BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011820
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 123/284 (43%), Gaps = 46/284 (16%)
Query: 140 ENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLV 199
+N +L+ L ++N G TG IP +L + +L SL L N LSG +P++LG LS L+ L
Sbjct: 387 QNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 200 VSGNWLNGRIPDSFGYLSELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPK 259
+ N L G IP Y+ L L LSNN+L G+IPK
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 260 EIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVI- 318
IG L+N+ +L L NN FSG + L + SL + + N G + + +K +
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 319 -------LDLSNTGL------AGEVPEFMA----ELKRLR-------------------- 341
+ + N G+ AG + EF +L RL
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 342 -------FLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGEL 378
FL +S N L+G I ++ +MP + L L N++SG +
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 29/242 (11%)
Query: 157 LTGPIPTSLGHL-MKLRSLVLLENGLSGELPTNLGR--LSNLKKLVVSGNWLNGRIPDSF 213
+G +P SL +L L +L L N SG + NL + + L++L + N G+IP +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 214 GYLSELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYLKNITLLDLR 273
SEL+ L LS N L G IP +G L + L L
Sbjct: 412 SNCSELVSLH------------------------LSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 274 NNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEF 333
N GE+ + L + +LE ++ N + G++ S N NL + LSN L GE+P++
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 334 MAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFY-GKMGRRF 392
+ L+ L L LSNN +G I +L + L LN N +G + + + GK+ F
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Query: 393 GA 394
A
Sbjct: 567 IA 568
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 118/294 (40%), Gaps = 50/294 (17%)
Query: 157 LTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYL 216
L G IP L ++ L +L+L N L+GE+P+ L +NL + +S N L G IP G L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 217 SELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIP-----------------K 259
L IL DL+ N G IP K
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 260 EIGYLKN-----------------------ITLLDLRN------NKFSGELTKSLQEMYS 290
Y+KN + L RN + G + + S
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 291 LEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKL 350
+ + S N + G + E ++ L IL+L + ++G +P+ + +L+ L L LS+NKL
Sbjct: 631 MMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 351 TGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLC-YP 403
G I ++ + ++ + L+ NNLSG + F +F NNP LC YP
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF--LNNPGLCGYP 741
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 101/241 (41%), Gaps = 40/241 (16%)
Query: 146 LESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWL 205
LE L+ SN TG IP LG L+ L + N LSG+ + + LK L +S N
Sbjct: 199 LEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 206 NGRIP----DSFGYLSELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEI 261
G IP S YLS L+ N+ G+IP +
Sbjct: 257 VGPIPPLPLKSLQYLS------------------------------LAENKFTGEIPDFL 286
Query: 262 -GYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILD 320
G +T LDL N F G + LE + S+N G+L ++ L +LD
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 346
Query: 321 LSNTGLAGEVPEFMAELK-RLRFLGLSNNKLTGTISPKLATMP--CVSALYLNGNNLSGE 377
LS +GE+PE + L L L LS+N +G I P L P + LYL N +G+
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 378 L 378
+
Sbjct: 407 I 407
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 123/284 (43%), Gaps = 46/284 (16%)
Query: 140 ENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLV 199
+N +L+ L ++N G TG IP +L + +L SL L N LSG +P++LG LS L+ L
Sbjct: 390 QNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 200 VSGNWLNGRIPDSFGYLSELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPK 259
+ N L G IP Y+ L L LSNN+L G+IPK
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 260 EIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVI- 318
IG L+N+ +L L NN FSG + L + SL + + N G + + +K +
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 319 -------LDLSNTGL------AGEVPEFMA----ELKRLR-------------------- 341
+ + N G+ AG + EF +L RL
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 342 -------FLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGEL 378
FL +S N L+G I ++ +MP + L L N++SG +
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 110/242 (45%), Gaps = 29/242 (11%)
Query: 157 LTGPIPTSLGHL-MKLRSLVLLENGLSGELPTNLGR--LSNLKKLVVSGNWLNGRIPDSF 213
+G +P SL +L L +L L N SG + NL + + L++L + N G+IP +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 214 GYLSELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYLKNITLLDLR 273
SEL+ L LS N L G IP +G L + L L
Sbjct: 415 SNCSELVSLH------------------------LSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 274 NNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEF 333
N GE+ + L + +LE ++ N + G++ S N NL + LSN L GE+P++
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 334 MAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFY-GKMGRRF 392
+ L+ L L LSNN +G I +L + L LN N +G + + + GK+ F
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Query: 393 GA 394
A
Sbjct: 570 IA 571
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 118/294 (40%), Gaps = 50/294 (17%)
Query: 157 LTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYL 216
L G IP L ++ L +L+L N L+GE+P+ L +NL + +S N L G IP G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 217 SELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIP-----------------K 259
L IL DL+ N G IP K
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 260 EIGYLKN-----------------------ITLLDLRN------NKFSGELTKSLQEMYS 290
Y+KN + L RN + G + + S
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 291 LEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKL 350
+ + S N + G + E ++ L IL+L + ++G +P+ + +L+ L L LS+NKL
Sbjct: 634 MMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 351 TGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLC-YP 403
G I ++ + ++ + L+ NNLSG + F +F NNP LC YP
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF--LNNPGLCGYP 744
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 101/241 (41%), Gaps = 40/241 (16%)
Query: 146 LESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWL 205
LE L+ SN TG IP LG L+ L + N LSG+ + + LK L +S N
Sbjct: 202 LEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 206 NGRIP----DSFGYLSELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEI 261
G IP S YLS L+ N+ G+IP +
Sbjct: 260 VGPIPPLPLKSLQYLS------------------------------LAENKFTGEIPDFL 289
Query: 262 -GYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILD 320
G +T LDL N F G + LE + S+N G+L ++ L +LD
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 321 LSNTGLAGEVPEFMAELK-RLRFLGLSNNKLTGTISPKLATMP--CVSALYLNGNNLSGE 377
LS +GE+PE + L L L LS+N +G I P L P + LYL N +G+
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 378 L 378
+
Sbjct: 410 I 410
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 26/198 (13%)
Query: 157 LTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYL 216
++G IP L + L +L N LSG LP ++ L NL + GN ++G IPDS+G
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 217 SELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNK 276
S+L +S N+L GKIP L N+ +DL N
Sbjct: 173 SKLF-----------------------TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208
Query: 277 FSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAE 336
G+ + + +++ + N + DL + +NL LDL N + G +P+ + +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--KNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 337 LKRLRFLGLSNNKLTGTI 354
LK L L +S N L G I
Sbjct: 267 LKFLHSLNVSFNNLCGEI 284
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 313 LQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGN 372
L L L +++T ++G +P+F++++K L L S N L+GT+ P ++++P + + +GN
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 373 NLSGELQFSEWFYGKMGRRF 392
+SG + S YG + F
Sbjct: 160 RISGAIPDS---YGSFSKLF 176
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 319 LDLSNTGLAGE--VPEFMAELKRLRFLGLSN-NKLTGTISPKLATMPCVSALYLNGNNLS 375
LDLS L +P +A L L FL + N L G I P +A + + LY+ N+S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 376 GEL 378
G +
Sbjct: 115 GAI 117
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 140/337 (41%), Gaps = 74/337 (21%)
Query: 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAG--SLESLEFRSNPGLTGPIP 162
F Q+ ++ LK+L+ N S IS L+G SL+ L F SN +T P
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-----ISDISALSGLTSLQQLSFSSN-QVTDLKP 168
Query: 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222
L +L L L + N +S + L +L+NL+ L+ + N ++ P G L+ L
Sbjct: 169 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL--- 219
Query: 223 DXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYL---KNITLLDLRNNKFS- 278
+ L+ NQL K+IG L N+T LDL NN+ S
Sbjct: 220 ---------------------DELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 253
Query: 279 ----GELTKSLQEMYSLEEMVFSNNPIGG--DLKSLEW-----------KNLQNLVILDL 321
LTK L E+ + + +P+ G L +LE NL+NL L L
Sbjct: 254 LAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 312
Query: 322 SNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381
++ P ++ L +L+ L SNNK++ S LA + ++ L N +S +
Sbjct: 313 YFNNISDISP--VSSLTKLQRLFFSNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA 368
Query: 382 EWF-YGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVK 417
++G AW N + Y + + IP VK
Sbjct: 369 NLTRITQLGLNDQAWTNAPVNYKANV----SIPNTVK 401
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 139/337 (41%), Gaps = 74/337 (21%)
Query: 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAG--SLESLEFRSNPGLTGPIP 162
F Q+ ++ LK+L+ N S IS L+G SL+ L F SN +T P
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-----ISDISALSGLTSLQQLNFSSN-QVTDLKP 168
Query: 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222
L +L L L + N +S + L +L+NL+ L+ + N ++ P G L+ L
Sbjct: 169 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL--- 219
Query: 223 DXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYL---KNITLLDLRNNKFS- 278
+ L+ NQL K+IG L N+T LDL NN+ S
Sbjct: 220 ---------------------DELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 253
Query: 279 ----GELTKSLQEMYSLEEMVFSNNPIGG--DLKSLEW-----------KNLQNLVILDL 321
LTK L E+ + + +P+ G L +LE NL+NL L L
Sbjct: 254 LAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 312
Query: 322 SNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381
++ P ++ L +L+ L NNK++ S LA + ++ L N +S +
Sbjct: 313 YFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA 368
Query: 382 EWF-YGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVK 417
++G AW N + Y + + IP VK
Sbjct: 369 NLTRITQLGLNDQAWTNAPVNYKANV----SIPNTVK 401
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 139/337 (41%), Gaps = 74/337 (21%)
Query: 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAG--SLESLEFRSNPGLTGPIP 162
F Q+ ++ LK+L+ N S IS L+G SL+ L F SN +T P
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-----ISDISALSGLTSLQQLSFSSN-QVTDLKP 168
Query: 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222
L +L L L + N +S + L +L+NL+ L+ + N ++ P G L+ L
Sbjct: 169 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL--- 219
Query: 223 DXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYL---KNITLLDLRNNKFS- 278
+ L+ NQL K+IG L N+T LDL NN+ S
Sbjct: 220 ---------------------DELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 253
Query: 279 ----GELTKSLQEMYSLEEMVFSNNPIGG--DLKSLEW-----------KNLQNLVILDL 321
LTK L E+ + + +P+ G L +LE NL+NL L L
Sbjct: 254 LAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 312
Query: 322 SNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381
++ P ++ L +L+ L NNK++ S LA + ++ L N +S +
Sbjct: 313 YFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA 368
Query: 382 EWF-YGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVK 417
++G AW N + Y + + IP VK
Sbjct: 369 NLTRITQLGLNDQAWTNAPVNYKANV----SIPNTVK 401
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 246 FDLSNNQLEGKIP-KEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGG- 303
DL N++E K+ +E L+NI + L NK+ T S + SL+ ++ +
Sbjct: 410 LDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNV 469
Query: 304 DLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKL 350
D+ ++ L+NL ILDLSN +A + + L+ L L +N L
Sbjct: 470 DISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 25/136 (18%)
Query: 193 SNLKKLVVSGNWLNGRIPDSFGYLSELLILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQ 252
SN+ L ++ N L P +F S+L ILD S ++
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFN---------------------SISK 63
Query: 253 LEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKN 312
LE ++ + + LK +L+L++N+ S ++ +L E+ +N I +KS +KN
Sbjct: 64 LEPELCQILPLLK---VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHK-IKSNPFKN 119
Query: 313 LQNLVILDLSNTGLAG 328
+NL+ LDLS+ GL+
Sbjct: 120 QKNLIKLDLSHNGLSS 135
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 268 TLLDLRNNKFSGELTKSLQEM----YSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSN 323
T D+ + S + K L EM +L+E FS D+ S ++ L LDL+
Sbjct: 231 TFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFS------DISSTTFQCFTQLQELDLTA 284
Query: 324 TGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGN 372
T L G +P M L L+ L LS N A P ++ LY+ GN
Sbjct: 285 THLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 246 FDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFS--GELTKSLQEMYSLEEMVFSNNPIGG 303
D SNN L + + G+L + L L+ N+ ++ + +M SL+++ S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 304 DLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPC 363
D K + ++L+ L++S+ L + F R++ L L +NK+ +I ++ +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPRIKVLDLHSNKI-KSIPKQVVKLEA 445
Query: 364 VSALYLNGNNLSG 376
+ L + N L
Sbjct: 446 LQELNVASNQLKS 458
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%)
Query: 265 KNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNT 324
+N+T+L L +N +G + + LE++ S+N + ++ L +L L L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 325 GLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNL 374
GL P L L++L L +N L + ++ L+L+GN +
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 257 IPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNL 316
+PKE+ K++TL+DL NN+ S +S M L ++ S N + + + L++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 317 VILDLSNTGLAGEVPE-FMAELKRLRFLGLSNNKL 350
+L L ++ VPE +L L L + N L
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 137/337 (40%), Gaps = 75/337 (22%)
Query: 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAG--SLESLEFRSNPGLTGPIP 162
F Q+ ++ LK+L+ N S IS L+G SL+ L F + P
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-----ISDISALSGLTSLQQLNFGNQVTDLKP-- 167
Query: 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222
L +L L L + N +S + L +L+NL+ L+ + N ++ P G L+ L
Sbjct: 168 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL--- 218
Query: 223 DXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYL---KNITLLDLRNNKFS- 278
+ L+ NQL K+IG L N+T LDL NN+ S
Sbjct: 219 ---------------------DELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 252
Query: 279 ----GELTKSLQEMYSLEEMVFSNNPIGG--DLKSLEW-----------KNLQNLVILDL 321
LTK L E+ + + +P+ G L +LE NL+NL L L
Sbjct: 253 LAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 311
Query: 322 SNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381
++ P ++ L +L+ L SNNK++ S LA + ++ L N +S +
Sbjct: 312 YFNNISDISP--VSSLTKLQRLFFSNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA 367
Query: 382 EWF-YGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVK 417
++G AW N + Y + + IP VK
Sbjct: 368 NLTRITQLGLNDQAWTNAPVNYKANV----SIPNTVK 400
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 112 LKHLKSLSFFNCFTS------SQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSL 165
LK LKS SF N F+ S+ TI W L L +L NP + P S
Sbjct: 39 LKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNP-IQSFSPGSF 95
Query: 166 GHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNG-RIPDSFGYLSELLILD 223
L L +LV +E L+ +G+L LKKL V+ N+++ ++P F L+ L+ +D
Sbjct: 96 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 154
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 112 LKHLKSLSFFNCFTS------SQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSL 165
LK LKS SF N F+ S+ TI W L L +L NP + P S
Sbjct: 44 LKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNP-IQSFSPGSF 100
Query: 166 GHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNG-RIPDSFGYLSELLILD 223
L L +LV +E L+ +G+L LKKL V+ N+++ ++P F L+ L+ +D
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 18/87 (20%)
Query: 281 LTKSLQEMYSLEEMVFSNNPIGGDL------------------KSLEWKNLQNLVILDLS 322
++K++Q + L+ + F+N+P D + L W NL++L ++L
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499
Query: 323 NTGLAGEVPEFMAELKRLRFLGLSNNK 349
N ++P+F+ +L L+ L ++ N+
Sbjct: 500 NCPNXTQLPDFLYDLPELQSLNIACNR 526
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%)
Query: 248 LSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKS 307
L N++ +N+T+L L +N + + + LE++ S+N +
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 308 LEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSAL 367
+ L L L L GL P L L++L L +N L + ++ L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 368 YLNGNNLS 375
+L+GN +S
Sbjct: 158 FLHGNRIS 165
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 137/337 (40%), Gaps = 75/337 (22%)
Query: 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAG--SLESLEFRSNPGLTGPIP 162
F Q+ ++ LK+L+ N S IS L+G SL+ L F + P
Sbjct: 119 FNNQITDIDPLKNLTNLNRLELSSNT-----ISDISALSGLTSLQQLSFGNQVTDLKP-- 171
Query: 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222
L +L L L + N +S + L +L+NL+ L+ + N ++ P G L+ L
Sbjct: 172 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL--- 222
Query: 223 DXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYL---KNITLLDLRNNKFS- 278
+ L+ NQL K+IG L N+T LDL NN+ S
Sbjct: 223 ---------------------DELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 256
Query: 279 ----GELTKSLQEMYSLEEMVFSNNPIGG--DLKSLEW-----------KNLQNLVILDL 321
LTK L E+ + + +P+ G L +LE NL+NL L L
Sbjct: 257 LAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 315
Query: 322 SNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381
++ P ++ L +L+ L +NNK++ S LA + ++ L N +S +
Sbjct: 316 YFNNISDISP--VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA 371
Query: 382 EWF-YGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVK 417
++G AW N + Y + + IP VK
Sbjct: 372 NLTRITQLGLNDQAWTNAPVNYKANV----SIPNTVK 404
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%)
Query: 248 LSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKS 307
L N++ +N+T+L L +N + + + LE++ S+N +
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 308 LEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSAL 367
+ L L L L GL P L L++L L +N L + ++ L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 368 YLNGNNLS 375
+L+GN +S
Sbjct: 159 FLHGNRIS 166
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 257 IPKEIGYLKNITLLDLRNNKFSGELTKS----LQEMYSLEEMVFSNNPIGGDLKSLEWKN 312
+PKEI + TLLDL+NN S EL K LQ +Y+L V NN I + +
Sbjct: 48 VPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYAL---VLVNNKI-SKIHEKAFSP 100
Query: 313 LQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCV 364
L+ L L +S L P + L LR K+ + L M C+
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Query: 252 QLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWK 311
+LE ++ +++ LK +L+L++N+ S K+ +L E+ +N I +K+ +
Sbjct: 63 KLEPELCQKLPMLK---VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFV 118
Query: 312 NLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMP--CVSALYL 369
+NL+ LDLS+ GL+ +L+ L+ L LSNNK+ S +L + L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 370 NGNNLSGELQFSEWFYGKMGRRFGAWNN 397
+ N + +FS + +GR FG + N
Sbjct: 179 SSNQIK---EFSPGCFHAIGRLFGLFLN 203
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Query: 252 QLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWK 311
+LE ++ +++ LK +L+L++N+ S K+ +L E+ +N I +K+ +
Sbjct: 73 KLEPELCQKLPMLK---VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFV 128
Query: 312 NLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMP--CVSALYL 369
+NL+ LDLS+ GL+ +L+ L+ L LSNNK+ S +L + L L
Sbjct: 129 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 188
Query: 370 NGNNLSGELQFSEWFYGKMGRRFGAWNN 397
+ N + +FS + +GR FG + N
Sbjct: 189 SSNQIK---EFSPGCFHAIGRLFGLFLN 213
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 9/148 (6%)
Query: 252 QLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWK 311
+LE ++ +++ LK +L+L++N+ S K+ +L E+ +N I +K+ +
Sbjct: 68 KLEPELCQKLPMLK---VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFV 123
Query: 312 NLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMP--CVSALYL 369
+NL+ LDLS+ GL+ +L+ L+ L LSNNK+ S +L + L L
Sbjct: 124 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 183
Query: 370 NGNNLSGELQFSEWFYGKMGRRFGAWNN 397
+ N + +FS + +GR FG + N
Sbjct: 184 SSNQIK---EFSPGCFHAIGRLFGLFLN 208
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 136/337 (40%), Gaps = 75/337 (22%)
Query: 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAG--SLESLEFRSNPGLTGPIP 162
F Q+ ++ LK+L+ N S IS L+G SL+ L F + P
Sbjct: 120 FNNQITDIDPLKNLTNLNRLELSSNT-----ISDISALSGLTSLQQLSFGNQVTDLKP-- 172
Query: 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222
L +L L L + N +S + L +L+NL+ L+ + N ++ P G L+ L
Sbjct: 173 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL--- 223
Query: 223 DXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYL---KNITLLDLRNNKFS- 278
+ L+ NQL K+IG L N+T LDL NN+ S
Sbjct: 224 ---------------------DELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 257
Query: 279 ----GELTKSLQEMYSLEEMVFSNNPIGG--DLKSLEW-----------KNLQNLVILDL 321
LTK L E+ + + +P+ G L +LE NL+NL L L
Sbjct: 258 LAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316
Query: 322 SNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381
++ P ++ L +L+ L NNK++ S LA + ++ L N +S +
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA 372
Query: 382 EWF-YGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVK 417
++G AW N + Y + + IP VK
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANV----SIPNTVK 405
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 136/337 (40%), Gaps = 75/337 (22%)
Query: 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAG--SLESLEFRSNPGLTGPIP 162
F Q+ ++ LK+L+ N S IS L+G SL+ L F + P
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNT-----ISDISALSGLTSLQQLNFGNQVTDLKP-- 167
Query: 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222
L +L L L + N +S + L +L+NL+ L+ + N ++ P G L+ L
Sbjct: 168 --LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL--- 218
Query: 223 DXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYL---KNITLLDLRNNKFS- 278
+ L+ NQL K+IG L N+T LDL NN+ S
Sbjct: 219 ---------------------DELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISN 252
Query: 279 ----GELTKSLQEMYSLEEMVFSNNPIGG--DLKSLEW-----------KNLQNLVILDL 321
LTK L E+ + + +P+ G L +LE NL+NL L L
Sbjct: 253 LAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 311
Query: 322 SNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381
++ P ++ L +L+ L NNK++ S LA + ++ L N +S +
Sbjct: 312 YFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLA 367
Query: 382 EWF-YGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVK 417
++G AW N + Y + + IP VK
Sbjct: 368 NLTRITQLGLNDQAWTNAPVNYKANV----SIPNTVK 400
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 264 LKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSN 323
LK++ +L+L NK + ++ + +L+ + S N +G +L S + L + +DL
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQK 347
Query: 324 TGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNL 374
+A + L++L+ L L +N LT + +P + ++L+GN L
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 27/95 (28%)
Query: 256 KIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQN 315
K+PK++ + LLDL+NNK + ++K ++KNL+N
Sbjct: 45 KVPKDLP--PDTALLDLQNNKIT-------------------------EIKDGDFKNLKN 77
Query: 316 LVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKL 350
L L L N ++ P A L +L L LS N+L
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 245 KFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGD 304
+ DLSNNQ+ P L+++ L L NK + EL KSL E +++ N
Sbjct: 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINX 118
Query: 305 LKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNN 348
L+ +++L NL +L L + L + L+ ++ + L+ N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 27/95 (28%)
Query: 256 KIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQN 315
K+PK++ + LLDL+NNK + ++K ++KNL+N
Sbjct: 45 KVPKDLP--PDTALLDLQNNKIT-------------------------EIKDGDFKNLKN 77
Query: 316 LVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKL 350
L L L N ++ P A L +L L LS N+L
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 245 KFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGD 304
+ DLSNNQ+ P L+++ L L NK + EL KSL E +++ N
Sbjct: 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC 118
Query: 305 LKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNN 348
L+ +++L NL +L L + L + L+ ++ + L+ N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 63/106 (59%), Gaps = 10/106 (9%)
Query: 264 LKNITLLDLRNNKF-SGELTKS--LQEMYSLEEMVFSN-NPIGGDLKSLEWKNLQNLVIL 319
L+++ L+L+ N F G ++K+ LQ + SLE ++ S+ N + D ++ + L+N+ L
Sbjct: 447 LQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQA--FHGLRNVNHL 504
Query: 320 DLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVS 365
DLS+ L G+ + ++ LK L +L +++N + I P L +P +S
Sbjct: 505 DLSHNSLTGDSMDALSHLKGL-YLNMASNNIR-IIPPHL--LPALS 546
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 245 KFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNN----- 299
K DL +N+L K L + LL L +NK +E+ +LE + ++N
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 300 PIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKL 350
PIG + L NL L L L P L +L +L L N+L
Sbjct: 101 PIGV------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Query: 163 TSLGHLMKLRSLVLLENGLSGELPTNL-GRLSNLKKLVVSGNWLNGRIPDS-FGYLSELL 220
++L L L L+L N L LP + +L+NLK+LV+ N L +PD F L+ L
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLT 136
Query: 221 ILDXXXXXXXXXXXXXXXXXXXXXKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGE 280
L + DL NNQL+ L + L L +N+
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 281 LTKSLQEMYSLEEMVFSNNP 300
+ SL + NNP
Sbjct: 197 PDGVFDRLTSLTHIWLLNNP 216
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%)
Query: 189 LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDXXXXXXXXXXXXXXXXXXXXXKFDL 248
GRL +L KL + N L G P++F S + L +L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 249 SNNQLEGKIPKEIGYLKNITLLDLRNNKFS 278
+NQ+ +P +L ++T L+L +N F+
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 254 EGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNL 313
E +P L+N+T LDL + + + SL+ + S+N L + +K L
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 541
Query: 314 QNLVILDLS-NTGLAGEVPEFMAELKRLRFLGLSNNKLTGT 353
+L +LD S N + + E L FL L+ N T
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%)
Query: 264 LKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSN 323
L+N+ LD+ + + SLE + + N + + L+NL LDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 324 TGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGN 372
L P L L+ L +++N+L + + ++L+ N
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 254 EGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNL 313
E +P L+N+T LDL + + + SL+ + S+N L + +K L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCL 517
Query: 314 QNLVILDLS-NTGLAGEVPEFMAELKRLRFLGLSNNKLTGT 353
+L +LD S N + + E L FL L+ N T
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 152 RSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPD 211
+ + G IP+ L +K SL L N ++ ++L R NL+ LV++ N +N D
Sbjct: 37 KGSSGSLNSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 212 SFGYLSELLILD 223
SF L L LD
Sbjct: 95 SFSSLGSLEHLD 106
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 268 TLLDLRNNKFS---GELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNT 324
LLDL +N S E T + + +L ++ S+N + + S + + NL LDLS+
Sbjct: 42 ALLDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSN 98
Query: 325 GLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375
L ++L+ L L L NN + M + LYL+ N +S
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 152 RSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPD 211
+ + G IP+ L +K SL L N ++ ++L R NL+ LV++ N +N D
Sbjct: 11 KGSSGSLNSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 68
Query: 212 SFGYLSELLILD 223
SF L L LD
Sbjct: 69 SFSSLGSLEHLD 80
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 277 FSGELTKSLQEMYSLEEMVFS--NNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFM 334
FSG SLQ++ +LE + S N PIG LK+L+ N+ + +I ++PE+
Sbjct: 98 FSG--LSSLQKLVALETNLASLENFPIG-HLKTLKELNVAHNLIQSF-------KLPEYF 147
Query: 335 AELKRLRFLGLSNNKLTGTISPKLATM 361
+ L L L LS+NK+ L +
Sbjct: 148 SNLTNLEHLDLSSNKIQSIYCTDLRVL 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,615,299
Number of Sequences: 62578
Number of extensions: 563886
Number of successful extensions: 1531
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 245
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)