BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011823
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%)
Query: 64 VMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFK 123
V+ SL + +VV+A+ V + LE +V+ V+ L++ +R +
Sbjct: 22 VLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETV-FDEVIMVDVLDSGDSAHLTLMKRPE 80
Query: 124 L--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVL 179
L TL KL+ W+L Y + V +D+D L L D+LF + A P F++G+FV
Sbjct: 81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVY 140
Query: 180 QPSETVFKDMIHELETGRENPDGADQGFIASYF 212
QPS + ++H L + + + DG DQG + ++F
Sbjct: 141 QPSVETYNQLLH-LASEQGSFDGGDQGILNTFF 172
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%)
Query: 64 VMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFK 123
V+ SL + +VV+A+ V + LE +V+ V+ L++ +R +
Sbjct: 22 VLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETV-FDEVIMVDVLDSGDSAHLTLMKRPE 80
Query: 124 L--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVL 179
L TL KL+ W+L Y + V +D+D L L D+LF + A P F++G+FV
Sbjct: 81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVY 140
Query: 180 QPSETVFKDMIHELETGRENPDGADQGFIASYF 212
QPS + ++H L + + + DG DQG + ++F
Sbjct: 141 QPSVETYNQLLH-LASEQGSFDGGDQGILNTFF 172
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 6/153 (3%)
Query: 64 VMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFK 123
V+ SL + +VV+A+ V + LE +V+ V+ L++ +R +
Sbjct: 43 VLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETV-FDEVIMVDVLDSGDSAHLTLMKRPE 101
Query: 124 L--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVL 179
L TL KL+ W+L Y + V +D+D L L D+LF + A P F++G+FV
Sbjct: 102 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVY 161
Query: 180 QPSETVFKDMIHELETGRENPDGADQGFIASYF 212
QPS + ++H L + + + DG DQG + ++F
Sbjct: 162 QPSVETYNQLLH-LASEQGSFDGGDQGILNTFF 193
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 101 KVVRVENLNNPYKDQANFDRRFKL--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQ 158
+V+ V+ L++ +R +L TL KL+ W+L Y + V +D+D L L D+LF+
Sbjct: 77 EVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFE 136
Query: 159 CGQFCAVFIN--PCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLL 216
+ A P F++G+FV QPS + ++H + + + + DG DQG + ++F
Sbjct: 137 REELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLH-VASEQGSFDGGDQGLLNTFF---- 191
Query: 217 DKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNS-VITFPGAPWLKPWY 275
S T + H LP Y + + Y L G N+ V+ F G KPW
Sbjct: 192 ------NSWATTDIRKH--LPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQT--KPWN 241
Query: 276 W 276
+
Sbjct: 242 Y 242
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 101 KVVRVENLNNPYKDQANFDRRFKL--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQ 158
+V+ V+ L++ +R +L TL KL+ W+L Y + V +D+D L L D+LF+
Sbjct: 77 EVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFE 136
Query: 159 CGQFCAVFIN--PCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLL 216
+ A P F++G+FV QPS + ++H + + + + DG DQG + ++F
Sbjct: 137 REELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLH-VASEQGSFDGGDQGLLNTFF---- 191
Query: 217 DKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNS-VITFPGAPWLKPWY 275
S T + H LP Y + + Y L G N+ V+ F G KPW
Sbjct: 192 ------NSWATTDIRKH--LPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQT--KPWN 241
Query: 276 W 276
+
Sbjct: 242 Y 242
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 101 KVVRVENLNNPYKDQANFDRRFKL--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQ 158
+V+ V+ L++ +R +L TL KL+ W+L Y + V +D+D L L D+LF+
Sbjct: 77 EVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFE 136
Query: 159 CGQFCAVFIN--PCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYF 212
+ A P F++G+FV QPS + ++H + + + + DG DQG + ++F
Sbjct: 137 REELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLH-VASEQGSFDGGDQGLLNTFF 191
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 18/156 (11%)
Query: 124 LTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVLQP 181
+TL KL+ W+L Y + V +D+D L L D+LF+ + A P F++G+FV QP
Sbjct: 82 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQP 141
Query: 182 SETVFKDMIHELETGRENPDGADQGFIASYFPDLLDKPMFHPSLNGTKLEGHYRLPLGYQ 241
S + ++H + + + + DG DQG + ++F S T + H LP Y
Sbjct: 142 SVETYNQLLH-VASEQGSFDGGDQGLLNTFF----------NSWATTDIRKH--LPFIYN 188
Query: 242 MDASYYYLRLRWSVPCGPNS-VITFPGAPWLKPWYW 276
+ + Y L G N+ V+ F G KPW +
Sbjct: 189 LSSISIYSYLPAFKAFGANAKVVHFLGQT--KPWNY 222
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 124 LTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVLQP 181
+TL KL+ W+L Y + V +D+D L L D+LF+ + A P F++G+FV QP
Sbjct: 88 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQP 147
Query: 182 SETVFKDMIHELETGRENPDGADQGFIASYF 212
S + ++H + + + + DG DQG + ++F
Sbjct: 148 SVETYNQLLH-VASEQGSFDGGDQGLLNTFF 177
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 64 VMIRSLVRLHVDADIVVIASLDVPLRWVQALEQEDGAKVVRVENLNNPYKDQANFDRRFK 123
V+ SL + +VV+A+ V + LE +V+ V+ L++ +R +
Sbjct: 22 VLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETV-FDEVIMVDVLDSGDSAHLTLMKRPE 80
Query: 124 L--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVL 179
L L KL+ W+L Y + V +D+D L L D+LF + A P F++G+FV
Sbjct: 81 LGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVY 140
Query: 180 QPSETVFKDMIHELETGRENPDGADQGFIASYF 212
QPS + ++H L + + + DG DQG + ++F
Sbjct: 141 QPSVETYNQLLH-LASEQGSFDGGDQGILNTFF 172
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 101 KVVRVENLNNPYKDQANFDRRFKLT--LNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQ 158
+V+ V+ L++ +R +L L KL+ W+L Y + V +D+D L L D+LF+
Sbjct: 77 EVITVDILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFE 136
Query: 159 CGQFCAVFIN--PCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYFPDLL 216
+ A P F++G+FV QPS + ++H + + + + DG DQG + ++F
Sbjct: 137 REELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLH-VASEQGSFDGGDQGLLNTFF---- 191
Query: 217 DKPMFHPSLNGTKLEGHYRLPLGYQMDASYYYLRLRWSVPCGPNS-VITFPGAPWLKPWY 275
S T + H LP Y + + Y L G N+ V+ F G KPW
Sbjct: 192 ------NSWATTDIRKH--LPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQT--KPWN 241
Query: 276 W 276
+
Sbjct: 242 Y 242
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 124 LTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVLQP 181
+TL KL+ W+L Y + V +D+D L L D+LF+ + A P F++G+FV QP
Sbjct: 102 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQP 161
Query: 182 SETVFKDMIH-ELETGRENPDGADQGFIASYF 212
S + ++H E G N G DQG + ++F
Sbjct: 162 SVETYNQLLHVASEQGSFN--GGDQGLLNTFF 191
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 101 KVVRVENLNNPYKDQANFDRRFKL--TLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQ 158
+V+ V+ L++ +R +L TL KL+ W+L Y + V +D+D L L D+LF+
Sbjct: 77 EVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFE 136
Query: 159 CGQFCAVFIN--PCIFHTGLFVLQPSETVFKDMIHELETGRENPDGADQGFIASYF 212
+ A P F++G+FV QPS + ++H + + + + G DQG + ++F
Sbjct: 137 REELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLH-VASEQGSFSGGDQGLLNTFF 191
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 124 LTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVLQP 181
+TL KL+ W+L Y + V +D+D L L D+LF+ + A P F++G+FV QP
Sbjct: 102 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQP 161
Query: 182 SETVFKDMIHELETGRENPDGADQGFIASYF 212
S + ++H + + + + G DQG + ++F
Sbjct: 162 SVETYNQLLH-VASEQGSFSGGDQGLLNTFF 191
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 124 LTLNKLYAWNLVDYDRVVMLDSDNLFLEKTDELFQCGQFCAVFIN--PCIFHTGLFVLQP 181
+TL KL+ W+L Y + V +D+D L L D+LF+ + A P F++G+FV QP
Sbjct: 102 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQP 161
Query: 182 SETVFKDMIHELETGRENPDGADQGFIASYF 212
S + ++H + + + + DG QG + ++F
Sbjct: 162 SVETYNQLLH-VASEQGSFDGGSQGLLNTFF 191
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 97 EDGAKVVRVEN--LNNPYKDQANFDRRFKLTLNKLYAWNLVDYDRVVMLDSDNLFLEKTD 154
EDGA +R+EN L P K + NF+ R LTL L + + M+D D+L ++ D
Sbjct: 528 EDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPI----QTKMIDVDSLTDKECD 583
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,927,558
Number of Sequences: 62578
Number of extensions: 582182
Number of successful extensions: 1173
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1145
Number of HSP's gapped (non-prelim): 15
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)