Query 011820
Match_columns 477
No_of_seqs 702 out of 4851
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.2E-42 1.3E-46 387.8 29.7 317 37-379 28-349 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.9E-35 1.5E-39 330.4 22.0 270 102-382 106-376 (968)
3 KOG4194 Membrane glycoprotein 99.9 3.2E-28 6.9E-33 242.4 2.2 286 107-403 143-455 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.3E-27 2.8E-32 238.0 2.8 253 144-398 149-403 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.5E-27 5.4E-32 237.4 -6.2 263 103-381 45-334 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1E-26 2.2E-31 233.0 -2.0 283 103-403 93-378 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.5E-25 7.5E-30 212.3 -8.5 253 103-375 58-310 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 9.2E-25 2E-29 209.4 -9.0 264 113-399 45-309 (565)
9 PRK15387 E3 ubiquitin-protein 99.8 1.7E-20 3.8E-25 201.4 14.3 234 104-382 215-465 (788)
10 PLN03210 Resistant to P. syrin 99.8 4.7E-19 1E-23 202.8 21.0 224 144-381 634-888 (1153)
11 PLN03210 Resistant to P. syrin 99.8 7.3E-19 1.6E-23 201.3 20.4 249 105-373 626-904 (1153)
12 PRK15370 E3 ubiquitin-protein 99.8 1.1E-19 2.3E-24 196.3 12.4 223 114-375 179-401 (754)
13 cd00116 LRR_RI Leucine-rich re 99.8 2E-20 4.3E-25 185.5 5.9 193 106-302 16-234 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 2E-20 4.3E-25 185.5 4.2 254 117-377 2-293 (319)
15 PRK15370 E3 ubiquitin-protein 99.8 2.8E-19 6.1E-24 193.1 12.7 227 113-376 199-429 (754)
16 KOG0618 Serine/threonine phosp 99.8 3.5E-21 7.6E-26 201.6 -2.2 220 144-373 241-487 (1081)
17 KOG4237 Extracellular matrix p 99.8 7.3E-21 1.6E-25 182.5 -0.5 256 114-378 68-362 (498)
18 KOG0618 Serine/threonine phosp 99.8 9.4E-21 2E-25 198.4 -1.7 242 113-372 241-510 (1081)
19 PRK15387 E3 ubiquitin-protein 99.8 3.3E-18 7.1E-23 183.9 14.8 241 113-400 201-458 (788)
20 KOG4237 Extracellular matrix p 99.7 4.5E-19 9.7E-24 170.3 0.6 240 104-351 81-359 (498)
21 KOG0617 Ras suppressor protein 99.7 3.9E-19 8.5E-24 152.8 -5.0 181 167-378 31-215 (264)
22 KOG0617 Ras suppressor protein 99.7 4.2E-19 9.1E-24 152.7 -5.9 178 217-401 33-213 (264)
23 PLN03150 hypothetical protein; 99.5 2.8E-14 6.1E-19 153.4 12.9 81 157-237 430-510 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 2.6E-14 5.7E-19 143.5 -1.1 181 168-359 74-254 (722)
25 COG4886 Leucine-rich repeat (L 99.4 6.7E-13 1.4E-17 135.8 6.7 198 148-356 97-295 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 5.8E-14 1.3E-18 141.0 -2.5 196 111-325 73-271 (722)
27 PLN03150 hypothetical protein; 99.3 2.6E-12 5.7E-17 138.2 9.3 113 290-403 419-531 (623)
28 COG4886 Leucine-rich repeat (L 99.3 1.9E-12 4.1E-17 132.5 6.9 197 173-379 97-294 (394)
29 KOG1909 Ran GTPase-activating 99.2 2.1E-12 4.6E-17 123.2 2.3 255 105-375 22-311 (382)
30 KOG1909 Ran GTPase-activating 99.2 7.4E-12 1.6E-16 119.5 1.8 251 83-351 31-311 (382)
31 KOG1259 Nischarin, modulator o 99.2 9.6E-12 2.1E-16 116.3 2.0 142 231-379 274-416 (490)
32 KOG3207 Beta-tubulin folding c 99.2 5.2E-12 1.1E-16 123.7 -0.1 208 166-375 118-339 (505)
33 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.4E-16 120.3 0.4 208 111-327 119-339 (505)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.4E-15 101.6 4.7 104 170-278 20-126 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 5.3E-10 1.2E-14 100.0 6.1 15 264-278 63-77 (175)
36 KOG1259 Nischarin, modulator o 99.0 8.1E-11 1.7E-15 110.2 0.1 134 213-353 280-414 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.1E-09 2.5E-14 120.8 4.8 82 143-226 570-651 (889)
38 KOG0531 Protein phosphatase 1, 98.9 1.9E-10 4E-15 118.5 -2.6 246 111-379 70-322 (414)
39 KOG0531 Protein phosphatase 1, 98.8 4.6E-10 9.9E-15 115.6 -3.0 217 143-375 71-290 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 5.3E-09 1.2E-13 76.9 2.7 61 314-374 1-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.7E-08 3.6E-13 111.7 6.6 204 110-327 520-730 (889)
42 PF13855 LRR_8: Leucine rich r 98.6 1.5E-08 3.2E-13 74.5 2.4 38 190-227 22-59 (61)
43 KOG2982 Uncharacterized conser 98.6 1.3E-08 2.9E-13 95.5 2.4 210 139-370 66-287 (418)
44 KOG1859 Leucine-rich repeat pr 98.6 2.3E-09 5E-14 111.1 -3.1 200 192-403 83-295 (1096)
45 KOG1859 Leucine-rich repeat pr 98.6 1E-09 2.3E-14 113.6 -5.7 199 168-377 83-294 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.5 7.9E-09 1.7E-13 97.0 -3.0 194 170-365 186-390 (419)
47 KOG2120 SCF ubiquitin ligase, 98.4 1.7E-08 3.7E-13 94.8 -3.3 220 146-372 138-373 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.3 2.8E-07 6E-12 85.8 3.4 244 107-376 24-317 (388)
49 COG5238 RNA1 Ran GTPase-activa 98.3 5.3E-07 1.2E-11 83.9 3.9 223 143-378 29-288 (388)
50 KOG4579 Leucine-rich repeat (L 98.2 1E-07 2.2E-12 79.9 -1.8 110 267-381 29-141 (177)
51 KOG4579 Leucine-rich repeat (L 98.2 8.9E-08 1.9E-12 80.3 -2.6 135 243-382 29-166 (177)
52 PF08263 LRRNT_2: Leucine rich 98.1 5E-06 1.1E-10 56.2 4.0 36 37-76 2-43 (43)
53 KOG2982 Uncharacterized conser 98.0 2.1E-06 4.6E-11 80.9 2.0 221 159-379 35-266 (418)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 54.3 3.5 36 339-375 2-37 (44)
55 KOG3665 ZYG-1-like serine/thre 97.9 8.3E-06 1.8E-10 88.4 3.8 138 144-283 122-268 (699)
56 PRK15386 type III secretion pr 97.9 3.3E-05 7.3E-10 77.7 7.8 137 107-275 46-187 (426)
57 PF12799 LRR_4: Leucine Rich r 97.9 1.9E-05 4E-10 53.6 4.1 37 314-351 1-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.8 1E-05 2.3E-10 87.6 2.6 142 112-260 121-269 (699)
59 PRK15386 type III secretion pr 97.6 0.00022 4.7E-09 71.9 8.1 76 165-253 48-124 (426)
60 KOG1644 U2-associated snRNP A' 97.4 0.00018 4E-09 64.6 4.6 58 170-229 43-100 (233)
61 KOG1644 U2-associated snRNP A' 97.4 0.00025 5.4E-09 63.8 5.2 39 263-301 62-100 (233)
62 KOG2739 Leucine-rich acidic nu 97.0 0.00034 7.5E-09 65.3 2.0 68 161-230 35-104 (260)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00064 1.4E-08 63.5 2.6 68 185-254 35-104 (260)
64 PF13306 LRR_5: Leucine rich r 96.8 0.0028 6.1E-08 53.5 6.1 58 165-224 8-65 (129)
65 KOG4341 F-box protein containi 96.8 0.00018 3.8E-09 71.2 -1.9 85 114-203 139-226 (483)
66 PF13306 LRR_5: Leucine rich r 96.7 0.0034 7.4E-08 53.0 6.0 101 143-249 11-111 (129)
67 KOG4341 F-box protein containi 96.5 0.00038 8.3E-09 68.9 -1.5 259 108-374 159-438 (483)
68 KOG1947 Leucine rich repeat pr 96.4 0.00084 1.8E-08 70.2 -0.0 61 192-252 242-306 (482)
69 KOG2123 Uncharacterized conser 96.2 0.00051 1.1E-08 64.7 -2.7 100 168-271 18-123 (388)
70 KOG1947 Leucine rich repeat pr 96.0 0.0013 2.8E-08 68.7 -0.8 130 167-296 186-328 (482)
71 KOG2123 Uncharacterized conser 95.9 0.0006 1.3E-08 64.2 -3.4 101 216-320 18-123 (388)
72 KOG4308 LRR-containing protein 95.5 0.00022 4.7E-09 74.2 -8.9 206 169-374 87-330 (478)
73 KOG4308 LRR-containing protein 95.5 0.00023 5E-09 74.1 -8.9 204 146-350 89-330 (478)
74 PF00560 LRR_1: Leucine Rich R 95.4 0.0062 1.4E-07 34.5 0.8 17 340-357 2-18 (22)
75 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.3E-07 33.5 0.9 18 171-189 2-19 (22)
76 PF13504 LRR_7: Leucine rich r 91.9 0.1 2.2E-06 27.4 1.3 11 340-350 3-13 (17)
77 KOG0473 Leucine-rich repeat pr 88.0 0.014 2.9E-07 53.9 -6.7 86 261-350 38-123 (326)
78 KOG0473 Leucine-rich repeat pr 87.2 0.018 3.9E-07 53.2 -6.4 82 168-252 41-122 (326)
79 KOG3864 Uncharacterized conser 87.1 0.15 3.3E-06 46.2 -0.6 67 107-178 119-185 (221)
80 smart00369 LRR_TYP Leucine-ric 86.5 0.59 1.3E-05 27.3 2.0 14 338-351 2-15 (26)
81 smart00370 LRR Leucine-rich re 86.5 0.59 1.3E-05 27.3 2.0 14 338-351 2-15 (26)
82 KOG3864 Uncharacterized conser 85.7 0.23 4.9E-06 45.1 -0.2 82 266-347 102-185 (221)
83 smart00370 LRR Leucine-rich re 84.6 0.87 1.9E-05 26.5 2.1 13 170-182 3-15 (26)
84 smart00369 LRR_TYP Leucine-ric 84.6 0.87 1.9E-05 26.5 2.1 13 170-182 3-15 (26)
85 PF13516 LRR_6: Leucine Rich r 84.3 0.14 3E-06 29.4 -1.5 13 339-351 3-15 (24)
86 KOG4242 Predicted myosin-I-bin 68.9 17 0.00038 37.4 7.3 59 171-229 216-280 (553)
87 smart00364 LRR_BAC Leucine-ric 66.7 3.6 7.7E-05 24.3 1.2 13 339-351 3-15 (26)
88 smart00365 LRR_SD22 Leucine-ri 65.5 5.1 0.00011 23.6 1.7 14 338-351 2-15 (26)
89 smart00368 LRR_RI Leucine rich 60.2 6.7 0.00015 23.4 1.6 14 338-351 2-15 (28)
90 KOG3763 mRNA export factor TAP 56.9 8.3 0.00018 40.4 2.6 11 316-326 272-282 (585)
91 TIGR00864 PCC polycystin catio 52.8 16 0.00034 45.7 4.4 38 344-381 1-38 (2740)
92 smart00367 LRR_CC Leucine-rich 50.6 11 0.00023 21.9 1.4 15 144-158 2-16 (26)
93 KOG3763 mRNA export factor TAP 47.8 12 0.00025 39.4 2.0 64 287-353 216-285 (585)
94 KOG4242 Predicted myosin-I-bin 34.8 56 0.0012 33.9 4.4 34 338-371 354-389 (553)
95 PF07172 GRP: Glycine rich pro 30.2 26 0.00057 27.9 1.0 12 5-16 1-12 (95)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.2e-42 Score=387.85 Aligned_cols=317 Identities=34% Similarity=0.570 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHhcCCC-----CCCCCCCCCCCCCCCCCCCCcEeCCCCCceEEEEEecCCCCCCCCccccccccchhccC
Q 011820 37 KAEQEALYTAIKGFVG-----NWWNGSNLYPDPCGWTPIEGVSCDIYDDLWYITALSFGSLHDNSLGCVTNVEFREQLFE 111 (477)
Q Consensus 37 ~~~~~aL~~~~~~~~~-----~~W~~~~~~~d~C~w~~~~Gv~C~~~~~~~~v~~L~l~~~~~~~l~~~~~g~i~~~l~~ 111 (477)
++|++||++||+++.+ .+|+.. .|||.|. ||+|+.. + +|+.|++.. +.+ .|.+++.+..
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~---~~~c~w~---gv~c~~~-~--~v~~L~L~~---~~i----~~~~~~~~~~ 91 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQ---GITCNNS-S--RVVSIDLSG---KNI----SGKISSAIFR 91 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCC---CCCCcCc---ceecCCC-C--cEEEEEecC---CCc----cccCChHHhC
Confidence 4799999999998753 358643 5899995 9999853 2 799999863 222 3556677777
Q ss_pred CCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCC
Q 011820 112 LKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGR 191 (477)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~ 191 (477)
+++|++|++++|.+.+ .+|...+.. +++|++|+|++| .+++.+|. +.+++|++|+|++|.+++.+|..+++
T Consensus 92 l~~L~~L~Ls~n~~~~-----~ip~~~~~~-l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 92 LPYIQTINLSNNQLSG-----PIPDDIFTT-SSSLRYLNLSNN-NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred CCCCCEEECCCCccCC-----cCChHHhcc-CCCCCEEECcCC-ccccccCc--cccCCCCEEECcCCcccccCChHHhc
Confidence 7777777777776654 566554322 356666666665 45555543 33555555555555555555555555
Q ss_pred CCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEee
Q 011820 192 LSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLD 271 (477)
Q Consensus 192 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 271 (477)
+++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..++++++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCC
Q 011820 272 LRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 272 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 351 (477)
+++|.+++.+|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.+|..+..+++|+.|++++|.++
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 555555555555555555555555555555544443 3444555555555555555555555555555555555555555
Q ss_pred CCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 352 GTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 352 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
+.+|..+..+++|+.|++++|+++|.+|
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 5555555555555555555555555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.9e-35 Score=330.38 Aligned_cols=270 Identities=34% Similarity=0.529 Sum_probs=251.2
Q ss_pred ccccchhcc-CCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCC
Q 011820 102 NVEFREQLF-ELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENG 180 (477)
Q Consensus 102 ~g~i~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~ 180 (477)
.|.+|..+. .+++|++|++++|.+.+ .+|.. .+++|++|++++| .+++.+|..++++++|++|++++|.
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~-----~~p~~----~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTG-----SIPRG----SIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCcccc-----ccCcc----ccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCc
Confidence 368888876 89999999999998875 67753 2589999999999 7999999999999999999999999
Q ss_pred CCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchh
Q 011820 181 LSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKE 260 (477)
Q Consensus 181 l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 260 (477)
+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|++++.+|..+.++++|++|++++|.+++.+|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCC
Q 011820 261 IGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRL 340 (477)
Q Consensus 261 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L 340 (477)
++++++|++|++++|++++.+|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.+|..+..+++|
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 99999999999999999999999999999999999999999988886 67889999999999999999999999999999
Q ss_pred CEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCCh
Q 011820 341 RFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSE 382 (477)
Q Consensus 341 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 382 (477)
+.|++++|++++.+|..++.+++|+.|++++|+++|.+|...
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 999999999999999999999999999999999999998654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.2e-28 Score=242.38 Aligned_cols=286 Identities=24% Similarity=0.265 Sum_probs=169.9
Q ss_pred hhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccc
Q 011820 107 EQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELP 186 (477)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip 186 (477)
+++.-++.|++||||.|.++ +||...|.. -.++++|+|++| .++..-...|..+.+|..|.|+.|.++..-+
T Consensus 143 e~L~~l~alrslDLSrN~is------~i~~~sfp~-~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLIS------EIPKPSFPA-KVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred HHHHhHhhhhhhhhhhchhh------cccCCCCCC-CCCceEEeeccc-cccccccccccccchheeeecccCcccccCH
Confidence 35566677777777777766 444443333 256777777777 4665444556666677777777777763333
Q ss_pred hhcCCCCCCcEEEeecccCCCCCcccccCCc------------------------cccEeeeecccCCCCccccccCCcC
Q 011820 187 TNLGRLSNLKKLVVSGNWLNGRIPDSFGYLS------------------------ELLILDLSRNSLSGPLPLSLGGLTS 242 (477)
Q Consensus 187 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~------------------------~L~~L~L~~N~l~~~~p~~l~~l~~ 242 (477)
..|.++++|+.|+|..|++.-.---.|.+++ ++++|+|..|+++..-..++.+++.
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 4555566777776666665422122344444 4444444444444444444555555
Q ss_pred CcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEcc
Q 011820 243 LLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLS 322 (477)
Q Consensus 243 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls 322 (477)
|+.|++++|.+....++.+.-.++|+.|+|++|+++...+..+..+..|++|+|++|.+. .+....|..+++|++|||+
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCc
Confidence 555555555555444555555555666666666555555555555555666666666554 4444566677788888888
Q ss_pred CCCCCCCchh---hhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCC
Q 011820 323 NTGLAGEVPE---FMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPN 399 (477)
Q Consensus 323 ~n~l~~~ip~---~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~ 399 (477)
+|.+++.|.+ .|.++++|+.|+|.+|++...--.+|..++.|++|||.+|.+- .|....+-...+. .+-......
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m~Lk-~Lv~nSssf 451 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEPMELK-ELVMNSSSF 451 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce-eecccccccchhh-hhhhcccce
Confidence 8887765543 4667888888888888888444456888888888888888886 3433222222222 222233346
Q ss_pred CCCC
Q 011820 400 LCYP 403 (477)
Q Consensus 400 lc~~ 403 (477)
+|++
T Consensus 452 lCDC 455 (873)
T KOG4194|consen 452 LCDC 455 (873)
T ss_pred EEec
Confidence 7776
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-27 Score=238.05 Aligned_cols=253 Identities=24% Similarity=0.248 Sum_probs=149.1
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
+.|+.||||.| .++..--.++..-.++++|+|++|.|+..--..|.++.+|.+|.|++|+++...+..|.++++|+.|+
T Consensus 149 ~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 149 PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 45555555555 34422223344444555555555555544444555555666666666666544445555566666666
Q ss_pred eecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCC
Q 011820 224 LSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGG 303 (477)
Q Consensus 224 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 303 (477)
|..|++.-.--..|..+++|+.|.|..|.+...-...|-.+.++++|+|+.|+++..-..++.+++.|+.|+||+|.+.
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~- 306 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ- 306 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-
Confidence 6666554222334444555555555555444333334445566666666666666554556667777777777777776
Q ss_pred cCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChh
Q 011820 304 DLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEW 383 (477)
Q Consensus 304 ~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 383 (477)
.|....|...++|++|+|++|+++..-+..|..+..|+.|+|++|+++..--..|..+++|++|||++|.+++.|.....
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 34444666677777777777777766667777777777777777777744444566677777788888877777765443
Q ss_pred hhcccc--CcccccCCC
Q 011820 384 FYGKMG--RRFGAWNNP 398 (477)
Q Consensus 384 ~~~~~~--~~~~~~~N~ 398 (477)
.+..+. +++++.||.
T Consensus 387 ~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred hhccchhhhheeecCce
Confidence 333222 444555554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.5e-27 Score=237.37 Aligned_cols=263 Identities=31% Similarity=0.352 Sum_probs=176.7
Q ss_pred cccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCC
Q 011820 103 VEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 103 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
..+|.+++.+.+|++|.+++|++.. ..|++. -++.|+.+++..|..-+.-||..|.++..|..||||+|++.
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs------~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLIS--VHGELS------DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR 116 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhHh--hhhhhc------cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh
Confidence 5789999999999999999887752 112222 15788888888884334458888888888888888888888
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCCc-ccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCC------
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRIP-DSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEG------ 255 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~------ 255 (477)
+.|..+..-+++-+|+|++|+|. .|| ..|.+++.|-.|||++|++. .+|+.+.++..|++|+|++|.+..
T Consensus 117 -EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 117 -EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred -hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 78888888888888888888887 455 45677888888888888887 677788888888888888886542
Q ss_pred -------------------CCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCc
Q 011820 256 -------------------KIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNL 316 (477)
Q Consensus 256 -------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L 316 (477)
.+|..+..+.+|+.+|++.|.+. .+|+.+.++++|+.|+||+|.++ ++.. ......+|
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~-~~~~W~~l 270 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNM-TEGEWENL 270 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeec-cHHHHhhh
Confidence 34444555555555566655555 45555556666666666666554 2221 23334555
Q ss_pred cEEEccCCCCCCCchhhhcCCCCCCEEecccccCCC-CChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 317 VILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTG-TISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 317 ~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
++|++|.|+++ .+|+.+.++++|+.|.+.+|+++- -||..++++..|+++..++|++. -+|.+
T Consensus 271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence 66666666665 556666666666666666665552 35555666666666666666554 44433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=1e-26 Score=233.03 Aligned_cols=283 Identities=29% Similarity=0.349 Sum_probs=201.3
Q ss_pred cccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhh-hcCCCCCcEEEcccCCC
Q 011820 103 VEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTS-LGHLMKLRSLVLLENGL 181 (477)
Q Consensus 103 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~-l~~l~~L~~L~Ls~n~l 181 (477)
..||+.++++..|+.||||+|++. ++|... .. .+++-+|+||+| ++. .||.. +-+++.|-+||||+|.+
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~------EvP~~L-E~-AKn~iVLNLS~N-~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLR------EVPTNL-EY-AKNSIVLNLSYN-NIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred CCCCchhcccccceeeecchhhhh------hcchhh-hh-hcCcEEEEcccC-ccc-cCCchHHHhhHhHhhhccccchh
Confidence 458888999999999999998887 567652 22 478888888888 576 56655 46788888888888888
Q ss_pred CCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCC-CCccccccCCcCCcEEecccCcCCCCCchh
Q 011820 182 SGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLS-GPLPLSLGGLTSLLKFDLSNNQLEGKIPKE 260 (477)
Q Consensus 182 ~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 260 (477)
. .+|+.+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 7 78888888888888888888775433333445566667777665432 357777777777888888887776 67777
Q ss_pred hcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCC-CCchhhhcCCCC
Q 011820 261 IGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLA-GEVPEFMAELKR 339 (477)
Q Consensus 261 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~-~~ip~~l~~l~~ 339 (477)
+-++++|+.|+|++|+++ .+......+.+|++|+||.|.++ .+|. .+..+++|+.|.+.+|+++ .-||..++++.+
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchH-HHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 777777888888887776 33444556667777777777776 6665 5566777777777777765 246777777777
Q ss_pred CCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCC
Q 011820 340 LRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYP 403 (477)
Q Consensus 340 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~ 403 (477)
|+.+..++|++. .+|+.++.+..|+.|.|+.|++. ++|..+-+...+ ..+++..||.+.-|
T Consensus 318 Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l-~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 318 LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL-KVLDLRENPNLVMP 378 (1255)
T ss_pred hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCc-ceeeccCCcCccCC
Confidence 777777777776 67777777777777777777775 566655444443 35566677766654
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=3.5e-25 Score=212.31 Aligned_cols=253 Identities=33% Similarity=0.464 Sum_probs=227.5
Q ss_pred cccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCC
Q 011820 103 VEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 103 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
..+.+.+.++..|.+|++.+|.+. ++|.++.. +..++.|+.++| .++ .+|+.++.+.+|+.++.++|.+.
T Consensus 58 ~~l~~dl~nL~~l~vl~~~~n~l~------~lp~aig~--l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 58 EVLREDLKNLACLTVLNVHDNKLS------QLPAAIGE--LEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hhccHhhhcccceeEEEeccchhh------hCCHHHHH--HHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhcccccee
Confidence 356678889999999999999887 67776433 478899999999 677 78999999999999999999998
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhc
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIG 262 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 262 (477)
++|++++.+..|+.++..+|+++ ..|..+.++.+|..+++.+|++... |+..-+++.|++||...|.++ .+|..++
T Consensus 128 -el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~-tlP~~lg 203 (565)
T KOG0472|consen 128 -ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE-TLPPELG 203 (565)
T ss_pred -ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh-cCChhhc
Confidence 88999999999999999999998 6788889999999999999999854 444445999999999999987 8999999
Q ss_pred CCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCE
Q 011820 263 YLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRF 342 (477)
Q Consensus 263 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~ 342 (477)
.+.+|..|++..|++. .+| .|..+..|+++.++.|.+. .+|.....+++++.+|||.+|+++ +.|+.+..+.+|++
T Consensus 204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~r 279 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLER 279 (565)
T ss_pred chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhh
Confidence 9999999999999998 666 7899999999999999997 888877789999999999999998 89999999999999
Q ss_pred EecccccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 343 LGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 343 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
||+|+|.++ ..|.+++++ +|+.|-+.+|++.
T Consensus 280 LDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 280 LDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 999999999 688899999 9999999999985
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=9.2e-25 Score=209.43 Aligned_cols=264 Identities=29% Similarity=0.368 Sum_probs=224.4
Q ss_pred CCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCC
Q 011820 113 KHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRL 192 (477)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l 192 (477)
..|+.|++++|.+. .+-.. ... +..|++|++.+| .++ ..|++++.+..++.++.++|+++ .+|+.++.+
T Consensus 45 v~l~~lils~N~l~------~l~~d-l~n-L~~l~vl~~~~n-~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~ 113 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE------VLRED-LKN-LACLTVLNVHDN-KLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSL 113 (565)
T ss_pred cchhhhhhccCchh------hccHh-hhc-ccceeEEEeccc-hhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhh
Confidence 35677888888775 23222 233 588999999999 677 68899999999999999999998 899999999
Q ss_pred CCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeec
Q 011820 193 SNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDL 272 (477)
Q Consensus 193 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 272 (477)
.+|+.+++++|.+. .+|+.++.+..|..++..+|+++ ..|+.+.++.+|..+++.+|++....|. .-+++.|+.||.
T Consensus 114 ~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 114 ISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhccc
Confidence 99999999999998 77888999999999999999998 7899999999999999999999854444 445999999999
Q ss_pred cCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhc-CCCCCCEEecccccCC
Q 011820 273 RNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMA-ELKRLRFLGLSNNKLT 351 (477)
Q Consensus 273 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~-~l~~L~~L~Ls~N~l~ 351 (477)
..|.++ .+|+.++.+.+|..|+|..|++. .+| .|.++..|+++.++.|.+. .+|.... .++++..|||+.|++.
T Consensus 191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 999876 88999999999999999999998 777 6889999999999999998 7787765 8999999999999999
Q ss_pred CCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCC
Q 011820 352 GTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPN 399 (477)
Q Consensus 352 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~ 399 (477)
+.|..++.+.+|.+||+|+|.+++ +|.+.... . ...+.+.|||.
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-h-L~~L~leGNPl 309 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-H-LKFLALEGNPL 309 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCcccc-CCcccccc-e-eeehhhcCCch
Confidence 899999999999999999999995 45443221 1 12334556654
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=1.7e-20 Score=201.39 Aligned_cols=234 Identities=27% Similarity=0.326 Sum_probs=148.1
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSG 183 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~ 183 (477)
++|+.+. ++|+.|++.+|.++ .+|.. +++|++|++++| .++ .+|.. .++|++|++++|.++
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt------~LP~l-----p~~Lk~LdLs~N-~Lt-sLP~l---p~sL~~L~Ls~N~L~- 275 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLT------SLPAL-----PPELRTLEVSGN-QLT-SLPVL---PPGLLELSIFSNPLT- 275 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCC------CCCCC-----CCCCcEEEecCC-ccC-cccCc---ccccceeeccCCchh-
Confidence 4565554 36777777777665 34431 467777777777 566 34432 235555555555554
Q ss_pred ccchhcC-----------------CCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEE
Q 011820 184 ELPTNLG-----------------RLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKF 246 (477)
Q Consensus 184 ~ip~~l~-----------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 246 (477)
.+|.... ..++|++|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|++|
T Consensus 276 ~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~L 347 (788)
T PRK15387 276 HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQEL 347 (788)
T ss_pred hhhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceE
Confidence 3332110 12345555555555442 2221 1234444555555442 3321 1367777
Q ss_pred ecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCC
Q 011820 247 DLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGL 326 (477)
Q Consensus 247 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l 326 (477)
++++|+++ .+|.. ..+|+.|++++|.++. +|.. ..+|+.|++++|.++ .+|.. .++|+.|++++|.+
T Consensus 348 dLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~L 414 (788)
T PRK15387 348 SVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRL 414 (788)
T ss_pred ecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc----ccCCCEEEccCCcC
Confidence 77777777 35542 3466777777777773 5542 356888999999887 46642 36799999999999
Q ss_pred CCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCCh
Q 011820 327 AGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSE 382 (477)
Q Consensus 327 ~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 382 (477)
+ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|+|+|.+|...
T Consensus 415 s-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 415 T-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred C-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 8 46754 357889999999998 799999999999999999999999887543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=4.7e-19 Score=202.84 Aligned_cols=224 Identities=25% Similarity=0.284 Sum_probs=121.2
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
++|+.|+|+++..+ ..+|. ++.+++|++|+|++|.....+|..++++++|+.|++++|...+.+|..+ ++++|+.|+
T Consensus 634 ~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 44444444443212 23332 4444444444444444333444444444444444444443333344332 344444554
Q ss_pred eecccCCCCccccccCCcCCcEEecccCcCCCCCchhh------------------------------cCCCCCCEeecc
Q 011820 224 LSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEI------------------------------GYLKNITLLDLR 273 (477)
Q Consensus 224 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l------------------------------~~l~~L~~L~Ls 273 (477)
+++|...+.+|.. .++|++|++++|.+. .+|..+ ...++|+.|+++
T Consensus 711 Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 711 LSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 4444333233321 234455555555543 333221 112456677777
Q ss_pred CCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCC
Q 011820 274 NNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGT 353 (477)
Q Consensus 274 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ 353 (477)
+|...+.+|..++++++|+.|++++|...+.+|.. . .+++|+.|++++|.....+|.. .++|+.|+|++|.++ .
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-E 860 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-c
Confidence 77666677777778888888888777554466642 2 5677777777776554455442 356777777777777 6
Q ss_pred ChhhcCCCCCCCEEEeeCC-cCeeecCCC
Q 011820 354 ISPKLATMPCVSALYLNGN-NLSGELQFS 381 (477)
Q Consensus 354 ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~ 381 (477)
+|.++..+++|+.|++++| ++. .+|..
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~-~l~~~ 888 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQ-RVSLN 888 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcC-ccCcc
Confidence 7777888888888888874 444 35543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=7.3e-19 Score=201.29 Aligned_cols=249 Identities=22% Similarity=0.287 Sum_probs=198.3
Q ss_pred cchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCc
Q 011820 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGE 184 (477)
Q Consensus 105 i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ 184 (477)
++..+..+++|+.|+|+++.... .+|. +. .+++|++|++++|. .-..+|..+.++++|++|++++|.....
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~-----~ip~--ls-~l~~Le~L~L~~c~-~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLK-----EIPD--LS-MATNLETLKLSDCS-SLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcC-----cCCc--cc-cCCcccEEEecCCC-CccccchhhhccCCCCEEeCCCCCCcCc
Confidence 44555667777777777654322 5664 22 36899999999995 4458999999999999999999866668
Q ss_pred cchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccc---------------------------
Q 011820 185 LPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSL--------------------------- 237 (477)
Q Consensus 185 ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l--------------------------- 237 (477)
+|..+ ++++|++|++++|...+.+|.. ..+|+.|++++|.+. .+|..+
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccch
Confidence 88766 7999999999999766666653 457888888888875 344332
Q ss_pred ---cCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCC
Q 011820 238 ---GGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQ 314 (477)
Q Consensus 238 ---~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~ 314 (477)
...++|+.|++++|...+.+|..++++++|+.|++++|..-+.+|..+ ++++|+.|++++|.....+|. ...
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----~~~ 846 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----IST 846 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc----ccc
Confidence 113578889999988878899999999999999999986656778765 789999999999876556664 246
Q ss_pred CccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCc
Q 011820 315 NLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNN 373 (477)
Q Consensus 315 ~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 373 (477)
+|+.|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 8999999999998 789999999999999999965444788888999999999999884
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.1e-19 Score=196.35 Aligned_cols=223 Identities=24% Similarity=0.379 Sum_probs=114.1
Q ss_pred CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCC
Q 011820 114 HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLS 193 (477)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~ 193 (477)
+...|+++++.++ .+|... .++|+.|++++| .++ .+|..+. ++|++|++++|+++ .+|..+. .
T Consensus 179 ~~~~L~L~~~~Lt------sLP~~I----p~~L~~L~Ls~N-~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~ 241 (754)
T PRK15370 179 NKTELRLKILGLT------TIPACI----PEQITTLILDNN-ELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--D 241 (754)
T ss_pred CceEEEeCCCCcC------cCCccc----ccCCcEEEecCC-CCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--c
Confidence 4556666665554 344321 245666666666 455 4454443 35666666666665 4554442 3
Q ss_pred CCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeecc
Q 011820 194 NLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLR 273 (477)
Q Consensus 194 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 273 (477)
+|+.|+|++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 5666666666665 4454442 35666666666665 3454432 35666666666665 2343222 245555555
Q ss_pred CCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCC
Q 011820 274 NNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGT 353 (477)
Q Consensus 274 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ 353 (477)
+|.++. +|..+ .++|+.|++++|.++ .+|. .+ .++|+.|++++|+++ .+|..+. ++|+.|+|++|+++ .
T Consensus 313 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~-~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 313 SNSLTA-LPETL--PPGLKTLEAGENALT-SLPA-SL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-N 381 (754)
T ss_pred CCcccc-CCccc--cccceeccccCCccc-cCCh-hh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-C
Confidence 555552 33222 135555555555554 2442 11 245555555555554 3444332 45555555555555 3
Q ss_pred ChhhcCCCCCCCEEEeeCCcCe
Q 011820 354 ISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 354 ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+|..+. ..|+.|++++|+|+
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc
Confidence 444332 23555555555554
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=2e-20 Score=185.47 Aligned_cols=193 Identities=25% Similarity=0.274 Sum_probs=80.7
Q ss_pred chhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCC------CCchhhhcCCCCCcEEEcccC
Q 011820 106 REQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLT------GPIPTSLGHLMKLRSLVLLEN 179 (477)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~------g~ip~~l~~l~~L~~L~Ls~n 179 (477)
...+..+++|+.|+++++.++... ...++.. ....++|++|+++++ .+. ..++..+.++++|++|++++|
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~-~~~i~~~--l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEA-AKALASA--LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHH-HHHHHHH--HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 334444555666666655543200 0011111 111244555555555 233 112334444555555555555
Q ss_pred CCCCccchhcCCCCC---CcEEEeecccCCC----CCcccccCC-ccccEeeeecccCCCC----ccccccCCcCCcEEe
Q 011820 180 GLSGELPTNLGRLSN---LKKLVVSGNWLNG----RIPDSFGYL-SELLILDLSRNSLSGP----LPLSLGGLTSLLKFD 247 (477)
Q Consensus 180 ~l~~~ip~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ 247 (477)
.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|+
T Consensus 92 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 92 ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 554433333333333 5555555555442 111223333 4555555555554421 122233344455555
Q ss_pred cccCcCCCC----CchhhcCCCCCCEeeccCCcCCcc----chHHhhcCCCCCEEEcccCCCC
Q 011820 248 LSNNQLEGK----IPKEIGYLKNITLLDLRNNKFSGE----LTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 248 L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+++|.+++. ++..+..+++|++|++++|.+++. +...+..+++|++|++++|.++
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 555444421 122233334444444444444321 2222333444444444444443
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=2e-20 Score=185.46 Aligned_cols=254 Identities=26% Similarity=0.278 Sum_probs=189.7
Q ss_pred EEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCC----chhhhcCCCCCcEEEcccCCCCC------ccc
Q 011820 117 SLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGP----IPTSLGHLMKLRSLVLLENGLSG------ELP 186 (477)
Q Consensus 117 ~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~----ip~~l~~l~~L~~L~Ls~n~l~~------~ip 186 (477)
.|+|.++.+++. ... ..+.. +..|++|+++++ .++.. ++..+...++|++|+++++.+.+ .++
T Consensus 2 ~l~L~~~~l~~~----~~~-~~~~~-l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~ 74 (319)
T cd00116 2 QLSLKGELLKTE----RAT-ELLPK-LLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL 74 (319)
T ss_pred ccccccCccccc----chH-HHHHH-HhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH
Confidence 456666666531 121 11222 467999999998 57543 66677788899999999998872 345
Q ss_pred hhcCCCCCCcEEEeecccCCCCCcccccCCcc---ccEeeeecccCCC----CccccccCC-cCCcEEecccCcCCCC--
Q 011820 187 TNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSE---LLILDLSRNSLSG----PLPLSLGGL-TSLLKFDLSNNQLEGK-- 256 (477)
Q Consensus 187 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~N~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~-- 256 (477)
..+.++++|++|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 66778999999999999998766666665555 9999999999874 234456677 8999999999999843
Q ss_pred --CchhhcCCCCCCEeeccCCcCCcc----chHHhhcCCCCCEEEcccCCCCCcCCh---hhhcCCCCccEEEccCCCCC
Q 011820 257 --IPKEIGYLKNITLLDLRNNKFSGE----LTKSLQEMYSLEEMVFSNNPIGGDLKS---LEWKNLQNLVILDLSNTGLA 327 (477)
Q Consensus 257 --~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~i~~---~~~~~l~~L~~L~Ls~n~l~ 327 (477)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.-.. ..+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 345566788999999999999842 445566778999999999988743211 13556789999999999998
Q ss_pred CCchhhhc-----CCCCCCEEecccccCCC----CChhhcCCCCCCCEEEeeCCcCeee
Q 011820 328 GEVPEFMA-----ELKRLRFLGLSNNKLTG----TISPKLATMPCVSALYLNGNNLSGE 377 (477)
Q Consensus 328 ~~ip~~l~-----~l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ 377 (477)
+.....+. ..+.|++|++++|.++. .+...+..+++|+++++++|+++..
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 64333332 24799999999999973 3455677778999999999999854
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.8e-19 Score=193.05 Aligned_cols=227 Identities=25% Similarity=0.369 Sum_probs=183.5
Q ss_pred CCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCC
Q 011820 113 KHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRL 192 (477)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l 192 (477)
++|+.|++++|.+. .+|... .++|++|++++| .++ .+|..+. ++|+.|+|++|.+. .+|..+.
T Consensus 199 ~~L~~L~Ls~N~Lt------sLP~~l----~~nL~~L~Ls~N-~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-- 261 (754)
T PRK15370 199 EQITTLILDNNELK------SLPENL----QGNIKTLYANSN-QLT-SIPATLP--DTIQEMELSINRIT-ELPERLP-- 261 (754)
T ss_pred cCCcEEEecCCCCC------cCChhh----ccCCCEEECCCC-ccc-cCChhhh--ccccEEECcCCccC-cCChhHh--
Confidence 47999999999887 577543 368999999999 688 6777654 47999999999998 7887764
Q ss_pred CCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeec
Q 011820 193 SNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDL 272 (477)
Q Consensus 193 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 272 (477)
++|++|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++ .+|..+ .++|+.|++
T Consensus 262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~L 332 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEA 332 (754)
T ss_pred CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc--cccceeccc
Confidence 58999999999998 5777654 589999999999984 565543 47999999999998 466544 368999999
Q ss_pred cCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCC
Q 011820 273 RNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTG 352 (477)
Q Consensus 273 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 352 (477)
++|.+++ +|..+. ++|+.|++++|+++ .+|. .+ .++|++|+|++|+++ .+|..+. +.|+.|++++|+++
T Consensus 333 s~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~-~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~- 401 (754)
T PRK15370 333 GENALTS-LPASLP--PELQVLDVSKNQIT-VLPE-TL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV- 401 (754)
T ss_pred cCCcccc-CChhhc--CcccEEECCCCCCC-cCCh-hh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-
Confidence 9999985 666553 78999999999997 5775 33 368999999999999 5676664 47999999999998
Q ss_pred CChhh----cCCCCCCCEEEeeCCcCee
Q 011820 353 TISPK----LATMPCVSALYLNGNNLSG 376 (477)
Q Consensus 353 ~ip~~----l~~l~~L~~L~Ls~N~l~g 376 (477)
.+|.. ...++.+..|++.+|+++.
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 55554 4456889999999999973
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=3.5e-21 Score=201.61 Aligned_cols=220 Identities=30% Similarity=0.400 Sum_probs=118.6
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
.+|+++|++.| .++ .+|++++.+.+|+.+...+|.++ .+|..+...++|+.|++.+|.+. .+|.....++.|++|+
T Consensus 241 ~nl~~~dis~n-~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchh-hhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 45666666666 455 45566666667777776666664 56666666666666666666665 4555556666666666
Q ss_pred eecccCCCCccccc-c-------------------------CCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcC
Q 011820 224 LSRNSLSGPLPLSL-G-------------------------GLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKF 277 (477)
Q Consensus 224 L~~N~l~~~~p~~l-~-------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 277 (477)
|..|++.. .|+.+ . .++.|+.|++.+|.++...-..+.+.++|+.|+|++|++
T Consensus 317 L~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 66666652 22211 1 122344455555555544444455555555555555555
Q ss_pred CccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCC-CChh
Q 011820 278 SGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTG-TISP 356 (477)
Q Consensus 278 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~ 356 (477)
.......+.+++.|++|+||+|+++ .+|. .+..++.|++|...+|++. ..| .+..++.|+.+|++.|+|+. .+|.
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLT-TLPD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhh-hhhH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence 4333344455555555555555554 4442 4444555555555555554 344 44555555555555555543 2222
Q ss_pred hcCCCCCCCEEEeeCCc
Q 011820 357 KLATMPCVSALYLNGNN 373 (477)
Q Consensus 357 ~l~~l~~L~~L~Ls~N~ 373 (477)
.... ++|++|||++|.
T Consensus 472 ~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 472 ALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hCCC-cccceeeccCCc
Confidence 2211 455555555554
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=7.3e-21 Score=182.54 Aligned_cols=256 Identities=21% Similarity=0.273 Sum_probs=158.4
Q ss_pred CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEccc-CCCCCccchhcCCC
Q 011820 114 HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLE-NGLSGELPTNLGRL 192 (477)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~-n~l~~~ip~~l~~l 192 (477)
.-+.++|..|+++ .||...|.. +++|+.|||++| +++..-|++|..+++|.+|.+.+ |+|+..-...|+++
T Consensus 68 ~tveirLdqN~I~------~iP~~aF~~-l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS------SIPPGAFKT-LHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cceEEEeccCCcc------cCChhhccc-hhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 3456778888877 688877766 488888888888 68877788888888887777666 77773333467788
Q ss_pred CCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCC------------CCCchh
Q 011820 193 SNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLE------------GKIPKE 260 (477)
Q Consensus 193 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~------------~~~p~~ 260 (477)
..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+...--.++..+..++.+.+..|.+- ...|..
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 88888888888888777778888888888888888877333337777888888887777632 111222
Q ss_pred hcCCCCCCEeeccCCcCC-------------------------ccch-HHhhcCCCCCEEEcccCCCCCcCChhhhcCCC
Q 011820 261 IGYLKNITLLDLRNNKFS-------------------------GELT-KSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQ 314 (477)
Q Consensus 261 l~~l~~L~~L~Ls~N~l~-------------------------~~~p-~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~ 314 (477)
++...-..-..+.++++. +..| ..|..+++|+.|+|++|+++ .|....|.+..
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a 298 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAA 298 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchh
Confidence 222222222222222221 1222 23455555555556555555 33334555555
Q ss_pred CccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeec
Q 011820 315 NLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGEL 378 (477)
Q Consensus 315 ~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 378 (477)
.+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|..|+|-.|++.+.+
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 5555555555555333444555555555666666655555555555555555555555555544
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=9.4e-21 Score=198.43 Aligned_cols=242 Identities=26% Similarity=0.360 Sum_probs=196.2
Q ss_pred CCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCC
Q 011820 113 KHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRL 192 (477)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l 192 (477)
.+|++++++.|.++ .+| + |..-+.+|+.++...| .++ .+|..+...++|+.|++.+|.+. .+|+....+
T Consensus 241 ~nl~~~dis~n~l~------~lp-~-wi~~~~nle~l~~n~N-~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~ 309 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS------NLP-E-WIGACANLEALNANHN-RLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGL 309 (1081)
T ss_pred ccceeeecchhhhh------cch-H-HHHhcccceEecccch-hHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccc
Confidence 47888888888877 577 2 5555789999999888 675 78888888889999999999888 788888888
Q ss_pred CCCcEEEeecccCCCCCcccc--------------------------cCCccccEeeeecccCCCCccccccCCcCCcEE
Q 011820 193 SNLKKLVVSGNWLNGRIPDSF--------------------------GYLSELLILDLSRNSLSGPLPLSLGGLTSLLKF 246 (477)
Q Consensus 193 ~~L~~L~L~~n~l~~~~p~~l--------------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 246 (477)
+.|++|+|..|++.. .|+.+ ..++.|+.|.+.+|.++...-+.+.+++.|+.|
T Consensus 310 ~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL 388 (1081)
T ss_pred ceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence 899999998888863 33211 123568889999999998888889999999999
Q ss_pred ecccCcCCCCCc-hhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCC
Q 011820 247 DLSNNQLEGKIP-KEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTG 325 (477)
Q Consensus 247 ~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~ 325 (477)
+|++|++. .+| ..+.++..|+.|+|++|+++ .+|..+.++..|++|...+|.+. .+| .+..++.|+.+|++.|+
T Consensus 389 hLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP--e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 389 HLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP--ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech--hhhhcCcceEEecccch
Confidence 99999998 555 56789999999999999998 78899999999999999999997 777 57889999999999999
Q ss_pred CCCC-chhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCC
Q 011820 326 LAGE-VPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGN 372 (477)
Q Consensus 326 l~~~-ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 372 (477)
++.. +|... ..++|++|||++|.-.-.--..+..+.++...++.-|
T Consensus 464 L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 464 LSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 9753 34433 3389999999999843333445666777777777766
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=3.3e-18 Score=183.95 Aligned_cols=241 Identities=24% Similarity=0.251 Sum_probs=151.5
Q ss_pred CCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCC
Q 011820 113 KHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRL 192 (477)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l 192 (477)
..-..|+++++.++ .+|... .++|+.|++++| .++ .+|. ..++|++|++++|+++ .+|.. .
T Consensus 201 ~~~~~LdLs~~~Lt------sLP~~l----~~~L~~L~L~~N-~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p 261 (788)
T PRK15387 201 NGNAVLNVGESGLT------TLPDCL----PAHITTLVIPDN-NLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---P 261 (788)
T ss_pred CCCcEEEcCCCCCC------cCCcch----hcCCCEEEccCC-cCC-CCCC---CCCCCcEEEecCCccC-cccCc---c
Confidence 45678999999887 577643 358999999999 688 4665 3589999999999999 56653 3
Q ss_pred CCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhc----------
Q 011820 193 SNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIG---------- 262 (477)
Q Consensus 193 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~---------- 262 (477)
++|+.|++++|.++ .+|..+ ++|+.|++++|+++ .+|.. .++|+.|++++|.+++ +|....
T Consensus 262 ~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N 332 (788)
T PRK15387 262 PGLLELSIFSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNN 332 (788)
T ss_pred cccceeeccCCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCcccccccccccC
Confidence 57778888888776 344322 34556666666665 23432 2456666666666553 232110
Q ss_pred -------CCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhc
Q 011820 263 -------YLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMA 335 (477)
Q Consensus 263 -------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~ 335 (477)
-..+|++|++++|++++ +|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..
T Consensus 333 ~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt-~LP~l-- 400 (788)
T PRK15387 333 QLTSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT-SLPVL-- 400 (788)
T ss_pred ccccccccccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCccc-CCCCc--
Confidence 01245666666666653 3321 234555666666665 34431 246777888888777 35543
Q ss_pred CCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCC
Q 011820 336 ELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNL 400 (477)
Q Consensus 336 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~l 400 (477)
.++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|........ ...+++++|+.-
T Consensus 401 -~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~-L~~LdLs~N~Ls 458 (788)
T PRK15387 401 -PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSS-ETTVNLEGNPLS 458 (788)
T ss_pred -ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccC-CCeEECCCCCCC
Confidence 356788888888887 466532 45777888888887 67755332222 246777888754
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=4.5e-19 Score=170.35 Aligned_cols=240 Identities=23% Similarity=0.266 Sum_probs=189.0
Q ss_pred ccch-hccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCC
Q 011820 104 EFRE-QLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 104 ~i~~-~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
.||+ .+..+++||.|||++|.++ .|....|.++ ++|..|-+.+|+.++...-..|++|..|+.|.+.-|++.
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is------~I~p~AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNIS------FIAPDAFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred cCChhhccchhhhceecccccchh------hcChHhhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 4555 6788999999999999998 6777778775 677666665533788555567899999999999999999
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCC------------CccccccCCcCCcEEec--
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSG------------PLPLSLGGLTSLLKFDL-- 248 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~------------~~p~~l~~l~~L~~L~L-- 248 (477)
-...+.|..+++|..|.+.+|.+...--.+|..+..++.+++..|.+-. ..|..++......-..+
T Consensus 154 Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~ 233 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY 233 (498)
T ss_pred chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH
Confidence 7777889999999999999999884333488899999999998887321 12222222211111111
Q ss_pred -----------------------ccCcCCCCCc-hhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCc
Q 011820 249 -----------------------SNNQLEGKIP-KEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGD 304 (477)
Q Consensus 249 -----------------------~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 304 (477)
+.+...+..| ..|..+++|+.|+|++|++++.-+.+|.....+++|.|..|++. .
T Consensus 234 ~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~ 312 (498)
T KOG4237|consen 234 KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-F 312 (498)
T ss_pred HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-H
Confidence 1122233444 45788999999999999999998999999999999999999997 6
Q ss_pred CChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCC
Q 011820 305 LKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 305 i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 351 (477)
+....|.++..|++|+|.+|+|+-.-|..|..+..|.+|+|-.|.+.
T Consensus 313 v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 313 VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 66678899999999999999999888999999999999999998775
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.9e-19 Score=152.85 Aligned_cols=181 Identities=30% Similarity=0.505 Sum_probs=97.8
Q ss_pred CCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEE
Q 011820 167 HLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKF 246 (477)
Q Consensus 167 ~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 246 (477)
++.+.+.|.|++|+++ .+|+.+..+.+|+.|++++|+++ .+|..++.+++|++|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4455566666666666 55566666666666666666665 45556666666666666666655 455555555555555
Q ss_pred ecccCcCCC-CCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCC
Q 011820 247 DLSNNQLEG-KIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTG 325 (477)
Q Consensus 247 ~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~ 325 (477)
|+.+|++.. .+|..|..++.|+.|+|+.|.|. .+|..+ +.+.+|+.|.+..|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dv-------------------------g~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDV-------------------------GKLTNLQILSLRDND 161 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhh-------------------------hhhcceeEEeeccCc
Confidence 555555532 23444444444444444444443 333333 444444444444444
Q ss_pred CCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCC---CCEEEeeCCcCeeec
Q 011820 326 LAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPC---VSALYLNGNNLSGEL 378 (477)
Q Consensus 326 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~---L~~L~Ls~N~l~g~i 378 (477)
+- ++|..++.++.|+.|.+.+|+++ .+|+.++++.- =+.+.+.+|++.-.|
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 43 45555555666666666666666 55555554422 223455566665444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=4.2e-19 Score=152.65 Aligned_cols=178 Identities=24% Similarity=0.366 Sum_probs=113.5
Q ss_pred ccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEc
Q 011820 217 SELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVF 296 (477)
Q Consensus 217 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 296 (477)
.+++.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++.|++. ..|..|+.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 33444444444444 33444444444444444444444 44444555555555555555444 44555555555555555
Q ss_pred ccCCCCC-cCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 297 SNNPIGG-DLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 297 s~N~l~g-~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
++|++.. .+|. .|-.+..|+.|.|++|.+. .+|..++++++|+.|.++.|.+- .+|..++.+..|++|.+.+|+++
T Consensus 110 tynnl~e~~lpg-nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPG-NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCc-chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 5555542 2332 3444667888888888887 78999999999999999999998 89999999999999999999998
Q ss_pred eecCCChhhhccc--cCcccccCCCCCC
Q 011820 376 GELQFSEWFYGKM--GRRFGAWNNPNLC 401 (477)
Q Consensus 376 g~ip~~~~~~~~~--~~~~~~~~N~~lc 401 (477)
.+|......... .+.+....|||.-
T Consensus 187 -vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 187 -VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred -ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 666554332222 2445567888863
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=2.8e-14 Score=153.38 Aligned_cols=81 Identities=43% Similarity=0.700 Sum_probs=38.9
Q ss_pred CCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCcccc
Q 011820 157 LTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLS 236 (477)
Q Consensus 157 l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 236 (477)
++|.+|..++++++|++|+|++|.++|.+|..++++++|+.|+|++|+++|.+|+.++++++|++|+|++|+++|.+|..
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred c
Q 011820 237 L 237 (477)
Q Consensus 237 l 237 (477)
+
T Consensus 510 l 510 (623)
T PLN03150 510 L 510 (623)
T ss_pred H
Confidence 4
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=2.6e-14 Score=143.46 Aligned_cols=181 Identities=31% Similarity=0.443 Sum_probs=132.9
Q ss_pred CCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEe
Q 011820 168 LMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFD 247 (477)
Q Consensus 168 l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 247 (477)
+..-...||+.|++. ++|..+..+..|+.+.|+.|.+. .+|..+.++..|++|+|+.|+++ .+|..+..++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788888887 78888888888888888888876 77788888888888888888887 5677776665 78888
Q ss_pred cccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCC
Q 011820 248 LSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLA 327 (477)
Q Consensus 248 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~ 327 (477)
+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|.+. .+|. .+.. -.|..||++.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~-El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHhC-CceeeeecccCcee
Confidence 8888876 67777777778888888888776 56677777777777777777776 5554 3333 34677777777776
Q ss_pred CCchhhhcCCCCCCEEecccccCCCCChhhcC
Q 011820 328 GEVPEFMAELKRLRFLGLSNNKLTGTISPKLA 359 (477)
Q Consensus 328 ~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 359 (477)
.+|-.|..+++|++|-|.+|.|. .-|..++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 67777777777777777777777 4444443
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=6.7e-13 Score=135.82 Aligned_cols=198 Identities=38% Similarity=0.521 Sum_probs=113.0
Q ss_pred EEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCC-CCcEEEeecccCCCCCcccccCCccccEeeeec
Q 011820 148 SLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLS-NLKKLVVSGNWLNGRIPDSFGYLSELLILDLSR 226 (477)
Q Consensus 148 ~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 226 (477)
.+++..+ .+... +..+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~-~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLN-RLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeecccc-ccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4556555 33222 233445566777777777776 5666565553 6777777777766 4444566667777777777
Q ss_pred ccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCC
Q 011820 227 NSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLK 306 (477)
Q Consensus 227 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~ 306 (477)
|+++ .+|......+.|+.|++++|.++ .+|........|++|.+++|... ..+..+.++.++..+.+.+|++. .++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 7666 44544445666666666666666 55554444555666666666432 33444555566666666666554 212
Q ss_pred hhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChh
Q 011820 307 SLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISP 356 (477)
Q Consensus 307 ~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 356 (477)
. .+..++.++.|++++|.++ .++. ++.+.+++.|++++|.++...|.
T Consensus 249 ~-~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 E-SIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred c-hhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 1 3444555666666666655 2222 55556666666666665544443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=5.8e-14 Score=141.01 Aligned_cols=196 Identities=32% Similarity=0.419 Sum_probs=144.4
Q ss_pred CCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcC
Q 011820 111 ELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLG 190 (477)
Q Consensus 111 ~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~ 190 (477)
.++--...|++.|.+. ++|..... +-.|+.+.|..| .+. .||..+.++..|++|+|+.|+++ .+|..++
T Consensus 73 ~ltdt~~aDlsrNR~~------elp~~~~~--f~~Le~liLy~n-~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC 141 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS------ELPEEACA--FVSLESLILYHN-CIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC 141 (722)
T ss_pred cccchhhhhccccccc------cCchHHHH--HHHHHHHHHHhc-cce-ecchhhhhhhHHHHhhhccchhh-cCChhhh
Confidence 4555566778888776 56665322 356777777777 355 67888888888888888888888 7788888
Q ss_pred CCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEe
Q 011820 191 RLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLL 270 (477)
Q Consensus 191 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 270 (477)
.|+ |+.|.+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..|
T Consensus 142 ~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~l 216 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRL 216 (722)
T ss_pred cCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeee
Confidence 777 888888888887 67777787888888888888887 67788888888888888888887 667777744 47788
Q ss_pred eccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhh---cCCCCccEEEccCCC
Q 011820 271 DLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEW---KNLQNLVILDLSNTG 325 (477)
Q Consensus 271 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~---~~l~~L~~L~Ls~n~ 325 (477)
|++.|+++ .+|..|.+|+.|++|-|.+|.+.. -| ..+ +...-.++|+..-++
T Consensus 217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PP-AqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PP-AQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecccCcee-ecchhhhhhhhheeeeeccCCCCC-Ch-HHHHhccceeeeeeecchhcc
Confidence 88888887 778888888888888888888862 22 222 122334666666663
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=2.6e-12 Score=138.21 Aligned_cols=113 Identities=25% Similarity=0.379 Sum_probs=100.2
Q ss_pred CCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEe
Q 011820 290 SLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYL 369 (477)
Q Consensus 290 ~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 369 (477)
.++.|+|++|.+.|.+|. .+..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..++++++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 378899999999999997 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcCeeecCCChhhhccccCcccccCCCCCCCC
Q 011820 370 NGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYP 403 (477)
Q Consensus 370 s~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~ 403 (477)
++|+++|.+|............+.+.+|+.+|+.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 9999999999764321111245678899999986
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=1.9e-12 Score=132.50 Aligned_cols=197 Identities=40% Similarity=0.540 Sum_probs=106.7
Q ss_pred EEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCc-cccEeeeecccCCCCccccccCCcCCcEEecccC
Q 011820 173 SLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLS-ELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNN 251 (477)
Q Consensus 173 ~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 251 (477)
.+++..|.+... +..+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 455555555322 223344455666666666665 3444444443 6666666666655 34445556666666666666
Q ss_pred cCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCch
Q 011820 252 QLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVP 331 (477)
Q Consensus 252 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip 331 (477)
+++ .+|...+..++|+.|++++|+++ .+|..+.....|+++.+++|... .++. .+..+.++..+.+.+|++. .++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch-hhhhcccccccccCCceee-ecc
Confidence 665 44444445566666666666665 44444444445666666666432 1221 3445555555666666554 234
Q ss_pred hhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 332 EFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 332 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
..+..++.++.|++++|+++ .++. ++.+.+++.|++++|.++...|
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 55555666666666666666 3333 5555666666666666654443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=2.1e-12 Score=123.19 Aligned_cols=255 Identities=21% Similarity=0.242 Sum_probs=138.5
Q ss_pred cchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCC----chhh-------hcCCCCCcE
Q 011820 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGP----IPTS-------LGHLMKLRS 173 (477)
Q Consensus 105 i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~----ip~~-------l~~l~~L~~ 173 (477)
+-+.+..+..++.++|++|.++. .....|. ..+.+ .++|+..++++- ++|. +|+. +..+++|++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~-EAa~~i~-~~L~~-~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGT-EAARAIA-KVLAS-KKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred HHHHhcccCceEEEeccCCchhH-HHHHHHH-HHHhh-cccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 44566778899999999987752 0000011 11122 367888888753 5654 4443 335667888
Q ss_pred EEcccCCCCCccchh----cCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecc
Q 011820 174 LVLLENGLSGELPTN----LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLS 249 (477)
Q Consensus 174 L~Ls~n~l~~~ip~~----l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 249 (477)
|+||+|.+.-.-++. +..++.|++|.|.+|.+.-.--..++. .|..|. .+ ...+.-+.|+++...
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICG 165 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEee
Confidence 888888776444433 345677788888777765211111110 111111 11 111223455555555
Q ss_pred cCcCCCC----CchhhcCCCCCCEeeccCCcCCc----cchHHhhcCCCCCEEEcccCCCCCc---CChhhhcCCCCccE
Q 011820 250 NNQLEGK----IPKEIGYLKNITLLDLRNNKFSG----ELTKSLQEMYSLEEMVFSNNPIGGD---LKSLEWKNLQNLVI 318 (477)
Q Consensus 250 ~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~---i~~~~~~~l~~L~~ 318 (477)
+|++... +...+...+.|+.+.+..|.+.. .+...+..+++|+.|||.+|.++-. .-...+..+++|++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 5555421 22334445566666666665541 2234556666666666666665421 11123445667777
Q ss_pred EEccCCCCCCCchhhh-----cCCCCCCEEecccccCCC----CChhhcCCCCCCCEEEeeCCcCe
Q 011820 319 LDLSNTGLAGEVPEFM-----AELKRLRFLGLSNNKLTG----TISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 319 L~Ls~n~l~~~ip~~l-----~~l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
|++++|.+...-...+ ...|+|+.|.+.+|.++- .+...+...+.|..|+|++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 7777777654433222 235777777777777763 23334555677888888888773
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=7.4e-12 Score=119.53 Aligned_cols=251 Identities=23% Similarity=0.290 Sum_probs=157.8
Q ss_pred EEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhh------hhhcCCCccEEEccCCCC
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISG------WENLAGSLESLEFRSNPG 156 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~------~~~~~~~L~~L~Ls~n~~ 156 (477)
.++.|+++ .|+++.--...+.+.+.+.++|+..++++-..+- ....+|... ... +++|++||||+| .
T Consensus 31 s~~~l~ls---gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR--~~~Ei~e~L~~l~~aL~~-~~~L~~ldLSDN-A 103 (382)
T KOG1909|consen 31 SLTKLDLS---GNTFGTEAARAIAKVLASKKELREVNLSDMFTGR--LKDEIPEALKMLSKALLG-CPKLQKLDLSDN-A 103 (382)
T ss_pred ceEEEecc---CCchhHHHHHHHHHHHhhcccceeeehHhhhcCC--cHHHHHHHHHHHHHHHhc-CCceeEeecccc-c
Confidence 58888885 3555432234567788899999999998754321 112444321 112 469999999999 5
Q ss_pred CCCCchhh----hcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCC
Q 011820 157 LTGPIPTS----LGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGP 232 (477)
Q Consensus 157 l~g~ip~~----l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 232 (477)
+.-.-+.. +.++..|++|.|.+|.+.-.--..++. .|..|. .+. ....-++|+++..++|++...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK-------KAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh-------ccCCCcceEEEEeeccccccc
Confidence 76544433 467899999999999986222122221 122222 111 112234566666666665422
Q ss_pred ----ccccccCCcCCcEEecccCcCCCC----CchhhcCCCCCCEeeccCCcCCc----cchHHhhcCCCCCEEEcccCC
Q 011820 233 ----LPLSLGGLTSLLKFDLSNNQLEGK----IPKEIGYLKNITLLDLRNNKFSG----ELTKSLQEMYSLEEMVFSNNP 300 (477)
Q Consensus 233 ----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~ 300 (477)
+...+...+.|+.+.+..|.+... +...+..+++|+.|||..|.|+. .+...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 334455566777777777766421 23456678888888888887763 244566777888888888887
Q ss_pred CCCcCC----hhhhcCCCCccEEEccCCCCCCC----chhhhcCCCCCCEEecccccCC
Q 011820 301 IGGDLK----SLEWKNLQNLVILDLSNTGLAGE----VPEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 301 l~g~i~----~~~~~~l~~L~~L~Ls~n~l~~~----ip~~l~~l~~L~~L~Ls~N~l~ 351 (477)
+...-. ...-...++|++|.+.+|.++.. +-..+...+.|+.|+|++|++.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 763211 11123468899999999988743 2334566889999999999993
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=9.6e-12 Score=116.34 Aligned_cols=142 Identities=24% Similarity=0.353 Sum_probs=105.7
Q ss_pred CCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhh
Q 011820 231 GPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEW 310 (477)
Q Consensus 231 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~ 310 (477)
|..-..+.....|+++||++|.++ .+.+...-.|.++.|++++|.+.. +. .+..+++|+.||||+|.++ .+.. .-
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~G-wh 348 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVG-WH 348 (490)
T ss_pred CceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhh-hH
Confidence 333344445567888888888887 666667777888888888888873 22 3778888999999999887 3332 22
Q ss_pred cCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCC-ChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 311 KNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGT-ISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 311 ~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
..+.++++|.|+.|.+. --..+..+-+|..||+++|+|... --..++++|.|+.+.|.+|++.+.+.
T Consensus 349 ~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 34678899999999875 223467778899999999998732 23468999999999999999987654
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.2e-12 Score=123.66 Aligned_cols=208 Identities=24% Similarity=0.240 Sum_probs=116.5
Q ss_pred cCCCCCcEEEcccCCCCCccc--hhcCCCCCCcEEEeecccCCCCC--cccccCCccccEeeeecccCCCCccccc-cCC
Q 011820 166 GHLMKLRSLVLLENGLSGELP--TNLGRLSNLKKLVVSGNWLNGRI--PDSFGYLSELLILDLSRNSLSGPLPLSL-GGL 240 (477)
Q Consensus 166 ~~l~~L~~L~Ls~n~l~~~ip--~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l 240 (477)
+++.+|+++.|.+..+. ..+ .....+++++.|||+.|-+.... ......+++|+.|+++.|++........ ..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 35566666666666654 222 23455666777777776655322 1234566777777777776653222211 245
Q ss_pred cCCcEEecccCcCCCC-CchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEE
Q 011820 241 TSLLKFDLSNNQLEGK-IPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVIL 319 (477)
Q Consensus 241 ~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L 319 (477)
+.|+.|.++.|.++-. +-..+..+|+|+.|+|..|...+.-.....-++.|+.|||++|++-..-.....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 6677777777776521 223344567777777777742222222233455677777777776522111234566777777
Q ss_pred EccCCCCCCC-chhh-----hcCCCCCCEEecccccCCCCCh--hhcCCCCCCCEEEeeCCcCe
Q 011820 320 DLSNTGLAGE-VPEF-----MAELKRLRFLGLSNNKLTGTIS--PKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 320 ~Ls~n~l~~~-ip~~-----l~~l~~L~~L~Ls~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+++.+.+... +|+. ....++|++|+++.|++.. .+ ..+..+++|+.|....|.|+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccc
Confidence 7777776532 2222 2345777777777777752 22 22444566666776677665
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.6e-11 Score=120.35 Aligned_cols=208 Identities=25% Similarity=0.251 Sum_probs=104.6
Q ss_pred CCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCC--chhhhcCCCCCcEEEcccCCCCCccchh
Q 011820 111 ELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGP--IPTSLGHLMKLRSLVLLENGLSGELPTN 188 (477)
Q Consensus 111 ~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~--ip~~l~~l~~L~~L~Ls~n~l~~~ip~~ 188 (477)
++++|+...|.++.... .+.......+++++.|||+.| -+..- +-.....|++|+.|+|+.|.+.-...+.
T Consensus 119 n~kkL~~IsLdn~~V~~------~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVED------AGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hHHhhhheeecCccccc------cchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 56666666666655432 111112233567777777766 44422 1223456677777777777665222111
Q ss_pred c-CCCCCCcEEEeecccCCCC-CcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCc--hhhcCC
Q 011820 189 L-GRLSNLKKLVVSGNWLNGR-IPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIP--KEIGYL 264 (477)
Q Consensus 189 l-~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--~~l~~l 264 (477)
. ..+++|+.|.|+.|.++.. +-..+..+|+|+.|+|..|.....-......+..|++|+|++|.+- ..+ ...+.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccc
Confidence 1 2356666777776666521 2222344566666666666422222233334556666666666654 122 234556
Q ss_pred CCCCEeeccCCcCCcc-chHH-----hhcCCCCCEEEcccCCCCCcCCh-hhhcCCCCccEEEccCCCCC
Q 011820 265 KNITLLDLRNNKFSGE-LTKS-----LQEMYSLEEMVFSNNPIGGDLKS-LEWKNLQNLVILDLSNTGLA 327 (477)
Q Consensus 265 ~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~g~i~~-~~~~~l~~L~~L~Ls~n~l~ 327 (477)
+.|+.|+++.+.+... .|+. ....++|++|++..|++. +.+. ..+..+++|+.|.+..|.++
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 6666666666655421 1111 234556666666666654 1111 12233445555555555554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.9e-10 Score=101.64 Aligned_cols=104 Identities=33% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCcEEEcccCCCCCccchhcC-CCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccc-cCCcCCcEEe
Q 011820 170 KLRSLVLLENGLSGELPTNLG-RLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSL-GGLTSLLKFD 247 (477)
Q Consensus 170 ~L~~L~Ls~n~l~~~ip~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ 247 (477)
++++|+|++|.|+ .+ +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|+++. +.+.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 4455555555554 22 2233 344555555555555422 134444555555555555542 22222 2345555555
Q ss_pred cccCcCCCCC-chhhcCCCCCCEeeccCCcCC
Q 011820 248 LSNNQLEGKI-PKEIGYLKNITLLDLRNNKFS 278 (477)
Q Consensus 248 L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~ 278 (477)
+++|++...- -..+..+++|++|++.+|.++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555543210 123444555555555555444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=5.3e-10 Score=99.99 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=2.8
Q ss_pred CCCCCEeeccCCcCC
Q 011820 264 LKNITLLDLRNNKFS 278 (477)
Q Consensus 264 l~~L~~L~Ls~N~l~ 278 (477)
++.|++|++++|+++
T Consensus 63 L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 63 LPRLKTLDLSNNRIS 77 (175)
T ss_dssp -TT--EEE--SS---
T ss_pred hhhhhhcccCCCCCC
Confidence 333444444444333
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=8.1e-11 Score=110.23 Aligned_cols=134 Identities=27% Similarity=0.340 Sum_probs=80.5
Q ss_pred ccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCC
Q 011820 213 FGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLE 292 (477)
Q Consensus 213 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 292 (477)
+...+.|+++||++|.++ .+.++..-.|.++.|++++|.+. .+ ..+..+++|+.|||++|.++ .+..+-.++-+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 334455666666666665 45555555666666666666665 22 22556666677777776665 2333344555666
Q ss_pred EEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCC-chhhhcCCCCCCEEecccccCCCC
Q 011820 293 EMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGE-VPEFMAELKRLRFLGLSNNKLTGT 353 (477)
Q Consensus 293 ~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~-ip~~l~~l~~L~~L~Ls~N~l~g~ 353 (477)
+|.|+.|.+. .+. .+..+-+|..||+++|++... --..++++|.|+.+.|.+|.+.+.
T Consensus 356 tL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 6777777654 222 234456677777777776521 123467778888888888887743
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-09 Score=120.77 Aligned_cols=82 Identities=33% Similarity=0.448 Sum_probs=42.0
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
++.|++|||++|. --+.+|..|++|-+||+|++++..++ .+|..++++..|.+|++..+.....+|.....+++|++|
T Consensus 570 m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 3555555555552 22345555555555555555555555 455555555555555555544433334444445555555
Q ss_pred eeec
Q 011820 223 DLSR 226 (477)
Q Consensus 223 ~L~~ 226 (477)
.+..
T Consensus 648 ~l~~ 651 (889)
T KOG4658|consen 648 RLPR 651 (889)
T ss_pred Eeec
Confidence 5543
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=1.9e-10 Score=118.46 Aligned_cols=246 Identities=30% Similarity=0.340 Sum_probs=147.0
Q ss_pred CCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcC
Q 011820 111 ELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLG 190 (477)
Q Consensus 111 ~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~ 190 (477)
.+..++.+++..|.+.. +-.. +.. +.+|+.|++.+| .+.. +...+..+++|++|++++|.|+..- .+.
T Consensus 70 ~l~~l~~l~l~~n~i~~------~~~~-l~~-~~~l~~l~l~~n-~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~ 137 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK------ILNH-LSK-LKSLEALDLYDN-KIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLS 137 (414)
T ss_pred HhHhHHhhccchhhhhh------hhcc-ccc-ccceeeeecccc-chhh-cccchhhhhcchheecccccccccc--chh
Confidence 45566666666665542 1000 111 467777888777 5663 3333666777888888888777432 355
Q ss_pred CCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCcc-ccccCCcCCcEEecccCcCCCCCchhhcCCCCCCE
Q 011820 191 RLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLP-LSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITL 269 (477)
Q Consensus 191 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 269 (477)
.++.|+.|++++|.++.. ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.. ...+..+..+..
T Consensus 138 ~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~ 212 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVL 212 (414)
T ss_pred hccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHH
Confidence 666677888888877632 334557777777888777764332 1 4567777777777777652 223344445555
Q ss_pred eeccCCcCCccchHHhhcCC--CCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEeccc
Q 011820 270 LDLRNNKFSGELTKSLQEMY--SLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSN 347 (477)
Q Consensus 270 L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~ 347 (477)
+++..|.++..-+ +..+. .|+.+++++|++. .++ ..+..+..+..|++.+|++... ..+...+.+..+.+..
T Consensus 213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLND 286 (414)
T ss_pred hhcccccceeccC--cccchhHHHHHHhcccCccc-ccc-ccccccccccccchhhcccccc--ccccccchHHHhccCc
Confidence 5677776652211 11122 2677788888776 332 1345567778888888777532 1234455666667777
Q ss_pred ccCCCC---Chhh-cCCCCCCCEEEeeCCcCeeecC
Q 011820 348 NKLTGT---ISPK-LATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 348 N~l~g~---ip~~-l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
|.+... .... ....+.+..+.+.+|+.....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred chhcchhhhhccccccccccccccccccCccccccc
Confidence 766521 1111 4566778888888888876554
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=4.6e-10 Score=115.56 Aligned_cols=217 Identities=30% Similarity=0.369 Sum_probs=155.7
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+..++.++++.| .+. .+-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n-~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchh-hhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 467777888887 455 33445778899999999999998 4444477889999999999999865 345677789999
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchh-hcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCC
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKE-IGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPI 301 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 301 (477)
++.+|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 9999998732 455568899999999999874333 2 46788899999999987632 2333444555558888877
Q ss_pred CCcCChhhhcCCC--CccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 302 GGDLKSLEWKNLQ--NLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 302 ~g~i~~~~~~~l~--~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+ .+.. ..... +|+.+++++|.+. .++..+..+..+..|++.+|++...- .+...+.+..+....|++.
T Consensus 221 ~-~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 S-KLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred e-eccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 6 2221 12223 3889999999987 44456677888999999999888532 2445566777777777765
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=5.3e-09 Score=76.90 Aligned_cols=61 Identities=39% Similarity=0.491 Sum_probs=40.4
Q ss_pred CCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcC
Q 011820 314 QNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNL 374 (477)
Q Consensus 314 ~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 374 (477)
++|++|++++|+++...+.+|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766644445666677777777777777655555667777777777777654
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=1.7e-08 Score=111.65 Aligned_cols=204 Identities=24% Similarity=0.279 Sum_probs=135.2
Q ss_pred cCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCC-CCCCchhhhcCCCCCcEEEcccCCCCCccchh
Q 011820 110 FELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPG-LTGPIPTSLGHLMKLRSLVLLENGLSGELPTN 188 (477)
Q Consensus 110 ~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~-l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~ 188 (477)
.+....+...+-+|.+. .++.. ..++.|++|-+..|.. +.-..+..|..++.|++|||++|.--+.+|+.
T Consensus 520 ~~~~~~rr~s~~~~~~~------~~~~~---~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE------HIAGS---SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred cchhheeEEEEeccchh------hccCC---CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 34466777777777664 33332 1246799999988832 33233344778999999999998877799999
Q ss_pred cCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcC--CCCCchhhcCCCC
Q 011820 189 LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQL--EGKIPKEIGYLKN 266 (477)
Q Consensus 189 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l--~~~~p~~l~~l~~ 266 (477)
++++-+||+|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+++|++|.+..... +...-..+.++.+
T Consensus 591 I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 999999999999999998 8999999999999999998876666677777799999999976542 2233344556666
Q ss_pred CCEeeccCCcCCccchHHhhcCCCCC----EEEcccCCCCCcCChhhhcCCCCccEEEccCCCCC
Q 011820 267 ITLLDLRNNKFSGELTKSLQEMYSLE----EMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLA 327 (477)
Q Consensus 267 L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~ 327 (477)
|+.+....... .+-..+..+..|. .+.+.++... ... ..+..+.+|+.|.+.++.+.
T Consensus 670 L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~-~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 670 LENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLI-SSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eee-cccccccCcceEEEEcCCCc
Confidence 66665543322 1111222222222 2222222221 111 13455677777777777665
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=1.5e-08 Score=74.51 Aligned_cols=38 Identities=45% Similarity=0.567 Sum_probs=14.1
Q ss_pred CCCCCCcEEEeecccCCCCCcccccCCccccEeeeecc
Q 011820 190 GRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRN 227 (477)
Q Consensus 190 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 227 (477)
.++++|++|++++|.++...|..|..+++|++|++++|
T Consensus 22 ~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 22 SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 33333333333333333333333333333333333333
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.3e-08 Score=95.50 Aligned_cols=210 Identities=22% Similarity=0.262 Sum_probs=110.4
Q ss_pred hhhcCCCccEEEccCCCCCCC--CchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCC-CcccccC
Q 011820 139 WENLAGSLESLEFRSNPGLTG--PIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGR-IPDSFGY 215 (477)
Q Consensus 139 ~~~~~~~L~~L~Ls~n~~l~g--~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~ 215 (477)
+...++.++++||.+| .++. .|-..+.++|.|++|+|+.|.++..|-..=....+|++|.|.+..+.-. ....+..
T Consensus 66 ~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 3444677888888887 5653 2334456788888888888877643322113456777777777766532 2234456
Q ss_pred CccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCch--hhcCCCCCCEeeccCCcCCccchHHhhcCCCCCE
Q 011820 216 LSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPK--EIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEE 293 (477)
Q Consensus 216 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 293 (477)
+|.++.|+++.|.+. .+++..|..+..-|. .+...+.+..+.++-|++. .-.+++..
T Consensus 145 lP~vtelHmS~N~~r--------------q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~-------r~Fpnv~s 203 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLR--------------QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS-------RIFPNVNS 203 (418)
T ss_pred chhhhhhhhccchhh--------------hhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-------hhcccchh
Confidence 677777777766432 222333333221111 1111222222222222222 22345566
Q ss_pred EEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCC-chhhhcCCCCCCEEecccccCCCCChh------hcCCCCCCCE
Q 011820 294 MVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGE-VPEFMAELKRLRFLGLSNNKLTGTISP------KLATMPCVSA 366 (477)
Q Consensus 294 L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~-ip~~l~~l~~L~~L~Ls~N~l~g~ip~------~l~~l~~L~~ 366 (477)
+.+..|++...-....+..++.+..|+|+.|++..- --+.+.+++.|..|.+++|.+...+-. -++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 666666654333323344456666677777766421 224456677777777777766543221 2456666666
Q ss_pred EEee
Q 011820 367 LYLN 370 (477)
Q Consensus 367 L~Ls 370 (477)
|+=+
T Consensus 284 LNGs 287 (418)
T KOG2982|consen 284 LNGS 287 (418)
T ss_pred ecCc
Confidence 5533
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=2.3e-09 Score=111.08 Aligned_cols=200 Identities=26% Similarity=0.301 Sum_probs=96.4
Q ss_pred CCCCcEEEeecccCCCCC-cccccCCccccEeeeecccCCCCccccccCC-cCCcEEecccCcCC----------CCCch
Q 011820 192 LSNLKKLVVSGNWLNGRI-PDSFGYLSELLILDLSRNSLSGPLPLSLGGL-TSLLKFDLSNNQLE----------GKIPK 259 (477)
Q Consensus 192 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~----------~~~p~ 259 (477)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+.. ...+..+ ..|++|. ..|.++ |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhcccccc
Confidence 344555555433222222 5567788899999999988763 1111111 1233321 112211 11111
Q ss_pred hhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCC
Q 011820 260 EIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKR 339 (477)
Q Consensus 260 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~ 339 (477)
.+ ..-.|.+.+.+.|.+. .+.+++.-++.|+.|+|++|+++ ... .+..+++|++|||++|.+. .+|..-..-.+
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK 233 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhc-cccccchhhhh
Confidence 11 0224555556666555 44455555566666666666665 222 3445566666666666665 33332111123
Q ss_pred CCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC-hhhhccccCcccccCCCCCCCC
Q 011820 340 LRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS-EWFYGKMGRRFGAWNNPNLCYP 403 (477)
Q Consensus 340 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~~~~~~~~N~~lc~~ 403 (477)
|+.|++++|.++.. ..+.++.+|+.||+++|-+++--... .|....+ ..+.+.|||..|.+
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L-~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL-IVLWLEGNPLCCAP 295 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH-HHHhhcCCccccCH
Confidence 66666666666522 23455666666666666655432211 1111111 23445566665553
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.62 E-value=1e-09 Score=113.55 Aligned_cols=199 Identities=26% Similarity=0.295 Sum_probs=133.3
Q ss_pred CCCCcEEEcccCCCCCcc-chhcCCCCCCcEEEeecccCCCCCcccccCC-ccccEeeeecccCC----------CCccc
Q 011820 168 LMKLRSLVLLENGLSGEL-PTNLGRLSNLKKLVVSGNWLNGRIPDSFGYL-SELLILDLSRNSLS----------GPLPL 235 (477)
Q Consensus 168 l~~L~~L~Ls~n~l~~~i-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~----------~~~p~ 235 (477)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.|.++.+.. ...+..+ ..|++|-.. |.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence 444555555433222222 6678889999999999998863 1111111 233333222 2111 11111
Q ss_pred cccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCC
Q 011820 236 SLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQN 315 (477)
Q Consensus 236 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~ 315 (477)
++ ....|.+.+.++|.+. .+-..+.-++.|+.|+|++|+++..- .+..+++|++|||++|.+. .+|...-.++.
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK- 233 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-
Confidence 11 1235778888899887 66677778889999999999998433 7888999999999999987 67765444554
Q ss_pred ccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCC-hhhcCCCCCCCEEEeeCCcCeee
Q 011820 316 LVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTI-SPKLATMPCVSALYLNGNNLSGE 377 (477)
Q Consensus 316 L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ 377 (477)
|+.|.+++|.++ ++ ..+.++++|+.||+++|-|.+.- -.-+..+..|+.|.|.+|++-+.
T Consensus 234 L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999999999987 33 34678899999999999888631 11244567888999999998753
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.9e-09 Score=97.04 Aligned_cols=194 Identities=21% Similarity=0.186 Sum_probs=109.0
Q ss_pred CCcEEEcccCCCCC-ccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeeccc-CCCC-ccccccCCcCCcEE
Q 011820 170 KLRSLVLLENGLSG-ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNS-LSGP-LPLSLGGLTSLLKF 246 (477)
Q Consensus 170 ~L~~L~Ls~n~l~~-~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~L~~L 246 (477)
.|++|||++..++. .+-.-+..+.+|+.|.|.++++...+...+.+-.+|+.|+++.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 36666666655542 122223455666666666666666555566666666666666543 2211 11234566777777
Q ss_pred ecccCcCCCCCch-hhcC-CCCCCEeeccCCcC---CccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEc
Q 011820 247 DLSNNQLEGKIPK-EIGY-LKNITLLDLRNNKF---SGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDL 321 (477)
Q Consensus 247 ~L~~N~l~~~~p~-~l~~-l~~L~~L~Ls~N~l---~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~L 321 (477)
+++.+.+....-. .+.. -++|+.|++++..- ...+..-..++++|.+|||++|..-..--...+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777765533211 1111 24677777776521 12334445678888888888875322211124567888999998
Q ss_pred cCCCCCCCchhh---hcCCCCCCEEecccccCCCCChhhcCCCCCCC
Q 011820 322 SNTGLAGEVPEF---MAELKRLRFLGLSNNKLTGTISPKLATMPCVS 365 (477)
Q Consensus 322 s~n~l~~~ip~~---l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~ 365 (477)
+.|.. .+|.. +...|.|.+||+-++-=.+..--....+++|+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 88875 45654 35678899998877543332222233445544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.7e-08 Score=94.82 Aligned_cols=220 Identities=20% Similarity=0.223 Sum_probs=148.0
Q ss_pred ccEEEccCCCCCCCCchhhhcCCCC--CcEEEcccCCCCCc-cchhcCC-CCCCcEEEeecccCCC-CCcccccCCcccc
Q 011820 146 LESLEFRSNPGLTGPIPTSLGHLMK--LRSLVLLENGLSGE-LPTNLGR-LSNLKKLVVSGNWLNG-RIPDSFGYLSELL 220 (477)
Q Consensus 146 L~~L~Ls~n~~l~g~ip~~l~~l~~--L~~L~Ls~n~l~~~-ip~~l~~-l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~ 220 (477)
=+.+|+.+- . .-|..++.+.+ ...+.+....+... +.+.+.- -+.|++|||++..++. .+-..+..+.+|+
T Consensus 138 W~~lDl~~r-~---i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk 213 (419)
T KOG2120|consen 138 WQTLDLTGR-N---IHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLK 213 (419)
T ss_pred eeeeccCCC-c---cChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhh
Confidence 356677554 2 33555555433 33444443322211 1122221 2469999999988873 2233467889999
Q ss_pred EeeeecccCCCCccccccCCcCCcEEecccCc-CCCC-CchhhcCCCCCCEeeccCCcCCccchH-Hhhc-CCCCCEEEc
Q 011820 221 ILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQ-LEGK-IPKEIGYLKNITLLDLRNNKFSGELTK-SLQE-MYSLEEMVF 296 (477)
Q Consensus 221 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~-l~~L~~L~L 296 (477)
.|.+.++++...+...++.-.+|+.|+++.+. ++.. ..-.+.+++.|..|+++.+.++...-. .+.+ -++|+.|+|
T Consensus 214 ~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl 293 (419)
T KOG2120|consen 214 NLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL 293 (419)
T ss_pred hccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence 99999999999999999999999999999763 3321 123466899999999999987754322 2222 257888999
Q ss_pred ccCCCC---CcCChhhhcCCCCccEEEccCCC-CCCCchhhhcCCCCCCEEecccccCCCCChhh---cCCCCCCCEEEe
Q 011820 297 SNNPIG---GDLKSLEWKNLQNLVILDLSNTG-LAGEVPEFMAELKRLRFLGLSNNKLTGTISPK---LATMPCVSALYL 369 (477)
Q Consensus 297 s~N~l~---g~i~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~---l~~l~~L~~L~L 369 (477)
++..-. ..+.. ....+++|.+|||++|. ++...-..|.+++.|++|.++.|.. .+|.. +...|+|.+||+
T Consensus 294 sG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 294 SGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEe
Confidence 886421 12222 34678999999999975 5555566788899999999999863 35554 467789999998
Q ss_pred eCC
Q 011820 370 NGN 372 (477)
Q Consensus 370 s~N 372 (477)
.+.
T Consensus 371 ~g~ 373 (419)
T KOG2120|consen 371 FGC 373 (419)
T ss_pred ccc
Confidence 753
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=2.8e-07 Score=85.76 Aligned_cols=244 Identities=18% Similarity=0.138 Sum_probs=119.4
Q ss_pred hhccCCCCCCEEEcccCCCCCCCCCCccChhh--hhhcCCCccEEEccCCCCCCCC----chh-------hhcCCCCCcE
Q 011820 107 EQLFELKHLKSLSFFNCFTSSQQHPTTIPISG--WENLAGSLESLEFRSNPGLTGP----IPT-------SLGHLMKLRS 173 (477)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~--~~~~~~~L~~L~Ls~n~~l~g~----ip~-------~l~~l~~L~~ 173 (477)
..+..+..++.++||+|.++. .-.... ....-.+|+..+++.- ++|. +++ .+.+|++|+.
T Consensus 24 eel~~~d~~~evdLSGNtigt-----EA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGT-----EAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred HHHHhhcceeEEeccCCcccH-----HHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 345557888888999887653 110000 0011256777777653 4543 222 3456777888
Q ss_pred EEcccCCCCCccchh----cCCCCCCcEEEeecccCCCC----Ccccc---------cCCccccEeeeecccCCCCc---
Q 011820 174 LVLLENGLSGELPTN----LGRLSNLKKLVVSGNWLNGR----IPDSF---------GYLSELLILDLSRNSLSGPL--- 233 (477)
Q Consensus 174 L~Ls~n~l~~~ip~~----l~~l~~L~~L~L~~n~l~~~----~p~~l---------~~l~~L~~L~L~~N~l~~~~--- 233 (477)
.+||.|.+....|+. +++-+.|++|.+++|.+.-. +..++ .+-|.|++....+|++..--
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 888888776655544 34556777777777765411 11111 12244555555555543110
Q ss_pred -cccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCc---CChhh
Q 011820 234 -PLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGD---LKSLE 309 (477)
Q Consensus 234 -p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~---i~~~~ 309 (477)
...+.....|+++.+.+|.+...--.. .+...+..+.+|+.|||..|.++-. +-...
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~-------------------L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTM-------------------LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHH-------------------HHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 011122234444444444443110000 0111233445555555555554411 00112
Q ss_pred hcCCCCccEEEccCCCCCCCchhhh------cCCCCCCEEecccccCCCCChhh-------cCCCCCCCEEEeeCCcCee
Q 011820 310 WKNLQNLVILDLSNTGLAGEVPEFM------AELKRLRFLGLSNNKLTGTISPK-------LATMPCVSALYLNGNNLSG 376 (477)
Q Consensus 310 ~~~l~~L~~L~Ls~n~l~~~ip~~l------~~l~~L~~L~Ls~N~l~g~ip~~-------l~~l~~L~~L~Ls~N~l~g 376 (477)
+..++.|+.|.+.+|-++..-...+ ...|+|+.|-..+|...+.+-.. -.++|-|..|.+.+|.+..
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 3334455666666665543322221 12466666666666665533221 1345667777888888763
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=5.3e-07 Score=83.90 Aligned_cols=223 Identities=20% Similarity=0.251 Sum_probs=124.1
Q ss_pred CCCccEEEccCCCCCCCCc----hhhhcCCCCCcEEEcccCCC---CCccc-------hhcCCCCCCcEEEeecccCCCC
Q 011820 143 AGSLESLEFRSNPGLTGPI----PTSLGHLMKLRSLVLLENGL---SGELP-------TNLGRLSNLKKLVVSGNWLNGR 208 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~i----p~~l~~l~~L~~L~Ls~n~l---~~~ip-------~~l~~l~~L~~L~L~~n~l~~~ 208 (477)
+..++.++||+| .+...- ...|.+-.+|+..+++.-.. ...+| +.+-+|++|+..+||.|.+...
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 456777777777 344332 22344455666666654221 11222 2234556666666666666544
Q ss_pred Cccc----ccCCccccEeeeecccCCCCccc-cccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccc--
Q 011820 209 IPDS----FGYLSELLILDLSRNSLSGPLPL-SLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGEL-- 281 (477)
Q Consensus 209 ~p~~----l~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-- 281 (477)
.|+. +++-+.|++|.+++|.+- .+.. -++ ..|.+ |.. .+...+-|.|+++....|++....
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rig--kal~~--la~-------nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIG--KALFH--LAY-------NKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC-ccchhHHH--HHHHH--HHH-------HhhhccCCCceEEEeccchhccCcHH
Confidence 4432 233445555555555442 1110 000 00000 000 011234567888888888775211
Q ss_pred --hHHhhcCCCCCEEEcccCCCCCc-CCh---hhhcCCCCccEEEccCCCCCCCc----hhhhcCCCCCCEEecccccCC
Q 011820 282 --TKSLQEMYSLEEMVFSNNPIGGD-LKS---LEWKNLQNLVILDLSNTGLAGEV----PEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 282 --p~~l~~l~~L~~L~Ls~N~l~g~-i~~---~~~~~l~~L~~L~Ls~n~l~~~i----p~~l~~l~~L~~L~Ls~N~l~ 351 (477)
...+..-..|+++.+..|.+... +.. ....-+.+|+.|||.+|-++-.- ...+..++.|+.|.+..|-++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 11233335788888988887632 111 11234689999999999987432 344566788999999999988
Q ss_pred CCChhhc------CCCCCCCEEEeeCCcCeeec
Q 011820 352 GTISPKL------ATMPCVSALYLNGNNLSGEL 378 (477)
Q Consensus 352 g~ip~~l------~~l~~L~~L~Ls~N~l~g~i 378 (477)
..-..++ ...|+|..|-..||...|.+
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 6543332 13578999999999887654
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=1e-07 Score=79.90 Aligned_cols=110 Identities=23% Similarity=0.297 Sum_probs=67.4
Q ss_pred CCEeeccCCcCCccch---HHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEE
Q 011820 267 ITLLDLRNNKFSGELT---KSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFL 343 (477)
Q Consensus 267 L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L 343 (477)
+..++|+++.+- -++ ..+.....|+..+|++|.+. .+|......++.++.|++++|+++ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555555443 122 23334445555667777665 455433334556777777777776 667777777777777
Q ss_pred ecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 344 GLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 344 ~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
+++.|.+. ..|..+..+.++-.||..+|... +||..
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 77777777 55666666777777777777665 56655
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=8.9e-08 Score=80.26 Aligned_cols=135 Identities=24% Similarity=0.227 Sum_probs=91.3
Q ss_pred CcEEecccCcCCCCCch---hhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEE
Q 011820 243 LLKFDLSNNQLEGKIPK---EIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVIL 319 (477)
Q Consensus 243 L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L 319 (477)
+..++|+.+.+- .+++ .+.....|+..+|++|.+....+..-...+.++.|+|++|.++ ++|. .+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPe-E~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPE-ELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchH-HHhhhHHhhhc
Confidence 445566666553 3333 3344556666778888777444444445567788888888887 7776 47778888888
Q ss_pred EccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCCh
Q 011820 320 DLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSE 382 (477)
Q Consensus 320 ~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 382 (477)
+++.|.+. ..|..+..+.+|-.||..+|.+. +||-.+-.-+.....++.++++.+..|...
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 88888887 55666777888888888888887 666554433444455667788888777554
No 52
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.07 E-value=5e-06 Score=56.20 Aligned_cols=36 Identities=39% Similarity=0.881 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCC------CCCCCCCCCCCCCCCCCCCCcEeC
Q 011820 37 KAEQEALYTAIKGFVG------NWWNGSNLYPDPCGWTPIEGVSCD 76 (477)
Q Consensus 37 ~~~~~aL~~~~~~~~~------~~W~~~~~~~d~C~w~~~~Gv~C~ 76 (477)
++|++||++||+++.. .+|+... .++||.|. ||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~---GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWS---GVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCST---TEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeec---cEEeC
Confidence 4799999999999873 4787642 25999995 99996
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=2.1e-06 Score=80.94 Aligned_cols=221 Identities=20% Similarity=0.153 Sum_probs=133.3
Q ss_pred CCchhhhcCCCCCcEEEcccCCCCCccc-hhc-CCCCCCcEEEeecccCCC--CCcccccCCccccEeeeecccCCCCcc
Q 011820 159 GPIPTSLGHLMKLRSLVLLENGLSGELP-TNL-GRLSNLKKLVVSGNWLNG--RIPDSFGYLSELLILDLSRNSLSGPLP 234 (477)
Q Consensus 159 g~ip~~l~~l~~L~~L~Ls~n~l~~~ip-~~l-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p 234 (477)
|..+-.+.....++.|.+.++.+...-- ..| ...+.++.+||.+|.++. .+...+.++|.|+.|+++.|.+...|-
T Consensus 35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence 3333344445556666776666542111 122 246788999999998873 334456788999999999998875543
Q ss_pred ccccCCcCCcEEecccCcCCCC-CchhhcCCCCCCEeeccCCcCCccc--hHHhhcC-CCCCEEEcccCCCCCcCCh-hh
Q 011820 235 LSLGGLTSLLKFDLSNNQLEGK-IPKEIGYLKNITLLDLRNNKFSGEL--TKSLQEM-YSLEEMVFSNNPIGGDLKS-LE 309 (477)
Q Consensus 235 ~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l-~~L~~L~Ls~N~l~g~i~~-~~ 309 (477)
.--....+|++|.|.+..+.-. ....+..+|.++.|.++.|.+.... ....... +.+.+|.+..|...-.... ..
T Consensus 115 ~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 115 SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhH
Confidence 2224567888888888777522 2344567778888888887443110 0111111 1233333333321100000 01
Q ss_pred hcCCCCccEEEccCCCCCCC-chhhhcCCCCCCEEecccccCCCC-ChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 310 WKNLQNLVILDLSNTGLAGE-VPEFMAELKRLRFLGLSNNKLTGT-ISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 310 ~~~l~~L~~L~Ls~n~l~~~-ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
..-+|++..+-+..|.+... --.....++.+..|+|+.|+|... --+.+..++.|..|.+++|++...+.
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 12367888888888877532 223455677888999999999753 22457889999999999999876554
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.3e-05 Score=54.34 Aligned_cols=36 Identities=39% Similarity=0.649 Sum_probs=17.2
Q ss_pred CCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 339 RLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 339 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+|++|++++|+++ .+|+.++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 34444555555555555555544
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=8.3e-06 Score=88.35 Aligned_cols=138 Identities=20% Similarity=0.286 Sum_probs=89.9
Q ss_pred CCccEEEccCCCCCCCCchhhhcC-CCCCcEEEcccCCCCC-ccchhcCCCCCCcEEEeecccCCCCCcccccCCccccE
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGH-LMKLRSLVLLENGLSG-ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLI 221 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~-l~~L~~L~Ls~n~l~~-~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 221 (477)
.+|++||+++...+...-|..++. ||+|+.|.+.+-.+.. ..-.-..++++|..||+++++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578888888876555555556654 7888888888766542 2233345778888888888887744 66778888888
Q ss_pred eeeecccCCC-CccccccCCcCCcEEecccCcCCCCC--ch----hhcCCCCCCEeeccCCcCCccchH
Q 011820 222 LDLSRNSLSG-PLPLSLGGLTSLLKFDLSNNQLEGKI--PK----EIGYLKNITLLDLRNNKFSGELTK 283 (477)
Q Consensus 222 L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--p~----~l~~l~~L~~L~Ls~N~l~~~~p~ 283 (477)
|.+.+=.+.. ..-..+.++++|+.||+|........ .. .-..+|+|+.||.+++.+...+-+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 8777655542 22234567788888888776544221 11 112467888888887777654443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=3.3e-05 Score=77.66 Aligned_cols=137 Identities=19% Similarity=0.322 Sum_probs=88.2
Q ss_pred hhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccC-CCCCcc
Q 011820 107 EQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLEN-GLSGEL 185 (477)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n-~l~~~i 185 (477)
+.+..+.++++|++++|.+. .+|. +..+|++|+++++..++ .+|..+. ++|++|++++| .+. .+
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~------sLP~-----LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sL 110 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIE------SLPV-----LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GL 110 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCc------ccCC-----CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cc
Confidence 44566789999999999776 5662 24679999999876664 5665552 58999999998 554 56
Q ss_pred chhcCCCCCCcEEEeecccCC--CCCcccccCCccccEeeeecccCC--CCccccccCCcCCcEEecccCcCCCCCchhh
Q 011820 186 PTNLGRLSNLKKLVVSGNWLN--GRIPDSFGYLSELLILDLSRNSLS--GPLPLSLGGLTSLLKFDLSNNQLEGKIPKEI 261 (477)
Q Consensus 186 p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 261 (477)
|. +|+.|++..+... +.+|. +|+.|.+.+++.. ..+|..+ .++|++|++++|... .+|..+
T Consensus 111 P~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L 175 (426)
T PRK15386 111 PE------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL 175 (426)
T ss_pred cc------ccceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc
Confidence 64 4777888766543 23333 4666666433211 1112111 157899999888755 344433
Q ss_pred cCCCCCCEeeccCC
Q 011820 262 GYLKNITLLDLRNN 275 (477)
Q Consensus 262 ~~l~~L~~L~Ls~N 275 (477)
. .+|+.|+++.+
T Consensus 176 P--~SLk~L~ls~n 187 (426)
T PRK15386 176 P--ESLQSITLHIE 187 (426)
T ss_pred c--ccCcEEEeccc
Confidence 2 57888888776
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.9e-05 Score=53.62 Aligned_cols=37 Identities=41% Similarity=0.600 Sum_probs=28.2
Q ss_pred CCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCC
Q 011820 314 QNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 314 ~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 351 (477)
++|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46788888888888 56777888888888888888887
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=1e-05 Score=87.57 Aligned_cols=142 Identities=22% Similarity=0.166 Sum_probs=99.4
Q ss_pred CCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCC
Q 011820 112 LKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGR 191 (477)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~ 191 (477)
-.+|++||+++...-.. .-|. ..+..+|+|+.|.+++-.-..+.+-.-..++++|+.||+|+.+++. + ..+++
T Consensus 121 r~nL~~LdI~G~~~~s~----~W~~-kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN----GWPK-KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhc----cHHH-HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhc
Confidence 35799999988543321 1111 2345689999999987522233334445789999999999999984 3 67899
Q ss_pred CCCCcEEEeecccCCC-CCcccccCCccccEeeeecccCCCCc--c----ccccCCcCCcEEecccCcCCCCCchh
Q 011820 192 LSNLKKLVVSGNWLNG-RIPDSFGYLSELLILDLSRNSLSGPL--P----LSLGGLTSLLKFDLSNNQLEGKIPKE 260 (477)
Q Consensus 192 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--p----~~l~~l~~L~~L~L~~N~l~~~~p~~ 260 (477)
+++|++|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..+|+|+.||.+++.+.+.+-+.
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 9999999998876653 22245778999999999987654321 1 11234889999999999887655443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00022 Score=71.88 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=47.9
Q ss_pred hcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecc-cCCCCccccccCCcCC
Q 011820 165 LGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRN-SLSGPLPLSLGGLTSL 243 (477)
Q Consensus 165 l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L 243 (477)
+..+.++++|++++|.++ .+|. + -.+|++|.++++.--..+|..+. ++|+.|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence 556788999999999887 5662 1 23688888887443335555442 46778888777 333 3443 35
Q ss_pred cEEecccCcC
Q 011820 244 LKFDLSNNQL 253 (477)
Q Consensus 244 ~~L~L~~N~l 253 (477)
+.|++..+..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 5666655443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00018 Score=64.57 Aligned_cols=58 Identities=31% Similarity=0.444 Sum_probs=25.2
Q ss_pred CCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccC
Q 011820 170 KLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSL 229 (477)
Q Consensus 170 ~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l 229 (477)
+...+||++|.+. .+ ..|..++.|.+|.|.+|+|+..-|.--.-+++|+.|.|.+|++
T Consensus 43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3444555555543 11 1234444455555555555433333223334444444444444
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00025 Score=63.76 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=16.7
Q ss_pred CCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCC
Q 011820 263 YLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPI 301 (477)
Q Consensus 263 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 301 (477)
.++.|.+|.+++|+++..-|.--.-+++|+.|.|.+|.+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 344444444444444433332222334444444444444
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00034 Score=65.30 Aligned_cols=68 Identities=29% Similarity=0.407 Sum_probs=28.9
Q ss_pred chhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecc--cCCCCCcccccCCccccEeeeecccCC
Q 011820 161 IPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGN--WLNGRIPDSFGYLSELLILDLSRNSLS 230 (477)
Q Consensus 161 ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~N~l~ 230 (477)
+..-...+..|+.|++.+..++. + ..+-.+++|+.|.++.| ++.+.++.....+++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33333334445555544444431 1 12233445555555555 333333333333344444444444443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00064 Score=63.51 Aligned_cols=68 Identities=28% Similarity=0.283 Sum_probs=36.2
Q ss_pred cchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecc--cCCCCccccccCCcCCcEEecccCcCC
Q 011820 185 LPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRN--SLSGPLPLSLGGLTSLLKFDLSNNQLE 254 (477)
Q Consensus 185 ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~ 254 (477)
+......+..|+.|++.+..++.. ..+-.+++|+.|.++.| +.++.++.....+++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 333333445566666555555422 23445566666666666 444444444445566666666666654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.82 E-value=0.0028 Score=53.49 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=19.4
Q ss_pred hcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeee
Q 011820 165 LGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDL 224 (477)
Q Consensus 165 l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 224 (477)
|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +...-...|.++++|+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 34444555555542 233222223444445555555443 33222233444444444444
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.77 E-value=0.00018 Score=71.23 Aligned_cols=85 Identities=22% Similarity=0.168 Sum_probs=36.9
Q ss_pred CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhh-cCCCCCcEEEcccC-CCCCccchh-cC
Q 011820 114 HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSL-GHLMKLRSLVLLEN-GLSGELPTN-LG 190 (477)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l-~~l~~L~~L~Ls~n-~l~~~ip~~-l~ 190 (477)
.|+.|.++++.-.+ .-+...+...++++++|++.++..++..--..+ ..+++|++|+|..+ .++...-.. ..
T Consensus 139 ~lk~LSlrG~r~v~-----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVG-----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCC-----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 45555555554332 112222334455555555555544443322222 23555555555552 233222121 12
Q ss_pred CCCCCcEEEeecc
Q 011820 191 RLSNLKKLVVSGN 203 (477)
Q Consensus 191 ~l~~L~~L~L~~n 203 (477)
.+++|++|+++.+
T Consensus 214 gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 214 GCRKLKYLNLSWC 226 (483)
T ss_pred hhhhHHHhhhccC
Confidence 3555555555554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.74 E-value=0.0034 Score=52.98 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+++|+.+.+... +...-...|.++++|+.+.+..+ +...-...+.++++|+.+.+.+ .+.......|..+++|+.+
T Consensus 11 ~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 356666666532 33222334555656666666553 4422223455555666666644 2222222344455556555
Q ss_pred eeecccCCCCccccccCCcCCcEEecc
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLS 249 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~ 249 (477)
++..+ +...-...+.++ +|+.+.+.
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55433 222222333343 45554444
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.52 E-value=0.00038 Score=68.92 Aligned_cols=259 Identities=20% Similarity=0.178 Sum_probs=157.0
Q ss_pred hccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhh-cCCCCCcEEEcccCC-CCCc-
Q 011820 108 QLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSL-GHLMKLRSLVLLENG-LSGE- 184 (477)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l-~~l~~L~~L~Ls~n~-l~~~- 184 (477)
...+++++++|++.+|.... ......+...+++|++|++..|..++...-..+ ..+++|++|+++.+. +++.
T Consensus 159 ~~~~CpnIehL~l~gc~~iT-----d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKIT-----DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred HhhhCCchhhhhhhcceecc-----HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 44578999999998886322 222222455689999999999877776655533 568999999999874 3331
Q ss_pred cchhcCCCCCCcEEEeecccCCCCCcccc----cCCccccEeeeeccc-CCCCc-cccccCCcCCcEEecccCcCCCC-C
Q 011820 185 LPTNLGRLSNLKKLVVSGNWLNGRIPDSF----GYLSELLILDLSRNS-LSGPL-PLSLGGLTSLLKFDLSNNQLEGK-I 257 (477)
Q Consensus 185 ip~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~L~~L~L~~N~l~~~-~ 257 (477)
+-.-..++..++.+.+.++.=. -.+.+ .....+..+++..+. ++..- -..-..+..|+.|+.+++...+. .
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~ 311 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV 311 (483)
T ss_pred chHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH
Confidence 1122345666777777764311 11222 233445566655543 33221 11123467888888887654322 2
Q ss_pred chhh-cCCCCCCEeeccCCc-CCccchHHh-hcCCCCCEEEcccCCCC--CcCChhhhcCCCCccEEEccCCCCC-CCc-
Q 011820 258 PKEI-GYLKNITLLDLRNNK-FSGELTKSL-QEMYSLEEMVFSNNPIG--GDLKSLEWKNLQNLVILDLSNTGLA-GEV- 330 (477)
Q Consensus 258 p~~l-~~l~~L~~L~Ls~N~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~--g~i~~~~~~~l~~L~~L~Ls~n~l~-~~i- 330 (477)
-..+ .+..+|+.|-++.++ |+..-...+ .+++.|+.+++..+... +++.. .-.+++.|++|.++++.+. .+-
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-LSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-hccCCchhccCChhhhhhhhhhhh
Confidence 2233 367889999888875 332111122 45778888888877653 12222 2246788999999988753 221
Q ss_pred ---hhhhcCCCCCCEEecccccCCC-CChhhcCCCCCCCEEEeeCCcC
Q 011820 331 ---PEFMAELKRLRFLGLSNNKLTG-TISPKLATMPCVSALYLNGNNL 374 (477)
Q Consensus 331 ---p~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l 374 (477)
...-..+..|+.+.|+++.... ..-+.+..+++|+.+++-+++-
T Consensus 391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 391 RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 1112446788899999987653 3334566778888888887754
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.00084 Score=70.16 Aligned_cols=61 Identities=28% Similarity=0.201 Sum_probs=25.5
Q ss_pred CCCCcEEEeeccc-CCCCCccccc-CCccccEeeeeccc-CCCC-ccccccCCcCCcEEecccCc
Q 011820 192 LSNLKKLVVSGNW-LNGRIPDSFG-YLSELLILDLSRNS-LSGP-LPLSLGGLTSLLKFDLSNNQ 252 (477)
Q Consensus 192 l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~L~~L~L~~N~ 252 (477)
+++|+.|+++++. ++...-..+. .+++|++|.+.++. ++.. +-.....++.|++|+++.+.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555555544 3322111221 14455555544444 2221 11122334555555555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.00051 Score=64.68 Aligned_cols=100 Identities=23% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCc-cccccCCcCCcEE
Q 011820 168 LMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPL-PLSLGGLTSLLKF 246 (477)
Q Consensus 168 l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L 246 (477)
+.+.+.|+.-++.+++. .-..+++.|++|.|+-|.++..- .+..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44566677777776632 12345677777777777776442 3556677777777777665321 1234566666666
Q ss_pred ecccCcCCCCCch-----hhcCCCCCCEee
Q 011820 247 DLSNNQLEGKIPK-----EIGYLKNITLLD 271 (477)
Q Consensus 247 ~L~~N~l~~~~p~-----~l~~l~~L~~L~ 271 (477)
.|..|.-.|.-+. .+.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666665544332 233455555543
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.03 E-value=0.0013 Score=68.70 Aligned_cols=130 Identities=22% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCCCCcEEEcccCCCCCc--cchhcCCCCCCcEEEeecc-cCCCCCc----ccccCCccccEeeeeccc-CCCCcccccc
Q 011820 167 HLMKLRSLVLLENGLSGE--LPTNLGRLSNLKKLVVSGN-WLNGRIP----DSFGYLSELLILDLSRNS-LSGPLPLSLG 238 (477)
Q Consensus 167 ~l~~L~~L~Ls~n~l~~~--ip~~l~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~L~~N~-l~~~~p~~l~ 238 (477)
.++.|+.|.+..+.-... +-.....+++|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356777777766533222 2234456677777777762 1111111 223445777788887776 4433323333
Q ss_pred -CCcCCcEEecccCc-CCCCC-chhhcCCCCCCEeeccCCcCCc--cchHHhhcCCCCCEEEc
Q 011820 239 -GLTSLLKFDLSNNQ-LEGKI-PKEIGYLKNITLLDLRNNKFSG--ELTKSLQEMYSLEEMVF 296 (477)
Q Consensus 239 -~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L 296 (477)
.+++|++|.+..+. ++..- -.....++.|++|+++.+.... .+.....++++|+.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 26778888766665 44322 2223356778888888765431 13333445565555443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.0006 Score=64.21 Aligned_cols=101 Identities=22% Similarity=0.188 Sum_probs=65.7
Q ss_pred CccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccc-hHHhhcCCCCCEE
Q 011820 216 LSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGEL-TKSLQEMYSLEEM 294 (477)
Q Consensus 216 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 294 (477)
+.+.+.|++.++.++.+ .....|+.|++|.|+-|+++.. +.+..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45666777777777632 2345677888888888887633 33667788888888888776321 2356677778888
Q ss_pred EcccCCCCCcCCh----hhhcCCCCccEEE
Q 011820 295 VFSNNPIGGDLKS----LEWKNLQNLVILD 320 (477)
Q Consensus 295 ~Ls~N~l~g~i~~----~~~~~l~~L~~L~ 320 (477)
.|..|.-.|.-+. ..+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8887776654432 1344566666665
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.53 E-value=0.00022 Score=74.21 Aligned_cols=206 Identities=27% Similarity=0.266 Sum_probs=119.5
Q ss_pred CCCcEEEcccCCCCCccc----hhcCCCCCCcEEEeecccCCCCCc----ccccCC-ccccEeeeecccCCCC----ccc
Q 011820 169 MKLRSLVLLENGLSGELP----TNLGRLSNLKKLVVSGNWLNGRIP----DSFGYL-SELLILDLSRNSLSGP----LPL 235 (477)
Q Consensus 169 ~~L~~L~Ls~n~l~~~ip----~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~L~L~~N~l~~~----~p~ 235 (477)
..+..|.|.+|.+..... ..+..++.|+.|++++|.+.+.-- ..+... ..|++|++..|.++.. +.+
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 347889999998875433 345667889999999998873321 122222 4567777777777643 445
Q ss_pred cccCCcCCcEEecccCcCCC----CCchhhc----CCCCCCEeeccCCcCCcc----chHHhhcCCC-CCEEEcccCCCC
Q 011820 236 SLGGLTSLLKFDLSNNQLEG----KIPKEIG----YLKNITLLDLRNNKFSGE----LTKSLQEMYS-LEEMVFSNNPIG 302 (477)
Q Consensus 236 ~l~~l~~L~~L~L~~N~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~-L~~L~Ls~N~l~ 302 (477)
.+.....++.++++.|.+.. .++..+. ...++++|.+.++.++.. +...+...+. +..+++.+|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 56667778888888887631 1222333 356777777777776621 2233444444 556777777765
Q ss_pred CcCChh---hhcCC-CCccEEEccCCCCCCCc----hhhhcCCCCCCEEecccccCCCCCh----hhcCCCCCCCEEEee
Q 011820 303 GDLKSL---EWKNL-QNLVILDLSNTGLAGEV----PEFMAELKRLRFLGLSNNKLTGTIS----PKLATMPCVSALYLN 370 (477)
Q Consensus 303 g~i~~~---~~~~l-~~L~~L~Ls~n~l~~~i----p~~l~~l~~L~~L~Ls~N~l~g~ip----~~l~~l~~L~~L~Ls 370 (477)
+..... .+... ..+++++++.|.++..- ...+..++.++.+.+++|.+...-- ..+.....+.++-+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~ 326 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLG 326 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcc
Confidence 321110 12223 45677777777776433 3344556677777777777664321 122333444455555
Q ss_pred CCcC
Q 011820 371 GNNL 374 (477)
Q Consensus 371 ~N~l 374 (477)
++..
T Consensus 327 ~~~~ 330 (478)
T KOG4308|consen 327 GTGK 330 (478)
T ss_pred ccCc
Confidence 4443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.48 E-value=0.00023 Score=74.06 Aligned_cols=204 Identities=25% Similarity=0.182 Sum_probs=136.5
Q ss_pred ccEEEccCCCCCCCCch----hhhcCCCCCcEEEcccCCCCCccch----hcCCC-CCCcEEEeecccCCCC----Cccc
Q 011820 146 LESLEFRSNPGLTGPIP----TSLGHLMKLRSLVLLENGLSGELPT----NLGRL-SNLKKLVVSGNWLNGR----IPDS 212 (477)
Q Consensus 146 L~~L~Ls~n~~l~g~ip----~~l~~l~~L~~L~Ls~n~l~~~ip~----~l~~l-~~L~~L~L~~n~l~~~----~p~~ 212 (477)
+..|.|.+| .+..... ..+.....|+.|+++.|.+.+.--. .+... ..|++|++..|.++.. +...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 788899988 4654433 3356788999999999999853222 22222 5678888888888743 4556
Q ss_pred ccCCccccEeeeecccCCC----Ccccccc----CCcCCcEEecccCcCCCCC----chhhcCCCC-CCEeeccCCcCCc
Q 011820 213 FGYLSELLILDLSRNSLSG----PLPLSLG----GLTSLLKFDLSNNQLEGKI----PKEIGYLKN-ITLLDLRNNKFSG 279 (477)
Q Consensus 213 l~~l~~L~~L~L~~N~l~~----~~p~~l~----~l~~L~~L~L~~N~l~~~~----p~~l~~l~~-L~~L~Ls~N~l~~ 279 (477)
+.....++.++++.|.+.. .++..+. ...++++|++.++.++... ...+...+. +..|++..|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6678889999999998741 2333443 4778999999999887321 223445555 7779999998874
Q ss_pred c----chHHhhcC-CCCCEEEcccCCCCCcCCh---hhhcCCCCccEEEccCCCCCCCch----hhhcCCCCCCEEeccc
Q 011820 280 E----LTKSLQEM-YSLEEMVFSNNPIGGDLKS---LEWKNLQNLVILDLSNTGLAGEVP----EFMAELKRLRFLGLSN 347 (477)
Q Consensus 280 ~----~p~~l~~l-~~L~~L~Ls~N~l~g~i~~---~~~~~l~~L~~L~Ls~n~l~~~ip----~~l~~l~~L~~L~Ls~ 347 (477)
. ..+.+..+ ..++.++++.|.++..-.. .....++.++++.+++|.+...-- ........+..+-+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 3 33445555 6789999999999743221 134567799999999999875322 2233345555666665
Q ss_pred ccC
Q 011820 348 NKL 350 (477)
Q Consensus 348 N~l 350 (477)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.44 E-value=0.0062 Score=34.47 Aligned_cols=17 Identities=47% Similarity=0.739 Sum_probs=7.5
Q ss_pred CCEEecccccCCCCChhh
Q 011820 340 LRFLGLSNNKLTGTISPK 357 (477)
Q Consensus 340 L~~L~Ls~N~l~g~ip~~ 357 (477)
|++|||++|+++ .+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 344444444444 44443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.04 E-value=0.01 Score=33.52 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=8.2
Q ss_pred CcEEEcccCCCCCccchhc
Q 011820 171 LRSLVLLENGLSGELPTNL 189 (477)
Q Consensus 171 L~~L~Ls~n~l~~~ip~~l 189 (477)
|++|++++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 444443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.87 E-value=0.1 Score=27.41 Aligned_cols=11 Identities=73% Similarity=0.942 Sum_probs=3.3
Q ss_pred CCEEecccccC
Q 011820 340 LRFLGLSNNKL 350 (477)
Q Consensus 340 L~~L~Ls~N~l 350 (477)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.01 E-value=0.014 Score=53.94 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=36.9
Q ss_pred hcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCC
Q 011820 261 IGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRL 340 (477)
Q Consensus 261 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L 340 (477)
+......+.||++.|++. ..-..++-++.|..|+++.|.+. ..|. .++....+..+++..|..+ ..|.+++..+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 334444555555555443 11222333334444455444443 2332 3333344444444444443 344444444444
Q ss_pred CEEecccccC
Q 011820 341 RFLGLSNNKL 350 (477)
Q Consensus 341 ~~L~Ls~N~l 350 (477)
+++++..|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 4444444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.24 E-value=0.018 Score=53.18 Aligned_cols=82 Identities=22% Similarity=0.186 Sum_probs=35.0
Q ss_pred CCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEe
Q 011820 168 LMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFD 247 (477)
Q Consensus 168 l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 247 (477)
....+.||++.|++. ..-..+.-++.|..|+++.|++. ..|..+.++..+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 333444444444433 22222333344444444444443 34444444444444444444443 3444444444444444
Q ss_pred cccCc
Q 011820 248 LSNNQ 252 (477)
Q Consensus 248 L~~N~ 252 (477)
+..|.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 44443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.06 E-value=0.15 Score=46.21 Aligned_cols=67 Identities=33% Similarity=0.394 Sum_probs=45.2
Q ss_pred hhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEccc
Q 011820 107 EQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLE 178 (477)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~ 178 (477)
..+.+++.++.|.+.+|.--++ --.+.+....++|+.|++++|+.++..--..+..+++|+.|.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD-----~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDD-----WCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccchhh-----HHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 4566778888888877753221 111112234688999999998888876666777888888888764
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.55 E-value=0.59 Score=27.28 Aligned_cols=14 Identities=57% Similarity=0.700 Sum_probs=8.2
Q ss_pred CCCCEEecccccCC
Q 011820 338 KRLRFLGLSNNKLT 351 (477)
Q Consensus 338 ~~L~~L~Ls~N~l~ 351 (477)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666655
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.55 E-value=0.59 Score=27.28 Aligned_cols=14 Identities=57% Similarity=0.700 Sum_probs=8.2
Q ss_pred CCCCEEecccccCC
Q 011820 338 KRLRFLGLSNNKLT 351 (477)
Q Consensus 338 ~~L~~L~Ls~N~l~ 351 (477)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666655
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.70 E-value=0.23 Score=45.10 Aligned_cols=82 Identities=22% Similarity=0.184 Sum_probs=41.5
Q ss_pred CCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhh-cCCCCccEEEccCCC-CCCCchhhhcCCCCCCEE
Q 011820 266 NITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEW-KNLQNLVILDLSNTG-LAGEVPEFMAELKRLRFL 343 (477)
Q Consensus 266 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~-~~l~~L~~L~Ls~n~-l~~~ip~~l~~l~~L~~L 343 (477)
.++.+|-++..+...--+.+.+++.++.|.+.++.--++.--..+ ...++|+.|+|++|. ||..--.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345556666555555555555666666666655543211100000 123566666666553 454444555556666666
Q ss_pred eccc
Q 011820 344 GLSN 347 (477)
Q Consensus 344 ~Ls~ 347 (477)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.60 E-value=0.87 Score=26.54 Aligned_cols=13 Identities=54% Similarity=0.580 Sum_probs=6.2
Q ss_pred CCcEEEcccCCCC
Q 011820 170 KLRSLVLLENGLS 182 (477)
Q Consensus 170 ~L~~L~Ls~n~l~ 182 (477)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.60 E-value=0.87 Score=26.54 Aligned_cols=13 Identities=54% Similarity=0.580 Sum_probs=6.2
Q ss_pred CCcEEEcccCCCC
Q 011820 170 KLRSLVLLENGLS 182 (477)
Q Consensus 170 ~L~~L~Ls~n~l~ 182 (477)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.35 E-value=0.14 Score=29.43 Aligned_cols=13 Identities=54% Similarity=0.698 Sum_probs=4.6
Q ss_pred CCCEEecccccCC
Q 011820 339 RLRFLGLSNNKLT 351 (477)
Q Consensus 339 ~L~~L~Ls~N~l~ 351 (477)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.94 E-value=17 Score=37.43 Aligned_cols=59 Identities=31% Similarity=0.265 Sum_probs=27.6
Q ss_pred CcEEEcccCCCCCccchhcCCC---CCCcEEEeecccCC---CCCcccccCCccccEeeeecccC
Q 011820 171 LRSLVLLENGLSGELPTNLGRL---SNLKKLVVSGNWLN---GRIPDSFGYLSELLILDLSRNSL 229 (477)
Q Consensus 171 L~~L~Ls~n~l~~~ip~~l~~l---~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~N~l 229 (477)
+.+++|+.|.....+|..+..+ ..++.++.+...+. +.-+-..+.-++|+..+++.|..
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 5566666666655555443221 23455555544332 11112223344555666655544
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.69 E-value=3.6 Score=24.26 Aligned_cols=13 Identities=54% Similarity=0.682 Sum_probs=7.4
Q ss_pred CCCEEecccccCC
Q 011820 339 RLRFLGLSNNKLT 351 (477)
Q Consensus 339 ~L~~L~Ls~N~l~ 351 (477)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.54 E-value=5.1 Score=23.62 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=8.1
Q ss_pred CCCCEEecccccCC
Q 011820 338 KRLRFLGLSNNKLT 351 (477)
Q Consensus 338 ~~L~~L~Ls~N~l~ 351 (477)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666654
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.21 E-value=6.7 Score=23.36 Aligned_cols=14 Identities=64% Similarity=0.667 Sum_probs=8.2
Q ss_pred CCCCEEecccccCC
Q 011820 338 KRLRFLGLSNNKLT 351 (477)
Q Consensus 338 ~~L~~L~Ls~N~l~ 351 (477)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.87 E-value=8.3 Score=40.44 Aligned_cols=11 Identities=36% Similarity=0.244 Sum_probs=5.2
Q ss_pred ccEEEccCCCC
Q 011820 316 LVILDLSNTGL 326 (477)
Q Consensus 316 L~~L~Ls~n~l 326 (477)
|++|-+.+|.+
T Consensus 272 Leel~l~GNPl 282 (585)
T KOG3763|consen 272 LEELVLEGNPL 282 (585)
T ss_pred HHHeeecCCcc
Confidence 44444444444
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=52.83 E-value=16 Score=45.73 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred ecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 344 GLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 344 ~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
||++|+|+..-+..|..+++|+.|+|++|+|.|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 68889988555566778889999999999999888753
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=50.58 E-value=11 Score=21.88 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=9.0
Q ss_pred CCccEEEccCCCCCC
Q 011820 144 GSLESLEFRSNPGLT 158 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~ 158 (477)
++|++|+|++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666665454
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.79 E-value=12 Score=39.37 Aligned_cols=64 Identities=25% Similarity=0.214 Sum_probs=36.2
Q ss_pred cCCCCCEEEcccCCCCCcCChh--hhcCCCCccEEEccCC--CCCCCchhhhc--CCCCCCEEecccccCCCC
Q 011820 287 EMYSLEEMVFSNNPIGGDLKSL--EWKNLQNLVILDLSNT--GLAGEVPEFMA--ELKRLRFLGLSNNKLTGT 353 (477)
Q Consensus 287 ~l~~L~~L~Ls~N~l~g~i~~~--~~~~l~~L~~L~Ls~n--~l~~~ip~~l~--~l~~L~~L~Ls~N~l~g~ 353 (477)
+.+.+..++|++|++. .+... .-...|+|+.|+|++| .+.. -.++. +...|+.|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 4556777778888775 22210 1233577888888887 3321 12222 234567777777777643
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=34.77 E-value=56 Score=33.91 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=20.1
Q ss_pred CCCCEEecccccCCCCChhh--cCCCCCCCEEEeeC
Q 011820 338 KRLRFLGLSNNKLTGTISPK--LATMPCVSALYLNG 371 (477)
Q Consensus 338 ~~L~~L~Ls~N~l~g~ip~~--l~~l~~L~~L~Ls~ 371 (477)
..+++|+.+.|.+.|+.-.. +..-+..+.+++..
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccc
Confidence 34777788887777654433 23335566666553
No 95
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.23 E-value=26 Score=27.92 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=5.7
Q ss_pred chhHHHHHHHHH
Q 011820 5 MAIKLFIFVPLI 16 (477)
Q Consensus 5 m~~~~~~~~~~~ 16 (477)
|+.|.|+++.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 454555554433
Done!