033 37.1 6.1 68 361-439 257-324 (327)
64 1zbs_A Hypothetical protein PG 63.7 94 0.0032 29.2 13.1 128 127-266 2-133 (291)
65 2ch5_A NAGK protein; transfera 56.7 1.4E+02 0.0048 28.5 13.2 127 127-264 8-143 (347)
66 3epq_A Putative fructokinase; 56.5 15 0.00053 35.3 6.0 69 361-439 212-287 (302)
67 2hoe_A N-acetylglucosamine kin 47.0 25 0.00086 34.8 5.9 67 361-439 302-369 (380)
68 1saz_A Probable butyrate kinas 46.6 1.2E+02 0.0042 29.9 11.0 50 386-441 298-348 (381)
69 3htv_A D-allose kinase, alloki 46.4 47 0.0016 31.9 7.7 61 387-447 243-305 (310)
70 1zc6_A Probable N-acetylglucos 45.9 1.7E+02 0.0059 27.5 11.7 125 127-266 13-146 (305)
71 4hfx_A Transcription elongatio 43.7 8.8 0.0003 30.9 1.5 48 41-90 13-60 (97)
72 2kwv_A RAD30 homolog B, DNA po 39.9 13 0.00043 25.6 1.6 19 36-54 19-37 (48)
73 2hoe_A N-acetylglucosamine kin 39.3 1.2E+02 0.0039 29.9 9.5 45 221-267 188-237 (380)
74 4db3_A Glcnac kinase, N-acetyl 36.7 2.8E+02 0.0097 26.3 11.8 45 221-267 120-171 (327)
75 2f9w_A Pantothenate kinase; CO 33.6 80 0.0027 30.0 6.8 17 127-143 25-41 (271)
76 2ch5_A NAGK protein; transfera 32.4 37 0.0013 32.8 4.4 75 361-440 245-323 (347)
77 3eno_A Putative O-sialoglycopr 28.8 73 0.0025 31.1 5.8 26 384-409 250-275 (334)
78 2yhx_A Hexokinase B; transfera 28.1 62 0.0021 33.2 5.3 53 386-441 386-442 (457)
79 1saz_A Probable butyrate kinas 27.7 65 0.0022 31.9 5.3 24 243-267 177-200 (381)
80 3qbx_A Anhydro-N-acetylmuramic 24.4 36 0.0012 34.1 2.6 23 385-407 285-307 (371)
81 2e2o_A Hexokinase; acetate and 23.6 51 0.0018 31.1 3.5 37 221-263 86-123 (299)
82 2ivn_A O-sialoglycoprotein end 23.2 74 0.0025 30.9 4.6 35 384-425 245-279 (330)
83 2q2r_A Glucokinase 1, putative 20.9 52 0.0018 32.4 3.0 46 221-267 127-206 (373)
No 1
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-70 Score=576.41 Aligned_cols=325 Identities=23% Similarity=0.423 Sum_probs=286.1
Q ss_pred ccccCCCCCCceEEEeCCcceEEEEEecCCCCCcccccccc-----------cCC-----------ccChH-------HH
Q 011817 116 HIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------FGN-----------IESPM-------YS 166 (477)
Q Consensus 116 ~~~~~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------~G~-----------~~~Pi-------~~ 166 (477)
.+||+++. ++||||+||++||+||+|++.|+.++|++++ +|+ +.+|+ |+
T Consensus 16 ~~yggde~--~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dwd 93 (498)
T 3qb0_A 16 QVYGGDEV--SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWD 93 (498)
T ss_dssp ---CCCCB--SCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGGGSCCTTEEEEESEETTEESCHH
T ss_pred cccCCCCC--CeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHHhcCcCceEEeccCcCCEEccHH
Confidence 47999988 8999999999999999999999999998763 343 23566 78
Q ss_pred HHHHHHHHHhh-hcccCCCCC-CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcc
Q 011817 167 RLRHFFATIYS-RMQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTS 243 (477)
Q Consensus 167 ~l~~~~~~i~~-~L~v~p~~~-pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~t 243 (477)
.++.+|+++|. .|+++|.+| ||||++|++++ +..|++ +.|+||| |++|+++++.+++|++||+|++|
T Consensus 94 ~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~------~~~Re~----~~eilFE~f~vpav~l~~~~vlalya~G~~t 163 (498)
T 3qb0_A 94 TAQEQWQWALQNELYLNSNSGIPALLTEPVWNS------TENRKK----SLEVLLEGMQFEACYLAPTSTCVSFAAGRPN 163 (498)
T ss_dssp HHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCC------HHHHHH----HHHHHHTTSCCSEEEEEEHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhhhCCCcccCCceEEEeCCCCc------HHHHHH----HHHHHHhhcCCCeEeecchHHHHHHHcCCCe
Confidence 99999999884 699999999 99999999875 566654 7777787 99999999999999999999999
Q ss_pred eEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcC------------------CCCC---------
Q 011817 244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN------------------INFG--------- 296 (477)
Q Consensus 244 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~------------------~~~~--------- 296 (477)
|+|||+|++.|+|+||++|+++.+ +++++++||+++|++|.++|+.++ ..+.
T Consensus 164 glVVDiG~g~T~vvPI~~G~~l~~-ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~ 242 (498)
T 3qb0_A 164 CLVVDIGHDTCSVSPIVDGMTLSK-STRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYA 242 (498)
T ss_dssp EEEEEECSSCEEEEEEETTEECGG-GCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHH
T ss_pred EEEEEcCCCcEEEEEEeCCEEccc-cceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHH
Confidence 999999999999999999999998 899999999999999999998653 2221
Q ss_pred -cHHHHHHHHHhccccccc--hhHhh---hcccccceEeCCCcEEEecce-eecccccccccccccc-------------
Q 011817 297 -SLYTVRTLKEKLCYVAAD--YKAEL---SKDTQASLEIAGEGWFTLSKE-RFQTGEILFQPRMADV------------- 356 (477)
Q Consensus 297 -~~~~v~~iKe~~c~v~~d--~~~e~---~~~~~~~yelpd~~~i~l~~e-r~~~~E~LF~P~~~g~------------- 356 (477)
..+++++|||++|||+.+ ++++. .....+.|+||||+.+.++.| ||++||.||+|+++|.
T Consensus 243 ~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~ 322 (498)
T 3qb0_A 243 NNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVK 322 (498)
T ss_dssp HHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCC
T ss_pred HHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccc
Confidence 123899999999999986 55542 223567899999999999999 9999999999997754
Q ss_pred -------------------------------------------------------------------ccCCHHHHHHHHH
Q 011817 357 -------------------------------------------------------------------RTMGLDQAVALCM 369 (477)
Q Consensus 357 -------------------------------------------------------------------~~~~L~~~I~~sI 369 (477)
+..||+++|.++|
T Consensus 323 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI 402 (498)
T 3qb0_A 323 TWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSI 402 (498)
T ss_dssp CCSCCCCCCCBCC-----------------------------------------------------CCSCCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHH
Confidence 5579999999999
Q ss_pred hhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCC---CCCcchhhhhhHHhhcCCCccc
Q 011817 370 DHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPP---PYGADTAWFGAKLVGNLSTFPG 446 (477)
Q Consensus 370 ~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~---~~~~~~aW~Ggsilasl~~f~~ 446 (477)
++|+. |+ |+.|++||||+||+|++|||.+||++||..++| .+ +++|+++ ++|++++|+||||||+|++|++
T Consensus 403 ~~cd~-d~--r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~--~i~v~~~~~~~er~~s~WiGgsilasl~~f~~ 476 (498)
T 3qb0_A 403 MSSDV-DL--RATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SL--KFRILTTGHTIERQYQSWLGGSILTSLGTFHQ 476 (498)
T ss_dssp HTSCT-TT--HHHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TS--CCCEECCSCTGGGGSHHHHHHHHHHTCHHHHH
T ss_pred HhCCH-HH--HHHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CC--eeEEEcCCCCCccCccEEcccEEEecCcchhc
Confidence 99998 88 899999999999999999999999999999999 44 4899987 6899999999999999999999
Q ss_pred cccccHHHHhhcCC
Q 011817 447 AWCATKKQFRRKSR 460 (477)
Q Consensus 447 ~w~ITk~eY~e~G~ 460 (477)
+| |||+||+|.|.
T Consensus 477 ~w-itk~EY~E~G~ 489 (498)
T 3qb0_A 477 LW-VGKKEYEEVGV 489 (498)
T ss_dssp TS-EEHHHHHTTCC
T ss_pred eE-EEHHHHhhhCc
Confidence 99 99999999996
No 2
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-69 Score=566.87 Aligned_cols=321 Identities=25% Similarity=0.445 Sum_probs=274.1
Q ss_pred CceEEEeCCcceEEEEEecCCCCCcccccccc---------------------------------------cCC------
Q 011817 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE---------------------------------------FGN------ 159 (477)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~---------------------------------------~G~------ 159 (477)
+++||||+||++||+||||++.|++++|++++ +|+
T Consensus 5 ~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~ 84 (427)
T 3dwl_A 5 NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKA 84 (427)
T ss_dssp CSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHHTH
T ss_pred CCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhhCc
Confidence 36899999999999999999999999988653 121
Q ss_pred -----ccChH-------HHHHHHHHHHHh-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCe
Q 011817 160 -----IESPM-------YSRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPA 225 (477)
Q Consensus 160 -----~~~Pi-------~~~l~~~~~~i~-~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpa 225 (477)
+.+|+ |+.++++|+++| +.|+++|.+|||||+||++++ +..|+ .+.|+||| |++|+
T Consensus 85 ~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~------~~~re----~~~ei~FE~~~~p~ 154 (427)
T 3dwl_A 85 SAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP------PENRE----NTAEIMFESFNCAG 154 (427)
T ss_dssp HHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCC------HHHHH----HHHHHHTTTTCCSE
T ss_pred ccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCC------HHHHH----HHHHHHHHhccCce
Confidence 34566 789999998876 689999999999999999875 66665 47778888 99999
Q ss_pred EEEeccchHHHHhcC--------CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCc
Q 011817 226 VCAINQATLALYAAK--------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS 297 (477)
Q Consensus 226 v~~~~~~vlalya~G--------~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~ 297 (477)
++++.+++||+|++| .+||+|||+|++.|+|+||++|+++.+ +++++++||+++|++|.++|+.++....+
T Consensus 155 v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~-~~~rl~~gG~~lt~~L~~lL~~~~~~~~~ 233 (427)
T 3dwl_A 155 LYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGS-SIKTMPLAGRDVTYFVQSLLRDRNEPDSS 233 (427)
T ss_dssp EEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHTTC--------
T ss_pred eeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehh-hheeccccHHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999 689999999999999999999999998 89999999999999999999988876556
Q ss_pred HHHHHHHHHhccccccchhHhhhcc-----cccceEe--CCCc--EEEecceeeccccccccccccccc-cCCHHHHHHH
Q 011817 298 LYTVRTLKEKLCYVAADYKAELSKD-----TQASLEI--AGEG--WFTLSKERFQTGEILFQPRMADVR-TMGLDQAVAL 367 (477)
Q Consensus 298 ~~~v~~iKe~~c~v~~d~~~e~~~~-----~~~~yel--pd~~--~i~l~~er~~~~E~LF~P~~~g~~-~~~L~~~I~~ 367 (477)
.+++++|||++|||+.|+++++.+. ..+.|++ |||+ .++++.|||++||+||+|+++|.+ ..+|+++|.+
T Consensus 234 ~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~ 313 (427)
T 3dwl_A 234 LKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDN 313 (427)
T ss_dssp CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHH
Confidence 6899999999999999988876532 2356778 8887 788999999999999999999988 4899999999
Q ss_pred HHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCC------------CCceEEeCCCCCcchhhhhh
Q 011817 368 CMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSI------------SNGIRVIPPPYGADTAWFGA 435 (477)
Q Consensus 368 sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~------------~~~v~v~~~~~~~~~aW~Gg 435 (477)
+|++||+ |+ |+.|++|||||||+|++|||.+||++||+.++|... ..+++|.++++|++++|+||
T Consensus 314 sI~~c~~-dl--r~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGG 390 (427)
T 3dwl_A 314 VVQSSPI-DV--RKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGG 390 (427)
T ss_dssp HHHTSCH-HH--HHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHH
T ss_pred HHHhCCH-HH--HHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCc
Confidence 9999999 88 899999999999999999999999999999874321 12489999999999999999
Q ss_pred HHhhcCCCccccccccHHHHhhcCC
Q 011817 436 KLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 436 silasl~~f~~~w~ITk~eY~e~G~ 460 (477)
||||++++|+++| |||+||+|+|.
T Consensus 391 Silasl~~f~~~w-itk~EYeE~G~ 414 (427)
T 3dwl_A 391 SLLAQTPEFGSYC-HTKADYEEYGA 414 (427)
T ss_dssp HHHHHSTTHHHHS-EEHHHHHHSCG
T ss_pred eeeccccchhhee-EEHHHHhhhCh
Confidence 9999999999999 99999999994
No 3
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-62 Score=535.77 Aligned_cols=282 Identities=17% Similarity=0.279 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHh-hhcccCCCC---CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhc
Q 011817 165 YSRLRHFFATIY-SRMQVKPST---QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA 239 (477)
Q Consensus 165 ~~~l~~~~~~i~-~~L~v~p~~---~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~ 239 (477)
|+.|+.+|+|+| ++|+++|++ |||||+||++++ +..|+ .++|+||| |+||+++++.+++||+||+
T Consensus 174 wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~------~~~re----~~~eilFE~f~~pa~~~~~~~vla~ya~ 243 (593)
T 4fo0_A 174 LADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYN------KQHVK----ELVNMILMKMGFSGIVVHQESVCATYGS 243 (593)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCC------HHHHH----HHHHHHHHTTCCSEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCC------HHHHH----HHHHHHHHhcCCCeEEeechHHHHHHHC
Confidence 678999999988 579998876 999999999875 55554 47777787 9999999999999999999
Q ss_pred CCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHhcccc
Q 011817 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG--------SLYTVRTLKEKLCYV 311 (477)
Q Consensus 240 G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~--------~~~~v~~iKe~~c~v 311 (477)
|++||||||+|++.|+|+||+||+++.+ ++.++++||++||++|+++|..+++.+. +.+++++|||++|||
T Consensus 244 G~~tglVVDiG~~~T~v~PV~dG~~l~~-~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v 322 (593)
T 4fo0_A 244 GLSSTCIVDVGDQKTSVCCVEDGVSHRN-TRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHL 322 (593)
T ss_dssp TCSEEEEEEECSSCEEEEEEESSCBCGG-GCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBC
T ss_pred CCCceEEEEeCCCceeeeeeECCEEehh-heEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhccc
Confidence 9999999999999999999999999999 8999999999999999999999987653 257899999999999
Q ss_pred ccchhHhhhc----------------------------------------------------------------------
Q 011817 312 AADYKAELSK---------------------------------------------------------------------- 321 (477)
Q Consensus 312 ~~d~~~e~~~---------------------------------------------------------------------- 321 (477)
+.|+..+...
T Consensus 323 ~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (593)
T 4fo0_A 323 DQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQE 402 (593)
T ss_dssp CTTCCSCEEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC-----------------------
T ss_pred ccchHHhhhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchh
Confidence 8764321000
Q ss_pred ------ccccceEeCCCcEEEecceeecccccccccccc--------------------------------ccccCCHHH
Q 011817 322 ------DTQASLEIAGEGWFTLSKERFQTGEILFQPRMA--------------------------------DVRTMGLDQ 363 (477)
Q Consensus 322 ------~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~--------------------------------g~~~~~L~~ 363 (477)
.....+++|++..+.++.+|+.+||.||+|... +.+..||++
T Consensus 403 ~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~ 482 (593)
T 4fo0_A 403 QSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDK 482 (593)
T ss_dssp --------------------------------------------------------------------CHHHHSCCCHHH
T ss_pred hhhhcccccccccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHH
Confidence 011346778888889999999999999998632 223569999
Q ss_pred HHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCC---CceEEeCCC---CCcchhhhhhHH
Q 011817 364 AVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSIS---NGIRVIPPP---YGADTAWFGAKL 437 (477)
Q Consensus 364 ~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~---~~v~v~~~~---~~~~~aW~Ggsi 437 (477)
+|.++|.+|+..|+ |+.|++|||||||+|++|||.+||++||..++|..++ .+|+|++++ +|++++|+||||
T Consensus 483 aI~~SI~~~~~~D~--r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSi 560 (593)
T 4fo0_A 483 AILHSIDCCSSDDT--KKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAV 560 (593)
T ss_dssp HHHHHHHTCSSHHH--HHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHH
T ss_pred HHHHHHHhCCcHHH--HHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHH
Confidence 99999999984266 8899999999999999999999999999999987532 358999887 789999999999
Q ss_pred hhcCCCccccccccHHHHhhcCC
Q 011817 438 VGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 438 lasl~~f~~~w~ITk~eY~e~G~ 460 (477)
||+|++|+++| |||+||+|.|.
T Consensus 561 lasL~~f~~~w-Itk~EYeE~G~ 582 (593)
T 4fo0_A 561 LACLDTTQELW-IYQREWQRFGV 582 (593)
T ss_dssp HHHCGGGGGTC-EEHHHHHHHTT
T ss_pred HhcCccHHHee-ECHHHHHhhCc
Confidence 99999999999 99999999995
No 4
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=2.7e-63 Score=515.62 Aligned_cols=318 Identities=25% Similarity=0.500 Sum_probs=154.9
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccc-------------------cCC----------ccChH-------HHHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------FGN----------IESPM-------YSRLR 169 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-------------------~G~----------~~~Pi-------~~~l~ 169 (477)
++||||+||++||+||+|++.|+.++|++++ +|+ +.+|+ |+.++
T Consensus 7 ~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dwd~~e 86 (394)
T 1k8k_B 7 KVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMK 86 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEecHHHHH
Confidence 6899999999999999999999998887642 232 34576 56889
Q ss_pred HHHHHHh--hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEE
Q 011817 170 HFFATIY--SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIV 246 (477)
Q Consensus 170 ~~~~~i~--~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglV 246 (477)
.+|+++| +.|+++|.++||++++|++++ +..|++ +.|++|| |++|++++++++++|+|++|.++|+|
T Consensus 87 ~i~~~~~~~~~L~~~~~~~~vllt~p~~~~------~~~r~~----~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lV 156 (394)
T 1k8k_B 87 HLWDYTFGPEKLNIDTRNCKILLTEPPMNP------TKNREK----IVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVV 156 (394)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred HHHHHHhcccccCcCCCCCcEEEEECCCCC------HHHHHH----HHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEE
Confidence 9999988 689999999999999998864 555654 6666777 99999999999999999999999999
Q ss_pred EeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchhHhhhc--
Q 011817 247 VNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSK-- 321 (477)
Q Consensus 247 VDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~-- 321 (477)
||+|+++|+|+||++|+++.+ ++.++++||+++|++|.++|+.+++++. +.+.+++||+++||++.|+++++..
T Consensus 157 VDiG~g~T~v~pv~~G~~~~~-~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~ 235 (394)
T 1k8k_B 157 VDSGDGVTHICPVYEGFSLPH-LTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLAL 235 (394)
T ss_dssp EEECSSCEEEECEETTEECST-TCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHH
T ss_pred EEcCCCceEeeeeECCEEccc-ceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhc
Confidence 999999999999999999998 7889999999999999999999887774 5789999999999999888766532
Q ss_pred ---ccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccc
Q 011817 322 ---DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (477)
Q Consensus 322 ---~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG 398 (477)
.....|++|||+.+.++.|||.+||+||+|+++|.+..+|+++|.++|.+|++ |+ |+.+++|||||||+|++||
T Consensus 236 ~~~~~~~~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~-d~--r~~l~~nIvLtGG~s~~~G 312 (394)
T 1k8k_B 236 ETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADI-DT--RSEFYKHIVLSGGSTMYPG 312 (394)
T ss_dssp HCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCT-TT--HHHHHTTCEEESGGGCSTT
T ss_pred cCCcCceEEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCH-HH--HHHHHhCEEEeCccccccc
Confidence 13457999999999999999999999999999999999999999999999998 87 7899999999999999999
Q ss_pred hHHHHHHHHHhcC-----------CCCCCCceEEeCCCCCcchhhhhhHHhhcCCCcc-ccccccHHHHhhcCC
Q 011817 399 LAERLEKELRGLL-----------PSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFP-GAWCATKKQFRRKSR 460 (477)
Q Consensus 399 ~~eRL~~EL~~l~-----------p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~-~~w~ITk~eY~e~G~ 460 (477)
|.+||++||..++ |..++ ++|.++++|.+++|+||||+|++++|+ ++| |||+||+|+|.
T Consensus 313 ~~~rl~~el~~~~~~~~~~~~~~~p~~~~--v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~-itk~eY~e~G~ 383 (394)
T 1k8k_B 313 LPSRLERELKQLYLERVLKGDVEKLSKFK--IRIEDPPRRKHMVFLGGAVLADIMKDKDNFW-MTRQEYQEKGV 383 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCTTCCCC--C------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhcccccCCCCceE--EEEecCCCcceeEEhhhHHhhCCcCCcccee-ecHHHHhhhCH
Confidence 9999999999877 65543 888888999999999999999999999 999 99999999995
No 5
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=1.5e-61 Score=499.14 Aligned_cols=319 Identities=30% Similarity=0.603 Sum_probs=286.8
Q ss_pred CceEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccChH-------HHHHHH
Q 011817 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLRH 170 (477)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi-------~~~l~~ 170 (477)
.++||||+||+++|+||+|++.|+.++|++++ +|+ +.+|+ |+.++.
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~~e~ 84 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEK 84 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHHHH
T ss_pred CceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHHHHH
Confidence 37899999999999999999999999988653 121 24566 789999
Q ss_pred HHHHHh-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEEe
Q 011817 171 FFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVN 248 (477)
Q Consensus 171 ~~~~i~-~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVVD 248 (477)
+|+++| +.|+++|.++|+++++|++++ ...|++ +.+++|| +|+|++++++++++|+|++|.++|+|||
T Consensus 85 i~~~~~~~~L~~~~~~~~vvit~p~~~~------~~~r~~----~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvD 154 (375)
T 2fxu_A 85 IWHHTFYNELRVAPEEHPTLLTEAPLNP------KANREK----MTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLD 154 (375)
T ss_dssp HHHHHHHTTSCCCGGGSCEEEEECTTCC------HHHHHH----HHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHhcCCCCcCCcEEEEeCCCCc------HHHHHH----HHHHHHHhcCcceEEEccchheeeeecCCCeEEEEE
Confidence 999998 689999999999999999875 566655 6666677 9999999999999999999999999999
Q ss_pred ecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchhHhhhcc---
Q 011817 249 IGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD--- 322 (477)
Q Consensus 249 iG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~--- 322 (477)
+|+++|+|+||++|+++.+ +..++++||+++|++|.++|..++.++. +.+.+++||+++||++.++++++.+.
T Consensus 155 iG~gtt~v~~v~~G~~~~~-~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~ 233 (375)
T 2fxu_A 155 SGDGVTHNVPIYEGYALPH-AIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASS 233 (375)
T ss_dssp ECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHC
T ss_pred cCCCceEEeEeECCEEecc-ceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhccc
Confidence 9999999999999999988 7889999999999999999999887774 45789999999999998887765431
Q ss_pred --cccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchH
Q 011817 323 --TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400 (477)
Q Consensus 323 --~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~ 400 (477)
....|++|||+.+.++.|||.+||.||+|.+++.+..+|+++|.++|++|++ |+ |+.+++|||||||+|++|||.
T Consensus 234 ~~~~~~~~lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~-~~--~~~l~~~IvLtGG~s~~pG~~ 310 (375)
T 2fxu_A 234 SSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDI-DI--RKDLYANNVMSGGTTMYPGIA 310 (375)
T ss_dssp STTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCH-HH--HHHHHTCEEEESGGGCSTTHH
T ss_pred CccCeEEECCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCH-HH--HHHHHhCcEeeCCCCCCccHH
Confidence 3567999999999999999999999999999999999999999999999998 87 789999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccccccHHHHhhcCC
Q 011817 401 ERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 401 eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~ 460 (477)
+||++||..+.|...+ ++|..+++|.+++|+||+++|++++|+++| |||+||+|+|.
T Consensus 311 ~rl~~el~~~~p~~~~--v~v~~~~~p~~~~w~G~si~a~l~~f~~~~-itk~ey~e~G~ 367 (375)
T 2fxu_A 311 DRMQKEITALAPSTMK--IKIIAPPERKYSVWIGGSILASLSTFQQMW-ITKQEYDEAGP 367 (375)
T ss_dssp HHHHHHHHHHSCTTCC--CCEECCTTTTSHHHHHHHHHHHCGGGGGGS-EEHHHHHHHCG
T ss_pred HHHHHHHHHhCCCCee--EEEEcCCCCCccEEcchHHhhCcccHhhce-eeHHHHhhhCh
Confidence 9999999999887664 888888999999999999999999999999 99999999995
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=1e-57 Score=476.67 Aligned_cols=318 Identities=23% Similarity=0.446 Sum_probs=278.4
Q ss_pred CceEEEeCCcceEEEEEecCCCCCcccccccc-------------------------cCC---------ccChH------
Q 011817 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------------FGN---------IESPM------ 164 (477)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-------------------------~G~---------~~~Pi------ 164 (477)
+++||||+||+++|+||+|++.|+.++|++++ +|+ +.+|+
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~pi~~G~i~ 84 (418)
T 1k8k_A 5 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVE 84 (418)
T ss_dssp SCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTTSEEECCEETTEES
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCCCEEeccccCCEEC
Confidence 36899999999999999999999998887543 221 23566
Q ss_pred -HHHHHHHHHHHh-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHh---
Q 011817 165 -YSRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYA--- 238 (477)
Q Consensus 165 -~~~l~~~~~~i~-~~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya--- 238 (477)
|+.++.+|+++| +.|+++|+++++++++|++++ ...|++ +.+++|| +|++++++++++++|+|+
T Consensus 85 d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~------~~~r~~----~~e~~fe~~g~~~~~l~~ep~aa~~a~~~ 154 (418)
T 1k8k_A 85 DWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNT------PENREY----TAEIMFESFNVPGLYIAVQAVLALAASWT 154 (418)
T ss_dssp CHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCC------HHHHHH----HHHHHHHTSCCSEEEEEEHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCC------HHHHHH----HHHHHHHhcCCCEEEEechHHHHhhhhhc
Confidence 788999999988 579999999999999999875 566655 5566666 999999999999999999
Q ss_pred ------cCCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhcc
Q 011817 239 ------AKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLC 309 (477)
Q Consensus 239 ------~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c 309 (477)
.|. +|+|||+|+++|+|+||++|+++.+ ++.+.++||+++|++|.++|.+++..+. +.+.++++|+++|
T Consensus 155 ~~~~~~~~~-~glVvDiG~gtt~v~~v~~G~~~~~-~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~ 232 (418)
T 1k8k_A 155 SRQVGERTL-TGTVIDSGDGVTHVIPVAEGYVIGS-CIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYS 232 (418)
T ss_dssp STTCCSCCC-CEEEEEESSSCEEEEEEETTEECGG-GCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHC
T ss_pred ccccCCCCC-eEEEEEcCCCceEEEEeECCEEccc-ceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhc
Confidence 566 9999999999999999999999988 7899999999999999999998887653 4678999999999
Q ss_pred ccccchhHhhhcc------cccceEeCCCc-----EEEecceeecccccccccccccccc-CCHHHHHHHHHhhcCCCCc
Q 011817 310 YVAADYKAELSKD------TQASLEIAGEG-----WFTLSKERFQTGEILFQPRMADVRT-MGLDQAVALCMDHCHYAEL 377 (477)
Q Consensus 310 ~v~~d~~~e~~~~------~~~~yelpd~~-----~i~l~~er~~~~E~LF~P~~~g~~~-~~L~~~I~~sI~~~~~~dl 377 (477)
|++.++.+++.+. ....|++||+. .+.++.|||.+||.||+|.+.+.+. .+|+++|.++|++|++ |+
T Consensus 233 ~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~-~~ 311 (418)
T 1k8k_A 233 YVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPI-DV 311 (418)
T ss_dssp CCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCG-GG
T ss_pred hhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCH-HH
Confidence 9998877665321 12479999987 8999999999999999999888774 7999999999999998 87
Q ss_pred cCcccccCCeEEecCCCCccchHHHHHHHHHhcC----------------CCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 378 SGDDAWFKTVILTGGSACLPGLAERLEKELRGLL----------------PSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 378 ~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~----------------p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
|+.+++|||||||+|++|||.+||++||..++ |... +++|..+++|.+++|+||||+|++
T Consensus 312 --~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~--~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 312 --RRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPI--DVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp --TTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCC--CCCEECCTTCTTHHHHHHHHHTTS
T ss_pred --HHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCce--eEEEeCCCccccceeHhHHHHHcC
Confidence 78999999999999999999999999999875 3443 488999999999999999999999
Q ss_pred CCccccccccHHHHhhcCC
Q 011817 442 STFPGAWCATKKQFRRKSR 460 (477)
Q Consensus 442 ~~f~~~w~ITk~eY~e~G~ 460 (477)
++|+++| |||+||+|+|.
T Consensus 388 ~~f~~~~-itk~ey~e~G~ 405 (418)
T 1k8k_A 388 PEFYQVC-HTKKDYEEIGP 405 (418)
T ss_dssp HHHHHHS-EEHHHHHHHCG
T ss_pred ccHhheE-EEHHHHhhhCH
Confidence 9999999 99999999994
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=2.7e-48 Score=414.70 Aligned_cols=283 Identities=22% Similarity=0.338 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHhh--hcccCCC---CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHh
Q 011817 165 YSRLRHFFATIYS--RMQVKPS---TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYA 238 (477)
Q Consensus 165 ~~~l~~~~~~i~~--~L~v~p~---~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya 238 (477)
|+.++.+|+|+|. +|+++|+ ++||||++|++++ +..|++ +.|+||| |++|+++++.++++++||
T Consensus 196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp------~~~REk----m~EIlFE~fgvpavyl~~qavlAlya 265 (655)
T 4am6_A 196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFK------KSHVET----FIRVLLTELQFQAVAIIQESLATCYG 265 (655)
T ss_dssp HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCC------HHHHHH----HHHHHHHTSCCSEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCC------HHHHHH----HHHHHHhhcCCCeeeeccHHHHHHHh
Confidence 6789999999985 8999997 8999999999875 666654 6677777 999999999999999999
Q ss_pred cC-CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCC-----CCC---cHHHHHHHHHhcc
Q 011817 239 AK-RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNI-----NFG---SLYTVRTLKEKLC 309 (477)
Q Consensus 239 ~G-~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~-----~~~---~~~~v~~iKe~~c 309 (477)
+| .++|||||+|++.|+|+||++|+++.+ +++++++||+++|++|.++|+.+++ ++. +.+++++|||++|
T Consensus 266 sGl~ttGLVVDiG~g~T~VvPV~eG~vl~~-ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~C 344 (655)
T 4am6_A 266 AGISTSTCVVNIGAAETRIACVDEGTVLEH-SAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFT 344 (655)
T ss_dssp SCCSSCEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHC
T ss_pred CCCCCceEEEcCCCceEEEEEEeCCEEEhh-heeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheE
Confidence 99 799999999999999999999999999 8999999999999999999999986 343 3679999999999
Q ss_pred cc-ccchhHhhhcccccceEeCCC----cEEEecceeecccccccccccccc----------------------------
Q 011817 310 YV-AADYKAELSKDTQASLEIAGE----GWFTLSKERFQTGEILFQPRMADV---------------------------- 356 (477)
Q Consensus 310 ~v-~~d~~~e~~~~~~~~yelpd~----~~i~l~~er~~~~E~LF~P~~~g~---------------------------- 356 (477)
|| ..|+..+. .......|++ ..+.++.|||.+||+||+|.+++.
T Consensus 345 yVs~~Di~~q~---~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd 421 (655)
T 4am6_A 345 TFQDADVAVQL---YNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELND 421 (655)
T ss_dssp CCCGGGCCSEE---EEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCS
T ss_pred EEcccchhhhh---hcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCC
Confidence 99 55642110 0111123543 368899999999999999976321
Q ss_pred --------------------c-------------------------------cCCHHHHHHHHHhhcCC-CCccCccccc
Q 011817 357 --------------------R-------------------------------TMGLDQAVALCMDHCHY-AELSGDDAWF 384 (477)
Q Consensus 357 --------------------~-------------------------------~~~L~~~I~~sI~~~~~-~dl~~r~~L~ 384 (477)
+ ..+|.++|.++|.++.. .|...-+.++
T Consensus 422 ~~S~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y 501 (655)
T 4am6_A 422 WNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFY 501 (655)
T ss_dssp CCCHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred ccchhHHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHh
Confidence 0 14899999999995332 2664335999
Q ss_pred CCeEEecCCCCccchHHHHHHHHHhcCCCCC-------------------------------------------------
Q 011817 385 KTVILTGGSACLPGLAERLEKELRGLLPSSI------------------------------------------------- 415 (477)
Q Consensus 385 ~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~------------------------------------------------- 415 (477)
+||+++||+|+||||..-|...|...-|...
T Consensus 502 ~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (655)
T 4am6_A 502 SNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEE 581 (655)
T ss_dssp TCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHH
T ss_pred hcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhhh
Confidence 9999999999999999888888877544321
Q ss_pred ----------------CCceEEeCCCCC---cchhhhhhHHhhcCCCccccccccHHHHhhcCCcc
Q 011817 416 ----------------SNGIRVIPPPYG---ADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSRFN 462 (477)
Q Consensus 416 ----------------~~~v~v~~~~~~---~~~aW~Ggsilasl~~f~~~w~ITk~eY~e~G~~~ 462 (477)
-.+|+|+++|.+ ++++|+||||||+|++|+++| |||+||+|.|.-.
T Consensus 582 l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~w-It~~Eyde~G~~i 646 (655)
T 4am6_A 582 LEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELF-ITNSDWDVHGSRI 646 (655)
T ss_dssp HHHHHHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHC-EEHHHHHHHGGGG
T ss_pred hhhhhhhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhhee-ecHHHHhhhcchh
Confidence 013789999876 899999999999999999999 9999999999543
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=99.95 E-value=1.3e-27 Score=242.48 Aligned_cols=280 Identities=18% Similarity=0.195 Sum_probs=208.4
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcccccccc----------cCC--------------ccChH-------HHHHHHHHHH
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE----------FGN--------------IESPM-------YSRLRHFFAT 174 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~----------~G~--------------~~~Pi-------~~~l~~~~~~ 174 (477)
.+|+||+||.++|+|++++. |...+||++. +|+ ..+|+ |+.++.+|.+
T Consensus 4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~ 82 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRY 82 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHHHH
T ss_pred ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHHHH
Confidence 57999999999999998765 5555566543 221 12344 5678889988
Q ss_pred Hhhhccc-C-CCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEE
Q 011817 175 IYSRMQV-K-PSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVV 247 (477)
Q Consensus 175 i~~~L~v-~-p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVV 247 (477)
+++++.. . +.+.++++++|..++ ...|+.+++. ++. .|++.+.++++|++|++++|. .+.+||
T Consensus 83 ~l~~~~~~~~~~~~~~vitvP~~~~------~~~r~~~~~a-~~~---aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVv 152 (344)
T 1jce_A 83 FINKAKGGMNLFKPRVVIGVPIGIT------DVERRAILDA-GLE---AGASKVFLIEEPMAAAIGSNLNVEEPSGNMVV 152 (344)
T ss_dssp HHHHHHTSCCSCCCEEEEEECTTCC------HHHHHHHHHH-HHH---TTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEE
T ss_pred HHHHHhhccccCCCeEEEEECCCCC------HHHHHHHHHH-HHH---cCCCeEeccCCHHHHHHhcCCCCCCCceEEEE
Confidence 8876543 3 456789999998764 4566655543 232 999999999999999999986 689999
Q ss_pred eecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHhccccccchhHhhhcccccc
Q 011817 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-NINFGSLYTVRTLKEKLCYVAADYKAELSKDTQAS 326 (477)
Q Consensus 248 DiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~-~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~ 326 (477)
|+|+++|+++++..|.++.. ...++||+++|+.|.+.+.++ +..+ +...++++|+++|+...+...+ ...
T Consensus 153 DiGggttdvsv~~~~~~~~~---~~~~lGG~~id~~l~~~l~~~~~~~~-~~~~ae~~K~~l~~~~~~~~~~-----~~~ 223 (344)
T 1jce_A 153 DIGGGTTEVAVISLGSIVTW---ESIRIAGDEMDEAIVQYVRETYRVAI-GERTAERVKIEIGNVFPSKEND-----ELE 223 (344)
T ss_dssp EECSSCEEEEEEETTEEEEE---EEESCSHHHHHHHHHHHHHHHHCEEC-CHHHHHHHHHHHCBCSCCHHHH-----HCE
T ss_pred EeCCCeEEEEEEEcCCEEee---CCCCccChhHHHHHHHHHHHHhCccc-CHHHHHHHHHHHhccCccccCC-----cce
Confidence 99999999999999988753 568999999999999998764 2222 4678999999999876543211 112
Q ss_pred eEeC-----CCc--EEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCccccc-CCeEEecCCCCccc
Q 011817 327 LEIA-----GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWF-KTVILTGGSACLPG 398 (477)
Q Consensus 327 yelp-----d~~--~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~-~NIvLtGG~S~ipG 398 (477)
++++ +|. .+.++.+++. .+|+|.. ..+.+.|.++|++++. ++ +.+++ ++|+|+||+|++||
T Consensus 224 ~~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~~p~ 292 (344)
T 1jce_A 224 TTVSGIDLSTGLPRKLTLKGGEVR---EALRSVV-----VAIVESVRTTLEKTPP-EL--VSDIIERGIFLTGGGSLLRG 292 (344)
T ss_dssp EEEEEEETTTTEEEEEEEEHHHHH---HHTHHHH-----HHHHHHHHHHHHTSCH-HH--HHHHHHHCEEEESGGGCSBT
T ss_pred EEEeccccCCCCceeEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCc-hh--ccchhhCcEEEECccccchH
Confidence 3333 453 4566665553 4566542 3588889999999886 55 45666 79999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc-CCCccc
Q 011817 399 LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN-LSTFPG 446 (477)
Q Consensus 399 ~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas-l~~f~~ 446 (477)
|.++|++++. .++..+.+|.+++|.||++++. +++|++
T Consensus 293 l~~~l~~~~~----------~~v~~~~~p~~ava~Gaa~~a~~~~~~~~ 331 (344)
T 1jce_A 293 LDTLLQKETG----------ISVIRSEEPLTAVAKGAGMVLDKVNILKK 331 (344)
T ss_dssp HHHHHHHHHS----------SCEEECSSTTTHHHHHHHHGGGCHHHHTT
T ss_pred HHHHHHHHHC----------CCccccCChHHHHHHHHHHHHhChHHHHH
Confidence 9999999995 2344456778999999999998 477764
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.80 E-value=1.3e-18 Score=185.71 Aligned_cols=268 Identities=18% Similarity=0.177 Sum_probs=182.2
Q ss_pred ceEEEeCCcceEEEEEecCCCCCcc--------ccccccc-------CC------ccC-------------hH-------
Q 011817 126 GSVIIDGGSGYCKFGWSKYDCPSGR--------TATFLEF-------GN------IES-------------PM------- 164 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~--------~~s~~~~-------G~------~~~-------------Pi------- 164 (477)
.+|.||+||.++++|++.+..|..+ +||++.+ |+ ... |+
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg~p~~~~~~g~ 82 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPNTIISIKRHMGTDYKVEIEGK 82 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCSSEEECGGGTTTSCCCEEETTE
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCCCcHHHHHHhcCCCcEEEECCE
Confidence 5799999999999999988777665 6766432 21 001 22
Q ss_pred ----HHHHHHHHHHHhh----hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHH
Q 011817 165 ----YSRLRHFFATIYS----RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLAL 236 (477)
Q Consensus 165 ----~~~l~~~~~~i~~----~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlal 236 (477)
.+.+..+++++.+ .++ .....++++.|..++ ...|+.+++.. +. .|++.+.++++|.+|+
T Consensus 83 ~~~~~ei~a~~L~~l~~~ae~~l~--~~~~~~VitvPa~~~------~~qr~a~~~a~-~~---AGl~~~~li~Ep~AAA 150 (509)
T 2v7y_A 83 QYTPQEISAIILQYLKSYAEDYLG--EPVTRAVITVPAYFN------DAQRQATKDAG-RI---AGLEVERIINEPTAAA 150 (509)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHH
T ss_pred EEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEecCHHHHH
Confidence 2233333333332 233 234579999998764 45676665543 33 8999999999999999
Q ss_pred HhcCC-----cceEEEeecCceeEEEEEE--eCee-eecccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc------
Q 011817 237 YAAKR-----TSGIVVNIGFQVTSVVPIL--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS------ 297 (477)
Q Consensus 237 ya~G~-----~tglVVDiG~~~T~v~PV~--dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~------ 297 (477)
+++|. .+.+|+|+|+++|+++.+. +|.. +.. .....++||.++++.|.+++.++ +.++..
T Consensus 151 lay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a-~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~ 229 (509)
T 2v7y_A 151 LAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKA-TAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQ 229 (509)
T ss_dssp HHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEE-EEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHH
T ss_pred HHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEE-ecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence 99885 4789999999999999775 3543 222 23445899999999999887653 444321
Q ss_pred --HHHHHHHHHhccccccchhHhhhcccccceEeC------CC---cEEEecceeeccccccccccccccccCCHHHHHH
Q 011817 298 --LYTVRTLKEKLCYVAADYKAELSKDTQASLEIA------GE---GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVA 366 (477)
Q Consensus 298 --~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelp------d~---~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~ 366 (477)
...++++|+.++.... ..+++| +| ..+.++.++| |.+|+|.+ ..+.+.|.
T Consensus 230 ~l~~~aE~~K~~ls~~~~-----------~~i~l~~~~~~~~G~~~~~~~itr~~f---e~l~~~~~-----~~i~~~i~ 290 (509)
T 2v7y_A 230 RLKDAAEKAKKELSGVTQ-----------TQISLPFISANENGPLHLEMTLTRAKF---EELSAHLV-----ERTMGPVR 290 (509)
T ss_dssp HHHHHHHHHHHHTTTCSE-----------EEEEEEEEEEETTEEEEEEEEEEHHHH---HHHTHHHH-----HTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCc-----------EEEEEeccccCCCCCeeEEEEEEHHHH---HHHHHHHH-----HHHHHHHH
Confidence 2567888888775431 122332 22 2235555444 34555532 24778888
Q ss_pred HHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 367 LCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 367 ~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
++|+.+.. ......+|+|+||+|++|++.++|++++.. ++..+.+|..++|.||+++|.
T Consensus 291 ~~L~~a~~-----~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~----------~~~~~~~p~~aVa~Gaa~~a~ 349 (509)
T 2v7y_A 291 QALQDAGL-----TPADIDKVILVGGSTRIPAVQEAIKRELGK----------EPHKGVNPDEVVAIGAAIQGG 349 (509)
T ss_dssp HHHHHHTC-----CGGGCSEEEEESGGGGCHHHHHHHHHHHSS----------CCBCCSCTTTHHHHHHHHHHH
T ss_pred HHHHHcCC-----ChhHCcEEEEECCcccChHHHHHHHHHhCC----------CcCcCCCchhhhHhhHHHHHH
Confidence 89988875 234568999999999999999999999852 233456778999999999886
No 10
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.79 E-value=1.4e-18 Score=178.34 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=150.8
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCCc------ceEEEeecCceeEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT------SGIVVNIGFQVTSVVPI 259 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~~------tglVVDiG~~~T~v~PV 259 (477)
..++++.|..++ ...|+.+++.+ +. .|++.+.++++|++|+++++.. +.+|||+|+++|+++.+
T Consensus 136 ~~~vitvP~~~~------~~~r~~~~~a~-~~---aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~ 205 (383)
T 1dkg_D 136 TEAVITVPAYFN------DAQRQATKDAG-RI---AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISII 205 (383)
T ss_dssp CEEEECBCTTCC------HHHHHHHHHHH-HH---TTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEE
T ss_pred CeEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEE
Confidence 468999998764 45666655543 22 8999999999999999988753 68999999999999977
Q ss_pred EeC------eeeecccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchhHhhh
Q 011817 260 LHG------KVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELS 320 (477)
Q Consensus 260 ~dG------~~l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~ 320 (477)
..+ ...........++||.++++.|.+++.++ +.++.. ...++++|+.++..... ++
T Consensus 206 ~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~---~i- 281 (383)
T 1dkg_D 206 EIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT---DV- 281 (383)
T ss_dssp EEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE---EE-
T ss_pred EEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce---EE-
Confidence 654 22111012346899999999999888654 444422 35688899988764311 00
Q ss_pred cccccceEeCCC-c--EEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCcc
Q 011817 321 KDTQASLEIAGE-G--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLP 397 (477)
Q Consensus 321 ~~~~~~yelpd~-~--~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ip 397 (477)
.....++.++| . .+.++.++|. .+|+|.+ ..+.++|.++|.++.. +.....+|+|+||+|++|
T Consensus 282 -~i~~~~~~~~G~~~~~~~it~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~-----~~~~i~~IvL~GG~s~~p 347 (383)
T 1dkg_D 282 -NLPYITADATGPKHMNIKVTRAKLE---SLVEDLV-----NRSIELLKVALQDAGL-----SVSDIDDVILVGGQTRMP 347 (383)
T ss_dssp -EEEEEEEETTEEEEEEEEEEHHHHH---HHSHHHH-----HHHHHHHHHHHHTTTC-----CTTTCCEEEEESGGGGSH
T ss_pred -EEecccccCCCCeeEEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCC-----CHhhCCEEEEecCccccH
Confidence 00011233334 2 2355555442 4555542 2477888889988764 234558999999999999
Q ss_pred chHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 398 GLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 398 G~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
|+.++|++++.. ++..+.+|.+++|.||+++|.+
T Consensus 348 ~l~~~l~~~~~~----------~v~~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 348 MVQKKVAEFFGK----------EPRKDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp HHHHHHHHHHSS----------CCBCSSCTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCC----------CCCCCcChHHHHHHHHHHHHHh
Confidence 999999999952 2345567889999999999875
No 11
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.78 E-value=3.1e-18 Score=167.57 Aligned_cols=235 Identities=17% Similarity=0.159 Sum_probs=159.8
Q ss_pred ceEEEeCCcceEEEEEecCCC-CCc--cccc-ccccCCccChHHHHHHHHHHHHhhh----cccCCCCCCeEEEecCCCC
Q 011817 126 GSVIIDGGSGYCKFGWSKYDC-PSG--RTAT-FLEFGNIESPMYSRLRHFFATIYSR----MQVKPSTQPIVVSIPICHY 197 (477)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~-P~~--~~~s-~~~~G~~~~Pi~~~l~~~~~~i~~~----L~v~p~~~pVll~ep~~~~ 197 (477)
-.++||+||.++|+....++. +-. ..++ .+..|-+.. ++.++.+|+++++. .+.. ...++++.|....
T Consensus 29 ~~~gIDiGS~s~k~vi~~~~~~~l~~~~~~~~~l~~g~i~d--~~~~~~~l~~~~~~~~~~~~~~--~~~~v~tvp~~~~ 104 (272)
T 3h1q_A 29 YKVGVDLGTADIVLVVTDQEGIPVAGALKWASVVKDGLVVD--YIGAIQIVRELKAKVERLLGSE--LFQAATAIPPGTV 104 (272)
T ss_dssp CEEEEECCSSEEEEEEECTTCCEEEEEEEECCCCBTTBCTT--HHHHHHHHHHHHHHHHHHSSSC--CCEEEEECCSCC-
T ss_pred EEEEEEcccceEEEEEECCCCcEEEEEeecccccCCCEEEc--HHHHHHHHHHHHHHHHHhcCCc--cCeEEEEcCCCCC
Confidence 368999999999999864332 100 0111 011121111 46666677666543 2322 2346677776542
Q ss_pred CCccchHHhHHHHHHHHHHHHhh-cCCCeEEEeccchHHHHhcCCcceEEEeecCceeEEEEEEeCeeeecccEEEEccc
Q 011817 198 DDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG 276 (477)
Q Consensus 198 ~~t~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vG 276 (477)
...|+. . +.+++ +|++...+..++.++++++|..+++|||+|+++|.++++.+|.++.. ...++|
T Consensus 105 ------~~~~~~-~----~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~~---~~~~~G 170 (272)
T 3h1q_A 105 ------GRNAEA-C----GHVVAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITAT---FDEPTG 170 (272)
T ss_dssp --------CTTH-H----HHHHHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEEE---CCBSCC
T ss_pred ------HHHHHH-H----HHHHHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEEE---ecCCCc
Confidence 233332 2 22444 99999999999999999999999999999999999999999998754 568999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeecccccccccccccc
Q 011817 277 ALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356 (477)
Q Consensus 277 G~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~ 356 (477)
|.++++.+.+.+.. +.+.++++|++++. . +++. .+.+.++
T Consensus 171 g~~~~~~l~~~l~~------~~~~ae~~k~~~~~--~---~~~~----------------------~~~~~~~------- 210 (272)
T 3h1q_A 171 GTHLSLVLAGSYKI------PFEEAETIKKDFSR--H---REIM----------------------RVVRPVI------- 210 (272)
T ss_dssp HHHHHHHHHHHHTC------CHHHHHHHHHSSTT--H---HHHH----------------------HHHHHHH-------
T ss_pred HHHHHHHHHHHhCC------CHHHHHHHHHhcCC--H---HHHH----------------------HHHHHHH-------
Confidence 99999999988752 45788899988651 0 0000 0001111
Q ss_pred ccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhH
Q 011817 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAK 436 (477)
Q Consensus 357 ~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggs 436 (477)
..+.+.|.+++++++ + ..+|+|+||+|++|||.++|++++. .+|..+.+|.++.++||+
T Consensus 211 --~~i~~~i~~~l~~~~--~-------~~~ivL~GG~a~~~~l~~~l~~~l~----------~~v~~~~~p~~a~a~Gaa 269 (272)
T 3h1q_A 211 --EKMALIVKEVIKNYD--Q-------TLPVYVVGGTAYLTGFSEEFSRFLG----------KEVQVPIHPLLVTPLGIA 269 (272)
T ss_dssp --HHHHHHHHHHTTTSC--S-------SCCEEEESGGGGSTTHHHHHHHHHS----------SCCBCCSSGGGHHHHHHH
T ss_pred --HHHHHHHHHHHHhcC--C-------CCEEEEECCccchhhHHHHHHHHhC----------CCccccCChHHHHHHHHH
Confidence 135666666666655 1 2489999999999999999999994 344556788999999999
Q ss_pred Hhh
Q 011817 437 LVG 439 (477)
Q Consensus 437 ila 439 (477)
++|
T Consensus 270 l~a 272 (272)
T 3h1q_A 270 LFG 272 (272)
T ss_dssp TTC
T ss_pred hcC
Confidence 875
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.74 E-value=6.5e-17 Score=166.21 Aligned_cols=214 Identities=19% Similarity=0.177 Sum_probs=140.8
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCCcc------eEEEeecCceeEEEE
Q 011817 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTS------GIVVNIGFQVTSVVP 258 (477)
Q Consensus 185 ~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~~t------glVVDiG~~~T~v~P 258 (477)
-..++++.|..++ ...|+.+++.+ +. .|++.+.++++|.++++++|... .+|+|+|+++|+++.
T Consensus 153 ~~~~vitvP~~~~------~~~r~~~~~a~-~~---aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv 222 (394)
T 3qfu_A 153 VTHAVVTVPAYFN------DAQRQATKDAG-TI---AGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSL 222 (394)
T ss_dssp CCEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEE
T ss_pred cceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEE
Confidence 3579999998764 45666555444 32 89999999999999999997543 399999999998877
Q ss_pred EE--eCeeeecccEEEEcccHHHHHHHHHHHHHh-----cCCCCCc-H-------HHHHHHHHhccccccchhHhhhccc
Q 011817 259 IL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS-L-------YTVRTLKEKLCYVAADYKAELSKDT 323 (477)
Q Consensus 259 V~--dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~-----~~~~~~~-~-------~~v~~iKe~~c~v~~d~~~e~~~~~ 323 (477)
+- ++..-........++||.++++.|.+.+.. .+..... . ..++++|+.+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~----------- 291 (394)
T 3qfu_A 223 LSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQM----------- 291 (394)
T ss_dssp EEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTCS-----------
T ss_pred EEEeCCEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccCC-----------
Confidence 64 333211112233689999999999888743 2222211 1 34555665543211
Q ss_pred ccceEeC---CCcE--EEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccc
Q 011817 324 QASLEIA---GEGW--FTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (477)
Q Consensus 324 ~~~yelp---d~~~--i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG 398 (477)
...++++ ++.. +.+..+.+ |-++.|. ...+.+.|.++|+++.. + .....+|+|+||+|++||
T Consensus 292 ~~~~~~~~~~~~~~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~-~----~~~i~~VvLvGG~s~~p~ 358 (394)
T 3qfu_A 292 STRIEIDSFVDGIDLSETLTRAKF---EELNLDL-----FKKTLKPVEKVLQDSGL-E----KKDVDDIVLVGGSTRIPK 358 (394)
T ss_dssp EEEEEEEEEETTEEEEEEEEHHHH---HHHHHHH-----HHHTHHHHHHHHHHHTC-C----GGGCCEEEEESGGGGSHH
T ss_pred cEEEEEEeccCCceeEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC-C----HHHCCEEEEECCccccHH
Confidence 1112221 2322 33333332 2334432 12467788888888775 2 345689999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 399 LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 399 ~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+.++|++++.. .++..+.+|..++|.||+++|.+
T Consensus 359 l~~~l~~~~~~---------~~v~~~~~p~~ava~Gaa~~a~~ 392 (394)
T 3qfu_A 359 VQQLLESYFDG---------KKASKGINPDEAVAYGAAVQAGV 392 (394)
T ss_dssp HHHHHHHHTTT---------CCCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---------CCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999998831 34555667889999999999864
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.69 E-value=3.8e-16 Score=161.33 Aligned_cols=213 Identities=18% Similarity=0.253 Sum_probs=140.0
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCCcc---------eEEEeecCceeEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTS---------GIVVNIGFQVTSV 256 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~~t---------glVVDiG~~~T~v 256 (477)
..++++.|..++ ...|+.+++.. +. .|++.+.++++|.+|+++++... .+|+|+|+++|++
T Consensus 159 ~~~vitvPa~~~------~~~r~~~~~a~-~~---AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dv 228 (404)
T 3i33_A 159 HSAVITVPAYFN------DSQRQATKDAG-TI---TGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDV 228 (404)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HH---HTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEE
T ss_pred CcEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEE
Confidence 469999998764 45666555442 32 89999999999999999987543 3999999999999
Q ss_pred EEEE--eCeeeecccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchhHhhhc
Q 011817 257 VPIL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSK 321 (477)
Q Consensus 257 ~PV~--dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~ 321 (477)
+.+- +|...........++||.++++.|.+.+..+ +..+.. ...++++|+.+....
T Consensus 229 sv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~--------- 299 (404)
T 3i33_A 229 SILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSST--------- 299 (404)
T ss_dssp EEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSS---------
T ss_pred EEEEEeCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCc---------
Confidence 8774 3332111123346899999999998877432 333211 134566666654211
Q ss_pred ccccceEe---CCCc--EEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCc
Q 011817 322 DTQASLEI---AGEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL 396 (477)
Q Consensus 322 ~~~~~yel---pd~~--~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~i 396 (477)
...+.+ .++. .+.++.+.+ |-++.|.. ..+.+.|.++|+++.. + .....+|+|+||+|++
T Consensus 300 --~~~~~~~~~~~g~~~~~~i~r~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~-~----~~~i~~VvLvGG~s~~ 364 (404)
T 3i33_A 300 --QASIEIDSLYEGVDFYTSITRARF---EELNADLF-----RGTLEPVEKALRDAKL-D----KGQIQEIVLVGGSTRI 364 (404)
T ss_dssp --EEEEEEEEEETTEEEEEEEEHHHH---HHHTHHHH-----HHTHHHHHHHHHHHTC-C----GGGCCEEEEESGGGGC
T ss_pred --ceEEEEeeccCCceeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----HhhCCEEEEECCcccc
Confidence 111222 1232 233443333 23344321 2466778888887764 2 3455889999999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 397 PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 397 pG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
|++.++|++.+.. .++..+.+|..+++.||+++|.+
T Consensus 365 p~l~~~l~~~~~~---------~~v~~~~~p~~ava~Gaa~~a~~ 400 (404)
T 3i33_A 365 PKIQKLLQDFFNG---------KELNKSINPDEAVAYGAAVQAAI 400 (404)
T ss_dssp HHHHHHHHHHTTT---------CCCBCSSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---------CCCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999998831 33455667889999999999864
No 14
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.54 E-value=1.8e-13 Score=148.82 Aligned_cols=211 Identities=15% Similarity=0.160 Sum_probs=140.8
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCCc------ceEEEeecCceeEEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT------SGIVVNIGFQVTSVVPI 259 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~~------tglVVDiG~~~T~v~PV 259 (477)
..++++.|.... ...|+.+++.. +. .|+..+.++++|.+|++++|.. +.+|+|+|+++++|+.+
T Consensus 136 ~~~VitVPa~f~------d~qr~a~~~A~-~~---AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 2kho_A 136 TEAVITVPAYFN------DAQRQATKDAG-RI---AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISII 205 (605)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HT---TTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEE
T ss_pred cEEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEE
Confidence 468899998763 45666555443 22 8999999999999999998743 36999999999999988
Q ss_pred Ee------Cee-eecccEEEEcccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchhHhh
Q 011817 260 LH------GKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAEL 319 (477)
Q Consensus 260 ~d------G~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~ 319 (477)
.- |.. +.. .....++||.++++.|.+.+..+ +..+.. ...++.+|+.++....
T Consensus 206 ~~~~~~~~g~~~v~a-~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~------ 278 (605)
T 2kho_A 206 EIDEVDGEKTFEVLA-TNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ------ 278 (605)
T ss_dssp EEECTTTSCEEEEEE-EEEESSCSGGGTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSE------
T ss_pred EEEecCCCCeEEEEE-ECCCCCccHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCc------
Confidence 63 432 111 22335899999999998877543 444321 2457778887664321
Q ss_pred hcccccceEeC------CC-c--EEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEe
Q 011817 320 SKDTQASLEIA------GE-G--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILT 390 (477)
Q Consensus 320 ~~~~~~~yelp------d~-~--~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLt 390 (477)
..+++| +| . .+.++.+.| |-++.|.+ ..+.+.|.++|..+.. . ..-...|+|+
T Consensus 279 -----~~i~l~~~~~~~~G~~~~~~~itr~~f---e~l~~~~~-----~~i~~~i~~~L~~a~~-~----~~~i~~VvLv 340 (605)
T 2kho_A 279 -----TDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDLV-----NRSIEPLKVALQDAGL-S----VSDIDDVILV 340 (605)
T ss_dssp -----EEEEEEEEEEETTEEEEEEEEEEHHHH---HTTCCSTT-----GGGTSHHHHHHHTTTC-C----TTTCSEEEEE
T ss_pred -----eEEEecccccCCCCceEEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----hhhCceEEEE
Confidence 112222 12 1 234444433 33444432 2356677788887664 2 2344789999
Q ss_pred cCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 391 GGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 391 GG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
||+|++|++.++|++.+.. .+....+|..+++.||++.|..
T Consensus 341 GG~srip~v~~~l~~~fg~----------~~~~~~npd~aVA~GAa~~a~~ 381 (605)
T 2kho_A 341 GGQTRMPMVQKKVAEFFGK----------EPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp SGGGGSHHHHHHHHHHHSS----------CCBCSSCTTTHHHHHHHHHHTT
T ss_pred CCcccChHHHHHHHHhcCC----------CcCcCCCcchHHHHHHHHHHHH
Confidence 9999999999999998842 1234456788999999999864
No 15
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.53 E-value=5.1e-13 Score=143.91 Aligned_cols=211 Identities=18% Similarity=0.240 Sum_probs=140.0
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC-------cceEEEeecCceeEEEE
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-------TSGIVVNIGFQVTSVVP 258 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~-------~tglVVDiG~~~T~v~P 258 (477)
..++++.|...+ ...|+.+++.. +. .|++.+.++++|.+|++++|. .+.+|+|+|+++++++.
T Consensus 140 ~~~VitVPa~f~------~~qr~a~~~A~-~~---AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv 209 (554)
T 1yuw_A 140 TNAVVTVPAYFN------DSQRQATKDAG-TI---AGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSI 209 (554)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HT---TTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEE
T ss_pred CeEEEEECCCCC------HHHHHHHHHHH-HH---cCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEE
Confidence 468999998764 45566555433 22 899999999999999998873 45799999999999998
Q ss_pred EE--eCee-eecccEEEEcccHHHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhccccccchhHhhhcc
Q 011817 259 IL--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKAELSKD 322 (477)
Q Consensus 259 V~--dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~-----~~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~ 322 (477)
+. +|.. +.. ......+||.++++.|.+.+.. .+.++.. ...++++|+.++...
T Consensus 210 ~~~~~g~~~v~a-~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~---------- 278 (554)
T 1yuw_A 210 LTIAAGIFEVKS-TAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST---------- 278 (554)
T ss_dssp EEEETTEEEEEE-EEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSS----------
T ss_pred EEEcCCcEEEEE-EeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCc----------
Confidence 76 5654 222 2344689999999998887743 2333321 245677787765432
Q ss_pred cccceEeC---CCc--EEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCcc
Q 011817 323 TQASLEIA---GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLP 397 (477)
Q Consensus 323 ~~~~yelp---d~~--~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ip 397 (477)
...++++ +|. .+.+..+.| |-++.|.. ..+.+.|.++++.+.. ...-...|+|+||+|++|
T Consensus 279 -~~~i~i~~~~~g~~~~~~ltr~~~---e~l~~~~~-----~~i~~~i~~~L~~a~~-----~~~~i~~VvLvGG~srip 344 (554)
T 1yuw_A 279 -QASIEIDSLYEGIDFYTSITRARF---EELNADLF-----RGTLDPVEKALRDAKL-----DKSQIHDIVLVGGSTRIP 344 (554)
T ss_dssp -EEEEEETTCSSSCCEEEEEEHHHH---HHHTHHHH-----HHTTHHHHHHHHHTTC-----CGGGCCEEEEESGGGGCH
T ss_pred -eEEEEEeeccCCceEEEEEEHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-----ChhhCcEEEEECCcccCh
Confidence 1123332 232 234444333 22333321 1245567777776653 123458899999999999
Q ss_pred chHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 398 GLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 398 G~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
++.++|++.+.. .++..+.+|..+++.||++.|.
T Consensus 345 ~v~~~l~~~f~~---------~~v~~~~np~~aVA~Gaa~~a~ 378 (554)
T 1yuw_A 345 KIQKLLQDFFNG---------KELNKSINPDEAVAYGAAVQAA 378 (554)
T ss_dssp HHHHHHHHHTTT---------CCCBCCSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---------CccccCCCchhHHHHHHHHHHH
Confidence 999999988742 1233455678999999999885
No 16
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.49 E-value=5.4e-15 Score=144.63 Aligned_cols=61 Identities=25% Similarity=0.603 Sum_probs=58.7
Q ss_pred ccccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhhcCCCCcceeeec
Q 011817 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWDSIFFGE 96 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 96 (477)
|+|+.||.||+++|+++|+|+|+||++.|||+||.+++||.|||+||++|++.|+||....
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s 63 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKS 63 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGG
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCcccccc
Confidence 7899999999999999999999999999999999999999999999999999999998643
No 17
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.49 E-value=1.6e-12 Score=142.99 Aligned_cols=210 Identities=15% Similarity=0.193 Sum_probs=139.8
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC------------cceEEEeecCce
Q 011817 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------------TSGIVVNIGFQV 253 (477)
Q Consensus 186 ~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~------------~tglVVDiG~~~ 253 (477)
..++++.|.... ...|+.+++.. +. .|++.+.++++|.+|++++|. .+.+|+|+|+++
T Consensus 139 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT 208 (675)
T 3d2f_A 139 TDVCIAVPPWYT------EEQRYNIADAA-RI---AGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSS 208 (675)
T ss_dssp CEEEEEECTTCC------HHHHHHHHHHH-HH---TTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSC
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCc
Confidence 368999998764 45666655533 33 899999999999999988752 357999999999
Q ss_pred eEEEEEE--eCee-eecccEEEEcccHHHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhccccccchhH
Q 011817 254 TSVVPIL--HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKA 317 (477)
Q Consensus 254 T~v~PV~--dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~-----~~~~~~~--------~~~v~~iKe~~c~v~~d~~~ 317 (477)
++|+.+. +|.. +.. ......+||.++++.|.+.+.. .+.++.. ...++.+|+.++...
T Consensus 209 ~Dvsv~~~~~g~~~V~a-~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~----- 282 (675)
T 3d2f_A 209 YTCSIMAFKKGQLKVLG-TACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT----- 282 (675)
T ss_dssp EEEEEEEEETTEEEEEE-EEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCS-----
T ss_pred EEEEEEEecCCeEEEEE-EcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCC-----
Confidence 9998875 5654 222 2234689999999999988753 2443321 245677887765321
Q ss_pred hhhcccccceEeC---CC--cEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecC
Q 011817 318 ELSKDTQASLEIA---GE--GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGG 392 (477)
Q Consensus 318 e~~~~~~~~yelp---d~--~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG 392 (477)
...++++ +| ..+.++.+.| |-++.|.+ ..+.+.|.+++..... . ..-...|+|+||
T Consensus 283 ------~~~i~i~~~~~g~~~~~~itr~~f---e~l~~~l~-----~~i~~~i~~~L~~a~l-~----~~~I~~VvLvGG 343 (675)
T 3d2f_A 283 ------NAPFSVESVMNDVDVSSQLSREEL---EELVKPLL-----ERVTEPVTKALAQAKL-S----AEEVDFVEIIGG 343 (675)
T ss_dssp ------EEEEEETTSSSSCCEEEEEEHHHH---HHHTHHHH-----TTTTHHHHHHHHHHTC-C----GGGCCEEEEESG
T ss_pred ------ceEEEEeeeccCceEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHhCC-C----hhhCcEEEEECC
Confidence 1122232 12 2344444433 22333321 2355677777777653 2 123478999999
Q ss_pred CCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 393 SACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 393 ~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
+|++|++.++|++.+. ..+....+|..++..||++.|.
T Consensus 344 ssriP~v~~~l~~~fg----------~~~~~~~nPdeaVA~GAa~~a~ 381 (675)
T 3d2f_A 344 TTRIPTLKQSISEAFG----------KPLSTTLNQDEAIAKGAAFICA 381 (675)
T ss_dssp GGGSHHHHHHHHHHHT----------SCEECCSCTTTHHHHHHHHHHH
T ss_pred CccChHHHHHHHHhcC----------CCccccCCcchHHHHHHHHHHH
Confidence 9999999999998884 2244556778999999999876
No 18
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.42 E-value=5.5e-12 Score=130.43 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=136.5
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCCc--------ceEEEeecCceeEE
Q 011817 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT--------SGIVVNIGFQVTSV 256 (477)
Q Consensus 185 ~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~~--------tglVVDiG~~~T~v 256 (477)
...++++.|.... ...|+.+++.+.. .|+..+.++++|.+|+++++.. +.+|+|+|+++|++
T Consensus 150 ~~~~vitvPa~~~------~~~r~~~~~a~~~----AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dv 219 (409)
T 4gni_A 150 VTSAVITIPTNFT------EKQKAALIAAAAA----ADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDV 219 (409)
T ss_dssp CCEEEEEECTTCC------HHHHHHHHHHHHH----TTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEE
T ss_pred CCeEEEEECCCCC------HHHHHHHHHHHHH----cCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEE
Confidence 3468999998663 4556555544433 7999999999999999999864 47999999999999
Q ss_pred EEEE-eCeeeecc-cEEEEcccHHHHHHHHHHHHHhc-----C--CCCC-cH-------HHHHHHHHhccccccchhHhh
Q 011817 257 VPIL-HGKVMRKV-GVEVMGLGALKLTGYLRLLMQQN-----N--INFG-SL-------YTVRTLKEKLCYVAADYKAEL 319 (477)
Q Consensus 257 ~PV~-dG~~l~~~-~~~~~~vGG~~lt~~L~~lL~~~-----~--~~~~-~~-------~~v~~iKe~~c~v~~d~~~e~ 319 (477)
+-+. .+..+... .....++||.++++.|.+.+..+ + .+.. .. ..++.+|+.+...
T Consensus 220 sv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~-------- 291 (409)
T 4gni_A 220 TVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRS-------- 291 (409)
T ss_dssp EEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred EEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCC--------
Confidence 8752 22221110 12236899999999998887642 1 1111 11 2456666654311
Q ss_pred hcccccceEeC---CCc--EEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccccCCeEEecCCC
Q 011817 320 SKDTQASLEIA---GEG--WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (477)
Q Consensus 320 ~~~~~~~yelp---d~~--~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S 394 (477)
....++++ ++. .+.++.+.+ |-++.|.+ ..+.++|.+++++... ...-...|+|+||+|
T Consensus 292 ---~~~~i~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~-----~~~~i~~V~LvGG~s 355 (409)
T 4gni_A 292 ---TNASFSVESLIDGLDFASTINRLRY---ETIARTVF-----EGFNRLVESAVKKAGL-----DPLDVDEVIMSGGTS 355 (409)
T ss_dssp ---SEEEEEEEEEETTEEEEEEEEHHHH---HHHTHHHH-----HHHHHHHHHHHHHTTC-----CGGGCCEEEEESGGG
T ss_pred ---CceEEEeecccCCcceEEEeeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-----CHHHCCEEEEECCcc
Confidence 11122222 222 233333222 23344421 2466777778877654 223458899999999
Q ss_pred CccchHHHHHHHHHhcCCCCCCCceEE------eCCCCCcchhhhhhHHhhcC
Q 011817 395 CLPGLAERLEKELRGLLPSSISNGIRV------IPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 395 ~ipG~~eRL~~EL~~l~p~~~~~~v~v------~~~~~~~~~aW~Ggsilasl 441 (477)
++|++.++|++.+.. .++| ....+|..++-.||++.|..
T Consensus 356 ~~p~v~~~l~~~f~~--------~~~v~~P~~~~~~~~p~~ava~GAa~~~~~ 400 (409)
T 4gni_A 356 NTPRIAANFRYIFPE--------STRILAPSTDPSALNPSELQARGAALQASL 400 (409)
T ss_dssp GCHHHHHHHHHHSCT--------TSEEESTTTCTTCCCTTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCC--------ccccccccccCCCcCHHHHHHHHHHHHhhh
Confidence 999999999988742 1345 23456788999999999876
No 19
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.30 E-value=3.3e-11 Score=131.02 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=134.3
Q ss_pred hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhcCCCeEEEeccchHHHHhcCC------cceEEEeecC
Q 011817 178 RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGF 251 (477)
Q Consensus 178 ~L~v~p~~~pVll~ep~~~~~~t~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~G~------~tglVVDiG~ 251 (477)
.|+.. -..++++.|.... ...|+.+++.... .|++.+.++++|.+|++++|. .+-+|+|+|+
T Consensus 130 ~lg~~--v~~~VITVPa~f~------~~qr~a~~~Aa~~----AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGG 197 (605)
T 4b9q_A 130 YLGEP--VTEAVITVPAYFN------DAQRQATKDAGRI----AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGG 197 (605)
T ss_dssp HHTSC--CCEEEEEECTTCC------HHHHHHHHHHHHH----TTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECS
T ss_pred HhCCC--CCeEEEEECCCCC------HHHHHHHHHHHHH----cCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCC
Confidence 45543 2368999997763 4566655544333 899999999999999999873 3468999999
Q ss_pred ceeEEEEEEeCe-----eeec-ccEEEEcccHHHHHHHHHHHHHh-----cCCCCC-c-------HHHHHHHHHhccccc
Q 011817 252 QVTSVVPILHGK-----VMRK-VGVEVMGLGALKLTGYLRLLMQQ-----NNINFG-S-------LYTVRTLKEKLCYVA 312 (477)
Q Consensus 252 ~~T~v~PV~dG~-----~l~~-~~~~~~~vGG~~lt~~L~~lL~~-----~~~~~~-~-------~~~v~~iKe~~c~v~ 312 (477)
++++++.+--+. .+.. .......+||.++++.|.+.+.. .+.... + ...++.+|+.+....
T Consensus 198 GT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~ 277 (605)
T 4b9q_A 198 GAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ 277 (605)
T ss_dssp SCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCC
Confidence 999999775433 1111 01223578999999998887754 233321 1 234666676654321
Q ss_pred cchhHhhhcccccceEeC----C--C---cEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCCCccCcccc
Q 011817 313 ADYKAELSKDTQASLEIA----G--E---GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAW 383 (477)
Q Consensus 313 ~d~~~e~~~~~~~~yelp----d--~---~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~dl~~r~~L 383 (477)
...+++| + | ..+.++.+.| |-++.|.+ ..+.+.|.+++..... . ..-
T Consensus 278 -----------~~~i~~~~~~~~~~g~~~~~~~itr~~~---e~l~~~~~-----~~i~~~v~~~L~~a~~-~----~~~ 333 (605)
T 4b9q_A 278 -----------QTDVNLPYITADATGPKHMNIKVTRAKL---ESLVEDLV-----NRSIEPLKVALQDAGL-S----VSD 333 (605)
T ss_dssp -----------EEEEEEEEEEECSSSEEEEEEEEEHHHH---HHHHHHHH-----HHTTHHHHHHHHHTTC-C----GGG
T ss_pred -----------CeEEEEeeeccCCCCCeeEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC-C----HHH
Confidence 1111221 1 1 1233333322 22333321 1345566677766543 2 233
Q ss_pred cCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 384 FKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 384 ~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
...|+|+||+|++|++.++|++.+.. .+....+|..++-.||++.|.
T Consensus 334 i~~VvLvGG~sriP~v~~~l~~~fg~----------~~~~~~nPdeaVA~GAai~a~ 380 (605)
T 4b9q_A 334 IDDVILVGGQTRMPMVQKKVAEFFGK----------EPRKDVNPDEAVAIGAAVQGG 380 (605)
T ss_dssp CSEEEEESGGGGSHHHHHHHHHHHTS----------CCCSSSCTTTHHHHHHHHHHH
T ss_pred CcEEEEeCCccCchHHHHHHHHHhcc----------CcCCCcChhHHHHHhHHHHHH
Confidence 47899999999999999999988842 223344567788899998876
No 20
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.28 E-value=5.7e-11 Score=121.31 Aligned_cols=162 Identities=21% Similarity=0.240 Sum_probs=104.0
Q ss_pred cCCCeEEEeccchHHHHhcC------C-cceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCC
Q 011817 221 LNVPAVCAINQATLALYAAK------R-TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNI 293 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~G------~-~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~ 293 (477)
.|+.-..+..+++++++++| . .+.+|||+|+++|+++.+.+|.++.. ...++||.++++.+.+.+ +.
T Consensus 163 aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~~---~~~~~GG~~i~~~i~~~~---~~ 236 (377)
T 2ych_A 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAV---RVLTLSGKDFTEAIARSF---NL 236 (377)
T ss_dssp TTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEEE---EEESCSHHHHHHHHHHHT---TC
T ss_pred CCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEEE---EeeechHHHHHHHHHHHh---CC
Confidence 89999999999999988864 2 33599999999999999999998754 668999999999988743 22
Q ss_pred CCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcC
Q 011817 294 NFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCH 373 (477)
Q Consensus 294 ~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~ 373 (477)
+...++++|+++++...+..++ ...+++++ ..+.++.+. ..|++ .|. ...+.+.|.++++.+.
T Consensus 237 ---~~~~aE~~K~~~~~~~~~~~~~-----~~~i~~~~-~~~~i~~~~--~~~~i-~~~-----~~~i~~~i~~~l~~~~ 299 (377)
T 2ych_A 237 ---DLLAAEEVKRTYGMATLPTEDE-----ELLLDFDA-ERERYSPGR--IYDAI-RPV-----LVELTQELRRSLEFFR 299 (377)
T ss_dssp ---CHHHHHHHHHHTC-------------------------------C--HHHHH-HHH-----HHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHhhccccccccccc-----cccccccc-ccccCCHHH--HHHHH-HHH-----HHHHHHHHHHHHHHHH
Confidence 3678999999988765322111 11123332 222333221 11111 221 1246667777777654
Q ss_pred CCCccCcccccCCeEEecCCCCccchHHHHHHHHH
Q 011817 374 YAELSGDDAWFKTVILTGGSACLPGLAERLEKELR 408 (477)
Q Consensus 374 ~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~ 408 (477)
. .. +....++|+||||+|++||+.++|++++.
T Consensus 300 ~-~~--~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 300 I-QL--EEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp H-HC-----CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred h-cc--CCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 3 22 34567899999999999999999999996
No 21
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.09 E-value=1e-09 Score=114.08 Aligned_cols=198 Identities=15% Similarity=0.123 Sum_probs=126.2
Q ss_pred HHHHHHHhhcCCCeEEEeccchHHHHhcCC-----cceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHH
Q 011817 212 DCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRL 286 (477)
Q Consensus 212 e~l~e~lFE~~vpav~~~~~~vlalya~G~-----~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~ 286 (477)
+.+.+++-..|..-..++.+|+++++++.. .+.+|||+|+++|+++.+.+|.+... ...++||+++|+.+..
T Consensus 171 ~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~---~~i~~GG~~it~dIa~ 247 (419)
T 4a2a_A 171 EMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI---SYVPVGMKHVIKDVSA 247 (419)
T ss_dssp HHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE---EEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEE---EecccHHHHHHHHHHH
Confidence 334443322788888899999999998864 35799999999999999999998764 5689999999999987
Q ss_pred HHHhcCCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCC---cEEEecceeeccccccccccccccccCCHHH
Q 011817 287 LMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGE---GWFTLSKERFQTGEILFQPRMADVRTMGLDQ 363 (477)
Q Consensus 287 lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~---~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~ 363 (477)
.+.. +...+|++|.+++....+. .....+++|.. ....++.+. ..|+ ..|. -..+.+
T Consensus 248 ~l~~------~~~~AE~iK~~~g~a~~~~------~~~~~i~v~~~~~~~~~~is~~~--l~~i-i~p~-----veei~~ 307 (419)
T 4a2a_A 248 VLDT------SFEESERLIITHGNAVYND------LKEEEIQYRGLDGNTIKTTTAKK--LSVI-IHAR-----LREIMS 307 (419)
T ss_dssp HHTC------CHHHHHHHHHHHCCSCCTT------CCCCEEEEECTTSCSEEEEEHHH--HHHH-HHHH-----HHHHHH
T ss_pred HHCC------CHHHHHHHHHHhccCcccC------CCCceEEEeecCCccceEEcHHH--HHHH-HHHH-----HHHHHH
Confidence 6643 4688999999876543221 11223444321 112222211 1111 1111 123556
Q ss_pred HHHHHHhhcCCC--CccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeC-----C----------CC
Q 011817 364 AVALCMDHCHYA--ELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIP-----P----------PY 426 (477)
Q Consensus 364 ~I~~sI~~~~~~--dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~-----~----------~~ 426 (477)
.|.+.|+..... +.. .....+.|+||||+|++||+.+.+++.+..- +++.. | .+
T Consensus 308 ~V~~~L~~~~~~~p~~~-~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~--------vri~~~~~~~p~~~~~~~~~~~~ 378 (419)
T 4a2a_A 308 KSKKFFREVEAKIVEEG-EIGIPGGVVLTGGGAKIPRINELATEVFKSP--------VRTGCYANSDRPSIINADEVAND 378 (419)
T ss_dssp HHHHHHHHHTTCC---------TTCEEEESGGGGSTTHHHHHHHHHTSC--------EEECCGGGSSSCCCBTCHHHHTC
T ss_pred HHHHHHHHcCCCccccc-ccccCCEEEEECchhchhhHHHHHHHHHCCC--------eEEEecCCCCchhccCcccccCC
Confidence 677777766530 110 1356788999999999999999999999631 33322 1 35
Q ss_pred CcchhhhhhHHhhcC
Q 011817 427 GADTAWFGAKLVGNL 441 (477)
Q Consensus 427 ~~~~aW~Ggsilasl 441 (477)
|.|++-+|-.+++.-
T Consensus 379 P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 379 PSFAAAFGNVFAVSE 393 (419)
T ss_dssp GGGHHHHHTTCC---
T ss_pred chHHHHHHHHHHHhh
Confidence 678888887776643
No 22
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=98.94 E-value=3.4e-09 Score=107.38 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=70.1
Q ss_pred CCeE--EEecCCCCCCccchHHhHHHHHHHHHHHH--hh--------cCCCeEEEeccchHHHHhc--C-----C-cceE
Q 011817 186 QPIV--VSIPICHYDDTENAKASRRQLKDCFQQVL--FD--------LNVPAVCAINQATLALYAA--K-----R-TSGI 245 (477)
Q Consensus 186 ~pVl--l~ep~~~~~~t~~~~~~R~~~~e~l~e~l--FE--------~~vpav~~~~~~vlalya~--G-----~-~tgl 245 (477)
..++ ++.|... ....|+.+++.+.... ++ +++..+.++++|.+|++++ + . .+.+
T Consensus 120 ~~vvL~i~vP~~~------~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l~~~~~~~~~~~vl 193 (346)
T 2fsj_A 120 VDLVIGSGTPLGT------FDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGV 193 (346)
T ss_dssp EEEEEEEEECGGG------HHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHHHTSSCCCSSEEE
T ss_pred eEEEEcccCCHHH------HHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhhccccccccCCcEE
Confidence 3488 8888743 2345666655533310 00 1356789999999999985 3 1 3349
Q ss_pred EEeecCceeEEEEEE--eCeeeecccEEEEcccHHHHHHHHHHHHHhc
Q 011817 246 VVNIGFQVTSVVPIL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (477)
Q Consensus 246 VVDiG~~~T~v~PV~--dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~ 291 (477)
|||+|+++|+++.+. +|.++.. .....++||+++++.+.+.++++
T Consensus 194 VvDIGgGTtDv~vi~~~~g~~v~~-~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 194 VIDVGSRTTDVLTINLMDMEPVVE-LSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp EEEECSSCEEEEEEETTTTEECGG-GCEEESCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEEEecCCEEEee-cCCCcchhHHHHHHHHHHHHHHH
Confidence 999999999999998 7876554 45778999999999988877653
No 23
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=98.87 E-value=9.5e-09 Score=102.74 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=105.4
Q ss_pred cCCCeEEEeccchHHHHhcC-----CcceEEEeecCceeEEEEEEeCee-eecccEEEEcccHHHHHHHHHHHHHhcCCC
Q 011817 221 LNVPAVCAINQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKV-MRKVGVEVMGLGALKLTGYLRLLMQQNNIN 294 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~G-----~~tglVVDiG~~~T~v~PV~dG~~-l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~ 294 (477)
+++..+.+++++++++++.+ ..+.+|||+|+++|+++.+.+|.+ +.. .....++||.++++.+.+.+.+++..
T Consensus 138 ~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~-~~~~~~lGg~~~~~~I~~~l~~~~~~ 216 (320)
T 2zgy_A 138 FTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISK-IYGDSSLGVSLVTSAVKDALSLARTK 216 (320)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEE-EEEECSCCTHHHHHHHHHHTTCCSBG
T ss_pred EEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEee-ecCCccccHHHHHHHHHHHHHHcCCC
Confidence 56678999999999998864 346799999999999999998876 443 23567999999999999998765443
Q ss_pred CCcHHHHHHH-HHhccccccchhHhhhcccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcC
Q 011817 295 FGSLYTVRTL-KEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCH 373 (477)
Q Consensus 295 ~~~~~~v~~i-Ke~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~ 373 (477)
+ +...++++ |.+...+ +..+ ...+|.. .....+ .+.+. ...+.+.|.+.+++.
T Consensus 217 i-~~~~ae~~lk~~~~~~---~~~~-------~i~~~~~--------~~~~~~-~i~~~-----~~~~~~~i~~~i~~~- 270 (320)
T 2zgy_A 217 G-SSYLADDIIIHRKDNN---YLKQ-------RINDENK--------ISIVTE-AMNEA-----LRKLEQRVLNTLNEF- 270 (320)
T ss_dssp G-GHHHHHHHHHTTTCHH---HHHH-------HSSSSCT--------HHHHHH-HHHHH-----HHHHHHHHHHHHTTC-
T ss_pred C-CHHHHHHHHHHhhhhh---cccc-------eecCchh--------hHHHHH-HHHHH-----HHHHHHHHHHHHHhh-
Confidence 3 34556766 5542100 0000 0011100 000000 01110 011223333333321
Q ss_pred CCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 374 YAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 374 ~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
.-...|+|+||+|.+ +.+.|++ .++.. . -++..+.+|.++.-+|+.++++
T Consensus 271 --------~~~~~vvl~GGga~l--l~~~l~~----~~~~~-~--~~~~~~~~P~~a~A~G~~~~~~ 320 (320)
T 2zgy_A 271 --------SGYTHVMVIGGGAEL--ICDAVKK----HTQIR-D--ERFFKTNNSQYDLVNGMYLIGN 320 (320)
T ss_dssp --------CCCCEEEEESTTHHH--HHHHHHH----TSCCC-G--GGEECCSCGGGHHHHHHHHHHC
T ss_pred --------cCCCeEEEECChHHH--HHHHHHH----HhCCC-C--CceeeCCCcHHHHHHHHHHhcC
Confidence 123679999999987 5554444 33321 0 1345567789999999998764
No 24
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.75 E-value=4.4e-09 Score=76.78 Aligned_cols=46 Identities=30% Similarity=0.519 Sum_probs=40.6
Q ss_pred ccccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHH
Q 011817 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (477)
..++.||.|++.+|+++|++.|++|++.|||.|+.++.|+.||+.+
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 4689999999999999999999999999999999999999999875
No 25
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=98.55 E-value=5.2e-08 Score=98.00 Aligned_cols=171 Identities=12% Similarity=0.040 Sum_probs=103.0
Q ss_pred CCCeEEEeccchHHHHhcC----CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHh-c-CCCC
Q 011817 222 NVPAVCAINQATLALYAAK----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-N-NINF 295 (477)
Q Consensus 222 ~vpav~~~~~~vlalya~G----~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~-~-~~~~ 295 (477)
.+..+.+.++++.++|... ..+.+|||||+++|+++.+.+|.+... .....++||.++++.+.+.+++ + +..+
T Consensus 148 ~I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~-~~~~~~~G~~~~~~~i~~~l~~~~~g~~i 226 (329)
T 4apw_A 148 EITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPS-ERFIEEHGVKDLIIRVGDALTDLNNGNLI 226 (329)
T ss_dssp EEEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHTSSSSCSSCSCT
T ss_pred EEeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeec-cccchhhHHHHHHHHHHHHHHhhccCCCC
Confidence 3567999999999998862 356799999999999999999998765 4577899999999999987776 2 2222
Q ss_pred CcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHHhhcCCC
Q 011817 296 GSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYA 375 (477)
Q Consensus 296 ~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI~~~~~~ 375 (477)
. ...++++|++ +.. ..+.. ..+. ..+. +......+.+.|.+.+++...
T Consensus 227 ~-~~~~e~i~~~-g~~------------------------~~g~~---~~~~-~~~~-i~~~~~e~~~~I~~~i~~~~~- 274 (329)
T 4apw_A 227 T-NEQAESALNN-GYM------------------------KKGGE---IDTE-SSTV-IKKVKEKFLKDAIKLIEKRGF- 274 (329)
T ss_dssp T-SBTTTTCSSS-CSS------------------------CEECT---TCCS-TTHH-HHHHHHHHHHHHHHHHHHHTC-
T ss_pred C-HHHHHHHHhc-CCc------------------------ccCCc---chhH-HHHH-HHHHHHHHHHHHHHHHHHcCC-
Confidence 1 1122222221 100 00000 0000 0000 000001233344444443311
Q ss_pred CccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 376 ELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 376 dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
+ .++...|+||||+|.+ +.+.|++++ + +++...++|.++.-.|.-.++..
T Consensus 275 ~----~~~~~~IvltGGGA~l--~~~~l~~~~----~------~~v~v~~~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 275 K----LDQLDSLIFIGGTTQK--LKEQISKTY----P------NNSIITNNSQWTTCEGLYKVAVA 324 (329)
T ss_dssp C----TTSCSEEEEESTTHHH--HHHHHHHHS----T------TCEECCSSGGGHHHHHHHHHHHH
T ss_pred C----HHHccEEEEECChHHH--HHHHHHHHc----C------CCCEecCCChhhHHHHHHHHHhh
Confidence 1 2345889999999998 446666554 2 23445667899999998777653
No 26
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=98.50 E-value=1.1e-07 Score=96.69 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=99.8
Q ss_pred CCeEEEeccchHHHHhcC-----------CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhc
Q 011817 223 VPAVCAINQATLALYAAK-----------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (477)
Q Consensus 223 vpav~~~~~~vlalya~G-----------~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~ 291 (477)
+..+.+++++++|+++.+ ..+.+|||||+++|+++.+.+|.+... ....+++||..+++.+.+.++++
T Consensus 154 I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~-~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 154 VKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEE-ESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGG-GCEEESCCHHHHHHHHHHHTC--
T ss_pred EEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccc-cccCcchHHHHHHHHHHHHHHHh
Confidence 478999999999999975 345689999999999999988888766 56779999999999999998875
Q ss_pred --CCCCCcHHHHHHHHHhccccccchhHhhhcccccceEeCCCcEEEecceeeccccccccccccccccCCHHHHHHHHH
Q 011817 292 --NINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCM 369 (477)
Q Consensus 292 --~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~yelpd~~~i~l~~er~~~~E~LF~P~~~g~~~~~L~~~I~~sI 369 (477)
+.++. . +.|++..-|.. +....++.+.+.+....+- ..+.+.|.+.|
T Consensus 233 ~~g~~l~-~---~~i~~g~~~~~--------------~~~~~~k~~di~~~i~~a~-------------~~~~~~I~~~i 281 (355)
T 3js6_A 233 SEGASIT-P---RMIEKGLEYKQ--------------CKLNQKTVIDFKDEFYKEQ-------------DSLIEEVMSNF 281 (355)
T ss_dssp ------C-H---HHHHSCCC---------------------------CHHHHHHHH-------------HHHHHHHHHHH
T ss_pred cCCCcCC-H---HHHhcCCcccc--------------ccccccccccHHHHHHHHH-------------HHHHHHHHHHH
Confidence 22222 1 12221111100 0000112223222110001 11333444444
Q ss_pred hhcCCCCccCcccccCCeEEecCCCCccc--hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 370 DHCHYAELSGDDAWFKTVILTGGSACLPG--LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 370 ~~~~~~dl~~r~~L~~NIvLtGG~S~ipG--~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
++.-. +. ....+|+|+||+|.++| +.+.|++++ | .. ++|.++.-.|..+++..
T Consensus 282 ~~~l~-~~----~~~~~Ivl~GGGa~l~~~~l~~~i~~~~----~--------~~--~~p~~anA~G~~~~~~~ 336 (355)
T 3js6_A 282 EITVG-NI----NSIDRIIVTGGGANIHFDSLSHYYSDVF----E--------KA--DDSQFSNVRGYEKLGEL 336 (355)
T ss_dssp HHHTC-CT----TSCSEEEEESTTHHHHHHHHHHHSSSCE----E--------CC--SSGGGHHHHHHHHHHHH
T ss_pred HHHhh-ch----hhccEEEEECcchhcchhhHHHHHHHHC----C--------CC--CCcHHHHHHHHHHHHHH
Confidence 44322 21 23488999999998887 555555432 1 11 67899999998888764
No 27
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=98.26 E-value=7e-06 Score=86.32 Aligned_cols=74 Identities=9% Similarity=0.065 Sum_probs=59.4
Q ss_pred ccchHHHHhcC-----CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 011817 230 NQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTL 304 (477)
Q Consensus 230 ~~~vlalya~G-----~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~i 304 (477)
-++++|.+++= ....++||+|+++|++.-+.+|..+.. ..+++||+++|..+..-|.-. +.+.+|+|
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~a---~~ip~gG~~VT~DIA~~Lg~~-----d~~~AErI 463 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITA---VHLAGAGNMVSLLIKTELGLE-----DLSLAEAI 463 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEEE---EEEECCHHHHHHHHHHHHTCS-----CHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE---EEeccchHHHHHHHHHHhCCC-----CHHHHHHh
Confidence 56777777762 245689999999999999999988764 669999999999999887742 36899999
Q ss_pred HHhccccc
Q 011817 305 KEKLCYVA 312 (477)
Q Consensus 305 Ke~~c~v~ 312 (477)
|. ++...
T Consensus 464 K~-YG~A~ 470 (607)
T 1nbw_A 464 KK-YPLAK 470 (607)
T ss_dssp HH-SCEEE
T ss_pred cc-cCcee
Confidence 99 66543
No 28
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=98.21 E-value=6.5e-06 Score=86.33 Aligned_cols=74 Identities=12% Similarity=0.044 Sum_probs=59.5
Q ss_pred ccchHHHHhcC-----CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 011817 230 NQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTL 304 (477)
Q Consensus 230 ~~~vlalya~G-----~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~~lL~~~~~~~~~~~~v~~i 304 (477)
-++++|.+++= ....++||+|+++|++.-+.+|..+.. ..+++||+++|..+..-|.-. +.+.+|+|
T Consensus 390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a---~~ip~gG~~VT~DIA~~Lgt~-----d~~~AErI 461 (610)
T 2d0o_A 390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIA---THLAGAGDMVTMIIARELGLE-----DRYLAEEI 461 (610)
T ss_dssp EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEE---EEEECSHHHHHHHHHHHHTCC-----CHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE---EEeccchHHHHHHHHHHhCCC-----CHHHHHHh
Confidence 56777777762 245689999999999999999988864 668999999999999887742 37899999
Q ss_pred HHhccccc
Q 011817 305 KEKLCYVA 312 (477)
Q Consensus 305 Ke~~c~v~ 312 (477)
|. ++...
T Consensus 462 K~-YG~A~ 468 (610)
T 2d0o_A 462 KK-YPLAK 468 (610)
T ss_dssp HH-SCEEE
T ss_pred cc-cCcee
Confidence 99 66543
No 29
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.18 E-value=1.1e-06 Score=86.57 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=48.8
Q ss_pred cccccCCCHHHHHHHHhccChhhhH-hhhccchhhhhhccchhHHHHHHhhc
Q 011817 35 LGAFDQIPWDVLIQIVKLIGPKEAA-KLCVVSKSWRALVSDNRLWIFFLQHQ 85 (477)
Q Consensus 35 ~~~~~~~p~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (477)
+..++.||.|++..|+++|.|.+++ |..+|||.||.+++|+.||+..+++.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4678999999999999999999999 99999999999999999999999886
No 30
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.67 E-value=2.4e-05 Score=79.93 Aligned_cols=50 Identities=20% Similarity=0.459 Sum_probs=47.2
Q ss_pred ccccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhhc
Q 011817 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQ 85 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (477)
-.++.||.+++.+|+++|.|.|++|++.|||.|+.++.|+.||+.++++.
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~ 66 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence 46899999999999999999999999999999999999999999988764
No 31
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.57 E-value=1.3e-05 Score=81.87 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=47.1
Q ss_pred cccCCCHH----HHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhhcC
Q 011817 37 AFDQIPWD----VLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQ 86 (477)
Q Consensus 37 ~~~~~p~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (477)
.+..||.+ ++++|+++|.+.|++|++.|||.|+.++.|+.||+.+++++.
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~ 63 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 47889999 999999999999999999999999999999999999988764
No 32
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.54 E-value=3.4e-05 Score=78.94 Aligned_cols=51 Identities=16% Similarity=0.451 Sum_probs=46.9
Q ss_pred ccccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccc-hhHHHHHHhhcC
Q 011817 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSD-NRLWIFFLQHQQ 86 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~ 86 (477)
-.+..||.+++++|+++|.|.|++|.+.|||.|+.++.| +.||+.+++++.
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~ 64 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence 357889999999999999999999999999999999998 999999987643
No 33
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.54 E-value=0.00024 Score=68.84 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=41.1
Q ss_pred cccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 382 AWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 382 ~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
...+.|+|+||.+..|++.++|++++. .+++.|+++.+..-+||+++|.
T Consensus 205 ~~~~~vvl~GGva~n~~lr~~l~~~~g----------~~~~~p~~p~~~~A~GAAl~A~ 253 (276)
T 4ehu_A 205 GVQRNVVMVGGVARNSGIVRAMAREIN----------TEIIVPDIPQLTGALGAALYAF 253 (276)
T ss_dssp CCCSSEEEESGGGGCHHHHHHHHHHHT----------SCEECCSSGGGHHHHHHHHHHH
T ss_pred ccCCeEEEecCccchHHHHHHHHHHHC----------CCeeeCCCcchHHHHHHHHHHH
Confidence 345789999999999999999998874 4567778888888899999873
No 34
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=96.85 E-value=0.0036 Score=60.72 Aligned_cols=55 Identities=29% Similarity=0.434 Sum_probs=41.1
Q ss_pred cCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCccccc
Q 011817 384 FKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAW 448 (477)
Q Consensus 384 ~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~w 448 (477)
.+.|+++||.++.+++.+++.+.|. .+|..++.+.+..-+||+++|....-...|
T Consensus 209 ~~~i~~~GG~a~n~~~~~~~~~~lg----------~~v~~p~~~~~~~AlGAAl~A~~~~~~~~~ 263 (270)
T 1hux_A 209 VKDVVMTGGVAQNYGVRGALEEGLG----------VEIKTSPLAQYNGALGAALYAYKKAAKSAW 263 (270)
T ss_dssp CSSEEEESGGGGCHHHHHHHHHHHC----------SCEECCGGGGGHHHHHHHHHHHHHTTC---
T ss_pred CCeEEEeCccccCHHHHHHHHHHHC----------CCeEeCCCcchHhHHHHHHHHHHhhhcccc
Confidence 4679999999999999999999885 345666667777889999998643234445
No 35
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.79 E-value=0.00046 Score=67.88 Aligned_cols=45 Identities=31% Similarity=0.516 Sum_probs=42.2
Q ss_pred ccccCCCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHH
Q 011817 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIF 80 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 80 (477)
..++.||.|++.+|+++|...|++|.+.+|+.|+.++.|+.+|+.
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~ 51 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence 568999999999999999999999999999999999999888764
No 36
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=95.55 E-value=0.3 Score=47.68 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCC-ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC-LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~-ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|..+|.+.+..+++ + .|||.||.+. .+-|.+++++.+...........+++..+.....++-+||+.++
T Consensus 250 L~~~i~~l~~~l~p-~---------~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~ 319 (326)
T 2qm1_A 250 LGLATGNLGNTLNP-D---------SVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLA 319 (326)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCC-C---------EEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHH
Confidence 45555555555554 2 3888888875 56788889888887644311113556555445667889988876
Q ss_pred c
Q 011817 440 N 440 (477)
Q Consensus 440 s 440 (477)
-
T Consensus 320 ~ 320 (326)
T 2qm1_A 320 L 320 (326)
T ss_dssp G
T ss_pred H
Confidence 3
No 37
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=95.46 E-value=0.08 Score=52.37 Aligned_cols=61 Identities=25% Similarity=0.108 Sum_probs=44.0
Q ss_pred cCCCeEEEeccc---hHHHHh----cC-CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHHH
Q 011817 221 LNVPAVCAINQA---TLALYA----AK-RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (477)
Q Consensus 221 ~~vpav~~~~~~---vlalya----~G-~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L~ 285 (477)
.|++ +-++... .++..| .+ ..+++|||||+++|.++-.-+|.+... ...++|+..+++.+.
T Consensus 110 ~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~~---~Sl~~G~v~l~e~~~ 178 (315)
T 1t6c_A 110 VGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVREV---ISLPIGIVNLTETFF 178 (315)
T ss_dssp TCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEEEE---EEECCCHHHHHHHHC
T ss_pred HCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCceeeE---EEEeccHHHHHHHhc
Confidence 7774 5555433 333222 23 567999999999999999888887643 679999999998763
No 38
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=95.38 E-value=0.96 Score=44.26 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCc-cchHHHHHHHHHhcCC-CCCCCceEEeCCCCCcchhhhhhHHh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL-PGLAERLEKELRGLLP-SSISNGIRVIPPPYGADTAWFGAKLV 438 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~i-pG~~eRL~~EL~~l~p-~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (477)
|...|.+.+..+++ + .|||.||.+.. +-|.++|++.+.+... ......++|....-...+.-+||+.+
T Consensus 240 La~~i~~l~~~l~p-~---------~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l 309 (321)
T 3vgl_A 240 AGAGLADLASLFDP-S---------AFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADL 309 (321)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-C---------EEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHH
Confidence 45556566555555 2 37888888765 4468888888887664 22233467776665677888998877
Q ss_pred hc
Q 011817 439 GN 440 (477)
Q Consensus 439 as 440 (477)
+.
T Consensus 310 ~~ 311 (321)
T 3vgl_A 310 AR 311 (321)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 39
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=94.74 E-value=0.26 Score=48.57 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=43.1
Q ss_pred cCCCeEEEec---cchHHHHhc----C--CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHH
Q 011817 221 LNVPAVCAIN---QATLALYAA----K--RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (477)
Q Consensus 221 ~~vpav~~~~---~~vlalya~----G--~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L 284 (477)
.|++ +-++. ++-++.+|. . ..+++|||||.++|.++-+-+|.+... ...++|...+++.+
T Consensus 102 tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~f 170 (315)
T 3mdq_A 102 VNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEILWK---QSFEIGGQRLIDRF 170 (315)
T ss_dssp HCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEEEE---EEESCCHHHHHHHS
T ss_pred HCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEeee---EEEechhhHHHHHh
Confidence 7774 55554 333333332 2 356899999999999999988887653 67899999888754
No 40
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=94.59 E-value=0.066 Score=52.28 Aligned_cols=72 Identities=13% Similarity=0.016 Sum_probs=49.7
Q ss_pred CHHHHHHHHHhhcCCCCccCcccccCCeEEecC-CCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 011817 360 GLDQAVALCMDHCHYAELSGDDAWFKTVILTGG-SACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (477)
Q Consensus 360 ~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG-~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (477)
+|..+|.+.|..+.. -...+..+ ++|+++|| .+..|++.++|.+.+... +.+++.+++++|..-+||+++
T Consensus 215 sl~~sV~~~I~~la~-~~a~~~~i-~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-------~~~~~~p~~~~~~gAlGAaL~ 285 (287)
T 2ews_A 215 AVIGVVGEVVTTMAI-TVAREFKT-ENIVYIGSSFHNNALLRKVVEDYTVLR-------GCKPYYVENGAFSGAIGALYL 285 (287)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHTTC-CEEEEESGGGTTCHHHHHHHHHHHHHT-------TCEEEECTTGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCC-CeEEEeCCchhcCHHHHHHHHHHHhhC-------CceEEECCCccHHHHHHHHHh
Confidence 566666665533321 00001222 47999999 999999999999876542 267787888999999999987
Q ss_pred hc
Q 011817 439 GN 440 (477)
Q Consensus 439 as 440 (477)
++
T Consensus 286 ~~ 287 (287)
T 2ews_A 286 EK 287 (287)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 41
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=94.49 E-value=0.13 Score=54.26 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=42.8
Q ss_pred cCCCeEEEec---cchHHHHhc----CCcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHH
Q 011817 221 LNVPAVCAIN---QATLALYAA----KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY 283 (477)
Q Consensus 221 ~~vpav~~~~---~~vlalya~----G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~ 283 (477)
.|++ +-++. ++-++..|. ....++|||||+++|.++-+-+|.+... ...++|.-.+++.
T Consensus 113 tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~ 178 (508)
T 3hi0_A 113 LGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGEG---ITLPLGGLRLSEQ 178 (508)
T ss_dssp HTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEECCC---EEESCCHHHHHHH
T ss_pred HCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeeeeE---EEecceEEehhhc
Confidence 7774 55554 333333332 3456899999999999999988887643 6789999988874
No 42
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=94.18 E-value=2.3 Score=40.97 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (477)
|...|.+.+.-+++ + .|||.||.+..+.|.++|++.+...... .++|....-...+.-+||+.++-
T Consensus 225 La~~i~~l~~~~~p-~---------~IvlgGgi~~~~~~~~~l~~~l~~~~~~----~~~i~~s~lg~~a~~~GAa~l~~ 290 (297)
T 4htl_A 225 ICTGLYNLIYLFDP-T---------HIFIGGGITSRPTFIAELKHHMESFGLR----DTIIETATHKNQAGLLGAVYHFL 290 (297)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEESGGGGSTTHHHHHHHHHTTTCCT----TCEEEECSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-C---------EEEEeCcccccHHHHHHHHHHHHHhccC----CCeEEECCcCChHHHHhHHHHHH
Confidence 45555565555555 2 3899999988888999999998765432 35666665566788899887653
No 43
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=94.03 E-value=0.098 Score=51.93 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=23.8
Q ss_pred cceEEEeecCceeEEEEEEeCeeeec
Q 011817 242 TSGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
.++++||||..+|+|+||.+|.++..
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~g 152 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVAE 152 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECCC
T ss_pred CCEEEEEcCcchhhhhhhcCCeeccc
Confidence 67999999999999999999999754
No 44
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=93.78 E-value=0.18 Score=50.40 Aligned_cols=62 Identities=24% Similarity=0.252 Sum_probs=41.7
Q ss_pred cCCCeEEEec---cchHHHHhc----C----CcceEEEeecCceeEEEEEEe--Ceee--ecccEEEEcccHHHHHHHH
Q 011817 221 LNVPAVCAIN---QATLALYAA----K----RTSGIVVNIGFQVTSVVPILH--GKVM--RKVGVEVMGLGALKLTGYL 284 (477)
Q Consensus 221 ~~vpav~~~~---~~vlalya~----G----~~tglVVDiG~~~T~v~PV~d--G~~l--~~~~~~~~~vGG~~lt~~L 284 (477)
.|++ +-++. ++.++..|. . ...++|||||+++|.++-+.+ +.+. .. ....+++|+..+++.+
T Consensus 115 tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~-~~~SlplG~v~lt~~~ 191 (343)
T 3cer_A 115 LGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQ-GAFSMNIGSVRMTERH 191 (343)
T ss_dssp HSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCS-EEEEESCCHHHHHHHT
T ss_pred HCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccc-eeEEEehhHHHHHHHh
Confidence 6764 45554 444544443 2 256899999999999998766 3321 01 2467899999999876
No 45
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=93.62 E-value=0.43 Score=50.36 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=42.5
Q ss_pred cCCCeEEEecc---chHHHHhc----C-CcceEEEeecCceeEEEEEEeCeeeecccEEEEcccHHHHHHHH
Q 011817 221 LNVPAVCAINQ---ATLALYAA----K-RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (477)
Q Consensus 221 ~~vpav~~~~~---~vlalya~----G-~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~vGG~~lt~~L 284 (477)
.|++ +-++.. +-++..|. . ...++|||||+++|.++-.-+|.+.. ....++|...+++.+
T Consensus 109 tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~---~~Sl~lG~vrlte~f 176 (513)
T 1u6z_A 109 IPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL---VESRRMGCVSFAQLY 176 (513)
T ss_dssp CSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEEE---EEEESCCHHHHHHHH
T ss_pred HCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeeeE---EEEEeccHHHHHHHH
Confidence 7774 555543 33333332 1 23699999999999999887777754 367999999998765
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=92.76 E-value=0.043 Score=57.91 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=32.2
Q ss_pred cccCCCHHHHHHHHhccC-hhhhHhhhccchhhhhhccchhHHH
Q 011817 37 AFDQIPWDVLIQIVKLIG-PKEAAKLCVVSKSWRALVSDNRLWI 79 (477)
Q Consensus 37 ~~~~~p~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~ 79 (477)
.++.||.||+.+|+++|. +.|++|.+++||.|+.+ +...|+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~--~~~~~~ 46 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI--ERWCRR 46 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH--HHHHCC
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh--hhhhce
Confidence 478999999999999999 99999999999999998 444443
No 47
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=92.66 E-value=0.93 Score=44.38 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCc-cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL-PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~i-pG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|...|.+.+..+++ + .|||.||.+.. +-|.++|++++.+........++++........+.-+||+.++
T Consensus 248 La~~i~~l~~~ldP-~---------~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~ 317 (321)
T 3r8e_A 248 IGESLVNIVRVMDL-N---------NILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLI 317 (321)
T ss_dssp HHHHHHHHHHHHCC-C---------EEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-C---------EEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 45555555555554 2 37888888765 6688888888887664322223677766666778889998875
No 48
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=92.59 E-value=7.7 Score=37.36 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCC-Cc-cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA-CL-PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S-~i-pG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (477)
|...|.+.+..+++ + .|||.||.+ .. +-|.++|++++.+....... .++..+.-...++-+||+.+
T Consensus 225 l~~~i~~l~~~~~p-~---------~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~--~~i~~s~lg~~a~~~GAa~l 292 (302)
T 3vov_A 225 VGIGLASLVKAFDP-G---------VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEA--PPLRRARLGAEAGLLGAALT 292 (302)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCC--CCEEECSSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-C---------EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcC--CcEEEcCCCCcHHHHHHHHH
Confidence 45555555555555 2 378888877 55 55899999999887654333 22444444567888898877
Q ss_pred h
Q 011817 439 G 439 (477)
Q Consensus 439 a 439 (477)
+
T Consensus 293 ~ 293 (302)
T 3vov_A 293 A 293 (302)
T ss_dssp H
T ss_pred H
Confidence 5
No 49
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=92.25 E-value=2.9 Score=42.56 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=35.1
Q ss_pred cCCCeEEEeccchHHHHhc-------CCcceEEEeecCceeEEEEEEeCeeeec
Q 011817 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------G~~tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
+++| +++.+++-+++++- +..+.++|-+|.+ .-..-|.+|.++..
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 259 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIVLDGRVLQG 259 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECCT
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEEECCEEeeC
Confidence 7888 88999998887763 4578899999987 44666778887653
No 50
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=92.21 E-value=0.84 Score=45.84 Aligned_cols=75 Identities=8% Similarity=-0.087 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHhhcCCCCccCcccccCCeEEecC-CCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHH
Q 011817 359 MGLDQAVALCMDHCHYAELSGDDAWFKTVILTGG-SACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKL 437 (477)
Q Consensus 359 ~~L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG-~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsi 437 (477)
.+|..+|.+.|-.... +..++.=.++|+++|| .+..|++.+.|++.|.-.-.. +++++.+++++|..-+||.+
T Consensus 283 ~gll~sVa~~I~~lA~--l~A~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g----~~~~~~~~~~~y~GAlGAaL 356 (360)
T 2i7n_A 283 RATLVTITNNIGSIAR--MCALNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG----QLKALFLEHEGYFGAVGALL 356 (360)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT----SCCEEEETTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC----CeeEEEcCCccHHHHHHHHH
Confidence 3566777666554421 0002222357999999 999999999999998632111 24566566779999999988
Q ss_pred hh
Q 011817 438 VG 439 (477)
Q Consensus 438 la 439 (477)
++
T Consensus 357 ~~ 358 (360)
T 2i7n_A 357 EL 358 (360)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 51
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=91.62 E-value=6 Score=39.79 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=35.0
Q ss_pred cCCCeEEEeccchHHHHhc-------CCcceEEEeecCceeEEEEEEeCeeeec
Q 011817 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------G~~tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
|++| +++.+++-+++++- +..+.++|-+|.+ .-..-|.+|.++..
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~G 237 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVITDGHLLHA 237 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEETTT
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEEECCEEeec
Confidence 7888 88899998887763 3578899999987 45666789987653
No 52
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=91.10 E-value=1.4 Score=42.30 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=36.2
Q ss_pred cCCCeEEEeccchHHHHhc-----CCcceEEEeecCceeEEEEEEeCeeeec
Q 011817 221 LNVPAVCAINQATLALYAA-----KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~-----G~~tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
|++| +++.+++-+++++- +..+.++|-+|.+. -..-|.+|.++..
T Consensus 94 ~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtGi-G~giv~~G~l~~G 143 (292)
T 2gup_A 94 YQLP-VHLENDANCVGLSELLAHPELENAACVVIGTGI-GGAMIINGRLHRG 143 (292)
T ss_dssp GCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSSE-EEEEEETTEEECC
T ss_pred cCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCce-EEEEEECCEEEec
Confidence 8988 88999999998883 56789999999874 4666779988754
No 53
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=90.76 E-value=8.8 Score=37.50 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=34.4
Q ss_pred cCCCeEEEeccchHHHHhc-------CCcceEEEeecCceeEEEEEEeCeeee
Q 011817 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMR 266 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------G~~tglVVDiG~~~T~v~PV~dG~~l~ 266 (477)
+++| +.+.+++-+++++- +..+.++|-+|.+ .-..-|.+|.+..
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii~~G~l~~ 181 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGIIHQHELIH 181 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEEECCEEec
Confidence 7887 88899998887763 3568899999987 4566677988765
No 54
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=90.40 E-value=5.3 Score=38.81 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=34.9
Q ss_pred cCCCeEEEeccchHHHHhc-------CCcceEEEeecCceeEEEEEEeCeeeec
Q 011817 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------G~~tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
+++| +.+.+++-+++++- +..+.++|-+|.+. -..-|.+|.+...
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtGi-G~giv~~G~l~~G 171 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVLNGKPITG 171 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSSE-EEEEEETTEEECC
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCcE-EEEEEECCEEeec
Confidence 7888 89999999988863 35688999999874 4566779988764
No 55
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=90.24 E-value=1.3 Score=44.30 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=24.7
Q ss_pred cceEEEeecCceeEEEEEEe--CeeeecccEEEEcccHH
Q 011817 242 TSGIVVNIGFQVTSVVPILH--GKVMRKVGVEVMGLGAL 278 (477)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~d--G~~l~~~~~~~~~vGG~ 278 (477)
.+.+|||+|+++|.++-..+ +.+... ....+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~-~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKH-NQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGG-GEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCC-ceEEEEECCc
Confidence 46999999999999987644 333322 2455677764
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=84.94 E-value=0.32 Score=51.23 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHhcc-ChhhhHhhhccchhhhhh
Q 011817 40 QIPWDVLIQIVKLI-GPKEAAKLCVVSKSWRAL 71 (477)
Q Consensus 40 ~~p~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~ 71 (477)
.||.|++.+|+++| .+.|+++.+++||-|+.+
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 69999999999999 899999999999999988
No 57
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=83.92 E-value=5 Score=38.15 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|..+|.+.+..+++ + .|||.||.+..+-|.+++++++.+.... . .+++..+.....++-+||+.++
T Consensus 221 L~~~i~~l~~~l~p-~---------~ivlgG~~~~~~~~~~~l~~~l~~~~~~-~--~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 221 LARLIADIKATTDC-Q---------CVVVGGSVGLAEGYLALVETYLAQEPAA-F--HVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEEHHHHTSTTHHHHHHHHHTTSCGG-G--CCEEEECSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-C---------EEEEeCcccccHHHHHHHHHHHHHhcCc-c--CCEEEECCCCCchHHHHHHHHH
Confidence 45555555555554 2 3889998877788999999998875321 1 2555555445667888998775
No 58
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=78.50 E-value=9.9 Score=39.21 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhh--cCCCeEEEeccchHH-------HHhcCC------cceEEEeecCceeEEEEEEeCe
Q 011817 207 RRQLKDCFQQVLFD--LNVPAVCAINQATLA-------LYAAKR------TSGIVVNIGFQVTSVVPILHGK 263 (477)
Q Consensus 207 R~~~~e~l~e~lFE--~~vpav~~~~~~vla-------lya~G~------~tglVVDiG~~~T~v~PV~dG~ 263 (477)
++.+.+.+.+.+-+ |.+..+.++...-=+ -|..|. .+..|||+|+++|+|+=..++.
T Consensus 131 ~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~~~~ 202 (452)
T 3zx3_A 131 ADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGASTQITFVPLNS 202 (452)
T ss_dssp HHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHHHHHHTTTTC---CCCCEEEEECSSEEEEEECCSSC
T ss_pred HHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHHHHhhhccccCCCCCceEEEecCCCceEEEeccCCC
Confidence 34555555555432 333567776643222 333352 5677899999999998665543
No 59
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=75.61 E-value=23 Score=33.72 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=15.6
Q ss_pred EEEeCCcceEEEEEecCC
Q 011817 128 VIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (477)
++||+|..++|.|+-.++
T Consensus 3 L~IDIGNT~ik~gl~~~~ 20 (268)
T 2h3g_X 3 FVLDVGNTNAVLGVFEEG 20 (268)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred EEEEECcCcEEEEEEECC
Confidence 789999999999987544
No 60
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=75.36 E-value=14 Score=38.03 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=18.5
Q ss_pred cceEEEeecCceeEEEEEEeCe
Q 011817 242 TSGIVVNIGFQVTSVVPILHGK 263 (477)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~ 263 (477)
.+..|+|+|+++|+|+-..+..
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4679999999999999876654
No 61
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=73.20 E-value=34 Score=32.05 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=16.1
Q ss_pred eEEEeCCcceEEEEEecCC
Q 011817 127 SVIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~ 145 (477)
-++||+|..++|+|+-.++
T Consensus 5 ~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 5 YLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEECSSEEEEEEESSS
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 3889999999999987544
No 62
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=68.40 E-value=36 Score=32.28 Aligned_cols=19 Identities=26% Similarity=0.073 Sum_probs=16.3
Q ss_pred eEEEeCCcceEEEEEecCC
Q 011817 127 SVIIDGGSGYCKFGWSKYD 145 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~ 145 (477)
-++||+|..++|+|.-.++
T Consensus 4 lL~IDIGNT~iK~gl~d~~ 22 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGD 22 (266)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4899999999999987554
No 63
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=64.01 E-value=9.7 Score=37.09 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|...|.+.+..+++ + .|||.||.+..+-|.++|++++.+...... .+++|....-...+.-+||+.++
T Consensus 257 La~~i~~l~~~l~p-~---------~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~-~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 257 LAICFGNIFTANDP-H---------VVALGGGLSNFELIYEEMPKRVPKYLLSVA-KCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp HHHHHHHHHHHHCC-S---------EEEEESGGGGCTHHHHHHHHHGGGGSCTTC-CCCEEEECSCGGGHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-C---------EEEEeCcccchHHHHHHHHHHHHHHhcccc-CCCEEEECCCCCcHHHHHHHHHH
Confidence 44555555555555 2 388999988888888889888887654322 24667666656678889998875
No 64
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=63.72 E-value=94 Score=29.23 Aligned_cols=128 Identities=14% Similarity=0.014 Sum_probs=68.3
Q ss_pred eEEEeCCcceEEEEEecCCCCCcccccccccCCccC-hHHHHHHHHHHHHhhhcccCCCC-CCeEEEecCCCCCCccchH
Q 011817 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIES-PMYSRLRHFFATIYSRMQVKPST-QPIVVSIPICHYDDTENAK 204 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~~-Pi~~~l~~~~~~i~~~L~v~p~~-~pVll~ep~~~~~~t~~~~ 204 (477)
.+-||+|...||++... +. +........-.+... ...+.++.+.+.+-+.++..+.+ ..|-+..|-..+
T Consensus 2 ~lgiDiGGT~~~~~l~d-~g-~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~~igig~pG~~~------- 72 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EG-KSLGRFQTSGINPFQQDRNEIDTALRSEVLPAIGQKASSIRAVYFYGAGCTP------- 72 (291)
T ss_dssp EEEEEECSSEEEEEEEE-TT-EEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHHTTSTTTCCEEEEEETTCCT-------
T ss_pred EEEEEeCccceEEEEEe-CC-eEEEEEECCCCCcccCCHHHHHHHHHHHHHHHhCCCcccccEEEEECCCCCh-------
Confidence 47899999999999875 31 111111000011111 11222332222221222222222 125555554321
Q ss_pred HhHHHHHHHHHHHHhhcCC-CeEEEeccchHHHHh-cCCcceEEEeecCceeEEEEEEeCeeee
Q 011817 205 ASRRQLKDCFQQVLFDLNV-PAVCAINQATLALYA-AKRTSGIVVNIGFQVTSVVPILHGKVMR 266 (477)
Q Consensus 205 ~~R~~~~e~l~e~lFE~~v-pav~~~~~~vlalya-~G~~tglVVDiG~~~T~v~PV~dG~~l~ 266 (477)
.....+.+.+.+. +++ -.+.+.+++.+++++ .|..++++|=+|.+.--..-+.+|+...
T Consensus 73 ~~~~~l~~~l~~~---~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~~ 133 (291)
T 1zbs_A 73 AKAPMLNEALDSM---LPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKAN 133 (291)
T ss_dssp TTHHHHHHHHHHH---STTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEEE
T ss_pred HHHHHHHHHHHHh---cCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEEE
Confidence 1112344444443 775 359999999999998 4778899999998875444456888764
No 65
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=56.72 E-value=1.4e+02 Score=28.55 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=66.6
Q ss_pred eEEEeCCcceEEEEEecCCCCCcccccccccCCc--cC--hHHHHHHHHHHHHhhhcccCCC-C-CCeEEEecCCCCCCc
Q 011817 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNI--ES--PMYSRLRHFFATIYSRMQVKPS-T-QPIVVSIPICHYDDT 200 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~--~~--Pi~~~l~~~~~~i~~~L~v~p~-~-~pVll~ep~~~~~~t 200 (477)
.+.||+|...+|++....+.- ..........+. .. .+++.+...++.+.+..+.++. + ..|-+..|-...
T Consensus 8 ~lgiDiGgt~~~~~l~d~~g~-i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~vd--- 83 (347)
T 2ch5_A 8 YGGVEGGGTRSEVLLVSEDGK-ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQ--- 83 (347)
T ss_dssp EEEEEECTTCEEEEEEETTSC-EEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTC---
T ss_pred EEEEEcCccceEEEEEeCCCC-EEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCCc---
Confidence 688999999999998754321 111110000011 01 1234444444444444444432 1 235555654321
Q ss_pred cchHHhHHHHHHHHHHHHhhcC---CCeEEEeccchHHHHhcCCcceEEEeecCceeEEEEEEeCee
Q 011817 201 ENAKASRRQLKDCFQQVLFDLN---VPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKV 264 (477)
Q Consensus 201 ~~~~~~R~~~~e~l~e~lFE~~---vpav~~~~~~vlalya~G~~tglVVDiG~~~T~v~PV~dG~~ 264 (477)
......+.+.+.+. ++ .| +.+.+++-+++++....++++|-+|.+.-...-..+|..
T Consensus 84 ---~~~~~~l~~~l~~~---~~~~~~p-v~v~NDa~aaa~a~~~~~~v~v~~GTGig~~~v~~~G~~ 143 (347)
T 2ch5_A 84 ---EDAGRILIEELRDR---FPYLSES-YLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSE 143 (347)
T ss_dssp ---HHHHHHHHHHHHHH---CTTSBSC-EEEEEHHHHHHHHHCSSCEEEEEESSSEEEEEECTTSCE
T ss_pred ---hHHHHHHHHHHHHh---cCCCCce-EEEECcHHHHHHhhCCCCcEEEEEcCCceeEEEcCCCCE
Confidence 11122333444443 65 54 888999999988864467888989887644322225543
No 66
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=56.51 E-value=15 Score=35.30 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCccchHHHHHHHHHhcCCCCCC-------CceEEeCCCCCcchhhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSIS-------NGIRVIPPPYGADTAWF 433 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~-------~~v~v~~~~~~~~~aW~ 433 (477)
|...|.+.+.-+++ | .|||.||.+..+-|-+++++++.+....... .++.+..+.-...+.-+
T Consensus 212 La~~i~nl~~~ldP-e---------~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~ 281 (302)
T 3epq_A 212 IAQALAQYILILAP-X---------XIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGII 281 (302)
T ss_dssp HHHHHHHHHHHTCC-S---------CEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHH
T ss_pred HHHHHHHHHHHHCc-h---------hhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHH
Confidence 56666676666666 3 3788888887766888888888776533211 02346666656778889
Q ss_pred hhHHhh
Q 011817 434 GAKLVG 439 (477)
Q Consensus 434 Ggsila 439 (477)
||+.++
T Consensus 282 GAa~l~ 287 (302)
T 3epq_A 282 GTLVLA 287 (302)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 67
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=46.97 E-value=25 Score=34.83 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCCc-cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL-PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~i-pG~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (477)
|...|.+.+..+++ + .|||.||.+.. +-|.+++++.+....... ..++|........++-+||+.++
T Consensus 302 La~~i~~l~~~ldP-~---------~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~--~~~~i~~s~~~~~a~~~GAa~l~ 369 (380)
T 2hoe_A 302 FSIGLLNLIHLFGI-S---------KIVIGGFFKELGENFLKKIKIEVETHLLYK--HSVDMSFSKVQEPVIAFGAAVHA 369 (380)
T ss_dssp HHHHHHHHHHHHCC-C---------EEEEEEGGGGGHHHHHHHHHHHHHHHCSSS--CCCEEEECCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-C---------EEEEcCchhhhhHHHHHHHHHHHHHhcCCC--CCcEEEEcCCCCcHHHHHHHHHH
Confidence 45555555555554 2 38888888754 668888888887765432 23566555444567888988775
No 68
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=46.58 E-value=1.2e+02 Score=29.90 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=35.6
Q ss_pred CeEEecCCCCccc-hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 386 TVILTGGSACLPG-LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 386 NIvLtGG~S~ipG-~~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
.|||+||.+...- |.+++.+++.... ++.|........+.-+||..++.-
T Consensus 298 ~IvlgGgi~~~~~~l~~~i~~~l~~~~------~~~i~~~~~~~~a~~~GAa~l~~~ 348 (381)
T 1saz_A 298 FIVLTGGLAHEKEFLVPWITKRVSFIA------PVLVFPGSNEEKALALSALRVLRG 348 (381)
T ss_dssp EEEEEEGGGGCTTTHHHHHHHHHTTTS------CEEEEEBCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCcCccChHHHHHHHHHHHHhhc------CeEEEecCcchhHHHHHHHHHHcC
Confidence 4899999887655 8899999887653 256665544445777898877643
No 69
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=46.40 E-value=47 Score=31.86 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=40.1
Q ss_pred eEEecCCCCccc-hHHHHHHHHHhcCCC-CCCCceEEeCCCCCcchhhhhhHHhhcCCCcccc
Q 011817 387 VILTGGSACLPG-LAERLEKELRGLLPS-SISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGA 447 (477)
Q Consensus 387 IvLtGG~S~ipG-~~eRL~~EL~~l~p~-~~~~~v~v~~~~~~~~~aW~Ggsilasl~~f~~~ 447 (477)
|||.||.+..+. +.++|.+.+++.+.. ....++++....-...+.-+||+.++--.-|.+.
T Consensus 243 IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~~~~~~~p 305 (310)
T 3htv_A 243 VILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQF 305 (310)
T ss_dssp EEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHHHHHCC--
T ss_pred EEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHHHHhhccc
Confidence 788888887654 477888888776532 1122467776665678899999988754444443
No 70
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=45.90 E-value=1.7e+02 Score=27.46 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=67.4
Q ss_pred eEEEeCCcceEEEEEecCCCCCcccccccccCCcc-Ch--HHHHHHHHHHHHhhhcccCCCCC---CeEEEecCCCCCCc
Q 011817 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIE-SP--MYSRLRHFFATIYSRMQVKPSTQ---PIVVSIPICHYDDT 200 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~-~P--i~~~l~~~~~~i~~~L~v~p~~~---pVll~ep~~~~~~t 200 (477)
.+.||+|...+|++....+. +..........+.. .| +++.+...++.+.+..+.++.+- .+-+..|-...
T Consensus 13 ~lGiDiGgT~i~~~l~d~~G-~il~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~igig~pG~v~--- 88 (305)
T 1zc6_A 13 LIGVDGGGTGTRIRLHASDG-TPLAMAEGGASALSQGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVHN--- 88 (305)
T ss_dssp EEEEEECSSCEEEEEEETTC-CEEEEEEESCCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCCT---
T ss_pred EEEEEcCccceEEEEEcCCC-CEEEEEeCCCCCcccCHHHHHHHHHHHHHHHHHhcCCChhhhccceEEEEecCCCc---
Confidence 68899999999999875432 11111000001111 11 23444445554445445444432 24555554321
Q ss_pred cchHHhHHHHHHHHHHHHhhc--CCCeEEEeccchHHHHhc-CCcceEEEeecCceeEEEEEEeCeeee
Q 011817 201 ENAKASRRQLKDCFQQVLFDL--NVPAVCAINQATLALYAA-KRTSGIVVNIGFQVTSVVPILHGKVMR 266 (477)
Q Consensus 201 ~~~~~~R~~~~e~l~e~lFE~--~vpav~~~~~~vlalya~-G~~tglVVDiG~~~T~v~PV~dG~~l~ 266 (477)
+...+ . +.+. + ++ -+.+.+++-+++++. +..++++|-+|.+..-..-+.+|....
T Consensus 89 --~~~~~----~-l~~~---~~~~~-pv~v~NDa~aaa~ge~~~~~~v~v~~GTGigg~~i~~~G~~~~ 146 (305)
T 1zc6_A 89 --RQWAG----E-FESQ---APGFA-RLSLATDGYTTLLGAHGGQPGIIVALGTGSIGEALYPDGSHRE 146 (305)
T ss_dssp --TSHHH----H-HHHT---CCCCS-EEEEECHHHHHHHHHTTTSSEEEEEESSSEEEEEECTTSCEEE
T ss_pred --hHHHH----H-HHHh---CCCCc-eEEEECCHHHHHHhhcCCCCeEEEEecCCeEEEEEeCCCcEEE
Confidence 11111 1 2111 5 44 489999999999884 567889999998874333233787653
No 71
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=43.73 E-value=8.8 Score=30.87 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=28.1
Q ss_pred CCHHHHHHHHhccChhhhHhhhccchhhhhhccchhHHHHHHhhcCCCCc
Q 011817 41 IPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEPWD 90 (477)
Q Consensus 41 ~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 90 (477)
.|.+++--|+...+|..+.|+=-.|.. -+-..+.||+.|+.+|-+.+.
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~~ 60 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEER 60 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCcccC
Confidence 488999999999999999999999983 467889999999999987653
No 72
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=39.89 E-value=13 Score=25.57 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.5
Q ss_pred ccccCCCHHHHHHHHhccC
Q 011817 36 GAFDQIPWDVLIQIVKLIG 54 (477)
Q Consensus 36 ~~~~~~p~~~~~~i~~~~~ 54 (477)
--|.+||+|+|.-|++--.
T Consensus 19 eVF~~LP~dIQ~Ells~~~ 37 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSGKS 37 (48)
T ss_dssp GGTTTSCHHHHHHHTTCCC
T ss_pred HHHHHCcHHHHHHHHhcch
Confidence 4599999999999886543
No 73
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=39.35 E-value=1.2e+02 Score=29.88 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=34.5
Q ss_pred cCCCeEEEeccchHHHHhc---C--CcceEEEeecCceeEEEEEEeCeeeec
Q 011817 221 LNVPAVCAINQATLALYAA---K--RTSGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~---G--~~tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
|++| +++.+++-+++++- | +.+.++|-+|.+. -..-|.+|.++..
T Consensus 188 ~~~p-V~v~NDanaaalaE~~~g~~~~~~v~l~~GtGi-G~giv~~G~l~~G 237 (380)
T 2hoe_A 188 YGIE-VWVENDADMGAVGEKWYTKRDDSFAWILTGKGI-GAGIIIDGELYRG 237 (380)
T ss_dssp HCSE-EEEEEHHHHHHHHHHHHTTCCSCEEEEEESSSC-EEEEEETTEECCC
T ss_pred hCCC-EEEechHHHHHHHHHHhCCCCCcEEEEEeCCce-EEEEEECCEEecc
Confidence 7887 88999998887763 3 3789999999874 4666778887653
No 74
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=36.71 E-value=2.8e+02 Score=26.33 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=34.4
Q ss_pred cCCCeEEEeccchHHHHhc-------CCcceEEEeecCceeEEEEEEeCeeeec
Q 011817 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------G~~tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
|++| |++.+++-+++++- +..+.++|-+|.+ .-..-|.+|.++..
T Consensus 120 ~~~p-V~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~G 171 (327)
T 4db3_A 120 IGRS-VKIENDANCFALSEAWDEELQDAPSVMGLILGTG-FGGGLIYEGKVFSG 171 (327)
T ss_dssp HSSC-CEEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSS-EEEEEEETTEECCC
T ss_pred HCCC-EEEecchhHHHHHHHHhCCCCCCCcEEEEEeCcc-ceEEEEECCEEeec
Confidence 8898 89999999888764 3567889999987 44555778887653
No 75
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=33.57 E-value=80 Score=29.99 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=15.2
Q ss_pred eEEEeCCcceEEEEEec
Q 011817 127 SVIIDGGSGYCKFGWSK 143 (477)
Q Consensus 127 ~VVID~GS~~~K~Gfag 143 (477)
-++||+|..++|+|.-.
T Consensus 25 ~L~IDiGNT~ik~g~~~ 41 (271)
T 2f9w_A 25 ILELDCGNSLIKWRVIE 41 (271)
T ss_dssp EEEEEECSSCEEEEEEE
T ss_pred EEEEEeCCCeeEEEEEe
Confidence 49999999999999865
No 76
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=32.39 E-value=37 Score=32.79 Aligned_cols=75 Identities=11% Similarity=0.017 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCCCCccCcccccCCeEEecCCCC-ccchHHHHHHHHHhcC--CCCC-CCceEEeCCCCCcchhhhhhH
Q 011817 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC-LPGLAERLEKELRGLL--PSSI-SNGIRVIPPPYGADTAWFGAK 436 (477)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~L~~NIvLtGG~S~-ipG~~eRL~~EL~~l~--p~~~-~~~v~v~~~~~~~~~aW~Ggs 436 (477)
|...|.+.+..+++ +... ..--..|||.||.+. .+-|.+++++.+.+.. +... ..++.+... .. ++-+||.
T Consensus 245 La~~i~~l~~~~~p-~~~~-~~~~~~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~-a~~~GAa 319 (347)
T 2ch5_A 245 LGRHIVAVLPEIDP-VLFQ-GKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKL--RH-SSALGGA 319 (347)
T ss_dssp HHHHHHHHGGGSCG-GGGC-STTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEE--SS-CTHHHHH
T ss_pred HHHHHHHHHHHhcc-cccc-cCCCceEEEECCcccCcHHHHHHHHHHHHhhccccccccCCceEEEec--CC-ChHHHHH
Confidence 55666666666665 3210 000014788888764 3667888888887764 2221 112333332 24 7778988
Q ss_pred Hhhc
Q 011817 437 LVGN 440 (477)
Q Consensus 437 ilas 440 (477)
.++-
T Consensus 320 ~la~ 323 (347)
T 2ch5_A 320 SLGA 323 (347)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 77
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=28.81 E-value=73 Score=31.10 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=23.2
Q ss_pred cCCeEEecCCCCccchHHHHHHHHHh
Q 011817 384 FKTVILTGGSACLPGLAERLEKELRG 409 (477)
Q Consensus 384 ~~NIvLtGG~S~ipG~~eRL~~EL~~ 409 (477)
.++|+++||.++-..+.++|.+++..
T Consensus 250 ~~~vvlsGGVa~N~~L~~~L~~~l~~ 275 (334)
T 3eno_A 250 KDEILMAGGVALNRRLRDMVTNMARE 275 (334)
T ss_dssp CSEEEEESSGGGCHHHHHHHHHHHHH
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999864
No 78
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=28.07 E-value=62 Score=33.22 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=40.0
Q ss_pred CeEEecCCCCccchHHHHHHHHHhcCCCCC----CCceEEeCCCCCcchhhhhhHHhhcC
Q 011817 386 TVILTGGSACLPGLAERLEKELRGLLPSSI----SNGIRVIPPPYGADTAWFGAKLVGNL 441 (477)
Q Consensus 386 NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~----~~~v~v~~~~~~~~~aW~Ggsilasl 441 (477)
.|.+-||....|+|.+++++.+..+++... ..+|++....+ .+=+||+++|.+
T Consensus 386 ~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~d---gsg~GAAl~aa~ 442 (457)
T 2yhx_A 386 HIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAID---GXGAASXVIXSI 442 (457)
T ss_dssp EEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECCC---TTTHHHHHHHHH
T ss_pred EEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceEEEECCC---chhhhHHHHHHH
Confidence 577888887789999999999998875422 22477766543 677899998865
No 79
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=27.67 E-value=65 Score=31.95 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.5
Q ss_pred ceEEEeecCceeEEEEEEeCeeeec
Q 011817 243 SGIVVNIGFQVTSVVPILHGKVMRK 267 (477)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~~l~~ 267 (477)
+.++|.+|.+. ....|.+|+++..
T Consensus 177 ~~v~~~lGtGi-G~g~i~~G~~~~G 200 (381)
T 1saz_A 177 NLVVAHMGGGI-SIAAHRKGRVIDV 200 (381)
T ss_dssp EEEEEEESSSE-EEEEEETTEEEEE
T ss_pred CEEEEEeCCCc-EEEEEECCEEEEe
Confidence 88999999865 6777889998764
No 80
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=24.42 E-value=36 Score=34.07 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred CCeEEecCCCCccchHHHHHHHH
Q 011817 385 KTVILTGGSACLPGLAERLEKEL 407 (477)
Q Consensus 385 ~NIvLtGG~S~ipG~~eRL~~EL 407 (477)
..|++|||++.-|-|.+||++.|
T Consensus 285 ~~v~vcGGGa~N~~Lm~~L~~~l 307 (371)
T 3qbx_A 285 EEVLVCGGGAFNTALMKRLAMLM 307 (371)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHC
T ss_pred ceEEEECCccCcHHHHHHHHHhC
Confidence 35899999999999999998776
No 81
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=23.60 E-value=51 Score=31.07 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=28.1
Q ss_pred cCCCeEEEeccchHHHHhcC-CcceEEEeecCceeEEEEEEeCe
Q 011817 221 LNVPAVCAINQATLALYAAK-RTSGIVVNIGFQVTSVVPILHGK 263 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya~G-~~tglVVDiG~~~T~v~PV~dG~ 263 (477)
+++| +.+.+++-+++++.. ..++++|-+|.+. |.+|+
T Consensus 86 ~~~p-v~v~ND~~aaa~~e~~~~~~v~l~~GTG~-----i~~g~ 123 (299)
T 2e2o_A 86 IAPK-VIIQHDGVIALFAETLGEPGVVVIAGTGS-----VVEGY 123 (299)
T ss_dssp SSSE-EEEEEHHHHHHHHHHTTSCEEEEEESSSE-----EEEEE
T ss_pred CCCC-EEEeCcHHHHHhhccCCCCeEEEEecCCE-----EEEEE
Confidence 5654 788889988888763 5788999999983 55665
No 82
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=23.19 E-value=74 Score=30.86 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=27.8
Q ss_pred cCCeEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCC
Q 011817 384 FKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPP 425 (477)
Q Consensus 384 ~~NIvLtGG~S~ipG~~eRL~~EL~~l~p~~~~~~v~v~~~~ 425 (477)
.++|+++||.++-..+.++|.+++... +++++.++
T Consensus 245 ~~~vvlsGGVa~N~~l~~~l~~~l~~~-------g~~v~~p~ 279 (330)
T 2ivn_A 245 KDEVVLVGGVAANNRLREMLRIMTEDR-------GIKFFVPP 279 (330)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHHH-------TCEEECCC
T ss_pred CCeEEEEccHHHHHHHHHHHHHHHHHc-------CCEEEecC
Confidence 468999999999999999999988643 14566554
No 83
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=20.89 E-value=52 Score=32.36 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=32.8
Q ss_pred cCCCeEEEeccchHHHHh----------------c--------------C----CcceEEEeecCceeEEEEEEeCeeee
Q 011817 221 LNVPAVCAINQATLALYA----------------A--------------K----RTSGIVVNIGFQVTSVVPILHGKVMR 266 (477)
Q Consensus 221 ~~vpav~~~~~~vlalya----------------~--------------G----~~tglVVDiG~~~T~v~PV~dG~~l~ 266 (477)
+++.-+.+.++.-+++++ . | ..+.++|-+|.+.- ..-|.+|.+..
T Consensus 127 ~~~~pv~v~NDa~aaalge~~l~~~~~~~~~~~E~~~~~~~~~~~~~~~g~~~~~~~~~~v~~GTGiG-~gii~~g~l~~ 205 (373)
T 2q2r_A 127 FPPGHSAILNDLEAGGFGVLAVSDAHVFSEYFGVMWEGTQWRTCEQEPAGSVIGRGRCLVLAPGTGLG-SSLIYYNPPMN 205 (373)
T ss_dssp SCTTSEEEEEHHHHHHHHHHHHHHTTCHHHHEEEEECCTTTTTTCSSCTTSSCCSSCEEEEEESSSEE-EEEEEECC---
T ss_pred cCCCCEEEEccHhHHhccccccChhhhccccchhhcccccccccccCCCcCcCCCCCEEEEEeCCcee-EEEEecCcccC
Confidence 777458999999999988 2 3 26789999998754 55567887665
Q ss_pred c
Q 011817 267 K 267 (477)
Q Consensus 267 ~ 267 (477)
.
T Consensus 206 G 206 (373)
T 2q2r_A 206 Q 206 (373)
T ss_dssp C
T ss_pred C
Confidence 3
Done!