Query 011822
Match_columns 476
No_of_seqs 133 out of 1080
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_A Protein transport prote 100.0 2E-111 6E-116 892.0 31.8 470 4-475 2-472 (476)
2 2ww9_A SEC sixty-one protein h 100.0 2E-110 7E-115 886.2 26.9 463 2-470 1-474 (490)
3 3mp7_A Preprotein translocase 100.0 4E-105 1E-109 844.4 24.4 448 5-471 1-458 (482)
4 1rh5_A Preprotein translocase 100.0 6E-102 2E-106 811.8 40.5 424 8-471 1-426 (436)
5 3dl8_G Preprotein translocase 100.0 7E-93 2.4E-97 742.4 28.8 387 18-471 2-422 (429)
6 2zjs_Y Preprotein translocase 100.0 1.8E-92 6E-97 739.1 30.5 386 20-471 4-423 (434)
7 3din_C Preprotein translocase 100.0 6E-92 2.1E-96 735.1 28.2 380 18-471 2-417 (431)
8 3j01_A Preprotein translocase 100.0 2.7E-91 9.1E-96 731.0 27.6 382 26-470 8-420 (435)
9 2nsc_A Trigger factor, TF; cha 52.4 8 0.00027 32.0 2.7 22 399-420 37-59 (109)
10 1p9y_A Trigger factor, TF; alp 44.5 12 0.00042 31.5 2.7 22 399-420 40-62 (121)
11 2d3o_1 Trigger factor, TF; rib 37.5 10 0.00034 31.5 1.0 22 399-420 36-58 (112)
No 1
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=1.8e-111 Score=892.02 Aligned_cols=470 Identities=68% Similarity=1.167 Sum_probs=424.6
Q ss_pred CCchHHhHHhHhhhchHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhhHHHHHhhhccccchhccc
Q 011822 4 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGI 83 (476)
Q Consensus 4 ~~~~~~~~~~~~~~lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~~~~~~~~i~a~~~~SlfsLGI 83 (476)
|+|++|.+||+.+++|||++|++|+|+|||++||++++++||+|+|||+||+|.++..|++.+++++||++|+|+|+|||
T Consensus 2 ~~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaLGI 81 (476)
T 2wwb_A 2 AIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGI 81 (476)
T ss_dssp CSCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSSSS
T ss_pred CchHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHHhh
Confidence 49999999999999999999999999999999999999999999999999999988788899999999999999999999
Q ss_pred hHHHhHHHHHHHHhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhHHHHHHHHHHHHHH
Q 011822 84 TPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGI 163 (476)
Q Consensus 84 ~PyItAsII~QLl~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~ 163 (476)
+||||||||||||++.++.+.+++.+ ||+|+|++||++|+++|++||++++.++.++...+.++.+.++++++|++|++
T Consensus 82 ~PyItASII~QLL~g~~iip~~~~l~-gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~ 160 (476)
T 2wwb_A 82 SPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL 160 (476)
T ss_dssp THHHHHHHHHHHHHHHCCCSCCSSSS-CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHH
Confidence 99999999999998766777666655 99999999999999999999999987544543334455667899999999999
Q ss_pred HHHHHHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHHHHHhcCCc
Q 011822 164 IVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP 243 (476)
Q Consensus 164 i~~wL~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~l~ 243 (476)
++|||||+||||||+|||+|++|++||+++++|+.|+|.+.+...+.|++|+++.+++.+.+++++.++++++++|.++|
T Consensus 161 ~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~ 240 (476)
T 2wwb_A 161 IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 240 (476)
T ss_dssp HHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHH
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccc
Confidence 99999999999999999999999999999999999999876666666888888777776666777777888888888877
Q ss_pred cHHHHHHHHHHHHHHHhhcccEEeeeeeeccCCCCCccceeccccccchhHHHHHHHHHHHHHHHHHhhhhcCCcchhhc
Q 011822 244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNL 323 (476)
Q Consensus 244 ~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiifasall~~p~~i~~~~~~~~~~~~~~~~ 323 (476)
++..+++++++++++||+|++|||||+||+|.+|+++|+|+|+||+||||+|||||++++|+++++++++.++++..+++
T Consensus 241 ~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~ 320 (476)
T 2wwb_A 241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL 320 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred hHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhh
Confidence 87788888889999999999999999999999999999999999999999999999999999999987655444444556
Q ss_pred cccccccc-cCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCc
Q 011822 324 LGKWKESE-YSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMV 402 (476)
Q Consensus 324 l~~~~~~~-~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~~iA~~Lkk~g~~ 402 (476)
++.|.+.+ +..++++|++|+++|++||+++.+.+.+|+|.++|.+++++||++|+++|++++|+||||+||||||||++
T Consensus 321 lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~ 400 (476)
T 2wwb_A 321 LGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMV 400 (476)
T ss_dssp HCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTT
T ss_pred hhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 66664321 11246789999999999999888778899999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHhhchhhhhHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 011822 403 MPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 475 (476)
Q Consensus 403 IpGiRpG~T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~g~GtslLI~Vgv~~~~~~qi~~e~~~~~~~~~ 475 (476)
|||+||.+|+|||+|+++|+|++||+|++++|++|++++.++||||+||+||++++++||+++|+. |||.-|
T Consensus 401 IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~~~~gGTslLI~Vgv~~~~~e~i~~e~~-~~~~~~ 472 (476)
T 2wwb_A 401 MRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGSMG 472 (476)
T ss_dssp TCCCCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHHT-CCSSCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-hhhhhh
Confidence 999999999999999999999999999999999999998788999999999999999999999999 997654
No 2
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=1.9e-110 Score=886.15 Aligned_cols=463 Identities=32% Similarity=0.570 Sum_probs=412.0
Q ss_pred CCCCchHHhHHhHhhhchHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCC---CCChhhHHHHHhhhccccc
Q 011822 2 GGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTT---GADPFYWMRVILASNRGTV 78 (476)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~---~~~~~~~~~~i~a~~~~Sl 78 (476)
|+|+|++|.+||+++++|||++|+|++|+|||++||++++++||+ +|||+||+|.++ ..|++.+++.++|++|+|+
T Consensus 1 ~~~~~~~~~~~p~~~~lPev~~P~~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~~~~~~~~~~~~~~a~~~~si 79 (490)
T 2ww9_A 1 MSGFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTPNVNDPIYFLRGVFGCEPRTL 79 (490)
T ss_dssp CCCSCCCCCCCSSGGGSCCCCCCCCCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTTCSSCCCTTTHHHHTCCSSST
T ss_pred CccchHHHHHHHHHHhCCcccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHhcccCHHHHHHHHHcccccHH
Confidence 778999999999999999999999999999999999999999999 999999999983 3566666666669999999
Q ss_pred hhccchHHHhHHHHHHHHhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhHHHHHHHHH
Q 011822 79 MELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQL 158 (476)
Q Consensus 79 fsLGI~PyItAsII~QLl~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~vl~L 158 (476)
|+|||+||||||||||||++.++.++|||+|+||||+|++|||+|+++|++||++++.++.++ .+.++.+.++++++|
T Consensus 80 faLGI~PyItASII~QLL~g~~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~~~~~~--~~~~~~~~~~ivl~L 157 (490)
T 2ww9_A 80 LEFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFG--DDLSVVQIGLINFQL 157 (490)
T ss_dssp TSSTTHHHHHHHHHHHHHHHHTSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCSTTHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhhCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 999999999999999999877888999999999999999999999999999999999865443 234555678999999
Q ss_pred HHHHHHHHHHHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCc--ccchhHHHHHHHH-HhcchhHHHHHH
Q 011822 159 CFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGA--EFEGAVIALFHLL-ITRNDKVRALRE 235 (476)
Q Consensus 159 ~aGs~i~~wL~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~--~~~g~i~~~~~~l-~~~~~~~~~~~~ 235 (476)
++|++++|||||+||||||+|||+||+|++||+++++|++++|.+.....+. |++|+++.+++.+ ..+++|.+++++
T Consensus 158 ~~Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~ 237 (490)
T 2ww9_A 158 VGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIIS 237 (490)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCC
T ss_pred HHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhh
Confidence 9999999999999999999999999999999999999999999766654433 7889988877755 244444444556
Q ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhcccEEeeeeeeccCCCCCccceeccccccchhHHHHHHHHHHHHHHHH----Hh
Q 011822 236 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQ----LM 311 (476)
Q Consensus 236 ~~~~~~l~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiifasall~~p~~i~~----~~ 311 (476)
.++|.++|+++.+++++++++++||+|++||||||||+|++|+++|+|+|+||+||||+|||||++++|+++++ ++
T Consensus 238 ~~~r~~lp~l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~ 317 (490)
T 2ww9_A 238 AFNRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLV 317 (490)
T ss_dssp CCSSSSCCSHHHHHHHHHHHHHHHHHTTCCEECCCBCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHH
T ss_pred HHhhccccHHHHHHHHHHHHHHHheeeeeEEEEEEEEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999888 65
Q ss_pred hhhcCCcchhhccccccccccCCCccccccceeecccCCcccchhccC-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 011822 312 YRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAAN-PFHALFYLVFMLSACALFSKTWIEVSGSSAR 390 (476)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~-~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~ 390 (476)
++.++++...++++.|.+. .++++|++++++|++||+++.+.+.+ |+|.++|.++.+++|++|||+|++++|+|||
T Consensus 318 ~~~~~~~~~~~~lg~~~~~---~~~~~~~~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~ 394 (490)
T 2ww9_A 318 AKNEPTHIICKIMGHYENA---NNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSAR 394 (490)
T ss_dssp HHCCCCSSSCTTSBCCSCC---SSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred cccCCCccccccccchhcc---ccccchhHHHHHHhCCccchhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 5433333223345556421 24567889999999999988877888 9999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccchHHHHHHhhchhhhhHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhc
Q 011822 391 DVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 470 (476)
Q Consensus 391 ~iA~~Lkk~g~~IpGiRpG~T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~g~GtslLI~Vgv~~~~~~qi~~e~~~~ 470 (476)
|+||||||||++|||+|||+|+|||+|+++|+|++||+|++++|++|++++.++||||+||+|||++|++||+++|+.++
T Consensus 395 dvA~nLkk~G~~IpGiRpG~T~~yL~~vi~rit~~Ga~~L~~lavlp~~l~~~ggGTslLI~VgV~~~~~~qi~~e~~~~ 474 (490)
T 2ww9_A 395 DVALEFKDQGITLMGRREQNVAKELNKVIPIAAVTGASVLSLITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIEYQQS 474 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999877899999999999999999999998766
No 3
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=3.6e-105 Score=844.40 Aligned_cols=448 Identities=35% Similarity=0.707 Sum_probs=320.5
Q ss_pred CchHHhHHhHhhhchHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhhHHHHHhhhccccchhccch
Q 011822 5 FRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGIT 84 (476)
Q Consensus 5 ~~~~~~~~~~~~~lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~~~~~~~~i~a~~~~SlfsLGI~ 84 (476)
|+++|.+||+++++|||++|+|++|+|||++||++++++||+|++||+||+|.+. .|++.+++.++|.+|+|+|+|||+
T Consensus 1 ~~~~~~~~p~~~~lP~v~~P~~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~~-~~~~~~l~~~~Gg~~~SifaLGI~ 79 (482)
T 3mp7_A 1 MGARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERI-QDYFQFLRVVLAGRNGSILTLGIG 79 (482)
T ss_dssp -------------------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSSC-CCSCSSTTTTTCSCTTBTTSSTTH
T ss_pred CCHHHHHHHHHhhCCCccCccccccHHHHHHHHHHHHHHHHHHhhCCCCCcCccc-ccHHHHHHHhcCCCcccHHHHhhH
Confidence 4689999999999999999999999999999999999999999999999999864 355655566667899999999999
Q ss_pred HHHhHHHHHHHHhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc-cchhHHHHHHHHHHHHHH
Q 011822 85 PIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQ-LGVGNAILIIVQLCFAGI 163 (476)
Q Consensus 85 PyItAsII~QLl~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~-~~~~~~~~~vl~L~aGs~ 163 (476)
||||||||||||+..+++++|||+|+||+|+|++|||+|+++|++||.+++.++.++...+ .+..+.++++++|++|++
T Consensus 80 PyITASII~QLL~~~~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~~~~~~~~~~~~~~~~~~~ivl~L~aGt~ 159 (482)
T 3mp7_A 80 PIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGI 159 (482)
T ss_dssp HHHHHHHHTTC-----------------------CHHHHHHHHHHHHHHHHHSSSSSCC------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998754432111 233567899999999999
Q ss_pred HHHHHHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccC-----CCcccchhHHHHHHHHHhcchhHHHHHHHHH
Q 011822 164 IVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSG-----RGAEFEGAVIALFHLLITRNDKVRALREAFY 238 (476)
Q Consensus 164 i~~wL~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~-----~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~ 238 (476)
++|||||+||| ||+|||+|++|++||+++++|+++++.+.... .+.|++|+++.+++.+.. +++.++++
T Consensus 160 ~lmwL~E~It~-~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~-----~~l~~~~~ 233 (482)
T 3mp7_A 160 VLIILDELVSK-WGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILK-----GDLWGAIY 233 (482)
T ss_dssp HHHHHHHHHHH-HSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHH-----CCSCSSCC
T ss_pred HHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhc-----chhhHHHh
Confidence 99999999999 99999999999999999999999987543221 245678888777665432 22334555
Q ss_pred hcCCc--cHHHHHHHHHHHHHHHhhcccEEeeeeeeccCCCCCccceeccccccchhHHHHHHHHHHHHHHHHHhhhhcC
Q 011822 239 RQNLP--NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYS 316 (476)
Q Consensus 239 ~~~l~--~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiifasall~~p~~i~~~~~~~~~ 316 (476)
| ++| +++.+++++++++++||+|++|||||+||+|++ +++|+|+|+|||||||+|||||++++|+++++++++.
T Consensus 234 ~-~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~~-~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~-- 309 (482)
T 3mp7_A 234 R-GGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRL-- 309 (482)
T ss_dssp C-SSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred h-ccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEecccc-ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhc--
Confidence 6 677 788888999999999999999999999999977 8999999999999999999999999999999987532
Q ss_pred CcchhhccccccccccCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 011822 317 GNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQL 396 (476)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~~iA~~L 396 (476)
..+++++|... ..+|++++++|++||.++.+++.+|++..+|.++.+++|++|||+|++++++||||+||||
T Consensus 310 ---~~~~l~~~~~~-----~~~~~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~diA~nl 381 (482)
T 3mp7_A 310 ---GHPWLGRFDPT-----TGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQL 381 (482)
T ss_dssp ---SCCSSBCCCCT-----TSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC--
T ss_pred ---cchhhhhhccc-----ccccchhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 12345555321 1358889999999998887777899999999999999999999999999889999999999
Q ss_pred HHcCCcccccccc-h-HHHHHHhhchhhhhHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhcc
Q 011822 397 KEQQMVMPGHREA-N-LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 471 (476)
Q Consensus 397 kk~g~~IpGiRpG-~-T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~g~GtslLI~Vgv~~~~~~qi~~e~~~~~ 471 (476)
||||++|||+||| + |+|||+|+++|+|++||+|++++|++|++++..|||||+||+|||++|++||+++|+.+|+
T Consensus 382 kk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~L~~iavlp~~l~~~ggGTslLI~VgV~~~~~~qi~s~~~~~~ 458 (482)
T 3mp7_A 382 QRAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITEM 458 (482)
T ss_dssp ------CCTTTTTTSTTCC------CTHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCccCCcCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCceeeeeeHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 6 7999999999999999999999999999999888999999999999999999999997764
No 4
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=5.7e-102 Score=811.83 Aligned_cols=424 Identities=37% Similarity=0.715 Sum_probs=359.4
Q ss_pred HHhHHhHhhhchHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChhhHHHHHhhhccccchhccchHHH
Q 011822 8 LHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIV 87 (476)
Q Consensus 8 ~~~~~~~~~~lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~~~~~~~~i~a~~~~SlfsLGI~PyI 87 (476)
+|.+||+++++|||++|+|++|+|||++||++++++||+|+|||+||+|.++. |++.+++.++|++|+|+|+|||+|||
T Consensus 1 ~~~~~p~~~~lP~v~~p~~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~~-~~~~~~~~~~a~~~~sifaLGI~PyI 79 (436)
T 1rh5_A 1 MKKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTITASRIGTLITLGIGPIV 79 (436)
T ss_dssp -CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-SCCTTHHHHHTCCTTBTTTTTTHHHH
T ss_pred CchhhHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHHHhhccccchHHHHccHHHH
Confidence 58899999999999999999999999999999999999999999999999654 55555555558999999999999999
Q ss_pred hHHHHHHHHhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhHHHHHHHHHHHHHHHHHH
Q 011822 88 TSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVIC 167 (476)
Q Consensus 88 tAsII~QLl~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~i~~w 167 (476)
|||||||||++.++.++|||+|+||+|+|++|||+|+++|++||++++.++.+. +.+..+.++++++|++|++++||
T Consensus 80 tAsII~QLL~g~~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g~~~---~~~~~~~~~~vl~L~~Gt~~lmw 156 (436)
T 1rh5_A 80 TAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIY 156 (436)
T ss_dssp HHHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999877788999999999999999999999999999999999864333 23455678899999999999999
Q ss_pred HHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHHHHHhcCCccHHH
Q 011822 168 LDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTN 247 (476)
Q Consensus 168 L~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~ 247 (476)
|||+||| ||+|||+|++|++||+++++|++++|. |+++.+++.+.++++ +..++..
T Consensus 157 L~E~It~-~GiGnGiSLiI~~gI~~~lp~~~~~~~-----------G~i~~~~~~~~~~~~------------~~~~l~~ 212 (436)
T 1rh5_A 157 LDEIVSK-YGIGSGIGLFIAAGVSQTIFVGALGPE-----------GYLWKFLNSLIQGVP------------NIEYIAP 212 (436)
T ss_dssp HHHHHHH-HSSSCHHHHHHHHHHHHHHHHHHHSTT-----------CHHHHHHHHTTTTCC------------CGGGTHH
T ss_pred HHHHHHh-cCcccccHHHHHHHHHHHHHHHHhccc-----------chHHHHHHHHhcccc------------hHHHHHH
Confidence 9999999 999999999999999999999988863 778776654332211 1112566
Q ss_pred HHHHHHHHHHHHhhcccEEeeeeeeccCCCCCccceeccccccchhHHHHHHHHHHHHHHHHHhhhhcCCcchhhccccc
Q 011822 248 LLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKW 327 (476)
Q Consensus 248 ~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiifasall~~p~~i~~~~~~~~~~~~~~~~l~~~ 327 (476)
+++++++++++||+|++|||||+||+|.+|+++|+|+|+||+||||+|||||++++|+++++++++. + . ++++.|
T Consensus 213 l~~~l~v~~~vV~~~~~~rrIPvqyak~~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~-~-~---~~~g~~ 287 (436)
T 1rh5_A 213 IIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRM-G-I---PILGHY 287 (436)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTT-S-C---CTTCCB
T ss_pred HHHHHHHHHHHHhhcceEEEEEEEecccCCccceeeeecccccchHHHHHHHHHHHHHHHHHHhccc-C-c---chhhhc
Confidence 7778888999999999999999999999999999999999999999999999999999999977532 1 1 134445
Q ss_pred cccccCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCCcccccc
Q 011822 328 KESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR 407 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~~iA~~Lkk~g~~IpGiR 407 (476)
. +++|++|++||++||++..+.+.+|.+..+|.++.+++|++|||+|++++++||||+||||||||++|||+|
T Consensus 288 ~-------~~~~~~gl~yyl~pp~~~~~~~~~p~~~~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiR 360 (436)
T 1rh5_A 288 E-------GGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFR 360 (436)
T ss_dssp C-------SSSBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC-----------
T ss_pred c-------cccccccchhhcCChhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcC
Confidence 2 247999999999999876665667888788999999999999999999977999999999999999999999
Q ss_pred cc-h-HHHHHHhhchhhhhHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHhhhcc
Q 011822 408 EA-N-LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 471 (476)
Q Consensus 408 pG-~-T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~g~GtslLI~Vgv~~~~~~qi~~e~~~~~ 471 (476)
|| + |+|||+|+++|+|++||+|++++|++|++++.++||||+||+|||++|++||+++|..+|+
T Consensus 361 pG~~tt~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~gGTslLI~VgV~~~~~~qi~~~~~~~~ 426 (436)
T 1rh5_A 361 KSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERTSEL 426 (436)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99 8 7999999999999999999999999999998778999999999999999999999987764
No 5
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=7e-93 Score=742.43 Aligned_cols=387 Identities=19% Similarity=0.310 Sum_probs=322.0
Q ss_pred chHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC-------hhhHHHHHh-h--hccccchhccchHHH
Q 011822 18 LPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL-A--SNRGTVMELGITPIV 87 (476)
Q Consensus 18 lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~-------~~~~~~~i~-a--~~~~SlfsLGI~PyI 87 (476)
+.++++.+|++|+|||++||++++++||+|+|||+||+|.++.++ .++++.+++ | ++|+|+|||||+|||
T Consensus 2 ~~~~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyI 81 (429)
T 3dl8_G 2 SEYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYI 81 (429)
T ss_dssp ------CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHH
T ss_pred hHHHHHHHcchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHH
Confidence 446778999999999999999999999999999999999987643 122233444 3 689999999999999
Q ss_pred hHHHHHHHHhcc--chhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CCccccchhHHHHHHHH
Q 011822 88 TSGLVMQLLAGS--KIIEVDN-NVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMY-------GSVNQLGVGNAILIIVQ 157 (476)
Q Consensus 88 tAsII~QLl~~~--~l~~l~~-~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~-------~~~~~~~~~~~~~~vl~ 157 (476)
|||||||||+.. ++++++| |+|+||+|+|++|||+|+++|++||.+++.++.+ +...+.++.+.++++++
T Consensus 82 tAsII~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 161 (429)
T 3dl8_G 82 SASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLT 161 (429)
T ss_dssp HHHHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHH
Confidence 999999999998 8999999 9999999999999999999999999999876432 11223455678899999
Q ss_pred HHHHHHHHHHHHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHHHH
Q 011822 158 LCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAF 237 (476)
Q Consensus 158 L~aGs~i~~wL~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~ 237 (476)
|++|++++|||||+||| ||+|||+|++|++||+++++|+.+++.+.... + + .|.+
T Consensus 162 L~aGt~~lmwL~E~It~-~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~-g-~-~~~~--------------------- 216 (429)
T 3dl8_G 162 LVAGTMFLVWIADRITE-KGIGNGASLIIFAGIVANFPNAVIQFYEKVKT-G-D-IGPL--------------------- 216 (429)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSC-S-S-SCTH---------------------
T ss_pred HHHHHHHHHHHHHHHhh-cCcCcchHHHHHHHHHHHHHHHHHhHHHHhcC-C-c-chHH---------------------
Confidence 99999999999999999 99999999999999999999888876422110 0 1 1211
Q ss_pred HhcCCccHHHHHHHHHHHHHHHhhcccEEeeeeeeccC-------CCCCccceeccccccchhHHHHHHHHHHHHHHHHH
Q 011822 238 YRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQL 310 (476)
Q Consensus 238 ~~~~l~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~-------~~~~~~~PiKln~aGvmPiifasall~~p~~i~~~ 310 (476)
+++..+++++++++++||+|++|||||+||+|+ +|+++|+|+|+|||||||+|||||++++|++++++
T Consensus 217 -----~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~ 291 (429)
T 3dl8_G 217 -----TLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNF 291 (429)
T ss_dssp -----HHHHHHHHHHHHHHHHTCSCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHHHHHHHheeeEEEEEEEEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHH
Confidence 235677788888999999999999999999874 57999999999999999999999999999999887
Q ss_pred hhhhcCCcchhhccccccccccCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q 011822 311 MYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSAR 390 (476)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~ 390 (476)
+++ +|.. ++.++++| .+|+|.++|.+++++|| |+|++++ +|||
T Consensus 292 ~~~------------~~~~------------~~~~~l~~--------~~~~y~~~y~~lii~Fs----~fy~~i~-~np~ 334 (429)
T 3dl8_G 292 VQN------------PFIK------------VIADMFQP--------GAIFYNFLYVTFIVFFT----YFYTAVL-INPV 334 (429)
T ss_dssp CSS------------CCCC------------TTTTTTTT--------THHHHHHHHHHHHHHHH----HHHHTCT-THHH
T ss_pred cch------------HHHH------------HHHHHcCC--------CchHHHHHHHHHHHHHH----HHHHHHc-cCHH
Confidence 531 1321 24457775 36888888888777776 6788888 9999
Q ss_pred HHHHHHHHcCCcccccccc-hHHHHHHhhchhhhhHHHHHHHHHHHhHHHHhh-hc-----ccchhHHHHHHHHHHHHHH
Q 011822 391 DVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGGMCIGALTVLADFMGA-IG-----SGTGILLAVTIIYQYFETF 463 (476)
Q Consensus 391 ~iA~~Lkk~g~~IpGiRpG-~T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~-~g-----~GtslLI~Vgv~~~~~~qi 463 (476)
|+||||||||++|||+||| +|+|||+|+++|+|++||+|++++|++|++++. .+ ||||+||+|||++|++||+
T Consensus 335 diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi 414 (429)
T 3dl8_G 335 ELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWFNIPFYFGGTTALIVVGVALDTFRQI 414 (429)
T ss_dssp HHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCCCSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999985 33 8999999999999999999
Q ss_pred HHHhhhcc
Q 011822 464 EKERASEL 471 (476)
Q Consensus 464 ~~e~~~~~ 471 (476)
|++..++.
T Consensus 415 ~s~l~~~~ 422 (429)
T 3dl8_G 415 ETYLIQKK 422 (429)
T ss_dssp HHHCCCCC
T ss_pred HHHHHHHH
Confidence 99987664
No 6
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=1.8e-92 Score=739.06 Aligned_cols=386 Identities=21% Similarity=0.315 Sum_probs=322.5
Q ss_pred HhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC-------hhhHHHHHh---hhccccchhccchHHHhH
Q 011822 20 EVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL---ASNRGTVMELGITPIVTS 89 (476)
Q Consensus 20 ~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~-------~~~~~~~i~---a~~~~SlfsLGI~PyItA 89 (476)
++++.+|++|+|||++||++++++||+|+|||+||+|.++.+| +++++.+++ |++|+|+|+|||+|||||
T Consensus 4 ~~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItA 83 (434)
T 2zjs_Y 4 AFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITA 83 (434)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHH
T ss_pred HHHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHH
Confidence 4556788999999999999999999999999999999976643 456566666 478999999999999999
Q ss_pred HHHHHHHhcc--chhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCC--ccc--cchhHHHHHHHHHHH
Q 011822 90 GLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSG---MYGS--VNQ--LGVGNAILIIVQLCF 160 (476)
Q Consensus 90 sII~QLl~~~--~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~---~~~~--~~~--~~~~~~~~~vl~L~a 160 (476)
|||||||+.. ++++++||||+||||+|++|||+|+++|++||++++.+. .++. ..+ .++.+.++++++|++
T Consensus 84 SII~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a 163 (434)
T 2zjs_Y 84 AIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA 163 (434)
T ss_dssp HHHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence 9999999765 678899999999999999999999999999999999762 1221 123 445567899999999
Q ss_pred HHHHHHHHHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHHHHHhc
Q 011822 161 AGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240 (476)
Q Consensus 161 Gs~i~~wL~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~ 240 (476)
|++++|||||+||| ||+|||+|++|++||++++++.+.+.-+ ... .|.+ .+.
T Consensus 164 Gt~~lmwLgE~It~-~GIGnGiSliI~~gIv~~lp~~~~~~~~--~~~----~~~~-~~~-------------------- 215 (434)
T 2zjs_Y 164 GIALLLWMAERITE-YGIGNGTSLIIFAGIVVEWLPQILRTIG--LIR----TGEV-NLV-------------------- 215 (434)
T ss_dssp HHHHHHHHHHHHHH-TSSSCHHHHHHHHHHHHTHHHHHHHHHH--TTT----TTSS-CHH--------------------
T ss_pred HHHHHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHHHHH--Hhc----cCcc-cHH--------------------
Confidence 99999999999999 9999999999999999999654432110 000 0000 000
Q ss_pred CCccHHHHHHHHHHHHHHHhhcccEEeeeeeeccC---C----CCCccceeccccccchhHHHHHHHHHHHHHHHHHhhh
Q 011822 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNA---R----GQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYR 313 (476)
Q Consensus 241 ~l~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~---~----~~~~~~PiKln~aGvmPiifasall~~p~~i~~~~~~ 313 (476)
..++.+++++++++++||+|++|||||+||+|+ | |+++|+|+|+||+||||+|||||++++|+++++++.
T Consensus 216 --~~~~~l~~~~~vi~~vV~~~~~~rrIPvqyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~- 292 (434)
T 2zjs_Y 216 --AFLFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQ- 292 (434)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCT-
T ss_pred --HHHHHHHHHHHHHHHHHHheeeEEEEeehhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhc-
Confidence 013456677788889999999999999999985 3 789999999999999999999999999999998654
Q ss_pred hcCCcchhhccccccccccCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 011822 314 RYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVA 393 (476)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~~iA 393 (476)
. + .|.+ ++.+|++| .+|+|.++|.+++++|| |+|++++ +||||+|
T Consensus 293 ~---~-------~~~~------------~~~~~l~~--------~~~~y~~~y~~lii~Fs----~fyt~i~-~np~diA 337 (434)
T 2zjs_Y 293 D---N-------PVLQ------------GIANFFNP--------TRPSGLFIEVLLVILFT----YVYTAVQ-FDPKRIA 337 (434)
T ss_dssp T---C-------HHHH------------HHHHHHCS--------SSHHHHHHHHHHHHHHH----HHHHHCS-SCHHHHH
T ss_pred c---c-------hHHH------------HHHHHcCC--------CChHHHHHHHHHHHHHH----HHHHHHc-cCHHHHH
Confidence 1 1 1321 13457776 37999999999999777 6788888 9999999
Q ss_pred HHHHHcCCcccccccc-hHHHHHHhhchhhhhHHHHHHHHHHHhHHHHhhh-c------ccchhHHHHHHHHHHHHHHHH
Q 011822 394 KQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGGMCIGALTVLADFMGAI-G------SGTGILLAVTIIYQYFETFEK 465 (476)
Q Consensus 394 ~~Lkk~g~~IpGiRpG-~T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~-g------~GtslLI~Vgv~~~~~~qi~~ 465 (476)
|||||||++|||+||| +|+|||+|+++|+|++||+|++++|++|++++.+ + ||||+||+|||++|++||+++
T Consensus 338 ~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s 417 (434)
T 2zjs_Y 338 ESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIGLLIVVGVALDTLRQVES 417 (434)
T ss_dssp HHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999999998755 3 899999999999999999999
Q ss_pred Hhhhcc
Q 011822 466 ERASEL 471 (476)
Q Consensus 466 e~~~~~ 471 (476)
|..+|+
T Consensus 418 ~~~~~~ 423 (434)
T 2zjs_Y 418 QLMLRS 423 (434)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 997654
No 7
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=6e-92 Score=735.12 Aligned_cols=380 Identities=18% Similarity=0.256 Sum_probs=318.7
Q ss_pred chHhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC------------hhhHHHHHh-h--hccccchhcc
Q 011822 18 LPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD------------PFYWMRVIL-A--SNRGTVMELG 82 (476)
Q Consensus 18 lp~v~~~~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~------------~~~~~~~i~-a--~~~~SlfsLG 82 (476)
+.++++.+|++|+|||++||++++++||+|+|||+||+|.++.++ .++++.+++ | ++|+|+||||
T Consensus 2 ~~~~~~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLG 81 (431)
T 3din_C 2 WQAFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMS 81 (431)
T ss_dssp ------CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSS
T ss_pred hHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHh
Confidence 346778999999999999999999999999999999999976422 122333444 3 5899999999
Q ss_pred chHHHhHHHHHHHHhcc--chhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---c-cccc-hhHHHHHH
Q 011822 83 ITPIVTSGLVMQLLAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGS---V-NQLG-VGNAILII 155 (476)
Q Consensus 83 I~PyItAsII~QLl~~~--~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~~~---~-~~~~-~~~~~~~v 155 (476)
|+||||||||||||+.. ++++++||+|+||+|+|++|||+|+++|++||.+++.++.++. . .+.+ ..+.++++
T Consensus 82 I~PyItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 161 (431)
T 3din_C 82 VTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLST 161 (431)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHH
Confidence 99999999999999998 9999999999999999999999999999999999987643321 1 2334 56788999
Q ss_pred HHHHHHHHHHHHHHhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHH
Q 011822 156 VQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 235 (476)
Q Consensus 156 l~L~aGs~i~~wL~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~ 235 (476)
++|++|++++|||||+||| ||+|||+|++|++||+++++|+++++.+ . ..|.+
T Consensus 162 l~L~aGt~~lmwL~E~It~-~GiGnGiSliI~~gI~~~lp~~~~~~~~--~-----~~~~~------------------- 214 (431)
T 3din_C 162 MSMLAGTMFLLWLGERITE-KGIGNGISILIFAGIVARYPSYIRQAYL--G-----GLNLL------------------- 214 (431)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHHSTTSSSCCSS--C-----CSCTH-------------------
T ss_pred HHHHHHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHHHHHhc--c-----cccHH-------------------
Confidence 9999999999999999999 9999999999999999999888776531 1 11221
Q ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhcccEEeeeeeeccC-------CCCCccceeccccccchhHHHHHHHHHHHHHHH
Q 011822 236 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFIS 308 (476)
Q Consensus 236 ~~~~~~l~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~-------~~~~~~~PiKln~aGvmPiifasall~~p~~i~ 308 (476)
+++..+++++++++++||+|++|||||+||+|+ +|+++|+|+|+|||||||+|||||++++|++++
T Consensus 215 -------~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~ 287 (431)
T 3din_C 215 -------EWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIA 287 (431)
T ss_dssp -------HHHHHHHHHHHHHHHHTTTCCBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHHHHHhheeeEEEEEEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHH
Confidence 125677788888999999999999999999984 679999999999999999999999999999998
Q ss_pred HHhhhhcCCcchhhccccccccccCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011822 309 QLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSS 388 (476)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~ 388 (476)
+++. + +|. .++++| .+|+|.++|.+++++|| |+|++++ +|
T Consensus 288 ~~~~-----~-------~~~---------------~~~~~~--------~~~~y~~~y~~lii~Fs----~fy~~i~-~n 327 (431)
T 3din_C 288 SITN-----N-------ETL---------------KNLFRA--------GGFLYLLIYGLLVFFFT----YFYSVVI-FD 327 (431)
T ss_dssp TSST-----T-------CCC---------------CCCSST--------THHHHHHHHHHHHHHHH----HHHHTCT-TH
T ss_pred HHcc-----h-------HHH---------------HHHcCC--------CcHHHHHHHHHHHHHHH----HHHHHHh-cC
Confidence 7651 1 232 125554 46888888888877776 6788888 99
Q ss_pred HHHHHHHHHHcCCcccccccc-hHHHHHHhhchhhhhHHHHHHHHHHHhHHHHhh-hc-----ccchhHHHHHHHHHHHH
Q 011822 389 ARDVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAAAFGGMCIGALTVLADFMGA-IG-----SGTGILLAVTIIYQYFE 461 (476)
Q Consensus 389 p~~iA~~Lkk~g~~IpGiRpG-~T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~-~g-----~GtslLI~Vgv~~~~~~ 461 (476)
|||+||||||||++|||+||| +|+|||+|+++|+|++||+|++++|++|++++. .+ ||||+||+|||++|++|
T Consensus 328 p~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~ 407 (431)
T 3din_C 328 PREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAIKVNVWIGGTSALIAVGVALDIIQ 407 (431)
T ss_dssp HHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999985 33 89999999999999999
Q ss_pred HHHHHhhhcc
Q 011822 462 TFEKERASEL 471 (476)
Q Consensus 462 qi~~e~~~~~ 471 (476)
|+|++..++.
T Consensus 408 qi~s~~~~~~ 417 (431)
T 3din_C 408 QMETHMVMRH 417 (431)
T ss_dssp HHHHHCCCCC
T ss_pred HHHHHHHHHH
Confidence 9999986654
No 8
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=2.7e-91 Score=731.01 Aligned_cols=382 Identities=18% Similarity=0.326 Sum_probs=319.4
Q ss_pred cccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCC-------hhhHHHHHh---hhccccchhccchHHHhHHHHHHH
Q 011822 26 RKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGAD-------PFYWMRVIL---ASNRGTVMELGITPIVTSGLVMQL 95 (476)
Q Consensus 26 ~~~~l~~ri~~Tl~il~iy~lg~~IPlpGv~~~~~~~-------~~~~~~~i~---a~~~~SlfsLGI~PyItAsII~QL 95 (476)
..+|+|||++||++++++||+|+|||+||+|.++.++ .++++.+++ |++|+|+|||||+|||||||||||
T Consensus 8 ~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII~QL 87 (435)
T 3j01_A 8 GLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQL 87 (435)
T ss_dssp SSCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHHHHH
Confidence 4689999999999999999999999999999986543 244455666 368999999999999999999999
Q ss_pred Hhcc--chhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCccccchhHHHHHHHHHHHHHHHHHHH
Q 011822 96 LAGS--KIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMY-----GSVNQLGVGNAILIIVQLCFAGIIVICL 168 (476)
Q Consensus 96 l~~~--~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~~~~-----~~~~~~~~~~~~~~vl~L~aGs~i~~wL 168 (476)
|+.. ++++++||+|+||+|+|++|||+|+++|++||.+++.+... +...+.++...++++++|++|++++|||
T Consensus 88 L~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL 167 (435)
T 3j01_A 88 LTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWL 167 (435)
T ss_dssp HHHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 89999999999999999999999999999999999876421 1112334456788999999999999999
Q ss_pred HhhhhhccCcCcchHHHHHHHHHHHhhhhhcCccccccCCCcccchhHHHHHHHHHhcchhHHHHHHHHHhcCCccHHHH
Q 011822 169 DELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNL 248 (476)
Q Consensus 169 ~e~itkg~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 248 (476)
||+||| ||+|||+|++|++||++++++++.+..+ .. ..|... +. ..++.+
T Consensus 168 ~E~It~-~GiGnGiSLiI~~gI~~~lp~~~~~~~~--~~----~~~~~~-~~----------------------~~l~~~ 217 (435)
T 3j01_A 168 GEQITE-RGIGNGISIIIFAGIVAGLPPAIAHTIE--QA----RQGDLH-FL----------------------VLLLVA 217 (435)
T ss_dssp HHHSTT-SCCSSSHHHHHHHHHHHHSSTTSSSCCC--SS----SSTTSS-SH----------------------HHHHHH
T ss_pred HHHHHh-cCcccccHHHHHHHHHHHHHHHHHHHHH--HH----hcccch-HH----------------------HHHHHH
Confidence 999999 9999999999999999999666554311 10 011100 00 014566
Q ss_pred HHHHHHHHHHHhhcccEEeeeeeeccC-------CCCCccceeccccccchhHHHHHHHHHHHHHHHHHhhhhcCCcchh
Q 011822 249 LATVLIFLIVIYFQGFRVVLPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFV 321 (476)
Q Consensus 249 ~~~l~~~~~vV~l~~~~~rIPi~~~~~-------~~~~~~~PiKln~aGvmPiifasall~~p~~i~~~~~~~~~~~~~~ 321 (476)
++++++++++||+|++||||||||+|+ +|+++|+|+|+|||||||+|||||++++|+++++++.+. + +
T Consensus 218 ~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~-~-~--- 292 (435)
T 3j01_A 218 VLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGG-T-G--- 292 (435)
T ss_dssp HHHHHHHHHTTCCCCCSCCCCCCCCCCCSSCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSC-C-C---
T ss_pred HHHHHHHHHHHHhheeEEEEEEEehhhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCC-c-c---
Confidence 677788889999999999999999874 578999999999999999999999999999999875321 0 0
Q ss_pred hccccccccccCCCccccccceeecccCCcccchhccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCC
Q 011822 322 NLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQM 401 (476)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~i~~~~~pp~~~~~~~~~~~~~i~y~~lii~fs~~fs~~~~~~~g~~p~~iA~~Lkk~g~ 401 (476)
++|.. ++.++++| .+|+|.++|.+++++||++ |++++ +||||+||||||||+
T Consensus 293 ---~~~~~------------~~~~~l~~--------~~~~~~~~y~~lii~F~~f----yt~i~-~np~diA~~lkk~G~ 344 (435)
T 3j01_A 293 ---WNWLT------------TISLYLQP--------GQPLYVLLYASAIIFFCFF----YTALV-FNPRETADNLKKSGA 344 (435)
T ss_dssp ---SSCCS------------SSSCCCCS--------SGGGGTHHHHHHHHHHHHH----HHHHS-SCTTHHHHHTTSTTC
T ss_pred ---hhHHH------------HHHHHcCC--------CCcHHHHHHHHHHHHHHHH----HHHHc-cCHHHHHHHHHHcCC
Confidence 12322 24567775 4799999999999998865 55554 999999999999999
Q ss_pred cccccccc-hHHHHHHhhchhhhhHHHHHHHHHHHhHHHHhhh------cccchhHHHHHHHHHHHHHHHHHhhhc
Q 011822 402 VMPGHREA-NLQKELNRYIPTAAAFGGMCIGALTVLADFMGAI------GSGTGILLAVTIIYQYFETFEKERASE 470 (476)
Q Consensus 402 ~IpGiRpG-~T~~yL~~~i~~~t~~Ga~~l~~la~lp~~~~~~------g~GtslLI~Vgv~~~~~~qi~~e~~~~ 470 (476)
+|||+||| +|+|||+|+++|+|++||+|++++|++|++++.. +||||+||+|||++|++||+|+...++
T Consensus 345 ~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~l~~~ 420 (435)
T 3j01_A 345 FVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSS 420 (435)
T ss_dssp SSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHHHHHHHHTTSCCSSSSSSCCHHHHHTHHHHHHHHHHHHHHTSCC
T ss_pred cCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeecccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999864 589999999999999999999987443
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=52.37 E-value=8 Score=32.02 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=16.1
Q ss_pred cCCcccccccc-hHHHHHHhhch
Q 011822 399 QQMVMPGHREA-NLQKELNRYIP 420 (476)
Q Consensus 399 ~g~~IpGiRpG-~T~~yL~~~i~ 420 (476)
....|||+||| .-.+.+++..-
T Consensus 37 k~~~ipGFRkGKvP~~vi~k~yG 59 (109)
T 2nsc_A 37 QRVEIPGFRKGRIPKNVLKMKLG 59 (109)
T ss_dssp TTCCCTTSCTTCCCHHHHHHHHG
T ss_pred ccCCCCCcCCCCCCHHHHHHHHh
Confidence 45789999999 66666666553
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=44.55 E-value=12 Score=31.46 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=16.1
Q ss_pred cCCcccccccc-hHHHHHHhhch
Q 011822 399 QQMVMPGHREA-NLQKELNRYIP 420 (476)
Q Consensus 399 ~g~~IpGiRpG-~T~~yL~~~i~ 420 (476)
....|||+||| .-.+.+++..-
T Consensus 40 k~v~ipGFRkGKvP~~vi~k~yG 62 (121)
T 1p9y_A 40 KKVRIDGLRKGKVPMNIVAQRYG 62 (121)
T ss_dssp TTCCCTTSCTTCSCHHHHHHHHH
T ss_pred hhCccCCcCCCCCCHHHHHHHHH
Confidence 35799999999 66666666553
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=37.51 E-value=10 Score=31.55 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=15.6
Q ss_pred cCCcccccccc-hHHHHHHhhch
Q 011822 399 QQMVMPGHREA-NLQKELNRYIP 420 (476)
Q Consensus 399 ~g~~IpGiRpG-~T~~yL~~~i~ 420 (476)
....|||+||| .-.+.+++..-
T Consensus 36 k~~~ipGFRkGKvP~~vi~k~yG 58 (112)
T 2d3o_1 36 RDVRVPGFRPGKAPRKVIENRVG 58 (112)
T ss_dssp TTSCBTTBCTTCCCSTTHHHHTT
T ss_pred hhCCCCCcCCCCCCHHHHHHHhC
Confidence 35789999999 55555555554
Done!