Query 011820
Match_columns 477
No_of_seqs 702 out of 4851
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 15:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.9E-43 1.7E-47 345.7 22.3 296 34-403 2-307 (313)
2 3rgz_A Protein brassinosteroid 100.0 4.4E-43 1.5E-47 386.5 21.8 340 36-397 10-378 (768)
3 4eco_A Uncharacterized protein 100.0 4.4E-42 1.5E-46 370.7 18.4 326 36-382 28-476 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1.3E-40 4.3E-45 367.4 25.5 250 35-302 266-632 (876)
5 3rgz_A Protein brassinosteroid 100.0 1.6E-40 5.6E-45 366.0 24.1 265 143-422 417-751 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 3.6E-36 1.2E-40 311.2 22.5 326 62-404 5-412 (455)
7 4fcg_A Uncharacterized protein 100.0 9.5E-35 3.3E-39 288.3 16.9 284 35-375 24-314 (328)
8 1ogq_A PGIP-2, polygalacturona 100.0 3E-35 1E-39 290.0 11.5 231 144-379 76-308 (313)
9 2id5_A Lingo-1, leucine rich r 100.0 3E-33 1E-37 291.3 23.3 287 106-403 49-359 (477)
10 3v47_A TOLL-like receptor 5B a 100.0 1.8E-33 6.1E-38 290.9 19.7 273 103-384 68-417 (455)
11 4eco_A Uncharacterized protein 100.0 1.8E-33 6.1E-38 303.4 19.1 326 105-456 239-599 (636)
12 3t6q_A CD180 antigen; protein- 100.0 8.8E-33 3E-37 296.1 23.4 304 83-404 255-564 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-32 6.5E-37 293.5 23.9 144 260-404 419-562 (606)
14 2id5_A Lingo-1, leucine rich r 100.0 2.1E-32 7E-37 285.0 23.5 268 103-381 70-362 (477)
15 2z7x_B TOLL-like receptor 1, v 100.0 5E-32 1.7E-36 285.1 25.2 282 104-403 60-484 (520)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-31 4.3E-36 284.9 26.1 161 238-403 350-513 (562)
17 2z7x_B TOLL-like receptor 1, v 100.0 6.1E-31 2.1E-35 276.8 27.3 329 104-462 36-486 (520)
18 3oja_B Anopheles plasmodium-re 100.0 1.1E-31 3.6E-36 287.6 21.8 260 103-378 64-361 (597)
19 2z81_A CD282 antigen, TOLL-lik 100.0 7.2E-31 2.5E-35 277.8 27.0 171 64-253 3-184 (549)
20 3o6n_A APL1; leucine-rich repe 100.0 3.2E-31 1.1E-35 268.9 22.0 278 103-403 58-355 (390)
21 2z80_A TOLL-like receptor 2, v 100.0 1.7E-31 5.9E-36 267.3 19.6 266 104-380 45-319 (353)
22 3t6q_A CD180 antigen; protein- 100.0 1.1E-30 3.6E-35 280.0 26.9 144 237-381 274-419 (606)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-30 5.5E-35 276.4 26.6 343 83-462 53-515 (562)
24 1ziw_A TOLL-like receptor 3; i 100.0 5E-30 1.7E-34 278.5 30.3 254 144-398 97-441 (680)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-30 5.5E-35 279.0 23.2 306 83-404 53-584 (635)
26 3o6n_A APL1; leucine-rich repe 100.0 1.5E-30 5.1E-35 264.0 21.5 274 106-403 86-377 (390)
27 1xku_A Decorin; proteoglycan, 100.0 6.7E-30 2.3E-34 253.3 25.3 247 113-375 52-306 (330)
28 4ecn_A Leucine-rich repeat pro 100.0 1.1E-30 3.8E-35 288.2 21.7 332 104-458 480-841 (876)
29 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-30 8.1E-35 287.8 23.8 278 83-375 25-375 (844)
30 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-30 1.3E-34 279.4 23.5 261 143-405 328-627 (680)
31 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-30 1.8E-34 274.6 23.7 138 83-235 33-171 (606)
32 2z66_A Variable lymphocyte rec 100.0 1.2E-30 4.2E-35 255.8 16.8 234 144-380 28-266 (306)
33 2z63_A TOLL-like receptor 4, v 100.0 7E-30 2.4E-34 271.2 23.4 335 106-461 45-535 (570)
34 3oja_B Anopheles plasmodium-re 100.0 5.6E-30 1.9E-34 274.2 22.0 276 111-403 49-361 (597)
35 2z66_A Variable lymphocyte rec 100.0 5.6E-31 1.9E-35 258.2 12.9 256 113-381 28-293 (306)
36 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-29 4.4E-34 251.5 22.7 253 104-375 47-307 (332)
37 1xku_A Decorin; proteoglycan, 100.0 1.6E-29 5.6E-34 250.5 23.3 268 114-401 32-307 (330)
38 2ft3_A Biglycan; proteoglycan, 100.0 1E-29 3.5E-34 252.2 20.8 267 114-401 34-308 (332)
39 4fcg_A Uncharacterized protein 100.0 1.7E-29 5.8E-34 250.5 21.7 233 83-351 82-314 (328)
40 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-29 8.7E-34 279.5 24.0 283 104-398 18-349 (844)
41 2z81_A CD282 antigen, TOLL-lik 100.0 1E-29 3.5E-34 269.0 19.4 165 103-277 18-184 (549)
42 1wwl_A Monocyte differentiatio 100.0 5.9E-31 2E-35 259.1 8.5 250 109-376 39-310 (312)
43 3zyj_A Leucine-rich repeat-con 100.0 5.5E-29 1.9E-33 256.7 23.4 233 144-380 64-297 (440)
44 3zyi_A Leucine-rich repeat-con 100.0 4E-29 1.4E-33 258.6 21.8 233 144-380 75-308 (452)
45 2z80_A TOLL-like receptor 2, v 100.0 1.1E-29 3.8E-34 254.1 16.5 280 112-404 30-318 (353)
46 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-28 4.4E-33 238.9 20.8 230 116-381 14-244 (285)
47 1ozn_A Reticulon 4 receptor; N 100.0 7.8E-29 2.7E-33 240.5 18.3 242 104-381 25-267 (285)
48 4g8a_A TOLL-like receptor 4; l 100.0 4.5E-28 1.5E-32 259.9 25.1 268 104-380 90-585 (635)
49 4fmz_A Internalin; leucine ric 100.0 2E-27 6.8E-32 236.8 28.0 245 109-379 84-328 (347)
50 3bz5_A Internalin-J, INLJ; leu 100.0 9.1E-28 3.1E-32 248.7 26.2 256 83-381 43-305 (457)
51 2z63_A TOLL-like receptor 4, v 100.0 5.5E-29 1.9E-33 264.3 17.0 264 103-383 272-539 (570)
52 3zyi_A Leucine-rich repeat-con 100.0 2.7E-28 9.3E-33 252.3 20.8 251 146-404 56-307 (452)
53 3zyj_A Leucine-rich repeat-con 100.0 3.2E-28 1.1E-32 250.9 20.5 250 147-404 46-296 (440)
54 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-27 1.2E-31 244.2 25.5 257 105-398 34-297 (457)
55 1o6v_A Internalin A; bacterial 100.0 1.9E-26 6.4E-31 239.5 30.7 241 109-379 86-326 (466)
56 4fmz_A Internalin; leucine ric 100.0 4.9E-27 1.7E-31 234.0 25.1 243 107-375 104-346 (347)
57 1o6v_A Internalin A; bacterial 100.0 5.9E-27 2E-31 243.3 26.7 282 109-421 108-409 (466)
58 1wwl_A Monocyte differentiatio 99.9 8.1E-29 2.8E-33 243.8 7.2 245 143-399 42-308 (312)
59 2z62_A TOLL-like receptor 4, v 99.9 8.3E-27 2.9E-31 225.1 18.4 217 144-384 28-246 (276)
60 3oja_A Leucine-rich immune mol 99.9 9.5E-28 3.2E-32 250.6 11.9 220 144-379 34-255 (487)
61 3o53_A Protein LRIM1, AGAP0063 99.9 8.7E-28 3E-32 236.9 10.4 217 143-375 33-250 (317)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-28 9.3E-33 240.6 6.6 249 108-379 29-280 (317)
63 3oja_A Leucine-rich immune mol 99.9 1.6E-27 5.6E-32 248.8 10.1 244 104-370 21-270 (487)
64 1jl5_A Outer protein YOPM; leu 99.9 1E-25 3.4E-30 233.1 20.5 231 105-381 146-378 (454)
65 2z62_A TOLL-like receptor 4, v 99.9 1.2E-25 4E-30 217.0 19.6 220 103-354 20-240 (276)
66 2o6q_A Variable lymphocyte rec 99.9 3.9E-25 1.3E-29 212.9 21.9 209 144-381 16-224 (270)
67 2o6q_A Variable lymphocyte rec 99.9 4.1E-25 1.4E-29 212.7 21.0 201 116-352 19-219 (270)
68 1jl5_A Outer protein YOPM; leu 99.9 8.2E-25 2.8E-29 226.3 23.0 244 112-399 110-369 (454)
69 1p9a_G Platelet glycoprotein I 99.9 3.9E-25 1.3E-29 215.3 17.6 207 165-379 6-212 (290)
70 3rfs_A Internalin B, repeat mo 99.9 2.9E-25 1E-29 214.0 15.1 205 166-382 38-242 (272)
71 3rfs_A Internalin B, repeat mo 99.9 6.7E-25 2.3E-29 211.5 16.3 207 143-362 40-246 (272)
72 1z7x_W Ribonuclease inhibitor; 99.9 5.5E-27 1.9E-31 242.5 1.6 284 84-377 87-413 (461)
73 2ca6_A RAN GTPase-activating p 99.9 3.9E-26 1.3E-30 231.2 4.4 251 103-379 22-320 (386)
74 3g06_A SSPH2 (leucine-rich rep 99.9 8.4E-24 2.9E-28 226.0 22.5 233 104-381 54-303 (622)
75 2ca6_A RAN GTPase-activating p 99.9 6.4E-26 2.2E-30 229.6 5.6 244 83-355 33-320 (386)
76 4glp_A Monocyte differentiatio 99.9 9.4E-25 3.2E-29 214.5 13.8 226 144-376 64-308 (310)
77 3goz_A Leucine-rich repeat-con 99.9 2.8E-25 9.6E-30 223.1 8.1 253 118-379 3-301 (362)
78 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.9E-28 204.9 19.0 204 109-352 6-209 (290)
79 1z7x_W Ribonuclease inhibitor; 99.9 3.6E-26 1.2E-30 236.4 1.2 266 104-377 47-356 (461)
80 2ast_B S-phase kinase-associat 99.9 7.6E-25 2.6E-29 217.0 8.7 232 144-381 70-312 (336)
81 4glp_A Monocyte differentiatio 99.9 2.5E-24 8.5E-29 211.5 12.1 228 112-352 63-308 (310)
82 2xwt_C Thyrotropin receptor; s 99.9 8.2E-24 2.8E-28 199.7 14.3 197 144-372 31-236 (239)
83 3m19_A Variable lymphocyte rec 99.9 3E-23 1E-27 197.4 16.7 158 144-302 35-192 (251)
84 1h6u_A Internalin H; cell adhe 99.9 5.7E-23 1.9E-27 201.7 18.6 193 167-376 39-231 (308)
85 1h6u_A Internalin H; cell adhe 99.9 1.4E-22 4.9E-27 198.8 19.1 192 143-352 40-231 (308)
86 3m19_A Variable lymphocyte rec 99.9 1.1E-22 3.6E-27 193.6 17.3 180 196-379 17-196 (251)
87 3g06_A SSPH2 (leucine-rich rep 99.9 7.6E-22 2.6E-26 210.9 24.9 240 114-400 41-297 (622)
88 2xwt_C Thyrotropin receptor; s 99.9 8.3E-23 2.8E-27 192.8 14.9 204 104-324 25-236 (239)
89 3goz_A Leucine-rich repeat-con 99.9 5.7E-24 1.9E-28 213.5 7.0 249 102-358 11-304 (362)
90 2ast_B S-phase kinase-associat 99.9 5.3E-24 1.8E-28 210.9 6.4 268 63-360 35-315 (336)
91 4ay9_X Follicle-stimulating ho 99.9 1.9E-21 6.6E-26 194.2 18.1 221 145-371 31-255 (350)
92 2o6s_A Variable lymphocyte rec 99.9 1.5E-21 5.2E-26 180.1 14.3 159 170-336 29-187 (208)
93 3cvr_A Invasion plasmid antige 99.9 9.9E-22 3.4E-26 207.7 14.1 186 145-360 60-252 (571)
94 3cvr_A Invasion plasmid antige 99.9 1.5E-21 5.2E-26 206.2 14.8 186 114-336 60-252 (571)
95 2o6s_A Variable lymphocyte rec 99.9 2.3E-21 8E-26 178.8 13.5 174 172-380 10-183 (208)
96 4ay9_X Follicle-stimulating ho 99.8 1.8E-20 6.1E-25 187.2 17.4 230 104-349 23-257 (350)
97 3ogk_B Coronatine-insensitive 99.8 1E-21 3.6E-26 209.3 4.9 283 109-398 160-524 (592)
98 3ogk_B Coronatine-insensitive 99.8 1.5E-21 5.3E-26 208.0 6.1 219 159-377 283-528 (592)
99 1h6t_A Internalin B; cell adhe 99.8 2E-19 7E-24 174.8 17.8 171 166-375 43-213 (291)
100 1h6t_A Internalin B; cell adhe 99.8 1.9E-19 6.6E-24 175.0 15.9 169 143-327 45-213 (291)
101 2v9t_B SLIT homolog 2 protein 99.8 1.5E-19 5.1E-24 168.5 14.2 157 220-380 14-170 (220)
102 1m9s_A Internalin B; cell inva 99.8 6E-20 2E-24 195.8 12.8 171 143-329 42-212 (605)
103 1m9s_A Internalin B; cell inva 99.8 1.1E-19 3.8E-24 193.8 14.3 190 145-352 22-211 (605)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7E-24 167.5 14.3 158 220-381 14-172 (220)
105 2xot_A Amphoterin-induced prot 99.8 1.5E-19 5E-24 181.3 12.6 183 172-379 21-206 (361)
106 3e6j_A Variable lymphocyte rec 99.8 4.1E-19 1.4E-23 166.5 14.0 155 220-379 22-176 (229)
107 2xot_A Amphoterin-induced prot 99.8 2.2E-19 7.5E-24 180.0 12.6 179 146-329 20-204 (361)
108 4b8c_D Glucose-repressible alc 99.8 1.2E-20 4.1E-25 205.8 3.0 180 161-351 216-404 (727)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-19 2.4E-23 163.9 14.6 135 144-279 32-167 (220)
110 2v9t_B SLIT homolog 2 protein 99.8 9.6E-19 3.3E-23 163.0 13.8 61 145-206 33-93 (220)
111 3e6j_A Variable lymphocyte rec 99.8 2.2E-18 7.4E-23 161.6 15.7 86 144-230 40-125 (229)
112 4ezg_A Putative uncharacterize 99.8 2E-18 6.7E-23 157.9 14.0 132 166-302 41-172 (197)
113 4ezg_A Putative uncharacterize 99.8 2.3E-18 7.9E-23 157.4 13.8 154 190-351 41-194 (197)
114 1dce_A Protein (RAB geranylger 99.8 3.4E-21 1.1E-25 204.2 -6.1 190 166-379 346-550 (567)
115 2p1m_B Transport inhibitor res 99.7 3E-19 1E-23 190.2 4.1 183 191-376 287-495 (594)
116 4b8c_D Glucose-repressible alc 99.7 2.5E-19 8.4E-24 195.5 3.1 226 113-378 173-407 (727)
117 1xeu_A Internalin C; cellular 99.7 1.9E-18 6.3E-23 165.5 8.8 78 146-230 21-98 (263)
118 1xeu_A Internalin C; cellular 99.7 1.6E-18 5.5E-23 166.0 8.3 171 167-377 17-187 (263)
119 1dce_A Protein (RAB geranylger 99.7 4.9E-20 1.7E-24 195.2 -4.7 186 190-400 346-546 (567)
120 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.6E-22 151.7 12.1 155 244-404 11-166 (192)
121 2p1m_B Transport inhibitor res 99.7 1.3E-18 4.6E-23 185.2 1.5 160 216-377 288-471 (594)
122 2ell_A Acidic leucine-rich nuc 99.7 1.5E-16 5.1E-21 141.3 12.2 132 193-351 24-160 (168)
123 2ell_A Acidic leucine-rich nuc 99.7 1.4E-16 4.7E-21 141.5 11.9 132 169-302 24-160 (168)
124 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.8E-21 145.7 11.4 129 172-303 11-140 (192)
125 2je0_A Acidic leucine-rich nuc 99.7 1.2E-16 4.2E-21 138.9 9.0 84 144-230 17-101 (149)
126 2o6r_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 139.6 12.4 134 243-380 9-142 (177)
127 2je0_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 139.2 8.1 129 168-298 16-149 (149)
128 3sb4_A Hypothetical leucine ri 99.6 2.1E-16 7.3E-21 156.1 9.1 200 168-375 100-310 (329)
129 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.6E-20 139.3 12.9 132 244-380 13-144 (193)
130 2o6r_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 132.8 14.0 110 170-279 29-138 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 3.4E-15 1.2E-19 136.0 12.6 83 195-278 33-115 (193)
132 1ds9_A Outer arm dynein; leuci 99.6 4.1E-17 1.4E-21 149.2 -3.5 145 145-295 19-180 (198)
133 3sb4_A Hypothetical leucine ri 99.6 1.6E-15 5.5E-20 149.8 7.1 260 103-382 13-292 (329)
134 1ds9_A Outer arm dynein; leuci 99.6 4.3E-17 1.5E-21 149.0 -5.3 108 166-278 15-128 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.5 9.6E-15 3.3E-19 130.7 8.6 132 238-376 16-154 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-14 4.1E-19 130.1 8.9 129 167-301 17-152 (176)
137 4fdw_A Leucine rich hypothetic 99.5 3.6E-13 1.2E-17 136.6 18.7 216 145-371 158-379 (401)
138 3g39_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 119.2 11.5 105 146-254 11-115 (170)
139 3g39_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 118.8 11.6 87 144-231 30-116 (170)
140 2r9u_A Variable lymphocyte rec 99.4 9.5E-13 3.2E-17 117.6 11.1 104 147-254 15-118 (174)
141 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.6E-17 117.3 11.1 105 116-231 15-119 (174)
142 4fdw_A Leucine rich hypothetic 99.4 8E-12 2.7E-16 126.6 18.1 243 112-375 112-358 (401)
143 3un9_A NLR family member X1; l 99.4 5.4E-14 1.9E-18 141.2 -0.7 187 168-375 71-283 (372)
144 3un9_A NLR family member X1; l 99.3 7.1E-14 2.4E-18 140.3 -0.8 159 143-302 71-252 (372)
145 2ifg_A High affinity nerve gro 99.3 6.6E-12 2.3E-16 124.5 10.5 107 269-379 12-120 (347)
146 2ifg_A High affinity nerve gro 99.2 2.6E-11 8.8E-16 120.2 9.5 105 148-255 12-117 (347)
147 2ra8_A Uncharacterized protein 99.0 1.5E-10 5.3E-15 115.3 6.6 190 169-376 107-321 (362)
148 2ra8_A Uncharacterized protein 99.0 2E-10 6.7E-15 114.5 6.5 205 144-373 107-341 (362)
149 4fs7_A Uncharacterized protein 98.9 1.3E-08 4.5E-13 102.6 15.6 82 285-370 293-374 (394)
150 4fs7_A Uncharacterized protein 98.9 2.5E-08 8.6E-13 100.5 15.1 210 143-367 184-393 (394)
151 4gt6_A Cell surface protein; l 98.8 1.2E-07 4E-12 95.6 18.5 251 108-373 82-368 (394)
152 4gt6_A Cell surface protein; l 98.7 3.6E-07 1.2E-11 92.0 16.7 245 109-374 110-390 (394)
153 1io0_A Tropomodulin; LRR prote 98.6 1.4E-08 4.9E-13 91.2 3.7 116 260-375 31-164 (185)
154 1io0_A Tropomodulin; LRR prote 98.6 1.5E-08 5.2E-13 91.0 2.3 69 162-230 29-106 (185)
155 4h09_A Hypothetical leucine ri 98.4 9.1E-06 3.1E-10 81.0 18.8 104 108-226 64-167 (379)
156 3rw6_A Nuclear RNA export fact 98.4 6.6E-08 2.2E-12 91.7 2.5 39 264-302 169-209 (267)
157 3rw6_A Nuclear RNA export fact 98.4 7E-08 2.4E-12 91.5 2.5 66 287-355 168-237 (267)
158 4h09_A Hypothetical leucine ri 98.2 5.9E-05 2E-09 75.0 17.7 239 114-372 92-343 (379)
159 3e4g_A ATP synthase subunit S, 97.8 1.6E-05 5.4E-10 70.2 5.5 34 266-299 115-149 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.8E-10 71.2 3.6 83 144-227 61-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00012 4E-09 65.8 5.5 113 262-375 38-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00012 4.2E-09 65.6 3.6 63 168-230 40-111 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.001 3.5E-08 55.6 6.5 61 317-379 11-72 (130)
164 3rfe_A Platelet glycoprotein I 95.8 0.012 4E-07 49.0 5.5 33 195-227 33-65 (130)
165 2lz0_A Uncharacterized protein 22.6 1.1E+02 0.0037 23.3 4.6 12 189-200 16-27 (100)
166 2lz0_A Uncharacterized protein 20.0 1.3E+02 0.0045 22.8 4.5 38 211-249 14-51 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.9e-43 Score=345.74 Aligned_cols=296 Identities=27% Similarity=0.441 Sum_probs=214.5
Q ss_pred CCCHHHHHHHHHHHhcCCC----CCCCCCCCCCCCCC--CCCCCCcEeCCCCCceEEEEEecCCCCCCCCccccccccch
Q 011820 34 PMEKAEQEALYTAIKGFVG----NWWNGSNLYPDPCG--WTPIEGVSCDIYDDLWYITALSFGSLHDNSLGCVTNVEFRE 107 (477)
Q Consensus 34 ~~~~~~~~aL~~~~~~~~~----~~W~~~~~~~d~C~--w~~~~Gv~C~~~~~~~~v~~L~l~~~~~~~l~~~~~g~i~~ 107 (477)
.|.++|++||++||+++.+ ++|..+ .|||. |. ||+|+..+..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~---~~~C~~~w~---gv~C~~~~~~-------------------------- 49 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWL---GVLCDTDTQT-------------------------- 49 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCST---TEEECCSSSC--------------------------
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCC---CCCCcCCCc---ceEeCCCCCC--------------------------
Confidence 4788999999999999864 468654 58998 95 9999853211
Q ss_pred hccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCC--CchhhhcCCCCCcEEEccc-CCCCCc
Q 011820 108 QLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTG--PIPTSLGHLMKLRSLVLLE-NGLSGE 184 (477)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g--~ip~~l~~l~~L~~L~Ls~-n~l~~~ 184 (477)
.++++|++++| .+++ .+|..+.++++|++|++++ |.+++.
T Consensus 50 ------------------------------------~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~ 92 (313)
T 1ogq_A 50 ------------------------------------YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92 (313)
T ss_dssp ------------------------------------CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred ------------------------------------ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence 12333334444 3444 4555666666666666663 666666
Q ss_pred cchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCC
Q 011820 185 LPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYL 264 (477)
Q Consensus 185 ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 264 (477)
+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 66666666666666666666666666666666666666666666666666666667777777777777766677777777
Q ss_pred C-CCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEE
Q 011820 265 K-NITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFL 343 (477)
Q Consensus 265 ~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L 343 (477)
+ +|++|++++|++++.+|..+..++ |++|++++|.+++..+. .+..+++|++|++++|++++.+|. +..+++|++|
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L 249 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGL 249 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEE
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEE
Confidence 6 777777777777777777777776 77788877777755553 677788888888888888866665 7788999999
Q ss_pred ecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCC
Q 011820 344 GLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYP 403 (477)
Q Consensus 344 ~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~ 403 (477)
+|++|++++.+|..+..+++|++|+|++|+++|.+|... ....+ +.+++.+||.+||.
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~-~l~~L-~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRF-DVSAYANNKCLCGS 307 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST-TGGGS-CGGGTCSSSEEEST
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc-ccccc-ChHHhcCCCCccCC
Confidence 999999999999999999999999999999999999763 22233 56778899999986
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.4e-43 Score=386.46 Aligned_cols=340 Identities=26% Similarity=0.323 Sum_probs=237.0
Q ss_pred CHHHHHHHHHHHhcCCC----CCCCCCCCCCCCCCCCCCCCcEeCCCCCceEEEEEecCCCCCCC--------------C
Q 011820 36 EKAEQEALYTAIKGFVG----NWWNGSNLYPDPCGWTPIEGVSCDIYDDLWYITALSFGSLHDNS--------------L 97 (477)
Q Consensus 36 ~~~~~~aL~~~~~~~~~----~~W~~~~~~~d~C~w~~~~Gv~C~~~~~~~~v~~L~l~~~~~~~--------------l 97 (477)
.++|++||++||+++.+ ++|+.+ +|||.|. ||+|+ ++ ||++|++....-.. +
T Consensus 10 ~~~~~~all~~k~~~~~~~~l~~W~~~---~~~C~w~---gv~C~--~~--~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFD---GVTCR--DD--KVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTTSSTTCCTT---SCGGGST---TEEEE--TT--EEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred CHHHHHHHHHHHhhCCCcccccCCCCC---CCCcCCc---ceEEC--CC--cEEEEECCCCCcCCccCccChhHhccCcc
Confidence 46899999999998853 579743 5999995 99998 34 89999996421100 0
Q ss_pred ---ccccccc--cchhccCCCCCCEEEcccCCCCCCCCCCccChh-hhhhcCCCccEEEccCCCCCCCCchhhh-cCCCC
Q 011820 98 ---GCVTNVE--FREQLFELKHLKSLSFFNCFTSSQQHPTTIPIS-GWENLAGSLESLEFRSNPGLTGPIPTSL-GHLMK 170 (477)
Q Consensus 98 ---~~~~~g~--i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~-~~~~~~~~L~~L~Ls~n~~l~g~ip~~l-~~l~~ 170 (477)
.....+. +|+.+.++++|++|+|++|.+.+ .+|.. .+.. +++|++|++++| .+++.+|..+ .++++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~l~~-l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG-----PVTTLTSLGS-CSGLKFLNVSSN-TLDFPGKVSGGLKLNS 152 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEE-----EGGGGGGGGG-CTTCCEEECCSS-EEECCSSCCSCCCCTT
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCC-----cCCChHHHhC-CCCCCEEECcCC-ccCCcCCHHHhccCCC
Confidence 0000111 22566667777777777776654 55541 1222 567777777777 5666666655 66777
Q ss_pred CcEEEcccCCCCCccchh---cCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEe
Q 011820 171 LRSLVLLENGLSGELPTN---LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFD 247 (477)
Q Consensus 171 L~~L~Ls~n~l~~~ip~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 247 (477)
|++|++++|.+++..|.. +.++++|++|++++|.+++.+|. ..+++|++|++++|++++.+|. ++++++|++|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence 777777777777666655 66777777777777777665553 5677777777777777776666 77777888888
Q ss_pred cccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCC
Q 011820 248 LSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLA 327 (477)
Q Consensus 248 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~ 327 (477)
+++|.+++.+|..+.++++|++|++++|.+++.+|.. .+++|++|++++|.++|.+|......+++|++|++++|+++
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 8888877777777777788888888877777666654 67777777777777777777533333478888888888888
Q ss_pred CCchhhhcCCCCCCEEecccccCCCCChhh-cCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCC
Q 011820 328 GEVPEFMAELKRLRFLGLSNNKLTGTISPK-LATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNN 397 (477)
Q Consensus 328 ~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N 397 (477)
+.+|..++.+++|++|++++|+++|.+|.. +..+++|++|++++|+++|.+|..........+.+++++|
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC
Confidence 788888888888888888888888777765 7788888888888888888887665433212234444444
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.4e-42 Score=370.66 Aligned_cols=326 Identities=20% Similarity=0.269 Sum_probs=271.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCC----------CCCCCCCCCCCCCCCcEeCCCCCceEEEEEecCCCCCCCCcccccccc
Q 011820 36 EKAEQEALYTAIKGFVGNWWNG----------SNLYPDPCGWTPIEGVSCDIYDDLWYITALSFGSLHDNSLGCVTNVEF 105 (477)
Q Consensus 36 ~~~~~~aL~~~~~~~~~~~W~~----------~~~~~d~C~w~~~~Gv~C~~~~~~~~v~~L~l~~~~~~~l~~~~~g~i 105 (477)
...|++||.++++++.+..|.. +...+|||.|..++||+|+.. + ||++|++.. +. ..|.+
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~--~V~~L~L~~---~~----l~g~l 97 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-G--RVTGLSLEG---FG----ASGRV 97 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-C--CEEEEECTT---SC----CEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-C--CEEEEEecC---cc----cCCcC
Confidence 3479999999999887654431 112368999943449999864 3 899999963 23 34899
Q ss_pred chhccCCCCCCEEEcccCCCC-----------------------------------------------------------
Q 011820 106 REQLFELKHLKSLSFFNCFTS----------------------------------------------------------- 126 (477)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~~~----------------------------------------------------------- 126 (477)
|++++++++|++|+|++|.+.
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 999999999999999998540
Q ss_pred --------------CCCCCCccChhhhhhcCCCccEEEccCCCCCCCC-----------------chhhhc--CCCCCcE
Q 011820 127 --------------SQQHPTTIPISGWENLAGSLESLEFRSNPGLTGP-----------------IPTSLG--HLMKLRS 173 (477)
Q Consensus 127 --------------~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~-----------------ip~~l~--~l~~L~~ 173 (477)
.+.+.+ ||.. +.+ +++|++|+|++| .++|. +|+.++ ++++|++
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~-l~~-l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~ 253 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKA-VMR-LTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGG-GGG-CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccchhhhhhccccCCCcc-CCHH-Hhc-ccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCE
Confidence 012223 6654 333 689999999999 69986 999999 9999999
Q ss_pred EEcccCCCCCccchhcCCCCCCcEEEeeccc-CCC-CCcccccCC------ccccEeeeecccCCCCccc--cccCCcCC
Q 011820 174 LVLLENGLSGELPTNLGRLSNLKKLVVSGNW-LNG-RIPDSFGYL------SELLILDLSRNSLSGPLPL--SLGGLTSL 243 (477)
Q Consensus 174 L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L 243 (477)
|++++|.+.+.+|..++++++|++|++++|+ ++| .+|..++++ ++|++|++++|+++ .+|. .+.++++|
T Consensus 254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L 332 (636)
T 4eco_A 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL 332 (636)
T ss_dssp EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence 9999999999999999999999999999998 998 899888876 99999999999999 8898 89999999
Q ss_pred cEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCC-CCEEEcccCCCCCcCChhhhcCC--CCccEEE
Q 011820 244 LKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYS-LEEMVFSNNPIGGDLKSLEWKNL--QNLVILD 320 (477)
Q Consensus 244 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~i~~~~~~~l--~~L~~L~ 320 (477)
++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+.++++ |++|++++|.++ .+|. .+... ++|++|+
T Consensus 333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAID 408 (636)
T ss_dssp CEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEE
T ss_pred CEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEE
Confidence 999999999999999 8999999999999999998 88888999999 999999999998 7775 44443 3899999
Q ss_pred ccCCCCCCCchhhhc-------CCCCCCEEecccccCCCCChhh-cCCCCCCCEEEeeCCcCeeecCCCh
Q 011820 321 LSNTGLAGEVPEFMA-------ELKRLRFLGLSNNKLTGTISPK-LATMPCVSALYLNGNNLSGELQFSE 382 (477)
Q Consensus 321 Ls~n~l~~~ip~~l~-------~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~~ 382 (477)
+++|++++.+|..+. .+++|++|+|++|+++ .+|.. +..+++|++|+|++|+++ .+|...
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 476 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNS 476 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSS
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHH
Confidence 999999988888887 7788999999999988 55554 456888888888888888 777653
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-40 Score=367.37 Aligned_cols=250 Identities=22% Similarity=0.261 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCC--CCCC--CCC------CCC---CCcEeCCCCCceEEEEEecCCCCCCCCcccc
Q 011820 35 MEKAEQEALYTAIKGFVGNWWNGSNL--YPDP--CGW------TPI---EGVSCDIYDDLWYITALSFGSLHDNSLGCVT 101 (477)
Q Consensus 35 ~~~~~~~aL~~~~~~~~~~~W~~~~~--~~d~--C~w------~~~---~Gv~C~~~~~~~~v~~L~l~~~~~~~l~~~~ 101 (477)
...+|++||++||+++.+.+|+.++. ..+| |.| ..| .||+|+. ++ ||++|++.. +.+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~--~V~~L~Ls~---~~L---- 335 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NG--RVTGLSLAG---FGA---- 335 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TS--CEEEEECTT---TCC----
T ss_pred cchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC-CC--CEEEEECcc---CCC----
Confidence 44679999999999998888976530 1245 999 112 4999986 23 899999963 233
Q ss_pred ccccchhccCCCCCCEEEc-ccCCCCCC----------------------------------------------------
Q 011820 102 NVEFREQLFELKHLKSLSF-FNCFTSSQ---------------------------------------------------- 128 (477)
Q Consensus 102 ~g~i~~~l~~l~~L~~L~L-s~n~~~~~---------------------------------------------------- 128 (477)
.|.+|+.++++++|++|+| ++|.+.+.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 4888999999999999999 66643221
Q ss_pred --------------------CCCCccChhhhhhcCCCccEEEccCCCCCCC-----------------Cchhhhc--CCC
Q 011820 129 --------------------QHPTTIPISGWENLAGSLESLEFRSNPGLTG-----------------PIPTSLG--HLM 169 (477)
Q Consensus 129 --------------------~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g-----------------~ip~~l~--~l~ 169 (477)
.+.+ ||.. +.. +++|++|+|++| .++| .+|+.++ +++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~-IP~~-l~~-L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITF-ISKA-IQR-LTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGG-CTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccchhhceeccccCcccc-hhHH-Hhc-CCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCC
Confidence 0001 5554 333 588888888888 6887 3888877 888
Q ss_pred CCcEEEcccCCCCCccchhcCCCCCCcEEEeeccc-CCC-CCcccccCCc-------cccEeeeecccCCCCccc--ccc
Q 011820 170 KLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNW-LNG-RIPDSFGYLS-------ELLILDLSRNSLSGPLPL--SLG 238 (477)
Q Consensus 170 ~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~N~l~~~~p~--~l~ 238 (477)
+|++|+|++|.+.+.+|..++++++|++|+|++|+ ++| .+|..+++++ +|++|++++|+++ .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 88888888888888888888888888888888887 777 6776665554 7777888777777 6777 777
Q ss_pred CCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCC-CCEEEcccCCCC
Q 011820 239 GLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYS-LEEMVFSNNPIG 302 (477)
Q Consensus 239 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~ 302 (477)
++++|++|++++|.++ .+| .++.+++|+.|++++|.++ .+|..+.++++ |++|++++|.++
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 7777777777777776 666 6666777777777777666 56666666666 666666666554
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-40 Score=365.95 Aligned_cols=265 Identities=34% Similarity=0.527 Sum_probs=232.3
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+++|++|++++| .+++.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|
T Consensus 417 l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 417 CSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp CTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 578888888888 6888888888888888888888888888888888888899999999999988888888889999999
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhh----------------
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQ---------------- 286 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---------------- 286 (477)
++++|++++.+|..++.+++|++|++++|.++|.+|..+.++++|++|++++|.++|.+|..+.
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 9999999888898888899999999999999888998899999999999999988877776543
Q ss_pred ------------------------------------------------------cCCCCCEEEcccCCCCCcCChhhhcC
Q 011820 287 ------------------------------------------------------EMYSLEEMVFSNNPIGGDLKSLEWKN 312 (477)
Q Consensus 287 ------------------------------------------------------~l~~L~~L~Ls~N~l~g~i~~~~~~~ 312 (477)
.+++|++|+|++|+++|.+|. .++.
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~ 654 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGS 654 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-GGGG
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-HHhc
Confidence 246788999999999999996 7889
Q ss_pred CCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcc
Q 011820 313 LQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRF 392 (477)
Q Consensus 313 l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 392 (477)
+++|+.|+|++|+++|.+|..++.+++|++|||++|+++|.+|..+.++++|++|||++|+++|.||...++... ...
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~--~~~ 732 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF--PPA 732 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS--CGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC--CHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987665432 234
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCCCccc
Q 011820 393 GAWNNPNLCYPSGLMSTSHIPLGVKPCQQE 422 (477)
Q Consensus 393 ~~~~N~~lc~~~~~~~~~~~p~~~~~c~~~ 422 (477)
.+.|||.+||. |. .+|...
T Consensus 733 ~~~gN~~Lcg~---------~l--~~C~~~ 751 (768)
T 3rgz_A 733 KFLNNPGLCGY---------PL--PRCDPS 751 (768)
T ss_dssp GGCSCTEEEST---------TS--CCCCSC
T ss_pred HhcCCchhcCC---------CC--cCCCCC
Confidence 56799999997 53 478763
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.6e-36 Score=311.16 Aligned_cols=326 Identities=20% Similarity=0.207 Sum_probs=254.4
Q ss_pred CCCCCCCCCCCcEeCCCC--C----ceEEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccC
Q 011820 62 PDPCGWTPIEGVSCDIYD--D----LWYITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIP 135 (477)
Q Consensus 62 ~d~C~w~~~~Gv~C~~~~--~----~~~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip 135 (477)
++.|.|. ...|.|+..+ . ..+++.|+++ .+.+ .+..|..+.++++|++|++++|.+.+ .++
T Consensus 5 ~~~c~~~-~~~~~c~~~~l~~lp~l~~~l~~L~Ls---~n~i----~~~~~~~~~~l~~L~~L~L~~n~~~~-----~i~ 71 (455)
T 3v47_A 5 TSECSVI-GYNAICINRGLHQVPELPAHVNYVDLS---LNSI----AELNETSFSRLQDLQFLKVEQQTPGL-----VIR 71 (455)
T ss_dssp --CCEEE-TTEEECCSSCCSSCCCCCTTCCEEECC---SSCC----CEECTTTTSSCTTCCEEECCCCSTTC-----EEC
T ss_pred cceeEEE-ccccCcCCCCcccCCCCCCccCEEEec---CCcc----CcCChhHhccCccccEEECcCCcccc-----eEC
Confidence 3456663 1247776431 0 0246667664 2333 24457789999999999999998764 666
Q ss_pred hhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchh--cCCCCCCcEEEeecccCCCCCccc-
Q 011820 136 ISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTN--LGRLSNLKKLVVSGNWLNGRIPDS- 212 (477)
Q Consensus 136 ~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~--l~~l~~L~~L~L~~n~l~~~~p~~- 212 (477)
...+.. +++|++|++++| .+++..|..++++++|++|++++|.+++.+|.. +.++++|++|++++|.+++..|..
T Consensus 72 ~~~~~~-l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 149 (455)
T 3v47_A 72 NNTFRG-LSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149 (455)
T ss_dssp TTTTTT-CTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG
T ss_pred cccccc-cccCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc
Confidence 555555 599999999999 698888999999999999999999999877665 899999999999999999887876
Q ss_pred ccCCccccEeeeecccCCCCccccccCC----------------------------------cCCcEEecccCcCCCCCc
Q 011820 213 FGYLSELLILDLSRNSLSGPLPLSLGGL----------------------------------TSLLKFDLSNNQLEGKIP 258 (477)
Q Consensus 213 l~~l~~L~~L~L~~N~l~~~~p~~l~~l----------------------------------~~L~~L~L~~N~l~~~~p 258 (477)
+.++++|++|++++|++++..+..+..+ ++|++|++++|.+++..|
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 8899999999999999998877666544 678888888888876665
Q ss_pred hhhcC---------------------------------------CCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccC
Q 011820 259 KEIGY---------------------------------------LKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNN 299 (477)
Q Consensus 259 ~~l~~---------------------------------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 299 (477)
..+.. .++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 54432 257888888888888888888888999999999999
Q ss_pred CCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 300 PIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 300 ~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
.+++..+ ..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++ +|
T Consensus 310 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~ 387 (455)
T 3v47_A 310 EINKIDD-NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP 387 (455)
T ss_dssp CCCEECT-TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CC
T ss_pred cccccCh-hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CC
Confidence 8885444 367788899999999999987778888889999999999999988888888889999999999999885 44
Q ss_pred CChhhhccccCcccccCCCCCCCCC
Q 011820 380 FSEWFYGKMGRRFGAWNNPNLCYPS 404 (477)
Q Consensus 380 ~~~~~~~~~~~~~~~~~N~~lc~~~ 404 (477)
......-...+.+++++|+..|+.+
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhHhccCCcccEEEccCCCcccCCC
Confidence 3321111223567888999888874
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=9.5e-35 Score=288.32 Aligned_cols=284 Identities=17% Similarity=0.227 Sum_probs=195.5
Q ss_pred CCHHHHHHHHHHHhcCC-C-----CCCCC-CCCCCCCCCCCCCCCcEeCCCCCceEEEEEecCCCCCCCCccccccccch
Q 011820 35 MEKAEQEALYTAIKGFV-G-----NWWNG-SNLYPDPCGWTPIEGVSCDIYDDLWYITALSFGSLHDNSLGCVTNVEFRE 107 (477)
Q Consensus 35 ~~~~~~~aL~~~~~~~~-~-----~~W~~-~~~~~d~C~w~~~~Gv~C~~~~~~~~v~~L~l~~~~~~~l~~~~~g~i~~ 107 (477)
...+|++||++||.++. + ..|.. .....++|.|. |+.|+.... .+.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~---g~~~~~~~~-----------------------~l~- 76 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT---GRALKATAD-----------------------LLE- 76 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSH---HHHHHHHHH-----------------------HHH-
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccC---CcchhhhHH-----------------------HHh-
Confidence 34579999999998662 1 24620 01136899996 999963110 000
Q ss_pred hccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccch
Q 011820 108 QLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPT 187 (477)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~ 187 (477)
-...+++++|++++|.+. .+|.... . +++|++|++++| .++ .+|..++++++|++|+|++|.++ .+|.
T Consensus 77 -~~~~~~l~~L~L~~n~l~------~lp~~l~-~-l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~ 144 (328)
T 4fcg_A 77 -DATQPGRVALELRSVPLP------QFPDQAF-R-LSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR-ALPA 144 (328)
T ss_dssp -HHTSTTCCEEEEESSCCS------SCCSCGG-G-GTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG
T ss_pred -cccccceeEEEccCCCch------hcChhhh-h-CCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc-cCcH
Confidence 112456677777776665 4554422 2 466666666666 466 66666666666666666666666 5666
Q ss_pred hcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCC
Q 011820 188 NLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNI 267 (477)
Q Consensus 188 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 267 (477)
.++++++|++|++++|++.+.+|..+... .++..+.++++|++|++++|.++ .+|..+..+++|
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L 208 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC
Confidence 66666666666666666666666544320 01122345777777777777777 677777777888
Q ss_pred CEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEeccc
Q 011820 268 TLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSN 347 (477)
Q Consensus 268 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~ 347 (477)
++|++++|.+++ +|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+..+++|++|+|++
T Consensus 209 ~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 888888887774 555677888888888888888777775 677788888888888888888888888888889999998
Q ss_pred ccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 348 NKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 348 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
|++.+.+|..++++++|+.+++..|.+.
T Consensus 287 n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888888888877654
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3e-35 Score=290.01 Aligned_cols=231 Identities=28% Similarity=0.405 Sum_probs=180.9
Q ss_pred CCccEEEccC-CCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 144 GSLESLEFRS-NPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 144 ~~L~~L~Ls~-n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
++|++|++++ | .+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 4444444442 4 4555666667777777777777777776777777777777777777777777777777777777777
Q ss_pred eeecccCCCCccccccCCc-CCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCC
Q 011820 223 DLSRNSLSGPLPLSLGGLT-SLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPI 301 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 301 (477)
++++|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+.++++|++|++++|.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 7777777777777777776 778888888888777777777776 88888888888877888888888888888888888
Q ss_pred CCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 302 GGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 302 ~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
++.++. +..+++|++|++++|++++.+|.++..+++|++|+|++|+++|.+|.. .++++|+.+++++|+.-+..|
T Consensus 234 ~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 234 AFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred eeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 766663 667899999999999999999999999999999999999999999986 889999999999998433333
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=291.30 Aligned_cols=287 Identities=23% Similarity=0.247 Sum_probs=163.0
Q ss_pred chhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCcc
Q 011820 106 REQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGEL 185 (477)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~i 185 (477)
+..+.++++|++|+|++|.+.+ ++...+.. +++|++|+|++| .+++..+..+.++++|++|+|++|.+++..
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSA------VEPGAFNN-LFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCE------ECTTTTTT-CTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred HhHccCCCCCCEEECCCCccCE------eChhhhhC-CccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCC
Confidence 4456666666666666666552 22222333 356666666666 455433344556666666666666666555
Q ss_pred chhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCC
Q 011820 186 PTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLK 265 (477)
Q Consensus 186 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 265 (477)
|..+.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 55566666666666666666555555555566666666666665544444455555555555555555544444444444
Q ss_pred ------------------------CCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEc
Q 011820 266 ------------------------NITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDL 321 (477)
Q Consensus 266 ------------------------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~L 321 (477)
+|++|++++|++++..+..+.++++|++|+|++|.++ .++...+..+++|++|+|
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEEC
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEEC
Confidence 4555555555555443445666666666666666665 333334556666666666
Q ss_pred cCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCC
Q 011820 322 SNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLC 401 (477)
Q Consensus 322 s~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc 401 (477)
++|++++..|..+..+++|+.|+|++|++++..+..+..+++|++|+|++|++++.++.. |+.... ......++...|
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~-~~~~~~~~~~~C 357 (477)
T 2id5_A 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRR-WRLNFNRQQPTC 357 (477)
T ss_dssp CSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTT-TSSCCTTCCCBE
T ss_pred CCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhh-hccccCccCcee
Confidence 666666666666666666666666666666555555666666666666666666665432 332221 123334555566
Q ss_pred CC
Q 011820 402 YP 403 (477)
Q Consensus 402 ~~ 403 (477)
..
T Consensus 358 ~~ 359 (477)
T 2id5_A 358 AT 359 (477)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-33 Score=290.92 Aligned_cols=273 Identities=18% Similarity=0.232 Sum_probs=233.4
Q ss_pred ccc-chhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhh--hcCCCCCcEEEcccC
Q 011820 103 VEF-REQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTS--LGHLMKLRSLVLLEN 179 (477)
Q Consensus 103 g~i-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~--l~~l~~L~~L~Ls~n 179 (477)
+.+ +..+.++++|++|++++|.+.+ ++...+.. +++|++|++++| .+++.+|.. +.++++|++|++++|
T Consensus 68 ~~i~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 68 LVIRNNTFRGLSSLIILKLDYNQFLQ------LETGAFNG-LANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTCTTCE------ECTTTTTT-CTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred ceECcccccccccCCEEeCCCCccCc------cChhhccC-cccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC
Confidence 455 3568889999999999998873 33333444 589999999999 788877766 899999999999999
Q ss_pred CCCCccchh-cCCCCCCcEEEeecccCCCCCcccccCC----------------------------------ccccEeee
Q 011820 180 GLSGELPTN-LGRLSNLKKLVVSGNWLNGRIPDSFGYL----------------------------------SELLILDL 224 (477)
Q Consensus 180 ~l~~~ip~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l----------------------------------~~L~~L~L 224 (477)
.+++..|.. +.++++|++|++++|.+++..|..+..+ ++|++|++
T Consensus 140 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence 999877776 7899999999999999998877666543 67899999
Q ss_pred ecccCCCCccccccC---------------------------------------CcCCcEEecccCcCCCCCchhhcCCC
Q 011820 225 SRNSLSGPLPLSLGG---------------------------------------LTSLLKFDLSNNQLEGKIPKEIGYLK 265 (477)
Q Consensus 225 ~~N~l~~~~p~~l~~---------------------------------------l~~L~~L~L~~N~l~~~~p~~l~~l~ 265 (477)
++|++++..|..+.. .++|++|++++|.+++..|..+..++
T Consensus 220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 999887655543322 25899999999999998999999999
Q ss_pred CCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEec
Q 011820 266 NITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGL 345 (477)
Q Consensus 266 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L 345 (477)
+|++|++++|++++..|..+.++++|++|++++|.+++ ++...+..+++|++|+|++|++++..|..+..+++|++|+|
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 99999999999998889899999999999999999974 44447889999999999999999888999999999999999
Q ss_pred ccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhh
Q 011820 346 SNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWF 384 (477)
Q Consensus 346 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 384 (477)
++|++++..+..+..+++|++|++++|+++|.+|.-.++
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999766667899999999999999999999965444
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-33 Score=303.42 Aligned_cols=326 Identities=21% Similarity=0.342 Sum_probs=265.4
Q ss_pred cchhcc--CCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCC-CchhhhcCC------CCCcEEE
Q 011820 105 FREQLF--ELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTG-PIPTSLGHL------MKLRSLV 175 (477)
Q Consensus 105 i~~~l~--~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g-~ip~~l~~l------~~L~~L~ 175 (477)
+|+.++ ++++|++|++++|.+.+ .+|.. +.. +++|++|++++|..++| .+|..++++ ++|++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~-----~~p~~-l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLT-----KLPTF-LKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCS-----SCCTT-TTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred CchhhhhcccCCCCEEEecCCcCCc-----cChHH-Hhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 999999 99999999999998876 78865 333 68999999999933998 899999887 9999999
Q ss_pred cccCCCCCccch--hcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcC-CcEEecccCc
Q 011820 176 LLENGLSGELPT--NLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTS-LLKFDLSNNQ 252 (477)
Q Consensus 176 Ls~n~l~~~ip~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~ 252 (477)
+++|+++ .+|. .++++++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.
T Consensus 312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 9999999 8998 99999999999999999999999 8999999999999999999 88999999999 9999999999
Q ss_pred CCCCCchhhcCCC--CCCEeeccCCcCCccchHHhh-------cCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccC
Q 011820 253 LEGKIPKEIGYLK--NITLLDLRNNKFSGELTKSLQ-------EMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSN 323 (477)
Q Consensus 253 l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~ 323 (477)
++ .+|..+..++ +|++|++++|.+++.+|..+. .+++|++|++++|.++ .+|...+..+++|++|+|++
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCC
Confidence 99 8888877655 899999999999998888887 7889999999999998 77776677789999999999
Q ss_pred CCCCCCchhhhcC-C-------CCCCEEecccccCCCCChhhcC--CCCCCCEEEeeCCcCeeecCCChhhhccccCccc
Q 011820 324 TGLAGEVPEFMAE-L-------KRLRFLGLSNNKLTGTISPKLA--TMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFG 393 (477)
Q Consensus 324 n~l~~~ip~~l~~-l-------~~L~~L~Ls~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 393 (477)
|+++ .+|..+.. . ++|+.|+|++|+++ .+|..+. .+++|++|+|++|++++ +|........+ +.++
T Consensus 467 N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L-~~L~ 542 (636)
T 4eco_A 467 NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL-KGFG 542 (636)
T ss_dssp SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC-CEEE
T ss_pred CCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC-CEEE
Confidence 9998 66654332 2 28999999999999 7888887 89999999999999998 88765433333 5667
Q ss_pred ccCCCCCCCCCCCCCccCCCCCCCCCcccccccCCCCccccCCCcc----ccccccceeeccccccc
Q 011820 394 AWNNPNLCYPSGLMSTSHIPLGVKPCQQEVTLLQPHSKNLLGGENL----NQNAHFMASLGFSSYSV 456 (477)
Q Consensus 394 ~~~N~~lc~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~n~~ 456 (477)
+++|..+. .+...+.+|..+..|+.-... +..+++. ...++....+.+++|.+
T Consensus 543 Ls~N~~ls---~N~l~~~~p~~l~~l~~L~~L-------~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 543 IRNQRDAQ---GNRTLREWPEGITLCPSLTQL-------QIGSNDIRKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp CCSCBCTT---CCBCCCCCCTTGGGCSSCCEE-------ECCSSCCCBCCSCCCTTCCEEECCSCTT
T ss_pred CCCCcccc---cCcccccChHHHhcCCCCCEE-------ECCCCcCCccCHhHhCcCCEEECcCCCC
Confidence 77766332 234456677777766642111 1222211 11234566888888854
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.8e-33 Score=296.12 Aligned_cols=304 Identities=20% Similarity=0.188 Sum_probs=260.0
Q ss_pred EEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCch
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIP 162 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip 162 (477)
.++.+++.. +.+ .+..+..+.++++|++|++++|.+. .+|.. +.. +++|++|++++| .+++..|
T Consensus 255 ~L~~L~l~~---n~l----~~~~~~~~~~l~~L~~L~l~~n~l~------~lp~~-l~~-l~~L~~L~l~~n-~l~~~~~ 318 (606)
T 3t6q_A 255 SVESINLQK---HYF----FNISSNTFHCFSGLQELDLTATHLS------ELPSG-LVG-LSTLKKLVLSAN-KFENLCQ 318 (606)
T ss_dssp EEEEEECTT---CCC----SSCCTTTTTTCTTCSEEECTTSCCS------CCCSS-CCS-CTTCCEEECTTC-CCSBGGG
T ss_pred ceeEEEeec---Ccc----CccCHHHhccccCCCEEeccCCccC------CCChh-hcc-cccCCEEECccC-CcCcCch
Confidence 566776642 222 1333445889999999999999887 56654 233 689999999999 7998888
Q ss_pred hhhcCCCCCcEEEcccCCCCCccchh-cCCCCCCcEEEeecccCCCCC--cccccCCccccEeeeecccCCCCccccccC
Q 011820 163 TSLGHLMKLRSLVLLENGLSGELPTN-LGRLSNLKKLVVSGNWLNGRI--PDSFGYLSELLILDLSRNSLSGPLPLSLGG 239 (477)
Q Consensus 163 ~~l~~l~~L~~L~Ls~n~l~~~ip~~-l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 239 (477)
..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 89999999999999999999877764 889999999999999998765 778899999999999999999888999999
Q ss_pred CcCCcEEecccCcCCCCCch-hhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCc-CCh-hhhcCCCCc
Q 011820 240 LTSLLKFDLSNNQLEGKIPK-EIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGD-LKS-LEWKNLQNL 316 (477)
Q Consensus 240 l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-i~~-~~~~~l~~L 316 (477)
+++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+.++++|++|++++|.+.+. ++. ..+..+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 99999999999999877654 488999999999999999998899999999999999999999752 221 357889999
Q ss_pred cEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccC
Q 011820 317 VILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWN 396 (477)
Q Consensus 317 ~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 396 (477)
++|++++|++++..|..+..+++|+.|+|++|++++.+|..+.+++.| +|++++|++++..|........+ +.+++.+
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~ 556 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ-RTINLRQ 556 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS-SEEECTT
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC-CEEeCCC
Confidence 999999999998889999999999999999999999999999999999 99999999997776544333333 6788999
Q ss_pred CCCCCCCC
Q 011820 397 NPNLCYPS 404 (477)
Q Consensus 397 N~~lc~~~ 404 (477)
||+.|++.
T Consensus 557 N~~~c~c~ 564 (606)
T 3t6q_A 557 NPLDCTCS 564 (606)
T ss_dssp CCEECSGG
T ss_pred CCccccCC
Confidence 99999864
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-32 Score=293.54 Aligned_cols=144 Identities=22% Similarity=0.181 Sum_probs=109.4
Q ss_pred hhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCC
Q 011820 260 EIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKR 339 (477)
Q Consensus 260 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~ 339 (477)
.+..+++|++|++++|.+++..|..+.++++|++|++++|.+++.+....+..+++|++|++++|++++..|..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 44555566666666666665566666667777777777777765322235778889999999999999888888999999
Q ss_pred CCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCCC
Q 011820 340 LRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYPS 404 (477)
Q Consensus 340 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~~ 404 (477)
|++|++++|++++.+|..+..+++|++|+|++|+++ .+|..........+.+++.+||+.|++.
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999888999999999999999999998 6776633322223678899999999874
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=285.00 Aligned_cols=268 Identities=18% Similarity=0.164 Sum_probs=205.4
Q ss_pred cccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCC
Q 011820 103 VEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 103 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
+..|..+.++++|++|+|++|.+. .+|...+.. +++|++|++++| .+++..|..+.++++|++|++++|.++
T Consensus 70 ~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~-l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 70 AVEPGAFNNLFNLRTLGLRSNRLK------LIPLGVFTG-LSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCC------SCCTTSSTT-CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCC
T ss_pred EeChhhhhCCccCCEEECCCCcCC------ccCcccccC-CCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccc
Confidence 334677888999999999998876 456554444 578888888888 677777777888888888888888887
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCc---------------------
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLT--------------------- 241 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~--------------------- 241 (477)
+..|..+.++++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+..+..++
T Consensus 142 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT
T ss_pred eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc
Confidence 76677777788888888888877766656677777777777777766655444554444
Q ss_pred ---CCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccE
Q 011820 242 ---SLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVI 318 (477)
Q Consensus 242 ---~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~ 318 (477)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+|++|.+++..+ ..+..+++|++
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 300 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRV 300 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCE
T ss_pred cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCE
Confidence 55556666677774444678899999999999999998888889999999999999999986555 47889999999
Q ss_pred EEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChh-hcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 319 LDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISP-KLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 319 L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
|+|++|++++..+..+..+++|+.|+|++|.+....+. ++. ..+..+++.++...+.-|..
T Consensus 301 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF--RRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp EECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH--TTTTSSCCTTCCCBEEESGG
T ss_pred EECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH--hhhhccccCccCceeCCchH
Confidence 99999999988788889999999999999999864332 221 22334556677777777743
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-32 Score=285.05 Aligned_cols=282 Identities=19% Similarity=0.244 Sum_probs=208.4
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCC-CchhhhcCCCCCcEEEcccCCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTG-PIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g-~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
..|..+.++++|++|++++|.+. .+|.. .+++|++|++++| .+++ .+|..++++++|++|++++|.++
T Consensus 60 ~~~~~~~~l~~L~~L~Ls~N~l~------~lp~~----~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 60 LDISVFKFNQELEYLDLSHNKLV------KISCH----PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp EEGGGGTTCTTCCEEECCSSCCC------EEECC----CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cChHHhhcccCCCEEecCCCcee------ecCcc----ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccc
Confidence 34566677777777777777665 45543 2567777777777 5665 46677777777777777777765
Q ss_pred CccchhcCCCCCC--cEEEeecccC--CCCCcccccCCc-----------------------------------------
Q 011820 183 GELPTNLGRLSNL--KKLVVSGNWL--NGRIPDSFGYLS----------------------------------------- 217 (477)
Q Consensus 183 ~~ip~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~----------------------------------------- 217 (477)
+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 129 ~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 129 K---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred h---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence 4 223344444 5555555555 344444333321
Q ss_pred ------------------------------------------cccEeeeecccCCCCccccc------------------
Q 011820 218 ------------------------------------------ELLILDLSRNSLSGPLPLSL------------------ 237 (477)
Q Consensus 218 ------------------------------------------~L~~L~L~~N~l~~~~p~~l------------------ 237 (477)
+|++|++++|+++|.+|..+
T Consensus 206 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred cceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 45556666666555555443
Q ss_pred -----------------------------------cCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCc--c
Q 011820 238 -----------------------------------GGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSG--E 280 (477)
Q Consensus 238 -----------------------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ 280 (477)
..+++|++|++++|.+++.+|..+..+++|++|++++|++++ .
T Consensus 286 n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp CCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred cceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 567889999999999998889999999999999999999987 6
Q ss_pred chHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCC
Q 011820 281 LTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLAT 360 (477)
Q Consensus 281 ~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 360 (477)
+|..+.++++|++|++++|.+++.+|...+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence 6788999999999999999998768865678889999999999999988887664 79999999999999 88988889
Q ss_pred CCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCC
Q 011820 361 MPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYP 403 (477)
Q Consensus 361 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~ 403 (477)
+++|++|++++|+++ .+|......-...+.+++.+||..|++
T Consensus 443 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence 999999999999998 677652111122357788999999876
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-31 Score=284.95 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=137.5
Q ss_pred cCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCc--cchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCC
Q 011820 238 GGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSG--ELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQN 315 (477)
Q Consensus 238 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~ 315 (477)
..+++|++|++++|.+++.+|..+.++++|++|++++|++++ .+|..+.++++|++|++++|.+++.+|...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 677889999999999998889999999999999999999986 456778999999999999999987688766788899
Q ss_pred ccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC-hhhhccccCcccc
Q 011820 316 LVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS-EWFYGKMGRRFGA 394 (477)
Q Consensus 316 L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~~~~~~ 394 (477)
|++|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. ...... .+.+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~-L~~L~l 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS-LQYIWL 504 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT-CCCEEC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC-CCEEEe
Confidence 99999999999987776554 79999999999999 78888889999999999999999 67765 222222 256788
Q ss_pred cCCCCCCCC
Q 011820 395 WNNPNLCYP 403 (477)
Q Consensus 395 ~~N~~lc~~ 403 (477)
.+||+.|++
T Consensus 505 ~~N~~~c~c 513 (562)
T 3a79_B 505 HDNPWDCTC 513 (562)
T ss_dssp CSCCBCCCH
T ss_pred cCCCcCCCc
Confidence 999999976
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=6.1e-31 Score=276.77 Aligned_cols=329 Identities=18% Similarity=0.165 Sum_probs=198.4
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSG 183 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~ 183 (477)
..|..+.++++|++|++++|.+.+ ++...+.. +++|++|++++| .++ .+|.. .+++|++|++++|.+++
T Consensus 36 ~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~-l~~L~~L~Ls~N-~l~-~lp~~--~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 36 LWTSDILSLSKLRILIISHNRIQY------LDISVFKF-NQELEYLDLSHN-KLV-KISCH--PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTT-CTTCCEEECCSS-CCC-EEECC--CCCCCSEEECCSSCCSS
T ss_pred cChhhccccccccEEecCCCccCC------cChHHhhc-ccCCCEEecCCC-cee-ecCcc--ccCCccEEeccCCcccc
Confidence 344567778888888888877763 33233443 477888888887 576 56665 77788888888888776
Q ss_pred -ccchhcCCCCCCcEEEeecccCCCCCcccccCCccc--cEeeeecccC--CCCccccccCCc-----------------
Q 011820 184 -ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSEL--LILDLSRNSL--SGPLPLSLGGLT----------------- 241 (477)
Q Consensus 184 -~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~N~l--~~~~p~~l~~l~----------------- 241 (477)
.+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred ccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhh
Confidence 467778888888888888887765 345566666 8888888877 555555554422
Q ss_pred ------------------------------------------------------------------CCcEEecccCcCCC
Q 011820 242 ------------------------------------------------------------------SLLKFDLSNNQLEG 255 (477)
Q Consensus 242 ------------------------------------------------------------------~L~~L~L~~N~l~~ 255 (477)
+|++|++++|.++|
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred hhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence 45556666666666
Q ss_pred CCchhh-----cCCCCCCEeeccCCcCCccch-HHh-------------------------hcCCCCCEEEcccCCCCCc
Q 011820 256 KIPKEI-----GYLKNITLLDLRNNKFSGELT-KSL-------------------------QEMYSLEEMVFSNNPIGGD 304 (477)
Q Consensus 256 ~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~l-------------------------~~l~~L~~L~Ls~N~l~g~ 304 (477)
.+|..+ ..+++|+.+++++|.+ .+| ..+ ..+++|++|++++|.+++.
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred ccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChh
Confidence 666655 5555555555555554 222 111 4566677777777777655
Q ss_pred CChhhhcCCCCccEEEccCCCCCC--CchhhhcCCCCCCEEecccccCCCCChhh-cCCCCCCCEEEeeCCcCeeecCCC
Q 011820 305 LKSLEWKNLQNLVILDLSNTGLAG--EVPEFMAELKRLRFLGLSNNKLTGTISPK-LATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 305 i~~~~~~~l~~L~~L~Ls~n~l~~--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
+|. .+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..+++|++|++++|++++.+|..
T Consensus 340 ~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 340 VFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 554 45666777777777777765 45566677777777777777777656554 566667777777777776665533
Q ss_pred hhhhccccCcccccCCCCCCCCCCCCCccCCCCCCCCCcccccccCCCCccccCCCccccccccceeecccccccceehH
Q 011820 382 EWFYGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVKPCQQEVTLLQPHSKNLLGGENLNQNAHFMASLGFSSYSVNGFWW 461 (477)
Q Consensus 382 ~~~~~~~~~~~~~~~N~~lc~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~~ 461 (477)
.. ...+.+++++|... .+|..+..++.-.+.+-.......-....-..++....+.+++|.+.+.+.
T Consensus 419 l~---~~L~~L~Ls~N~l~----------~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 419 LP---PRIKVLDLHSNKIK----------SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CC---TTCCEEECCSSCCC----------CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hc---ccCCEEECCCCccc----------ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 21 11244555555322 344434433321111101111110000011223455688999999999766
Q ss_pred H
Q 011820 462 V 462 (477)
Q Consensus 462 ~ 462 (477)
.
T Consensus 486 ~ 486 (520)
T 2z7x_B 486 R 486 (520)
T ss_dssp H
T ss_pred c
Confidence 4
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.1e-31 Score=287.56 Aligned_cols=260 Identities=23% Similarity=0.222 Sum_probs=173.0
Q ss_pred cccchh-ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCC
Q 011820 103 VEFREQ-LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGL 181 (477)
Q Consensus 103 g~i~~~-l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l 181 (477)
+.+|+. +.++++|++|++++|.+. .++...+.. +++|++|+|++| .+++..|..++++++|++|+|++|.+
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAY-AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTT-CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCHHHHccCCCCcEEECCCCCCC------CCChHHhcC-CCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 456665 567999999999998887 344433444 589999999999 68888788889999999999999999
Q ss_pred CCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCC---------------------
Q 011820 182 SGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGL--------------------- 240 (477)
Q Consensus 182 ~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l--------------------- 240 (477)
++..+..|+++++|++|+|++|.+++..|..+..+++|++|++++|.+++..+..+.++
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~ 215 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 215 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhhe
Confidence 85444456889999999999999998888889999999999999998876432222211
Q ss_pred ----------------cCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCc
Q 011820 241 ----------------TSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGD 304 (477)
Q Consensus 241 ----------------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 304 (477)
++|+.|++++|.+++ +..+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++
T Consensus 216 L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 292 (597)
T ss_dssp EECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-
T ss_pred eeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-
Confidence 123444444444443 2345555666666666666665555566666666666666666552
Q ss_pred CChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeec
Q 011820 305 LKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGEL 378 (477)
Q Consensus 305 i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 378 (477)
+|. .+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|+++|..
T Consensus 293 l~~-~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 293 LNL-YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp EEC-SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCc-ccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 332 3344556666666666665 4555555566666666666666532 2 445556666666666666543
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=7.2e-31 Score=277.85 Aligned_cols=171 Identities=23% Similarity=0.245 Sum_probs=129.1
Q ss_pred CCCCCCCCCcEeCCCCC---------ceEEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCcc
Q 011820 64 PCGWTPIEGVSCDIYDD---------LWYITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTI 134 (477)
Q Consensus 64 ~C~w~~~~Gv~C~~~~~---------~~~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~i 134 (477)
.|.|. || |+.... ..+++.|+++ .+.+ .+..|..+.++++|++|++++|.+. .+
T Consensus 3 ~C~~~---~~-c~~~~~~l~~ip~~~~~~L~~L~Ls---~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~------~~ 65 (549)
T 2z81_A 3 SCDAS---GV-CDGRSRSFTSIPSGLTAAMKSLDLS---FNKI----TYIGHGDLRACANLQVLILKSSRIN------TI 65 (549)
T ss_dssp EECTT---SE-EECTTSCCSSCCSCCCTTCCEEECC---SSCC----CEECSSTTSSCTTCCEEECTTSCCC------EE
T ss_pred cCCCC---ce-EECCCCccccccccCCCCccEEECc---CCcc----CccChhhhhcCCcccEEECCCCCcC------cc
Confidence 48884 77 874321 0135556654 2322 2445678899999999999999887 34
Q ss_pred ChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCC-ccchhcCCCCCCcEEEeecccCCCCCc-cc
Q 011820 135 PISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSG-ELPTNLGRLSNLKKLVVSGNWLNGRIP-DS 212 (477)
Q Consensus 135 p~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~l~~L~~L~L~~n~l~~~~p-~~ 212 (477)
+...+.. +++|++|++++| .+++..|..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+.+| ..
T Consensus 66 ~~~~~~~-l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 143 (549)
T 2z81_A 66 EGDAFYS-LGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143 (549)
T ss_dssp CTTTTTT-CTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred Chhhccc-cccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh
Confidence 4444444 589999999999 7998888889999999999999999986 467789999999999999998555555 57
Q ss_pred ccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcC
Q 011820 213 FGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQL 253 (477)
Q Consensus 213 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 253 (477)
+.++++|++|++++|.+++..|..+..+++|++|+++.|.+
T Consensus 144 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred hhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 89999999999999999988887776655555555544443
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.2e-31 Score=268.94 Aligned_cols=278 Identities=23% Similarity=0.258 Sum_probs=193.6
Q ss_pred cccchh-ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCC
Q 011820 103 VEFREQ-LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGL 181 (477)
Q Consensus 103 g~i~~~-l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l 181 (477)
..+|+. +.++++|++|++++|.+. .++...+.. +++|++|++++| .+++..|..++++++|++|++++|.+
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAY-AHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTT-CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hhCChhHhcccccCcEEECCCCccc------ccChhhccC-CCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCcc
Confidence 456655 467888888888888776 455443444 578888888888 68877777788888888888888888
Q ss_pred CCccchh-cCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCC-----
Q 011820 182 SGELPTN-LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEG----- 255 (477)
Q Consensus 182 ~~~ip~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~----- 255 (477)
+ .+|.. +.++++|++|++++|.+++..|..+..+++|++|++++|++++.. +..+++|++|++++|.+++
T Consensus 130 ~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~ 205 (390)
T 3o6n_A 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPI 205 (390)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCS
T ss_pred C-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCC
Confidence 8 45544 578888888888888888777777888888888888888887542 2333444444444443331
Q ss_pred -------------CCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEcc
Q 011820 256 -------------KIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLS 322 (477)
Q Consensus 256 -------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls 322 (477)
.+|. ...++|++|++++|.+++. ..+..+++|++|++++|.+.+..+. .+..+++|++|+++
T Consensus 206 ~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 206 AVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYIS 280 (390)
T ss_dssp SCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECC
T ss_pred cceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECC
Confidence 1121 1235677777777777653 4677778888888888887755453 67777888888888
Q ss_pred CCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCC
Q 011820 323 NTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCY 402 (477)
Q Consensus 323 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~ 402 (477)
+|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++. +|... ... .+.+++.+|+..|.
T Consensus 281 ~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~--~~~-L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLST--HHT-LKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CCCCT--TCC-CSEEECCSSCEEHH
T ss_pred CCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eCchh--hcc-CCEEEcCCCCccch
Confidence 888873 5666667788888888888887 567677777888888888888763 34221 122 25667778887775
Q ss_pred C
Q 011820 403 P 403 (477)
Q Consensus 403 ~ 403 (477)
.
T Consensus 355 ~ 355 (390)
T 3o6n_A 355 S 355 (390)
T ss_dssp H
T ss_pred h
Confidence 3
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=267.31 Aligned_cols=266 Identities=20% Similarity=0.193 Sum_probs=225.3
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSG 183 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~ 183 (477)
++|..+. ++|++|++++|.+. .+|...+.. +++|++|++++| .+++..|..+.++++|++|++++|.+++
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~------~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRIT------YISNSDLQR-CVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCC------EECTTTTTT-CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred ccccccc--ccCcEEECCCCcCc------ccCHHHhcc-CCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 5666554 58999999999987 466544554 599999999999 7998878889999999999999999996
Q ss_pred ccchhcCCCCCCcEEEeecccCCCCCc-ccccCCccccEeeeeccc-CCCCccccccCCcCCcEEecccCcCCCCCchhh
Q 011820 184 ELPTNLGRLSNLKKLVVSGNWLNGRIP-DSFGYLSELLILDLSRNS-LSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEI 261 (477)
Q Consensus 184 ~ip~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 261 (477)
..+..+.++++|++|++++|.+++..+ ..+.++++|++|++++|. +.+..+..+..+++|++|++++|.+++..|..+
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 555559999999999999999995444 478999999999999995 666667889999999999999999998889999
Q ss_pred cCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChh--hhcCCCCccEEEccCCCCCC----Cchhhhc
Q 011820 262 GYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSL--EWKNLQNLVILDLSNTGLAG----EVPEFMA 335 (477)
Q Consensus 262 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~--~~~~l~~L~~L~Ls~n~l~~----~ip~~l~ 335 (477)
..+++|++|++++|.++......+..+++|++|++++|.+++..+.. .......++.++++++.+++ .+|.++.
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred hccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 99999999999999997544445667999999999999998533221 12346789999999999986 4788899
Q ss_pred CCCCCCEEecccccCCCCChhh-cCCCCCCCEEEeeCCcCeeecCC
Q 011820 336 ELKRLRFLGLSNNKLTGTISPK-LATMPCVSALYLNGNNLSGELQF 380 (477)
Q Consensus 336 ~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~ 380 (477)
.+++|+.|++++|+++ .+|.. +..+++|++|+|++|+++|.+|.
T Consensus 275 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 275 QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 9999999999999999 67766 58999999999999999999873
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.1e-30 Score=279.96 Aligned_cols=144 Identities=24% Similarity=0.234 Sum_probs=97.2
Q ss_pred ccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCc
Q 011820 237 LGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNL 316 (477)
Q Consensus 237 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L 316 (477)
+..+++|++|++++|.++ .+|..+.++++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 444556666666666665 5566666666666666666666666566666677777777777766666665556667777
Q ss_pred cEEEccCCCCCCCc--hhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 317 VILDLSNTGLAGEV--PEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 317 ~~L~Ls~n~l~~~i--p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
++|++++|.+++.. |..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 77777777776554 566677777777777777777666777777777777777777777665543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.6e-30 Score=276.40 Aligned_cols=343 Identities=19% Similarity=0.140 Sum_probs=209.7
Q ss_pred EEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCch
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIP 162 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip 162 (477)
+++.|++. .|.+. +..+..+.++++|++|++++|.+. .++...+.. +++|++|++++| .++ .+|
T Consensus 53 ~L~~L~Ls---~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~-l~~L~~L~Ls~N-~l~-~lp 116 (562)
T 3a79_B 53 RTKALSLS---QNSIS----ELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLF-NQDLEYLDVSHN-RLQ-NIS 116 (562)
T ss_dssp TCCEEECC---SSCCC----CCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTT-CTTCCEEECTTS-CCC-EEC
T ss_pred CcCEEECC---CCCcc----ccChhhhccCCCccEEECCCCCCC------cCCHHHhCC-CCCCCEEECCCC-cCC-ccC
Confidence 46666664 23332 333457788888888888888776 343333444 478888888888 577 566
Q ss_pred hhhcCCCCCcEEEcccCCCCC-ccchhcCCCCCCcEEEeecccCCCCCcccccCCccc--cEeeeecccC--CCCccccc
Q 011820 163 TSLGHLMKLRSLVLLENGLSG-ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSEL--LILDLSRNSL--SGPLPLSL 237 (477)
Q Consensus 163 ~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~N~l--~~~~p~~l 237 (477)
.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 65 78888888888888875 3467788888888888888888753 33444444 8888888887 66666555
Q ss_pred cCCc----------------------------------------------------------------------------
Q 011820 238 GGLT---------------------------------------------------------------------------- 241 (477)
Q Consensus 238 ~~l~---------------------------------------------------------------------------- 241 (477)
..+.
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 4432
Q ss_pred -----CCcEEecccCcCCCCCchhh-----cCCCC--------------------------CCEeeccCCcCCccchHHh
Q 011820 242 -----SLLKFDLSNNQLEGKIPKEI-----GYLKN--------------------------ITLLDLRNNKFSGELTKSL 285 (477)
Q Consensus 242 -----~L~~L~L~~N~l~~~~p~~l-----~~l~~--------------------------L~~L~Ls~N~l~~~~p~~l 285 (477)
+|++|++++|.++|.+|..+ .+++. |++|++++|.+.... ..
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~ 349 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CP 349 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CC
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--Cc
Confidence 45555555555555555444 22222 223333333222110 01
Q ss_pred hcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCC--CchhhhcCCCCCCEEecccccCCCCChhh-cCCCC
Q 011820 286 QEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAG--EVPEFMAELKRLRFLGLSNNKLTGTISPK-LATMP 362 (477)
Q Consensus 286 ~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~ 362 (477)
..+++|++|++++|.+++.++. .+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 5667788888888888765654 56777888888888888875 34566777888888888888888756653 66777
Q ss_pred CCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCCCCCCCccCCCCCCCCCcccccccCCCCccccCCCccccc
Q 011820 363 CVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVKPCQQEVTLLQPHSKNLLGGENLNQN 442 (477)
Q Consensus 363 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 442 (477)
+|++|++++|++++.+|.... ...+.+++++|... .+|..+..++.-...+-.......-....-+.
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~---~~L~~L~L~~N~l~----------~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM----------SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC---TTCSEEECCSSCCC----------CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cCCEEECCCCCCCcchhhhhc---CcCCEEECCCCcCc----------ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 888888888888776664421 12245566666332 33444443332111110111111000011222
Q ss_pred cccceeecccccccceehHH
Q 011820 443 AHFMASLGFSSYSVNGFWWV 462 (477)
Q Consensus 443 ~~~~~~~~~~~n~~~g~~~~ 462 (477)
++....+.+++|.+.|.+..
T Consensus 496 l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCEEEecCCCcCCCcch
Confidence 34556789999999997764
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=5e-30 Score=278.48 Aligned_cols=254 Identities=25% Similarity=0.249 Sum_probs=128.7
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCccccc--CCccccE
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFG--YLSELLI 221 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~ 221 (477)
++|++|++++| .+++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++
T Consensus 97 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 97 TNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp TTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 44444444444 34433334444444455555554444444444444445555555555544444443332 2345555
Q ss_pred eeeecccCCCCccccccCC---------------------------cCCcEEecccCcCCCCCchhhcCCCC--CCEeec
Q 011820 222 LDLSRNSLSGPLPLSLGGL---------------------------TSLLKFDLSNNQLEGKIPKEIGYLKN--ITLLDL 272 (477)
Q Consensus 222 L~L~~N~l~~~~p~~l~~l---------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~L 272 (477)
|++++|.+++..|..+..+ ++|++|++++|.+++..|..+..++. |++|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 5555555544433322211 12222223333333222333333322 555555
Q ss_pred cCCcCCccchHHhhcCCCCCEEEcccCCCCCcCC--------------------------------hhhhcCCCCccEEE
Q 011820 273 RNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLK--------------------------------SLEWKNLQNLVILD 320 (477)
Q Consensus 273 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~--------------------------------~~~~~~l~~L~~L~ 320 (477)
++|++++..+..+..+++|++|++++|.+.+..+ ...+..+++|++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 5555554444445555555555555554432211 11345567777777
Q ss_pred ccCCCCCCCchhhhcCCCCCCEEeccc----------------------------ccCCCCChhhcCCCCCCCEEEeeCC
Q 011820 321 LSNTGLAGEVPEFMAELKRLRFLGLSN----------------------------NKLTGTISPKLATMPCVSALYLNGN 372 (477)
Q Consensus 321 Ls~n~l~~~ip~~l~~l~~L~~L~Ls~----------------------------N~l~g~ip~~l~~l~~L~~L~Ls~N 372 (477)
+++|.+++..|..+..+++|++|++++ |++++..|..+..+++|++|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 778877777666666666666655544 4455555677778888888888888
Q ss_pred cCeeecCCChhhhccccCcccccCCC
Q 011820 373 NLSGELQFSEWFYGKMGRRFGAWNNP 398 (477)
Q Consensus 373 ~l~g~ip~~~~~~~~~~~~~~~~~N~ 398 (477)
++++.+|...+..-...+.+++++|.
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred cCccccCcccccCcccccEEecCCCC
Confidence 88888774332211112344555554
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.6e-30 Score=278.96 Aligned_cols=306 Identities=21% Similarity=0.250 Sum_probs=221.5
Q ss_pred EEEEEecCCCCCCCCccccccccc-hhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCc
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFR-EQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPI 161 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~-~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~i 161 (477)
.++.|+++ .|.+. .++ ..+.++++|++|+|++|.+. .||...|.. +++|++|+|++| .+++..
T Consensus 53 ~~~~LdLs---~N~i~-----~l~~~~f~~l~~L~~L~Ls~N~i~------~i~~~~f~~-L~~L~~L~Ls~N-~l~~l~ 116 (635)
T 4g8a_A 53 STKNLDLS---FNPLR-----HLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQS-LSHLSTLILTGN-PIQSLA 116 (635)
T ss_dssp TCCEEECT---TSCCC-----EECTTTTTTCTTCCEEECTTCCCC------EECTTTTTT-CTTCCEEECTTC-CCCEEC
T ss_pred CCCEEEee---CCCCC-----CCCHHHHhCCCCCCEEECCCCcCC------CcChhHhcC-CCCCCEEEccCC-cCCCCC
Confidence 46677774 34442 454 57899999999999999987 577666665 599999999999 698776
Q ss_pred hhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCC-CCcccccCCccccEeeeecccCCCCccccccCC
Q 011820 162 PTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNG-RIPDSFGYLSELLILDLSRNSLSGPLPLSLGGL 240 (477)
Q Consensus 162 p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 240 (477)
+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ .+|..+..+++|++|++++|++++..+..+..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 7789999999999999999997666679999999999999999975 467888999999999999998865443332211
Q ss_pred c-------------------------------------------------------------------------------
Q 011820 241 T------------------------------------------------------------------------------- 241 (477)
Q Consensus 241 ~------------------------------------------------------------------------------- 241 (477)
.
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 1
Q ss_pred ----------------------------------------------------CCcEEecccCcCCCCCc-----------
Q 011820 242 ----------------------------------------------------SLLKFDLSNNQLEGKIP----------- 258 (477)
Q Consensus 242 ----------------------------------------------------~L~~L~L~~N~l~~~~p----------- 258 (477)
.|+.|++.+|.+.+..+
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence 11222222221110000
Q ss_pred --------hhhcCCCCCCEeeccCCcC-----------------------------------------------------
Q 011820 259 --------KEIGYLKNITLLDLRNNKF----------------------------------------------------- 277 (477)
Q Consensus 259 --------~~l~~l~~L~~L~Ls~N~l----------------------------------------------------- 277 (477)
.....+++|+.|+++.|.+
T Consensus 357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 357 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp ESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 0001233444444444433
Q ss_pred ---------------------CccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcC
Q 011820 278 ---------------------SGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAE 336 (477)
Q Consensus 278 ---------------------~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~ 336 (477)
.+..+..+..++.|+.|++++|.+.+.+....+..+++|++|+|++|++++..|..|.+
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 22233333444556666666665433333336778899999999999999989999999
Q ss_pred CCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCCC
Q 011820 337 LKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYPS 404 (477)
Q Consensus 337 l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~~ 404 (477)
+++|++|+|++|+|++..|..+..+++|++|||++|++++..|..........+.+++.+||+.|++.
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999998888999999999999999999988886543322223678899999999874
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-30 Score=264.00 Aligned_cols=274 Identities=20% Similarity=0.191 Sum_probs=216.2
Q ss_pred chhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCcc
Q 011820 106 REQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGEL 185 (477)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~i 185 (477)
+..+..+++|++|++++|.+.+ ++...+.. +++|++|++++| .++...+..+.++++|++|++++|.+++..
T Consensus 86 ~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~-l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 86 TYAFAYAHTIQKLYMGFNAIRY------LPPHVFQN-VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC------CCTTTTTT-CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred hhhccCCCCcCEEECCCCCCCc------CCHHHhcC-CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 4578999999999999999873 54444444 599999999999 688443444689999999999999999877
Q ss_pred chhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCC------------------CccccccCCcCCcEEe
Q 011820 186 PTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSG------------------PLPLSLGGLTSLLKFD 247 (477)
Q Consensus 186 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~------------------~~p~~l~~l~~L~~L~ 247 (477)
|..+.++++|++|++++|.+++.. +..+++|++|++++|.+++ .+|.. ..++|++|+
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~ 232 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILK 232 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEE
T ss_pred hhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEE
Confidence 888999999999999999998653 3344555555555444432 12222 246899999
Q ss_pred cccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCC
Q 011820 248 LSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLA 327 (477)
Q Consensus 248 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~ 327 (477)
+++|.+++. ..+..+++|++|++++|.+++..|..+.++++|++|++++|+++ .++. .+..+++|++|++++|+++
T Consensus 233 l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 233 LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL-YGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEEC-SSSCCTTCCEEECCSSCCC
T ss_pred CCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCc-ccCCCCCCCEEECCCCcce
Confidence 999999864 57899999999999999999988999999999999999999998 4554 4567899999999999998
Q ss_pred CCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCC
Q 011820 328 GEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYP 403 (477)
Q Consensus 328 ~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~ 403 (477)
.+|..+..+++|+.|++++|++++ +| +..+++|++|++++|++++..... ..... ......+++..|..
T Consensus 309 -~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~-~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 309 -HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLRA--LFRNV-ARPAVDDADQHCKI 377 (390)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHHH--HTTTC-CTTTBCCCCSCCCT
T ss_pred -ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccchhHHH--HHHHH-HhhcccccCceecc
Confidence 678888889999999999999985 44 778899999999999999864321 11222 22234466666654
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.7e-30 Score=253.29 Aligned_cols=247 Identities=24% Similarity=0.301 Sum_probs=193.5
Q ss_pred CCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCC
Q 011820 113 KHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRL 192 (477)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l 192 (477)
++|++|++++|.+. .++...+.. +++|++|++++| .+++..|..+.++++|++|++++|.++ .+|..+.
T Consensus 52 ~~l~~L~L~~n~i~------~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-- 120 (330)
T 1xku_A 52 PDTALLDLQNNKIT------EIKDGDFKN-LKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-- 120 (330)
T ss_dssp TTCCEEECCSSCCC------CBCTTTTTT-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--
T ss_pred CCCeEEECCCCcCC------EeChhhhcc-CCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--
Confidence 57888888888877 355433444 588888888888 688777888888888888888888887 6676554
Q ss_pred CCCcEEEeecccCCCCCcccccCCccccEeeeecccCCC--CccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEe
Q 011820 193 SNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSG--PLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLL 270 (477)
Q Consensus 193 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 270 (477)
++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEE
Confidence 688888888888887777778888888888888888853 56777888888888888888887 4565443 788888
Q ss_pred eccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccC
Q 011820 271 DLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKL 350 (477)
Q Consensus 271 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l 350 (477)
++++|++++..+..+.++++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|.++..+++|++|++++|++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 888888887777888888888888888888874433 35677888888888888888 7787888888888888888888
Q ss_pred CCCChhhcCC------CCCCCEEEeeCCcCe
Q 011820 351 TGTISPKLAT------MPCVSALYLNGNNLS 375 (477)
Q Consensus 351 ~g~ip~~l~~------l~~L~~L~Ls~N~l~ 375 (477)
++..+..+.. .+.++.|++++|++.
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CccChhhcCCcccccccccccceEeecCccc
Confidence 8655555543 367788888888875
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.1e-30 Score=288.16 Aligned_cols=332 Identities=20% Similarity=0.269 Sum_probs=258.8
Q ss_pred ccchhcc--CCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCC-CchhhhcCCC-------CCcE
Q 011820 104 EFREQLF--ELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTG-PIPTSLGHLM-------KLRS 173 (477)
Q Consensus 104 ~i~~~l~--~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g-~ip~~l~~l~-------~L~~ 173 (477)
.+|+.++ ++++|++|+|++|.+.+ .+|.. +.. +++|++|++++|..++| .+|..+++++ +|++
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~-----~iP~~-l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~ 552 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMT-----QLPDF-LYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCC-----SCCGG-GGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred cCChhhhhccCCCCCEEECcCCCCCc-----cChHH-HhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence 4999988 99999999999998875 78854 344 69999999999933998 8998877665 9999
Q ss_pred EEcccCCCCCccch--hcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcC-CcEEeccc
Q 011820 174 LVLLENGLSGELPT--NLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTS-LLKFDLSN 250 (477)
Q Consensus 174 L~Ls~n~l~~~ip~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~ 250 (477)
|+|++|.++ .+|. .++++++|++|+|++|.++ .+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++
T Consensus 553 L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 553 FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence 999999999 8998 9999999999999999999 888 8999999999999999999 89999999999 99999999
Q ss_pred CcCCCCCchhhcCCCC--CCEeeccCCcCCccchHH---hh--cCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccC
Q 011820 251 NQLEGKIPKEIGYLKN--ITLLDLRNNKFSGELTKS---LQ--EMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSN 323 (477)
Q Consensus 251 N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~---l~--~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~ 323 (477)
|.++ .+|..+..++. |+.|++++|++++.+|.. +. .+++|+.|++++|.++ .+|...+..+++|+.|+|++
T Consensus 629 N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred CCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 9998 78888777654 999999999998866532 22 3458999999999998 78876666889999999999
Q ss_pred CCCCCCchhhhcCC--------CCCCEEecccccCCCCChhhcC--CCCCCCEEEeeCCcCeeecCCChhhhccccCccc
Q 011820 324 TGLAGEVPEFMAEL--------KRLRFLGLSNNKLTGTISPKLA--TMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFG 393 (477)
Q Consensus 324 n~l~~~ip~~l~~l--------~~L~~L~Ls~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 393 (477)
|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|........+ +.++
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~ 782 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL-KAFG 782 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC-CEEE
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC-CEEE
Confidence 9998 667655432 28999999999999 7888887 89999999999999997 77665433333 5677
Q ss_pred ccCCCCCCCCCCCCCccCCCCCCCCCcccccccCCCCccccCCCccccccccceeecccccccce
Q 011820 394 AWNNPNLCYPSGLMSTSHIPLGVKPCQQEVTLLQPHSKNLLGGENLNQNAHFMASLGFSSYSVNG 458 (477)
Q Consensus 394 ~~~N~~lc~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g 458 (477)
+++|+.+. .+...+.+|..+..|+.-....-.+... + .-....++....+.+++|.+.-
T Consensus 783 Ls~N~~ls---~N~l~~~ip~~l~~L~~L~~L~Ls~N~L--~-~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 783 IRHQRDAE---GNRILRQWPTGITTCPSLIQLQIGSNDI--R-KVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCBCTT---CCBCCCCCCTTGGGCSSCCEEECCSSCC--C-BCCSCCCSSSCEEECCSCTTCE
T ss_pred CCCCCCcc---cccccccChHHHhcCCCCCEEECCCCCC--C-ccCHhhcCCCCEEECCCCCCCc
Confidence 77776332 2344566777677766522111111111 0 0011123445578888887644
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=287.79 Aligned_cols=278 Identities=22% Similarity=0.240 Sum_probs=180.9
Q ss_pred EEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCch
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIP 162 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip 162 (477)
+++.|+++. |.+ .+..+..+.++++|++|++++|...+ .++...+.. +++|++|+|++| .+++..|
T Consensus 25 ~l~~LdLs~---N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~-----~i~~~~f~~-L~~L~~L~Ls~N-~l~~~~p 90 (844)
T 3j0a_A 25 TTERLLLSF---NYI----RTVTASSFPFLEQLQLLELGSQYTPL-----TIDKEAFRN-LPNLRILDLGSS-KIYFLHP 90 (844)
T ss_dssp TCCEEEEES---CCC----CEECSSSCSSCCSCSEEEECTTCCCC-----EECTTTTSS-CTTCCEEECTTC-CCCEECT
T ss_pred CcCEEECCC---CcC----CccChhHCcccccCeEEeCCCCCCcc-----ccCHHHhcC-CCCCCEEECCCC-cCcccCH
Confidence 466777742 333 24456778888888888888885543 665544544 588888888888 6887778
Q ss_pred hhhcCCCCCcEEEcccCCCCCccchh--cCCCCCCcEEEeecccCCCCCc-ccccCCccccEeeeecccCCCCccccccC
Q 011820 163 TSLGHLMKLRSLVLLENGLSGELPTN--LGRLSNLKKLVVSGNWLNGRIP-DSFGYLSELLILDLSRNSLSGPLPLSLGG 239 (477)
Q Consensus 163 ~~l~~l~~L~~L~Ls~n~l~~~ip~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 239 (477)
..|.++++|++|+|++|.+++.+|.. +.++++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 88888888888888888888766665 7888888888888888876654 56888888888888888887777766655
Q ss_pred C--cCCcEEecccCcCCCCCchhhcCC-----------------------------------------------------
Q 011820 240 L--TSLLKFDLSNNQLEGKIPKEIGYL----------------------------------------------------- 264 (477)
Q Consensus 240 l--~~L~~L~L~~N~l~~~~p~~l~~l----------------------------------------------------- 264 (477)
+ ++|+.|+++.|.+.+..|..+..+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 5 555555555555554444433333
Q ss_pred ---------------CCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCC
Q 011820 265 ---------------KNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGE 329 (477)
Q Consensus 265 ---------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ 329 (477)
++|+.|++++|.+.+..+..+..+++|+.|+|++|.+++..+ ..+..+++|++|+|++|.+++.
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCcc
Confidence 344555555555554444455555555555555555553333 2455555666666666666555
Q ss_pred chhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 330 VPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 330 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
.|..+..+++|+.|++++|++++..+..+..+++|++|+|++|+++
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 5555555666666666666665544455555666666666666655
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.9e-30 Score=279.38 Aligned_cols=261 Identities=21% Similarity=0.223 Sum_probs=198.8
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccC----------------------------CCCCccchhcCCCCC
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLEN----------------------------GLSGELPTNLGRLSN 194 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n----------------------------~l~~~ip~~l~~l~~ 194 (477)
+++|++|++++| .+++..|..+.++++|++|++++| ++++..|..+..+++
T Consensus 328 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 477888888877 577766666777766666666554 444444566667777
Q ss_pred CcEEEeecccCCCCCc-ccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCC--CCCchhhcCCCCCCEee
Q 011820 195 LKKLVVSGNWLNGRIP-DSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLE--GKIPKEIGYLKNITLLD 271 (477)
Q Consensus 195 L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~ 271 (477)
|++|++++|.+++.+| ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 7777777777766554 56677777777777777777666677777778888888877775 56788889999999999
Q ss_pred ccCCcCCccchHHhhcCCCCCEEEcccCCCCCcC-------ChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEe
Q 011820 272 LRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDL-------KSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLG 344 (477)
Q Consensus 272 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i-------~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ 344 (477)
+++|++++..+..+.++++|++|++++|.+++.. +...+..+++|++|+|++|+++...+..|.++++|+.|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 9999999877778899999999999999987321 112367889999999999999954445789999999999
Q ss_pred cccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChh-hhccccCcccccCCCCCCCCCC
Q 011820 345 LSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEW-FYGKMGRRFGAWNNPNLCYPSG 405 (477)
Q Consensus 345 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~~~~~~N~~lc~~~~ 405 (477)
|++|++++..+..+..+++|+.|+|++|++++..|.... .... .+.+++.+||+.|++..
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTT-CSEEECTTCCCCBCCCC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccc-cCEEEccCCCcccCCcc
Confidence 999999976666678999999999999999976553221 1222 35788899999999853
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5.1e-30 Score=274.63 Aligned_cols=138 Identities=25% Similarity=0.347 Sum_probs=115.3
Q ss_pred EEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCch
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIP 162 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip 162 (477)
+++.|+++. +.+ .+..+..+.++++|++|++++|.+. .++...+.. +++|++|++++| .+++..|
T Consensus 33 ~l~~L~Ls~---n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~------~i~~~~~~~-l~~L~~L~Ls~n-~l~~~~p 97 (606)
T 3vq2_A 33 STKNIDLSF---NPL----KILKSYSFSNFSELQWLDLSRCEIE------TIEDKAWHG-LHHLSNLILTGN-PIQSFSP 97 (606)
T ss_dssp TCCEEECTT---SCC----CEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTT-CTTCCEEECTTC-CCCCCCT
T ss_pred CcCEEECCC---CCc----CEeChhhccCCccCcEEeCCCCccc------ccCHHHhhc-hhhcCEeECCCC-cccccCh
Confidence 466777642 333 2444558899999999999999887 454444544 599999999999 6998889
Q ss_pred hhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCC-CCcccccCCccccEeeeecccCCCCccc
Q 011820 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNG-RIPDSFGYLSELLILDLSRNSLSGPLPL 235 (477)
Q Consensus 163 ~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 235 (477)
..|+++++|++|++++|.+++..|..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..|.
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 999999999999999999997777889999999999999999986 6799999999999999999998765444
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.2e-30 Score=255.75 Aligned_cols=234 Identities=22% Similarity=0.210 Sum_probs=184.1
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCC--ccchhcCCCCCCcEEEeecccCCCCCcccccCCccccE
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSG--ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLI 221 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~--~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 221 (477)
++|++|++++| .++...+..+.++++|++|++++|.++. ..|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 56777777777 5663333345777777777777777762 23566667777888888877776 45666777788888
Q ss_pred eeeecccCCCCcc-ccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCc-cchHHhhcCCCCCEEEcccC
Q 011820 222 LDLSRNSLSGPLP-LSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSG-ELTKSLQEMYSLEEMVFSNN 299 (477)
Q Consensus 222 L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N 299 (477)
|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 8888887775544 567788888888888888887777778888888888888888876 56778888889999999999
Q ss_pred CCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCC-CCCEEEeeCCcCeeec
Q 011820 300 PIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMP-CVSALYLNGNNLSGEL 378 (477)
Q Consensus 300 ~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~i 378 (477)
.+++..+ ..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|+|++|+++|.+
T Consensus 186 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 186 QLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CcCCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 8875444 3677889999999999999877777888999999999999999999999998885 8999999999999887
Q ss_pred CC
Q 011820 379 QF 380 (477)
Q Consensus 379 p~ 380 (477)
+.
T Consensus 265 ~~ 266 (306)
T 2z66_A 265 EH 266 (306)
T ss_dssp GG
T ss_pred Ch
Confidence 64
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=7e-30 Score=271.23 Aligned_cols=335 Identities=19% Similarity=0.203 Sum_probs=187.2
Q ss_pred chhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCcc
Q 011820 106 REQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGEL 185 (477)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~i 185 (477)
+..+.++++|++|++++|.+. .++...+.. +++|++|++++| .+++..|..|.++++|++|++++|.+++..
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQ------TIEDGAYQS-LSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCC------EECTTTTTT-CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred hhHhhCCCCceEEECCCCcCC------ccCcccccC-chhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCC
Confidence 446777778888888777765 344443444 477777777777 576666667777777777777777776443
Q ss_pred chhcCCCCCCcEEEeecccCCC-CCcccccCCccccEeeeecccCCCCccccccC-------------------------
Q 011820 186 PTNLGRLSNLKKLVVSGNWLNG-RIPDSFGYLSELLILDLSRNSLSGPLPLSLGG------------------------- 239 (477)
Q Consensus 186 p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~------------------------- 239 (477)
+..++++++|++|++++|.+++ .+|..+.++++|++|++++|++++..+..+..
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~ 196 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH
Confidence 3356777777777777777765 35677777777777777777665443333332
Q ss_pred --------------------------------------------------------------------------------
Q 011820 240 -------------------------------------------------------------------------------- 239 (477)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (477)
T Consensus 197 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence
Q ss_pred ----CcCCcEEecccCcCCCCCchhh------------------------------------------cCCCCCCEeecc
Q 011820 240 ----LTSLLKFDLSNNQLEGKIPKEI------------------------------------------GYLKNITLLDLR 273 (477)
Q Consensus 240 ----l~~L~~L~L~~N~l~~~~p~~l------------------------------------------~~l~~L~~L~Ls 273 (477)
+++|++|++++|.++ .+|..+ ..+++|++|+++
T Consensus 277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~ 355 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355 (570)
T ss_dssp TTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECC
T ss_pred hhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCc
Confidence 334444444444433 222222 233445555555
Q ss_pred CCcCCccc--hHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCch-hhhcCCCCCCEEecccccC
Q 011820 274 NNKFSGEL--TKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVP-EFMAELKRLRFLGLSNNKL 350 (477)
Q Consensus 274 ~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip-~~l~~l~~L~~L~Ls~N~l 350 (477)
+|.+++.. +..+..+++|++|++++|.+. .++. .+..+++|++|++++|.+++..| ..+..+++|++|++++|++
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred CCccCccccccccccccCccCEEECCCCccc-cccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 55554332 455555666666666666554 2232 25556666666666666665444 3456666677777777766
Q ss_pred CCCChhhcCCCCCCCEEEeeCCcCe-eecCCChhhhccccCcccccCCCCCCCCCCCCCccCCCCCCCCCcccccccCCC
Q 011820 351 TGTISPKLATMPCVSALYLNGNNLS-GELQFSEWFYGKMGRRFGAWNNPNLCYPSGLMSTSHIPLGVKPCQQEVTLLQPH 429 (477)
Q Consensus 351 ~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~N~~lc~~~~~~~~~~~p~~~~~c~~~~~~~~~~ 429 (477)
++.+|..+..+++|++|++++|+++ +.+|........+ +.+++++|.. .+..|..+..|+.-....-..
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-~~L~l~~n~l---------~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQCQL---------EQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTSCC---------CEECTTTTTTCTTCCEEECCS
T ss_pred cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-CEEECCCCcc---------ccCChhhhhcccCCCEEeCCC
Confidence 6666666666677777777777665 4566433222222 3444444422 122243344444311111011
Q ss_pred CccccCCCccccccccceeecccccccceehH
Q 011820 430 SKNLLGGENLNQNAHFMASLGFSSYSVNGFWW 461 (477)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~~ 461 (477)
..........-..++....+.+++|.+.|.++
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 10100001111223455688899999988765
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.6e-30 Score=274.23 Aligned_cols=276 Identities=21% Similarity=0.213 Sum_probs=218.1
Q ss_pred CCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcC
Q 011820 111 ELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLG 190 (477)
Q Consensus 111 ~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~ 190 (477)
.+++++.|++++|.+. .+|...+.. +++|++|+|++| .+++..|..|+++++|++|+|++|.+++..|..|+
T Consensus 49 ~l~~l~~l~l~~~~l~------~lp~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR------KLPAALLDS-FRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEES------EECTHHHHH-CCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCCC------CcCHHHHcc-CCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 4789999999999886 688776655 599999999999 79988888999999999999999999988888899
Q ss_pred CCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCC------
Q 011820 191 RLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYL------ 264 (477)
Q Consensus 191 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l------ 264 (477)
++++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.-+..+..+
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence 99999999999999997666678999999999999999999888899999999999999999986433322221
Q ss_pred -------------------------------CCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCC
Q 011820 265 -------------------------------KNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNL 313 (477)
Q Consensus 265 -------------------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l 313 (477)
++|+.|++++|.+++ +..+..+++|++|+|++|.+.+..|. .+..+
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l 277 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH-PFVKM 277 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG-GGTTC
T ss_pred cCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH-HhcCc
Confidence 234555555555554 24577778888888888888765554 67778
Q ss_pred CCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCccc
Q 011820 314 QNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFG 393 (477)
Q Consensus 314 ~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 393 (477)
++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|++++. |... ... .+.++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~~~~--~~~-L~~L~ 351 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-KLST--HHT-LKNLT 351 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-CCCT--TCC-CSEEE
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-Chhh--cCC-CCEEE
Confidence 888888888888874 5666677888888888888888 6777777788888888888888743 3221 122 24677
Q ss_pred ccCCCCCCCC
Q 011820 394 AWNNPNLCYP 403 (477)
Q Consensus 394 ~~~N~~lc~~ 403 (477)
+++||+.|.+
T Consensus 352 l~~N~~~~~~ 361 (597)
T 3oja_B 352 LSHNDWDCNS 361 (597)
T ss_dssp CCSSCEEHHH
T ss_pred eeCCCCCChh
Confidence 7888877753
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.6e-31 Score=258.17 Aligned_cols=256 Identities=22% Similarity=0.260 Sum_probs=221.2
Q ss_pred CCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCC--CCchhhhcCCCCCcEEEcccCCCCCccchhcC
Q 011820 113 KHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLT--GPIPTSLGHLMKLRSLVLLENGLSGELPTNLG 190 (477)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~--g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~ 190 (477)
++|++|++++|.+. .+|...+.. +++|++|++++| .++ +.+|..+..+++|++|++++|.++ .+|..+.
T Consensus 28 ~~l~~L~L~~n~l~------~i~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNKLQ------SLPHGVFDK-LTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSCCC------CCCTTTTTT-CTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEE
T ss_pred CCCCEEECCCCccC------ccCHhHhhc-cccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccc-cChhhcC
Confidence 68999999999887 577655555 599999999999 677 334778888999999999999998 6888899
Q ss_pred CCCCCcEEEeecccCCCCCc-ccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCC-CCchhhcCCCCCC
Q 011820 191 RLSNLKKLVVSGNWLNGRIP-DSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEG-KIPKEIGYLKNIT 268 (477)
Q Consensus 191 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~ 268 (477)
++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|+
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 99999999999999986655 578999999999999999998889999999999999999999986 5788899999999
Q ss_pred EeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCC-CCCEEeccc
Q 011820 269 LLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELK-RLRFLGLSN 347 (477)
Q Consensus 269 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~-~L~~L~Ls~ 347 (477)
+|++++|++++..|..+..+++|++|++++|.+++ ++...+..+++|++|++++|++++..|..+..++ +|++|+|++
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 99999999998888899999999999999999984 4444688899999999999999999999999885 999999999
Q ss_pred ccCCCCC-----hhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 348 NKLTGTI-----SPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 348 N~l~g~i-----p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
|.+++.. +.++. ..+.+.+..+.+.|..|..
T Consensus 258 N~~~~~c~~~~~~~~l~---~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 258 NDFACTCEHQSFLQWIK---DQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCEECSGGGHHHHHHHH---HTGGGBSCGGGCBEEESGG
T ss_pred CCeecccChHHHHHHHH---hhhhhhccccccccCCchh
Confidence 9998753 23333 3445566677888887754
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.3e-29 Score=251.54 Aligned_cols=253 Identities=23% Similarity=0.276 Sum_probs=191.5
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSG 183 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~ 183 (477)
.+|..+. ++|++|++++|.+. .++...+.. +++|++|++++| .+++..|..+.++++|++|++++|.++
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~------~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~- 115 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDIS------ELRKDDFKG-LQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLV- 115 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCC------EECTTTTTT-CTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCC-
T ss_pred ccCCCCC--CCCeEEECCCCcCC------ccCHhHhhC-CCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCC-
Confidence 4455442 57888888888776 344433444 578888888888 688777888888888888888888887
Q ss_pred ccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCC--CCccccccCCcCCcEEecccCcCCCCCchhh
Q 011820 184 ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLS--GPLPLSLGGLTSLLKFDLSNNQLEGKIPKEI 261 (477)
Q Consensus 184 ~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 261 (477)
.+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+
T Consensus 116 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~ 191 (332)
T 2ft3_A 116 EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL 191 (332)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS
T ss_pred ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc
Confidence 6666554 78888888888888666667888888888888888885 3566777777 88888888888874 56544
Q ss_pred cCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCC
Q 011820 262 GYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLR 341 (477)
Q Consensus 262 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~ 341 (477)
. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus 192 ~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 192 P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267 (332)
T ss_dssp C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCC
T ss_pred c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCC
Confidence 3 678888888888887777778888888888888888875433 35777888888888888887 7777788888888
Q ss_pred EEecccccCCCCChhhcCC------CCCCCEEEeeCCcCe
Q 011820 342 FLGLSNNKLTGTISPKLAT------MPCVSALYLNGNNLS 375 (477)
Q Consensus 342 ~L~Ls~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l~ 375 (477)
.|++++|++++..+..+.. .+.|+.|++++|++.
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 8888888888655555544 356788888888876
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-29 Score=250.48 Aligned_cols=268 Identities=22% Similarity=0.307 Sum_probs=224.3
Q ss_pred CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCC
Q 011820 114 HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLS 193 (477)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~ 193 (477)
+++.++++++.+. .+|... .++|++|++++| .+++..+..+.++++|++|++++|.+++..|..+.+++
T Consensus 32 ~l~~l~~~~~~l~------~lp~~~----~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLE------KVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCC------SCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCeEEEecCCCcc------ccCccC----CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 4677788877765 466432 478999999999 79977777899999999999999999988899999999
Q ss_pred CCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCC--CCchhhcCCCCCCEee
Q 011820 194 NLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEG--KIPKEIGYLKNITLLD 271 (477)
Q Consensus 194 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~ 271 (477)
+|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|+
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 9999999999998 5666554 799999999999998888889999999999999999963 6778899999999999
Q ss_pred ccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCC
Q 011820 272 LRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 272 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 351 (477)
+++|.++. +|..+. ++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 178 l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 178 IADTNITT-IPQGLP--PSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCCCcccc-CCcccc--ccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 99999984 554443 799999999999985544 47889999999999999999888888999999999999999999
Q ss_pred CCChhhcCCCCCCCEEEeeCCcCeeecCCChhhh------ccccCcccccCCCCCC
Q 011820 352 GTISPKLATMPCVSALYLNGNNLSGELQFSEWFY------GKMGRRFGAWNNPNLC 401 (477)
Q Consensus 352 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~------~~~~~~~~~~~N~~lc 401 (477)
.+|..+..+++|++|++++|++++ +|...+.. ......+++.+||..+
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred -cCChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeecCcccc
Confidence 899999999999999999999985 43322110 0111345667777654
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1e-29 Score=252.23 Aligned_cols=267 Identities=23% Similarity=0.299 Sum_probs=225.7
Q ss_pred CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCC
Q 011820 114 HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLS 193 (477)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~ 193 (477)
+++.++++++.+. .+|... .++|++|++++| .+++..|..+.++++|++|++++|.+++..|..+.+++
T Consensus 34 ~l~~l~~~~~~l~------~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLK------AVPKEI----SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCS------SCCSCC----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCcc------ccCCCC----CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 6899999998876 577543 478999999999 69877788899999999999999999988899999999
Q ss_pred CCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCC--CCCchhhcCCCCCCEee
Q 011820 194 NLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLE--GKIPKEIGYLKNITLLD 271 (477)
Q Consensus 194 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~ 271 (477)
+|++|++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++ +..+..+..+ +|++|+
T Consensus 103 ~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 9999999999998 5666554 89999999999999777778999999999999999996 3667778888 999999
Q ss_pred ccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCC
Q 011820 272 LRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 272 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 351 (477)
+++|++++ +|..+. ++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 179 l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 179 ISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCCCCc-cCcccc--CCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 99999985 555443 789999999999985444 47888999999999999999888889999999999999999999
Q ss_pred CCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhc------cccCcccccCCCCCC
Q 011820 352 GTISPKLATMPCVSALYLNGNNLSGELQFSEWFYG------KMGRRFGAWNNPNLC 401 (477)
Q Consensus 352 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~------~~~~~~~~~~N~~lc 401 (477)
.+|..+..+++|++|++++|++++. |...+... .....+++.+||..+
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred -ecChhhhcCccCCEEECCCCCCCcc-ChhHccccccccccccccceEeecCcccc
Confidence 8999999999999999999999854 33221100 112456677887653
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.7e-29 Score=250.53 Aligned_cols=233 Identities=23% Similarity=0.273 Sum_probs=164.6
Q ss_pred EEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCch
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIP 162 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip 162 (477)
+|+.|++.. +.+ ..+|+.++++++|++|++++|.+. .+|.. +.. +++|++|++++| .++ .+|
T Consensus 82 ~l~~L~L~~---n~l-----~~lp~~l~~l~~L~~L~L~~n~l~------~lp~~-~~~-l~~L~~L~Ls~n-~l~-~lp 143 (328)
T 4fcg_A 82 GRVALELRS---VPL-----PQFPDQAFRLSHLQHMTIDAAGLM------ELPDT-MQQ-FAGLETLTLARN-PLR-ALP 143 (328)
T ss_dssp TCCEEEEES---SCC-----SSCCSCGGGGTTCSEEEEESSCCC------CCCSC-GGG-GTTCSEEEEESC-CCC-CCC
T ss_pred ceeEEEccC---CCc-----hhcChhhhhCCCCCEEECCCCCcc------chhHH-Hhc-cCCCCEEECCCC-ccc-cCc
Confidence 688888853 333 378999999999999999999887 56654 333 699999999999 688 889
Q ss_pred hhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcC
Q 011820 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTS 242 (477)
Q Consensus 163 ~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 242 (477)
..++++++|++|++++|++.+.+|..+... .++..+..+++|++|++++|+++ .+|..+..+++
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~ 207 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC
Confidence 999999999999999999998999876540 11123444555555555555555 45555555566
Q ss_pred CcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEcc
Q 011820 243 LLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLS 322 (477)
Q Consensus 243 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls 322 (477)
|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|++|+|+
T Consensus 208 L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 208 LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLR 285 (328)
T ss_dssp CCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECT
T ss_pred CCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCC
Confidence 6666666666553 444566666666666666666666666666666666666666666666664 46667777777777
Q ss_pred CCCCCCCchhhhcCCCCCCEEecccccCC
Q 011820 323 NTGLAGEVPEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 323 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 351 (477)
+|++.+.+|.++..+++|+.+++..+.+.
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777777777777777777777766554
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=279.51 Aligned_cols=283 Identities=22% Similarity=0.186 Sum_probs=225.3
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCc-hhhhcCCCCCcEEEcccCCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPI-PTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~i-p~~l~~l~~L~~L~Ls~n~l~ 182 (477)
.+|. -.++|++|+|++|.+.+ ++...+.. +++|++|+|++| ...+.+ |..|.++++|++|+|++|.++
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~------i~~~~~~~-l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRT------VTASSFPF-LEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCE------ECSSSCSS-CCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCC---CCCCcCEEECCCCcCCc------cChhHCcc-cccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 4665 45799999999999873 43333444 699999999999 566677 788999999999999999999
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCCccc--ccCCccccEeeeecccCCCCcc-ccccCCcCCcEEecccCcCCCCCch
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRIPDS--FGYLSELLILDLSRNSLSGPLP-LSLGGLTSLLKFDLSNNQLEGKIPK 259 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~ 259 (477)
+..|..|+++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 888999999999999999999999877765 8999999999999999987655 6799999999999999999998898
Q ss_pred hhcCC--CCCCEeeccCCcCCccchHHhhcCCC------CCEEEcccCCCCCcCChhh----------------------
Q 011820 260 EIGYL--KNITLLDLRNNKFSGELTKSLQEMYS------LEEMVFSNNPIGGDLKSLE---------------------- 309 (477)
Q Consensus 260 ~l~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~------L~~L~Ls~N~l~g~i~~~~---------------------- 309 (477)
.+..+ ++|+.|+++.|.+.+..|..+..+.+ |++|++++|.+++.++...
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 88877 89999999999999887776666554 8899998887765443211
Q ss_pred -------------hcC--CCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcC
Q 011820 310 -------------WKN--LQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNL 374 (477)
Q Consensus 310 -------------~~~--l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 374 (477)
+.+ .++|++|++++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|++|+|++|++
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 111 25788888888888877777788888888888888888877777788888888888888888
Q ss_pred eeecCCChhhhccccCcccccCCC
Q 011820 375 SGELQFSEWFYGKMGRRFGAWNNP 398 (477)
Q Consensus 375 ~g~ip~~~~~~~~~~~~~~~~~N~ 398 (477)
++..|........+ +.+++++|.
T Consensus 327 ~~~~~~~~~~l~~L-~~L~L~~N~ 349 (844)
T 3j0a_A 327 GELYSSNFYGLPKV-AYIDLQKNH 349 (844)
T ss_dssp SCCCSCSCSSCTTC-CEEECCSCC
T ss_pred CccCHHHhcCCCCC-CEEECCCCC
Confidence 76655443222222 445555553
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1e-29 Score=269.00 Aligned_cols=165 Identities=22% Similarity=0.229 Sum_probs=137.4
Q ss_pred cccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCC
Q 011820 103 VEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 103 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
.++|+.+. ++|++|++++|.+.+ ++...+.. +++|++|++++| .+++..|..|.++++|++|++++|.++
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~------~~~~~~~~-l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITY------IGHGDLRA-CANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCE------ECSSTTSS-CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccCC--CCccEEECcCCccCc------cChhhhhc-CCcccEEECCCC-CcCccChhhccccccCCEEECCCCccC
Confidence 36777664 799999999999873 43333444 699999999999 799888889999999999999999999
Q ss_pred CccchhcCCCCCCcEEEeecccCCC-CCcccccCCccccEeeeecccCCCCcc-ccccCCcCCcEEecccCcCCCCCchh
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNG-RIPDSFGYLSELLILDLSRNSLSGPLP-LSLGGLTSLLKFDLSNNQLEGKIPKE 260 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~ 260 (477)
+..|..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++.+|..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 8877789999999999999999986 467789999999999999999655665 68999999999999999999888887
Q ss_pred hcCCCCCCEeeccCCcC
Q 011820 261 IGYLKNITLLDLRNNKF 277 (477)
Q Consensus 261 l~~l~~L~~L~Ls~N~l 277 (477)
+..+++|++|+++.|.+
T Consensus 168 l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTTCSEEEEEEEECSBS
T ss_pred hhccccCceEecccCcc
Confidence 76655555444444443
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=5.9e-31 Score=259.10 Aligned_cols=250 Identities=21% Similarity=0.191 Sum_probs=213.6
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCC-CCCchhhhc-------CCCCCcEEEcccCC
Q 011820 109 LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGL-TGPIPTSLG-------HLMKLRSLVLLENG 180 (477)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l-~g~ip~~l~-------~l~~L~~L~Ls~n~ 180 (477)
....++|++|++++|.+ .+|.... ..|++|++++| .+ .+.+|..+. ++++|++|++++|.
T Consensus 39 ~~~~~~L~~l~l~~n~l-------~~p~~~~----~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-------ADLGQFT----DIIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEEEECTTHHHHCCTT-------CCCHHHH----HHHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred EccCCCceeEeeccccc-------ccHHHHH----HHHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 45667899999998876 3565432 23888999998 57 556777776 89999999999999
Q ss_pred CCCccchhc--CCCCCCcEEEeecccCCCCCcccccCC-----ccccEeeeecccCCCCccccccCCcCCcEEecccCcC
Q 011820 181 LSGELPTNL--GRLSNLKKLVVSGNWLNGRIPDSFGYL-----SELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQL 253 (477)
Q Consensus 181 l~~~ip~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 253 (477)
+++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 999999987 8999999999999999977 8878777 8999999999999988889999999999999999998
Q ss_pred CCC--Cchhh--cCCCCCCEeeccCCcCCc--cch-HHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCC
Q 011820 254 EGK--IPKEI--GYLKNITLLDLRNNKFSG--ELT-KSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGL 326 (477)
Q Consensus 254 ~~~--~p~~l--~~l~~L~~L~Ls~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l 326 (477)
.+. ++..+ ..+++|++|++++|++++ .++ ..+.++++|++|++++|.+++..+...+..+++|++|++++|++
T Consensus 186 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 865 34455 889999999999999983 333 44568899999999999999776544566789999999999999
Q ss_pred CCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCee
Q 011820 327 AGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSG 376 (477)
Q Consensus 327 ~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 376 (477)
+ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 266 K-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp S-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred C-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9 7888776 8999999999999966 66 8999999999999999986
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.5e-29 Score=256.67 Aligned_cols=233 Identities=21% Similarity=0.205 Sum_probs=183.2
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
+++++|+|++| .+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 56777777777 57766667777788888888888887766667777788888888888887766566677788888888
Q ss_pred eecccCCCCccccccCCcCCcEEecccCcCCCCCc-hhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 224 LSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIP-KEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 224 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+++|.++...+..+.++++|++|++++|...+.++ ..+.++++|++|++++|+++ .+| .+..+++|++|+|++|.++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 88888776666677788888888888744333443 46778888888888888887 344 4678888999999999888
Q ss_pred CcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCC
Q 011820 303 GDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQF 380 (477)
Q Consensus 303 g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 380 (477)
+..+ ..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+.+..
T Consensus 221 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 221 AIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp EECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCh-hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 4444 4788889999999999999988888899999999999999999977777788899999999999999988764
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4e-29 Score=258.60 Aligned_cols=233 Identities=21% Similarity=0.222 Sum_probs=177.2
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
++|++|+|++| .+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 56777777777 57766667777777777777777777766666777777777777777777766566677777777777
Q ss_pred eecccCCCCccccccCCcCCcEEecccCcCCCCCc-hhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 224 LSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIP-KEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 224 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+++|+++...+..+.++++|++|++++|...+.++ ..+.++++|++|++++|++++. | .+..+++|++|+|++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 77777775555567777778888887743333443 4577788888888888887743 3 4677888888888888887
Q ss_pred CcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCC
Q 011820 303 GDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQF 380 (477)
Q Consensus 303 g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 380 (477)
+..+ ..+..+++|++|++++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+.+..
T Consensus 232 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 232 EIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp EECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ccCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 4444 4678888888888888888888888888889999999999999877777788888999999999999887764
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=254.14 Aligned_cols=280 Identities=18% Similarity=0.142 Sum_probs=233.6
Q ss_pred CCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCC
Q 011820 112 LKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGR 191 (477)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~ 191 (477)
++.....+++++.++ .+|... .++|++|++++| .+++..+..+.++++|++|++++|.+++..|..+.+
T Consensus 30 C~~~~~c~~~~~~l~------~iP~~~----~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 30 CDRNGICKGSSGSLN------SIPSGL----TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp ECTTSEEECCSTTCS------SCCTTC----CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCeEeeCCCCCcc------cccccc----cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 334445677777776 677643 468999999999 798766668999999999999999999877888999
Q ss_pred CCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCcc-ccccCCcCCcEEecccC-cCCCCCchhhcCCCCCCE
Q 011820 192 LSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLP-LSLGGLTSLLKFDLSNN-QLEGKIPKEIGYLKNITL 269 (477)
Q Consensus 192 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~ 269 (477)
+++|++|++++|.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+++..+..+.++++|++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 9999999999999997666669999999999999999985433 47899999999999999 466666788999999999
Q ss_pred eeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhh---cCCCCCCEEecc
Q 011820 270 LDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFM---AELKRLRFLGLS 346 (477)
Q Consensus 270 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l---~~l~~L~~L~Ls 346 (477)
|++++|.+++..|..+.++++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+ ...+.++.++++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 999999999988999999999999999999986 6666556678999999999999987655443 346789999999
Q ss_pred cccCCC----CChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCCC
Q 011820 347 NNKLTG----TISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYPS 404 (477)
Q Consensus 347 ~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~~ 404 (477)
++.+++ .+|..+..+++|++|++++|+++ .+|...+..-...+.+++.+|+..|+++
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999987 47888999999999999999999 7876532111223678899999999863
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.3e-28 Score=238.93 Aligned_cols=230 Identities=21% Similarity=0.205 Sum_probs=139.1
Q ss_pred CEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCC
Q 011820 116 KSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNL 195 (477)
Q Consensus 116 ~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L 195 (477)
++++.+++.+. .+|... .++|++|++++| .+++..+..+.++++|++|++++|.+++..|..+.++++|
T Consensus 14 ~~~~c~~~~l~------~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQ------AVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82 (285)
T ss_dssp CEEECCSSCCS------SCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred eEEEcCcCCcc------cCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCC
Confidence 45666555554 344321 345666666655 4554444455555555555555555554445555555555
Q ss_pred cEEEeeccc-CCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccC
Q 011820 196 KKLVVSGNW-LNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRN 274 (477)
Q Consensus 196 ~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 274 (477)
++|++++|. ++...|..+..+++|++|++ ++|.+++..|..+.++++|++|++++
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHL------------------------DRCGLQELGPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEEC------------------------TTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEEC------------------------CCCcCCEECHhHhhCCcCCCEEECCC
Confidence 555555554 44333444444445555555 44444444444455555555555555
Q ss_pred CcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCC
Q 011820 275 NKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTI 354 (477)
Q Consensus 275 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~i 354 (477)
|++++..+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 139 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 5555444444555666666666666665 344334666777777777777777777777778888888888888888766
Q ss_pred hhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 355 SPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 355 p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
+..+..+++|++|++++|++++.++..
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred HHHcccCcccCEEeccCCCccCCCCcH
Confidence 667888888888888888888777643
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=7.8e-29 Score=240.48 Aligned_cols=242 Identities=19% Similarity=0.200 Sum_probs=172.6
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCC-CC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENG-LS 182 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~-l~ 182 (477)
.+|..+ .++|++|++++|.+. .++...+.. +++|++|++++| .+++..|..+.++++|++|++++|. ++
T Consensus 25 ~ip~~~--~~~l~~L~l~~n~i~------~~~~~~~~~-~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 25 AVPVGI--PAASQRIFLHGNRIS------HVPAASFRA-CRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp SCCTTC--CTTCSEEECTTSCCC------EECTTTTTT-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCCcCC--CCCceEEEeeCCcCC------ccCHHHccc-CCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 456544 469999999999987 466554544 589999999999 7998888999999999999999997 77
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhc
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIG 262 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 262 (477)
...|..+.++++|++|++++|.+++..|..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 66688899999999999999999988888888889999999988888866666677777777777777777644444555
Q ss_pred CCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCE
Q 011820 263 YLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRF 342 (477)
Q Consensus 263 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~ 342 (477)
.+++|++|++++|.+++..|..+ ..+++|++|++++|++++..+..+..+++|+.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~-------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAF-------------------------RDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTT-------------------------TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred CccccCEEECCCCcccccCHhHc-------------------------cCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 66666666666665554444444 44455555555555555544555666666666
Q ss_pred EecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 343 LGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 343 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
|++++|.+....+.. .-...++.+..+.+.+.|..|..
T Consensus 230 L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 230 LRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp EECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred EeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 666666665433211 00122344446667777777743
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=4.5e-28 Score=259.93 Aligned_cols=268 Identities=19% Similarity=0.213 Sum_probs=206.4
Q ss_pred ccc-hhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCC
Q 011820 104 EFR-EQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 104 ~i~-~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
.++ ..+.++++|++|+|++|.+. .+|...|.+ +++|++|++++| .+++..+..|+++++|++|++++|.++
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N~l~------~l~~~~f~~-L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGNPIQ------SLALGAFSG-LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCC------EECGGGGTT-CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CcChhHhcCCCCCCEEEccCCcCC------CCCHHHhcC-CCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccc
Confidence 454 46889999999999999987 677766665 599999999999 799776677999999999999999997
Q ss_pred C-ccchhcCCCCCCcEEEeecccCCCCCcccccC----------------------------------------------
Q 011820 183 G-ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGY---------------------------------------------- 215 (477)
Q Consensus 183 ~-~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------------------------- 215 (477)
+ .+|..++++++|++|++++|++++..|..+..
T Consensus 162 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~ 241 (635)
T 4g8a_A 162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 241 (635)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHH
T ss_pred cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccccccccc
Confidence 5 56888999999999999999886543322211
Q ss_pred --------------------------------------------------------------------------------
Q 011820 216 -------------------------------------------------------------------------------- 215 (477)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (477)
T Consensus 242 ~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 321 (635)
T 4g8a_A 242 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV 321 (635)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC
T ss_pred chhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc
Confidence
Q ss_pred -----CccccEeeeecccCCCCcc-------------------ccccCCcCCcE--------------------------
Q 011820 216 -----LSELLILDLSRNSLSGPLP-------------------LSLGGLTSLLK-------------------------- 245 (477)
Q Consensus 216 -----l~~L~~L~L~~N~l~~~~p-------------------~~l~~l~~L~~-------------------------- 245 (477)
..+|+.|++.+|.+.+..+ .....+++|+.
T Consensus 322 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 401 (635)
T 4g8a_A 322 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKY 401 (635)
T ss_dssp GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCE
T ss_pred cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhh
Confidence 0122233333332211100 00112233333
Q ss_pred ------------------------------------------------EecccCcCCCCCchhhcCCCCCCEeeccCCcC
Q 011820 246 ------------------------------------------------FDLSNNQLEGKIPKEIGYLKNITLLDLRNNKF 277 (477)
Q Consensus 246 ------------------------------------------------L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 277 (477)
++++.|.+.+..+..+..++.|++|++++|.+
T Consensus 402 L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~ 481 (635)
T 4g8a_A 402 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481 (635)
T ss_dssp EECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred hhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccc
Confidence 33344444444455566778899999999975
Q ss_pred C-ccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChh
Q 011820 278 S-GELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISP 356 (477)
Q Consensus 278 ~-~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 356 (477)
. +..|..+..+++|++|+|++|++++..| ..|.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|.
T Consensus 482 ~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred ccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 4 4577889999999999999999995555 4789999999999999999998899999999999999999999999999
Q ss_pred hcCCC-CCCCEEEeeCCcCeeecCC
Q 011820 357 KLATM-PCVSALYLNGNNLSGELQF 380 (477)
Q Consensus 357 ~l~~l-~~L~~L~Ls~N~l~g~ip~ 380 (477)
.+..+ ++|++|+|++|+|+|.+..
T Consensus 561 ~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 561 ELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred HHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99988 6899999999999999874
No 49
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2e-27 Score=236.84 Aligned_cols=245 Identities=24% Similarity=0.323 Sum_probs=133.4
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchh
Q 011820 109 LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTN 188 (477)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~ 188 (477)
+..+++|++|++++|.+.. ++. +.. +++|++|++++| .+++. +. +.++++|++|++++|.....++ .
T Consensus 84 ~~~l~~L~~L~L~~n~i~~------~~~--~~~-l~~L~~L~l~~n-~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~ 150 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITD------ISA--LQN-LTNLRELYLNED-NISDI-SP-LANLTKMYSLNLGANHNLSDLS-P 150 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC------CGG--GTT-CTTCSEEECTTS-CCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-G
T ss_pred hhcCCcCCEEEccCCcccC------chH--HcC-CCcCCEEECcCC-cccCc-hh-hccCCceeEEECCCCCCccccc-c
Confidence 4555555555555555442 221 222 355555555555 34432 22 5555555555555554433332 2
Q ss_pred cCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCC
Q 011820 189 LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNIT 268 (477)
Q Consensus 189 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 268 (477)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 224 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence 5555555555555555553322 4555556666666655553222 5555566666666665553322 55566666
Q ss_pred EeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccc
Q 011820 269 LLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNN 348 (477)
Q Consensus 269 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N 348 (477)
+|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|++++|++++. ..+..+++|+.|++++|
T Consensus 225 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred EEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence 66666666654333 5566666666666666652 32 345566666666666666542 23556666666666666
Q ss_pred cCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 349 KLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 349 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
++++..|..+..+++|++|++++|++++..|
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC
Confidence 6666666666666666666666666665544
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=9.1e-28 Score=248.67 Aligned_cols=256 Identities=20% Similarity=0.145 Sum_probs=204.4
Q ss_pred EEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCch
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIP 162 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip 162 (477)
+++.|++.. +.+. .+| .+..+++|++|++++|.+.+ +| +.. +++|++|++++| .+++. |
T Consensus 43 ~L~~L~Ls~---n~l~-----~~~-~l~~l~~L~~L~Ls~n~l~~------~~---~~~-l~~L~~L~Ls~N-~l~~~-~ 101 (457)
T 3bz5_A 43 TLTSLDCHN---SSIT-----DMT-GIEKLTGLTKLICTSNNITT------LD---LSQ-NTNLTYLACDSN-KLTNL-D 101 (457)
T ss_dssp TCCEEECCS---SCCC-----CCT-TGGGCTTCSEEECCSSCCSC------CC---CTT-CTTCSEEECCSS-CCSCC-C
T ss_pred CCCEEEccC---CCcc-----cCh-hhcccCCCCEEEccCCcCCe------Ec---ccc-CCCCCEEECcCC-CCcee-e
Confidence 466777743 3332 244 68889999999999998874 44 222 589999999999 68864 3
Q ss_pred hhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcC
Q 011820 163 TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTS 242 (477)
Q Consensus 163 ~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 242 (477)
++++++|++|++++|.+++ +| ++++++|++|++++|.+++. + ++.+++|++|++++|+..+.+ .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCc
Confidence 8899999999999999986 54 88999999999999999874 3 788899999999999766666 4778899
Q ss_pred CcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEcc
Q 011820 243 LLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLS 322 (477)
Q Consensus 243 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls 322 (477)
|++|++++|.+++ +| +..+++|+.|++++|++++. .+..+++|++|++++|++++ +| +..+++|++|+++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCS 241 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEee
Confidence 9999999999986 55 78889999999999999865 37888999999999999985 55 5678899999999
Q ss_pred CCCCCCCchhhhcCCC-------CCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 323 NTGLAGEVPEFMAELK-------RLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 323 ~n~l~~~ip~~l~~l~-------~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
+|++++..+..+..++ +|+.|++++|++.|.+| ++.+++|+.|++++|++.|.+|..
T Consensus 242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC
Confidence 9999876555554444 55667777777777777 467888999999999988888853
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=5.5e-29 Score=264.33 Aligned_cols=264 Identities=21% Similarity=0.222 Sum_probs=231.2
Q ss_pred cccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCC
Q 011820 103 VEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 103 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
+.++..+..+++|++|++++|.+. .+|... .. + +|++|++++| .+. .+|. ..+++|++|++++|.+.
T Consensus 272 ~~~~~~~~~l~~L~~L~l~~~~l~------~l~~~~-~~-~-~L~~L~l~~n-~~~-~l~~--~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 272 DDIIDLFNCLTNVSSFSLVSVTIE------RVKDFS-YN-F-GWQHLELVNC-KFG-QFPT--LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp SCSTTTTGGGTTCSEEEEESCEEC------SCCBCC-SC-C-CCSEEEEESC-BCS-SCCB--CBCSSCCEEEEESCBSC
T ss_pred hhchhhhcCcCcccEEEecCccch------hhhhhh-cc-C-CccEEeeccC-ccc-ccCc--ccccccCEEeCcCCccc
Confidence 456777888999999999999876 466542 22 4 9999999999 677 6665 57899999999999998
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCC--cccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCc-h
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRI--PDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIP-K 259 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~ 259 (477)
+..+. ..+++|++|++++|.+++.. |..+..+++|++|++++|.+++. +..+..+++|++|++++|.+.+..+ .
T Consensus 339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchh
Confidence 76665 78999999999999998654 67888999999999999999854 4459999999999999999987766 5
Q ss_pred hhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC-CcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCC
Q 011820 260 EIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG-GDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELK 338 (477)
Q Consensus 260 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~ 338 (477)
.+..+++|++|++++|.+++..|..+.++++|++|++++|.+. +.+|. .+..+++|++|++++|++++..|..+..++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCccccCChhhhhccc
Confidence 6889999999999999999989999999999999999999987 46774 688899999999999999988899999999
Q ss_pred CCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChh
Q 011820 339 RLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEW 383 (477)
Q Consensus 339 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 383 (477)
+|++|++++|++++..|..+.++++|++|++++|+++|.+|...+
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 999999999999988888899999999999999999999997543
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.7e-28 Score=252.33 Aligned_cols=251 Identities=20% Similarity=0.178 Sum_probs=213.7
Q ss_pred ccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeee
Q 011820 146 LESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLS 225 (477)
Q Consensus 146 L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 225 (477)
.+.++.++. .++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~-~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRR-GLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSS-CCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCC-CcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 344555555 455 4565443 689999999999998888999999999999999999998888999999999999999
Q ss_pred cccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccch-HHhhcCCCCCEEEcccCCCCCc
Q 011820 226 RNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELT-KSLQEMYSLEEMVFSNNPIGGD 304 (477)
Q Consensus 226 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ 304 (477)
+|++++..+..+..+++|++|++++|.++...+..+.++++|++|++++|+..+.++ ..+.++++|++|++++|.++ .
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 999997777789999999999999999997666789999999999999954444444 46889999999999999998 5
Q ss_pred CChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhh
Q 011820 305 LKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWF 384 (477)
Q Consensus 305 i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 384 (477)
+| .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|++|+|++|++++..+.....
T Consensus 211 ~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 MP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp CC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred cc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 56 4678999999999999999988999999999999999999999988999999999999999999999544432221
Q ss_pred hccccCcccccCCCCCCCCC
Q 011820 385 YGKMGRRFGAWNNPNLCYPS 404 (477)
Q Consensus 385 ~~~~~~~~~~~~N~~lc~~~ 404 (477)
... .+.+++.+||+.|++.
T Consensus 289 l~~-L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 289 LRY-LVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTT-CCEEECCSSCEECSTT
T ss_pred ccC-CCEEEccCCCcCCCCC
Confidence 222 3578889999999874
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=250.93 Aligned_cols=250 Identities=20% Similarity=0.158 Sum_probs=213.1
Q ss_pred cEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeec
Q 011820 147 ESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSR 226 (477)
Q Consensus 147 ~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 226 (477)
+.++.++. .++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 46 ~~v~c~~~-~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRK-NLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSC-CCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCC-CcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34455544 455 5665554 6899999999999987788999999999999999999988888999999999999999
Q ss_pred ccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccch-HHhhcCCCCCEEEcccCCCCCcC
Q 011820 227 NSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELT-KSLQEMYSLEEMVFSNNPIGGDL 305 (477)
Q Consensus 227 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~i 305 (477)
|++++..+..+..+++|++|++++|.++...+..+.++++|++|++++|+..+.++ ..+.++++|++|++++|.++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 99997777789999999999999999997777789999999999999965444444 47899999999999999998 67
Q ss_pred ChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhh
Q 011820 306 KSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFY 385 (477)
Q Consensus 306 ~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 385 (477)
| .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..+......
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 6 46789999999999999998889999999999999999999999889999999999999999999995443222111
Q ss_pred ccccCcccccCCCCCCCCC
Q 011820 386 GKMGRRFGAWNNPNLCYPS 404 (477)
Q Consensus 386 ~~~~~~~~~~~N~~lc~~~ 404 (477)
. ..+.+++.+||+.|++.
T Consensus 279 ~-~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 279 H-HLERIHLHHNPWNCNCD 296 (440)
T ss_dssp T-TCCEEECCSSCEECSST
T ss_pred c-CCCEEEcCCCCccCCCC
Confidence 2 23578889999999873
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=3.6e-27 Score=244.20 Aligned_cols=257 Identities=22% Similarity=0.185 Sum_probs=214.6
Q ss_pred cchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCc
Q 011820 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGE 184 (477)
Q Consensus 105 i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ 184 (477)
.+..+.++++|++|++++|.+.+ +| . +.. +++|++|++++| .+++. | ++++++|++|++++|.+++.
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~------~~-~-l~~-l~~L~~L~Ls~n-~l~~~-~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD------MT-G-IEK-LTGLTKLICTSN-NITTL-D--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC------CT-T-GGG-CTTCSEEECCSS-CCSCC-C--CTTCTTCSEEECCSSCCSCC
T ss_pred cccChhHcCCCCEEEccCCCccc------Ch-h-hcc-cCCCCEEEccCC-cCCeE-c--cccCCCCCEEECcCCCCcee
Confidence 34567789999999999999874 45 2 333 699999999999 68874 4 89999999999999999964
Q ss_pred cchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCC
Q 011820 185 LPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYL 264 (477)
Q Consensus 185 ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 264 (477)
| ++++++|++|++++|.+++ +| +..+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+
T Consensus 101 -~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 101 -D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred -e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccC
Confidence 4 8999999999999999997 44 88999999999999999974 3889999999999999766666 47889
Q ss_pred CCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEe
Q 011820 265 KNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLG 344 (477)
Q Consensus 265 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ 344 (477)
++|++|++++|++++ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|+
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 999999999999997 44 88999999999999999853 36788999999999999997 66 88999999999
Q ss_pred cccccCCCCChhhcCCCC-------CCCEEEeeCCcCeeecCCChhhhccccCcccccCCC
Q 011820 345 LSNNKLTGTISPKLATMP-------CVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNP 398 (477)
Q Consensus 345 Ls~N~l~g~ip~~l~~l~-------~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~ 398 (477)
+++|++++..+..+.++. +|+.|++++|++.|.+|... ... .+.+++++|+
T Consensus 240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~--l~~-L~~L~Ls~n~ 297 (457)
T 3bz5_A 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEG--CRK-IKELDVTHNT 297 (457)
T ss_dssp CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT--CTT-CCCCCCTTCT
T ss_pred eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccc--ccc-CCEEECCCCc
Confidence 999999987655555554 56778888888888888532 122 2456666665
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.9e-26 Score=239.49 Aligned_cols=241 Identities=27% Similarity=0.326 Sum_probs=130.0
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchh
Q 011820 109 LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTN 188 (477)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~ 188 (477)
+.++++|++|++++|.+.+ ++. +.. +++|++|++++| .+++. +. +.++++|++|++++|.+++ ++ .
T Consensus 86 ~~~l~~L~~L~l~~n~l~~------~~~--~~~-l~~L~~L~L~~n-~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~ 151 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIAD------ITP--LAN-LTNLTGLTLFNN-QITDI-DP-LKNLTNLNRLELSSNTISD-IS-A 151 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC------CGG--GTT-CTTCCEEECCSS-CCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-G
T ss_pred hhccccCCEEECCCCcccc------Chh--hcC-CCCCCEEECCCC-CCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-h
Confidence 4455555555555554442 111 112 355555555555 34432 22 4555555555555555542 22 2
Q ss_pred cCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCC
Q 011820 189 LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNIT 268 (477)
Q Consensus 189 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 268 (477)
+.++++|++|+++ |.+.+.. .+.++++|++|++++|.+++. ..+..+++|++|++++|.+++..| ++.+++|+
T Consensus 152 ~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 224 (466)
T 1o6v_A 152 LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLD 224 (466)
T ss_dssp GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCC
Confidence 3444444444443 2222211 255566666666666666532 235566666666666666664433 45566666
Q ss_pred EeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccc
Q 011820 269 LLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNN 348 (477)
Q Consensus 269 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N 348 (477)
+|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 225 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 297 (466)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred EEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence 666666666542 245566666666666666653322 4556666666666666664333 566666666666666
Q ss_pred cCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 349 KLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 349 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
++++..| +..+++|++|++++|++++..|
T Consensus 298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred cccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 6664333 5566666666666666666554
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=4.9e-27 Score=234.00 Aligned_cols=243 Identities=22% Similarity=0.301 Sum_probs=208.5
Q ss_pred hhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccc
Q 011820 107 EQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELP 186 (477)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip 186 (477)
+.+.++++|++|++++|.+.. ++. +.. +++|++|++++|. ....++ .+..+++|++|++++|.+.+..+
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~------~~~--~~~-l~~L~~L~l~~n~-~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISD------ISP--LAN-LTKMYSLNLGANH-NLSDLS-PLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCC------CGG--GTT-CTTCCEEECTTCT-TCCCCG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred hHHcCCCcCCEEECcCCcccC------chh--hcc-CCceeEEECCCCC-Cccccc-chhhCCCCcEEEecCCCcCCchh
Confidence 468899999999999998873 443 233 6899999999994 444444 48999999999999999985443
Q ss_pred hhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCC
Q 011820 187 TNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKN 266 (477)
Q Consensus 187 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 266 (477)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. +. +..+++
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~ 244 (347)
T 4fmz_A 173 --IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQ 244 (347)
T ss_dssp --GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTT
T ss_pred --hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCC
Confidence 8899999999999999986533 8899999999999999986544 88999999999999999854 43 889999
Q ss_pred CCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecc
Q 011820 267 ITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLS 346 (477)
Q Consensus 267 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls 346 (477)
|++|++++|.+++. +.+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 245 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 99999999999864 468899999999999999984 44 47789999999999999999999999999999999999
Q ss_pred cccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 347 NNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 347 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+|++++..| +..+++|++|++++|+++
T Consensus 320 ~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 320 QNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCccccccC--hhhhhccceeehhhhccc
Confidence 999997666 888999999999999985
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=5.9e-27 Score=243.27 Aligned_cols=282 Identities=27% Similarity=0.372 Sum_probs=203.3
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCch--------------------hhhcCC
Q 011820 109 LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIP--------------------TSLGHL 168 (477)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip--------------------~~l~~l 168 (477)
+.++++|++|++++|.+.+ ++. +.. +++|++|++++| .+++ ++ ..+.++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~------~~~--~~~-l~~L~~L~l~~n-~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l 176 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITD------IDP--LKN-LTNLNRLELSSN-TISD-ISALSGLTSLQQLSFGNQVTDLKPLANL 176 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC------CGG--GTT-CTTCSEEEEEEE-EECC-CGGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred hcCCCCCCEEECCCCCCCC------ChH--HcC-CCCCCEEECCCC-ccCC-ChhhccCCcccEeecCCcccCchhhccC
Confidence 7888999999999888763 332 222 577777777777 4553 22 125666
Q ss_pred CCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEec
Q 011820 169 MKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDL 248 (477)
Q Consensus 169 ~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 248 (477)
++|++|++++|.+++ ++ .+.++++|++|++++|.+++..| +..+++|++|++++|++++. ..+..+++|++|++
T Consensus 177 ~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 777777777777764 32 36777778888888877776554 56677888888888877753 35777888888888
Q ss_pred ccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCC
Q 011820 249 SNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAG 328 (477)
Q Consensus 249 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~ 328 (477)
++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++. +..+++|++|++++|++++
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG--GGGCTTCSEEECCSSCCSC
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh--hcCCCCCCEEECcCCcCCC
Confidence 8888875544 7788888888888888886544 7788888888888888874 332 5678899999999999887
Q ss_pred CchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCCCCCCCC
Q 011820 329 EVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCYPSGLMS 408 (477)
Q Consensus 329 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~~~~~~~ 408 (477)
..| +..+++|+.|++++|++++. ..+..+++|++|++++|++++..|.. .... .+.+++.+|+....+.....
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~--~l~~-L~~L~l~~n~~~~~p~~~~~ 396 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA--NLTR-ITQLGLNDQAWTNAPVNYKA 396 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGT--TCTT-CCEEECCCEEEECCCBCCCS
T ss_pred chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhh--cCCC-CCEEeccCCcccCCchhhcc
Confidence 665 67889999999999998865 46888999999999999999888722 2222 24567777776655444334
Q ss_pred ccCCCCCCCCCcc
Q 011820 409 TSHIPLGVKPCQQ 421 (477)
Q Consensus 409 ~~~~p~~~~~c~~ 421 (477)
...+|..++++..
T Consensus 397 ~~~ip~~~~~~~~ 409 (466)
T 1o6v_A 397 NVSIPNTVKNVTG 409 (466)
T ss_dssp EEEEECCCBCTTS
T ss_pred cceecccccccCC
Confidence 4456655555543
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.1e-29 Score=243.79 Aligned_cols=245 Identities=21% Similarity=0.188 Sum_probs=206.8
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCC-CCccchhcC-------CCCCCcEEEeecccCCCCCcccc-
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGL-SGELPTNLG-------RLSNLKKLVVSGNWLNGRIPDSF- 213 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l-~~~ip~~l~-------~l~~L~~L~L~~n~l~~~~p~~l- 213 (477)
.++|++|++++| .+ .+|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n-~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVD-TE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCC-TT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccc-cc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 468999999999 57 788877655 99999999999 456777766 79999999999999999999876
Q ss_pred -cCCccccEeeeecccCCCCccccccCC-----cCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCcc--chHHh
Q 011820 214 -GYLSELLILDLSRNSLSGPLPLSLGGL-----TSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGE--LTKSL 285 (477)
Q Consensus 214 -~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l 285 (477)
..+++|++|++++|++++. |..+..+ ++|++|++++|.+++..|..++++++|++|++++|++.+. ++..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8999999999999999987 8888877 9999999999999988889999999999999999999876 34455
Q ss_pred --hcCCCCCEEEcccCCCCC--cCChhhhcCCCCccEEEccCCCCCCCch-hhhcCCCCCCEEecccccCCCCChhhcCC
Q 011820 286 --QEMYSLEEMVFSNNPIGG--DLKSLEWKNLQNLVILDLSNTGLAGEVP-EFMAELKRLRFLGLSNNKLTGTISPKLAT 360 (477)
Q Consensus 286 --~~l~~L~~L~Ls~N~l~g--~i~~~~~~~l~~L~~L~Ls~n~l~~~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 360 (477)
.++++|++|++++|.+++ .++...+..+++|++|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 889999999999999983 3333345678999999999999998775 45667899999999999999 8888876
Q ss_pred CCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCC
Q 011820 361 MPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPN 399 (477)
Q Consensus 361 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~ 399 (477)
++|++|||++|++++. |. ......+ +.+++.+|+.
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L-~~L~L~~N~l 308 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQV-GNLSLKGNPF 308 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEE-EEEECTTCTT
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCC-CEEeccCCCC
Confidence 8999999999999976 54 2222222 5667777764
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=8.3e-27 Score=225.07 Aligned_cols=217 Identities=22% Similarity=0.250 Sum_probs=134.8
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
++|++|++++| .+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45677777666 56655555666666677777766666654444566666666666666666655555566666666666
Q ss_pred eecccCCCCccccccCCcCCcEEecccCcCCC-CCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 224 LSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEG-KIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 224 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+++|.+++..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..+..+..+++|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------- 175 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM----------- 175 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC-----------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc-----------
Confidence 66666655444455555555555555555553 235555555555555555555544333333222222
Q ss_pred CcCChhhhcCCCCcc-EEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 303 GDLKSLEWKNLQNLV-ILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 303 g~i~~~~~~~l~~L~-~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
+.+. +|++++|.+++..+..+ ...+|+.|++++|++++..+..+..+++|++|++++|+++|.+|.-
T Consensus 176 -----------~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 176 -----------PLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp -----------TTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred -----------cccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 2222 67777777774444333 3457888999999988666666788999999999999999998855
Q ss_pred hhh
Q 011820 382 EWF 384 (477)
Q Consensus 382 ~~~ 384 (477)
.++
T Consensus 244 ~~l 246 (276)
T 2z62_A 244 DYL 246 (276)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.5e-28 Score=250.55 Aligned_cols=220 Identities=24% Similarity=0.221 Sum_probs=169.3
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
++|++|+|++| .+++..|..|.++++|++|+|++|.+++..| +..+++|++|+|++|.+++.. ..++|++|+
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 46778888877 6777777778888888888888888876555 777888888888888776432 237788888
Q ss_pred eecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhh-cCCCCCEEEcccCCCC
Q 011820 224 LSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQ-EMYSLEEMVFSNNPIG 302 (477)
Q Consensus 224 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~ 302 (477)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888888765543 357788888888888877777788888888888888888887777765 6888888888888887
Q ss_pred CcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCe-eecC
Q 011820 303 GDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS-GELQ 379 (477)
Q Consensus 303 g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip 379 (477)
+. +. ...+++|++|+|++|.+++. |..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ +.+|
T Consensus 183 ~~-~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 183 DV-KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp EE-EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cc-cc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 43 32 33578888888888888854 4447788888899999988884 7777888888888999988887 4443
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8.7e-28 Score=236.94 Aligned_cols=217 Identities=24% Similarity=0.226 Sum_probs=151.4
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+++|++|++++| .+++..|..+.++++|++|++++|.+++..| +..+++|++|++++|.+++. + ..++|++|
T Consensus 33 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEE
T ss_pred CCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEE
Confidence 356777777777 5776666677777777777777777765443 67777777777777776632 2 23677777
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHh-hcCCCCCEEEcccCCC
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSL-QEMYSLEEMVFSNNPI 301 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l 301 (477)
++++|++++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 7777777654433 25667777777777776666667777777777777777776666555 3677777777777777
Q ss_pred CCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 302 GGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 302 ~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+ .++. ...+++|++|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 182 ~-~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 182 Y-DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp C-EEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred c-cccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 6 3332 2346777888888887774 4444777777888888888777 56777777777888888888777
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-28 Score=240.57 Aligned_cols=249 Identities=18% Similarity=0.153 Sum_probs=212.1
Q ss_pred hccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccch
Q 011820 108 QLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPT 187 (477)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~ 187 (477)
....+++|++|++++|.+. .++...+.. +++|++|++++| .+++..| +..+++|++|++++|.+++ +|
T Consensus 29 ~~~~~~~L~~L~L~~n~l~------~~~~~~~~~-l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~- 96 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLS------QISAADLAP-FTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQE-LL- 96 (317)
T ss_dssp HHTTGGGCSEEECTTSCCC------CCCHHHHTT-CTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSSEEEE-EE-
T ss_pred HhccCCCCCEEECcCCccC------cCCHHHhhC-CCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCCcccc-cc-
Confidence 3456779999999999987 355444544 599999999999 6887655 8999999999999999984 33
Q ss_pred hcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhc-CCCC
Q 011820 188 NLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIG-YLKN 266 (477)
Q Consensus 188 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~ 266 (477)
..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+. .+++
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 348999999999999876554 367899999999999988888999999999999999999987777764 7899
Q ss_pred CCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecc
Q 011820 267 ITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLS 346 (477)
Q Consensus 267 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls 346 (477)
|++|++++|.+++. + ....+++|++|++++|.++ .++. .+..+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus 171 L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 171 LEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred CCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 99999999999865 3 2345899999999999998 5655 4788999999999999999 678889999999999999
Q ss_pred cccCC-CCChhhcCCCCCCCEEEeeCC-cCeeecC
Q 011820 347 NNKLT-GTISPKLATMPCVSALYLNGN-NLSGELQ 379 (477)
Q Consensus 347 ~N~l~-g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip 379 (477)
+|+++ +.+|.++..+++|+.+++++| .++|..|
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 99999 788999999999999999954 5676555
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-27 Score=248.77 Aligned_cols=244 Identities=19% Similarity=0.173 Sum_probs=209.2
Q ss_pred ccchhccCCC----CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccC
Q 011820 104 EFREQLFELK----HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLEN 179 (477)
Q Consensus 104 ~i~~~l~~l~----~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n 179 (477)
.+|..+..+. +|++|+|++|.+.+ ++...+.. +++|++|+|++| .+++.+| +..+++|++|+|++|
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~------~~~~~~~~-l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQ------ISAADLAP-FTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN 90 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCC------CCGGGGTT-CTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSS
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCC------CCHHHHhC-CCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCC
Confidence 4555555544 89999999999874 44444444 699999999999 6987766 999999999999999
Q ss_pred CCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCch
Q 011820 180 GLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPK 259 (477)
Q Consensus 180 ~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 259 (477)
.+++ +|. .++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|.
T Consensus 91 ~l~~-l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 91 YVQE-LLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp EEEE-EEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred cCCC-CCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 9984 332 38999999999999976654 468899999999999998899999999999999999999998888
Q ss_pred hhc-CCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCC
Q 011820 260 EIG-YLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELK 338 (477)
Q Consensus 260 ~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~ 338 (477)
.+. .+++|++|+|++|.+++..+ ...+++|++|+|++|.+++ +|. .+..+++|+.|+|++|.+++ +|..+..++
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQ 237 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence 886 79999999999999996633 4469999999999999995 554 47889999999999999994 788899999
Q ss_pred CCCEEecccccCC-CCChhhcCCCCCCCEEEee
Q 011820 339 RLRFLGLSNNKLT-GTISPKLATMPCVSALYLN 370 (477)
Q Consensus 339 ~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls 370 (477)
+|+.|++++|.+. +.+|.++..++.|+.++++
T Consensus 238 ~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999998 7888889988888888776
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1e-25 Score=233.15 Aligned_cols=231 Identities=27% Similarity=0.283 Sum_probs=125.8
Q ss_pred cchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCc
Q 011820 105 FREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGE 184 (477)
Q Consensus 105 i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ 184 (477)
+| .+.++++|++|++++|.+. .+|.. .++|++|++++| .+++ +| .++++++|++|++++|.+++
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~------~lp~~-----~~~L~~L~L~~n-~l~~-l~-~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLK------KLPDL-----PPSLEFIAAGNN-QLEE-LP-ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCS------CCCCC-----CTTCCEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSS-
T ss_pred Cc-ccCCCCCCCEEECCCCcCc------ccCCC-----cccccEEECcCC-cCCc-Cc-cccCCCCCCEEECCCCcCCc-
Confidence 44 3556666666666666554 23321 245666666666 4554 44 45666666666666666653
Q ss_pred cchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCC
Q 011820 185 LPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYL 264 (477)
Q Consensus 185 ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 264 (477)
+|... ++|++|++++|.++ .+|. +..+++|++|++++|++++ +|.. +++|++|++++|.+++ +|.. +
T Consensus 210 l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 210 LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---C
T ss_pred CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---c
Confidence 33321 35666666666665 4453 5666666666666666653 3332 2556666666666653 3332 3
Q ss_pred CCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEe
Q 011820 265 KNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLG 344 (477)
Q Consensus 265 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ 344 (477)
++|++|++++|++++. |. -.++|++|++++|.+++ ++. ..++|++|++++|++++ +|.. +++|++|+
T Consensus 277 ~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLI 343 (454)
T ss_dssp TTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred CcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence 5566666666666541 10 01345555555554442 211 11366666666666664 4432 35666666
Q ss_pred cccccCCCCChhhcCCCCCCCEEEeeCCcCee--ecCCC
Q 011820 345 LSNNKLTGTISPKLATMPCVSALYLNGNNLSG--ELQFS 381 (477)
Q Consensus 345 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~ 381 (477)
+++|+++ .+|. .+++|++|++++|++++ .+|..
T Consensus 344 L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred CCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 6666666 3554 35566666666666666 55543
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.2e-25 Score=217.01 Aligned_cols=220 Identities=21% Similarity=0.215 Sum_probs=172.2
Q ss_pred cccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCC
Q 011820 103 VEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLS 182 (477)
Q Consensus 103 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~ 182 (477)
.++|..+. ++|++|++++|.+. .++...+.. +++|++|++++| .+++..+..+.++++|++|++++|.++
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~------~~~~~~~~~-l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLR------HLGSYSFFS-FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCC------EECTTTTTT-CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cccCCCCC--CCccEEECCCCccc------ccCHhHhcc-ccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccC
Confidence 35666553 57999999999987 455444444 589999999999 788777778999999999999999999
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCC-ccccccCCcCCcEEecccCcCCCCCchhh
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGP-LPLSLGGLTSLLKFDLSNNQLEGKIPKEI 261 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 261 (477)
+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 77778899999999999999999987777899999999999999999874 69999999999999999999997766666
Q ss_pred cCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCC
Q 011820 262 GYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLR 341 (477)
Q Consensus 262 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~ 341 (477)
..+++|+.+.+ +|++++|.++ .++...+. ..+|++|++++|++++..+..+..+++|+
T Consensus 170 ~~l~~L~~l~l--------------------~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 170 RVLHQMPLLNL--------------------SLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp HHHHTCTTCCE--------------------EEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred hhhhhccccce--------------------eeecCCCccc-ccCccccC-CCcccEEECCCCceeecCHhHhccccccc
Confidence 66655552211 3455555544 22222222 34677788888887766555667788888
Q ss_pred EEecccccCCCCC
Q 011820 342 FLGLSNNKLTGTI 354 (477)
Q Consensus 342 ~L~Ls~N~l~g~i 354 (477)
.|++++|.+++..
T Consensus 228 ~L~l~~N~~~c~c 240 (276)
T 2z62_A 228 KIWLHTNPWDCSC 240 (276)
T ss_dssp EEECCSSCBCCCT
T ss_pred EEEccCCcccccC
Confidence 8888888887543
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3.9e-25 Score=212.87 Aligned_cols=209 Identities=22% Similarity=0.226 Sum_probs=138.6
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
.+.+.++++++ .++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.++...+..|.++++|++|+
T Consensus 16 ~~~~~l~~~~~-~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTS-CCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCC-CCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 34667777776 566 4555443 4566667766666644444566666666666666666544444445555555555
Q ss_pred eecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCC
Q 011820 224 LSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGG 303 (477)
Q Consensus 224 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 303 (477)
+++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 92 l~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 146 (270)
T 2o6q_A 92 VTDNKLQALPI------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ- 146 (270)
T ss_dssp CCSSCCCCCCT------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCCcCCcCCH------------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-
Confidence 55555554333 33444555555555555555544455556666666666666665
Q ss_pred cCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 304 DLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 304 ~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
.++...+..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++.+.++.-
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 344445667788888888888888766667888899999999999999766667888999999999999999887643
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.1e-25 Score=212.71 Aligned_cols=201 Identities=26% Similarity=0.281 Sum_probs=138.2
Q ss_pred CEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCC
Q 011820 116 KSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNL 195 (477)
Q Consensus 116 ~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L 195 (477)
++++++++.+. .+|... .++|++|++++| .+++..+..+.++++|++|++++|.++...+..+.++++|
T Consensus 19 ~~l~~~~~~l~------~ip~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 19 NSVDCSSKKLT------AIPSNI----PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TEEECTTSCCS------SCCSCC----CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CEEEccCCCCC------ccCCCC----CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 45666666665 455432 357888999888 6886666678899999999999999985444556889999
Q ss_pred cEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCC
Q 011820 196 KKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNN 275 (477)
Q Consensus 196 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 275 (477)
++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 99999999998777777888888999999888888766666777777777777777776544444566666666666666
Q ss_pred cCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCC
Q 011820 276 KFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTG 352 (477)
Q Consensus 276 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 352 (477)
.+++..+..+.+ +++|++|++++|++++..+..+..+++|+.|+|++|.+..
T Consensus 168 ~l~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 168 QLKRVPEGAFDK-------------------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSCCCTTTTTT-------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCcEeChhHhcc-------------------------CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 655443333444 4445555555555543333445555566666666665543
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=8.2e-25 Score=226.28 Aligned_cols=244 Identities=28% Similarity=0.291 Sum_probs=153.1
Q ss_pred CCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCC
Q 011820 112 LKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGR 191 (477)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~ 191 (477)
+++|++|++++|.+.+ +|. ..++|++|++++| .+++ +| .++++++|++|++++|++++ +|..+
T Consensus 110 ~~~L~~L~l~~n~l~~------l~~-----~~~~L~~L~L~~n-~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~-- 172 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKA------LSD-----LPPLLEYLGVSNN-QLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP-- 172 (454)
T ss_dssp CTTCCEEECCSSCCSC------CCS-----CCTTCCEEECCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--
T ss_pred cCCCcEEECCCCccCc------ccC-----CCCCCCEEECcCC-CCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--
Confidence 3677778887777653 332 1257888888887 5775 66 47788888888888888774 55433
Q ss_pred CCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEee
Q 011820 192 LSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLD 271 (477)
Q Consensus 192 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 271 (477)
++|++|++++|.+++ +| .+.++++|++|++++|++++ +|... ++|++|++++|.++ .+|. +..+++|++|+
T Consensus 173 -~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~ 243 (454)
T 1jl5_A 173 -PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIY 243 (454)
T ss_dssp -TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEE
T ss_pred -ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEE
Confidence 477888888887775 45 57777888888888887774 44322 46777777777776 5663 67777777777
Q ss_pred ccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCC--Cchhhh-------------cC
Q 011820 272 LRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAG--EVPEFM-------------AE 336 (477)
Q Consensus 272 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~--~ip~~l-------------~~ 336 (477)
+++|++++ +|. ..++|++|++++|.+++ +|. .+++|++|++++|++++ .+|..+ ..
T Consensus 244 l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~ 314 (454)
T 1jl5_A 244 ADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD 314 (454)
T ss_dssp CCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC
T ss_pred CCCCcCCc-ccc---cccccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccC
Confidence 77777764 332 23567777777777663 442 13556666666666654 222111 11
Q ss_pred C-CCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCC
Q 011820 337 L-KRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPN 399 (477)
Q Consensus 337 l-~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~ 399 (477)
+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .... .+.+++++|..
T Consensus 315 ~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~-L~~L~L~~N~l 369 (454)
T 1jl5_A 315 LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQN-LKQLHVEYNPL 369 (454)
T ss_dssp CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTT-CCEEECCSSCC
T ss_pred CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhh-ccEEECCCCCC
Confidence 2 366666666666664 4543 356777777777766 3554 1112 24555556544
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=3.9e-25 Score=215.28 Aligned_cols=207 Identities=24% Similarity=0.256 Sum_probs=141.1
Q ss_pred hcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCc
Q 011820 165 LGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLL 244 (477)
Q Consensus 165 l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 244 (477)
+.++++++++++++++++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 344455555555555555 3444332 4555555555555555455555555555555555555532 221 4566666
Q ss_pred EEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCC
Q 011820 245 KFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNT 324 (477)
Q Consensus 245 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n 324 (477)
+|++++|.++ .+|..+..+++|++|++++|++++..+..+.++++|++|++++|.++ .++...+..+++|+.|+|++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCC
Confidence 6666666665 55666666777777777777777665666777777888888888777 445446677888888888888
Q ss_pred CCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 325 GLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 325 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
++++..+..+..+++|+.|+|++|+++ .+|..+...++|+.|+|++|++.+.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 888655566778899999999999998 788888888899999999999987763
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.9e-25 Score=214.01 Aligned_cols=205 Identities=23% Similarity=0.260 Sum_probs=142.2
Q ss_pred cCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcE
Q 011820 166 GHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLK 245 (477)
Q Consensus 166 ~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 245 (477)
..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 34555666666666554 22 2355566666666666666542 24566666666666666666555555666667777
Q ss_pred EecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCC
Q 011820 246 FDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTG 325 (477)
Q Consensus 246 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~ 325 (477)
|++++|.+++..+..+..+++|++|++++|++++..+..+.++++|++|++++|.+++ ++...+..+++|++|++++|+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCc
Confidence 7777777665555556677777777777777776666566777777888888887773 443356778888888888888
Q ss_pred CCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCCh
Q 011820 326 LAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSE 382 (477)
Q Consensus 326 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 382 (477)
+++..|..+..+++|+.|++++|.+.+. ++.|+.++++.|+++|.+|...
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 8877777788888999999999888754 4468888899999999988653
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=6.7e-25 Score=211.46 Aligned_cols=207 Identities=22% Similarity=0.269 Sum_probs=172.2
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+++|++|++++| .++. + ..+..+++|++|++++|.+++ + +.+.++++|++|++++|.+++..+..+.++++|++|
T Consensus 40 l~~L~~L~l~~~-~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTS-CCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCC-Cccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 478888888887 5653 3 357788889999999888875 3 468888899999999998887777778888899999
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999988777777888899999999999988776777788999999999999998777777888999999999999998
Q ss_pred CcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCC
Q 011820 303 GDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMP 362 (477)
Q Consensus 303 g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 362 (477)
+..+ ..+..+++|++|++++|.+.+. +++|+.|+++.|+++|.+|.+++.++
T Consensus 195 ~~~~-~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 195 SVPD-GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCCT-TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ccCH-HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 5444 4678899999999999988754 45789999999999999999887654
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=5.5e-27 Score=242.53 Aligned_cols=284 Identities=18% Similarity=0.137 Sum_probs=192.7
Q ss_pred EEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhhh---hhcCCCccEEEccCCCCCCCC
Q 011820 84 ITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGW---ENLAGSLESLEFRSNPGLTGP 160 (477)
Q Consensus 84 v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~---~~~~~~L~~L~Ls~n~~l~g~ 160 (477)
++.|+++. +.+.......++..+.++++|++|++++|.+.. ..+.... ....++|++|++++| .+++.
T Consensus 87 L~~L~L~~---n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-----~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~ 157 (461)
T 1z7x_W 87 IQKLSLQN---CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD-----AGLQLLCEGLLDPQCRLEKLQLEYC-SLSAA 157 (461)
T ss_dssp CCEEECTT---SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH-----HHHHHHHHHHTSTTCCCCEEECTTS-CCBGG
T ss_pred eeEEEccC---CCCCHHHHHHHHHHHccCCceeEEECCCCcCch-----HHHHHHHHHHhcCCCcceEEECCCC-CCCHH
Confidence 56666642 333211123567778888888888888877642 1111111 111346888888888 67763
Q ss_pred ----chhhhcCCCCCcEEEcccCCCCCccchhcC-----CCCCCcEEEeecccCCCC----CcccccCCccccEeeeecc
Q 011820 161 ----IPTSLGHLMKLRSLVLLENGLSGELPTNLG-----RLSNLKKLVVSGNWLNGR----IPDSFGYLSELLILDLSRN 227 (477)
Q Consensus 161 ----ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N 227 (477)
++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 355666778888888888887754444443 356888888888888753 4666777888888888888
Q ss_pred cCCCCc-----cccccCCcCCcEEecccCcCCCC----CchhhcCCCCCCEeeccCCcCCccchHHhhc-----CCCCCE
Q 011820 228 SLSGPL-----PLSLGGLTSLLKFDLSNNQLEGK----IPKEIGYLKNITLLDLRNNKFSGELTKSLQE-----MYSLEE 293 (477)
Q Consensus 228 ~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~ 293 (477)
.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.++...+..+.. .++|++
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 776432 22223577888888888888753 5666777888888888888877554444433 268888
Q ss_pred EEcccCCCCCc----CChhhhcCCCCccEEEccCCCCCCCchhhhcC-----CCCCCEEecccccCCC----CChhhcCC
Q 011820 294 MVFSNNPIGGD----LKSLEWKNLQNLVILDLSNTGLAGEVPEFMAE-----LKRLRFLGLSNNKLTG----TISPKLAT 360 (477)
Q Consensus 294 L~Ls~N~l~g~----i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~g----~ip~~l~~ 360 (477)
|++++|.+++. ++. .+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..
T Consensus 318 L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp EECTTSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred eEcCCCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 88888887643 222 3456688888888888887655554432 6788888888888886 67777878
Q ss_pred CCCCCEEEeeCCcCeee
Q 011820 361 MPCVSALYLNGNNLSGE 377 (477)
Q Consensus 361 l~~L~~L~Ls~N~l~g~ 377 (477)
+++|++|++++|++++.
T Consensus 397 ~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCCCEEECCSSSCCHH
T ss_pred CCCccEEECCCCCCCHH
Confidence 88888888888888743
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=3.9e-26 Score=231.15 Aligned_cols=251 Identities=22% Similarity=0.203 Sum_probs=135.7
Q ss_pred cccchhccCCCCCCEEEcccCCCCCCCCCCccChhh--hhhcCCCccEEEccCC--CCCCCCchhhh-------cCCCCC
Q 011820 103 VEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISG--WENLAGSLESLEFRSN--PGLTGPIPTSL-------GHLMKL 171 (477)
Q Consensus 103 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~--~~~~~~~L~~L~Ls~n--~~l~g~ip~~l-------~~l~~L 171 (477)
..++..+..+++|++|+|++|.++. ..+... ....+++|++|+|++| ..+++.+|..+ .++++|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~-----~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGT-----EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECH-----HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCH-----HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 3456667777777777777776652 111110 0112466677777664 23444555444 455666
Q ss_pred cEEEcccCCCCC----ccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCC-------
Q 011820 172 RSLVLLENGLSG----ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGL------- 240 (477)
Q Consensus 172 ~~L~Ls~n~l~~----~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l------- 240 (477)
++|+|++|.+++ .+|..+.++++|++|+|++|.++...+..+.. .+..+
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~l~~~~~~~ 156 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------ALQELAVNKKAK 156 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------HHHHHHHHHHHH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------HHHHHhhhhhcc
Confidence 666666666654 35555555666666666666554322222221 11111
Q ss_pred --cCCcEEecccCcCC-CCCc---hhhcCCCCCCEeeccCCcCCc-----cchHHhhcCCCCCEEEcccCCCC----CcC
Q 011820 241 --TSLLKFDLSNNQLE-GKIP---KEIGYLKNITLLDLRNNKFSG-----ELTKSLQEMYSLEEMVFSNNPIG----GDL 305 (477)
Q Consensus 241 --~~L~~L~L~~N~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----g~i 305 (477)
++|++|++++|.++ +.++ ..+..+++|++|++++|.++. .++..+.++++|++|+|++|.++ +.+
T Consensus 157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 45555555555554 2233 344455556666666665551 12224555566666666666553 233
Q ss_pred ChhhhcCCCCccEEEccCCCCCCC----chhhhcC--CCCCCEEecccccCCC----CChhhc-CCCCCCCEEEeeCCcC
Q 011820 306 KSLEWKNLQNLVILDLSNTGLAGE----VPEFMAE--LKRLRFLGLSNNKLTG----TISPKL-ATMPCVSALYLNGNNL 374 (477)
Q Consensus 306 ~~~~~~~l~~L~~L~Ls~n~l~~~----ip~~l~~--l~~L~~L~Ls~N~l~g----~ip~~l-~~l~~L~~L~Ls~N~l 374 (477)
+. .+..+++|++|+|++|.+++. ++..+.. +++|++|+|++|++++ .+|..+ .++++|++|++++|++
T Consensus 237 ~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 237 AI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 33 345556666666666666544 4455532 6677777777777765 366665 4467777777777777
Q ss_pred eeecC
Q 011820 375 SGELQ 379 (477)
Q Consensus 375 ~g~ip 379 (477)
++..|
T Consensus 316 ~~~~~ 320 (386)
T 2ca6_A 316 SEEDD 320 (386)
T ss_dssp CTTSH
T ss_pred Ccchh
Confidence 65543
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=8.4e-24 Score=225.99 Aligned_cols=233 Identities=27% Similarity=0.319 Sum_probs=162.3
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSG 183 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~ 183 (477)
.+|..+. ++|++|++++|.+. .+|. .+++|++|+|++| .++ .+|. .+++|++|++++|.+++
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~------~lp~-----~l~~L~~L~Ls~N-~l~-~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLT------SLPA-----LPPELRTLEVSGN-QLT-SLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCS------CCCC-----CCTTCCEEEECSC-CCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred ccChhhC--CCCcEEEecCCCCC------CCCC-----cCCCCCEEEcCCC-cCC-cCCC---CCCCCCEEECcCCcCCC
Confidence 5565554 68888888888776 4554 2577888888887 566 4555 66778888888887773
Q ss_pred ccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccc-----------------cCCcCCcEE
Q 011820 184 ELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSL-----------------GGLTSLLKF 246 (477)
Q Consensus 184 ~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-----------------~~l~~L~~L 246 (477)
+|. .+++|++|++++|++++ +|.. +++|++|++++|++++ +|..+ ..+++|+.|
T Consensus 116 -l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L 186 (622)
T 3g06_A 116 -LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQEL 186 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred -CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEE
Confidence 444 45667777777777764 4442 3667777777777664 23221 122556666
Q ss_pred ecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCC
Q 011820 247 DLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGL 326 (477)
Q Consensus 247 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l 326 (477)
++++|.+++ +|. .+++|+.|++++|.++. +|. .+++|++|++++|.+++ +| ..+++|++|++++|++
T Consensus 187 ~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 187 SVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRL 253 (622)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCC
T ss_pred ECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCC
Confidence 666666653 332 23566666666666652 332 24778888998888873 55 3468899999999998
Q ss_pred CCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCC
Q 011820 327 AGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFS 381 (477)
Q Consensus 327 ~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 381 (477)
+ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|+++|.+|..
T Consensus 254 ~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 254 T-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp S-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred C-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 8 5665 6788999999999999 78888999999999999999999887754
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=6.4e-26 Score=229.61 Aligned_cols=244 Identities=19% Similarity=0.311 Sum_probs=154.7
Q ss_pred EEEEEecCCCCCCCCccccccccchhccCCCCCCEEEcccCCCCCCCCCCccChhhh-----hhcCCCccEEEccCCCCC
Q 011820 83 YITALSFGSLHDNSLGCVTNVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGW-----ENLAGSLESLEFRSNPGL 157 (477)
Q Consensus 83 ~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~-----~~~~~~L~~L~Ls~n~~l 157 (477)
+++.|++.. +.++......++..+.++++|++|+|++|.+.. +.+.+|...- ...+++|++|+|++| .+
T Consensus 33 ~L~~L~L~~---n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~--l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 33 SVKEIVLSG---NTIGTEAARWLSENIASKKDLEIAEFSDIFTGR--VKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp CCCEEECTT---SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS--CGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred CccEEECCC---CCCCHHHHHHHHHHHHhCCCccEEeCcccccCc--cccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 467777752 333211112355668899999999999976541 2234554320 123589999999999 68
Q ss_pred CC----CchhhhcCCCCCcEEEcccCCCCCccchhcC----CC---------CCCcEEEeecccCC-CCCc---ccccCC
Q 011820 158 TG----PIPTSLGHLMKLRSLVLLENGLSGELPTNLG----RL---------SNLKKLVVSGNWLN-GRIP---DSFGYL 216 (477)
Q Consensus 158 ~g----~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~----~l---------~~L~~L~L~~n~l~-~~~p---~~l~~l 216 (477)
++ .+|..+.++++|++|+|++|.+++..+..+. .+ ++|++|++++|.++ +.++ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 87 5888899999999999999999754444333 33 67777777777766 3333 234445
Q ss_pred ccccEeeeecccCCCCccccccCCcCCcEEecccCcCCC---CCchhhcCCCCCCEeeccCCcCC----ccchHHhhcCC
Q 011820 217 SELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEG---KIPKEIGYLKNITLLDLRNNKFS----GELTKSLQEMY 289 (477)
Q Consensus 217 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~ 289 (477)
++|++|++++|+++.. | .++..+..+++|++|+|++|.++ +.+|..+..++
T Consensus 187 ~~L~~L~L~~n~l~~~----------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPE----------------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp TTCCEEECCSSCCCHH----------------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred CCcCEEECcCCCCCHh----------------------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 5555555555554410 1 12224455556666666666554 44555666666
Q ss_pred CCCEEEcccCCCCCc----CChhhh--cCCCCccEEEccCCCCCC----Cchhhh-cCCCCCCEEecccccCCCCCh
Q 011820 290 SLEEMVFSNNPIGGD----LKSLEW--KNLQNLVILDLSNTGLAG----EVPEFM-AELKRLRFLGLSNNKLTGTIS 355 (477)
Q Consensus 290 ~L~~L~Ls~N~l~g~----i~~~~~--~~l~~L~~L~Ls~n~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~g~ip 355 (477)
+|++|+|++|.+++. ++. .+ ..+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 666666666666532 222 23 236778888888887776 377766 557888888888888887764
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=9.4e-25 Score=214.48 Aligned_cols=226 Identities=19% Similarity=0.193 Sum_probs=165.1
Q ss_pred CCccEEEccCCCCCCCCchh---hhcCCCCCcEEEcccCCCCCccchhc--CCCCCCcEEEeecccCCCCCc----cccc
Q 011820 144 GSLESLEFRSNPGLTGPIPT---SLGHLMKLRSLVLLENGLSGELPTNL--GRLSNLKKLVVSGNWLNGRIP----DSFG 214 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~---~l~~l~~L~~L~Ls~n~l~~~ip~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~ 214 (477)
..++.+++.++ .++...-. .+..+++|++|++++|.+++..|..+ .++++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34666666665 34321111 11234568888888888877777776 778888888888888876554 3345
Q ss_pred CCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCC--Cc--hhhcCCCCCCEeeccCCcCCcc--chH-Hhhc
Q 011820 215 YLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGK--IP--KEIGYLKNITLLDLRNNKFSGE--LTK-SLQE 287 (477)
Q Consensus 215 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p--~~l~~l~~L~~L~Ls~N~l~~~--~p~-~l~~ 287 (477)
.+++|++|++++|++++..+..+..+++|++|++++|++.+. ++ ..+..+++|++|++++|+++.. .+. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 678888888888888877777888888888888888887642 22 2235788899999999988732 222 3578
Q ss_pred CCCCCEEEcccCCCCCcCChhhhcCC---CCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCC
Q 011820 288 MYSLEEMVFSNNPIGGDLKSLEWKNL---QNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCV 364 (477)
Q Consensus 288 l~~L~~L~Ls~N~l~g~i~~~~~~~l---~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 364 (477)
+++|++|+|++|.+++..|. .+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 89999999999999876564 34444 69999999999998 6777664 7999999999999963 33 5778999
Q ss_pred CEEEeeCCcCee
Q 011820 365 SALYLNGNNLSG 376 (477)
Q Consensus 365 ~~L~Ls~N~l~g 376 (477)
++|+|++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999874
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.8e-25 Score=223.06 Aligned_cols=253 Identities=20% Similarity=0.248 Sum_probs=163.6
Q ss_pred EEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCch----hhhcCCC-CCcEEEcccCCCCCccchhcCCC
Q 011820 118 LSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIP----TSLGHLM-KLRSLVLLENGLSGELPTNLGRL 192 (477)
Q Consensus 118 L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip----~~l~~l~-~L~~L~Ls~n~l~~~ip~~l~~l 192 (477)
++++.|.+++ .+|. +....++|++|++++| .+++..+ ..+.+++ +|++|+|++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~-----~~~~--~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 74 (362)
T 3goz_A 3 YKLTLHPGSN-----PVEE--FTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74 (362)
T ss_dssp EECCCCTTCC-----HHHH--HHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred cccccccchH-----HHHH--HHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH
Confidence 4455555543 4443 2333445777777776 4665555 5566666 67777777777776555555543
Q ss_pred -----CCCcEEEeecccCCCCCccccc----CC-ccccEeeeecccCCCCccccc----cC-CcCCcEEecccCcCCCCC
Q 011820 193 -----SNLKKLVVSGNWLNGRIPDSFG----YL-SELLILDLSRNSLSGPLPLSL----GG-LTSLLKFDLSNNQLEGKI 257 (477)
Q Consensus 193 -----~~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~L~~N~l~~~~p~~l----~~-l~~L~~L~L~~N~l~~~~ 257 (477)
++|++|+|++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 6777777777777665555333 33 677777777777765544443 23 257888888888777533
Q ss_pred ----chhhcCCC-CCCEeeccCCcCCccchHHh----hcC-CCCCEEEcccCCCCCc----CChhhhcC-CCCccEEEcc
Q 011820 258 ----PKEIGYLK-NITLLDLRNNKFSGELTKSL----QEM-YSLEEMVFSNNPIGGD----LKSLEWKN-LQNLVILDLS 322 (477)
Q Consensus 258 ----p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~g~----i~~~~~~~-l~~L~~L~Ls 322 (477)
+..+..++ +|++|++++|++++..+..+ ..+ ++|++|+|++|.+++. ++. .+.. .++|++|+|+
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECC
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECc
Confidence 33445555 78888888888876655433 344 5888888888887642 332 2333 4588888888
Q ss_pred CCCCCCCch----hhhcCCCCCCEEecccccCCCC-------ChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 323 NTGLAGEVP----EFMAELKRLRFLGLSNNKLTGT-------ISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 323 ~n~l~~~ip----~~l~~l~~L~~L~Ls~N~l~g~-------ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
+|.+++..+ ..+..+++|+.|+|++|.+.+. ++..+..+++|++||+++|++.+..+
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 888876554 3346678888889888885543 33456677888889999998876644
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.1e-23 Score=204.89 Aligned_cols=204 Identities=24% Similarity=0.190 Sum_probs=120.8
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchh
Q 011820 109 LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTN 188 (477)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~ 188 (477)
+.+++++++++++++.+. .+|... .+++++|++++| .+++..|..+.++++|++|++++|.+++ ++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~------~ip~~~----~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT------ALPPDL----PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS------SCCSCC----CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC
T ss_pred ccccCCccEEECCCCCCC------cCCCCC----CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCc-ccCC
Confidence 456777777777777665 455432 256777777777 5666666667777777777777777663 3332
Q ss_pred cCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCC
Q 011820 189 LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNIT 268 (477)
Q Consensus 189 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 268 (477)
+.+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+
T Consensus 74 -~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--------------- 136 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL--------------- 136 (290)
T ss_dssp -SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC---------------
T ss_pred -CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC---------------
Confidence 55666666666666665 4455555555555555555555544444444455555555555544
Q ss_pred EeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccc
Q 011820 269 LLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNN 348 (477)
Q Consensus 269 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N 348 (477)
++..+..+..+++|+.|+|++|+++ .++...+..+++|++|+|++|+++ .+|..+...++|+.|+|++|
T Consensus 137 ---------~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 137 ---------KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ---------CCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred ---------CccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 4433334445555555555555555 344434555666666666666666 55666666667777777777
Q ss_pred cCCC
Q 011820 349 KLTG 352 (477)
Q Consensus 349 ~l~g 352 (477)
.+..
T Consensus 206 p~~C 209 (290)
T 1p9a_G 206 PWLC 209 (290)
T ss_dssp CBCC
T ss_pred CccC
Confidence 6653
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=3.6e-26 Score=236.39 Aligned_cols=266 Identities=18% Similarity=0.116 Sum_probs=141.2
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCC----CccEEEccCCCCCCC----CchhhhcCCCCCcEEE
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAG----SLESLEFRSNPGLTG----PIPTSLGHLMKLRSLV 175 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~----~L~~L~Ls~n~~l~g----~ip~~l~~l~~L~~L~ 175 (477)
.++..+..+++|++|++++|.+.. ..+.. +...++ +|++|++++| .++. .+|..+.++++|++|+
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n~l~~-----~~~~~-l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~ 119 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSNELGD-----VGVHC-VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELH 119 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTCCCHH-----HHHHH-HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEE
T ss_pred HHHHHHHhCCCcCEEeCCCCcCCh-----HHHHH-HHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEE
Confidence 345556666666666666665532 11111 111122 5666666666 4552 4466666666666666
Q ss_pred cccCCCCCccchhcC-----CCCCCcEEEeecccCCCCC----cccccCCccccEeeeecccCCCCcccccc-----CCc
Q 011820 176 LLENGLSGELPTNLG-----RLSNLKKLVVSGNWLNGRI----PDSFGYLSELLILDLSRNSLSGPLPLSLG-----GLT 241 (477)
Q Consensus 176 Ls~n~l~~~ip~~l~-----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~ 241 (477)
+++|.+++..+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.++...+..+. ..+
T Consensus 120 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 199 (461)
T 1z7x_W 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCC
T ss_pred CCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCC
Confidence 666666543333221 2445666666666665432 34445556666666666665543332222 244
Q ss_pred CCcEEecccCcCCCC----CchhhcCCCCCCEeeccCCcCCccch----H-HhhcCCCCCEEEcccCCCCCc----CChh
Q 011820 242 SLLKFDLSNNQLEGK----IPKEIGYLKNITLLDLRNNKFSGELT----K-SLQEMYSLEEMVFSNNPIGGD----LKSL 308 (477)
Q Consensus 242 ~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p----~-~l~~l~~L~~L~Ls~N~l~g~----i~~~ 308 (477)
+|++|++++|.+++. ++..+..+++|++|++++|.++.... . ....+++|++|++++|.+++. ++.
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~- 278 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR- 278 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH-
Confidence 666666666666542 35555556666666666666553221 1 112355666666666665532 222
Q ss_pred hhcCCCCccEEEccCCCCCCCchhhhcC-----CCCCCEEecccccCCCC----ChhhcCCCCCCCEEEeeCCcCeee
Q 011820 309 EWKNLQNLVILDLSNTGLAGEVPEFMAE-----LKRLRFLGLSNNKLTGT----ISPKLATMPCVSALYLNGNNLSGE 377 (477)
Q Consensus 309 ~~~~l~~L~~L~Ls~n~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ 377 (477)
.+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 3344566666666666655433333221 24666666666666543 344455556666666666666543
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=7.6e-25 Score=217.04 Aligned_cols=232 Identities=19% Similarity=0.202 Sum_probs=144.6
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCc-cchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGE-LPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~-ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
++++.|++++| .+++..+. +.++++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 45555555555 34444333 34555666666666655543 55555556666666666666555555555566666666
Q ss_pred eeecc-cCCC-CccccccCCcCCcEEecccC-cCCCC-CchhhcCCC-CCCEeeccCC--cCC-ccchHHhhcCCCCCEE
Q 011820 223 DLSRN-SLSG-PLPLSLGGLTSLLKFDLSNN-QLEGK-IPKEIGYLK-NITLLDLRNN--KFS-GELTKSLQEMYSLEEM 294 (477)
Q Consensus 223 ~L~~N-~l~~-~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L 294 (477)
++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+.++++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 66666 4443 24555566667777777777 66643 456667777 7777777777 455 4566677778888888
Q ss_pred EcccCC-CCCcCChhhhcCCCCccEEEccCCC-CCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCC
Q 011820 295 VFSNNP-IGGDLKSLEWKNLQNLVILDLSNTG-LAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGN 372 (477)
Q Consensus 295 ~Ls~N~-l~g~i~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 372 (477)
++++|. +++..+. .+..+++|++|++++|. ++......+..+++|+.|++++| ++...-..+. ..+..|++++|
T Consensus 228 ~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n 303 (336)
T 2ast_B 228 DLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCS 303 (336)
T ss_dssp ECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCC
T ss_pred eCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecc
Confidence 888887 5544443 56677888888888884 33222235777888888888888 5543333332 23556668888
Q ss_pred cCeeecCCC
Q 011820 373 NLSGELQFS 381 (477)
Q Consensus 373 ~l~g~ip~~ 381 (477)
++++..|..
T Consensus 304 ~l~~~~~~~ 312 (336)
T 2ast_B 304 HFTTIARPT 312 (336)
T ss_dssp CSCCTTCSS
T ss_pred cCccccCCc
Confidence 888877743
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=211.45 Aligned_cols=228 Identities=20% Similarity=0.151 Sum_probs=185.9
Q ss_pred CCCCCEEEcccCCCCCCCCCCccCh-hhhhhcCCCccEEEccCCCCCCCCchhhh--cCCCCCcEEEcccCCCCCccc--
Q 011820 112 LKHLKSLSFFNCFTSSQQHPTTIPI-SGWENLAGSLESLEFRSNPGLTGPIPTSL--GHLMKLRSLVLLENGLSGELP-- 186 (477)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~~~~ip~-~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l--~~l~~L~~L~Ls~n~l~~~ip-- 186 (477)
-..++.+.+.++.+... .+.. ..+.. .++|++|++++| .+++.+|..+ .++++|++|++++|.+++..+
T Consensus 63 ~~~l~~l~l~~~~~~~~----~~~~~~~~~~-~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQ----LLVGALRVLA-YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp SCCCCEEEECSCCCBHH----HHHHHHHHHH-HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred hcceeEEEEeCCcCCHH----HHHHHHHhcc-cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 34578888887765420 1110 00112 367999999999 7999999988 899999999999999997655
Q ss_pred --hhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCC--c--cccccCCcCCcEEecccCcCCCCCch-
Q 011820 187 --TNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGP--L--PLSLGGLTSLLKFDLSNNQLEGKIPK- 259 (477)
Q Consensus 187 --~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~p~- 259 (477)
..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++ .++.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 215 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGV 215 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHH
Confidence 4556899999999999999988889999999999999999998753 2 233478999999999999997 3343
Q ss_pred ---hhcCCCCCCEeeccCCcCCccchHHhhcC---CCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhh
Q 011820 260 ---EIGYLKNITLLDLRNNKFSGELTKSLQEM---YSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEF 333 (477)
Q Consensus 260 ---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~ 333 (477)
.+..+++|++|++++|++++..|..+..+ ++|++|++++|.++ .+|.. + .++|++|+|++|++++. |.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~-~--~~~L~~L~Ls~N~l~~~-~~- 289 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG-L--PAKLRVLDLSSNRLNRA-PQ- 289 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC-C--CSCCSCEECCSCCCCSC-CC-
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh-h--cCCCCEEECCCCcCCCC-ch-
Confidence 35788999999999999998878777776 69999999999998 77763 3 38999999999999963 43
Q ss_pred hcCCCCCCEEecccccCCC
Q 011820 334 MAELKRLRFLGLSNNKLTG 352 (477)
Q Consensus 334 l~~l~~L~~L~Ls~N~l~g 352 (477)
+..+++|+.|+|++|+++.
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 6788999999999999985
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=8.2e-24 Score=199.69 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=120.4
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCC-CCCccchhcCCCCCCcEEEeec-ccCCCCCcccccCCccccE
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENG-LSGELPTNLGRLSNLKKLVVSG-NWLNGRIPDSFGYLSELLI 221 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~-l~~~ip~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~ 221 (477)
++|++|++++| .+++..+..+.++++|++|++++|. +++..+..+.++++|++|++++ |.+++..+..|.++++|++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 57778888777 5775555567777777777777775 6644444667777777777776 7776555556666777777
Q ss_pred eeeecccCCCCccccccCCcCCc---EEecccC-cCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCC-EEEc
Q 011820 222 LDLSRNSLSGPLPLSLGGLTSLL---KFDLSNN-QLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLE-EMVF 296 (477)
Q Consensus 222 L~L~~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L 296 (477)
|++++|++++ +|. +..+++|+ +|++++| .+++..+. .+.++++|+ +|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~------------------------~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVN------------------------AFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTT------------------------TTTTTBSSEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcc------------------------cccchhcceeEEEc
Confidence 7777776664 443 55555555 5555555 45433333 344444555 5555
Q ss_pred ccCCCCCcCChhhhcCCCCccEEEccCCC-CCCCchhhhcCC-CCCCEEecccccCCCCChhhcCCCCCCCEEEeeCC
Q 011820 297 SNNPIGGDLKSLEWKNLQNLVILDLSNTG-LAGEVPEFMAEL-KRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGN 372 (477)
Q Consensus 297 s~N~l~g~i~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 372 (477)
++|.++ .+|...+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 164 ~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 555554 444433333 566666666663 664445556666 67777777777776 34433 4566777776654
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3e-23 Score=197.43 Aligned_cols=158 Identities=24% Similarity=0.241 Sum_probs=103.8
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
++|++|++++| .+++..+..+.++++|++|+|++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 56777777777 57766666777777777777777777766666677777777777777777766666666777777777
Q ss_pred eecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 224 LSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 224 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 7777776555555566666666666666666444445556666666666666665544444555555555555555544
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=5.7e-23 Score=201.69 Aligned_cols=193 Identities=23% Similarity=0.355 Sum_probs=115.2
Q ss_pred CCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEE
Q 011820 167 HLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKF 246 (477)
Q Consensus 167 ~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 246 (477)
++++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 3445555555555554 233 34555555555555555553322 55555555555555555532 245556666666
Q ss_pred ecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCC
Q 011820 247 DLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGL 326 (477)
Q Consensus 247 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l 326 (477)
++++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|++
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCcc
Confidence 666666653 332 5666666666666666664333 6666677777777776663 332 56667777777777777
Q ss_pred CCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCee
Q 011820 327 AGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSG 376 (477)
Q Consensus 327 ~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 376 (477)
++..+ +..+++|++|++++|++++..| +..+++|++|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 64333 6667777777777777775432 6777777777777777764
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.4e-22 Score=198.83 Aligned_cols=192 Identities=25% Similarity=0.365 Sum_probs=138.7
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+++|++|++++| .++. +| .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+++. + .+..+++|++|
T Consensus 40 l~~L~~L~l~~~-~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred cCCcCEEEeeCC-CccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 356777777766 4553 44 46667777777777777764 333 77777777777777777643 3 56777777777
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
++++|++++. + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 7777777753 3 277777888888888877743 32 7778888888888888875433 778888888888888887
Q ss_pred CcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCC
Q 011820 303 GDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTG 352 (477)
Q Consensus 303 g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 352 (477)
+ ++. +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 187 ~-~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 D-ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp C-CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred c-Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3 442 5678888888998888885543 7888899999999998874
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.1e-22 Score=193.64 Aligned_cols=180 Identities=22% Similarity=0.278 Sum_probs=117.1
Q ss_pred cEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCC
Q 011820 196 KKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNN 275 (477)
Q Consensus 196 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 275 (477)
++++++++.++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34444444444 2333222 34455555555555444444555555555555555555544555555666666666666
Q ss_pred cCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCCh
Q 011820 276 KFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTIS 355 (477)
Q Consensus 276 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip 355 (477)
++++..+..+..+++|++|+|++|.++ .++...+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 666555555666667777777777766 4444456677888888888888886666678888889999999999887777
Q ss_pred hhcCCCCCCCEEEeeCCcCeeecC
Q 011820 356 PKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 356 ~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
..+..+++|++|+|++|+++|...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTST
T ss_pred HHHhCCCCCCEEEeeCCceeCCcc
Confidence 788888899999999999987743
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=7.6e-22 Score=210.88 Aligned_cols=240 Identities=25% Similarity=0.245 Sum_probs=171.0
Q ss_pred CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCC
Q 011820 114 HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLS 193 (477)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~ 193 (477)
+++.|++++|.+. .+|... .++|++|++++| .++ .+|. .+++|++|+|++|+++ .+|. .++
T Consensus 41 ~l~~L~ls~n~L~------~lp~~l----~~~L~~L~L~~N-~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~ 101 (622)
T 3g06_A 41 GNAVLNVGESGLT------TLPDCL----PAHITTLVIPDN-NLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPP 101 (622)
T ss_dssp CCCEEECCSSCCS------CCCSCC----CTTCSEEEECSC-CCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCT
T ss_pred CCcEEEecCCCcC------ccChhh----CCCCcEEEecCC-CCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCC
Confidence 5889999999887 577543 379999999999 688 5666 6799999999999998 5776 779
Q ss_pred CCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhc---CC------
Q 011820 194 NLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIG---YL------ 264 (477)
Q Consensus 194 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~---~l------ 264 (477)
+|++|++++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|..+. .+
T Consensus 102 ~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 102 GLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQ 172 (622)
T ss_dssp TCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC
T ss_pred CCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCC
Confidence 99999999999985 454 57899999999999985 5654 4889999999999884 443221 11
Q ss_pred --------CCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcC
Q 011820 265 --------KNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAE 336 (477)
Q Consensus 265 --------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~ 336 (477)
++|+.|++++|.+++ +|. ..++|+.|++++|.++ .+|. .+++|++|++++|++++ +| ..
T Consensus 173 l~~l~~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp---~~ 239 (622)
T 3g06_A 173 LTSLPMLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP---VL 239 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC---CC
T ss_pred CCCCcccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC---CC
Confidence 444445555554442 221 1244555555555554 3332 24678888888888874 55 45
Q ss_pred CCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCC
Q 011820 337 LKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNL 400 (477)
Q Consensus 337 l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~l 400 (477)
+++|+.|+|++|+++ .+|. .+++|++|+|++|+++ .+|........+ +.+++.+|+..
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N~l~ 297 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLS 297 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSCCCC
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCCCCC
Confidence 678888888888888 5665 5678888999999888 777543322222 45667777643
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=8.3e-23 Score=192.77 Aligned_cols=204 Identities=19% Similarity=0.164 Sum_probs=161.7
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEccc-CCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLE-NGLS 182 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~-n~l~ 182 (477)
++|. +. ++|++|++++|.+. .+|...+.. +++|++|++++|..+++..+..+.++++|++|++++ |.++
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~------~i~~~~~~~-l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLR------TIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCS------EECTTTTTT-CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred ccCC-CC--CcccEEEEeCCcce------EECHHHccC-CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 4565 33 38999999999987 566655555 699999999999337755556899999999999999 9999
Q ss_pred CccchhcCCCCCCcEEEeecccCCCCCcccccCCcccc---Eeeeecc-cCCCCccccccCCcCCc-EEecccCcCCCCC
Q 011820 183 GELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELL---ILDLSRN-SLSGPLPLSLGGLTSLL-KFDLSNNQLEGKI 257 (477)
Q Consensus 183 ~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~ 257 (477)
+..+..+.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++ .+
T Consensus 95 ~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i 171 (239)
T 2xwt_C 95 YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV 171 (239)
T ss_dssp EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EE
T ss_pred EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-cc
Confidence 6656788999999999999999996 666 88888888 9999999 89876667799999999 9999999998 66
Q ss_pred chhhcCCCCCCEeeccCCc-CCccchHHhhcC-CCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCC
Q 011820 258 PKEIGYLKNITLLDLRNNK-FSGELTKSLQEM-YSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNT 324 (477)
Q Consensus 258 p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n 324 (477)
|......++|++|++++|+ +++..+..+..+ ++|++|++++|+++ .+|.. .+++|+.|+++++
T Consensus 172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 6544444788888888884 775556667777 77888888777776 45532 4567777776654
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.7e-24 Score=213.53 Aligned_cols=249 Identities=18% Similarity=0.146 Sum_probs=194.1
Q ss_pred ccccchhccCCCCCCEEEcccCCCCCCCCCCccCh----hhhhhcCC-CccEEEccCCCCCCCCchhhhcCC-----CCC
Q 011820 102 NVEFREQLFELKHLKSLSFFNCFTSSQQHPTTIPI----SGWENLAG-SLESLEFRSNPGLTGPIPTSLGHL-----MKL 171 (477)
Q Consensus 102 ~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~----~~~~~~~~-~L~~L~Ls~n~~l~g~ip~~l~~l-----~~L 171 (477)
.|.+|..+...++|++|++++|.++ .++. ..+.. ++ +|++|+|++| .+++..+..+..+ ++|
T Consensus 11 ~~~~~~~~~~~~~L~~L~Ls~n~l~------~~~~~~l~~~l~~-~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 11 SNPVEEFTSIPHGVTSLDLSLNNLY------SISTVELIQAFAN-TPASVTSLNLSGN-SLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp CCHHHHHHTSCTTCCEEECTTSCGG------GSCHHHHHHHHHT-CCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred hHHHHHHHhCCCCceEEEccCCCCC------hHHHHHHHHHHHh-CCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCc
Confidence 3667777777778999999999987 3443 33444 45 8999999999 7998878777765 999
Q ss_pred cEEEcccCCCCCccchhc----CCC-CCCcEEEeecccCCCCCccccc----C-CccccEeeeecccCCCCc----cccc
Q 011820 172 RSLVLLENGLSGELPTNL----GRL-SNLKKLVVSGNWLNGRIPDSFG----Y-LSELLILDLSRNSLSGPL----PLSL 237 (477)
Q Consensus 172 ~~L~Ls~n~l~~~ip~~l----~~l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~----p~~l 237 (477)
++|+|++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999999997766644 444 8999999999999877665543 3 369999999999998543 4445
Q ss_pred cCCc-CCcEEecccCcCCCCCchhhc----CC-CCCCEeeccCCcCCcc----chHHhhc-CCCCCEEEcccCCCCCcCC
Q 011820 238 GGLT-SLLKFDLSNNQLEGKIPKEIG----YL-KNITLLDLRNNKFSGE----LTKSLQE-MYSLEEMVFSNNPIGGDLK 306 (477)
Q Consensus 238 ~~l~-~L~~L~L~~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~g~i~ 306 (477)
..++ +|++|++++|.+++..+..+. .+ ++|++|++++|.++.. ++..+.. .++|++|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 5665 999999999999877765444 45 6999999999999863 5666666 4599999999999985432
Q ss_pred ---hhhhcCCCCccEEEccCCCCCCCc-------hhhhcCCCCCCEEecccccCCCCChhhc
Q 011820 307 ---SLEWKNLQNLVILDLSNTGLAGEV-------PEFMAELKRLRFLGLSNNKLTGTISPKL 358 (477)
Q Consensus 307 ---~~~~~~l~~L~~L~Ls~n~l~~~i-------p~~l~~l~~L~~L~Ls~N~l~g~ip~~l 358 (477)
...+..+++|++|++++|.+.+.. +..+..+++|+.||+++|++.+..+..+
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 123467899999999999965433 3356778899999999999997755443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=5.3e-24 Score=210.94 Aligned_cols=268 Identities=16% Similarity=0.223 Sum_probs=211.1
Q ss_pred CCCCCCCCCCcEeCCCCCceEEEEEecCCCCCCCCccccccccchhccCC--CCCCEEEcccCCCCCCCCCCccChhhhh
Q 011820 63 DPCGWTPIEGVSCDIYDDLWYITALSFGSLHDNSLGCVTNVEFREQLFEL--KHLKSLSFFNCFTSSQQHPTTIPISGWE 140 (477)
Q Consensus 63 d~C~w~~~~Gv~C~~~~~~~~v~~L~l~~~~~~~l~~~~~g~i~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~ip~~~~~ 140 (477)
-|..|. ++.|+.. .++.+++.. +.+ -+..+..+ ++++.|++++|.+.+ ..+. .+
T Consensus 35 vc~~W~---~~~~~~~----~~~~l~l~~---~~~-------~~~~~~~~~~~~l~~L~l~~n~l~~-----~~~~-~~- 90 (336)
T 2ast_B 35 VCKRWY---RLASDES----LWQTLDLTG---KNL-------HPDVTGRLLSQGVIAFRCPRSFMDQ-----PLAE-HF- 90 (336)
T ss_dssp SCHHHH---HHHTCST----TSSEEECTT---CBC-------CHHHHHHHHHTTCSEEECTTCEECS-----CCCS-CC-
T ss_pred HHHHHH---HHhcCch----hheeecccc---ccC-------CHHHHHhhhhccceEEEcCCccccc-----cchh-hc-
Confidence 345674 7777632 234566642 222 14556666 899999999998875 3332 22
Q ss_pred hcCCCccEEEccCCCCCCCC-chhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecc-cCCC-CCcccccCCc
Q 011820 141 NLAGSLESLEFRSNPGLTGP-IPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGN-WLNG-RIPDSFGYLS 217 (477)
Q Consensus 141 ~~~~~L~~L~Ls~n~~l~g~-ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~ 217 (477)
. +++|++|++++| .+++. +|..+.++++|++|++++|.+++..|..++++++|++|++++| .+++ .++..+..++
T Consensus 91 ~-~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 91 S-PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp C-CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred c-CCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 2 589999999999 68766 8888999999999999999999889999999999999999999 6775 3677788999
Q ss_pred cccEeeeecc-cCCCC-ccccccCCc-CCcEEecccC--cCC-CCCchhhcCCCCCCEeeccCCc-CCccchHHhhcCCC
Q 011820 218 ELLILDLSRN-SLSGP-LPLSLGGLT-SLLKFDLSNN--QLE-GKIPKEIGYLKNITLLDLRNNK-FSGELTKSLQEMYS 290 (477)
Q Consensus 218 ~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 290 (477)
+|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+.++++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 9999999999 88864 677788999 9999999999 565 5677888899999999999999 77778889999999
Q ss_pred CCEEEcccCC-CCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCC
Q 011820 291 LEEMVFSNNP-IGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLAT 360 (477)
Q Consensus 291 L~~L~Ls~N~-l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 360 (477)
|++|++++|. +..... ..+..+++|++|++++| ++...-..+. .+++.|++++|++++..|..+++
T Consensus 249 L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 9999999995 321111 24678999999999999 6544333332 24666779999999999987765
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.9e-21 Score=194.16 Aligned_cols=221 Identities=18% Similarity=0.154 Sum_probs=89.2
Q ss_pred CccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccch-hcCCCCCCcE-EEeecccCCCCCcccccCCccccEe
Q 011820 145 SLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPT-NLGRLSNLKK-LVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 145 ~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~-~l~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
++++|+|++| .++...+..|.++++|++|+|++|++.+.+|. .|.+++++++ +.+..|+++...|..|..+++|++|
T Consensus 31 ~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 3444444444 34322122344444444444444444333332 2334444332 2333344443334444444444444
Q ss_pred eeecccCCCCccccccCCcCCcEEeccc-CcCCCCCchhhcCCC-CCCEeeccCCcCCccchHHhhcCCCCCEEEcccCC
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSN-NQLEGKIPKEIGYLK-NITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNP 300 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 300 (477)
++++|+++...+..+....++..|++.+ +.+....+..+..+. .++.|++++|+++ .++.......+|+++++++++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCC
Confidence 4444444433333333333444444433 223221122233322 3444555555444 222222233444555554322
Q ss_pred CCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeC
Q 011820 301 IGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNG 371 (477)
Q Consensus 301 l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 371 (477)
..+.+|...|..+++|++|++++|+++ .+|. ..+.+|+.|.+.++.--..+|. +.++++|+.+++++
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 222444444444555555555555554 2222 1123344444333332224442 44455555555543
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.5e-21 Score=180.06 Aligned_cols=159 Identities=23% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecc
Q 011820 170 KLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLS 249 (477)
Q Consensus 170 ~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 249 (477)
+|++|++++|++++..+..+.++++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333334444444444444444443333334444444444444
Q ss_pred cCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCC
Q 011820 250 NNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGE 329 (477)
Q Consensus 250 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ 329 (477)
+|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|++|+++.|+++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCce
Confidence 444443333334444445555555444443333334444444444444443332 123344444444444444
Q ss_pred chhhhcC
Q 011820 330 VPEFMAE 336 (477)
Q Consensus 330 ip~~l~~ 336 (477)
+|.+++.
T Consensus 181 ip~~~~~ 187 (208)
T 2o6s_A 181 VRNSAGS 187 (208)
T ss_dssp BBCTTSS
T ss_pred eeccCcc
Confidence 4444433
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=9.9e-22 Score=207.67 Aligned_cols=186 Identities=25% Similarity=0.349 Sum_probs=117.9
Q ss_pred CccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeee
Q 011820 145 SLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDL 224 (477)
Q Consensus 145 ~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 224 (477)
+|++|++++| .+++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n-~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRL-NLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSS-CCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCC-CCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 7777788777 5765 666553 67777777777777 566 446777777777777775 555 544 7777777
Q ss_pred ecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCc
Q 011820 225 SRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGD 304 (477)
Q Consensus 225 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 304 (477)
++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|++|+|++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 7777775 554 56677777777777764 554 45667777777777665 444 43 66666666666666 5
Q ss_pred CChhhhcCCCCc-------cEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCC
Q 011820 305 LKSLEWKNLQNL-------VILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLAT 360 (477)
Q Consensus 305 i~~~~~~~l~~L-------~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 360 (477)
+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus 195 lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 553 221 44 66666666665 45555555666666666666666555555544
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.5e-21 Score=206.23 Aligned_cols=186 Identities=25% Similarity=0.292 Sum_probs=111.0
Q ss_pred CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCC
Q 011820 114 HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLS 193 (477)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~ 193 (477)
+|+.|++++|.+. .+|... .++|++|+|++| .++ .+| ..+++|++|++++|.+++ +|. +.+
T Consensus 60 ~L~~L~Ls~n~L~------~lp~~l----~~~L~~L~Ls~N-~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLS------SLPDNL----PPQITVLEITQN-ALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-- 120 (571)
T ss_dssp TCSEEECCSSCCS------CCCSCC----CTTCSEEECCSS-CCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--
T ss_pred CccEEEeCCCCCC------ccCHhH----cCCCCEEECcCC-CCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--
Confidence 6666666666655 244332 256666666666 465 455 345666666666666664 555 443
Q ss_pred CCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeecc
Q 011820 194 NLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLR 273 (477)
Q Consensus 194 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 273 (477)
+|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|+|+
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 66666666666665 444 45666666666666664 444 45666666666666664 555 44 666666666
Q ss_pred CCcCCccchHHhhcCCCC-------CEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcC
Q 011820 274 NNKFSGELTKSLQEMYSL-------EEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAE 336 (477)
Q Consensus 274 ~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~ 336 (477)
+|+++ .+|. +.. +| +.|+|++|.++ .+|. .+..+++|+.|+|++|.+++.+|..+..
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE-NILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG-GGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH-HHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 66666 4444 332 45 66666666666 4554 3334666666666666666666666544
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.3e-21 Score=178.82 Aligned_cols=174 Identities=24% Similarity=0.219 Sum_probs=92.1
Q ss_pred cEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccC
Q 011820 172 RSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNN 251 (477)
Q Consensus 172 ~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 251 (477)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555555 344333 346666666666666555555566666666666666666444444555556666666665
Q ss_pred cCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCch
Q 011820 252 QLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVP 331 (477)
Q Consensus 252 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip 331 (477)
.+++..+..+..+++|++|++++|++++..+..+.+ +++|++|++++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK-------------------------LTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------CTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc-------------------------CCcCCEEECCCCccceeCH
Confidence 555443344455555555555555555433333444 4455555555555544333
Q ss_pred hhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCC
Q 011820 332 EFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQF 380 (477)
Q Consensus 332 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 380 (477)
..+..+++|++|++++|.+.+. ++.|++|+++.|+++|.+|.
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBC
T ss_pred HHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeec
Confidence 3444555555555555544432 23455555555555555553
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.8e-20 Score=187.16 Aligned_cols=230 Identities=20% Similarity=0.171 Sum_probs=181.7
Q ss_pred ccchhccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchh-hhcCCCCCcE-EEcccCCC
Q 011820 104 EFREQLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPT-SLGHLMKLRS-LVLLENGL 181 (477)
Q Consensus 104 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~-~l~~l~~L~~-L~Ls~n~l 181 (477)
+||..+ .+++++|+|++|.++ .||...|.+ +++|++|+|++| .+.+.+|. .|.++++|++ +.+..|++
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~------~i~~~~f~~-l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLR------VIQKGAFSG-FGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCS------EECTTSSTT-CTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred ccCcCc--CCCCCEEEccCCcCC------CcCHHHHcC-CCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCcc
Confidence 466655 368999999999987 688776666 599999999999 67767765 5788998876 66777999
Q ss_pred CCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeec-ccCCCCccccccCCc-CCcEEecccCcCCCCCch
Q 011820 182 SGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSR-NSLSGPLPLSLGGLT-SLLKFDLSNNQLEGKIPK 259 (477)
Q Consensus 182 ~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~ 259 (477)
+...|..|.++++|++|++++|++++..+..+....++..|++.+ +++....+..+..+. .++.|++++|.++ .+|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~ 171 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh
Confidence 976678899999999999999999977777777778899999976 456544445666664 6899999999998 5666
Q ss_pred hhcCCCCCCEeeccC-CcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCC
Q 011820 260 EIGYLKNITLLDLRN-NKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELK 338 (477)
Q Consensus 260 ~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~ 338 (477)
......+|++|++++ |.++...+..+..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.--..+|. +..++
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l~~~~l~~lP~-l~~l~ 246 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTYNLKKLPT-LEKLV 246 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhccCCCcCcCCC-chhCc
Confidence 666778999999986 5555443456899999999999999998 67753 356777787766655457774 78899
Q ss_pred CCCEEeccccc
Q 011820 339 RLRFLGLSNNK 349 (477)
Q Consensus 339 ~L~~L~Ls~N~ 349 (477)
+|+.+++.++.
T Consensus 247 ~L~~l~l~~~~ 257 (350)
T 4ay9_X 247 ALMEASLTYPS 257 (350)
T ss_dssp SCCEEECSCHH
T ss_pred ChhhCcCCCCc
Confidence 99999998754
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1e-21 Score=209.31 Aligned_cols=283 Identities=12% Similarity=0.059 Sum_probs=159.2
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCC----CCchhhhcCCCCCcEEEcccCCCCCc
Q 011820 109 LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLT----GPIPTSLGHLMKLRSLVLLENGLSGE 184 (477)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~----g~ip~~l~~l~~L~~L~Ls~n~l~~~ 184 (477)
..++++|++|++++|.+.+... ..++. +...+++|++|+++.| .++ +.++..+.++++|++|++++|.+.+
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~-~~l~~--~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~- 234 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDG-KWLHE--LAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILE- 234 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCS-HHHHH--HHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-
T ss_pred HhhCCCCCEEECccccccCcch-hHHHH--HHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHH-
Confidence 3467888888888876543100 00111 1122567777777776 455 2344445566777777777766553
Q ss_pred cchhcCCCCCCcEEEeeccc--------------------------CCCCCcccccCCccccEeeeecccCCCCcc-ccc
Q 011820 185 LPTNLGRLSNLKKLVVSGNW--------------------------LNGRIPDSFGYLSELLILDLSRNSLSGPLP-LSL 237 (477)
Q Consensus 185 ip~~l~~l~~L~~L~L~~n~--------------------------l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l 237 (477)
+|..+.++++|++|+++... ..+.+|..+..+++|++|++++|.+++... ..+
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 44444444444444443211 112344455556667777776666543222 223
Q ss_pred cC------------------------CcCCcEEeccc-----------CcCCCC-CchhhcCCCCCCEeeccCCcCCccc
Q 011820 238 GG------------------------LTSLLKFDLSN-----------NQLEGK-IPKEIGYLKNITLLDLRNNKFSGEL 281 (477)
Q Consensus 238 ~~------------------------l~~L~~L~L~~-----------N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~ 281 (477)
.. +++|++|++++ |.+++. ++.....+++|++|+++.|.+++..
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 33 44555555552 333322 1222334666777777666666655
Q ss_pred hHHhhc-CCCCCEEEcc----cCCCCCc-----CChhhhcCCCCccEEEccCCC--CCCCchhhhc-CCCCCCEEecccc
Q 011820 282 TKSLQE-MYSLEEMVFS----NNPIGGD-----LKSLEWKNLQNLVILDLSNTG--LAGEVPEFMA-ELKRLRFLGLSNN 348 (477)
Q Consensus 282 p~~l~~-l~~L~~L~Ls----~N~l~g~-----i~~~~~~~l~~L~~L~Ls~n~--l~~~ip~~l~-~l~~L~~L~Ls~N 348 (477)
+..+.. +++|++|+++ .|.+++. ++. .+.++++|++|++++|. +++..+..+. .+++|++|++++|
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 555554 7777777775 4555532 221 24557778888886543 6655555554 3788889999988
Q ss_pred cCCC-CChhhcCCCCCCCEEEeeCCcCeeecCCCh-hhhccccCcccccCCC
Q 011820 349 KLTG-TISPKLATMPCVSALYLNGNNLSGELQFSE-WFYGKMGRRFGAWNNP 398 (477)
Q Consensus 349 ~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~-~~~~~~~~~~~~~~N~ 398 (477)
++++ .++..+..+++|++|++++|++++...... ..... .+.+++++|.
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~ls~n~ 524 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS-LRYLWVQGYR 524 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS-CCEEEEESCB
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc-cCeeECcCCc
Confidence 8886 455566788889999999998865422111 11112 2566677776
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.5e-21 Score=207.97 Aligned_cols=219 Identities=19% Similarity=0.164 Sum_probs=161.5
Q ss_pred CCchhhhcCCCCCcEEEcccCCCCCccc-hhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeec-----------
Q 011820 159 GPIPTSLGHLMKLRSLVLLENGLSGELP-TNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSR----------- 226 (477)
Q Consensus 159 g~ip~~l~~l~~L~~L~Ls~n~l~~~ip-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~----------- 226 (477)
+.+|..+..+++|++|++++|.+++... ..+.++++|++|+++++...+.++.....+++|++|++++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 3455566667777777777777654433 3356777788887773322223334445678899999983
Q ss_pred ccCCCC-ccccccCCcCCcEEecccCcCCCCCchhhcC-CCCCCEeecc----CCcCCcc-----chHHhhcCCCCCEEE
Q 011820 227 NSLSGP-LPLSLGGLTSLLKFDLSNNQLEGKIPKEIGY-LKNITLLDLR----NNKFSGE-----LTKSLQEMYSLEEMV 295 (477)
Q Consensus 227 N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~ 295 (477)
|.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|++|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 555533 2233456899999999999999887777776 9999999996 6788863 566688899999999
Q ss_pred cccCC--CCCcCChhhhcCCCCccEEEccCCCCCC-CchhhhcCCCCCCEEecccccCCCC-ChhhcCCCCCCCEEEeeC
Q 011820 296 FSNNP--IGGDLKSLEWKNLQNLVILDLSNTGLAG-EVPEFMAELKRLRFLGLSNNKLTGT-ISPKLATMPCVSALYLNG 371 (477)
Q Consensus 296 Ls~N~--l~g~i~~~~~~~l~~L~~L~Ls~n~l~~-~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~ 371 (477)
+++|. +++.........+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|++|+|++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 98643 5544433333458999999999999986 4566678899999999999999865 444556789999999999
Q ss_pred CcCeee
Q 011820 372 NNLSGE 377 (477)
Q Consensus 372 N~l~g~ 377 (477)
|++++.
T Consensus 523 n~it~~ 528 (592)
T 3ogk_B 523 YRASMT 528 (592)
T ss_dssp CBCCTT
T ss_pred CcCCHH
Confidence 998753
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2e-19 Score=174.85 Aligned_cols=171 Identities=27% Similarity=0.363 Sum_probs=95.9
Q ss_pred cCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcE
Q 011820 166 GHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLK 245 (477)
Q Consensus 166 ~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 245 (477)
..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 456677777777777763 33 36667777777777777765433 6666666666666666654 22 3555555556
Q ss_pred EecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCC
Q 011820 246 FDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTG 325 (477)
Q Consensus 246 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~ 325 (477)
|++++|.+++ + ..+..+++|++|++++|++++. ..+ ..+++|++|++++|+
T Consensus 117 L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l-------------------------~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVL-------------------------SRLTKLDTLSLEDNQ 167 (291)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGG-------------------------GGCTTCSEEECCSSC
T ss_pred EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhh-------------------------ccCCCCCEEEccCCc
Confidence 6555555553 2 2344455555555555544432 233 445555555555555
Q ss_pred CCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 326 LAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 326 l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+++..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++
T Consensus 168 l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 168 ISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred cccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 553332 4555555555555555553 33 2555555666666665554
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.9e-19 Score=175.03 Aligned_cols=169 Identities=25% Similarity=0.342 Sum_probs=133.9
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+++|++|++++| .++. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ +| .+..+++|++|
T Consensus 45 l~~L~~L~l~~~-~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred cCcccEEEccCC-Cccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 589999999999 6774 44 48899999999999999996444 9999999999999999986 33 48999999999
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|++|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 9999999864 5788999999999999999864 578899999999999999886544 666777777777777665
Q ss_pred CcCChhhhcCCCCccEEEccCCCCC
Q 011820 303 GDLKSLEWKNLQNLVILDLSNTGLA 327 (477)
Q Consensus 303 g~i~~~~~~~l~~L~~L~Ls~n~l~ 327 (477)
.++ .+..+++|+.|++++|.++
T Consensus 192 -~l~--~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 -DLR--ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -BCG--GGTTCTTCSEEEEEEEEEE
T ss_pred -CCh--hhccCCCCCEEECcCCccc
Confidence 232 2344444444444444443
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.5e-19 Score=168.48 Aligned_cols=157 Identities=22% Similarity=0.319 Sum_probs=124.2
Q ss_pred cEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccC
Q 011820 220 LILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNN 299 (477)
Q Consensus 220 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 299 (477)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|+|++|++++..|..+.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444433 46777777777777555556777777888888888777777777888888888888888
Q ss_pred CCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 300 PIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 300 ~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
.++ .++...+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|++.+..+
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 887 5665567888999999999999998888899999999999999999998777789999999999999999998876
Q ss_pred C
Q 011820 380 F 380 (477)
Q Consensus 380 ~ 380 (477)
.
T Consensus 170 l 170 (220)
T 2v9t_B 170 L 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=6e-20 Score=195.85 Aligned_cols=171 Identities=25% Similarity=0.331 Sum_probs=125.2
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+++|+.|++++| .+.. +| .+..+++|++|+|++|.+++..| +..+++|++|+|++|.+++ +| .+..+++|++|
T Consensus 42 L~~L~~L~l~~n-~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTC-CCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred CCCCCEEECcCC-CCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 477888888877 5663 34 47778888888888888875443 7778888888888888774 33 57777888888
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+|++|.+++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 8888887752 3577778888888888887754 457777888888888887776555 777778888888888776
Q ss_pred CcCChhhhcCCCCccEEEccCCCCCCC
Q 011820 303 GDLKSLEWKNLQNLVILDLSNTGLAGE 329 (477)
Q Consensus 303 g~i~~~~~~~l~~L~~L~Ls~n~l~~~ 329 (477)
+ ++ .+..+++|+.|+|++|.+++.
T Consensus 189 ~-l~--~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 D-LR--ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp B-CG--GGTTCTTCSEEECCSEEEECC
T ss_pred C-Ch--HHccCCCCCEEEccCCcCcCC
Confidence 3 43 466777788888887777643
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.1e-19 Score=193.78 Aligned_cols=190 Identities=23% Similarity=0.302 Sum_probs=120.2
Q ss_pred CccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeee
Q 011820 145 SLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDL 224 (477)
Q Consensus 145 ~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 224 (477)
.+..+++..+ .+.+.++ +..+++|++|++++|.+. .+| .+..+++|++|+|++|.+++..| +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~-~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKK-SVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCS-CTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCC-Ccccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 3444556555 4554433 456778888888888887 344 47778888888888888876544 777788888888
Q ss_pred ecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCc
Q 011820 225 SRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGD 304 (477)
Q Consensus 225 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 304 (477)
++|.+++ +| .+..+++|++|+|++|.+++ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 8887764 23 56677777777777777764 2 3366666666666666666643 3455666666666666666533
Q ss_pred CChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCC
Q 011820 305 LKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTG 352 (477)
Q Consensus 305 i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g 352 (477)
.+ +..+++|+.|+|++|++++. | .+..+++|+.|+|++|++++
T Consensus 169 ~~---l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP---LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG---GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred hh---hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 22 44555666666666665532 2 35555566666666665553
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=167.52 Aligned_cols=158 Identities=18% Similarity=0.260 Sum_probs=121.1
Q ss_pred cEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCc-hhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEccc
Q 011820 220 LILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIP-KEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSN 298 (477)
Q Consensus 220 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 298 (477)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35555555554 2444332 234666666666665433 3466777777777777777766666777888888888888
Q ss_pred CCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeec
Q 011820 299 NPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGEL 378 (477)
Q Consensus 299 N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 378 (477)
|.+++ ++...+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+++|++|+|++|+++|.+
T Consensus 91 N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 88874 44446788889999999999999888888999999999999999999888999999999999999999999988
Q ss_pred CCC
Q 011820 379 QFS 381 (477)
Q Consensus 379 p~~ 381 (477)
+..
T Consensus 170 ~l~ 172 (220)
T 2v70_A 170 YLA 172 (220)
T ss_dssp GGH
T ss_pred chH
Confidence 754
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.5e-19 Score=181.33 Aligned_cols=183 Identities=26% Similarity=0.246 Sum_probs=105.7
Q ss_pred cEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCccccc-CCccccEeeeecccCCCCccccccCCcCCcEEeccc
Q 011820 172 RSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFG-YLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSN 250 (477)
Q Consensus 172 ~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 250 (477)
+.+++++++++ .+|..+. +.+++|+|++|++++..+..+. ++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777776 4665543 3467777777777765555565 677777777777777655555666666666666666
Q ss_pred CcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCc
Q 011820 251 NQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEV 330 (477)
Q Consensus 251 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~i 330 (477)
|.+++..+..|..+++|++|+|++|++++..+..+.++++|++|+|++|.++ .+|...+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~------------------ 158 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKD------------------ 158 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC-------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcC------------------
Confidence 6666544555666666666666666666555555555555555555555555 333322210
Q ss_pred hhhhcCCCCCCEEecccccCCCCChhhcCCCCC--CCEEEeeCCcCeeecC
Q 011820 331 PEFMAELKRLRFLGLSNNKLTGTISPKLATMPC--VSALYLNGNNLSGELQ 379 (477)
Q Consensus 331 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~--L~~L~Ls~N~l~g~ip 379 (477)
+..+++|+.|+|++|++++..+..+..++. ++.|+|++|++.+.+.
T Consensus 159 ---~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 159 ---GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp ------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred ---cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 033455555555555555333334444443 2455556665555443
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=4.1e-19 Score=166.51 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=114.0
Q ss_pred cEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccC
Q 011820 220 LILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNN 299 (477)
Q Consensus 220 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 299 (477)
+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|+++...+..+..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34555555544 3444332 56666666666666665666666777777777777776554455667777777777777
Q ss_pred CCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 300 PIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 300 ~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
.++ .++...+..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|+++|.++
T Consensus 99 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 777 444445677888888888888888 778888889999999999999997666778889999999999999998876
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.2e-19 Score=180.03 Aligned_cols=179 Identities=25% Similarity=0.197 Sum_probs=151.1
Q ss_pred ccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcC-CCCCCcEEEeecccCCCCCcccccCCccccEeee
Q 011820 146 LESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLG-RLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDL 224 (477)
Q Consensus 146 L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 224 (477)
-+.++++++ .++ .+|..+. +.+++|+|++|++++..+..+. ++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 20 ~~~l~c~~~-~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQ-QLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSS-CCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCC-CcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 468999988 687 5777654 4689999999999976666677 9999999999999999888888999999999999
Q ss_pred ecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHh---hcCCCCCEEEcccCCC
Q 011820 225 SRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSL---QEMYSLEEMVFSNNPI 301 (477)
Q Consensus 225 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l 301 (477)
++|++++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999997777789999999999999999998888999999999999999999996544444 5688999999999998
Q ss_pred CCcCChhhhcCCCC--ccEEEccCCCCCCC
Q 011820 302 GGDLKSLEWKNLQN--LVILDLSNTGLAGE 329 (477)
Q Consensus 302 ~g~i~~~~~~~l~~--L~~L~Ls~n~l~~~ 329 (477)
+ .++...+..++. ++.|+|++|.+.-.
T Consensus 176 ~-~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 176 K-KLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp C-CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred C-ccCHHHhhhccHhhcceEEecCCCccCC
Confidence 8 566556666666 47788888887643
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.2e-20 Score=205.78 Aligned_cols=180 Identities=25% Similarity=0.302 Sum_probs=84.4
Q ss_pred chhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCC
Q 011820 161 IPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGL 240 (477)
Q Consensus 161 ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 240 (477)
.|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455556666666666666665 55555556666666666666666 55666666666666666666666 556666666
Q ss_pred cCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCC-CCEEEcccCCCCCcCChhhhcCCCCccEE
Q 011820 241 TSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYS-LEEMVFSNNPIGGDLKSLEWKNLQNLVIL 319 (477)
Q Consensus 241 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L 319 (477)
++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+.. +..++|++|.++|.+|. .|+.|
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l 364 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFI 364 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------cccee
Confidence 66666666666665 55655666666666666666666666655543321 12245666666555442 34445
Q ss_pred EccCC--------CCCCCchhhhcCCCCCCEEecccccCC
Q 011820 320 DLSNT--------GLAGEVPEFMAELKRLRFLGLSNNKLT 351 (477)
Q Consensus 320 ~Ls~n--------~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 351 (477)
+++.| .+.+..+..+..+.+++...+++|.+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 55544 222233333344445555555555553
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=163.90 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=81.4
Q ss_pred CCccEEEccCCCCCCCCch-hhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 144 GSLESLEFRSNPGLTGPIP-TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip-~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+.+++|++++| .+++..| ..+.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 34566666666 4554433 235566666666666666665444456666666666666666665555556666666666
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCc
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSG 279 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 279 (477)
++++|++++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 666666665555566666666666666666665555555555566666665555553
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=9.6e-19 Score=162.97 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=25.1
Q ss_pred CccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCC
Q 011820 145 SLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLN 206 (477)
Q Consensus 145 ~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~ 206 (477)
+|++|++++| .+++..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|.++
T Consensus 33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 3444444444 344333333444444444444444444333334444444444444444443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.2e-18 Score=161.56 Aligned_cols=86 Identities=24% Similarity=0.209 Sum_probs=34.0
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
++|++|+|++| .+++..|..+.++++|++|+|++|.++...+..+.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 34444444444 34443344444444444444444444322222233344444444444444333333333333333333
Q ss_pred eecccCC
Q 011820 224 LSRNSLS 230 (477)
Q Consensus 224 L~~N~l~ 230 (477)
+++|+++
T Consensus 119 Ls~N~l~ 125 (229)
T 3e6j_A 119 MCCNKLT 125 (229)
T ss_dssp CCSSCCC
T ss_pred ccCCccc
Confidence 3333333
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=2e-18 Score=157.88 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=67.6
Q ss_pred cCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcE
Q 011820 166 GHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLK 245 (477)
Q Consensus 166 ~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 245 (477)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34555666666666665 444 4555666666666666443 2234555555555555555555444555555555555
Q ss_pred EecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 246 FDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 246 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
|++++|.+++..|..+..+++|++|++++|.+.+.++ .+..+++|++|++++|.++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 5555555554444445555555555555554112222 3444444444444444443
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=2.3e-18 Score=157.41 Aligned_cols=154 Identities=14% Similarity=0.223 Sum_probs=104.1
Q ss_pred CCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCE
Q 011820 190 GRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITL 269 (477)
Q Consensus 190 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 269 (477)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45677888888888887 555 5778888888888888654 3346777888888888888887666777777788888
Q ss_pred eeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEeccccc
Q 011820 270 LDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNK 349 (477)
Q Consensus 270 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~ 349 (477)
|++++|.+++..+..+..+++|++|++++|...+.++ .+..+++|++|++++|++++ ++ .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 8888887777677777777777777777776222444 34555666666666666553 22 44555555555555555
Q ss_pred CC
Q 011820 350 LT 351 (477)
Q Consensus 350 l~ 351 (477)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 44
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=3.4e-21 Score=204.20 Aligned_cols=190 Identities=24% Similarity=0.281 Sum_probs=105.8
Q ss_pred cCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeeccc-------------CCCCCcccccCCccccEee-eecccCCC
Q 011820 166 GHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNW-------------LNGRIPDSFGYLSELLILD-LSRNSLSG 231 (477)
Q Consensus 166 ~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~N~l~~ 231 (477)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|. ..+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45666667777777665 667667777777777665553 3445555666666666666 4444321
Q ss_pred CccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhc
Q 011820 232 PLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWK 311 (477)
Q Consensus 232 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~ 311 (477)
.|+.+.+++|.++. ++. ..|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|. .+.
T Consensus 424 ----------~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGG
T ss_pred ----------hhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhh
Confidence 22223333333321 111 135556666665554 343 555566666666666655 5554 455
Q ss_pred CCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCC-hhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 312 NLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTI-SPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 312 ~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
.+++|++|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|+|++|++++..|
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 55666666666666653 44 5555666666666666666554 5556666666666666666655544
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=3e-19 Score=190.20 Aligned_cols=183 Identities=10% Similarity=0.018 Sum_probs=97.0
Q ss_pred CCCCCcEEEeecccCCCCCc-ccccCCccccEeeeecccCCC-CccccccCCcCCcEEeccc---------CcCCCCCch
Q 011820 191 RLSNLKKLVVSGNWLNGRIP-DSFGYLSELLILDLSRNSLSG-PLPLSLGGLTSLLKFDLSN---------NQLEGKIPK 259 (477)
Q Consensus 191 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~---------N~l~~~~p~ 259 (477)
.+++|++|++++|.+++... ..+..+++|++|++++| ++. .++.....+++|++|++.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 34556666666665443211 22345566666666655 221 1111222356666666622 333322222
Q ss_pred hhc-CCCCCCEeeccCCcCCccchHHhh-cCCCCCEEEcc--c----CCCCCcCCh-----hhhcCCCCccEEEccCCCC
Q 011820 260 EIG-YLKNITLLDLRNNKFSGELTKSLQ-EMYSLEEMVFS--N----NPIGGDLKS-----LEWKNLQNLVILDLSNTGL 326 (477)
Q Consensus 260 ~l~-~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~g~i~~-----~~~~~l~~L~~L~Ls~n~l 326 (477)
.+. .+++|++|.+..|.+++.....+. .+++|++|+++ + +.++ ..|. ..+..+++|++|++++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 222 366666666666666655444443 46777777777 2 3333 1111 0134556677777755 55
Q ss_pred CCCchhhhcC-CCCCCEEecccccCCCCChhhc-CCCCCCCEEEeeCCcCee
Q 011820 327 AGEVPEFMAE-LKRLRFLGLSNNKLTGTISPKL-ATMPCVSALYLNGNNLSG 376 (477)
Q Consensus 327 ~~~ip~~l~~-l~~L~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g 376 (477)
++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|++++
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 5544444444 6677777777777765544444 456677777777777643
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=2.5e-19 Score=195.48 Aligned_cols=226 Identities=17% Similarity=0.166 Sum_probs=126.3
Q ss_pred CCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCC
Q 011820 113 KHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRL 192 (477)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l 192 (477)
++++.|+|+++.+.. ++. ..|+.++|+.| .+ ..++++.|.+. ..|..+..+
T Consensus 173 ~~~~~l~L~~n~~~~------~~~-------~~l~~l~Ls~~-~i--------------~~~~~~~n~~~-~~~~~~~~l 223 (727)
T 4b8c_D 173 PLTPKIELFANGKDE------ANQ-------ALLQHKKLSQY-SI--------------DEDDDIENRMV-MPKDSKYDD 223 (727)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CccceEEeeCCCCCc------chh-------hHhhcCccCcc-cc--------------cCcccccccee-cChhhhccC
Confidence 567788887776552 222 34666677666 23 34456667766 667889999
Q ss_pred CCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeec
Q 011820 193 SNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDL 272 (477)
Q Consensus 193 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 272 (477)
+.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 99999999999998 77877889999999999999999 89999999999999999999999 88999999999999999
Q ss_pred cCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCC-CCccEEEccCCCCCCCchhhhcCCCCCCEEecccc---
Q 011820 273 RNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNL-QNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNN--- 348 (477)
Q Consensus 273 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l-~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N--- 348 (477)
++|.++ .+|..+.++++|++|+|++|.+++.+|. .+... ..+..++|++|.+++.+|. .|+.|++++|
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~ 372 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK-ILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEP 372 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH-HHHHHHHHHHHHHHHHCCCCCCCCC------C------------
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH-HHhhcchhhhHHhhccCcccCcCcc------ccceeEeeccccc
Confidence 999997 7788899999999999999999987775 33322 2233478999999998886 4566777777
Q ss_pred -----cCCCCChhhcCCCCCCCEEEeeCCcCeeec
Q 011820 349 -----KLTGTISPKLATMPCVSALYLNGNNLSGEL 378 (477)
Q Consensus 349 -----~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 378 (477)
.+.+.++..+..+..+....+++|-+.+..
T Consensus 373 ~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 373 QREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp -----------------------------CCCGGG
T ss_pred ccccCCccccccchhhcccccceeeeecccccccc
Confidence 444445555667777788899999886544
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.9e-18 Score=165.55 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=33.6
Q ss_pred ccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeee
Q 011820 146 LESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLS 225 (477)
Q Consensus 146 L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 225 (477)
++.++++.+ .+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~-~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQ-SVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCS-CTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCC-Cccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 444444444 3432 22 3444445555555555444 233 34444444444444444443222 3444444444444
Q ss_pred cccCC
Q 011820 226 RNSLS 230 (477)
Q Consensus 226 ~N~l~ 230 (477)
+|+++
T Consensus 94 ~N~l~ 98 (263)
T 1xeu_A 94 RNRLK 98 (263)
T ss_dssp SSCCS
T ss_pred CCccC
Confidence 44433
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.6e-18 Score=166.00 Aligned_cols=171 Identities=25% Similarity=0.321 Sum_probs=100.6
Q ss_pred CCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEE
Q 011820 167 HLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKF 246 (477)
Q Consensus 167 ~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 246 (477)
++.+++.+++++|.+++ ++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 34556677777777773 44 46677778888888887763 44 56677777777777777765433 6666777777
Q ss_pred ecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCC
Q 011820 247 DLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGL 326 (477)
Q Consensus 247 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l 326 (477)
++++|.+++ +|. +.. ++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-------------------------~~--~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-------------------------TD--SLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-------------------------SG--GGTTCTTCCEEECTTSCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCC-------------------------Ch--hhcCcccccEEECCCCcC
Confidence 777776653 332 122 555555555555543 22 234445555555555555
Q ss_pred CCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeee
Q 011820 327 AGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGE 377 (477)
Q Consensus 327 ~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 377 (477)
++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 141 ~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 141 KSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 432 2 345555566666666665543 4455566666666666665543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=4.9e-20 Score=195.24 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=132.3
Q ss_pred CCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCE
Q 011820 190 GRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITL 269 (477)
Q Consensus 190 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 269 (477)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|.....+|.. +..+...+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 55677888888888776 67777888888888887655410000000 0011123344455555555555
Q ss_pred ee-cc-------------CCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhc
Q 011820 270 LD-LR-------------NNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMA 335 (477)
Q Consensus 270 L~-Ls-------------~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~ 335 (477)
|+ ++ +|.++. ++ ...|+.|+|++|.+++ +|. +..+++|+.|+|++|.++ .+|..++
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred Ccchhhcccchhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccchhhh
Confidence 55 33 333332 11 1359999999999984 774 788999999999999999 8899999
Q ss_pred CCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeec-CCChhhhccccCcccccCCCCC
Q 011820 336 ELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGEL-QFSEWFYGKMGRRFGAWNNPNL 400 (477)
Q Consensus 336 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~~~~~~~~~~~~~~~~N~~l 400 (477)
.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |........+ +.+++++|+..
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L-~~L~L~~N~l~ 546 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL-VLLNLQGNSLC 546 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC-CEEECTTSGGG
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC-CEEEecCCcCC
Confidence 99999999999999996 77 8999999999999999999876 7654433333 57788888753
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.4e-17 Score=151.74 Aligned_cols=155 Identities=16% Similarity=0.282 Sum_probs=112.6
Q ss_pred cEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchH-HhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEcc
Q 011820 244 LKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTK-SLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLS 322 (477)
Q Consensus 244 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls 322 (477)
+++++++|.++ .+|..+. .+|++|++++|++++..+. .+.++++|++|+|++|.+++..|. .+..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECC
Confidence 56666666664 5555443 2677777777777655543 367778888888888888755453 67778888888888
Q ss_pred CCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCCChhhhccccCcccccCCCCCCC
Q 011820 323 NTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQFSEWFYGKMGRRFGAWNNPNLCY 402 (477)
Q Consensus 323 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~N~~lc~ 402 (477)
+|++++..+..+..+++|++|+|++|++++.+|..+..+++|++|+|++|+++|.++.. |+...+. .....++...|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~-~~~~~l~-~~~~~~~~~~C~ 164 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLR-KKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHH-HHCCSGGGCBBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch-HHHHHHH-HcCCCCCCCCCC
Confidence 88888777777888999999999999999888999999999999999999999988753 3322121 112345556676
Q ss_pred CC
Q 011820 403 PS 404 (477)
Q Consensus 403 ~~ 404 (477)
.+
T Consensus 165 ~P 166 (192)
T 1w8a_A 165 AP 166 (192)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=1.3e-18 Score=185.18 Aligned_cols=160 Identities=18% Similarity=0.091 Sum_probs=82.6
Q ss_pred CccccEeeeecccCCCCc-cccccCCcCCcEEecccCcCCC-CCchhhcCCCCCCEeec---------cCCcCCccchHH
Q 011820 216 LSELLILDLSRNSLSGPL-PLSLGGLTSLLKFDLSNNQLEG-KIPKEIGYLKNITLLDL---------RNNKFSGELTKS 284 (477)
Q Consensus 216 l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L---------s~N~l~~~~p~~ 284 (477)
+++|++|++++|.+++.. +..+..+++|++|++++| ++. .++.....+++|++|++ ..+.+++.....
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 344555555554433221 112334455555555544 221 11112223555555555 223343322222
Q ss_pred hh-cCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEcc--C----CCCCC-----CchhhhcCCCCCCEEecccccCCC
Q 011820 285 LQ-EMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLS--N----TGLAG-----EVPEFMAELKRLRFLGLSNNKLTG 352 (477)
Q Consensus 285 l~-~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls--~----n~l~~-----~ip~~l~~l~~L~~L~Ls~N~l~g 352 (477)
+. .+++|++|.++.|.+++.........+++|++|+++ + +.+++ .++..+..+++|+.|++++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 22 356666666666665533222122246777777777 3 44542 1233356677788888866 6666
Q ss_pred CChhhcCC-CCCCCEEEeeCCcCeee
Q 011820 353 TISPKLAT-MPCVSALYLNGNNLSGE 377 (477)
Q Consensus 353 ~ip~~l~~-l~~L~~L~Ls~N~l~g~ 377 (477)
..+..+.. +++|++|+|++|.+++.
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred HHHHHHHHhchhccEeeccCCCCcHH
Confidence 55555555 78889999998888654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.5e-16 Score=141.31 Aligned_cols=132 Identities=22% Similarity=0.260 Sum_probs=57.9
Q ss_pred CCCcEEEeecccCC-CCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEee
Q 011820 193 SNLKKLVVSGNWLN-GRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLD 271 (477)
Q Consensus 193 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 271 (477)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.. +++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------l~~L~~L~ 77 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------LPKLKKLE 77 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC------------------------CSSCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc------------------------CCCCCEEE
Confidence 44555555555554 44444444444444444444444432 33333 44444444
Q ss_pred ccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCCh-hhhcCCCCccEEEccCCCCCCCch---hhhcCCCCCCEEeccc
Q 011820 272 LRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKS-LEWKNLQNLVILDLSNTGLAGEVP---EFMAELKRLRFLGLSN 347 (477)
Q Consensus 272 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~-~~~~~l~~L~~L~Ls~n~l~~~ip---~~l~~l~~L~~L~Ls~ 347 (477)
+++|.+++.+|..+.++++|++|++++|.+++ ++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 44444443333333344444444444444432 111 133344444444444444443322 2444455555555555
Q ss_pred ccCC
Q 011820 348 NKLT 351 (477)
Q Consensus 348 N~l~ 351 (477)
|.+.
T Consensus 157 n~~~ 160 (168)
T 2ell_A 157 REDQ 160 (168)
T ss_dssp TTSC
T ss_pred CChh
Confidence 5444
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.4e-16 Score=141.51 Aligned_cols=132 Identities=22% Similarity=0.190 Sum_probs=69.3
Q ss_pred CCCcEEEcccCCCC-CccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEe
Q 011820 169 MKLRSLVLLENGLS-GELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFD 247 (477)
Q Consensus 169 ~~L~~L~Ls~n~l~-~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 247 (477)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555555554 44444444555555555555555433 4445555555555555555544444444455555555
Q ss_pred cccCcCCCCC-chhhcCCCCCCEeeccCCcCCccch---HHhhcCCCCCEEEcccCCCC
Q 011820 248 LSNNQLEGKI-PKEIGYLKNITLLDLRNNKFSGELT---KSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 248 L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555321 1445556666666666666554333 35555666666666666554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.1e-16 Score=145.68 Aligned_cols=129 Identities=26% Similarity=0.403 Sum_probs=61.8
Q ss_pred cEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcc-cccCCccccEeeeecccCCCCccccccCCcCCcEEeccc
Q 011820 172 RSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPD-SFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSN 250 (477)
Q Consensus 172 ~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 250 (477)
+++++++|+++ .+|..+.. +|++|++++|.+++..+. .+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34444444443 34443322 455555555555433332 244455555555555555544444455555555555555
Q ss_pred CcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCC
Q 011820 251 NQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGG 303 (477)
Q Consensus 251 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 303 (477)
|.+++..+..+.++++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55554444444455555555555555554444444444444444444444443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.2e-16 Score=138.91 Aligned_cols=84 Identities=25% Similarity=0.319 Sum_probs=39.2
Q ss_pred CCccEEEccCCCCCC-CCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 144 GSLESLEFRSNPGLT-GPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~-g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
++|++|++++| .++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555 344 44444444555555555555554432 334444444444444444444344444444444444
Q ss_pred eeecccCC
Q 011820 223 DLSRNSLS 230 (477)
Q Consensus 223 ~L~~N~l~ 230 (477)
++++|.++
T Consensus 94 ~ls~N~i~ 101 (149)
T 2je0_A 94 NLSGNKIK 101 (149)
T ss_dssp ECTTSCCC
T ss_pred ECCCCcCC
Confidence 44444443
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=4.3e-16 Score=139.62 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=105.4
Q ss_pred CcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEcc
Q 011820 243 LLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLS 322 (477)
Q Consensus 243 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls 322 (477)
.+.+++++|.++ .+|..+ .++|++|++++|++++..+..+.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 456666666665 445433 357788888888877666666778888888888888887 4554467788999999999
Q ss_pred CCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCC
Q 011820 323 NTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQF 380 (477)
Q Consensus 323 ~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 380 (477)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 9999977777788999999999999999966565678899999999999999998873
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.1e-16 Score=139.16 Aligned_cols=129 Identities=22% Similarity=0.212 Sum_probs=108.2
Q ss_pred CCCCcEEEcccCCCC-CccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEE
Q 011820 168 LMKLRSLVLLENGLS-GELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKF 246 (477)
Q Consensus 168 l~~L~~L~Ls~n~l~-~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 246 (477)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467889999999988 78888888899999999999988865 678888999999999999987788888888999999
Q ss_pred ecccCcCCCC-CchhhcCCCCCCEeeccCCcCCccch---HHhhcCCCCCEEEccc
Q 011820 247 DLSNNQLEGK-IPKEIGYLKNITLLDLRNNKFSGELT---KSLQEMYSLEEMVFSN 298 (477)
Q Consensus 247 ~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~ 298 (477)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998863 34778889999999999998886655 5788889999988864
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.1e-16 Score=156.10 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=100.3
Q ss_pred CCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeeccc----CCCCccccccCCcCC
Q 011820 168 LMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNS----LSGPLPLSLGGLTSL 243 (477)
Q Consensus 168 l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~----l~~~~p~~l~~l~~L 243 (477)
+++|++|+|.+ .++..-+..|.++++|+.|++++|.+....+..|..+.++..+.+..+. ....-...+.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666666 5553333455666666666666666554444555555555544443311 111112233344444
Q ss_pred c-EEecccCcCCCCCchhhc----CCCCCCEeeccCCcCCccchHHh-hcCCCCCEEEcccCCCCCcCChhhhcCCCCcc
Q 011820 244 L-KFDLSNNQLEGKIPKEIG----YLKNITLLDLRNNKFSGELTKSL-QEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLV 317 (477)
Q Consensus 244 ~-~L~L~~N~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~ 317 (477)
+ .+.+... +.++..+. ...+++.+.+.++-.. .....+ ..+++|+.++|++|.++ .++...|.++++|+
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLL 253 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCC
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCC
Confidence 4 2322211 12222111 2334444444433211 111112 23566666666666665 56655666666666
Q ss_pred EEEccCCCCCCCchhhhcCCCCCC-EEecccccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 318 ILDLSNTGLAGEVPEFMAELKRLR-FLGLSNNKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 318 ~L~Ls~n~l~~~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
.++|.+| ++...+..|.++++|+ .+++.+ +++..-+.+|..+++|+.+++++|+++
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 6666665 5544445566666666 666666 555344455666666666666666665
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=139.34 Aligned_cols=132 Identities=28% Similarity=0.361 Sum_probs=106.3
Q ss_pred cEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccC
Q 011820 244 LKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSN 323 (477)
Q Consensus 244 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~ 323 (477)
+++++++|.++ .+|..+ .++|++|++++|.++ .+|..+.++++|++|+|++|.++ .++...|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 45666666666 555543 257788888888877 56677888888888888888887 44444688889999999999
Q ss_pred CCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecCC
Q 011820 324 TGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQF 380 (477)
Q Consensus 324 n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 380 (477)
|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++.+.++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 999988888899999999999999999966666788999999999999999988764
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=4.7e-15 Score=132.80 Aligned_cols=110 Identities=25% Similarity=0.238 Sum_probs=43.9
Q ss_pred CCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecc
Q 011820 170 KLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLS 249 (477)
Q Consensus 170 ~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 249 (477)
+|++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 33444444444432222233334444444444444443333333344444444444444443333333444444444444
Q ss_pred cCcCCCCCchhhcCCCCCCEeeccCCcCCc
Q 011820 250 NNQLEGKIPKEIGYLKNITLLDLRNNKFSG 279 (477)
Q Consensus 250 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 279 (477)
+|.+++..+..+..+++|++|++++|.+++
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 444442222223344444444444444443
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=135.97 Aligned_cols=83 Identities=31% Similarity=0.454 Sum_probs=31.9
Q ss_pred CcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccC
Q 011820 195 LKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRN 274 (477)
Q Consensus 195 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 274 (477)
|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 33 l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 344444444333 2333333333444444444433333333333333333333333333333333333333333343333
Q ss_pred CcCC
Q 011820 275 NKFS 278 (477)
Q Consensus 275 N~l~ 278 (477)
|.++
T Consensus 112 N~l~ 115 (193)
T 2wfh_A 112 NDIS 115 (193)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 3333
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=4.1e-17 Score=149.19 Aligned_cols=145 Identities=22% Similarity=0.294 Sum_probs=100.9
Q ss_pred CccEEEccCCCCCCCCch------hhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCcc
Q 011820 145 SLESLEFRSNPGLTGPIP------TSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSE 218 (477)
Q Consensus 145 ~L~~L~Ls~n~~l~g~ip------~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 218 (477)
.++.++++.+ .++|.+| ..+.++++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++
T Consensus 19 ~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 4444444444 3444444 377788888888888888875 66 6777888888888888887 56766677778
Q ss_pred ccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCc-hhhcCCCCCCEeeccCCcCCccchH----------Hhhc
Q 011820 219 LLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIP-KEIGYLKNITLLDLRNNKFSGELTK----------SLQE 287 (477)
Q Consensus 219 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~ 287 (477)
|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|. .+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 8888888888875 44 57777788888888888774222 3677778888888888877665443 2566
Q ss_pred CCCCCEEE
Q 011820 288 MYSLEEMV 295 (477)
Q Consensus 288 l~~L~~L~ 295 (477)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 66666665
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.6e-15 Score=149.78 Aligned_cols=260 Identities=15% Similarity=0.143 Sum_probs=164.9
Q ss_pred cccchhccC--CCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCC
Q 011820 103 VEFREQLFE--LKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENG 180 (477)
Q Consensus 103 g~i~~~l~~--l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~ 180 (477)
|.++..+.. +.+++.|.++++-- ......+...+++|++|||++| .+.. ....-+.++.++.+.+..|.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~i~-------~~~~~~l~~~l~~L~~LdLs~n-~i~~-~~~~~~~~~~~~~~~~~~~~ 83 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGKLN-------AEDFRHLRDEFPSLKVLDISNA-EIKM-YSGKAGTYPNGKFYIYMANF 83 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEEEC-------HHHHHHHHHSCTTCCEEEEEEE-EECC-EEESSSSSGGGCCEEECTTE
T ss_pred CcHHhhccchhhCceeEEEEecccc-------HHHHHHHHHhhccCeEEecCcc-eeEE-ecCccccccccccccccccc
Confidence 555555543 77888999886321 1111122332578999999988 4551 00011122224455555553
Q ss_pred CCCccchhcCC--------CCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCc
Q 011820 181 LSGELPTNLGR--------LSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQ 252 (477)
Q Consensus 181 l~~~ip~~l~~--------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 252 (477)
+. +..|.+ +++|+.|+|.+ .++..-+.+|.++++|+.+++.+|.+....+..|..+.++..+.+..+.
T Consensus 84 I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~ 159 (329)
T 3sb4_A 84 VP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD 159 (329)
T ss_dssp EC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH
T ss_pred cC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchh
Confidence 22 234555 89999999988 7775556778889999999999998876667778887777777665532
Q ss_pred ----CCCCCchhhcCCCCCC-EeeccCCcCCccchHHhh----cCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccC
Q 011820 253 ----LEGKIPKEIGYLKNIT-LLDLRNNKFSGELTKSLQ----EMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSN 323 (477)
Q Consensus 253 ----l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~----~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~ 323 (477)
....-...+.++..|+ .+.+... +.++..+. ...+++.+.+.++-...... .....+++|+.++|++
T Consensus 160 ~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 160 AYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFK-LIRDYMPNLVSLDISK 235 (329)
T ss_dssp HHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH-HHHHHCTTCCEEECTT
T ss_pred hhhccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHH-HHHHhcCCCeEEECCC
Confidence 1212223455566666 4444432 23443332 34567777777652211111 1112479999999999
Q ss_pred CCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCC-EEEeeCCcCeeecCCCh
Q 011820 324 TGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVS-ALYLNGNNLSGELQFSE 382 (477)
Q Consensus 324 n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~~ 382 (477)
|+++...+..|.++++|+.++|.+| ++..-+.+|..+++|+ .+++.+ +++ .|+...
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~a 292 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGA 292 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTT
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhh
Confidence 9999666677999999999999998 7755566799999999 999998 665 565443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=4.3e-17 Score=149.04 Aligned_cols=108 Identities=26% Similarity=0.292 Sum_probs=52.6
Q ss_pred cCCCCCcEEEcccCCCCCccch------hcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccC
Q 011820 166 GHLMKLRSLVLLENGLSGELPT------NLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGG 239 (477)
Q Consensus 166 ~~l~~L~~L~Ls~n~l~~~ip~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 239 (477)
.....++.++++.+.++|.+|. .+.++++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445555556666655555444 45555555555555555553 33 4445555555555555554 34444444
Q ss_pred CcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCC
Q 011820 240 LTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFS 278 (477)
Q Consensus 240 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 278 (477)
+++|++|++++|.+++ +| .+..+++|++|++++|+++
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC
Confidence 4444444444444442 22 2334444444444444443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=9.6e-15 Score=130.71 Aligned_cols=132 Identities=21% Similarity=0.271 Sum_probs=84.4
Q ss_pred cCCcCCcEEecccCcCCCCCchhhcCC-CCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCc
Q 011820 238 GGLTSLLKFDLSNNQLEGKIPKEIGYL-KNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNL 316 (477)
Q Consensus 238 ~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L 316 (477)
.++++|++|++++|.++ .+|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.++ .++...+..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 34555556666665555 2333 3333 3666666666666643 35566666777777777666 3443344667777
Q ss_pred cEEEccCCCCCCCchh--hhcCCCCCCEEecccccCCCCChhh----cCCCCCCCEEEeeCCcCee
Q 011820 317 VILDLSNTGLAGEVPE--FMAELKRLRFLGLSNNKLTGTISPK----LATMPCVSALYLNGNNLSG 376 (477)
Q Consensus 317 ~~L~Ls~n~l~~~ip~--~l~~l~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~g 376 (477)
++|++++|+++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++||+++|....
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77777777775 4554 6777788888888888887 45553 7778888888888887653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.2e-14 Score=130.07 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=56.7
Q ss_pred CCCCCcEEEcccCCCCCccchhcCCCC-CCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcE
Q 011820 167 HLMKLRSLVLLENGLSGELPTNLGRLS-NLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLK 245 (477)
Q Consensus 167 ~l~~L~~L~Ls~n~l~~~ip~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 245 (477)
++++|++|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3444444444444444 2222 22222 444444444444432 33444444444444444444322222244444555
Q ss_pred EecccCcCCCCCch--hhcCCCCCCEeeccCCcCCccchH----HhhcCCCCCEEEcccCCC
Q 011820 246 FDLSNNQLEGKIPK--EIGYLKNITLLDLRNNKFSGELTK----SLQEMYSLEEMVFSNNPI 301 (477)
Q Consensus 246 L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l 301 (477)
|++++|.++ .+|. .+..+++|++|++++|.++ .+|. .+..+++|++|+++.|..
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555443 3333 4444555555555555544 2222 244455555555555443
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=3.6e-13 Score=136.56 Aligned_cols=216 Identities=11% Similarity=0.102 Sum_probs=89.9
Q ss_pred CccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeee
Q 011820 145 SLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDL 224 (477)
Q Consensus 145 ~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 224 (477)
+|+.+++.. .++..-+..|.++++|+.++++.|+++ .++.....+.+|+.+.+..+ ++..-...|.++++|+.+++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 455555543 133222234445555555555555544 33332222345555555432 33233334445555555555
Q ss_pred ecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCC-----ccchHHhhcCCCCCEEEcccC
Q 011820 225 SRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFS-----GELTKSLQEMYSLEEMVFSNN 299 (477)
Q Consensus 225 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N 299 (477)
..+ ++..-..+|.+ .+|+.+.+. +.++..-..+|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 432 22222223333 445555552 2233222334444555555555444332 12223444444555555442
Q ss_pred CCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCC-CCCEEEeeC
Q 011820 300 PIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMP-CVSALYLNG 371 (477)
Q Consensus 300 ~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~L~Ls~ 371 (477)
.+. .++...|.++.+|+.+.|..+ ++..-+.+|.++ +|+.+++++|.+....+..+..++ .+..|.+..
T Consensus 310 ~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 310 SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 232 333344444445555554332 332333344444 455555554444432233333332 344444433
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=4.6e-13 Score=119.17 Aligned_cols=105 Identities=25% Similarity=0.307 Sum_probs=49.3
Q ss_pred ccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeee
Q 011820 146 LESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLS 225 (477)
Q Consensus 146 L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 225 (477)
.+++++++| .++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n-~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 345555555 344 2443332 445555555555554444445555555555555555554444444444445555554
Q ss_pred cccCCCCccccccCCcCCcEEecccCcCC
Q 011820 226 RNSLSGPLPLSLGGLTSLLKFDLSNNQLE 254 (477)
Q Consensus 226 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 254 (477)
+|++++..+..+..+++|++|++++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 44444333333444444444444444443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=5.2e-13 Score=118.82 Aligned_cols=87 Identities=23% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEee
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILD 223 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 223 (477)
++|++|+|++| .+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 45555555555 45555555555555555555555555543333445555555555555555544444455555555555
Q ss_pred eecccCCC
Q 011820 224 LSRNSLSG 231 (477)
Q Consensus 224 L~~N~l~~ 231 (477)
+++|.++.
T Consensus 109 L~~N~~~c 116 (170)
T 3g39_A 109 LLNNPWDC 116 (170)
T ss_dssp CCSSCBCT
T ss_pred eCCCCCCC
Confidence 55555543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=9.5e-13 Score=117.61 Aligned_cols=104 Identities=25% Similarity=0.292 Sum_probs=47.3
Q ss_pred cEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeec
Q 011820 147 ESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSR 226 (477)
Q Consensus 147 ~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 226 (477)
+.+++++| .++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n-~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555554 343 3444332 4455555555555544444444555555555555554443333344444444444444
Q ss_pred ccCCCCccccccCCcCCcEEecccCcCC
Q 011820 227 NSLSGPLPLSLGGLTSLLKFDLSNNQLE 254 (477)
Q Consensus 227 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 254 (477)
|++++..+..+..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 4444333333444444444444444443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1e-12 Score=117.33 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=66.1
Q ss_pred CEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCC
Q 011820 116 KSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNL 195 (477)
Q Consensus 116 ~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L 195 (477)
+.++++++.+. .+|... .++|++|+|++| .+++..|..|.++++|++|+|++|++++..+..|.++++|
T Consensus 15 ~~l~~~~n~l~------~iP~~~----~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLA------SVPAGI----PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCS------SCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCCC------ccCCCc----CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 56666666654 455432 256677777766 5666666666667777777777777664333345666677
Q ss_pred cEEEeecccCCCCCcccccCCccccEeeeecccCCC
Q 011820 196 KKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSG 231 (477)
Q Consensus 196 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 231 (477)
++|+|++|++++..+..|..+++|++|++++|.+..
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 777777777665544456666677777777766653
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=8e-12 Score=126.58 Aligned_cols=243 Identities=12% Similarity=0.110 Sum_probs=178.5
Q ss_pred CCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCC
Q 011820 112 LKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGR 191 (477)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~ 191 (477)
+..++.+.+.+. +. .|+...|.. .+|+.+++..+ ++..-..+|.+ .+|+.+.+.. .++..-+..|.+
T Consensus 112 ~~~l~~i~ip~~-i~------~I~~~aF~~--~~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~ 178 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK------SIPKDAFRN--SQIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYY 178 (401)
T ss_dssp CSSCSEEECCTT-CC------EECTTTTTT--CCCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTT
T ss_pred cCCccEEEECCc-cC------EehHhhccc--CCccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhC
Confidence 466777777543 22 566666665 37999998765 55343455666 4799999986 666444567889
Q ss_pred CCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEee
Q 011820 192 LSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLD 271 (477)
Q Consensus 192 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 271 (477)
+++|+.+++.+|.++......|. ..+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-..+|.+ .+|+.+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 99999999999988854445555 689999999744 66555678889999999999875 44333455666 7899999
Q ss_pred ccCCcCCccchHHhhcCCCCCEEEcccCCCC----CcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEeccc
Q 011820 272 LRNNKFSGELTKSLQEMYSLEEMVFSNNPIG----GDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSN 347 (477)
Q Consensus 272 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~----g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~ 347 (477)
+. +.++..-...|.++++|+.+++.+|.+. ..++...|.++++|+.+++. +.++..-...|.++++|+.++|..
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc
Confidence 84 4466455678889999999999887664 13666788889999999998 457655567788899999999965
Q ss_pred ccCCCCChhhcCCCCCCCEEEeeCCcCe
Q 011820 348 NKLTGTISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 348 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
| ++..-+.+|.++ +|+.+++++|.+.
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 5 664455678888 8999999998765
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=5.4e-14 Score=141.18 Aligned_cols=187 Identities=20% Similarity=0.183 Sum_probs=92.7
Q ss_pred CCCCcEEEcccCCCCCccchhc----C-CCCCCcEEEeecccCCCCCcccc-cCCccccEeeeecccCCCCccccccCCc
Q 011820 168 LMKLRSLVLLENGLSGELPTNL----G-RLSNLKKLVVSGNWLNGRIPDSF-GYLSELLILDLSRNSLSGPLPLSLGGLT 241 (477)
Q Consensus 168 l~~L~~L~Ls~n~l~~~ip~~l----~-~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 241 (477)
+++|++|+|++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L---- 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL---- 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH----
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH----
Confidence 3467778888877764333322 2 22567777777776653222221 223445555555555442221111
Q ss_pred CCcEEecccCcCCCCCchhh-cCCCCCCEeeccCCcCCc----cchHHhhcCCCCCEEEcccCCCCCc----CChhhhcC
Q 011820 242 SLLKFDLSNNQLEGKIPKEI-GYLKNITLLDLRNNKFSG----ELTKSLQEMYSLEEMVFSNNPIGGD----LKSLEWKN 312 (477)
Q Consensus 242 ~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~----i~~~~~~~ 312 (477)
...+ ...++|++|+|++|.++. .++..+..+++|++|+|++|.+++. +. ..+..
T Consensus 147 ----------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~-~~L~~ 209 (372)
T 3un9_A 147 ----------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA-AQLDR 209 (372)
T ss_dssp ----------------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH-HHGGG
T ss_pred ----------------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH-HHHhc
Confidence 1111 124455566666655542 2333445556666666666665421 11 12344
Q ss_pred CCCccEEEccCCCCCCC----chhhhcCCCCCCEEecccccCCCCChhhcCCC---CC--CCEEE--eeCCcCe
Q 011820 313 LQNLVILDLSNTGLAGE----VPEFMAELKRLRFLGLSNNKLTGTISPKLATM---PC--VSALY--LNGNNLS 375 (477)
Q Consensus 313 l~~L~~L~Ls~n~l~~~----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l---~~--L~~L~--Ls~N~l~ 375 (477)
.++|++|+|++|.+++. ++..+...++|++|+|++|.|++.....+..+ .. |+.+. +..|.++
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 55677777777766542 33344456777777777777775444443322 11 55555 5555554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=7.1e-14 Score=140.33 Aligned_cols=159 Identities=21% Similarity=0.171 Sum_probs=96.3
Q ss_pred CCCccEEEccCCCCCCCCchhhhc-----CCCCCcEEEcccCCCCCccchhcC-CCCCCcEEEeecccCCCCCcccc---
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLG-----HLMKLRSLVLLENGLSGELPTNLG-RLSNLKKLVVSGNWLNGRIPDSF--- 213 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~-----~l~~L~~L~Ls~n~l~~~ip~~l~-~l~~L~~L~L~~n~l~~~~p~~l--- 213 (477)
.++|++|+|++| .++......+. ..++|++|+|++|.++......+. .+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 578999999999 68764444433 237999999999999754443332 45789999999999875433333
Q ss_pred --cCCccccEeeeecccCCCC----ccccccCCcCCcEEecccCcCCCC----CchhhcCCCCCCEeeccCCcCCcc---
Q 011820 214 --GYLSELLILDLSRNSLSGP----LPLSLGGLTSLLKFDLSNNQLEGK----IPKEIGYLKNITLLDLRNNKFSGE--- 280 (477)
Q Consensus 214 --~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~--- 280 (477)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|++|+|++|.++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2356677777777776532 333344555666666666655421 233344445555555555555431
Q ss_pred -chHHhhcCCCCCEEEcccCCCC
Q 011820 281 -LTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 281 -~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+...+...++|++|+|++|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 2233334444555555555443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=6.6e-12 Score=124.48 Aligned_cols=107 Identities=23% Similarity=0.261 Sum_probs=72.5
Q ss_pred EeeccCC-cCCccchHHhhcCCCCCEEEccc-CCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecc
Q 011820 269 LLDLRNN-KFSGELTKSLQEMYSLEEMVFSN-NPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLS 346 (477)
Q Consensus 269 ~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls 346 (477)
.++++++ .++ .+|. +..+++|++|+|++ |.++ .++...|..+++|++|+|++|+|++..|..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455555 555 3555 66666666666664 6665 3444456677777777777777777777777778888888888
Q ss_pred cccCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 347 NNKLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 347 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
+|+|++..+..+..++ |+.|+|++|+|.+.++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 8888754444455444 8888888888877665
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=2.6e-11 Score=120.21 Aligned_cols=105 Identities=26% Similarity=0.275 Sum_probs=82.7
Q ss_pred EEEccCCCCCCCCchhhhcCCCCCcEEEccc-CCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeec
Q 011820 148 SLEFRSNPGLTGPIPTSLGHLMKLRSLVLLE-NGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSR 226 (477)
Q Consensus 148 ~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~-n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 226 (477)
.++++++..++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45776653466 4787 88888888888885 888866667788888888888888888888888888888888888888
Q ss_pred ccCCCCccccccCCcCCcEEecccCcCCC
Q 011820 227 NSLSGPLPLSLGGLTSLLKFDLSNNQLEG 255 (477)
Q Consensus 227 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 255 (477)
|++++..+..+..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888865555555555 8888888888774
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=1.5e-10 Score=115.31 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=99.7
Q ss_pred CCCcEEEcccCCCCC-c-------cchhcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCC
Q 011820 169 MKLRSLVLLENGLSG-E-------LPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGL 240 (477)
Q Consensus 169 ~~L~~L~Ls~n~l~~-~-------ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 240 (477)
..++.|.+......+ . +.+++..+++|+.|.+..+..... .+ +... .+.+...+..+
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~---~i-----------s~~~-~~~L~~ll~~~ 171 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ---EI-----------SWIE-QVDLSPVLDAM 171 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTC---CG-----------GGCB-CCBCHHHHHTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhc---cc-----------cccc-ccCHHHHHhcC
Confidence 356677777555442 1 123344567777777765432100 00 0000 01222333445
Q ss_pred cCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhh--cCCCCCEEEccc--CCCCCc--C---Ch-hhh
Q 011820 241 TSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQ--EMYSLEEMVFSN--NPIGGD--L---KS-LEW 310 (477)
Q Consensus 241 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~g~--i---~~-~~~ 310 (477)
++|+.|++++|.-. .++. + .+++|+.|++..+.++......+. .+++|++|+|+. |...+. + .. ...
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 55555555554211 1222 2 255666666666665543333343 566677766642 111111 1 11 011
Q ss_pred cCCCCccEEEccCCCCCCCchhhhc---CCCCCCEEecccccCCCC----ChhhcCCCCCCCEEEeeCCcCee
Q 011820 311 KNLQNLVILDLSNTGLAGEVPEFMA---ELKRLRFLGLSNNKLTGT----ISPKLATMPCVSALYLNGNNLSG 376 (477)
Q Consensus 311 ~~l~~L~~L~Ls~n~l~~~ip~~l~---~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g 376 (477)
..+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 2467888888888887654444433 467888888888888764 33334456788888888887763
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=2e-10 Score=114.55 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=108.4
Q ss_pred CCccEEEccCCCCCCC-C-------chhhhcCCCCCcEEEcccCCCC---------CccchhcCCCCCCcEEEeecccCC
Q 011820 144 GSLESLEFRSNPGLTG-P-------IPTSLGHLMKLRSLVLLENGLS---------GELPTNLGRLSNLKKLVVSGNWLN 206 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g-~-------ip~~l~~l~~L~~L~Ls~n~l~---------~~ip~~l~~l~~L~~L~L~~n~l~ 206 (477)
.+++.|.+... ...| . +..++.++++|+.|.+...... +.++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~-~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXW-GYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCC-CSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEccc-ccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 46888988866 4553 2 2334567889999999765331 123344455666677766665211
Q ss_pred CCCcccccCCccccEeeeecccCCCCcccccc--CCcCCcEEeccc--CcCCCCCchhhcCCCCCCEeeccCCcCCccch
Q 011820 207 GRIPDSFGYLSELLILDLSRNSLSGPLPLSLG--GLTSLLKFDLSN--NQLEGKIPKEIGYLKNITLLDLRNNKFSGELT 282 (477)
Q Consensus 207 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~--N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 282 (477)
.++. + .+++|++|++..+.++......+. .+++|++|+|+. |...+... +. .+.
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~------------------~~-~l~ 243 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD------------------MN-VFR 243 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC------------------GG-GTG
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh------------------HH-HHH
Confidence 1222 2 245555555555544322222222 345555555432 11110000 00 000
Q ss_pred HHh--hcCCCCCEEEcccCCCCCcCChhhh--cCCCCccEEEccCCCCCCCc----hhhhcCCCCCCEEecccccCCCCC
Q 011820 283 KSL--QEMYSLEEMVFSNNPIGGDLKSLEW--KNLQNLVILDLSNTGLAGEV----PEFMAELKRLRFLGLSNNKLTGTI 354 (477)
Q Consensus 283 ~~l--~~l~~L~~L~Ls~N~l~g~i~~~~~--~~l~~L~~L~Ls~n~l~~~i----p~~l~~l~~L~~L~Ls~N~l~g~i 354 (477)
..+ ..+++|++|+|.+|.+.+....... ..+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 2356677777766665432221111 23577888888888877543 333345688999999998887654
Q ss_pred hhhcCC-CCCCCEEEeeCCc
Q 011820 355 SPKLAT-MPCVSALYLNGNN 373 (477)
Q Consensus 355 p~~l~~-l~~L~~L~Ls~N~ 373 (477)
-..+.. + ...+++++++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 444443 2 3567888776
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.93 E-value=1.3e-08 Score=102.60 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=38.8
Q ss_pred hhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCC
Q 011820 285 LQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCV 364 (477)
Q Consensus 285 l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 364 (477)
+..+.+|+.+.+..+ +. .+....|.++.+|+.+++.++ ++..-..+|.++++|+.+++..+ ++..-..+|.++++|
T Consensus 293 F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 334445555555433 22 344444555555555555432 33233344555555555555544 332223345555555
Q ss_pred CEEEee
Q 011820 365 SALYLN 370 (477)
Q Consensus 365 ~~L~Ls 370 (477)
+.+++.
T Consensus 369 ~~i~lp 374 (394)
T 4fs7_A 369 KKVELP 374 (394)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 555554
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.87 E-value=2.5e-08 Score=100.51 Aligned_cols=210 Identities=11% Similarity=0.063 Sum_probs=134.3
Q ss_pred CCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchhcCCCCCCcEEEeecccCCCCCcccccCCccccEe
Q 011820 143 AGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTNLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLIL 222 (477)
Q Consensus 143 ~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 222 (477)
+.+|+.+++..+ ++..-...+.++..|+.+.+..+.. .+........+|+.+.+..+ ++..-...+..+..|+.+
T Consensus 184 c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 184 CGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESI 258 (394)
T ss_dssp CTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEE
T ss_pred CCCceEEEcCCC--ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCC-ceecccccccccccceeE
Confidence 345555555433 2222223445555555555544332 12233334456666666543 222223456667777777
Q ss_pred eeecccCCCCccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCC
Q 011820 223 DLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 223 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
.+..+... .....+..+..++.+....+.+. ...+..+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++
T Consensus 259 ~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 259 SIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp EECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred EcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 77665432 34456677777777777665432 235678889999998765 55444567889999999999754 54
Q ss_pred CcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEE
Q 011820 303 GDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSAL 367 (477)
Q Consensus 303 g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L 367 (477)
.+....|.++.+|+.+++..+ ++..-..+|.++++|+.+++..+ ++ .+...+.++++|+.+
T Consensus 333 -~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 333 -EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred -EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 677778999999999999876 66555678999999999999865 33 345678888877764
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.83 E-value=1.2e-07 Score=95.60 Aligned_cols=251 Identities=10% Similarity=0.127 Sum_probs=138.4
Q ss_pred hccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccch
Q 011820 108 QLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPT 187 (477)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~ 187 (477)
++.++++|+.+.+..+.-.. ...|+...|.. +.+|+.+.+..+ ++..-...+.++.+|+.+.+..+. ...-..
T Consensus 82 AF~~C~~L~~i~~~~n~p~~---l~~Ig~~aF~~-c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~ 154 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSC---VKKIGRQAFMF-CSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEGV-TSVADG 154 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCC---CCEECTTTTTT-CTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTTC-CEECTT
T ss_pred HhhCCccCceEeecCCCCCe---eeEechhhchh-cccceeeccCCc--cceehhhhhhhhccccccccccee-eeeccc
Confidence 45677888888876543110 01344444433 455665555433 332223345566667766665432 212233
Q ss_pred hcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCc---------------
Q 011820 188 NLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQ--------------- 252 (477)
Q Consensus 188 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~--------------- 252 (477)
.+.++.+|+.+.+..+ ++..-...|. ..+|+.+.+..+.. ..-...+..+.+++......+.
T Consensus 155 ~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (394)
T 4gt6_A 155 MFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANG 231 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTS
T ss_pred ceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccc
Confidence 4555666666666543 2211122232 23455555433211 1122233334344333322111
Q ss_pred ---------------------CCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhc
Q 011820 253 ---------------------LEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWK 311 (477)
Q Consensus 253 ---------------------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~ 311 (477)
++..-..+|.++..|+.+.+..+..+ .-...+.+++.|+.+.+.. .+. .++...|.
T Consensus 232 ~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~ 308 (394)
T 4gt6_A 232 DYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFA 308 (394)
T ss_dssp CEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTT
T ss_pred cccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeec
Confidence 11111234667778888887655332 3345677788888888853 344 56667788
Q ss_pred CCCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCc
Q 011820 312 NLQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNN 373 (477)
Q Consensus 312 ~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 373 (477)
++.+|+.++|..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.+|.
T Consensus 309 ~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 309 GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 8888888888754 55444567888888888888654 553445678888888888888764
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.69 E-value=3.6e-07 Score=92.01 Aligned_cols=245 Identities=7% Similarity=0.101 Sum_probs=144.1
Q ss_pred ccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccchh
Q 011820 109 LFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPTN 188 (477)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~~ 188 (477)
+..+.+|+.+.+..+- . .|+...|.. +.+|+.+.+..+ +...-...+..+.+|+.+.+..+ ++ .+...
T Consensus 110 F~~c~~L~~i~~~~~~-~------~I~~~aF~~-c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~ 177 (394)
T 4gt6_A 110 FMFCSELTDIPILDSV-T------EIDSEAFHH-CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VT-AIEER 177 (394)
T ss_dssp TTTCTTCCBCGGGTTC-S------EECTTTTTT-CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred chhcccceeeccCCcc-c------eehhhhhhh-hcccccccccce--eeeecccceecccccccccccce-ee-Eeccc
Confidence 4456666666554331 1 344444433 567777777543 33222345666777777777544 22 22222
Q ss_pred cCCCCCCcEEEeecccCCCCCcccccCCccccEeeeecc------------------------------------cCCCC
Q 011820 189 LGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSRN------------------------------------SLSGP 232 (477)
Q Consensus 189 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N------------------------------------~l~~~ 232 (477)
.....+|+.+.+..+-.. .-...|..+.+++......+ .+...
T Consensus 178 aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i 256 (394)
T 4gt6_A 178 AFTGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARI 256 (394)
T ss_dssp TTTTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEE
T ss_pred cccccceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEc
Confidence 222345666655443211 12223333333333322211 11111
Q ss_pred ccccccCCcCCcEEecccCcCCCCCchhhcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcC
Q 011820 233 LPLSLGGLTSLLKFDLSNNQLEGKIPKEIGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKN 312 (477)
Q Consensus 233 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~ 312 (477)
-..+|.++..|+.+.+.++... .-...+.++++|+.+.+.. .++..-...|.++.+|+.+++..+ ++ .+....|.+
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~ 332 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAG 332 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhC
Confidence 2345678889999998766443 3446788899999999964 455444567889999999999865 44 676778999
Q ss_pred CCCccEEEccCCCCCCCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcC
Q 011820 313 LQNLVILDLSNTGLAGEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNL 374 (477)
Q Consensus 313 l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 374 (477)
+.+|+.+.+..+ ++..-..+|.++++|+.+++.++... ...+.....|+.+.+..|.+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 999999999755 66555678999999999999987643 24567778899888877654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=1.4e-08 Score=91.17 Aligned_cols=116 Identities=11% Similarity=0.067 Sum_probs=65.8
Q ss_pred hhcCCCCCCEeeccCC-cCCc----cchHHhhcCCCCCEEEcccCCCCCcCC---hhhhcCCCCccEEEccCCCCCCC--
Q 011820 260 EIGYLKNITLLDLRNN-KFSG----ELTKSLQEMYSLEEMVFSNNPIGGDLK---SLEWKNLQNLVILDLSNTGLAGE-- 329 (477)
Q Consensus 260 ~l~~l~~L~~L~Ls~N-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~i~---~~~~~~l~~L~~L~Ls~n~l~~~-- 329 (477)
.+...+.|++|+|++| .+.. .+...+...++|++|+|++|.+...-. ...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555555555555 5542 223344455566666666665542110 01233345666666666666543
Q ss_pred --chhhhcCCCCCCEEec--ccccCCCC----ChhhcCCCCCCCEEEeeCCcCe
Q 011820 330 --VPEFMAELKRLRFLGL--SNNKLTGT----ISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 330 --ip~~l~~l~~L~~L~L--s~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+...+...++|++|+| ++|.+... +...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677777777 67777653 3444555677888888888764
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=1.5e-08 Score=91.04 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=37.0
Q ss_pred hhhhcCCCCCcEEEcccC-CCCCc----cchhcCCCCCCcEEEeecccCCCC----CcccccCCccccEeeeecccCC
Q 011820 162 PTSLGHLMKLRSLVLLEN-GLSGE----LPTNLGRLSNLKKLVVSGNWLNGR----IPDSFGYLSELLILDLSRNSLS 230 (477)
Q Consensus 162 p~~l~~l~~L~~L~Ls~n-~l~~~----ip~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 230 (477)
...+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 344556667777777776 66532 334455566666666666666522 1222333344555555555544
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=9.1e-06 Score=81.04 Aligned_cols=104 Identities=10% Similarity=0.048 Sum_probs=53.6
Q ss_pred hccCCCCCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCCCCCccch
Q 011820 108 QLFELKHLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENGLSGELPT 187 (477)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~l~~~ip~ 187 (477)
++.++++|+.+++..+ +. .|+...|.. .+|+.+.+..+ ++ .|........+|+.+.+..+- + .+..
T Consensus 64 aF~~C~~L~~I~lp~~-v~------~Ig~~aF~~--c~l~~i~~~~~--l~-~I~~~aF~~~~L~~i~lp~~~-~-~i~~ 129 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VT------SIGDGAFAD--TKLQSYTGMER--VK-KFGDYVFQGTDLDDFEFPGAT-T-EIGN 129 (379)
T ss_dssp TTTTCTTCCEEEECTT-CC------EECTTTTTT--CCCCEEEECTT--CC-EECTTTTTTCCCSEEECCTTC-C-EECT
T ss_pred HhhCCCCCCEEEeCCc-ce------EechhhhcC--CCCceEECCce--ee-EeccceeccCCcccccCCCcc-c-cccc
Confidence 5667888888888643 22 566555554 25777766543 33 233332233467887776542 2 2222
Q ss_pred hcCCCCCCcEEEeecccCCCCCcccccCCccccEeeeec
Q 011820 188 NLGRLSNLKKLVVSGNWLNGRIPDSFGYLSELLILDLSR 226 (477)
Q Consensus 188 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 226 (477)
......+|+.+.+..+ ++..-...+..+.+++...+..
T Consensus 130 ~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 130 YIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp TTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred cccccceeeeeeccce-eeccccchhccccccccccccc
Confidence 2222234555555433 2222334455556666555543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=6.6e-08 Score=91.73 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=16.0
Q ss_pred CCCCCEeeccCCcCCc--cchHHhhcCCCCCEEEcccCCCC
Q 011820 264 LKNITLLDLRNNKFSG--ELTKSLQEMYSLEEMVFSNNPIG 302 (477)
Q Consensus 264 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~ 302 (477)
+++|+.|+|++|++++ .++..+..+++|+.|+|++|.++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 3444444444444443 22333334444444444444443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=7e-08 Score=91.53 Aligned_cols=66 Identities=32% Similarity=0.364 Sum_probs=30.4
Q ss_pred cCCCCCEEEcccCCCCC--cCChhhhcCCCCccEEEccCCCCCCCchhhhcCCC--CCCEEecccccCCCCCh
Q 011820 287 EMYSLEEMVFSNNPIGG--DLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELK--RLRFLGLSNNKLTGTIS 355 (477)
Q Consensus 287 ~l~~L~~L~Ls~N~l~g--~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~--~L~~L~Ls~N~l~g~ip 355 (477)
++++|+.|+|++|.+++ .++. .+..+++|+.|+|++|++++. ..+..++ +|+.|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 44555555555555543 2222 233455555555555555432 1122222 55555555555554433
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.17 E-value=5.9e-05 Score=75.05 Aligned_cols=239 Identities=14% Similarity=0.114 Sum_probs=152.4
Q ss_pred CCCEEEcccCCCCCCCCCCccChhhhhhcCCCccEEEccCCCCCCCCchh-hhcCCCCCcEEEcccCCCCCccchhcCCC
Q 011820 114 HLKSLSFFNCFTSSQQHPTTIPISGWENLAGSLESLEFRSNPGLTGPIPT-SLGHLMKLRSLVLLENGLSGELPTNLGRL 192 (477)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~~~~ip~~~~~~~~~~L~~L~Ls~n~~l~g~ip~-~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l 192 (477)
+|+.+.+..+ +. .|+...|.. .+|+.+++..+ ++ .+.. .+.+ .+|+.+.+..+ ++..-...+.++
T Consensus 92 ~l~~i~~~~~-l~------~I~~~aF~~--~~L~~i~lp~~--~~-~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~ 157 (379)
T 4h09_A 92 KLQSYTGMER-VK------KFGDYVFQG--TDLDDFEFPGA--TT-EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKA 157 (379)
T ss_dssp CCCEEEECTT-CC------EECTTTTTT--CCCSEEECCTT--CC-EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTC
T ss_pred CCceEECCce-ee------Eeccceecc--CCcccccCCCc--cc-ccccccccc-ceeeeeeccce-eeccccchhccc
Confidence 6777776543 22 455555543 47999988765 33 2222 3333 35666666543 332334456777
Q ss_pred CCCcEEEeecccCCC------------CCcccccCCccccEeeeecccCCCCccccccCCcCCcEEecccCcCCCCCchh
Q 011820 193 SNLKKLVVSGNWLNG------------RIPDSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLSNNQLEGKIPKE 260 (477)
Q Consensus 193 ~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 260 (477)
.+++.+.+..+.... .....+.....+..+.+.... .......+..+.+|+.+.+..+ +...-...
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~ 235 (379)
T 4h09_A 158 ENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGA 235 (379)
T ss_dssp TTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTT
T ss_pred ccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEcccc
Confidence 888888776544321 112233344455555443322 2233445667788888888655 33233456
Q ss_pred hcCCCCCCEeeccCCcCCccchHHhhcCCCCCEEEcccCCCCCcCChhhhcCCCCccEEEccCCCCCCCchhhhcCCCCC
Q 011820 261 IGYLKNITLLDLRNNKFSGELTKSLQEMYSLEEMVFSNNPIGGDLKSLEWKNLQNLVILDLSNTGLAGEVPEFMAELKRL 340 (477)
Q Consensus 261 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L 340 (477)
+.++..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +. .++...|.++.+|+.+.+.++.++..-...|.++.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCC
Confidence 778888999888765 44344556778888999988654 43 5666678889999999998888875556788899999
Q ss_pred CEEecccccCCCCChhhcCCCCCCCEEEeeCC
Q 011820 341 RFLGLSNNKLTGTISPKLATMPCVSALYLNGN 372 (477)
Q Consensus 341 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 372 (477)
+.++|..+ ++..-..+|.++++|+.+.+..+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 99999764 55334457888899998888654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=1.6e-05 Score=70.17 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=15.1
Q ss_pred CCCEeeccCC-cCCccchHHhhcCCCCCEEEcccC
Q 011820 266 NITLLDLRNN-KFSGELTKSLQEMYSLEEMVFSNN 299 (477)
Q Consensus 266 ~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N 299 (477)
+|++|++++| +++..--..+.++++|++|+++++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 3445555444 244332333444444555555444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1.1e-05 Score=71.17 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=43.5
Q ss_pred CCccEEEccCCCCCCCCchhhhcCCCCCcEEEcccCC-CCCccchhcCCC----CCCcEEEeeccc-CCCCCcccccCCc
Q 011820 144 GSLESLEFRSNPGLTGPIPTSLGHLMKLRSLVLLENG-LSGELPTNLGRL----SNLKKLVVSGNW-LNGRIPDSFGYLS 217 (477)
Q Consensus 144 ~~L~~L~Ls~n~~l~g~ip~~l~~l~~L~~L~Ls~n~-l~~~ip~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~ 217 (477)
.+|++||++++ .++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+.+++
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 35777777777 4655444455666666666666663 544333334433 245666665553 4422222334455
Q ss_pred cccEeeeecc
Q 011820 218 ELLILDLSRN 227 (477)
Q Consensus 218 ~L~~L~L~~N 227 (477)
+|++|+++++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=0.00012 Score=65.79 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=63.3
Q ss_pred cCCCCCCEeeccCC-cCCc----cchHHhhcCCCCCEEEcccCCCCCc----CChhhhcCCCCccEEEccCCCCCCC---
Q 011820 262 GYLKNITLLDLRNN-KFSG----ELTKSLQEMYSLEEMVFSNNPIGGD----LKSLEWKNLQNLVILDLSNTGLAGE--- 329 (477)
Q Consensus 262 ~~l~~L~~L~Ls~N-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~g~----i~~~~~~~l~~L~~L~Ls~n~l~~~--- 329 (477)
.+-+.|+.|+|++| .+.. .+.+.+...+.|+.|+|++|.+... +.. .+..-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHHHHH
Confidence 34455666666653 4442 2344555556666666666666421 111 233445677777777776543
Q ss_pred -chhhhcCCCCCCEEeccccc---CCC----CChhhcCCCCCCCEEEeeCCcCe
Q 011820 330 -VPEFMAELKRLRFLGLSNNK---LTG----TISPKLATMPCVSALYLNGNNLS 375 (477)
Q Consensus 330 -ip~~l~~l~~L~~L~Ls~N~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~ 375 (477)
+-+.+..-+.|+.|+|++|. +.. .+...+..-++|+.|+++.|...
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23345555678888887653 332 24445666678888888776543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00012 Score=65.64 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCCcEEEcccC-CCCC----ccchhcCCCCCCcEEEeecccCCC----CCcccccCCccccEeeeecccCC
Q 011820 168 LMKLRSLVLLEN-GLSG----ELPTNLGRLSNLKKLVVSGNWLNG----RIPDSFGYLSELLILDLSRNSLS 230 (477)
Q Consensus 168 l~~L~~L~Ls~n-~l~~----~ip~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~ 230 (477)
-+.|++|+|++| .+.. .+-+.+...+.|+.|+|++|.+.. .+.+.+..-+.|++|+|+.|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344555555543 4332 123334444555555555555441 12222333344444444444443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.04 E-value=0.001 Score=55.55 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=47.2
Q ss_pred cEEEccCCCCC-CCchhhhcCCCCCCEEecccccCCCCChhhcCCCCCCCEEEeeCCcCeeecC
Q 011820 317 VILDLSNTGLA-GEVPEFMAELKRLRFLGLSNNKLTGTISPKLATMPCVSALYLNGNNLSGELQ 379 (477)
Q Consensus 317 ~~L~Ls~n~l~-~~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 379 (477)
..++.+++.++ ..+|..+ .++|+.|+|++|+|+..-+..|..+++|+.|+|++|++.+...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 36777777776 3566533 2578999999999996555667889999999999999988765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.80 E-value=0.012 Score=48.97 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=12.0
Q ss_pred CcEEEeecccCCCCCcccccCCccccEeeeecc
Q 011820 195 LKKLVVSGNWLNGRIPDSFGYLSELLILDLSRN 227 (477)
Q Consensus 195 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 227 (477)
|++|+|++|+|+...+..|..+++|+.|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 333333333333222223333333333333333
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.61 E-value=1.1e+02 Score=23.29 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=4.8
Q ss_pred cCCCCCCcEEEe
Q 011820 189 LGRLSNLKKLVV 200 (477)
Q Consensus 189 l~~l~~L~~L~L 200 (477)
|.++++|+.+.+
T Consensus 16 F~~c~~L~~i~i 27 (100)
T 2lz0_A 16 FAGNTVIREITV 27 (100)
T ss_dssp TTTCTTCCCEEE
T ss_pred hcCCCCCcEEEc
Confidence 333444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.01 E-value=1.3e+02 Score=22.80 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=18.1
Q ss_pred ccccCCccccEeeeecccCCCCccccccCCcCCcEEecc
Q 011820 211 DSFGYLSELLILDLSRNSLSGPLPLSLGGLTSLLKFDLS 249 (477)
Q Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 249 (477)
..|.++.+|+.+.+-.+ ++..-...|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44555555555555432 222333445555555555544
Done!