Query 011824
Match_columns 476
No_of_seqs 159 out of 1273
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.2E-69 2.5E-74 575.7 30.7 436 6-459 130-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 4.7E-53 1E-57 429.3 25.7 366 27-458 115-496 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.6E-45 3.6E-50 397.7 36.1 362 28-452 84-654 (654)
4 PF00854 PTR2: POT family; In 100.0 6.4E-46 1.4E-50 380.3 11.9 340 24-391 28-371 (372)
5 PRK15462 dipeptide/tripeptide 100.0 2.1E-42 4.6E-47 362.3 33.7 381 30-458 101-488 (493)
6 PRK10207 dipeptide/tripeptide 100.0 2.5E-37 5.4E-42 327.2 34.7 371 30-461 106-488 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 7.1E-37 1.5E-41 323.0 34.1 361 28-454 101-473 (475)
8 PRK09584 tppB putative tripept 100.0 1.8E-36 3.9E-41 321.8 33.5 369 29-460 112-490 (500)
9 PRK10489 enterobactin exporter 99.4 7.4E-10 1.6E-14 115.0 28.7 85 28-118 109-193 (417)
10 PRK11646 multidrug resistance 99.3 8.5E-10 1.8E-14 114.2 25.6 261 28-405 98-358 (400)
11 TIGR00893 2A0114 d-galactonate 99.3 3E-09 6.6E-14 107.7 26.7 86 28-119 81-166 (399)
12 PRK03545 putative arabinose tr 99.3 4.2E-09 9E-14 108.4 27.4 85 27-117 95-179 (390)
13 PRK10054 putative transporter; 99.2 1.6E-09 3.6E-14 111.9 22.9 83 29-118 96-178 (395)
14 PRK15402 multidrug efflux syst 99.2 1.8E-08 3.9E-13 104.1 29.4 85 28-118 100-184 (406)
15 TIGR00902 2A0127 phenyl propri 99.2 1E-08 2.3E-13 105.3 27.1 279 27-444 92-374 (382)
16 PRK09874 drug efflux system pr 99.2 5.7E-09 1.2E-13 107.5 25.0 84 28-118 106-189 (408)
17 TIGR00900 2A0121 H+ Antiporter 99.2 6.7E-09 1.5E-13 104.5 24.3 86 28-119 91-176 (365)
18 PRK11551 putative 3-hydroxyphe 99.2 1.7E-08 3.7E-13 104.1 27.7 85 27-117 101-185 (406)
19 PRK05122 major facilitator sup 99.2 5.9E-08 1.3E-12 99.9 30.1 78 29-112 112-189 (399)
20 cd06174 MFS The Major Facilita 99.2 1.5E-08 3.2E-13 101.0 24.8 260 28-446 86-349 (352)
21 PRK11128 putative 3-phenylprop 99.1 2.5E-08 5.5E-13 102.4 26.5 82 27-116 92-173 (382)
22 PRK10504 putative transporter; 99.1 6.9E-08 1.5E-12 101.8 30.2 87 28-120 97-183 (471)
23 TIGR00894 2A0114euk Na(+)-depe 99.1 3E-08 6.5E-13 104.5 25.6 85 28-118 130-215 (465)
24 TIGR00879 SP MFS transporter, 99.1 1.7E-08 3.6E-13 105.2 22.9 85 28-118 126-213 (481)
25 PRK10077 xylE D-xylose transpo 99.1 3.8E-08 8.3E-13 103.8 25.5 85 27-117 118-210 (479)
26 PF07690 MFS_1: Major Facilita 99.1 1.6E-08 3.5E-13 101.3 21.2 85 28-118 84-168 (352)
27 PF05977 MFS_3: Transmembrane 99.1 1.4E-07 2.9E-12 100.9 29.2 266 27-404 101-367 (524)
28 TIGR00892 2A0113 monocarboxyla 99.1 1.5E-08 3.2E-13 106.8 21.7 85 29-120 107-192 (455)
29 TIGR00710 efflux_Bcr_CflA drug 99.0 1E-07 2.2E-12 97.1 26.2 87 28-120 92-178 (385)
30 PRK06814 acylglycerophosphoeth 99.0 3.8E-08 8.1E-13 115.2 25.6 288 27-404 106-394 (1140)
31 PRK12382 putative transporter; 99.0 2E-07 4.3E-12 95.9 27.3 77 28-110 111-187 (392)
32 PRK11010 ampG muropeptide tran 99.0 4E-07 8.6E-12 97.0 29.3 85 27-117 105-190 (491)
33 TIGR00899 2A0120 sugar efflux 99.0 3E-07 6.6E-12 93.3 27.3 88 28-119 86-173 (375)
34 TIGR00901 2A0125 AmpG-related 99.0 9.3E-08 2E-12 96.9 23.4 86 28-119 82-175 (356)
35 PRK10213 nepI ribonucleoside t 99.0 4E-07 8.6E-12 94.1 27.2 83 27-115 106-188 (394)
36 TIGR00792 gph sugar (Glycoside 99.0 2E-07 4.4E-12 97.0 25.2 85 29-118 99-190 (437)
37 TIGR00711 efflux_EmrB drug res 99.0 1.2E-07 2.6E-12 100.0 23.3 87 27-119 88-174 (485)
38 TIGR00895 2A0115 benzoate tran 99.0 3E-07 6.4E-12 93.6 25.2 84 28-117 104-187 (398)
39 TIGR00926 2A1704 Peptide:H+ sy 98.9 2.9E-08 6.4E-13 108.4 18.5 253 28-325 81-342 (654)
40 PRK15011 sugar efflux transpor 98.9 6.4E-07 1.4E-11 92.4 27.2 72 44-119 120-191 (393)
41 PRK14995 methyl viologen resis 98.9 2E-07 4.4E-12 99.3 24.1 88 27-119 92-179 (495)
42 PRK11102 bicyclomycin/multidru 98.9 8.3E-07 1.8E-11 90.4 27.7 85 28-118 78-162 (377)
43 PRK11663 regulatory protein Uh 98.9 6.1E-07 1.3E-11 93.9 26.5 81 28-114 110-190 (434)
44 PRK12307 putative sialic acid 98.9 5.9E-07 1.3E-11 93.3 25.8 79 27-111 104-182 (426)
45 TIGR00898 2A0119 cation transp 98.9 1.5E-06 3.3E-11 92.5 28.9 82 28-118 179-260 (505)
46 PRK09848 glucuronide transport 98.9 7.9E-07 1.7E-11 93.4 25.4 88 297-405 293-387 (448)
47 TIGR01301 GPH_sucrose GPH fami 98.9 1.5E-06 3.3E-11 91.6 26.5 302 30-405 115-443 (477)
48 TIGR00890 2A0111 Oxalate/Forma 98.8 4E-07 8.7E-12 91.8 21.6 85 28-119 90-174 (377)
49 PRK10473 multidrug efflux syst 98.8 2.7E-06 5.8E-11 87.5 28.0 85 28-118 90-174 (392)
50 PRK08633 2-acyl-glycerophospho 98.8 1.5E-06 3.2E-11 101.8 28.3 64 28-97 102-165 (1146)
51 PRK03633 putative MFS family t 98.8 2.1E-06 4.5E-11 88.1 25.9 72 27-104 92-163 (381)
52 PRK11273 glpT sn-glycerol-3-ph 98.8 4E-06 8.8E-11 88.2 28.4 83 28-116 119-202 (452)
53 PRK11902 ampG muropeptide tran 98.8 8.5E-06 1.8E-10 84.2 30.3 84 28-117 93-177 (402)
54 TIGR01299 synapt_SV2 synaptic 98.8 3E-06 6.5E-11 94.0 28.3 85 28-118 254-351 (742)
55 PRK11195 lysophospholipid tran 98.8 3E-06 6.6E-11 87.5 26.8 76 33-115 92-167 (393)
56 PRK11652 emrD multidrug resist 98.8 5.8E-06 1.3E-10 85.0 28.7 83 28-116 95-177 (394)
57 PRK09705 cynX putative cyanate 98.8 3.7E-06 8.1E-11 86.7 27.2 80 28-114 96-176 (393)
58 TIGR00883 2A0106 metabolite-pr 98.8 1.3E-06 2.9E-11 88.6 22.7 80 31-116 98-185 (394)
59 TIGR00903 2A0129 major facilit 98.8 5E-06 1.1E-10 85.3 26.2 82 28-116 78-159 (368)
60 PRK15403 multidrug efflux syst 98.8 7.4E-06 1.6E-10 85.2 27.9 85 27-117 102-186 (413)
61 PRK09528 lacY galactoside perm 98.8 1E-06 2.2E-11 91.6 21.3 134 262-447 267-401 (420)
62 PRK10642 proline/glycine betai 98.7 1.3E-05 2.9E-10 85.2 29.9 74 31-110 120-201 (490)
63 PRK10091 MFS transport protein 98.7 5.1E-06 1.1E-10 85.3 25.9 84 27-116 89-172 (382)
64 PRK03893 putative sialic acid 98.7 1.5E-06 3.3E-11 92.1 22.4 78 28-111 107-184 (496)
65 TIGR00788 fbt folate/biopterin 98.7 7.6E-07 1.6E-11 94.3 19.4 85 29-117 120-204 (468)
66 TIGR00881 2A0104 phosphoglycer 98.7 1.3E-06 2.9E-11 88.1 20.5 86 28-119 82-168 (379)
67 KOG2532 Permease of the major 98.7 1.5E-06 3.2E-11 91.6 20.5 303 31-449 130-447 (466)
68 PRK11043 putative transporter; 98.7 1E-05 2.2E-10 83.3 26.6 85 28-118 93-177 (401)
69 TIGR00889 2A0110 nucleoside tr 98.7 1.1E-05 2.3E-10 84.2 26.6 105 347-466 311-416 (418)
70 PRK09556 uhpT sugar phosphate 98.7 2.5E-06 5.4E-11 90.1 22.1 83 27-115 120-205 (467)
71 TIGR00891 2A0112 putative sial 98.7 4E-06 8.6E-11 85.7 22.8 82 28-115 99-182 (405)
72 TIGR02718 sider_RhtX_FptX side 98.7 2.1E-05 4.6E-10 80.8 27.6 51 69-119 131-181 (390)
73 PLN00028 nitrate transmembrane 98.7 7E-06 1.5E-10 87.1 24.3 84 28-118 123-215 (476)
74 PRK03699 putative transporter; 98.6 2.4E-05 5.2E-10 80.6 27.6 86 27-118 93-179 (394)
75 COG2814 AraJ Arabinose efflux 98.6 1.7E-05 3.8E-10 80.9 25.7 89 26-120 98-186 (394)
76 PRK10406 alpha-ketoglutarate t 98.6 3.8E-05 8.2E-10 80.3 28.4 79 29-113 124-210 (432)
77 PF13347 MFS_2: MFS/sugar tran 98.6 9E-06 1.9E-10 84.9 23.1 306 29-453 103-425 (428)
78 PRK09669 putative symporter Ya 98.6 1.6E-05 3.4E-10 83.5 24.9 63 345-407 320-389 (444)
79 PRK09952 shikimate transporter 98.6 9.3E-05 2E-09 77.6 30.5 76 31-112 127-210 (438)
80 TIGR00712 glpT glycerol-3-phos 98.6 2.6E-05 5.7E-10 81.6 26.0 85 28-118 117-202 (438)
81 PRK10429 melibiose:sodium symp 98.6 1.6E-05 3.4E-10 84.3 24.5 62 344-405 324-392 (473)
82 TIGR00897 2A0118 polyol permea 98.5 9.9E-05 2.1E-09 76.3 29.0 74 28-107 104-178 (402)
83 TIGR00882 2A0105 oligosacchari 98.5 1.8E-05 3.9E-10 81.5 22.9 62 343-404 306-368 (396)
84 COG2271 UhpC Sugar phosphate p 98.5 9.3E-06 2E-10 82.5 19.5 89 28-122 116-207 (448)
85 TIGR00896 CynX cyanate transpo 98.5 4.2E-05 9.1E-10 77.4 24.1 80 28-114 86-167 (355)
86 PRK15075 citrate-proton sympor 98.5 4.7E-05 1E-09 79.6 25.1 73 31-109 119-199 (434)
87 KOG1330 Sugar transporter/spin 98.4 5.8E-07 1.3E-11 92.0 8.6 88 27-120 119-207 (493)
88 TIGR01272 gluP glucose/galacto 98.4 0.00022 4.7E-09 71.4 26.1 87 26-118 7-109 (310)
89 TIGR02332 HpaX 4-hydroxyphenyl 98.4 0.00018 4E-09 74.7 25.2 86 27-118 94-185 (412)
90 PRK11462 putative transporter; 98.2 0.00058 1.3E-08 72.2 26.1 84 30-118 110-200 (460)
91 KOG2533 Permease of the major 98.2 0.00038 8.3E-09 73.8 23.9 85 28-118 133-223 (495)
92 PF03209 PUCC: PUCC protein; 98.2 0.0023 5.1E-08 65.3 28.1 62 344-405 301-362 (403)
93 TIGR00887 2A0109 phosphate:H+ 98.2 0.0015 3.4E-08 69.6 28.6 80 29-114 115-217 (502)
94 TIGR00885 fucP L-fucose:H+ sym 98.1 0.00073 1.6E-08 70.3 23.3 85 27-117 92-202 (410)
95 PRK10133 L-fucose transporter; 98.0 0.0026 5.6E-08 66.8 24.9 63 27-95 115-177 (438)
96 PRK03545 putative arabinose tr 97.9 0.00036 7.7E-09 71.7 16.8 83 299-404 75-157 (390)
97 PF03092 BT1: BT1 family; Int 97.9 0.00049 1.1E-08 72.1 17.2 87 27-117 84-170 (433)
98 KOG1330 Sugar transporter/spin 97.9 1.1E-05 2.4E-10 82.8 4.3 143 261-455 72-215 (493)
99 TIGR00886 2A0108 nitrite extru 97.8 0.00046 1E-08 69.7 15.5 78 28-112 90-178 (366)
100 PRK10213 nepI ribonucleoside t 97.8 0.0013 2.9E-08 67.8 18.9 109 262-404 60-168 (394)
101 PF07690 MFS_1: Major Facilita 97.8 0.00065 1.4E-08 67.8 15.8 132 261-444 36-167 (352)
102 TIGR00891 2A0112 putative sial 97.8 0.00091 2E-08 68.2 17.1 110 261-404 51-160 (405)
103 TIGR00710 efflux_Bcr_CflA drug 97.8 0.00089 1.9E-08 68.0 16.5 110 261-404 44-153 (385)
104 TIGR00893 2A0114 d-galactonate 97.8 0.00056 1.2E-08 69.0 14.9 111 260-404 32-142 (399)
105 TIGR00900 2A0121 H+ Antiporter 97.8 0.0015 3.4E-08 65.3 18.0 115 261-404 38-152 (365)
106 PF11700 ATG22: Vacuole efflux 97.8 0.033 7.1E-07 59.2 28.4 63 344-408 382-444 (477)
107 PRK11551 putative 3-hydroxyphe 97.8 0.002 4.4E-08 66.3 19.0 109 261-403 54-162 (406)
108 PRK15034 nitrate/nitrite trans 97.8 0.019 4.2E-07 60.5 26.3 60 27-93 126-185 (462)
109 TIGR00805 oat sodium-independe 97.7 0.002 4.4E-08 70.8 19.0 86 28-119 171-278 (633)
110 PF01306 LacY_symp: LacY proto 97.7 0.009 2E-07 61.8 21.9 63 342-404 310-373 (412)
111 TIGR02332 HpaX 4-hydroxyphenyl 97.7 0.0031 6.6E-08 65.6 19.0 109 262-404 48-156 (412)
112 COG2211 MelB Na+/melibiose sym 97.6 0.011 2.5E-07 61.8 22.0 63 28-95 111-173 (467)
113 TIGR00711 efflux_EmrB drug res 97.6 0.0031 6.6E-08 66.5 17.5 111 260-404 40-150 (485)
114 PRK10091 MFS transport protein 97.6 0.0032 6.9E-08 64.6 17.0 111 260-404 41-151 (382)
115 PRK10473 multidrug efflux syst 97.6 0.0029 6.3E-08 64.9 16.6 109 262-404 43-151 (392)
116 PRK10054 putative transporter; 97.5 0.0049 1.1E-07 63.6 18.2 110 261-404 47-156 (395)
117 TIGR00880 2_A_01_02 Multidrug 97.5 0.0066 1.4E-07 51.4 16.1 61 344-404 51-111 (141)
118 PF03825 Nuc_H_symport: Nucleo 97.5 0.054 1.2E-06 56.2 25.4 91 348-450 305-396 (400)
119 PRK11663 regulatory protein Uh 97.5 0.0054 1.2E-07 64.1 18.3 109 262-404 63-171 (434)
120 COG2223 NarK Nitrate/nitrite t 97.5 0.023 5E-07 58.2 21.7 86 30-123 106-194 (417)
121 PRK14995 methyl viologen resis 97.5 0.0096 2.1E-07 63.5 20.3 111 260-404 44-155 (495)
122 PRK09874 drug efflux system pr 97.5 0.011 2.4E-07 60.7 19.4 108 262-404 59-166 (408)
123 PRK15403 multidrug efflux syst 97.4 0.0057 1.2E-07 63.6 17.1 62 343-404 103-164 (413)
124 KOG2615 Permease of the major 97.4 0.0091 2E-07 60.4 17.4 56 348-403 356-411 (451)
125 COG2814 AraJ Arabinose efflux 97.4 0.0079 1.7E-07 61.7 17.3 138 260-450 51-189 (394)
126 TIGR00895 2A0115 benzoate tran 97.4 0.0014 3E-08 66.6 12.0 61 344-404 105-165 (398)
127 PRK11646 multidrug resistance 97.4 0.0092 2E-07 61.7 18.3 81 301-404 79-159 (400)
128 PRK03633 putative MFS family t 97.4 0.016 3.4E-07 59.3 19.1 109 261-403 45-153 (381)
129 PRK03699 putative transporter; 97.4 0.016 3.4E-07 59.6 19.1 108 262-403 47-154 (394)
130 TIGR00879 SP MFS transporter, 97.4 0.0022 4.8E-08 66.6 12.9 109 261-400 75-183 (481)
131 PRK05122 major facilitator sup 97.3 0.0006 1.3E-08 70.1 8.3 94 29-128 302-395 (399)
132 PRK12307 putative sialic acid 97.3 0.011 2.4E-07 61.2 17.8 109 261-403 57-165 (426)
133 TIGR00881 2A0104 phosphoglycer 97.3 0.0016 3.5E-08 65.5 11.2 107 261-401 34-141 (379)
134 KOG3762 Predicted transporter 97.3 0.003 6.4E-08 66.4 13.0 112 300-456 438-554 (618)
135 PRK11102 bicyclomycin/multidru 97.3 0.0071 1.5E-07 61.4 16.0 108 263-404 32-139 (377)
136 PRK10504 putative transporter; 97.3 0.017 3.8E-07 60.7 19.3 61 344-404 98-158 (471)
137 KOG3764 Vesicular amine transp 97.3 0.0012 2.5E-08 67.0 9.2 146 260-457 109-255 (464)
138 COG2807 CynX Cyanate permease 97.3 0.16 3.4E-06 51.4 23.9 86 28-120 98-184 (395)
139 PRK09705 cynX putative cyanate 97.3 0.0084 1.8E-07 61.8 15.9 108 261-403 48-155 (393)
140 TIGR00805 oat sodium-independe 97.3 0.0022 4.8E-08 70.6 12.1 133 261-404 72-232 (633)
141 TIGR00885 fucP L-fucose:H+ sym 97.3 0.023 4.9E-07 59.1 19.0 114 260-404 41-154 (410)
142 PF06609 TRI12: Fungal trichot 97.2 0.086 1.9E-06 57.2 23.3 92 22-120 124-215 (599)
143 TIGR00880 2_A_01_02 Multidrug 97.2 0.0012 2.6E-08 56.1 7.6 86 28-119 50-135 (141)
144 TIGR01299 synapt_SV2 synaptic 97.2 0.029 6.2E-07 62.7 20.2 109 261-403 206-314 (742)
145 PRK09556 uhpT sugar phosphate 97.2 0.0036 7.9E-08 66.1 12.1 87 299-403 95-181 (467)
146 TIGR00894 2A0114euk Na(+)-depe 97.2 0.0045 9.8E-08 65.1 12.7 61 344-404 131-191 (465)
147 PRK10489 enterobactin exporter 97.1 0.01 2.2E-07 61.4 15.0 116 260-404 55-170 (417)
148 TIGR00890 2A0111 Oxalate/Forma 97.1 0.018 3.9E-07 57.8 16.4 107 261-402 42-148 (377)
149 TIGR00886 2A0108 nitrite extru 97.1 0.05 1.1E-06 54.7 19.6 108 260-401 40-147 (366)
150 PRK15402 multidrug efflux syst 97.1 0.044 9.5E-07 56.4 19.2 61 344-404 101-161 (406)
151 PRK03893 putative sialic acid 97.1 0.045 9.8E-07 57.9 19.4 61 344-404 108-168 (496)
152 TIGR00924 yjdL_sub1_fam amino 97.1 0.0086 1.9E-07 63.6 13.8 113 300-453 81-196 (475)
153 KOG1237 H+/oligopeptide sympor 97.1 0.0017 3.7E-08 70.2 8.3 214 31-318 61-276 (571)
154 cd06174 MFS The Major Facilita 97.1 0.016 3.6E-07 57.3 15.0 110 261-404 38-147 (352)
155 KOG0569 Permease of the major 97.0 0.15 3.3E-06 53.9 22.5 88 27-120 114-203 (485)
156 TIGR00712 glpT glycerol-3-phos 97.0 0.023 4.9E-07 59.5 16.2 59 344-402 118-176 (438)
157 PRK12382 putative transporter; 97.0 0.041 8.8E-07 56.4 17.6 118 261-404 55-172 (392)
158 PRK11010 ampG muropeptide tran 97.0 0.099 2.2E-06 55.7 20.7 107 276-404 60-167 (491)
159 COG0738 FucP Fucose permease [ 96.9 0.4 8.7E-06 49.1 23.2 67 24-96 99-165 (422)
160 KOG2504 Monocarboxylate transp 96.9 0.28 6.1E-06 52.5 23.5 92 347-455 391-482 (509)
161 PRK11273 glpT sn-glycerol-3-ph 96.9 0.047 1E-06 57.3 17.6 106 264-399 70-175 (452)
162 PRK10077 xylE D-xylose transpo 96.9 0.02 4.4E-07 60.2 14.5 119 262-402 60-178 (479)
163 TIGR00903 2A0129 major facilit 96.9 0.05 1.1E-06 55.8 16.8 87 343-448 78-164 (368)
164 PRK11902 ampG muropeptide tran 96.8 0.046 9.9E-07 56.4 16.6 84 301-404 71-154 (402)
165 TIGR00898 2A0119 cation transp 96.8 0.0094 2E-07 63.4 11.6 108 261-402 131-238 (505)
166 TIGR00887 2A0109 phosphate:H+ 96.8 0.069 1.5E-06 56.9 18.2 61 343-403 114-174 (502)
167 PTZ00207 hypothetical protein; 96.8 0.09 1.9E-06 57.2 18.6 119 297-452 90-208 (591)
168 PRK11043 putative transporter; 96.7 0.076 1.6E-06 54.5 17.3 61 344-404 94-154 (401)
169 PRK11652 emrD multidrug resist 96.7 0.11 2.5E-06 53.1 18.4 61 344-404 96-156 (394)
170 TIGR00892 2A0113 monocarboxyla 96.7 0.038 8.3E-07 58.2 15.2 78 352-448 116-193 (455)
171 KOG2816 Predicted transporter 96.6 0.053 1.2E-06 57.2 15.0 84 300-407 310-393 (463)
172 PRK08633 2-acyl-glycerophospho 96.6 0.063 1.4E-06 63.1 17.2 61 344-404 103-163 (1146)
173 KOG3764 Vesicular amine transp 96.6 0.19 4.2E-06 51.3 17.9 89 27-120 157-245 (464)
174 TIGR00806 rfc RFC reduced fola 96.5 0.32 7E-06 51.3 20.0 60 343-403 114-173 (511)
175 KOG3626 Organic anion transpor 96.5 0.013 2.9E-07 64.2 10.2 153 298-456 162-350 (735)
176 PRK10133 L-fucose transporter; 96.5 0.22 4.8E-06 52.2 19.3 110 262-402 66-175 (438)
177 COG2270 Permeases of the major 96.5 0.61 1.3E-05 48.1 21.3 87 299-408 319-405 (438)
178 TIGR00901 2A0125 AmpG-related 96.5 0.13 2.9E-06 51.7 16.8 63 342-404 81-143 (356)
179 TIGR00899 2A0120 sugar efflux 96.5 0.17 3.8E-06 50.9 17.5 89 344-450 87-177 (375)
180 TIGR01301 GPH_sucrose GPH fami 96.4 0.13 2.9E-06 54.5 16.5 169 216-403 5-175 (477)
181 PF03137 OATP: Organic Anion T 96.4 0.00054 1.2E-08 73.7 -1.6 153 297-455 67-256 (539)
182 TIGR00897 2A0118 polyol permea 96.3 0.27 5.9E-06 50.7 18.3 112 261-402 52-164 (402)
183 KOG3626 Organic anion transpor 96.3 1.5 3.2E-05 48.6 24.1 87 29-121 237-342 (735)
184 PRK10207 dipeptide/tripeptide 96.3 0.091 2E-06 56.0 14.8 84 299-404 82-167 (489)
185 PRK11195 lysophospholipid tran 96.3 0.25 5.5E-06 50.8 17.6 108 260-404 41-148 (393)
186 TIGR00883 2A0106 metabolite-pr 96.3 0.045 9.8E-07 55.2 11.8 90 300-404 67-156 (394)
187 TIGR00889 2A0110 nucleoside tr 96.2 0.011 2.3E-07 61.7 7.2 86 29-120 308-400 (418)
188 TIGR00896 CynX cyanate transpo 96.1 0.2 4.3E-06 50.5 15.7 108 260-403 38-145 (355)
189 KOG2532 Permease of the major 96.0 0.085 1.9E-06 55.8 12.9 116 297-450 102-217 (466)
190 PRK06814 acylglycerophosphoeth 96.0 0.17 3.6E-06 59.7 16.7 62 343-404 107-168 (1140)
191 KOG2533 Permease of the major 96.0 0.32 6.8E-06 51.9 17.0 88 345-444 135-222 (495)
192 KOG3098 Uncharacterized conser 96.0 1.5 3.2E-05 46.2 21.6 88 348-458 357-444 (461)
193 PRK09584 tppB putative tripept 95.9 0.27 5.9E-06 52.5 16.4 115 300-454 90-206 (500)
194 PLN00028 nitrate transmembrane 95.9 0.46 9.9E-06 50.4 17.8 55 345-400 125-179 (476)
195 TIGR00806 rfc RFC reduced fola 95.7 3.4 7.4E-05 43.8 24.6 84 28-119 114-200 (511)
196 PRK10406 alpha-ketoglutarate t 95.7 0.36 7.7E-06 50.3 16.0 107 275-403 77-183 (432)
197 PF05977 MFS_3: Transmembrane 95.7 0.49 1.1E-05 50.9 16.9 115 260-403 48-162 (524)
198 KOG0254 Predicted transporter 95.6 1.1 2.3E-05 48.0 19.5 84 28-117 141-225 (513)
199 PRK15011 sugar efflux transpor 95.6 1.1 2.4E-05 45.9 18.7 88 345-450 106-195 (393)
200 PRK15034 nitrate/nitrite trans 95.5 1.2 2.7E-05 47.0 19.0 116 258-400 68-187 (462)
201 PRK10642 proline/glycine betai 95.4 0.59 1.3E-05 49.7 16.5 107 275-403 71-177 (490)
202 COG2271 UhpC Sugar phosphate p 95.2 0.42 9.2E-06 49.3 13.7 84 295-401 91-174 (448)
203 KOG4686 Predicted sugar transp 95.2 1.5 3.2E-05 43.2 16.6 87 350-450 358-444 (459)
204 COG2807 CynX Cyanate permease 95.2 0.87 1.9E-05 46.2 15.6 134 295-470 74-208 (395)
205 TIGR00792 gph sugar (Glycoside 95.1 0.12 2.6E-06 53.5 10.1 117 263-402 41-158 (437)
206 PF03209 PUCC: PUCC protein; 95.0 1.6 3.6E-05 44.9 17.1 56 347-402 92-147 (403)
207 TIGR01272 gluP glucose/galacto 94.8 0.33 7.3E-06 48.4 11.8 63 342-404 8-70 (310)
208 PRK15462 dipeptide/tripeptide 94.7 1.1 2.3E-05 48.0 15.8 85 351-453 107-193 (493)
209 KOG0255 Synaptic vesicle trans 94.7 7.2 0.00016 41.6 30.7 83 26-117 168-250 (521)
210 PRK09952 shikimate transporter 94.7 0.64 1.4E-05 48.6 14.0 110 273-404 76-185 (438)
211 TIGR00882 2A0105 oligosacchari 94.6 0.73 1.6E-05 47.2 14.1 55 347-403 102-156 (396)
212 KOG2325 Predicted transporter/ 94.4 0.49 1.1E-05 50.0 12.0 156 261-454 75-234 (488)
213 KOG2563 Permease of the major 94.2 2.6 5.6E-05 44.0 16.5 112 349-474 364-475 (480)
214 PRK09528 lacY galactoside perm 94.2 0.087 1.9E-06 54.6 6.1 86 28-119 314-400 (420)
215 TIGR00902 2A0127 phenyl propri 93.8 1.2 2.6E-05 45.4 13.6 59 344-404 94-152 (382)
216 PRK11128 putative 3-phenylprop 93.8 1.2 2.6E-05 45.5 13.5 58 344-403 94-151 (382)
217 PF11700 ATG22: Vacuole efflux 93.6 0.27 5.7E-06 52.3 8.5 86 28-119 379-465 (477)
218 PF06609 TRI12: Fungal trichot 93.5 2.9 6.2E-05 45.7 16.2 120 248-403 70-189 (599)
219 PF00854 PTR2: POT family; In 93.2 0.79 1.7E-05 46.8 11.1 129 300-460 3-134 (372)
220 KOG0254 Predicted transporter 92.3 2.4 5.1E-05 45.4 13.7 105 260-398 92-196 (513)
221 KOG2325 Predicted transporter/ 92.2 1.5 3.3E-05 46.4 11.5 58 350-407 394-451 (488)
222 TIGR02718 sider_RhtX_FptX side 92.1 9.8 0.00021 38.7 17.6 87 344-448 97-183 (390)
223 PRK09669 putative symporter Ya 91.5 0.59 1.3E-05 48.9 7.8 73 28-100 318-391 (444)
224 PRK11462 putative transporter; 91.3 5 0.00011 42.3 14.6 58 344-401 109-167 (460)
225 PRK15075 citrate-proton sympor 91.2 5.4 0.00012 41.5 14.7 57 347-403 120-176 (434)
226 COG0738 FucP Fucose permease [ 91.0 14 0.00031 38.1 16.6 86 296-401 76-161 (422)
227 PTZ00207 hypothetical protein; 90.9 28 0.00061 38.1 26.7 77 27-112 118-195 (591)
228 PF05978 UNC-93: Ion channel r 90.7 9.6 0.00021 34.0 13.6 62 343-404 88-149 (156)
229 COG2223 NarK Nitrate/nitrite t 88.8 6.7 0.00015 40.5 12.3 117 254-400 43-159 (417)
230 PF06813 Nodulin-like: Nodulin 88.5 8.7 0.00019 37.1 12.5 121 297-453 65-185 (250)
231 PRK10429 melibiose:sodium symp 87.8 7.8 0.00017 40.9 12.9 57 343-399 105-162 (473)
232 PF00083 Sugar_tr: Sugar (and 87.0 0.00039 8.4E-09 72.8 -20.3 80 28-113 101-183 (451)
233 KOG0569 Permease of the major 86.6 20 0.00043 38.2 14.7 58 344-401 116-173 (485)
234 TIGR00939 2a57 Equilibrative N 86.5 9 0.00019 40.3 12.2 125 295-449 72-196 (437)
235 PF03092 BT1: BT1 family; Int 86.4 12 0.00025 39.3 13.0 55 349-404 91-148 (433)
236 PRK09848 glucuronide transport 86.3 3.2 7E-05 43.3 8.8 91 28-118 318-424 (448)
237 KOG2615 Permease of the major 86.1 6.1 0.00013 40.5 10.0 108 263-405 74-181 (451)
238 PF13347 MFS_2: MFS/sugar tran 85.5 5.7 0.00012 41.2 10.2 117 268-401 40-161 (428)
239 PHA03049 IMV membrane protein; 84.9 1.5 3.3E-05 32.5 3.8 41 431-471 6-47 (68)
240 PF02487 CLN3: CLN3 protein; 84.7 16 0.00034 37.9 12.6 82 295-404 86-167 (402)
241 PF03825 Nuc_H_symport: Nucleo 84.5 3.3 7.1E-05 43.0 7.7 83 33-121 305-394 (400)
242 KOG2816 Predicted transporter 84.3 39 0.00084 35.9 15.7 101 267-404 72-172 (463)
243 KOG2504 Monocarboxylate transp 84.0 0.62 1.3E-05 50.0 2.1 87 30-122 389-476 (509)
244 COG2211 MelB Na+/melibiose sym 84.0 7.8 0.00017 40.9 10.2 102 342-457 110-212 (467)
245 PF03137 OATP: Organic Anion T 83.8 0.28 6.1E-06 53.0 -0.6 93 28-126 140-254 (539)
246 KOG0255 Synaptic vesicle trans 83.5 13 0.00029 39.6 12.2 86 342-448 169-254 (521)
247 KOG4686 Predicted sugar transp 79.3 3.6 7.8E-05 40.6 5.2 77 33-115 356-435 (459)
248 PF01891 CbiM: Cobalt uptake s 73.0 61 0.0013 30.1 11.7 99 264-375 106-204 (205)
249 KOG3574 Acetyl-CoA transporter 71.0 24 0.00052 36.4 8.7 62 346-407 371-433 (510)
250 COG5336 Uncharacterized protei 68.3 37 0.0008 28.2 7.7 31 373-403 35-65 (116)
251 PF05631 DUF791: Protein of un 68.2 20 0.00043 36.5 7.6 103 19-122 111-216 (354)
252 KOG0252 Inorganic phosphate tr 67.0 13 0.00028 39.2 6.1 155 256-449 80-242 (538)
253 PRK07331 cobalt transport prot 64.4 1.1E+02 0.0023 30.9 11.9 106 265-377 108-220 (322)
254 KOG4332 Predicted sugar transp 61.8 1.5E+02 0.0034 29.3 11.9 102 20-122 115-220 (454)
255 COG3104 PTR2 Dipeptide/tripept 59.0 33 0.00073 36.4 7.5 124 298-460 92-217 (498)
256 TIGR00788 fbt folate/biopterin 57.8 27 0.00059 36.9 6.9 65 36-106 358-427 (468)
257 KOG0637 Sucrose transporter an 57.5 59 0.0013 34.3 8.8 168 215-401 32-200 (498)
258 COG2270 Permeases of the major 57.0 18 0.0004 37.6 5.1 82 32-119 344-426 (438)
259 PF03219 TLC: TLC ATP/ADP tran 56.6 1.6E+02 0.0036 31.4 12.4 28 69-96 178-205 (491)
260 COG0477 ProP Permeases of the 54.0 44 0.00096 31.0 7.1 79 28-111 93-174 (338)
261 KOG0252 Inorganic phosphate tr 51.5 44 0.00095 35.4 6.8 67 50-116 63-129 (538)
262 PF14007 YtpI: YtpI-like prote 51.4 61 0.0013 26.0 6.2 52 78-130 35-86 (89)
263 PF01306 LacY_symp: LacY proto 51.1 73 0.0016 33.2 8.5 28 260-287 46-73 (412)
264 PF06645 SPC12: Microsomal sig 50.0 65 0.0014 24.9 6.1 54 71-127 8-61 (76)
265 PRK11715 inner membrane protei 49.9 3.3E+02 0.0072 28.6 13.5 81 301-401 304-395 (436)
266 PF03219 TLC: TLC ATP/ADP tran 47.6 3.8E+02 0.0083 28.7 18.7 54 352-405 148-205 (491)
267 PRK08319 cobalt transport prot 47.2 2.5E+02 0.0055 26.5 10.9 31 348-378 183-213 (224)
268 PF06123 CreD: Inner membrane 45.9 3.8E+02 0.0083 28.1 13.7 46 303-368 300-345 (430)
269 PF05961 Chordopox_A13L: Chord 42.3 49 0.0011 24.9 4.0 37 432-468 7-43 (68)
270 TIGR00123 cbiM cobalamin biosy 41.2 3.1E+02 0.0067 25.8 11.3 32 346-377 181-212 (214)
271 PF00083 Sugar_tr: Sugar (and 40.8 3.6 7.7E-05 42.8 -3.1 83 45-138 365-447 (451)
272 KOG1479 Nucleoside transporter 40.1 4.5E+02 0.0098 27.4 14.7 83 348-448 121-203 (406)
273 PF06963 FPN1: Ferroportin1 (F 39.7 4.7E+02 0.01 27.5 19.9 61 342-402 354-414 (432)
274 PF15050 SCIMP: SCIMP protein 39.7 18 0.00039 30.4 1.6 25 428-452 6-35 (133)
275 PF01102 Glycophorin_A: Glycop 36.1 43 0.00093 28.6 3.3 26 430-455 70-95 (122)
276 PRK11909 cobalt transport prot 34.9 4.1E+02 0.0088 25.3 12.3 35 343-377 182-217 (230)
277 PRK06265 cobalt transport prot 34.3 3.8E+02 0.0082 24.8 11.4 95 265-378 102-198 (199)
278 KOG4112 Signal peptidase subun 33.1 1.4E+02 0.0031 24.1 5.5 50 75-127 27-76 (101)
279 PF01034 Syndecan: Syndecan do 31.6 17 0.00036 27.1 0.1 11 461-471 41-51 (64)
280 TIGR00769 AAA ADP/ATP carrier 30.6 6.8E+02 0.015 26.6 24.4 38 52-95 152-189 (472)
281 TIGR00769 AAA ADP/ATP carrier 29.2 7.2E+02 0.016 26.4 20.5 50 356-405 137-190 (472)
282 KOG4332 Predicted sugar transp 27.8 58 0.0013 32.1 3.1 90 22-117 337-426 (454)
283 PF02487 CLN3: CLN3 protein; 26.4 7.5E+02 0.016 25.7 20.7 62 343-404 334-395 (402)
284 KOG2927 Membrane component of 25.8 1.5E+02 0.0033 30.0 5.6 40 362-404 199-238 (372)
285 COG0477 ProP Permeases of the 25.4 3.5E+02 0.0076 24.7 8.3 60 344-403 94-155 (338)
286 COG3202 ATP/ADP translocase [E 25.1 8.8E+02 0.019 26.1 17.3 54 352-405 152-209 (509)
287 PF01733 Nucleoside_tran: Nucl 24.8 24 0.00053 35.0 0.0 82 352-451 5-86 (309)
288 PF13000 Acatn: Acetyl-coenzym 23.8 7.5E+02 0.016 26.7 10.6 61 347-407 408-469 (544)
289 PF12273 RCR: Chitin synthesis 22.1 44 0.00096 28.6 1.1 25 430-454 4-28 (130)
290 PF12606 RELT: Tumour necrosis 21.7 1.3E+02 0.0028 21.4 3.1 19 442-460 17-35 (50)
291 PF01770 Folate_carrier: Reduc 21.1 9.6E+02 0.021 25.0 15.2 61 343-404 93-153 (412)
292 KOG0253 Synaptic vesicle trans 20.0 9.3E+02 0.02 25.3 10.0 84 28-119 165-249 (528)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-69 Score=575.71 Aligned_cols=436 Identities=43% Similarity=0.727 Sum_probs=388.2
Q ss_pred CCCCCCccccccCCCCccCccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHH
Q 011824 6 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 85 (476)
Q Consensus 6 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~ 85 (476)
+.|..| .-......|..++..+...||.+|.++++|+|+.|||+.++++||||+.+++++..+.++|||||+.+|+|++
T Consensus 130 l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l 208 (571)
T KOG1237|consen 130 LLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGAL 208 (571)
T ss_pred cCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHH
Confidence 345555 1122345799999999999999999999999999999999999999988888878889999999999999999
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccC
Q 011824 86 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVP 165 (476)
Q Consensus 86 i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~ 165 (476)
++.++..|+|++.||.++|.+++++|++++++|+.|++.|++++|.++|++.+.+|+++++++++...+.++.. + +..
T Consensus 209 ~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~-~~~ 286 (571)
T KOG1237|consen 209 LAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L-YYD 286 (571)
T ss_pred HHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c-ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988776654332 1 111
Q ss_pred CCCccccCCcccccCCchhhhhHhhhhhcccc---CCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHH
Q 011824 166 GKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 242 (476)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~ 242 (476)
........++++++++|+|+.+...+. ...+||++|++++|||+|.++|++|+|...++||+++.|+.|.++
T Consensus 287 -----~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v 361 (571)
T KOG1237|consen 287 -----CTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFV 361 (571)
T ss_pred -----ccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhhee
Confidence 111123445778999999987654321 124789999999999999999999999999999999999999999
Q ss_pred HHhhhccccccC-eeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 011824 243 QQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 321 (476)
Q Consensus 243 ~qa~~m~~~~~g-~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~ 321 (476)
.|+.+||+++++ +++|+++++.+..+.+++++|+++++.+|+.||.+++++++++++||++|+++..++|.+++++|.+
T Consensus 362 ~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~k 441 (571)
T KOG1237|consen 362 LQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAK 441 (571)
T ss_pred hhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHH
Confidence 999999999987 9999999999999999999999999999999999988778999999999999999999999999999
Q ss_pred hhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 322 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 322 ~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
|++.+.++. ..+++ +|++||+|||+++|+||+|.+++++||+|+|||++|||+.+++|+++.|+|++++..+++
T Consensus 442 rl~~~~~~~-----~~~~~-mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~ 515 (571)
T KOG1237|consen 442 RLKTAVSLL-----VETNP-MSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVS 515 (571)
T ss_pred Hhhhhhhcc-----CCCCC-eeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998775411 11456 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCccc-ccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 011824 402 IIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQK 459 (476)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~-~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~ 459 (476)
++...++ + .++|++ +|+|++|+|+|||+++.+..++.+.|++++++|++++.++
T Consensus 516 ~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 516 LVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 9987663 1 347999 9999999999999999999999999999999999987765
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-53 Score=429.25 Aligned_cols=366 Identities=17% Similarity=0.220 Sum_probs=288.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.....++++|++|++|+|++|||+++++||||+++||| ||.+|++||+++|+|++++|++++++++++||+.+|++
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45778999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccceeecC--CCCChhhH------HHHHHHHHHHh--hccccCCcccccccccCCCCccccCCcc
Q 011824 107 LAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR------VAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGK 176 (476)
Q Consensus 107 ~~~~~~i~~i~f~~~~~~~~~~~--p~~~pl~~------~~~v~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (476)
++++|.+++++|++++|++...+ |+.+|++. ...+++..++. ... ..
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l~------------- 247 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL----------LN------------- 247 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH----------HH-------------
Confidence 99999999999999999988763 44444422 11111111110 000 00
Q ss_pred cccCCchhhh-h----HhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccc
Q 011824 177 IAHTDDFRCL-D----KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNT 250 (476)
Q Consensus 177 ~~~~~~~~~l-~----~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~ 250 (476)
.+.+++. . ...+.+... ...| ...+ +|+||+++++++++..++||++|+|++|+++.|+. +.|+
T Consensus 248 ---~~~~~~~~~~~~i~~~~~~~~~---~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~ 317 (498)
T COG3104 248 ---QNTFSGVLLVISILIAIIYFAE---AFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR 317 (498)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH---Hhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 0000000 0 001101100 0111 1223 89999999999999999999999999999999998 6788
Q ss_pred cccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 011824 251 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHG 330 (476)
Q Consensus 251 ~~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g 330 (476)
++.|+++||+|+|++||++|+++.|+++++|+|+.++. ++ |+++.|+++|+++++++++.......... .+
T Consensus 318 ~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~~-- 388 (498)
T COG3104 318 QIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFG---GP-- 388 (498)
T ss_pred cccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhc---CC--
Confidence 87789999999999999999999999999999988774 33 89999999999999999998876654311 10
Q ss_pred CcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCC
Q 011824 331 YEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 410 (476)
Q Consensus 331 ~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~ 410 (476)
... +|++|++++|+++++||+|++|+|+|+++++||++++|.+||+|+++.+.|+.+++.+...... +
T Consensus 389 -------~~~-~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~--- 456 (498)
T COG3104 389 -------SGL-VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T--- 456 (498)
T ss_pred -------CCC-cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c---
Confidence 224 8999999999999999999999999999999999999999999999999999999988763110 0
Q ss_pred CCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011824 411 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 458 (476)
Q Consensus 411 ~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~ 458 (476)
++ ..+......+|+.++.++++..+++...+++.++.-++
T Consensus 457 ---~~-----~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~ 496 (498)
T COG3104 457 ---DP-----AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG 496 (498)
T ss_pred ---ch-----hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence 00 11112234589999999999999999999888765443
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=1.6e-45 Score=397.74 Aligned_cols=362 Identities=24% Similarity=0.387 Sum_probs=302.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------ch
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-------GW 100 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-------g~ 100 (476)
+...+++||+++++|+|++|||++++++|||+++++ ++++++|+||||++|+|+++++++++++++++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 456688999999999999999999999999987543 35899999999999999999999999998554 69
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccC
Q 011824 101 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180 (476)
Q Consensus 101 ~~~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (476)
+++|++++++|++++++|+.++|+|++++|.++++.++.+++..+++++...... .
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------------~ 216 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------------H 216 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------------c
Confidence 9999999999999999999999999988899999988888888887764321110 0
Q ss_pred CchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCC
Q 011824 181 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT 260 (476)
Q Consensus 181 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~ 260 (476)
...+|+|++.... .++++||+|++++++++++..++||..|+|+.+++++|+.+||++++++.+|++
T Consensus 217 ~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~ 283 (654)
T TIGR00926 217 WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPD 283 (654)
T ss_pred cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHH
Confidence 1136777765432 245789999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh---------------
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY--------------- 325 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~--------------- 325 (476)
+++++|++.++++.|+++..++|.++|++.+ +++++|+++|++++++++++++++|.++.+.
T Consensus 284 ~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~ 360 (654)
T TIGR00926 284 QMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVL 360 (654)
T ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEe
Confidence 9999999999999999999999998886544 7999999999999999999999999875400
Q ss_pred ---------------------------h-------------hh------------------c-------------C----
Q 011824 326 ---------------------------A-------------IS------------------H-------------G---- 330 (476)
Q Consensus 326 ---------------------------~-------------~~------------------~-------------g---- 330 (476)
. .. . +
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (654)
T TIGR00926 361 NTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYV 440 (654)
T ss_pred cCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEE
Confidence 0 00 0 0
Q ss_pred C------c-----------------------------c------------------------------------------
Q 011824 331 Y------E-----------------------------F------------------------------------------ 333 (476)
Q Consensus 331 ~------~-----------------------------~------------------------------------------ 333 (476)
+ . +
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (654)
T TIGR00926 441 LLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDN 520 (654)
T ss_pred EEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccc
Confidence 0 0 0
Q ss_pred ----------c--c-----------------------cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824 334 ----------S--F-----------------------LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378 (476)
Q Consensus 334 ----------~--~-----------------------~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k 378 (476)
. + ..+++ +|++||+|||+++++||++.+++++||.|++||++||
T Consensus 521 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mk 599 (654)
T TIGR00926 521 AKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNT-VSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMK 599 (654)
T ss_pred cccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCc-eeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHH
Confidence 0 0 01223 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011824 379 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 452 (476)
Q Consensus 379 g~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y 452 (476)
++.+++|.++.++|+.+...+... ...+ +....|.++|.++++..++|.++++.|
T Consensus 600 s~~~a~~~~~~~~g~~~~~~~~~~-~~~~------------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 600 SVLQALWLLTVAIGNLIVVVIAEF-ENFS------------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcCh------------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998877643 1111 122467889999999999999999776
No 4
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=6.4e-46 Score=380.29 Aligned_cols=340 Identities=31% Similarity=0.458 Sum_probs=240.1
Q ss_pred CccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 011824 24 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSA 103 (476)
Q Consensus 24 ~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~ 103 (476)
+++.+...+++||+++++|+|++|||++++++|||+++++ ++++++|+||||++|+|+++++++++|+++++||+++
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 3456788999999999999999999999999999998742 3499999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccceeec-CCCCChhhH-HHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCC
Q 011824 104 FGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLTR-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTD 181 (476)
Q Consensus 104 F~i~~~~~~i~~i~f~~~~~~~~~~-~p~~~pl~~-~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
|++++++|++++++|+.++++|++. +|+++++.+ ...++..+.+++....+..... +++..... . .... ..
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~-~~~~-~~ 177 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQY----S-ERSI-FG 177 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHH----C-CCCC-CC
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHH-HHHhhhhh----h-hhhh-hh
Confidence 9999999999999999999999998 788888888 4455555556555443311110 11100000 0 0000 00
Q ss_pred chhhhhHhhhhhccccCCCCCCc-cccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccC-eeecC
Q 011824 182 DFRCLDKAALELKEDVINPSPWK-LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPV 259 (476)
Q Consensus 182 ~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g-~~ip~ 259 (476)
.....+ +...+... ...|. .++++++|++|.+.+.++.+...++|+..+.|.++....|..++|+.+++ +++|+
T Consensus 178 ~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 253 (372)
T PF00854_consen 178 IIVFIR-AAVIFFPE---IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPP 253 (372)
T ss_dssp CCCHHH-HHHHHCCC---HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------S
T ss_pred hhhhcc-chhhhhhh---hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhcccccccccccccccc
Confidence 001111 11111100 01121 25678899999999999999999999999999999999999999999998 99999
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
++++++|++++++++|+++++++|+.++ ++ ++++++|+++|++++++++++++.+|.+|.....++|
T Consensus 254 ~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------- 320 (372)
T PF00854_consen 254 AWLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------- 320 (372)
T ss_dssp GGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------
T ss_pred chhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------
Confidence 9999999999999999999999999884 23 3899999999999999999999999987765443332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHH
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL 391 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~ 391 (476)
. ++.+|++|.|++++++|.++++++++.+++.+|+++++.|+|+|++..++
T Consensus 321 ~-~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 321 K-VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp T---THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred C-CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 2 66699999999999999999999999999999999999999999887654
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=2.1e-42 Score=362.34 Aligned_cols=381 Identities=13% Similarity=0.110 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 011824 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 109 (476)
Q Consensus 30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~ 109 (476)
..+++++.++++|+|+++||.+++++|+|+++|++ |+++|+++|+++|+|++++|++++++.+++||+.+|+++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 44677888999999999999999999999987755 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccceeecC-CCCChhhH--HHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824 110 AMGISNMLFFIGTPLYRHRL-PGGSPLTR--VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 186 (476)
Q Consensus 110 ~~~i~~i~f~~~~~~~~~~~-p~~~pl~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (476)
+|++++++++.++|.+.+.. .+.+|.++ ........+.--..-.+..... ..+.... . .+ .-..
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~---~~-----~~~~ 243 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITV-LFWKEWS----V---YA-----LIVA 243 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----H---HH-----HHHH
Confidence 99999999999988876531 11223211 0000000000000000000000 0000000 0 00 0000
Q ss_pred hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCeeecCCcccch
Q 011824 187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVF 265 (476)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~~ip~~~~~~i 265 (476)
-.....+-.... ..+ ...+|+||+..++++++..++||+.|+|++++++++++ ++|++++||++|++|+|++
T Consensus 244 ~~~~~~~~~~~~-~~~------~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qsl 316 (493)
T PRK15462 244 TIIGLGVLAKIY-RKA------ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSI 316 (493)
T ss_pred HHHHHHHHHHHH-Hhc------CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhH
Confidence 000000000000 001 13478999999999999999999999999999999998 7999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHH
Q 011824 266 PGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAY 345 (476)
Q Consensus 266 n~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~ 345 (476)
||++|+++.|++.++|.++.+|. + +|+.+.|+++|++++++||++..+.... ..+ ... +|++
T Consensus 317 Np~~ii~l~P~~a~lw~~l~~~~-~---~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~---------~~~-~s~~ 378 (493)
T PRK15462 317 NAFAVMLCGVFLAWVVKESVAGN-R---TVRIWGKFALGLGLMSAGFCILTLSARW----SAM---------YGH-SSLP 378 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCC-cCHH
Confidence 99999999999999998875542 2 3899999999999999999998776542 111 124 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcC
Q 011824 346 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAG-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 424 (476)
Q Consensus 346 wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~-a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~ 424 (476)
|++..|+++|+||++++|.|++++++.||++++|++||+|++.. ++|+.+++.+.++....+. ++.-...+ +.
T Consensus 379 wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~-~~ 452 (493)
T PRK15462 379 LMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF-----DASGAINY-SI 452 (493)
T ss_pred HHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----Cccccccc-hh
Confidence 99999999999999999999999999999999999999999955 8999999999887642110 00000000 01
Q ss_pred chhHHHHHHHHHHHHHH--HHHHHHhhccccccccc
Q 011824 425 GRFDYLYWLLAVLSVIN--FCAFLYSAYRYKYRSEQ 458 (476)
Q Consensus 425 ~~~~~~f~lla~l~~~~--~~~~~~~~~~y~~~~~~ 458 (476)
.....+|..++.++++. .+++....+..|.|||.
T Consensus 453 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
T PRK15462 453 NAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA 488 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 12345677777666544 56677777778888875
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=2.5e-37 Score=327.17 Aligned_cols=371 Identities=9% Similarity=0.127 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 011824 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 109 (476)
Q Consensus 30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~ 109 (476)
..++++++++++|+|++|||..++++|+|+++++| |+++|+++|+++|+|+++|+.+++++.+++||+++|+++++
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 34678999999999999999999999999886643 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccceeec--CCCCChhhHHHHHHH---------HHHHhhccccCCcccccccccCCCCccccCCcccc
Q 011824 110 AMGISNMLFFIGTPLYRHR--LPGGSPLTRVAQVLV---------AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA 178 (476)
Q Consensus 110 ~~~i~~i~f~~~~~~~~~~--~p~~~pl~~~~~v~~---------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (476)
++.++++.++.+++.+++. +|++++... .+.+. ..+.. ...... ..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~-~~~~~~-~~-------------------- 238 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKPMSF-SKLLLVLLGSVVMIFVCAW-LMHNVE-VA-------------------- 238 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccchhh-hhHHHHHHHHHHHHHHHHH-HHhhhh-HH--------------------
Confidence 9999999999988877653 233333211 11100 00000 000000 00
Q ss_pred cCCchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCeee
Q 011824 179 HTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKL 257 (476)
Q Consensus 179 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~~i 257 (476)
. -.+.........- --++..+. +..++++.+..+++++..++||..|+|+.+++++|+. ++|++..|+.+
T Consensus 239 -~---~~~~~~~~i~~~~----f~~~~~~~-~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i 309 (489)
T PRK10207 239 -N---LVLIVLSIVVTII----FFREAFKL-DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI 309 (489)
T ss_pred -H---HHHHHHHHHHHHH----HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE
Confidence 0 0000000000000 00000111 2355777788888888999999999999999999987 68888889999
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccC
Q 011824 258 PVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT 337 (476)
Q Consensus 258 p~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~ 337 (476)
|++++|++|++.++++.|+.++++.++.+| .. ++++++|+++|+++++++++++++.+... ...
T Consensus 310 ~~~~~~~~n~~~iii~~pl~~~l~~rl~~r-~~---~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~--------- 373 (489)
T PRK10207 310 NPVSFQALNPFWVVVASPILAGIYTHLGSK-GK---DLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA--------- 373 (489)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhhC-CC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC---------
Confidence 999999999999999999999877666444 23 38999999999999999998876654311 000
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCc
Q 011824 338 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNW 417 (476)
Q Consensus 338 ~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~ 417 (476)
... +|+||+++.|+++|+||.+++|++++++++.+|++++|.+||+|+++.++|+.+|+.+.+.+.. +. ...|| .
T Consensus 374 ~~~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~-~~--~~~~~-~ 448 (489)
T PRK10207 374 QGL-TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV-PD--NITDP-L 448 (489)
T ss_pred CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--ccccc-h
Confidence 113 7899999999999999999999999999999999999999999999999999999999887642 11 00011 0
Q ss_pred ccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccCC
Q 011824 418 LAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHG 461 (476)
Q Consensus 418 ~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~~ 461 (476)
. .+..+..+|..+++.+++..++++++.+++++.-++|++
T Consensus 449 ---~-~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 488 (489)
T PRK10207 449 ---E-TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPES 488 (489)
T ss_pred ---h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 0 012346789999999999999999999999887555543
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=7.1e-37 Score=323.02 Aligned_cols=361 Identities=14% Similarity=0.130 Sum_probs=269.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...+++++.++++|.|+++|+..++++|++++++++ +|+++|+++|+++|+|+++|+.+++++.+++||+++|.++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3556788899999999999999999999999876532 2788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccceeecCCCCChhhHH-----H--HHH----HHHHHhhccccCCcccccccccCCCCccccCCcc
Q 011824 108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRV-----A--QVL----VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK 176 (476)
Q Consensus 108 ~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~-----~--~v~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (476)
++.+++++++++..++.+++.++++++..+. . ..+ ....+.. ...... +. . ..
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~---------~-~~ 241 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCA-WLMHHV-----VI---------A-NI 241 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHH-HHHhcc-----HH---------H-HH
Confidence 9999999999999888886554433332110 0 000 0001100 000000 00 0 00
Q ss_pred cccCCchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCe
Q 011824 177 IAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKL 255 (476)
Q Consensus 177 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~ 255 (476)
+ ..-...+...+..... ..| +.++ +++++..+++++++..++||+.|+|+.+++.+|+. ++|++++++
T Consensus 242 ~-----~~~~~~~~~~~~~~~~-~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~ 310 (475)
T TIGR00924 242 L-----LMTVTLAVIIFFFRLA-FKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGM 310 (475)
T ss_pred H-----HHHHHHHHHHHHHHHH-Hhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccce
Confidence 0 0000001111100000 011 1122 44555677899999999999999999999988775 799999999
Q ss_pred eecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc
Q 011824 256 KLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSF 335 (476)
Q Consensus 256 ~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~ 335 (476)
++|+++++++|++++++++|+++++|.++.+| .+ ++++..|+++|+++.+++++.+++.... +.+
T Consensus 311 ~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~-~~---~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~------- 375 (475)
T TIGR00924 311 SVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK-GK---DPTTPLKFTLGMLFCGASFLTFAASIWF----ADA------- 375 (475)
T ss_pred EECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CC---CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC-------
Confidence 99999999999999999999999887776554 23 3788999999999999999998876331 111
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCC
Q 011824 336 LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQP 415 (476)
Q Consensus 336 ~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~ 415 (476)
+.+ +|+||++++|+++|+||++++|+++++++++||+++||.++|+|.+..++|+.+++.+........
T Consensus 376 --~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~-------- 444 (475)
T TIGR00924 376 --GGL-TSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ-------- 444 (475)
T ss_pred --CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 224 899999999999999999999999999999999999999999999999999999999987643211
Q ss_pred CcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824 416 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 454 (476)
Q Consensus 416 ~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~ 454 (476)
+| ..+|..+++++++.+++++...++.++
T Consensus 445 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 445 GV----------TGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred ch----------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12 347888899999999999888888775
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=1.8e-36 Score=321.81 Aligned_cols=369 Identities=12% Similarity=0.167 Sum_probs=273.2
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~ 108 (476)
...+++++.++++|.|+++|+..++++|+|+++++| ++++++++|+++|+|+++||.+++++.+++||+++|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 456778889999999999999999999999876543 6779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccceeec--CCCCChhhHH------HHHHHHH-HHhhccccCCcccccccccCCCCccccCCccccc
Q 011824 109 IAMGISNMLFFIGTPLYRHR--LPGGSPLTRV------AQVLVAA-FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH 179 (476)
Q Consensus 109 ~~~~i~~i~f~~~~~~~~~~--~p~~~pl~~~------~~v~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (476)
+.++++++.++..++.++++ +|+++|.... ..+.... ........+. ..
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------- 245 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE-----IA----------------- 245 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch-----HH-----------------
Confidence 99999999888887776654 2333332211 1111111 0110000000 00
Q ss_pred CCchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCeeec
Q 011824 180 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLP 258 (476)
Q Consensus 180 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~~ip 258 (476)
.....+........... .. +. .+.+|+++.+..+++++..++||+.|.|+.+.++.|+. ++|+++.|+.+|
T Consensus 246 ~~~~~~~~~~~~~~~~~----~~---~~-~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~ 317 (500)
T PRK09584 246 RMALGVVALGIVVIFGK----EA---FA-MKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVE 317 (500)
T ss_pred HHHHHHHHHHHHHHHHH----HH---hh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEEC
Confidence 00000000000000000 00 11 12356777778888999999999999999999999987 588888899999
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCC
Q 011824 259 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 338 (476)
Q Consensus 259 ~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (476)
+++++++|++.++++.|+++++|.++.+| +++.+|+++|+++.++++++.++.+.. .++ .
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~---------~ 377 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND---------A 377 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC---------C
Confidence 99999999999999999999987666444 568899999999999999998776542 111 2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824 339 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 418 (476)
Q Consensus 339 ~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 418 (476)
.. +|++|++++|+++|+||++++|++++++++++|+++||++||+|+++.++|+.+++.+.+.+.. +. ...++
T Consensus 378 ~~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~~--~~~~~--- 450 (500)
T PRK09584 378 GI-VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV-PD--NVTDP--- 450 (500)
T ss_pred Cc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--ccccc---
Confidence 24 8899999999999999999999999999999999999999999999999999999999875431 10 00011
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccC
Q 011824 419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 460 (476)
Q Consensus 419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~ 460 (476)
....+.+..+|..+++++++..+++++++++.++..++|+
T Consensus 451 --~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~ 490 (500)
T PRK09584 451 --LMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDS 490 (500)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0011124568888999888888999999999988755554
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.35 E-value=7.4e-10 Score=114.99 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...+++...+.+++.|...|...+.+.|.+++++ +.++..+++...++|..+|+.+.+++.+..||++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 44556666677788888888888888888886532 677888999999999999999999998888999999988
Q ss_pred HHHHHHHHHHH
Q 011824 108 AIAMGISNMLF 118 (476)
Q Consensus 108 ~~~~~i~~i~f 118 (476)
++..+++.+..
T Consensus 183 ~~~~~~~~~~~ 193 (417)
T PRK10489 183 AAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHH
Confidence 87766655443
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.30 E-value=8.5e-10 Score=114.24 Aligned_cols=261 Identities=12% Similarity=0.105 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+.+.++++..+.+++.|.+.|...+.+.|.+++++ |.+++++++...++|..+|+.+.+++. +.||+..|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 45677888888899999999999999998887532 788999999999999999999999998 78999999988
Q ss_pred HHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhhh
Q 011824 108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD 187 (476)
Q Consensus 108 ~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (476)
++..++..+......+. .++ ++. . . .. .+ .+.
T Consensus 171 ~~~~~~~~i~~~~~~~~---~~~--~~~------------------~---~-----------------~~--~~--~~~- 202 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPA---YKL--STV------------------R---T-----------------PV--RE--GMT- 202 (400)
T ss_pred HHHHHHHHHHHHHhCCc---ccc--ccc------------------c---h-----------------hh--HH--HHH-
Confidence 87766554443322111 000 000 0 0 00 00 000
Q ss_pred HhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCCcccchhh
Q 011824 188 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPG 267 (476)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~~~~~in~ 267 (476)
. -.++. +... +.+....++..+.|....+..... + .++...-.+++..++.
T Consensus 203 ---~------------------~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~p~~~~--~--~~~~~~~~g~l~~~~~ 253 (400)
T PRK11646 203 ---R------------------VLRDK-RFVT---YVLTLTGYYMLAVQVMLMLPIMVN--D--IAGSPSAVKWMYAIEA 253 (400)
T ss_pred ---H------------------HHcCc-hHHH---HHHHHHHHHHHHHHHHHhhhhhHH--h--hcCCchHHHHHHHHHH
Confidence 0 00111 1111 111112233333332211111111 1 1100000112233333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHH
Q 011824 268 LSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL 347 (476)
Q Consensus 268 ~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wl 347 (476)
+..+....... +...|+ .+..+++.+|+++.+++++..+..+ +.++.
T Consensus 254 ~~~~~~~~~~~----~~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~ 300 (400)
T PRK11646 254 CLSLTLLYPIA----RWSEKR------FRLEHRLMAGLLIMSLSMFPIGMVS-----------------------NLQQL 300 (400)
T ss_pred HHHHHHHHHHH----HHHHHh------cchhHHHHHHHHHHHHHHHHHHHhh-----------------------hHHHH
Confidence 33222222222 222221 2233456777777776655443221 12333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824 348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 405 (476)
Q Consensus 348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~ 405 (476)
+...++.++++.+..|.....+.+.+|++.+|..+|++.+..++|..+|+.+.+.+..
T Consensus 301 ~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 301 FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 4445778999999999999999999999999999999999999999999888877654
No 11
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.26 E-value=3e-09 Score=107.67 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.|...|...+++.|.++++ +|.+++.++..+.++|.++++.+.+++.++.+|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5677888889999999999999999999998753 2788999999999999999999999988899999999988
Q ss_pred HHHHHHHHHHHH
Q 011824 108 AIAMGISNMLFF 119 (476)
Q Consensus 108 ~~~~~i~~i~f~ 119 (476)
++..++..+..+
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 877665554443
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=99.25 E-value=4.2e-09 Score=108.36 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=71.7
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+...++++..+.+++.|.+-|...+++.|.+++++ |.++++++..+.++|..+++.+.+.+.+++||++.|.+
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 356677888888999999988999999999987533 67889999999999999999999999888999999999
Q ss_pred HHHHHHHHHHH
Q 011824 107 LAIAMGISNML 117 (476)
Q Consensus 107 ~~~~~~i~~i~ 117 (476)
.++..++..+.
T Consensus 169 ~~~~~~l~~~~ 179 (390)
T PRK03545 169 IGGGALITLLL 179 (390)
T ss_pred HHHHHHHHHHH
Confidence 88766555443
No 13
>PRK10054 putative transporter; Provisional
Probab=99.23 E-value=1.6e-09 Score=111.90 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~ 108 (476)
...++++..+.+.+.+.+.|...+...|.+++++ |.++++++|...|+|..+++.+.+++.+ .||+..|.+.+
T Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 3344455556666777778888888888886532 7789999999999999999999999874 79999999988
Q ss_pred HHHHHHHHHH
Q 011824 109 IAMGISNMLF 118 (476)
Q Consensus 109 ~~~~i~~i~f 118 (476)
+..+++++..
T Consensus 169 ~~~~i~~i~~ 178 (395)
T PRK10054 169 ICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHH
Confidence 8777765443
No 14
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.21 E-value=1.8e-08 Score=104.12 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.+++.+...+...+.+.|.+++++ +.+...+.+...++|..++|.+.+++.++.||+..|.+.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 45567777788889998888888899999987532 556777888888899999999999998889999999988
Q ss_pred HHHHHHHHHHH
Q 011824 108 AIAMGISNMLF 118 (476)
Q Consensus 108 ~~~~~i~~i~f 118 (476)
++..+++.+..
T Consensus 174 ~~~~~~~~~~~ 184 (406)
T PRK15402 174 AALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHH
Confidence 87776665543
No 15
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.20 E-value=1e-08 Score=105.25 Aligned_cols=279 Identities=11% Similarity=0.076 Sum_probs=161.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+.+.++++.++.+.+.+..-|...++..+ +.+ ++...+.+.....++|..+++.+.+++.+++||+..|.+
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~~-------~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQK-------QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HHH-------HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 356677777777788888777877776543 221 256678899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824 107 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 186 (476)
Q Consensus 107 ~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (476)
.++..++.++.+.. ++ ..+|+++ .. .. + . ....++.
T Consensus 164 ~~~~~~~~~~~~~~-~~---~~~~~~~--------------------~~-~~--------~--------~---~~~~~~~ 199 (382)
T TIGR00902 164 LTAGLAFMLIGFLI-KP---TIPPKDA--------------------IP-ED--------E--------S---QGDSAFI 199 (382)
T ss_pred HHHHHHHHHHHHHc-CC---CCCCCcc--------------------cc-cc--------c--------c---ccchhHH
Confidence 76553333332221 11 0011100 00 00 0 0 0000000
Q ss_pred hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCCcc---c
Q 011824 187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM---P 263 (476)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~~~---~ 263 (476)
+. .++ |+ +..+.+...+++..+.+..+....+..+ . +.++.+. .
T Consensus 200 ~~----------------------l~~-~~---~~~~l~~~~l~~~~~~~~~~~~~~~l~~--~-----g~s~~~~g~l~ 246 (382)
T TIGR00902 200 AL----------------------LKN-PM---NLRFLAAVCLIQGAHAAYYGFSAIYWQA--A-----GISASATGLLW 246 (382)
T ss_pred HH----------------------HcC-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----CCCHhHHHHHH
Confidence 00 011 12 2222333344445555555443332221 1 2233322 2
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824 264 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 343 (476)
Q Consensus 264 ~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s 343 (476)
.++.+..++..++ ..++.+| .++.+-+.+|.++.++.++..+.. .+
T Consensus 247 ~~~~~~~i~~~~~----~~~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~-----------------------~~ 292 (382)
T TIGR00902 247 GIGVLAEIIIFAF----SNKLFQN-------CSARDLLLISAIACVGRWAIIGAI-----------------------EA 292 (382)
T ss_pred HHHHHHHHHHHHH----hHHHHhh-------CCHHHHHHHHHHHHHHHHHHHHhH-----------------------hh
Confidence 2333333333333 3333444 344455677888877777655432 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccC
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 422 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l 422 (476)
.++++..-+++++.+.+..+..+.++.+. |++.++..+|++. ...++|..+++.+.+.+....
T Consensus 293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~--------------- 356 (382)
T TIGR00902 293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL--------------- 356 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 44455556999999999999999999998 9999999999975 567788888887777654211
Q ss_pred cCchhHHHHHHHHHHHHHHHHH
Q 011824 423 NTGRFDYLYWLLAVLSVINFCA 444 (476)
Q Consensus 423 n~~~~~~~f~lla~l~~~~~~~ 444 (476)
+ ...|++.+++++++.++
T Consensus 357 --g--~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 --G--AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred --c--HHHHHHHHHHHHHHHHH
Confidence 0 13577778877765443
No 16
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.20 E-value=5.7e-09 Score=107.47 Aligned_cols=84 Identities=11% Similarity=0.016 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+.+.++++..+.+++.+. -|...+...|++++++ |.....++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 456677777777887654 4777778888876422 677888999999999999999999998889999999988
Q ss_pred HHHHHHHHHHH
Q 011824 108 AIAMGISNMLF 118 (476)
Q Consensus 108 ~~~~~i~~i~f 118 (476)
++..++..+..
T Consensus 179 ~~~~~~~~~~~ 189 (408)
T PRK09874 179 ASVLFLCFLVT 189 (408)
T ss_pred HHHHHHHHHHH
Confidence 88766655544
No 17
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.18 E-value=6.7e-09 Score=104.48 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+.+.++++..+.+++.|...|...+++.|.++++ +|.+.++++..+.++|.++++.+.+++.+..||+..|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6677888899999999999999999999999764 2788999999999999999999999998889999999988
Q ss_pred HHHHHHHHHHHH
Q 011824 108 AIAMGISNMLFF 119 (476)
Q Consensus 108 ~~~~~i~~i~f~ 119 (476)
++..+++.+..+
T Consensus 165 ~~~~~~~~~~~~ 176 (365)
T TIGR00900 165 AVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHH
Confidence 877666554443
No 18
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.18 E-value=1.7e-08 Score=104.07 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+...+.++..+.++|.|...|...+.+.|.+++++ |..+.++++.+.++|.++++.+...+.+..+|+..|.+
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 356677788888999999999999999999997532 78889999999999999999999888888999999998
Q ss_pred HHHHHHHHHHH
Q 011824 107 LAIAMGISNML 117 (476)
Q Consensus 107 ~~~~~~i~~i~ 117 (476)
.++..++..+.
T Consensus 175 ~~~~~~~~~~~ 185 (406)
T PRK11551 175 GGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHH
Confidence 87765554433
No 19
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.15 E-value=5.9e-08 Score=99.94 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~ 108 (476)
...++++..+.++|.|...|+..+...|.+++++ |.++..++..+.++|..+++.+.+++.+..||+..|.+++
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 185 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM 185 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4466777788999999999999999999987543 6678888899999999999999999988899999888766
Q ss_pred HHHH
Q 011824 109 IAMG 112 (476)
Q Consensus 109 ~~~~ 112 (476)
+..+
T Consensus 186 ~~~~ 189 (399)
T PRK05122 186 LLAL 189 (399)
T ss_pred HHHH
Confidence 5543
No 20
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.15 E-value=1.5e-08 Score=101.02 Aligned_cols=260 Identities=20% Similarity=0.256 Sum_probs=172.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.+++.|...+...++..|.+++++ |...+++++.+.++|..+++.+.+.+.++.+|+..|.+.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 56678888889999999999999999999998633 788999999999999999999999999989999999998
Q ss_pred HHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhhh
Q 011824 108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD 187 (476)
Q Consensus 108 ~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (476)
++..+++.+.....+ +......
T Consensus 160 ~~~~~~~~~~~~~~~-------------~~~~~~~--------------------------------------------- 181 (352)
T cd06174 160 AILGLLLALLLLFLL-------------RLLLLLA--------------------------------------------- 181 (352)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHH---------------------------------------------
Confidence 888777666554321 0000000
Q ss_pred HhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHH---hhhhhhHHHHhhhccccccCeeecCCcccc
Q 011824 188 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL---TEFLTLSVQQAYTMNTHMGKLKLPVTCMPV 264 (476)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~---~Q~~s~~~~qa~~m~~~~~g~~ip~~~~~~ 264 (476)
+....++..+ .+....+..+..+.+. ...+.+..
T Consensus 182 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 218 (352)
T cd06174 182 -------------------------------------LAFFLLSFGYYGLLTYLPLYLQEVLGLSA------AEAGLLLS 218 (352)
T ss_pred -------------------------------------HHHHHHHhHHHHHHHHHHHHHHHhcCCCH------HHHHHHHH
Confidence 0000000000 0000111000001110 11233445
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824 265 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 343 (476)
Q Consensus 265 in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~-ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s 343 (476)
...+..++..++..++. +|.++ .+ -+.++.++.+++++..... .+
T Consensus 219 ~~~~~~~i~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~i~~~~~~~~-----------------------~~ 264 (352)
T cd06174 219 LFGLGGILGALLGGLLS----DRLGR-------RRLLLLIGLLLAALGLLLLALA-----------------------PS 264 (352)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHh-------hhHHHHHHHHHHHHHHHHHHHh-----------------------cc
Confidence 55566666666655543 33221 11 4667777777776655432 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCc
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 423 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln 423 (476)
.++.+...++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+.+...... +|
T Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~--------~~------ 330 (352)
T cd06174 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG--------GY------ 330 (352)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------Cc------
Confidence 4556778899999999999999999999999999999999999999999999999887654211 12
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 011824 424 TGRFDYLYWLLAVLSVINFCAFL 446 (476)
Q Consensus 424 ~~~~~~~f~lla~l~~~~~~~~~ 446 (476)
...|.+.+++.++..+++.
T Consensus 331 ----~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 331 ----GGVFLILAALALLAALLLL 349 (352)
T ss_pred ----chHHHHHHHHHHHHHHHhe
Confidence 2356666777766665543
No 21
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.14 E-value=2.5e-08 Score=102.38 Aligned_cols=82 Identities=7% Similarity=0.036 Sum_probs=63.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+.+.+++...+.+++.+...|...+...|..++ +...+.+.....++|..+||.+++++.+++||+..|.+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~--------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQ--------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhh--------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3466667777778888999999888877765211 44566777888899999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 011824 107 LAIAMGISNM 116 (476)
Q Consensus 107 ~~~~~~i~~i 116 (476)
.++..++.++
T Consensus 164 ~~~~~~~~~~ 173 (382)
T PRK11128 164 LTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHH
Confidence 7765554433
No 22
>PRK10504 putative transporter; Provisional
Probab=99.13 E-value=6.9e-08 Score=101.81 Aligned_cols=87 Identities=15% Similarity=0.081 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.|..-|...+.+.|.++++ ++..++.++....++|..+++.+.+++.++.||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 4666788889999999999999999999988642 2677888999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 011824 108 AIAMGISNMLFFI 120 (476)
Q Consensus 108 ~~~~~i~~i~f~~ 120 (476)
.....++.+....
T Consensus 171 ~~~~~l~~~~~~~ 183 (471)
T PRK10504 171 IPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 7665555554443
No 23
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.10 E-value=3e-08 Score=104.50 Aligned_cols=85 Identities=12% Similarity=0.231 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-g~~~~F~i 106 (476)
....+++..++.++|.|..-|.......+.+++++ |..+..+++.+.++|.++++.+++++.+.. ||+..|.+
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 34567778888999999999999999999997533 788999999999999999999999998884 99999999
Q ss_pred HHHHHHHHHHHH
Q 011824 107 LAIAMGISNMLF 118 (476)
Q Consensus 107 ~~~~~~i~~i~f 118 (476)
.++..++..+.+
T Consensus 204 ~~~~~~~~~~~~ 215 (465)
T TIGR00894 204 FGIVGCAWSLLW 215 (465)
T ss_pred hhHHHHHHHHHH
Confidence 887655544433
No 24
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.09 E-value=1.7e-08 Score=105.20 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHhhccchhHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGSAF 104 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~---~~l~~~~g~~~~F 104 (476)
+.+.++++..+.++|.|..-+...++++|.+++++ |..+..+++.+.++|.++++.+. ..+.+..||++.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 34578889999999999999999999999998643 67888999999999999999998 6666778999999
Q ss_pred HHHHHHHHHHHHHH
Q 011824 105 GALAIAMGISNMLF 118 (476)
Q Consensus 105 ~i~~~~~~i~~i~f 118 (476)
.+.++..++.++..
T Consensus 200 ~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 200 GLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99776655554443
No 25
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.08 E-value=3.8e-08 Score=103.77 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hcc
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEH 98 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~ 98 (476)
.....++++..+.++|.|+.-|...++++|.+++++ |..+..++-.+..+|.++++.++..+. ++.
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 345667888899999999999999999999998643 677888888899999999887765443 357
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 011824 99 GWGSAFGALAIAMGISNML 117 (476)
Q Consensus 99 g~~~~F~i~~~~~~i~~i~ 117 (476)
||++.|.+.++..++.++.
T Consensus 192 gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 192 GWRYMFASEAIPALLFLML 210 (479)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 9999999887766655443
No 26
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.07 E-value=1.6e-08 Score=101.30 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+.+.++++..+.++|.|...|...+++.|.+++++ |...+++++.+.++|.++++.+.+++.++.||+..|.+.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 44478899999999999999999999999999844 788999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHH
Q 011824 108 AIAMGISNMLF 118 (476)
Q Consensus 108 ~~~~~i~~i~f 118 (476)
++..++..++.
T Consensus 158 ~~~~~~~~il~ 168 (352)
T PF07690_consen 158 AILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhhhhhhhH
Confidence 99888887643
No 27
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.07 E-value=1.4e-07 Score=100.93 Aligned_cols=266 Identities=17% Similarity=0.140 Sum_probs=157.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+.+.+++..+++++|..++.|.-++++.+..++++ ..++.++.-...|+.-++||.++|.+-...|-...|++
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 467778888889999999999999999999998644 67788899999999999999999998878899999999
Q ss_pred HHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824 107 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 186 (476)
Q Consensus 107 ~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (476)
.+++.+++++.+..-++.. +++..|-++..+-++
T Consensus 175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~------------------------------------------- 208 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPP---PPSSLPRERFFSALR------------------------------------------- 208 (524)
T ss_pred HHHHHHHHHHHHHHccccc---cccccchhhhhhhHH-------------------------------------------
Confidence 9998887765554332211 111111011000000
Q ss_pred hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hccccccCeeecCCcccch
Q 011824 187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVF 265 (476)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~g~~ip~~~~~~i 265 (476)
+..+| +..-+.+...+. ...++.....-....+...+. .++. .+..+..+
T Consensus 209 --~G~ry-----------------v~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl~a~~~l~~-------~a~~yGll 259 (524)
T PF05977_consen 209 --EGLRY-----------------VRSSPPLRSVLL---RSFLFNLFASAVWALLPLFARDVLGG-------GASGYGLL 259 (524)
T ss_pred --HHHHH-----------------HhcchHHHHHHH---HHHHHHHhhhHHHHhhhHHHHHHhCC-------cHHHHHHH
Confidence 00001 001111111111 111121111111111222222 1221 12222222
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHH
Q 011824 266 PGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAY 345 (476)
Q Consensus 266 n~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~ 345 (476)
.. ..-..-+...++.+..+++ .+..+-+..+.++.+++++..++. -+.+
T Consensus 260 ~a--~~gvGai~Gal~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~-----------------------~~~~ 308 (524)
T PF05977_consen 260 LA--AFGVGAILGALLLPRLRRR------LSSRRLVLLASLLFALALLLLALS-----------------------PSFW 308 (524)
T ss_pred HH--HHHHHHHHHHHHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcc-----------------------hHHH
Confidence 21 1122233344444444442 233344566777666666555432 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 346 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 346 wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
..++..++.|++-..........+-+.+|++++|..++++......+..+|..+.+.+.
T Consensus 309 ~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 309 LALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999988776666666666655443
No 28
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.07 E-value=1.5e-08 Score=106.80 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=63.4
Q ss_pred hHHHHHHH-HHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 29 MLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 29 ~~~~~~gL-~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
...++++. .+.++|.|..-+...+...+.+++ +|..+..+.+.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 34444433 456788887555555677777731 1678889999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHh
Q 011824 108 AIAMGISNMLFFI 120 (476)
Q Consensus 108 ~~~~~i~~i~f~~ 120 (476)
++..++..+..++
T Consensus 180 ~~~~~~~~v~~~~ 192 (455)
T TIGR00892 180 GGLLLHCCVCGAL 192 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766554443
No 29
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.05 E-value=1e-07 Score=97.08 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.+...+...+++.|.+++++ |...+.+++...++|..+++.+.+++.++.||+..|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 45667788888999999999999999999987532 778899999999999999999999999889999999988
Q ss_pred HHHHHHHHHHHHh
Q 011824 108 AIAMGISNMLFFI 120 (476)
Q Consensus 108 ~~~~~i~~i~f~~ 120 (476)
++..++..+..+.
T Consensus 166 ~~~~~~~~~~~~~ 178 (385)
T TIGR00710 166 SLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 8776666555443
No 30
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.04 E-value=3.8e-08 Score=115.22 Aligned_cols=288 Identities=11% Similarity=-0.002 Sum_probs=158.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+.+.++++.++.++|.+++.|...+++.|.+++++ +..+.+++.++.++|.++|+.+++++.+..||+..|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 467788999999999999999999999999998743 77899999999999999999999999988999999844
Q ss_pred HHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824 107 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 186 (476)
Q Consensus 107 ~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (476)
.++..++++++.+. ++..+++..... . + . +..
T Consensus 180 ~~~~~~~~~~~~~~----~~~~~~~~~~~~---------------------~------~--------------~---~~~ 211 (1140)
T PRK06814 180 LMGIAVLGWLASLF----IPKTGNAAPDLK---------------------I------D--------------R---NII 211 (1140)
T ss_pred HHHHHHHHHHHHhh----CCCCCCCCCCCe---------------------e------c--------------c---chH
Confidence 44443333332221 111111100000 0 0 0 000
Q ss_pred hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhh-ccccccCeeecCCcccch
Q 011824 187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVF 265 (476)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~-m~~~~~g~~ip~~~~~~i 265 (476)
..... . ....++--.+..+.+...+++.++....+.+..+... ...+ ..-.+++.+.
T Consensus 212 ~~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~----~~~~g~~~~~ 269 (1140)
T PRK06814 212 RSTIT----------L--------LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD----ENVATLFLAV 269 (1140)
T ss_pred HHHHH----------H--------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc----hHHHHHHHHH
Confidence 00000 0 0000000011112222222333322222222222211 1111 0011234455
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHH
Q 011824 266 PGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAY 345 (476)
Q Consensus 266 n~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~ 345 (476)
..+..++...+..++ .++. ...+.+.+|.++.+++.+..++...... ........-. ..... .+.+
T Consensus 270 ~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~-~~~~ 335 (1140)
T PRK06814 270 FSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFASSSVP-AEPAQLKSIL-VFLSK-RHGW 335 (1140)
T ss_pred HHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhcccccc-cccccccchh-hhhcc-cccH
Confidence 555555555555443 2221 1122344555555544443332100000 0000000000 00001 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 346 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 346 wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
++++..++.|++..+..+.....+.+.+|++.+|.++|++.+...+|..+++.+.+.+.
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677889999999999999999999999999999999999999999998888877654
No 31
>PRK12382 putative transporter; Provisional
Probab=99.02 E-value=2e-07 Score=95.86 Aligned_cols=77 Identities=10% Similarity=0.162 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.+...|...+.+.|.+++++ |.++++++..+.++|..+++.+.+++.+.+||+..+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 56677888889999999988888888888887533 677888999999999999999999998889998877665
Q ss_pred HHH
Q 011824 108 AIA 110 (476)
Q Consensus 108 ~~~ 110 (476)
.+.
T Consensus 185 ~~~ 187 (392)
T PRK12382 185 MVL 187 (392)
T ss_pred HHH
Confidence 443
No 32
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.00 E-value=4e-07 Score=97.01 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFG 105 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~-~~g~~~~F~ 105 (476)
.+...+++...+.+++.+...+...++..|.+++++ |.++..+.-.+.++|.++++.+..++.+ ..||+..|.
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 456677777778888999999999999999988533 6777888889999999999999999987 469999999
Q ss_pred HHHHHHHHHHHH
Q 011824 106 ALAIAMGISNML 117 (476)
Q Consensus 106 i~~~~~~i~~i~ 117 (476)
+.++.+++..+.
T Consensus 179 i~a~l~ll~~l~ 190 (491)
T PRK11010 179 LMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHH
Confidence 988776665443
No 33
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.00 E-value=3e-07 Score=93.28 Aligned_cols=88 Identities=13% Similarity=0.221 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...+++...+.+.+.+..-|...++..+..+++. | .+.....+.+.+.++|..+++.+.+++.+..||+..|.+.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-R---EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-h---hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 34445555555666666677777777777654322 1 1222356778889999999999999998889999999998
Q ss_pred HHHHHHHHHHHH
Q 011824 108 AIAMGISNMLFF 119 (476)
Q Consensus 108 ~~~~~i~~i~f~ 119 (476)
++..++..+..+
T Consensus 162 ~~~~~~~~~~~~ 173 (375)
T TIGR00899 162 ALAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHHH
Confidence 887666655443
No 34
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.00 E-value=9.3e-08 Score=96.86 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--------
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-------- 99 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-------- 99 (476)
+...++....+.+++.+...+...+++.|.+++++ |..+..+...+.++|.++++.+.+++..+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 44445555556678888889999999999996532 6788899999999999999999998887778
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 011824 100 WGSAFGALAIAMGISNMLFF 119 (476)
Q Consensus 100 ~~~~F~i~~~~~~i~~i~f~ 119 (476)
|+..|.+.++..++++++.+
T Consensus 156 wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 99999999887776554433
No 35
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.97 E-value=4e-07 Score=94.11 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=71.7
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+.+.+++...+.+++.|...|...++..|.+++++ |..+..+++.+.|+|.++++.+.+++.+..||+..|.+
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 467788888899999999999999999999987532 67889999999999999999999999998999999998
Q ss_pred HHHHHHHHH
Q 011824 107 LAIAMGISN 115 (476)
Q Consensus 107 ~~~~~~i~~ 115 (476)
.++..++.+
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 876555443
No 36
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.97 E-value=2e-07 Score=96.97 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-------hccchh
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-------MEHGWG 101 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~-------~~~g~~ 101 (476)
...+++...+..++.+.+.....++..+..++. + +|.+...+.....++|++++..+.+.+. +..||+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~---~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--R---ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 344444455567777788888888888876542 2 2677888888899999888776655443 246899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011824 102 SAFGALAIAMGISNMLF 118 (476)
Q Consensus 102 ~~F~i~~~~~~i~~i~f 118 (476)
..|.+.++..++..++.
T Consensus 174 ~~~~i~~~l~~~~~~~~ 190 (437)
T TIGR00792 174 MFALVLALIGVVSLIIC 190 (437)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888777666555443
No 37
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.96 E-value=1.2e-07 Score=100.04 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=73.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+...++++..+.++|.|...|...+++.|.++++ +|..++.+++.+.++|..+++.+.+++.+++||++.|.+
T Consensus 88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 35677888888999999999999999999999753 277889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 011824 107 LAIAMGISNMLFF 119 (476)
Q Consensus 107 ~~~~~~i~~i~f~ 119 (476)
.+...++.++...
T Consensus 162 ~~~~~~~~~~~~~ 174 (485)
T TIGR00711 162 NVPIGIIVVVVAF 174 (485)
T ss_pred hhHHHHHHHHHHH
Confidence 7766555544433
No 38
>TIGR00895 2A0115 benzoate transport.
Probab=98.95 E-value=3e-07 Score=93.65 Aligned_cols=84 Identities=20% Similarity=0.316 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.|...|...+++.|.+++++ |..+++++..+.++|..+++.+.+++.+..||+..|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 45677888889999999999999999999987532 778899999999999999999999999889999999988
Q ss_pred HHHHHHHHHH
Q 011824 108 AIAMGISNML 117 (476)
Q Consensus 108 ~~~~~i~~i~ 117 (476)
++..++..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6554444443
No 39
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.95 E-value=2.9e-08 Score=108.38 Aligned_cols=253 Identities=11% Similarity=-0.031 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-----
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS----- 102 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~----- 102 (476)
+.....++++.++++.++.+++.+++.++|.+..++ +++++.+++|||..+.+.+.+.+..........+..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 355667788889999999999999999999987652 666789999999999999865444444442223432
Q ss_pred --HHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccC
Q 011824 103 --AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 180 (476)
Q Consensus 103 --~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (476)
-++..++.+++.++.++.+...++..++.+.+...+.+++....+..+. +. ..
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~------------------------~~-~~ 212 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK------------------------RF-ST 212 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH------------------------hh-cc
Confidence 3347888888999999998777776666555444445554333221110 00 00
Q ss_pred CchhhhhHhhhhhccccCCCCCCccc--cccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeec
Q 011824 181 DDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 258 (476)
Q Consensus 181 ~~~~~l~~a~~~~~~~~~~~~~~~~~--~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip 258 (476)
...++ ...|..+ ...++++++...+++.++...+.+|+.+.|.....+.|+.++++..+.+...
T Consensus 213 ~~~~~--------------~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~ 278 (654)
T TIGR00926 213 RSEHW--------------PLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGF 278 (654)
T ss_pred CCccc--------------chhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCE
Confidence 00000 0122112 2333467899999999999999999999999999999999999887666667
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011824 259 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY 325 (476)
Q Consensus 259 ~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~ 325 (476)
+...+.++++-.++++|+...+-+|+..+..++ -.+++++.-+.+.++++.+..++.+..+...
T Consensus 279 ~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 279 EIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred ecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999998654 5788999999999999999999998865543
No 40
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.94 E-value=6.4e-07 Score=92.37 Aligned_cols=72 Identities=13% Similarity=0.241 Sum_probs=50.5
Q ss_pred cCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 011824 44 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 119 (476)
Q Consensus 44 G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~ 119 (476)
+...|...++..|..++++ | ....+.++...+.++|.++++.+.+++.++.||+..|++.++..++..+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 120 STANPQMFALAREHADKTG-R---EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HhhHHHHHHHHHHHhhhcc-c---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3456666676666554322 1 0122335888899999999999999999889999999988876555544433
No 41
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.94 E-value=2e-07 Score=99.30 Aligned_cols=88 Identities=17% Similarity=0.061 Sum_probs=73.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+...++++..+.++|.|++.|...+.+.+.+.+++ +|.+++.++..+.++|..+||.+.+++.++.||++.|++
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 467788889999999999999988888888875422 378899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 011824 107 LAIAMGISNMLFF 119 (476)
Q Consensus 107 ~~~~~~i~~i~f~ 119 (476)
.....++.+++.+
T Consensus 167 ~~~~~~~~~~l~~ 179 (495)
T PRK14995 167 NVPIVLVVMGLTA 179 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 7766555544433
No 42
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.93 E-value=8.3e-07 Score=90.41 Aligned_cols=85 Identities=20% Similarity=0.356 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.+++.+...+...++..|.+++++ |.+.+++++...++|..+++.+.+++.+..||+..|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 45567777888899999999999999999987533 778899999999999999999999999889999999988
Q ss_pred HHHHHHHHHHH
Q 011824 108 AIAMGISNMLF 118 (476)
Q Consensus 108 ~~~~~i~~i~f 118 (476)
++..++..+..
T Consensus 152 ~~~~~~~~~~~ 162 (377)
T PRK11102 152 ALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHH
Confidence 77766655444
No 43
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.92 E-value=6.1e-07 Score=93.90 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...+++...+.+++.|..-|...+.+.+++++++ |..+..+++.+.++|..+++.+.+++.+++||++.|.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44555666667788888888999999999997532 788999999999999999999999999899999999988
Q ss_pred HHHHHHH
Q 011824 108 AIAMGIS 114 (476)
Q Consensus 108 ~~~~~i~ 114 (476)
++..++.
T Consensus 184 ~i~~~~~ 190 (434)
T PRK11663 184 GIIAIVV 190 (434)
T ss_pred HHHHHHH
Confidence 7755443
No 44
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.91 E-value=5.9e-07 Score=93.27 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=67.5
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+...++++..+.++|.|..-+...+++.|.+++++ |..+.+++..+.++|.++++.+.+++.+.+||+..|++
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 356778888889999999999999999999987532 67788899999999999999999999888999999998
Q ss_pred HHHHH
Q 011824 107 LAIAM 111 (476)
Q Consensus 107 ~~~~~ 111 (476)
+++..
T Consensus 178 ~~~~~ 182 (426)
T PRK12307 178 GLLPV 182 (426)
T ss_pred HHHHH
Confidence 65443
No 45
>TIGR00898 2A0119 cation transport protein.
Probab=98.89 E-value=1.5e-06 Score=92.46 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++.++.++|.|+..+...+++.|.+++++ |..+..++..+..+|.++++.++..+.+ |+..|.+.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 56678888889999999999999999999998643 5667777888889999999988776653 99999988
Q ss_pred HHHHHHHHHHH
Q 011824 108 AIAMGISNMLF 118 (476)
Q Consensus 108 ~~~~~i~~i~f 118 (476)
++..++..+..
T Consensus 250 ~i~~~~~~~~~ 260 (505)
T TIGR00898 250 SLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHH
Confidence 87766555444
No 46
>PRK09848 glucuronide transporter; Provisional
Probab=98.87 E-value=7.9e-07 Score=93.35 Aligned_cols=88 Identities=8% Similarity=0.032 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011824 297 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 376 (476)
Q Consensus 297 ~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~ 376 (476)
..+-+.+|+++.+++.+...+.. . .+.++.+...++.++|+.+..+...+...+.+|++
T Consensus 293 ~~~~~~~g~~~~~i~~~~~~~~~--------------------~-~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~ 351 (448)
T PRK09848 293 KKNTFLIGALLGTCGYLLFFWVS--------------------V-WSLPVALVALAIASIGQGVTMTVMWALEADTVEYG 351 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC--------------------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34456778777777665443210 1 34455556678899999999999999999988865
Q ss_pred -------hHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824 377 -------MKSIGSAYAALAGGLGCFAASILNSIIKS 405 (476)
Q Consensus 377 -------~kg~~~gl~~l~~a~g~~l~~~l~~~~~~ 405 (476)
.+|.++|++.+..-+|..+|+.+.+.+-.
T Consensus 352 ~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 352 EYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999998888766543
No 47
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.85 E-value=1.5e-06 Score=91.65 Aligned_cols=302 Identities=12% Similarity=0.039 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--hhc----------
Q 011824 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--QME---------- 97 (476)
Q Consensus 30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l--~~~---------- 97 (476)
..+.+++.+.-++.....+...++++|..++++.| ++.++.|+.+..|+|+++|+.+.++. .+.
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 45566666777788888888999999999975522 46799999999999999999988765 221
Q ss_pred ---cchhHHHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCC
Q 011824 98 ---HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 174 (476)
Q Consensus 98 ---~g~~~~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (476)
.+++..|.++++.++++.++-.+.-|..+..+++.. ++ . .++..+++
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~--------------------~~--~--~~~~~~~~------ 240 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF--------------------IN--S--EAAPPSKH------ 240 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc--------------------hh--h--hccccccc------
Confidence 167889999999888887776654333221000000 00 0 00000000
Q ss_pred cccccCCchhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhh-hcccccc
Q 011824 175 GKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMG 253 (476)
Q Consensus 175 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~-~m~~~~~ 253 (476)
.. . ..+ ++.+. .-++--|.+.+++.+-++..+-|..+-+..|.++-+.. +-+.+-.
T Consensus 241 -~~--~---~~~---~~i~~--------------~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~ 297 (477)
T TIGR01301 241 -GE--E---AFF---GELFG--------------AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQG 297 (477)
T ss_pred -ch--h---hhH---HHHHH--------------HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcch
Confidence 00 0 000 00000 00111234455666666666667777677777754432 1111000
Q ss_pred -Ceeec---CCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHhhh--h-
Q 011824 254 -KLKLP---VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV-GIGLAVSILSVIWAGIFERYRRN--Y- 325 (476)
Q Consensus 254 -g~~ip---~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki-~iG~~l~~ls~~~~~~~~~~~~~--~- 325 (476)
.++-- ..+-..+|.+... ++..++.++.|+.+ ..++. .++.++.++++....++.....+ .
T Consensus 298 ~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~ 366 (477)
T TIGR01301 298 AKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTYVAKNSRYY 366 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 00000 1122233333333 33334444455532 12234 68888888888887766531100 0
Q ss_pred hhhcCCcccccCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 326 AISHGYEFSFLTAMPDLS-AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD--AMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 326 ~~~~g~~~~~~~~~~~~s-~~wlip~~~l~~igEll~~p~~lef~~~~aP~--~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
...++.. .++.. .++.+..+.+.|++-......=++.+.+..|+ +-.|.+||+.+++..+...+..+..+.
T Consensus 367 ~~~~~~~------~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 367 DGDGESL------PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred ccccccc------CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 0000110 01022 35566778999999999999999999999995 455999999999999999998877766
Q ss_pred hhh
Q 011824 403 IKS 405 (476)
Q Consensus 403 ~~~ 405 (476)
+..
T Consensus 441 ~~~ 443 (477)
T TIGR01301 441 WDQ 443 (477)
T ss_pred HHH
Confidence 543
No 48
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.85 E-value=4e-07 Score=91.82 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.|...+...+...+.+++ + |..+..++..+.++|.++++.+.+.+.+..||+..|.+.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 566777788888999988777777777777753 1 567888999999999988766667776778999999998
Q ss_pred HHHHHHHHHHHH
Q 011824 108 AIAMGISNMLFF 119 (476)
Q Consensus 108 ~~~~~i~~i~f~ 119 (476)
++..++..+..+
T Consensus 163 ~~~~~~~~~~~~ 174 (377)
T TIGR00890 163 GIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHHHHHHH
Confidence 877666554443
No 49
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.85 E-value=2.7e-06 Score=87.46 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.+++.|...+...+++.|.+++++ |.+++++++...++|..+++.+.+++.+..||+..|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 44566777778889999888888999999887532 778889999999999999999999888889999999988
Q ss_pred HHHHHHHHHHH
Q 011824 108 AIAMGISNMLF 118 (476)
Q Consensus 108 ~~~~~i~~i~f 118 (476)
++..++..+..
T Consensus 164 ~~~~~i~~~~~ 174 (392)
T PRK10473 164 AAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHH
Confidence 77666555443
No 50
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.83 E-value=1.5e-06 Score=101.76 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 97 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~ 97 (476)
+...++++.++.+++.|.+-|...++++|.+++++ |..+++++..+.++|.++|+.+++++.+.
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888889999999999999999999998643 78899999999999999999999998765
No 51
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.82 E-value=2.1e-06 Score=88.09 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 104 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F 104 (476)
.+...++++..+.++|.|.+.|...+...+..+++ +|.+.+++++.+.|+|..+|+.+.+++.+...+...+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 35677788888999999998888877777776643 2678899999999999999999999987654333333
No 52
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.81 E-value=4e-06 Score=88.17 Aligned_cols=83 Identities=11% Similarity=0.207 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa-~i~~~l~~~l~~~~g~~~~F~i 106 (476)
+...+++...+.+++.|...|.......+++++++ |..+.++++.+.++|. ++++++...+....||+..|.+
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 45566777788899999998988888999887532 6778899999999986 4566554344344599999999
Q ss_pred HHHHHHHHHH
Q 011824 107 LAIAMGISNM 116 (476)
Q Consensus 107 ~~~~~~i~~i 116 (476)
.++..++..+
T Consensus 193 ~~~~~~~~~~ 202 (452)
T PRK11273 193 PAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHH
Confidence 8776555433
No 53
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.81 E-value=8.5e-06 Score=84.23 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-~g~~~~F~i 106 (476)
+...+++...+.++..+...|...++..|.+++++ |.++..+..++.++|.++++.+..++.+. .||+..|.+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 45555555556778888899999999999987543 67788888899999999999988888775 599999999
Q ss_pred HHHHHHHHHHH
Q 011824 107 LAIAMGISNML 117 (476)
Q Consensus 107 ~~~~~~i~~i~ 117 (476)
.++..++..+.
T Consensus 167 ~a~~~l~~~l~ 177 (402)
T PRK11902 167 MAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHH
Confidence 88876655443
No 54
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.81 E-value=3e-06 Score=93.98 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------- 97 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~---------- 97 (476)
+...++++.++.++|.|+.-|...+++++.++++ .|...+.+......+|.++++.++..+...
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 5677888899999999999999999999999753 266778888888889999888776555432
Q ss_pred ---cchhHHHHHHHHHHHHHHHHH
Q 011824 98 ---HGWGSAFGALAIAMGISNMLF 118 (476)
Q Consensus 98 ---~g~~~~F~i~~~~~~i~~i~f 118 (476)
.+|++.|++.++..++.++.+
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH
Confidence 368888888777665554443
No 55
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.81 E-value=3e-06 Score=87.50 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 011824 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 112 (476)
Q Consensus 33 ~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~ 112 (476)
++...+.++|.|++.|...+++.|.+++++ |.++..+.....++|.++||.+++++.+. .|...|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 456677899999999999999999998633 78899999999999999999999999764 47777777766554
Q ss_pred HHH
Q 011824 113 ISN 115 (476)
Q Consensus 113 i~~ 115 (476)
++.
T Consensus 165 ~~~ 167 (393)
T PRK11195 165 LAA 167 (393)
T ss_pred HHH
Confidence 443
No 56
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.80 E-value=5.8e-06 Score=85.01 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.|...+...++..|.+++++ +..+..++..+..+|.++++.+.+++.++.||+..|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 45667777888888888877877788888776422 566778888899999999999999998889999999987
Q ss_pred HHHHHHHHH
Q 011824 108 AIAMGISNM 116 (476)
Q Consensus 108 ~~~~~i~~i 116 (476)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 765554433
No 57
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.80 E-value=3.7e-06 Score=86.74 Aligned_cols=80 Identities=13% Similarity=0.216 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-g~~~~F~i 106 (476)
+...++++..+.++|.|..-+...+.+.+.+++ + |..+..++..+.++|..+++.+.+++.++. +|+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-R------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-c------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 566778889999999999999999999888852 2 567888888999999999999999988775 89988766
Q ss_pred HHHHHHHH
Q 011824 107 LAIAMGIS 114 (476)
Q Consensus 107 ~~~~~~i~ 114 (476)
-++..++.
T Consensus 169 ~~~~~~~~ 176 (393)
T PRK09705 169 WALPAVVA 176 (393)
T ss_pred HHHHHHHH
Confidence 54443333
No 58
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.78 E-value=1.3e-06 Score=88.62 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhH
Q 011824 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 102 (476)
Q Consensus 31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~g~~~ 102 (476)
.++++..+.++|.|...+...+++.|.+++++ |.....++..+.++|.++++.+.+.+. +..+|++
T Consensus 98 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~ 171 (394)
T TIGR00883 98 LLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI 171 (394)
T ss_pred HHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHH
Confidence 56777788899999999999999999987543 677888999999999999988876654 3578999
Q ss_pred HHHHHHHHHHHHHH
Q 011824 103 AFGALAIAMGISNM 116 (476)
Q Consensus 103 ~F~i~~~~~~i~~i 116 (476)
.|.+.++..+++..
T Consensus 172 ~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 172 PFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 99987776555443
No 59
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.76 E-value=5e-06 Score=85.26 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.|.. ++..+..++.++++ +|.++.+++..+.++|.++++++.+++.++.||+..|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5778888999999999875 55555568887742 2788999999999999999999999999999999999986
Q ss_pred HHHHHHHHH
Q 011824 108 AIAMGISNM 116 (476)
Q Consensus 108 ~~~~~i~~i 116 (476)
++.-++..+
T Consensus 151 ~~l~~~~~~ 159 (368)
T TIGR00903 151 AAVAAAGII 159 (368)
T ss_pred HHHHHHHHH
Confidence 665444433
No 60
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.76 E-value=7.4e-06 Score=85.21 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=69.2
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+...++++..+.++|.|..-+...+...|.+++++ +.+...++..+.++|..+|+.+++++.++.||++.|.+
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 356778888889999988766666677888887533 56778899999999999999999999888899999999
Q ss_pred HHHHHHHHHHH
Q 011824 107 LAIAMGISNML 117 (476)
Q Consensus 107 ~~~~~~i~~i~ 117 (476)
.++..+++++.
T Consensus 176 ~~~~~~i~~~~ 186 (413)
T PRK15403 176 IAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHH
Confidence 88776666544
No 61
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.75 E-value=1e-06 Score=91.58 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=82.5
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
+.+++.+...+..++..++ .+|.+ ..+.+.++.++.+++++..++.
T Consensus 267 ~~~~~~~~~~~~~~~~g~l----~dr~g-------~~~~~~~~~~l~~~~~~l~~~~----------------------- 312 (420)
T PRK09528 267 LNSFQVFLEALIMFFAPFI----INRIG-------AKNALLLAGTIMAVRIIGSGFA----------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhC-------cchhhHHHHHHHHHHHHHHHhc-----------------------
Confidence 3444444444555554444 44432 2223566666666665554322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl-~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 420 (476)
.++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+.+.+.... +|
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~--------G~--- 381 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI--------GF--- 381 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh--------Cc---
Confidence 2345666778888988888888888999999999999887654 55667778877777776554211 12
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHHH
Q 011824 421 NINTGRFDYLYWLLAVLSVINFCAFLY 447 (476)
Q Consensus 421 ~ln~~~~~~~f~lla~l~~~~~~~~~~ 447 (476)
...|.+.+++.++..++.+.
T Consensus 382 -------~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 382 -------QGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred -------hHHHHHHHHHHHHHHHHHHH
Confidence 23566666666655555443
No 62
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.74 E-value=1.3e-05 Score=85.24 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhH
Q 011824 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 102 (476)
Q Consensus 31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~g~~~ 102 (476)
.+.++.++.++|.|+.-|+..++++|.++++. |..+..+...+.++|..+|..+...+. .++||++
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 47788889999999999999999999998643 555677778888888888876654443 2589999
Q ss_pred HHHHHHHH
Q 011824 103 AFGALAIA 110 (476)
Q Consensus 103 ~F~i~~~~ 110 (476)
.|++.++.
T Consensus 194 ~f~i~~~~ 201 (490)
T PRK10642 194 PFFIALPL 201 (490)
T ss_pred HHHHHHHH
Confidence 99986654
No 63
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.74 E-value=5.1e-06 Score=85.25 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+.+.++++..+.+++.|...|...+...|.+++++ |.+.+.++..+.++|..+++.+.+++.+..||++.|.+
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 357778888889999999888888888888776522 56678888899999999999999999888999999999
Q ss_pred HHHHHHHHHH
Q 011824 107 LAIAMGISNM 116 (476)
Q Consensus 107 ~~~~~~i~~i 116 (476)
.++..++..+
T Consensus 163 ~~~~~~~~~~ 172 (382)
T PRK10091 163 IAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHH
Confidence 8876555444
No 64
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.74 E-value=1.5e-06 Score=92.09 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.+++.|+..+...+++.|.++++ +|..++.+++.+.++|.++++.+.+++.++.||+..|.+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 5667788888999999999999999999999753 2677888999999999999999999999899999999875
Q ss_pred HHHH
Q 011824 108 AIAM 111 (476)
Q Consensus 108 ~~~~ 111 (476)
++..
T Consensus 181 ~~~~ 184 (496)
T PRK03893 181 ILPI 184 (496)
T ss_pred HHHH
Confidence 5443
No 65
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.72 E-value=7.6e-07 Score=94.26 Aligned_cols=85 Identities=9% Similarity=0.043 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~ 108 (476)
.......+.+++++.+..+...-++..|+.+ ++++ ......++.|.+.++|.++|+.+++++.+.+||+..|.+.+
T Consensus 120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3344446788999999999999999999998 3322 24556779999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 011824 109 IAMGISNML 117 (476)
Q Consensus 109 ~~~~i~~i~ 117 (476)
+..++..+.
T Consensus 196 ~l~ll~~~~ 204 (468)
T TIGR00788 196 ALLLLQLFV 204 (468)
T ss_pred HHHHHHHHH
Confidence 877766443
No 66
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.72 E-value=1.3e-06 Score=88.05 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~-~l~~~l~~~~g~~~~F~i 106 (476)
+...++++..+.+++.|...|...+++.|.+++++ |..++.++..+.++|..+++ ++.+.+.+..+|+..|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 56677888888999999999999999999998633 67788899999999999999 577777778899999998
Q ss_pred HHHHHHHHHHHHH
Q 011824 107 LAIAMGISNMLFF 119 (476)
Q Consensus 107 ~~~~~~i~~i~f~ 119 (476)
.++..++..+..+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 8876655444443
No 67
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.70 E-value=1.5e-06 Score=91.60 Aligned_cols=303 Identities=17% Similarity=0.254 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHH
Q 011824 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAI 109 (476)
Q Consensus 31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-~g~~~~F~i~~~ 109 (476)
.+.+..++-+++.|...|++..+.+...++++ |..+..+.|.+..+|.+++..++|++-+. .||...|++.++
T Consensus 130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~ 203 (466)
T KOG2532|consen 130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGI 203 (466)
T ss_pred hhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHH
Confidence 55777888999999999999999999998754 78999999999999999999999999888 999999999887
Q ss_pred HHHHHHHHHHhhccceeecCCCCChhhH--HHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhhh
Q 011824 110 AMGISNMLFFIGTPLYRHRLPGGSPLTR--VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD 187 (476)
Q Consensus 110 ~~~i~~i~f~~~~~~~~~~~p~~~pl~~--~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (476)
.-++-.++++. .|. +.|+++|.-. ..+.+.
T Consensus 204 ~g~i~~~~w~~---~~~-d~P~~h~~is~~El~~I~-------------------------------------------- 235 (466)
T KOG2532|consen 204 VGLIWFILWFL---FYS-DSPSKHPNISEKELKYIE-------------------------------------------- 235 (466)
T ss_pred HHHHHHHHHHH---Hhc-CCcccCCCCCHHHHHHHH--------------------------------------------
Confidence 65555544443 222 2344333211 111000
Q ss_pred HhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHH-------HHhhhhhhHHHHhhhccccccCeeecCC
Q 011824 188 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNV-------ILTEFLTLSVQQAYTMNTHMGKLKLPVT 260 (476)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~-------~~~Q~~s~~~~qa~~m~~~~~g~~ip~~ 260 (476)
..+...........|| |++++-.++|+..+-.+. +..+++ ++..+..++|.+ ..+
T Consensus 236 ~~k~~~~~~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~P-tY~~~VL~f~v~------~~G 297 (466)
T KOG2532|consen 236 KGKSEAHVKKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLP-TYLKEVLGFDVR------ETG 297 (466)
T ss_pred hcccccccCCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhCCChh------hhh
Confidence 0000000000001354 233333344433222211 111111 121122222221 234
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCC
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVG--IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 338 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~--iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (476)
++.+++.+...+.-.+...+-..+.+| ... .+..+|+. +++...++++++.+... +
T Consensus 298 ~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------------~---- 355 (466)
T KOG2532|consen 298 FLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------D---- 355 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------C----
Confidence 566777777777777777776666555 322 34555664 34444444444433321 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCC
Q 011824 339 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYE--E-APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQP 415 (476)
Q Consensus 339 ~~~~s~~wlip~~~l~~igEll~~p~~lef~~~--~-aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~ 415 (476)
-+.+ . +.++++++..+..-...-+.-. . ||++. +..||+.....+++..+++.+++.+.+ .+ .-.
T Consensus 356 ---~~~~-~--a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a-~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~----t~~ 423 (466)
T KOG2532|consen 356 ---EHRL-L--AVILLTIAIGLSGFNISGFYKNHQDIAPQHA-GFVMGIINFVGALAGFIAPLLVGIIVT-DN----TRE 423 (466)
T ss_pred ---Ccch-H--HHHHHHHHHHHcccchhhhHhhhhhccchHH-HHHHHHHHHHHHHHHHHHHHheeeEeC-CC----CHH
Confidence 0111 1 2344455544444444444433 3 77665 799999999999999999999876542 10 012
Q ss_pred CcccccCcCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011824 416 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA 449 (476)
Q Consensus 416 ~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~ 449 (476)
+| ...|++.+++.++..++|.+..
T Consensus 424 eW----------~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 424 EW----------RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HH----------HHHHHHHHHHHHHhchheeEee
Confidence 35 3578889999999888888776
No 68
>PRK11043 putative transporter; Provisional
Probab=98.70 E-value=1e-05 Score=83.34 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.+...+...++..|.+++++ +.+.++......++|..+++.+.+++.+++||+..|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 45667777788888888888888888899887532 566778888889999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 011824 108 AIAMGISNMLF 118 (476)
Q Consensus 108 ~~~~~i~~i~f 118 (476)
++..++..+..
T Consensus 167 ~~~~~~~~~~~ 177 (401)
T PRK11043 167 FAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 77666554443
No 69
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.69 E-value=1.1e-05 Score=84.23 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCc
Q 011824 347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTG 425 (476)
Q Consensus 347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~-l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~ 425 (476)
++...++.++++.+..+....++.+.+|++.||..+|+.. ...++|..+|+.+.+.+....+ +++.+
T Consensus 311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g----~~~~~-------- 378 (418)
T TIGR00889 311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF----AYGTF-------- 378 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----cccCC--------
Confidence 4455788999999999999999999999999999999996 5678888888888775543221 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCcccc
Q 011824 426 RFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEV 466 (476)
Q Consensus 426 ~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 466 (476)
....-|.+.+++.++..++++++.+ +++++-+++|+++
T Consensus 379 ~~~~~f~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~ 416 (418)
T TIGR00889 379 DWQTMWLFFAGYIAILAVLFMIFFK---YSHNAIKVDDRDV 416 (418)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCccccc
Confidence 0123556666666666655555554 3456666666654
No 70
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.69 E-value=2.5e-06 Score=90.12 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSA 103 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~---g~~~~ 103 (476)
.+...+++...+.++|.|..-|...+.+++.+++++ |..++.++-.+.++|..+++.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 356777888888999999999999999999998754 667788888999999999998887776543 58888
Q ss_pred HHHHHHHHHHHH
Q 011824 104 FGALAIAMGISN 115 (476)
Q Consensus 104 F~i~~~~~~i~~ 115 (476)
|.+.++..++..
T Consensus 194 f~~~g~~~~~~~ 205 (467)
T PRK09556 194 FIFPSIIALIIG 205 (467)
T ss_pred HHHHHHHHHHHH
Confidence 888776554433
No 71
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.68 E-value=4e-06 Score=85.73 Aligned_cols=82 Identities=13% Similarity=0.254 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFG 105 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g--~~~~F~ 105 (476)
+...++++..+.++|.|...+...++..|.+++++ |..+..++..+.++|..+++.+.+.+.+..+ |+..|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 56667888889999999999999999999997633 6788999999999999999999998887766 999998
Q ss_pred HHHHHHHHHH
Q 011824 106 ALAIAMGISN 115 (476)
Q Consensus 106 i~~~~~~i~~ 115 (476)
+.++..++.+
T Consensus 173 ~~~~~~~~~~ 182 (405)
T TIGR00891 173 ISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHH
Confidence 8765554443
No 72
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.66 E-value=2.1e-05 Score=80.82 Aligned_cols=51 Identities=16% Similarity=-0.025 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 011824 69 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 119 (476)
Q Consensus 69 ~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~ 119 (476)
+..+-.++.++..+|.++|..+.+++.+++||+..|.+.++..++..+..+
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~ 181 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVL 181 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777999999999999999999999999998887776555543
No 73
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.65 E-value=7e-06 Score=87.07 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---------cc
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------EH 98 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~---------~~ 98 (476)
+...++++..+.++|.+..-+ ....+++.++++. |..+..+++...|+|+.+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 445666667778888876543 4456788886532 6778888888888888888776665532 25
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 011824 99 GWGSAFGALAIAMGISNMLF 118 (476)
Q Consensus 99 g~~~~F~i~~~~~~i~~i~f 118 (476)
||+..|.+.++..++..+..
T Consensus 196 gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 89999999887665544433
No 74
>PRK03699 putative transporter; Provisional
Probab=98.65 E-value=2.4e-05 Score=80.63 Aligned_cols=86 Identities=6% Similarity=0.102 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hccchhHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFG 105 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~-~~~g~~~~F~ 105 (476)
.+...++++..+.+++.|...+...+.+.+.+++++ |.......+...++|+.+++.+.+++. +..||+..|.
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 356677788888999999999999999999986532 566777778888999999998888764 4579999999
Q ss_pred HHHHHHHHHHHHH
Q 011824 106 ALAIAMGISNMLF 118 (476)
Q Consensus 106 i~~~~~~i~~i~f 118 (476)
+.++..++..+..
T Consensus 167 ~~~~~~~~~~~~~ 179 (394)
T PRK03699 167 CIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 8777665554433
No 75
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.7e-05 Score=80.92 Aligned_cols=89 Identities=13% Similarity=0.262 Sum_probs=77.3
Q ss_pred cchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 011824 26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 105 (476)
Q Consensus 26 ~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~ 105 (476)
..+...+.++.++.++..|.|-+...+..+|..++++ |.++..+-+.+..+.-.+|.-+..++++..||+..|.
T Consensus 98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 3578889999999999999999999999999998754 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011824 106 ALAIAMGISNMLFFI 120 (476)
Q Consensus 106 i~~~~~~i~~i~f~~ 120 (476)
+-++.-++.++..+.
T Consensus 172 ~ia~l~ll~~~~~~~ 186 (394)
T COG2814 172 AIAVLALLALLLLWK 186 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777665555554443
No 76
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.62 E-value=3.8e-05 Score=80.26 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccch
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGW 100 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~g~ 100 (476)
...+.+...+.++|.|+.-|...++++|.+++++ |..+.++.+.+.++|.++++.+...+. ..+||
T Consensus 124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 3467788889999999999999999999998643 566788889999999999887766554 25899
Q ss_pred hHHHHHHHHHHHH
Q 011824 101 GSAFGALAIAMGI 113 (476)
Q Consensus 101 ~~~F~i~~~~~~i 113 (476)
+..|.+.++..++
T Consensus 198 r~~F~i~~~~~ll 210 (432)
T PRK10406 198 RIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 9999987765443
No 77
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.60 E-value=9e-06 Score=84.88 Aligned_cols=306 Identities=12% Similarity=0.068 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh----hc---cchh
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME---HGWG 101 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~----~~---~g~~ 101 (476)
...+++...+..++...+.-+..+++.|..++.+. |.+..++.....++|.++...+.+.+- +. .+|.
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 34456666677899999999999999999876442 567777877888888876555555443 22 1677
Q ss_pred HHHHHHHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCC
Q 011824 102 SAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTD 181 (476)
Q Consensus 102 ~~F~i~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
..+.+.++..+++.++.....|. +.++++ + . + + ..
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~-~--------------------~----------~-~--------~~---- 212 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKE-RSVEVT-E--------------------Q----------E-K--------KI---- 212 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeee-cccccc-c--------------------c----------c-c--------cc----
Confidence 77777666666555555443332 000000 0 0 0 0 00
Q ss_pred chhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhh-ccccccCeeecCC
Q 011824 182 DFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVT 260 (476)
Q Consensus 182 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~-m~~~~~g~~ip~~ 260 (476)
++.+.. .+.++-..+..++....+.+....-..+....+... +..+ + -.+
T Consensus 213 --~~~~~~----------------------~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~-~~~ 263 (428)
T PF13347_consen 213 --SLRDSL----------------------RSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE----G-LIS 263 (428)
T ss_pred --ccccch----------------------hhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc----h-hhH
Confidence 000000 001111112233333444444443333333333332 2221 0 012
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
.+..+..+..++..|+..++ .+|.+++ +-+.+|.++.+++.+...+...
T Consensus 264 ~~~~~~~~~~~v~~~~~~~l----~~r~gk~-------~~~~~~~~~~~~~~~~~~~~~~-------------------- 312 (428)
T PF13347_consen 264 IFMLIFFVASIVGSPLWGRL----SKRFGKK-------KVYIIGLLLAALGFLLLFFLGP-------------------- 312 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHccce-------eehhhhHHHHHHHHHHHHHHHh--------------------
Confidence 23334445555556665444 4554322 2366777777777776655431
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCC
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG 413 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP-------~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~ 413 (476)
-+.+|.++..++.+++--...+...+...+..+ ++..|++.|++.+..-+|..+++.+...+-...+
T Consensus 313 -~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G----- 386 (428)
T PF13347_consen 313 -GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG----- 386 (428)
T ss_pred -hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC-----
Confidence 245777788899999998888888888887776 4567999999999999999998888776544332
Q ss_pred CCCcccc--cCcCchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011824 414 QPNWLAQ--NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 453 (476)
Q Consensus 414 ~~~~~~~--~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~ 453 (476)
+.++ ..++.-....-.+++.+.++..++-+++.++|+
T Consensus 387 ---y~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~ 425 (428)
T PF13347_consen 387 ---YDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYP 425 (428)
T ss_pred ---cCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1111 112222333444455555555555556666665
No 78
>PRK09669 putative symporter YagG; Provisional
Probab=98.60 E-value=1.6e-05 Score=83.48 Aligned_cols=63 Identities=8% Similarity=0.022 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 011824 345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 407 (476)
Q Consensus 345 ~wlip~~~l~~igEll~~p~~lef~~~~aP-------~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~ 407 (476)
++++...++.++++....+...+.+.+.++ ++..|...|++.+..-+|..+|+.+.+.+-...
T Consensus 320 ~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 320 WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334555688999999999999999988876 456778889988888788877777776554333
No 79
>PRK09952 shikimate transporter; Provisional
Probab=98.59 E-value=9.3e-05 Score=77.58 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchhH
Q 011824 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 102 (476)
Q Consensus 31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~--------~~~g~~~ 102 (476)
.+.+...+.++|.|+.-|....++.+.+++++ |....+....+.++|.+++..+..++. +++||+.
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 56777888999999999999999999888643 556667778888888888877666654 2579999
Q ss_pred HHHHHHHHHH
Q 011824 103 AFGALAIAMG 112 (476)
Q Consensus 103 ~F~i~~~~~~ 112 (476)
.|++.++..+
T Consensus 201 ~f~~~~~~~l 210 (438)
T PRK09952 201 PFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 80
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.58 E-value=2.6e-05 Score=81.60 Aligned_cols=85 Identities=13% Similarity=0.201 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-IQMEHGWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~-l~~~~g~~~~F~i 106 (476)
+...+++...+.+++.|..-|.....+.|.+++++ |..++++++.+.++|..+++.+.+. +..+.+|+.+|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34456677778889999988988899999887643 6789999999999999998877665 4445799999999
Q ss_pred HHHHHHHHHHHH
Q 011824 107 LAIAMGISNMLF 118 (476)
Q Consensus 107 ~~~~~~i~~i~f 118 (476)
.++..++..+..
T Consensus 191 ~~~~~~i~~~~~ 202 (438)
T TIGR00712 191 PAICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHHHH
Confidence 887766654443
No 81
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.58 E-value=1.6e-05 Score=84.30 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIKS 405 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP-------~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~ 405 (476)
.++++...++.++++....+...+++.+.+| ++..|.+.|++.+..-+|..+++.+.+.+-.
T Consensus 324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555678899999999999999998877 5557779999998888888887777765543
No 82
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.55 E-value=9.9e-05 Score=76.32 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa-~i~~~l~~~l~~~~g~~~~F~i 106 (476)
+...+++...+.++|.+..-+...+.+.+.+++++ |.++..++..+.++|. .+++.+.+++.+..||...++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 44555666666788877777777777777776532 7888889999999996 6789888888888886555544
Q ss_pred H
Q 011824 107 L 107 (476)
Q Consensus 107 ~ 107 (476)
.
T Consensus 178 ~ 178 (402)
T TIGR00897 178 A 178 (402)
T ss_pred H
Confidence 3
No 83
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.53 E-value=1.8e-05 Score=81.51 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHhHHHHHHHHHHHHHhh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl-~~l~~a~g~~l~~~l~~~~~ 404 (476)
+++|+++..++.+++.........++..+..|++.++...+. +.....+|+.+++.+.+.+.
T Consensus 306 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~ 368 (396)
T TIGR00882 306 TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMY 368 (396)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHH
Confidence 356667777888988877777788888888899998886655 55677777777777766544
No 84
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.52 E-value=9.3e-06 Score=82.50 Aligned_cols=89 Identities=15% Similarity=0.284 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHhhccchhHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFG 105 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~--~~l~~~~g~~~~F~ 105 (476)
+...+.+-.++-+.-+|.=-|.....++..|+.++ |.+..+++-.+-|+|+.+.+.++ +++..+++|+.+|+
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 66677777777888888888999999999998644 78888899999999999999999 99999999999999
Q ss_pred HHHHH-HHHHHHHHHhhc
Q 011824 106 ALAIA-MGISNMLFFIGT 122 (476)
Q Consensus 106 i~~~~-~~i~~i~f~~~~ 122 (476)
.|++. ++++++.+..+|
T Consensus 190 ~pgiiaiival~~~~~~r 207 (448)
T COG2271 190 FPGIIAIIVALILLFLLR 207 (448)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 99875 556666665543
No 85
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.50 E-value=4.2e-05 Score=77.45 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GWGSAFG 105 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~--g~~~~F~ 105 (476)
+...++++..+.++|.|...+...+...|.+++ + |.++.+++..+.++|..+++.+.+.+.++. +|+..|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 456677788888999998888888888877742 1 577888999999999999999988887664 3899988
Q ss_pred HHHHHHHHH
Q 011824 106 ALAIAMGIS 114 (476)
Q Consensus 106 i~~~~~~i~ 114 (476)
+.++..++.
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 766554443
No 86
>PRK15075 citrate-proton symporter; Provisional
Probab=98.50 E-value=4.7e-05 Score=79.58 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------hhccchhH
Q 011824 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGS 102 (476)
Q Consensus 31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l--------~~~~g~~~ 102 (476)
.+.++..+.++|.|..-|+..++.+|.+++++ |..+..++..+.++|..+++.+.+.+ .++.||+.
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 46777888999999999999999999998643 67778888888888877777766655 24689999
Q ss_pred HHHHHHH
Q 011824 103 AFGALAI 109 (476)
Q Consensus 103 ~F~i~~~ 109 (476)
.|.+..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987544
No 87
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.44 E-value=5.8e-07 Score=91.96 Aligned_cols=88 Identities=23% Similarity=0.367 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFG 105 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-~~~~F~ 105 (476)
.+.+.+.+...+.++|...+-|...++++|.|+++. |.+.|.||||+|++|+.+|.....++.+..+ |+++|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 578888999999999999999999999999999743 8999999999999999999999999987766 999999
Q ss_pred HHHHHHHHHHHHHHh
Q 011824 106 ALAIAMGISNMLFFI 120 (476)
Q Consensus 106 i~~~~~~i~~i~f~~ 120 (476)
..++.+++..++..+
T Consensus 193 ~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFL 207 (493)
T ss_pred eehHHHHHHHHHHHh
Confidence 988887766555443
No 88
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.40 E-value=0.00022 Score=71.35 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=68.8
Q ss_pred cchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 011824 26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 97 (476)
Q Consensus 26 ~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-------- 97 (476)
..+...+.+++.+++.|.+...+..++++++.-++++ +.+..|+--.+..+|++++|++.+.+..+
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~ 80 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ 80 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence 4578899999999999999999999999999987644 56677888888999999999999876521
Q ss_pred --------cchhHHHHHHHHHHHHHHHHH
Q 011824 98 --------HGWGSAFGALAIAMGISNMLF 118 (476)
Q Consensus 98 --------~g~~~~F~i~~~~~~i~~i~f 118 (476)
..|++.|++-++...+..+++
T Consensus 81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 81 VATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889985555444433333
No 89
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.36 E-value=0.00018 Score=74.72 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------ccch
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGW 100 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~------~~g~ 100 (476)
.+...++++..+.++|.|..-|...+...+.+++++ |.....++..+.++|..+++.+.+++.+ ..||
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw 167 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW 167 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence 346678888899999999999998888999998522 6778889999999999999999988853 3699
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 011824 101 GSAFGALAIAMGISNMLF 118 (476)
Q Consensus 101 ~~~F~i~~~~~~i~~i~f 118 (476)
++.|.+.++..++..++.
T Consensus 168 r~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 168 QWLFLLEGFPSVILGVMT 185 (412)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999777655444333
No 90
>PRK11462 putative transporter; Provisional
Probab=98.24 E-value=0.00058 Score=72.18 Aligned_cols=84 Identities=8% Similarity=0.097 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-------cchhH
Q 011824 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGS 102 (476)
Q Consensus 30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-------~g~~~ 102 (476)
..+++...+..++.-++.-.-.++.++.-++ ++| |.+..+++..+.++|.++++.+...+.+. .||..
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~ 184 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQ---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQG 184 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 3344444455677777777888888888765 333 77888899999999988887765443322 24666
Q ss_pred HHHHHHHHHHHHHHHH
Q 011824 103 AFGALAIAMGISNMLF 118 (476)
Q Consensus 103 ~F~i~~~~~~i~~i~f 118 (476)
...+.++..++...+.
T Consensus 185 ~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 185 GIAVLSVVAFMMLAFC 200 (460)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555444444333
No 91
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.00038 Score=73.85 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh------hccchh
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------MEHGWG 101 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~------~~~g~~ 101 (476)
+.+.+.+-..++++-.+..-|+....++..|++++ +..-+.+||.+.++|.++|.+++..+. ...||+
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~ 206 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR 206 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence 56667777889999999999999999999998754 667778999999999999999998863 357999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011824 102 SAFGALAIAMGISNMLF 118 (476)
Q Consensus 102 ~~F~i~~~~~~i~~i~f 118 (476)
+.|++.++.+++..++.
T Consensus 207 ~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 207 WLFIIEGVITLVLGIVV 223 (495)
T ss_pred eehhHHHHHHHHHHheE
Confidence 99999998776554433
No 92
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.20 E-value=0.0023 Score=65.31 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 405 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~ 405 (476)
.+-+.+..+++|+|--+.....+...-+.++++..|+.+|+|...++++..++..+.+....
T Consensus 301 ~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 301 PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999999999999999999999999999988777777666665443
No 93
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.20 E-value=0.0015 Score=69.60 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------------
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------ 96 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~------------ 96 (476)
...++++..+.++|.|+.-|....++.+.++++. |..+.++++.+.++|.++++.+...+..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 5678899999999999999999999999998743 7788889999999999998877765421
Q ss_pred -----------ccchhHHHHHHHHHHHHH
Q 011824 97 -----------EHGWGSAFGALAIAMGIS 114 (476)
Q Consensus 97 -----------~~g~~~~F~i~~~~~~i~ 114 (476)
..+|++.|.+.++..++.
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~ 217 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLA 217 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHH
Confidence 247999998777655443
No 94
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.11 E-value=0.00073 Score=70.31 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=65.3
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------- 96 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~---------- 96 (476)
.+...+.++..+.++|.|...+...+.+.+..++++ +.+..++.....++|+.+++.+.+.+..
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 356778889999999999999999999988765432 4556778888999999999999887732
Q ss_pred ----------------ccchhHHHHHHHHHHHHHHHH
Q 011824 97 ----------------EHGWGSAFGALAIAMGISNML 117 (476)
Q Consensus 97 ----------------~~g~~~~F~i~~~~~~i~~i~ 117 (476)
..+|+..|++.++..++..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246999998777755544333
No 95
>PRK10133 L-fucose transporter; Provisional
Probab=98.00 E-value=0.0026 Score=66.82 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=48.5
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 95 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~ 95 (476)
.+...+++++.+.++|.|...+...+++.|..++ +. +....+++.....+|..+|+.+.+.+.
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-~~-----~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-SS-----GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999976433 21 333466777788889999888776543
No 96
>PRK03545 putative arabinose transporter; Provisional
Probab=97.93 E-value=0.00036 Score=71.70 Aligned_cols=83 Identities=17% Similarity=0.047 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824 299 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378 (476)
Q Consensus 299 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k 378 (476)
+-+.++.++.+++.+..+.. .+.++++...+++|+++....|....++.+..|++.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r 131 (390)
T PRK03545 75 KLLIGLFVLFIASHVLSALA-----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK 131 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence 34667777777766554432 2355666677899999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 379 SIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 379 g~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+..+|++....++|..+++.+.....
T Consensus 132 ~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 132 AQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999988876643
No 97
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.89 E-value=0.00049 Score=72.14 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+.....+.+.+..+|....+-..-++..+.-++++.. +...-++.|.+.++|++++..+.|++.++.+++..|.+
T Consensus 84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 34445556667788888888888888888777554422 44555688999999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 011824 107 LAIAMGISNML 117 (476)
Q Consensus 107 ~~~~~~i~~i~ 117 (476)
+++...+.++.
T Consensus 160 ~~~~~~l~~~~ 170 (433)
T PF03092_consen 160 SAALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHHH
Confidence 87766555443
No 98
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.88 E-value=1.1e-05 Score=82.77 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=105.7
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
.+|..-.+.-+++.|++..+= .| .+..+-|++|.++-+++.+..++.
T Consensus 72 ll~~vf~v~~~i~sPl~gyLa----dr-------yNR~~v~~vG~~iW~~Av~~~~fs---------------------- 118 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLA----DR-------YNRKRVIAVGIFIWTLAVFASGFS---------------------- 118 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHH----hh-------cCcceEEeeHHHHHHHHHHHHHHH----------------------
Confidence 345444555556778877753 33 234446889999988887765443
Q ss_pred chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCccc
Q 011824 341 DLSAYWLL-IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA 419 (476)
Q Consensus 341 ~~s~~wli-p~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 419 (476)
+.+||+ ..-.++|+||.-.+|..-.++.+..|+..||.++|+++++.-+|+.+|...++.+...+. .|-
T Consensus 119 --~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~Wr- 188 (493)
T KOG1330|consen 119 --NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WWR- 188 (493)
T ss_pred --HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ceE-
Confidence 346766 467899999999999999999999999999999999999999999999888877665442 352
Q ss_pred ccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011824 420 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 455 (476)
Q Consensus 420 ~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~ 455 (476)
+-|++-++++++.+++.+++.+-=+|+
T Consensus 189 ---------~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 189 ---------WAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred ---------EEEEeehHHHHHHHHHHHhhccCcccc
Confidence 346677888887777766666544443
No 99
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.84 E-value=0.00046 Score=69.69 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------c
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------E 97 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~----------~ 97 (476)
+...++++..+.+++.+.+ +...+.++|.+++++ |....+++..+.|+|..+++.+.+.+.. +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5666777888888887766 456788899887533 6778888888888998888877766643 3
Q ss_pred cchhHHH-HHHHHHHH
Q 011824 98 HGWGSAF-GALAIAMG 112 (476)
Q Consensus 98 ~g~~~~F-~i~~~~~~ 112 (476)
.+|++.| .+.++...
T Consensus 163 ~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 163 LAWGWAFVIVPAGILL 178 (366)
T ss_pred ccccchhHHHHHHHHH
Confidence 4899999 44444433
No 100
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.82 E-value=0.0013 Score=67.85 Aligned_cols=109 Identities=14% Similarity=-0.008 Sum_probs=80.0
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
..+...+...+..|+...+. +|. ...+-+.+++++.+++.+..+..
T Consensus 60 ~~~~~~~~~~~~~~~~g~l~----Dr~-------grr~~~~~~~~~~~~~~~~~~~~----------------------- 105 (394)
T PRK10213 60 SVTVTAFVAMFASLFITQTI----QAT-------DRRYVVILFAVLLTLSCLLVSFA----------------------- 105 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh----ccc-------CcHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 33455666666666665543 442 22234567777777766554322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.|++.-...|.....+.+..|++.|+..+|++....++|..+++.+...+.
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235666677799999999999999999999999999999999999999999999988887654
No 101
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.81 E-value=0.00065 Score=67.81 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=92.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.+...+...+..|+...+..+..+| +-+.+|.++.+++.+...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~---------------------- 82 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRR-----------RVLIIGLLLFALGSLLLAFA---------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HH-----------HHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCe-----------eeEeehhhhhhhHHHHhhhh----------------------
Confidence 455555666667777766654443222 24667777777774443321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 420 (476)
.+.++++...++.|+++....+....++.+..|++.|+..+|++.....+|..+++.+...+.... +|
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~--------~~--- 150 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF--------GW--- 150 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC--------HH---
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc--------cc---
Confidence 112356778899999999999999999999999999999999999999999999999887654211 12
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHH
Q 011824 421 NINTGRFDYLYWLLAVLSVINFCA 444 (476)
Q Consensus 421 ~ln~~~~~~~f~lla~l~~~~~~~ 444 (476)
...|++.++++++..++
T Consensus 151 -------~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 151 -------RWAFLISAILSLIAAIL 167 (352)
T ss_dssp -------CCHHHHHHHHHHHHHHH
T ss_pred -------ccccccccchhhhhhhh
Confidence 12566677777766653
No 102
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.80 E-value=0.00091 Score=68.23 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=79.7
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.++..+...+..|+...+..+..|| +-+.++.++.+++.+..+..
T Consensus 51 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------- 97 (405)
T TIGR00891 51 SLISAALISRWFGALMFGLWGDRYGRR-----------LPMVTSIVLFSAGTLACGFA---------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHh----------------------
Confidence 455566666667777766665443222 23455666666555443322
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus 98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555667899999999999999999999999999999999999999999999998877654
No 103
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.77 E-value=0.00089 Score=67.96 Aligned_cols=110 Identities=15% Similarity=-0.047 Sum_probs=78.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.+...+...+..|+..++. +|.+ ..+-+.+|.++.+++.+..+..
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l~----d~~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 90 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPLS----DRYG-------RRPVLLLGLFIFALSSLGLALS---------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhHH----HhcC-------ChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 344555555556666655443 4422 1223556777766666554332
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556667899999999999999999999999999999999999999999988888877544
No 104
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.77 E-value=0.00056 Score=68.96 Aligned_cols=111 Identities=14% Similarity=-0.023 Sum_probs=81.1
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
+++.++..+..++..|+..++..+..+|+ -+.++.++.+++.+..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLLDRFGARK-----------TLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCcce-----------eeHHHHHHHHHHHHHHHHH---------------------
Confidence 34556666777777777666544433221 2445666655555444332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 80 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 80 --GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred --cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 234556677899999999999999999999999999999999999999999999998887543
No 105
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.77 E-value=0.0015 Score=65.33 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=81.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.++..+..++..|+..++..+..|| +-+.++.++.+++.......... ..
T Consensus 38 ~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 89 (365)
T TIGR00900 38 LAALAGMLPYVVLSPIAGALADRYDRK-----------KVMIGADLIRAVLVAVLPFVALL-----------------GG 89 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhchh-----------HHHHHHHHHHHHHHHHHHHHHHc-----------------CC
Confidence 455566666677777766654443222 12445555555555544443320 01
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.+++..+..|....++.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 90 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 90 -LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777899999999999999999999999999999999999999999999988877654
No 106
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.76 E-value=0.033 Score=59.18 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccC
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 408 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~ 408 (476)
-+|.+- ++.|+.--=..+..=++..++.|++..+...|+|.++.=..+.+|+++.+++...++
T Consensus 382 ~f~~~a--~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 382 EFWVLA--VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHH--HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344443 566676667788888999999999999999999999999999999999998876653
No 107
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.76 E-value=0.002 Score=66.28 Aligned_cols=109 Identities=13% Similarity=-0.006 Sum_probs=76.6
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.+...+..++..++..++..+..+| +-+.++.++.+++.+..+..
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------- 100 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRLADRIGRK-----------RILIVSVALFGLFSLATAQA---------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence 445555556666666655554333222 23555666555554433221
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
.+.++++...++.+++.-...|.....+.+..|++.|+..+|++.....+|..+++.+....
T Consensus 101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456667789999999999999999999999999999999999999999999988776543
No 108
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.76 E-value=0.019 Score=60.51 Aligned_cols=60 Identities=8% Similarity=-0.065 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 93 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~ 93 (476)
.+...+++.-++.++| |..-+.....+.+.|++++ +..+..++-...|+|..++.++.+.
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3567788888888898 5566888888999998643 6778888877888888777666654
No 109
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.71 E-value=0.002 Score=70.82 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---------
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--------- 98 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~--------- 98 (476)
....++++.++.++|.|..-+...+++.|.+++++ +..++.+++.+.++|..+|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 45678899999999999999999999999998644 678999999999999999999999887543
Q ss_pred -------------chhHHHHHHHHHHHHHHHHHH
Q 011824 99 -------------GWGSAFGALAIAMGISNMLFF 119 (476)
Q Consensus 99 -------------g~~~~F~i~~~~~~i~~i~f~ 119 (476)
+|+.+|++.++..++..+.++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999998877666555444
No 110
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.68 E-value=0.009 Score=61.78 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~-~l~~a~g~~l~~~l~~~~~ 404 (476)
.+++|+++.-.+.++---+.-...+-++++..|+++.++...+. .++.++|..+.+.+.+..+
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 45678888889999998899999999999999999998888775 4777788877666665443
No 111
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.68 E-value=0.0031 Score=65.57 Aligned_cols=109 Identities=15% Similarity=0.009 Sum_probs=78.5
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
..+...+...+..++..++. +|.+ +.+-+.+++++.+++.+..++.
T Consensus 48 ~~s~~~~~~~~~~~~~g~l~----dr~G-------~r~~~~~~~~~~~~~~~~~~~~----------------------- 93 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNIML----AIIG-------ARRWIAGIMVLWGIASTATMFA----------------------- 93 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHH----HHhC-------hHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 33444444455555555443 4432 1123566777777766655432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.|++|....|.....+.+..|++.|+..+|++....++|..+++.+...+.
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235667778899999999999999999999999999999999999999999999988877553
No 112
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.011 Score=61.84 Aligned_cols=63 Identities=10% Similarity=0.222 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 95 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~ 95 (476)
+....++--.+..++.-.+.-.-.++.+...++ ++| |.+..+|..++.|+|.++...+.+.+.
T Consensus 111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E---R~~l~s~R~~~~~~g~~l~~~~~~plv 173 (467)
T COG2211 111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE---RASLTSWRMVFASLGGLLVAVLFPPLV 173 (467)
T ss_pred chHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566777777777778888888765 444 677888999999999888777766554
No 113
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.58 E-value=0.0031 Score=66.45 Aligned_cols=111 Identities=14% Similarity=-0.033 Sum_probs=81.8
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
++..+...+..++..|+..++..+..+| +-+.+|.++.+++.+..+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 87 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWLAKRFGTR-----------RLFLISTFAFTLGSLLCGVA--------------------- 87 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHhCc---------------------
Confidence 4556666667777777766664443222 23556666666665544321
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.|++.....|.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 88 --~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 88 --PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred --CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 234556777899999999999999999999999999999999999999999999988877653
No 114
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.57 E-value=0.0032 Score=64.56 Aligned_cols=111 Identities=11% Similarity=-0.062 Sum_probs=80.8
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
++..+.+.+..++..|+..++. +|. ...+-+.+|.++.+++.+..+..
T Consensus 41 g~~~s~~~~~~~~~~~~~g~l~----dr~-------g~r~~~~~~~~~~~~~~~l~~~~--------------------- 88 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIALFS----SRY-------SLKHILLFLVALCVIGNAMFTLS--------------------- 88 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----ccC-------ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3455666777777777766553 442 22224566777777766554432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.|+++-...+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 89 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 89 --SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred --CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 235666677899999999999999999999999999999999999888899888887776543
No 115
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.56 E-value=0.0029 Score=64.88 Aligned_cols=109 Identities=14% Similarity=0.029 Sum_probs=75.7
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
..++..+...+..|+..++..+..|| +-+.+|.++.+++.+.....
T Consensus 43 ~~~~~~~~~~~~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~i~~~~~~~~----------------------- 88 (392)
T PRK10473 43 AFSVYLAGMAAAMLFAGKIADRSGRK-----------PVAIPGAALFIIASLLCSLA----------------------- 88 (392)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 33444445556667766665443222 12455666666655443321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.+++.-+..+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555667789999999999999999999999999999999999888888888887776543
No 116
>PRK10054 putative transporter; Provisional
Probab=97.55 E-value=0.0049 Score=63.62 Aligned_cols=110 Identities=7% Similarity=-0.013 Sum_probs=75.1
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+..++..+..++..|+..++..+..+| +-+.+|.++.+++++..++..
T Consensus 47 ~~~s~~~~~~~~~~~~~G~l~Dr~g~k-----------~~~~~~~~~~~~~~~~~~~~~--------------------- 94 (395)
T PRK10054 47 YAMTIALTIGVVFSLGFGILADKFDKK-----------RYMLLAITAFASGFIAIPLVN--------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhHHHHHHHHHHHHHHHHHHh---------------------
Confidence 444555556666677766654433222 235567777777666554332
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+.+..+....+.+.+.....|.....+.+..|++.|+..+|+......+|..+++.+..++.
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223334567777777778888889999999999999999999998999999888887654
No 117
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.54 E-value=0.0066 Score=51.38 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++.....++.+++.-...+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 3445556789999999999999999999999999999999999999999999988877654
No 118
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.52 E-value=0.054 Score=56.20 Aligned_cols=91 Identities=14% Similarity=0.239 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH-HhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCch
Q 011824 348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL-AGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR 426 (476)
Q Consensus 348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l-~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~ 426 (476)
+...+++|+.-.+..+++..++.+.+|++.|+..||++.. ..++|..+|..+.+.+...-+ .+.. -.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g------~~~~------~~ 372 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG------ARGM------FD 372 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc------chhh------hh
Confidence 3334689999999999999999999999999999999775 567888887777766543110 0000 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 011824 427 FDYLYWLLAVLSVINFCAFLYSAY 450 (476)
Q Consensus 427 ~~~~f~lla~l~~~~~~~~~~~~~ 450 (476)
...+|.+.+++.++..+++++.-|
T Consensus 373 ~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 373 WSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 123566777777777777776644
No 119
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.52 E-value=0.0054 Score=64.11 Aligned_cols=109 Identities=13% Similarity=-0.011 Sum_probs=75.4
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
+.+...+...+..|+..++ .+|.+ +.+-+.+|+++.+++.+..+..
T Consensus 63 ~~~~~~~~~~~~~~~~G~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~----------------------- 108 (434)
T PRK11663 63 LATLFYITYGVSKFVSGIV----SDRSN-------ARYFMGIGLIATGIINILFGFS----------------------- 108 (434)
T ss_pred HHHHHHHHHHHHHhhhhHH----HhhcC-------CchhHHHHHHHHHHHHHHHHHH-----------------------
Confidence 3344445555555555544 34432 1123567777777666544332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
-+.+.++...++.++++-...+.....+.+..|++.||..+|++.....+|..+++.+...+.
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123334455677889998888999999999999999999999999999999999988777654
No 120
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.023 Score=58.18 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHH
Q 011824 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGA 106 (476)
Q Consensus 30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g---~~~~F~i 106 (476)
+.+++.-.++++|-|.| ..-.+..+..|++++ +..+..++= ..|+|..+..++.|.+....| |+.+-.+
T Consensus 106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i 177 (417)
T COG2223 106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI 177 (417)
T ss_pred HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444445566666665 445566788898754 566777777 899999999999999988888 9999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 011824 107 LAIAMGISNMLFFIGTP 123 (476)
Q Consensus 107 ~~~~~~i~~i~f~~~~~ 123 (476)
..+.++++.+.+++..+
T Consensus 178 ~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 178 YVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999998888887644
No 121
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.51 E-value=0.0096 Score=63.47 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=81.5
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
.|..+...+...++.|+..++..+..|| +-+.+|.++.+++.+..+..
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l~D~~Grk-----------~~l~~~~~~~~~~~~~~~~a--------------------- 91 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGALGDRIGFK-----------RLLMLGGTLFGLASLAAAFS--------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHHc---------------------
Confidence 3555555666667777776665444333 23667777777776665432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE-APDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~-aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
-+.++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+.+++.
T Consensus 92 --~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 92 --PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2355567778999999999999888888666 58899999999999999999999999887764
No 122
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.46 E-value=0.011 Score=60.68 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=72.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
+.++..+...+..|+..++..+..+| +-+.++.++.+++.+..+..
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~----------------------- 104 (408)
T PRK09874 59 VFSITFLFSAIASPFWGGLADRKGRK-----------IMLLRSALGMGIVMVLMGLA----------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhCcH-----------HHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 44455556666677766654433222 12445555555555443321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 166 (408)
T PRK09874 105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA 166 (408)
T ss_pred hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355566677888888664 4677788889999999999999999988888888888877543
No 123
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.44 E-value=0.0057 Score=63.59 Aligned_cols=62 Identities=11% Similarity=-0.074 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+.++++..-+++|+++.+..+.....+.+.-|++.++..+|++.....+|..+|+.+.....
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777899999998877777777778889999999999999998899888888776543
No 124
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.44 E-value=0.0091 Score=60.35 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
.....+-+++-....+....++.+..|++.||..+|+.....+++..+|+++.+..
T Consensus 356 ~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 356 YLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 34567888899999999999999999999999999999999999999999988543
No 125
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.0079 Score=61.70 Aligned_cols=138 Identities=18% Similarity=0.112 Sum_probs=103.4
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGI-GLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 338 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~i-G~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (476)
.++.++-.+.+.+..|++..+-.++-|| |.-+ .+.+..++=+..++.
T Consensus 51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr------------~lLl~~l~lFi~~n~l~alA-------------------- 98 (394)
T COG2814 51 GQLITAYALGVALGAPLLALLTGRLERR------------RLLLGLLALFIVSNLLSALA-------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchH------------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3677888899999999987765444333 3333 333444444443332
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824 339 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 418 (476)
Q Consensus 339 ~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 418 (476)
.|.+.++..-++.+++--...+.+...+.+.+|++.|+..+|+.+....++..+|..++.++...- +|
T Consensus 99 ---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~--------GW- 166 (394)
T COG2814 99 ---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF--------GW- 166 (394)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh--------hH-
Confidence 456777888899999999999999999999999999999999999999999999988888776433 25
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011824 419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 450 (476)
Q Consensus 419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~ 450 (476)
-.-|+.+++++++..+..+...+
T Consensus 167 ---------R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 ---------RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 23677788888887777776666
No 126
>TIGR00895 2A0115 benzoate transport.
Probab=97.42 E-value=0.0014 Score=66.58 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++...++.+++.-...+.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4455667889999999999999999999999999999999999999999999988876543
No 127
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.42 E-value=0.0092 Score=61.71 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 011824 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI 380 (476)
Q Consensus 301 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~ 380 (476)
+.+|.++.+++++..... -+.++++...++.++++.+..|.....+.+.+|++.++.
T Consensus 79 l~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (400)
T PRK11646 79 IVTGMLMRAAGFATMAIA-----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR 135 (400)
T ss_pred HHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 556777777766654322 235667777899999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 381 GSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 381 ~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+|+......+|..+|+.+.+...
T Consensus 136 a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 136 FFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887654
No 128
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.36 E-value=0.016 Score=59.33 Aligned_cols=109 Identities=11% Similarity=-0.058 Sum_probs=79.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+..+...+...+..|+..++..+..+| +-+.+|.++.++++...+..
T Consensus 45 ~~~s~~~l~~~~~~~~~g~l~dr~g~k-----------~~~~~~~~~~~~~~~~~~~~---------------------- 91 (381)
T PRK03633 45 VVSSSYFTGNLVGTLLAGYVIKRIGFN-----------RSYYLASLIFAAGCAGLGLM---------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh----------------------
Confidence 455555666666667666655444333 23567777777776654432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
-+.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+....
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23455666789999999999999888888999999999999999999999999998887654
No 129
>PRK03699 putative transporter; Provisional
Probab=97.36 E-value=0.016 Score=59.64 Aligned_cols=108 Identities=11% Similarity=0.041 Sum_probs=74.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
..+...+..++..++..++..++.+| +-+.++.++.+++.+..++.
T Consensus 47 ~~s~~~~~~~i~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~l~~~~----------------------- 92 (394)
T PRK03699 47 TFTFLNAGILISIFLNAWLMEIIPLK-----------RQLIFGFALMILAVAGLMFS----------------------- 92 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHHHHHHHc-----------------------
Confidence 34445555556666655554443332 23555666666665544322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
-+.++++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+...+
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455566778999999999998999999999999999999998888888888888776543
No 130
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.36 E-value=0.0022 Score=66.55 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=78.3
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.++..+...+..|+..++..++.|| +-+.+|.++.+++.+..+.... .
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr-----------~~~~~~~~~~~~~~~~~~~~~~-------------------~ 124 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRK-----------KSLLIIALLFVIGAILMGLAAF-------------------A 124 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHhcc-------------------c
Confidence 344555555566666666654433222 2355666666666555543321 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 400 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~ 400 (476)
.+.++++...++.|+|+....+....++.+..|++.|+..+|++.....+|..+++.+.
T Consensus 125 -~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 125 -LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred -cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 23445667789999999999999999999999999999999999999999999999887
No 131
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.34 E-value=0.0006 Score=70.10 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 108 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~ 108 (476)
...++++..+.++|.+..-|.......|.++++ ++.+++.+++...++|..+++.+.+++.+..||+..|.+.+
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 344566677788888888888777777766532 37889999999999999999999999998899999999988
Q ss_pred HHHHHHHHHHHhhccceeec
Q 011824 109 IAMGISNMLFFIGTPLYRHR 128 (476)
Q Consensus 109 ~~~~i~~i~f~~~~~~~~~~ 128 (476)
+..+++++.....+++.+++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 376 LAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHhccccccc
Confidence 88888877766555544443
No 132
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.34 E-value=0.011 Score=61.19 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=79.2
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+..++..+...+..|+..++. +|.+ ..+-+.+|.++.+++.+..++.
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~----dr~g-------~r~~l~~~~~~~~~~~~~~~~~---------------------- 103 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLA----DKFG-------RKPLMMWSIVAYSVGTGLSGLA---------------------- 103 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhC-------ChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 345555566666666655554 4432 1223556777777766554433
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
.+.++++...++.|+++-...+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus 104 -~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 104 -SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 23455667788999999999999999999999999999999999999999999988776544
No 133
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.34 E-value=0.0016 Score=65.52 Aligned_cols=107 Identities=10% Similarity=-0.053 Sum_probs=75.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.++..+...+..|+..++..+..+| +-+.+|.++.+++.+..+..
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------- 80 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSVSDRSNPR-----------VFLPIGLILCAIVNLFFGFS---------------------- 80 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhCCe-----------ehhHHHHHHHHHHHHHHHHh----------------------
Confidence 344555556666666655554333222 23566777777666655433
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHH-HHH
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI-LNS 401 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~-l~~ 401 (476)
.+.++++...++.+++.-+..|.....+.+..|++.|+..+|++.....+|..+++. +..
T Consensus 81 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 81 -TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred -hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH
Confidence 234555667789999999999999999999999999999999999999999999883 443
No 134
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.34 E-value=0.003 Score=66.36 Aligned_cols=112 Identities=14% Similarity=0.297 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 011824 300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 379 (476)
Q Consensus 300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg 379 (476)
-|.+|+.+.++=++....+ -++|..+|--+++++.-.++..+..+++...||++++.
T Consensus 438 v~~lgLa~~~~Rf~~~S~L-----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~a 494 (618)
T KOG3762|consen 438 VMYLGLACNVGRFLYYSYL-----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRA 494 (618)
T ss_pred eeeehhhHHHHHHHHHHHh-----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchH
Confidence 4667777766666554433 23465678789999999999999999999999999999
Q ss_pred HHHHHHH-----HHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824 380 IGSAYAA-----LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 454 (476)
Q Consensus 380 ~~~gl~~-----l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~ 454 (476)
.++|+.- +.-++|+++||.++..+.. --.|+..++.+++..+++..+.+..++
T Consensus 495 t~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~----------------------~ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 495 TAQGLLQGIFHGLGKGLGSLIGGFVVERFGA----------------------RTTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred HHHHHHHHHhcccCcchhhhhhhhhheeehh----------------------HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9887654 3445666666655432211 126677777787777777777776666
Q ss_pred cc
Q 011824 455 RS 456 (476)
Q Consensus 455 ~~ 456 (476)
+.
T Consensus 553 ~~ 554 (618)
T KOG3762|consen 553 RG 554 (618)
T ss_pred cc
Confidence 53
No 135
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.33 E-value=0.0071 Score=61.39 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=75.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcch
Q 011824 263 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 342 (476)
Q Consensus 263 ~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (476)
.++..+...+..|+...+ .+|.+ ..+-+.+|.++.+++.+..... .
T Consensus 32 ~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~-----------------------~ 77 (377)
T PRK11102 32 LSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALA-----------------------Q 77 (377)
T ss_pred HHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHH-----------------------c
Confidence 344445555555554444 34421 2224566777777666554432 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+.+.++...++.+++.....+.....+.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444556788999999999999999999999999999999999999999999888876544
No 136
>PRK10504 putative transporter; Provisional
Probab=97.32 E-value=0.017 Score=60.73 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++...+++|++.-...|.....+.+..|++.++..+|+......+|..+++.+.+.+.
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455667899999999999999999999999999999999999888888888888876654
No 137
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0012 Score=67.01 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=111.6
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
+++.+.-++.-++.-|++..+..+...| - -|.+|++++.++-++.++.+.
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~--------i---pm~~Gl~vmf~sTilFafg~s------------------- 158 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYK--------I---PMVAGLFVMFLSTILFAFGNS------------------- 158 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccc--------c---HHHHHHHHHHHHHHHHHHcch-------------------
Confidence 3444555566666667666554433222 1 378999999888888776643
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh-HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 418 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~-kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 418 (476)
+..++.+-.++|+|..+.+..|++.+.+.-|++. ||..||.-.-..++|..+|+.+++.++..-+ .
T Consensus 159 ----y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-----k---- 225 (464)
T KOG3764|consen 159 ----YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-----K---- 225 (464)
T ss_pred ----hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-----C----
Confidence 3456778999999999999999999999999987 5999999999999999999999988775332 0
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011824 419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 457 (476)
Q Consensus 419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~ 457 (476)
.-=|.+++.++++...+-+++-+.++..++
T Consensus 226 ---------~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~ 255 (464)
T KOG3764|consen 226 ---------SAPFLVLAIVLLLDGALQLLVIEPTEMDPD 255 (464)
T ss_pred ---------cCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence 124788999999999998888888776553
No 138
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.16 Score=51.37 Aligned_cols=86 Identities=22% Similarity=0.352 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-g~~~~F~i 106 (476)
+...++.|..++++|.+....-+.+++-+-|+++ .......|-.+.++|+.+++.+++.+.++. ||+.+...
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5677889999999999988888888888888753 455677899999999999999999888777 79998887
Q ss_pred HHHHHHHHHHHHHh
Q 011824 107 LAIAMGISNMLFFI 120 (476)
Q Consensus 107 ~~~~~~i~~i~f~~ 120 (476)
=+..-++++++.+-
T Consensus 171 WAl~allAl~~WlP 184 (395)
T COG2807 171 WALLALLALLIWLP 184 (395)
T ss_pred HHHHHHHHHHHHhh
Confidence 77666666666554
No 139
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.28 E-value=0.0084 Score=61.78 Aligned_cols=108 Identities=10% Similarity=0.016 Sum_probs=78.6
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.+...+...+..|+..++..++.+| +-+.+|+++.+++.+..++.+
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r-----------~~l~~~~~l~~~~~~~~~~a~--------------------- 95 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWLHQHVSER-----------RSVAISLLLIAVGALMRELYP--------------------- 95 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHCc---------------------
Confidence 455555666666677766654443332 246788888888887765432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
+.++++..-++.|+|+....+...+.+.+..| +.|+..+|++......|..+++.+....
T Consensus 96 --~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l 155 (393)
T PRK09705 96 --QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL 155 (393)
T ss_pred --chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445667799999999999999999988887 6799999999988888888888777654
No 140
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.27 E-value=0.0022 Score=70.56 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=86.7
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh--h-------h----
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY--A-------I---- 327 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~--~-------~---- 327 (476)
++.+.+.+.-.+..++..++ ..|. ...+-+++|+++.+++.+..++.+...... . +
T Consensus 72 ~i~s~~~i~~~~~~i~v~~~----~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~ 140 (633)
T TIGR00805 72 LINGSYEIGNLLLIIFVSYF----GTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA 140 (633)
T ss_pred eeeehhhHHHHHHHHHHHHh----hccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence 45555556666665555443 3442 223358899999999988887765321000 0 0
Q ss_pred -hcCCc-c------------cccCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHH
Q 011824 328 -SHGYE-F------------SFLTAMP-DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLG 392 (476)
Q Consensus 328 -~~g~~-~------------~~~~~~~-~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g 392 (476)
+.-+. . ....... +.....++..-+++|+|+....+.+..++.+..|++.++.++|++.....+|
T Consensus 141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG 220 (633)
T TIGR00805 141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG 220 (633)
T ss_pred ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence 00000 0 0000000 0223445567799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 011824 393 CFAASILNSIIK 404 (476)
Q Consensus 393 ~~l~~~l~~~~~ 404 (476)
..+|..+++.+.
T Consensus 221 ~~lG~llgg~l~ 232 (633)
T TIGR00805 221 PAFGYLLGSFCL 232 (633)
T ss_pred hHHHHHHHHHHH
Confidence 999988877654
No 141
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.26 E-value=0.023 Score=59.13 Aligned_cols=114 Identities=9% Similarity=0.027 Sum_probs=82.1
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
+++.+...+..++..|+..++..++.+| +-+.+|+++.+++.+.......
T Consensus 41 g~l~s~~~~g~~i~~~~~g~l~~r~G~r-----------~~~~~g~~l~~~g~~l~~~~~~------------------- 90 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAIFMKKLSYK-----------AGILLGLFLYALGAFLFWPAAE------------------- 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 3455666667777777766554333222 2467788887777655432211
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
. .+.++++...++.|+|.-+..+....++.+.+|++.++..+++.....++|..+++.+...+.
T Consensus 91 ~-~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 I-MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred h-ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 245556667789999999999999999999999999999999999999999999988877553
No 142
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.23 E-value=0.086 Score=57.23 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=58.8
Q ss_pred ccCccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 011824 22 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 101 (476)
Q Consensus 22 ~~~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~ 101 (476)
..++..+...+..|..+.++|.|... .....++|..+.+. |..++.+..+..=+...+++.++..+..+.+|+
T Consensus 124 v~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR 196 (599)
T PF06609_consen 124 VCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWR 196 (599)
T ss_pred HhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence 34455677889999999999988875 44556788886532 322332333222222333455554455567999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011824 102 SAFGALAIAMGISNMLFFI 120 (476)
Q Consensus 102 ~~F~i~~~~~~i~~i~f~~ 120 (476)
+.|++.++...++++...+
T Consensus 197 w~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999887777765544
No 143
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.22 E-value=0.0012 Score=56.06 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...+.+...+.+++.+...+...+...|.+++++ |....++++...++|..+++.+.+++.+..+|+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 45566677788899999999999999999987643 678889999999999999999999998889999999988
Q ss_pred HHHHHHHHHHHH
Q 011824 108 AIAMGISNMLFF 119 (476)
Q Consensus 108 ~~~~~i~~i~f~ 119 (476)
++..+++.+...
T Consensus 124 ~~~~~~~~~~~~ 135 (141)
T TIGR00880 124 AILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHHHh
Confidence 877666655544
No 144
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.22 E-value=0.029 Score=62.74 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=76.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.++..+..++..++..++..++.|| +-+.+++++.+++.+..++.
T Consensus 206 ~l~s~~~lG~iiG~li~G~LsDR~GRR-----------~~lii~lil~~i~~ll~afa---------------------- 252 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGGLADKLGRK-----------QCLLICLSVNGFFAFFSSFV---------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHH----------------------
Confidence 445555566666666655554333222 23455655555544443322
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
.+.++++...++.|++.-...|....++.+..|++.||..++++....++|..+++.+...+
T Consensus 253 -~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 253 -QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455667789999999999999999999999999999999999999999988888766543
No 145
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.16 E-value=0.0036 Score=66.08 Aligned_cols=87 Identities=13% Similarity=-0.007 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824 299 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378 (476)
Q Consensus 299 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k 378 (476)
+-+.+++++.+++....+.... ... .+.+.++...++.|++|-...|.....+.+..|++.|
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 156 (467)
T PRK09556 95 QFLPFLLILSAICMLGFGASLG-----------------SGS-VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKR 156 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHHh-----------------ccc-chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccce
Confidence 3466777777666655443311 001 3455667778999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 379 SIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 379 g~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
|..+|++.....+|..+++.+....
T Consensus 157 g~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 157 GRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred eeeEEeeecccchhhhHHHHHHHHH
Confidence 9999999999999999998877543
No 146
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.16 E-value=0.0045 Score=65.15 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++..-+++|++|-...|.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777899999999999999999999999999999999999999999999998887654
No 147
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.14 E-value=0.01 Score=61.42 Aligned_cols=116 Identities=13% Similarity=0.008 Sum_probs=78.0
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
++..+...+..++..|+..++..++-+| +-+.++.++.+++++..++.... .
T Consensus 55 g~~~~~~~l~~~~~~~~~G~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~~~~----------------~- 106 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGVLADRYDRK-----------KLILLARGTCGLGFIGLALNAFL----------------P- 106 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhcCCc-----------eEEEehHHHHHHHHHHHHHHHHc----------------C-
Confidence 3455556666666667666554443222 12344566666665544332110 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
. .+.++++...++.+++.-+..+.....+.+..|++.++...+++.....+|..+|+.+.+.+.
T Consensus 107 ~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 107 E-PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred C-CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 1 235556667788899999999999999999999999999999998888888888888776543
No 148
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.14 E-value=0.018 Score=57.76 Aligned_cols=107 Identities=17% Similarity=0.050 Sum_probs=73.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+..++..+...+..|+...+..+..|| +-+.+|.++.+++.+..+...
T Consensus 42 ~~~s~~~~~~~~~~~~~G~l~d~~G~r-----------~~~~~~~~~~~~~~~~~~~~~--------------------- 89 (377)
T TIGR00890 42 IWFTLLLIGLAMSMPVGGLLADKFGPR-----------AVAMLGGILYGLGFTFYAIAD--------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCcc-----------chhHHhHHHHHHHHHHHHHHH---------------------
Confidence 445555666666667666654433222 125567777777765554332
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
+.+.++...++.++++-...+.....+.+..|+ .|+..++++....++|..+++.+...
T Consensus 90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITS 148 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHH
Confidence 234455566799999998888888888888885 59999999999999998876666544
No 149
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.13 E-value=0.05 Score=54.75 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=71.7
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
+++.++..+...+..|+..++..+..+| +-+.+|.++.+++.+..+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~i~~~~~~~~~-------------------- 88 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPR-----------YTTTLSLLLLAIPCLWAGLAV-------------------- 88 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4556666666677777766654433222 236677777777766554332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
.+.++++...++.+++.... +.....+.+..|++.|+..++++.....+|..+++.+..
T Consensus 89 --~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 89 --QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred --hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 13455666778889987655 556789999999999999999988666666655555543
No 150
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.10 E-value=0.044 Score=56.44 Aligned_cols=61 Identities=15% Similarity=-0.007 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++...++.+++..+..+.....+.+..|++.++..+++......+|..+++.+.....
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788899999988999999999999999988888887777777777777766543
No 151
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.07 E-value=0.045 Score=57.88 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++...++.|++.....+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677899999999999999999999999999999999999999999999998887654
No 152
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.07 E-value=0.0086 Score=63.58 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--
Q 011824 300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-- 377 (476)
Q Consensus 300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~-- 377 (476)
-+.+|.++.+++.+..++. .+.++++...++.++|+-+..|....++.++.|++.
T Consensus 81 ~l~~~~~~~~~g~~~~~~~-----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 81 TMVLGGIVLMLGHFMLAMS-----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 3667777777776655432 123344556678899999999999999999888753
Q ss_pred -HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011824 378 -KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 453 (476)
Q Consensus 378 -kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~ 453 (476)
|+...++++....+|..+|+.+...+.... +| ..-|.+.++.++++.++++...+.++
T Consensus 138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~--------g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGSFISPLLAGVIAENY--------GY----------HVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHHhc--------Ch----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 788899999999999999998887654211 23 23555566666667777766666654
No 153
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0017 Score=70.20 Aligned_cols=214 Identities=18% Similarity=0.110 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 011824 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 110 (476)
Q Consensus 31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~ 110 (476)
..|+...+...+ +..++|++++.|+++-.. -.-..+..+|..+|+.||+++++..+. .|+++...
T Consensus 61 v~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~--l~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a 125 (571)
T KOG1237|consen 61 VTYLTLELHASG-GGAANNVNAFGGTQFLLP--LLGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSA 125 (571)
T ss_pred HHHHHHHhccch-HHHHHHHHHHhhHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 345555555555 888999999999999752 222447788899999999999987654 56666666
Q ss_pred HHHHHHHHHhhccceeecC-CCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhhhHh
Q 011824 111 MGISNMLFFIGTPLYRHRL-PGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKA 189 (476)
Q Consensus 111 ~~i~~i~f~~~~~~~~~~~-p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 189 (476)
++.++..+-. .+.... ....|-+....++..++....... ++.+ ..+.+.+
T Consensus 126 ~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~-------------------gg~r------~~~~~fG 177 (571)
T KOG1237|consen 126 MIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGA-------------------GGIR------PCLLAFG 177 (571)
T ss_pred HhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheecc-------------------CCCC------Ccchhhc
Confidence 6655544332 111111 111222222223333333211100 0000 0111121
Q ss_pred hhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccc-cccCeeecCCcccchhhH
Q 011824 190 ALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT-HMGKLKLPVTCMPVFPGL 268 (476)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~-~~~g~~ip~~~~~~in~~ 268 (476)
+.. +++...++++. ....+.|..++|..+.++.|+..++. +..||.+-++..+..|.+
T Consensus 178 adQ-------------fd~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~l 236 (571)
T KOG1237|consen 178 ADQ-------------FDELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNAL 236 (571)
T ss_pred ccc-------------cCccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHH
Confidence 111 11111122221 23567899999999999999886665 456888888899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011824 269 SIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 318 (476)
Q Consensus 269 ~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~ 318 (476)
.+++|.|......++. +.-..+..+|.++.+++.-..+..
T Consensus 237 ai~iF~~g~~~y~~~~----------p~gsp~t~i~~Vlvaa~~k~~~~~ 276 (571)
T KOG1237|consen 237 AILIFLPGFPFYRYKK----------PRGSPKTRIGQVLVAAAFKRKAVV 276 (571)
T ss_pred HHHHHHcCceeEEeeC----------CCCCchhHHHHHHHHHHHHHhccC
Confidence 9999988755433222 222257888899988888765543
No 154
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.05 E-value=0.016 Score=57.27 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=80.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+..+...+..++..|+..++..+..|| +-+.+|.++.+++.+.....
T Consensus 38 ~~~~~~~~~~~~~~~~~g~~~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~---------------------- 84 (352)
T cd06174 38 LIVSAFSLGYALGSLLAGYLSDRFGRR-----------RVLLLGLLLFALGSLLLAFA---------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCc-----------hhhHHHHHHHHHHHHHHHHh----------------------
Confidence 445555566666667766654433222 13567777777766654432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.+++.-+..+....++.+..|++.|+..+++......+|..+++.+...+.
T Consensus 85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 147 (352)
T cd06174 85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147 (352)
T ss_pred -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 124556677899999999999999999999999999999999999999999999998887654
No 155
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.15 Score=53.91 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHH-H-HHhhccchhHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-V-YIQMEHGWGSAF 104 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~-~-~l~~~~g~~~~F 104 (476)
...-++.+|..+.++..|.......-++.+.-|++- |...=...=.++++|.+++..++ + .+++.-.|++.+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~ 187 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL 187 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence 356678999999999999999999998887766432 44444456678888888884443 3 445667899999
Q ss_pred HHHHHHHHHHHHHHHh
Q 011824 105 GALAIAMGISNMLFFI 120 (476)
Q Consensus 105 ~i~~~~~~i~~i~f~~ 120 (476)
+.+.+..++.++...+
T Consensus 188 ~~~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 188 AFPLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9988877776666543
No 156
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.01 E-value=0.023 Score=59.47 Aligned_cols=59 Identities=8% Similarity=-0.082 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
.+.+....++.++++....+...+.+.+..|++.||..+|++.....+|..+++.+...
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 34445567888999998889889999999999999999999999999999888776653
No 157
>PRK12382 putative transporter; Provisional
Probab=96.99 E-value=0.041 Score=56.36 Aligned_cols=118 Identities=11% Similarity=-0.008 Sum_probs=79.5
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+..+...+...+..|+..++..++.+| +-+.+|.++.+++.+...+.... .. ...
T Consensus 55 ~~~s~~~~~~~i~~~~~G~l~Dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~------~~--------~~~ 109 (392)
T PRK12382 55 IAVGIQFLATVLTRGYAGRLADQYGAK-----------RSALQGMLACGLAGLAYLLAAIL------PV--------SAP 109 (392)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhhcch-----------HHHHHHHHHHHHHHHHHHhhhcc------cc--------chh
Confidence 445566666677778877766554333 13455655555443322111100 00 001
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++..-++.|+++....|.....+.+..|++.|+..+|.+.....+|..+++.+..++.
T Consensus 110 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 110 -FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777899999999999999999999999999999999998888888888888876543
No 158
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.95 E-value=0.099 Score=55.73 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=75.5
Q ss_pred HHHHHHhhhhhhhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHH
Q 011824 276 LYYSTFVPLCRRITGHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI 354 (476)
Q Consensus 276 l~~~~~~p~~~~~~~~~~~~s~l~-ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~ 354 (476)
+...+|-|+..|.+... ....+ -+.++.++.+++....++... . .+.+|+....++.
T Consensus 60 ~~~~l~gpl~Dr~~~~~--~Grrr~~ll~~~i~~~~~~~~~a~~~~-------------------~-~~l~~l~~~~~l~ 117 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPF--LGRRRGWLLATQLLLLVAIAAMGFLEP-------------------G-TQLRWLAALAVVI 117 (491)
T ss_pred HHHHHHHHHHHcccccC--CCCchHHHHHHHHHHHHHHHHHHHcCC-------------------c-chHHHHHHHHHHH
Confidence 45556777777642110 01111 255666666666555544311 1 3466777778888
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 355 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 355 ~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+++-....+...+++.+..|++.|+...|+......+|..+++.+...+.
T Consensus 118 ~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 118 AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988776554
No 159
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.4 Score=49.14 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=51.6
Q ss_pred CccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011824 24 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 96 (476)
Q Consensus 24 ~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~ 96 (476)
++......|..+|.+++.|.|..+....+++++.-+++...+ |- |.---..-+|++++|.+.+++-.
T Consensus 99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~---rl---nl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF---RL---NLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH---HH---HHHHHhhhhHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999998854322 22 23333456899999999888754
No 160
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.28 Score=52.55 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCch
Q 011824 347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR 426 (476)
Q Consensus 347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~ 426 (476)
++..-++.|+..-...........+..+...-+-..|+.++..+++.++|+.+.+.+...++ +
T Consensus 391 l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-------~---------- 453 (509)
T KOG2504|consen 391 LIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-------N---------- 453 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC-------C----------
Confidence 34445677777777777777778888888888889999999999999999998876554332 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011824 427 FDYLYWLLAVLSVINFCAFLYSAYRYKYR 455 (476)
Q Consensus 427 ~~~~f~lla~l~~~~~~~~~~~~~~y~~~ 455 (476)
+++.|...+...+++.+.++.....++++
T Consensus 454 Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~ 482 (509)
T KOG2504|consen 454 YDHAFYFCGLCFLLSAVLLLILRECLKRR 482 (509)
T ss_pred eeeehhhcChHHHHHHHHHHHhHHHHHhc
Confidence 23456667777777777776666444433
No 161
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=96.91 E-value=0.047 Score=57.33 Aligned_cols=106 Identities=10% Similarity=-0.054 Sum_probs=69.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824 264 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 343 (476)
Q Consensus 264 ~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s 343 (476)
+...+...+..|+..++ .+|.+ ..+-+.+|.++.+++.+..++.... . -+
T Consensus 70 ~~~~i~~~~~~~~~G~l----~Dr~g-------~k~~l~~~~~~~~i~~~~~~~~~~~------------------~-~~ 119 (452)
T PRK11273 70 SGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------T-SS 119 (452)
T ss_pred HHHHHHHHHHHhhhhhh----hhccC-------CchhHHHHHHHHHHHHHHHHhhhcc------------------c-cc
Confidence 33344444555555544 44432 1123566777777776655543210 0 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHH
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL 399 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l 399 (476)
.++++...++.++++....|.....+.+..|++.|+..+|++.....+|..+.+.+
T Consensus 120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45556667889999998888877888889999999999999999888887554433
No 162
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=96.87 E-value=0.02 Score=60.22 Aligned_cols=119 Identities=13% Similarity=-0.005 Sum_probs=77.0
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
..+...+...+..++..++..++.|| +-+.++.++.+++.+..+..+..... ... +..
T Consensus 60 ~~s~~~ig~~~~~~~~G~l~dr~Grr-----------~~~~~~~~l~~i~~~~~~~~~~~~~~--~~~--------~~~- 117 (479)
T PRK10077 60 CVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISALGSAWPEFGFTS--IGP--------DNT- 117 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHhhcccccc--ccc--------cch-
Confidence 33444455556666655554443333 13556666666665555443221000 000 001
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
..+.+++..-++.|++.-...|....++.+..|++.||.++|++.....+|..++..+...
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 178 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF 178 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234456677999999999999999999999999999999999999999998887766543
No 163
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.86 E-value=0.05 Score=55.76 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccC
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 422 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l 422 (476)
+.++++..-++.|+||-. .+.....+.+..|++.|+..++++.....+|..+++.+..++... .+|-
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~--------~gWr---- 144 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA--------GGLQ---- 144 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------cchH----
Confidence 466778888999999986 456666678899999999999999999999999999888766431 1362
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHh
Q 011824 423 NTGRFDYLYWLLAVLSVINFCAFLYS 448 (476)
Q Consensus 423 n~~~~~~~f~lla~l~~~~~~~~~~~ 448 (476)
..|.+.++++++..++.+..
T Consensus 145 ------~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 145 ------LLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred ------HHHHHHHHHHHHHHHHHHHH
Confidence 35566677766655544443
No 164
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.84 E-value=0.046 Score=56.37 Aligned_cols=84 Identities=10% Similarity=-0.038 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 011824 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI 380 (476)
Q Consensus 301 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~ 380 (476)
+.++.++.++++...++... . .+.++++..+++.++......|...+++.+..|++.|+.
T Consensus 71 l~~~~~~~~l~~~~l~~~~~-------------------~-~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~ 130 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCPP-------------------H-AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGA 130 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCc-------------------c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Confidence 56666666666665543321 1 345556666678888999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 381 GSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 381 ~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+.++.....++|..+++.+...+.
T Consensus 131 ~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 131 GAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999988776554
No 165
>TIGR00898 2A0119 cation transport protein.
Probab=96.82 E-value=0.0094 Score=63.39 Aligned_cols=108 Identities=12% Similarity=0.016 Sum_probs=77.4
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+.+++..+..++..++...+-.++.|| +-+.++.++.+++.+..++.
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr-----------~~~~~~~~~~~i~~~~~~~~---------------------- 177 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGRK-----------KVLLLSTLVTAVSGVLTAFS---------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccch-----------HHHHHHHHHHHHHHHHHHHc----------------------
Confidence 455666666667777766554433222 12445555555554443321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
.+.++++...++.|++.-...+....++.+..|++.|+..++++....++|..+++.+..+
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355667788999999999999999999999999999999999999999999888877654
No 166
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.81 E-value=0.069 Score=56.93 Aligned_cols=61 Identities=16% Similarity=-0.008 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
+.++++...++.|+++-...+....++.+.+|++.||..++++.....+|..+++.+...+
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777889999999999999999999999999999999999999999998888877654
No 167
>PTZ00207 hypothetical protein; Provisional
Probab=96.77 E-value=0.09 Score=57.18 Aligned_cols=119 Identities=12% Similarity=0.047 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011824 297 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 376 (476)
Q Consensus 297 ~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~ 376 (476)
+.+-+.+|.++.+++.+..++... + ... .+.+.+....++.|+|+.+..+.....+.+..| +
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~~---------~-------~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~ 151 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTFQ---------E-------VIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S 151 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc---------c-------ccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h
Confidence 334577888888888887765421 0 011 345556667889999999999999999999887 6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011824 377 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 452 (476)
Q Consensus 377 ~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y 452 (476)
.||.++|++....++|..+.+.+...+.. . .| ..+++++++++++..++.+.+.+..
T Consensus 152 ~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~--------~~----------~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 152 NRGAVVAIMKTFTGLGSAILGSIQLAFFS-D--------NT----------SAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------hH----------HHHHHHHHHHHHHHHHHHHhheeCC
Confidence 78999999999999999865544432211 1 12 2466667777777666666655544
No 168
>PRK11043 putative transporter; Provisional
Probab=96.74 E-value=0.076 Score=54.52 Aligned_cols=61 Identities=15% Similarity=0.014 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++...++.|++.....+.....+.+..|++.++...+......++|..+++.+...+.
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666788889888888888888999999998888888877777777777777766543
No 169
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.73 E-value=0.11 Score=53.10 Aligned_cols=61 Identities=7% Similarity=-0.016 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++...++.+++.....+...++..+..|++.++..++++.+...++..+++.+.....
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666788899888888888889988899999999999998888888888888776544
No 170
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.72 E-value=0.038 Score=58.19 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHH
Q 011824 352 CLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLY 431 (476)
Q Consensus 352 ~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f 431 (476)
++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+...+.... +| ..-|
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~--------gw----------r~~f 176 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF--------GW----------RGSF 176 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--------Ch----------HHHH
Confidence 66788888766666777777666 68999999999999999998888776544211 24 2356
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011824 432 WLLAVLSVINFCAFLYS 448 (476)
Q Consensus 432 ~lla~l~~~~~~~~~~~ 448 (476)
++.++++++..+..++.
T Consensus 177 ~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 177 LILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66677666655544433
No 171
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.59 E-value=0.053 Score=57.24 Aligned_cols=84 Identities=12% Similarity=0.126 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 011824 300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 379 (476)
Q Consensus 300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg 379 (476)
-+.+|++.-.+++.+.++.+. -|++-...+....-....|...+++.+++.++-+|
T Consensus 310 ~i~lGl~~~~~~~~~~af~~~------------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g 365 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFATE------------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQG 365 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhcc------------------------chhhhHHHHHHHhhcchhHHHHhHHHhhccccccc
Confidence 467788888888877776542 13333445555666788999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 011824 380 IGSAYAALAGGLGCFAASILNSIIKSVT 407 (476)
Q Consensus 380 ~~~gl~~l~~a~g~~l~~~l~~~~~~~~ 407 (476)
..+++.....++.+.+++.+.+.+...+
T Consensus 366 ~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 366 KVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999999999999988776555
No 172
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.58 E-value=0.063 Score=63.12 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++...++.|++..+..|....++.+..|++.|+.++|+......+|..+|+.++.++.
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777899999999999999999999999999999999999999999999988887654
No 173
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.19 Score=51.33 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=76.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+.+.++++..+=++|......+-.++++|-|+++.. |.+...+---.+.+|.++||...+.+-+..|+.+.|++
T Consensus 157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV 231 (464)
T KOG3764|consen 157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV 231 (464)
T ss_pred chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence 3566888999999999999999999999999998653 67888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 011824 107 LAIAMGISNMLFFI 120 (476)
Q Consensus 107 ~~~~~~i~~i~f~~ 120 (476)
.++.+++..++-++
T Consensus 232 L~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 232 LAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHHh
Confidence 99887766555433
No 174
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.54 E-value=0.32 Score=51.32 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
|.+.+...-++.|++|.... ....++++..|++.|+.++|++..+..+|..+++.++.+.
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777899999999999 9999999999999999999999999999999999999873
No 175
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.013 Score=64.20 Aligned_cols=153 Identities=11% Similarity=0.128 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh----hhhhh-----hcC-------------Cc--cc-ccC---CCcchhHH-HHH
Q 011824 298 LQRVGIGLAVSILSVIWAGIFERYR----RNYAI-----SHG-------------YE--FS-FLT---AMPDLSAY-WLL 348 (476)
Q Consensus 298 l~ki~iG~~l~~ls~~~~~~~~~~~----~~~~~-----~~g-------------~~--~~-~~~---~~~~~s~~-wli 348 (476)
++-|++|.++++++.++.++-+..- .+... +.. -. .+ ++. ...+..+| .++
T Consensus 162 Pr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff 241 (735)
T KOG3626|consen 162 PRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFF 241 (735)
T ss_pred cceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHH
Confidence 4469999999999999888776541 11100 000 00 00 000 01101122 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhc-----cCCCC--CCCCCccccc
Q 011824 349 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV-----TGNPK--KGQPNWLAQN 421 (476)
Q Consensus 349 p~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~-----~~~~~--~~~~~~~~~~ 421 (476)
..-++.|+|+.-+.+.|.+++.+-+-++...++.|+.+....+|..+|-+++++..++ ..++. ..||.|+
T Consensus 242 ~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI--- 318 (735)
T KOG3626|consen 242 LGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI--- 318 (735)
T ss_pred HHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh---
Confidence 5679999999999999999999999999999999999988887777777776654432 11001 1256664
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 011824 422 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 456 (476)
Q Consensus 422 ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~ 456 (476)
|.-..-|.+.++++++..+.++.+-|.+.+..
T Consensus 319 ---GAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 319 ---GAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 11122355688889999999999888887543
No 176
>PRK10133 L-fucose transporter; Provisional
Probab=96.53 E-value=0.22 Score=52.21 Aligned_cols=110 Identities=12% Similarity=0.033 Sum_probs=75.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
+.....+...+..|+...+..++.+| +-+.+|+++.+++.+....... .
T Consensus 66 ~~~~~~~g~~i~~~~~g~l~dr~G~r-----------~~l~~g~~~~~~~~~l~~~~~~-------------------a- 114 (438)
T PRK10133 66 IQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE-------------------I- 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHHh-------------------c-
Confidence 44455556666666655554333222 2466777777777654321110 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
.+.++++...++.|+|.-+..+....++.+.+|++.+...++++....++|..+++.+...
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788999999999999999999998888888777888888888888888777654
No 177
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.51 E-value=0.61 Score=48.12 Aligned_cols=87 Identities=22% Similarity=0.332 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824 299 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378 (476)
Q Consensus 299 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k 378 (476)
+-+-+|+++..+..+.....+. + .. +|..- ++.+.+.-=+....=++..+.+|++..
T Consensus 319 ~vl~~~lvi~~~~~~~~~~~~~-------------------~-~~-f~i~g--ll~g~s~G~~qA~SRSy~~~lvp~~k~ 375 (438)
T COG2270 319 PVLMIGLVILSIAALYLIFLEG-------------------E-LD-FWILG--LLVGTSLGGAQASSRSYLARLVPKGKE 375 (438)
T ss_pred eeehHHHHHHHHHHHHHHHccc-------------------c-HH-HHHHH--HHHHHhcchHHHHHHHHHHHhCCCccc
Confidence 4566777776666555444331 1 22 33332 555555556667777899999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhccC
Q 011824 379 SIGSAYAALAGGLGCFAASILNSIIKSVTG 408 (476)
Q Consensus 379 g~~~gl~~l~~a~g~~l~~~l~~~~~~~~~ 408 (476)
+...|++.++.=.++.+|+.+.+.+..+|+
T Consensus 376 ~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 376 GRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred cceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887774
No 178
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.49 E-value=0.13 Score=51.73 Aligned_cols=63 Identities=16% Similarity=0.042 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.+++...+++.++.-.+..|...+++.+..|++.|+...|+......+|..+++.+...+.
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666778888888899999999999999999999999999999999999988886554
No 179
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.45 E-value=0.17 Score=50.92 Aligned_cols=89 Identities=12% Similarity=-0.008 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCccccc
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG--SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 421 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~--~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (476)
.++++..-++++.++....|...+.+.+..|++.|+.. .+......++|..+++.+.......- +|
T Consensus 87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--------~~---- 154 (375)
T TIGR00899 87 YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF--------GF---- 154 (375)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc--------cc----
Confidence 34444455667777777888888888888888776643 56666666777777777766543211 23
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011824 422 INTGRFDYLYWLLAVLSVINFCAFLYSAY 450 (476)
Q Consensus 422 ln~~~~~~~f~lla~l~~~~~~~~~~~~~ 450 (476)
...|++.+.++++..++.+...+
T Consensus 155 ------~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 155 ------TVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 23556666666655555444333
No 180
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.38 E-value=0.13 Score=54.48 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=92.9
Q ss_pred hhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 011824 216 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGA 295 (476)
Q Consensus 216 ~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~ 295 (476)
+++++.-.+...-+.|.+..-..+-+ .|...++.. -...+..+.++.-++..|+..++-.+...|.+++
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~y-l~~lg~~~~------~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR---- 73 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPY-VQELGIPHA------WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR---- 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHH------HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----
Confidence 45555555555555555533333222 222222221 1234556677888888888877766543344322
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 011824 296 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 375 (476)
Q Consensus 296 s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~ 375 (476)
++. +..|.+..+++++..+.......... +..+...+....++.+..+.+..++--+..+..-+++.+..|+
T Consensus 74 rp~--il~g~~~~~~~l~ll~~~~~~~~~~~------~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~ 145 (477)
T TIGR01301 74 RPF--IAAGAALVAFAVILIGFAADIGHLFG------DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGG 145 (477)
T ss_pred HHH--HHHHHHHHHHHHHHHHhCchhhhhcc------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 221 34456666666666554432110000 0000011102233444445555556666667778999999999
Q ss_pred hhH--HHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 376 AMK--SIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 376 ~~k--g~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
+.| +...+......++|+.+|..+....
T Consensus 146 ~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 146 DARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 5678888888899999988877653
No 181
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.37 E-value=0.00054 Score=73.71 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=3.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh----hhhhh-----h---cC-C--------cc------cccCCCcchhHHHHHH
Q 011824 297 QLQRVGIGLAVSILSVIWAGIFERYR----RNYAI-----S---HG-Y--------EF------SFLTAMPDLSAYWLLI 349 (476)
Q Consensus 297 ~l~ki~iG~~l~~ls~~~~~~~~~~~----~~~~~-----~---~g-~--------~~------~~~~~~~~~s~~wlip 349 (476)
.++-+++|.++++++.++.++-+..- ..... + .. + .+ .......+...++++.
T Consensus 67 rprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 146 (539)
T PF03137_consen 67 RPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFIL 146 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHH
Confidence 45679999999999998887665431 11000 0 00 1 00 0001111123455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhc----cCCC------CCCCCCccc
Q 011824 350 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV----TGNP------KKGQPNWLA 419 (476)
Q Consensus 350 ~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~----~~~~------~~~~~~~~~ 419 (476)
.-+++|+|..-+.+.|.+++.+.++++..++++|+.+....+|..+|-++++..-++ ...+ ..+||.|+.
T Consensus 147 gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvG 226 (539)
T PF03137_consen 147 GQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVG 226 (539)
T ss_dssp -----SSS------------------------------------------------------------------------
T ss_pred HHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHH
Confidence 779999999999999999999999999999999999999888887776665533221 1000 112444531
Q ss_pred ccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011824 420 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 455 (476)
Q Consensus 420 ~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~ 455 (476)
. =..-|.+.+.+.++..+.++.+-|++...
T Consensus 227 A------WWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 227 A------WWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ------------------------------------
T ss_pred H------HHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 0 01124457777777777777777766444
No 182
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.33 E-value=0.27 Score=50.66 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=72.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+..+...+...+..|+..++..+..+ .+-+.+|.++.+++.+....... ..
T Consensus 52 ~~~~~~~~~~~i~~~~~g~l~dr~g~-----------k~~l~~~~~~~~~~~~~~~~~~~------------------~~ 102 (402)
T TIGR00897 52 SAFTLYGIAAAISAWISGVVAEIIGP-----------LKTMMIGLLLWCVGHAAFIVFGL------------------GH 102 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHHHHHHHhc------------------cC
Confidence 34455555666666666555433322 22355677776666543322111 01
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHH-HHHHHHHHH
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGC-FAASILNSI 402 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~-~l~~~l~~~ 402 (476)
.+.+.++...++.+++.-...+.....+.+..|++.|+..+|++....++|. .+++.+...
T Consensus 103 -~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 103 -ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred -ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2344445567888999888888888888889999999999999999988886 466666543
No 183
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.30 E-value=1.5 Score=48.60 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----------
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------- 97 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~----------- 97 (476)
..+|++|..+.++|.--+-|-=.+.+=|...+ ++...++.++|..--+|-++|.++++++-+-
T Consensus 237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i 310 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKK------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI 310 (735)
T ss_pred HHHHHHHHHHhhcCCCCCccCCCccccccccc------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence 44788888888888766555444443333332 2357788999999999999999998876421
Q ss_pred --------cchhHHHHHHHHHHHHHHHHHHhh
Q 011824 98 --------HGWGSAFGALAIAMGISNMLFFIG 121 (476)
Q Consensus 98 --------~g~~~~F~i~~~~~~i~~i~f~~~ 121 (476)
-.||++|++++..++++.+.++..
T Consensus 311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f 342 (735)
T KOG3626|consen 311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFF 342 (735)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 149999999999988888777654
No 184
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.29 E-value=0.091 Score=56.03 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--
Q 011824 299 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA-- 376 (476)
Q Consensus 299 ~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~-- 376 (476)
+-+.+|.++.+++.+.+++... . ... ++...+++++|+-+..|....++.++-|++
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~~-------------------~-~~l--l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~ 139 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSLL-------------------K-PDL--IFIALGTIAVGNGLFKANPASLLSKCYPPKDP 139 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-------------------c-hhH--HHHHHHHHHhccccccCCHHHHHHHhcCCCch
Confidence 3577888888887766654311 0 111 234568889999999999999999999877
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 377 MKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 377 ~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.|+...+.+++...+|..+|+.+..++.
T Consensus 140 ~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 140 RLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4477889999999999999988887764
No 185
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.26 E-value=0.25 Score=50.83 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=76.3
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
+++.+...+...++.|+..++-.++.||+ -+.++.++.+++.+..+..
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~-----------vl~~~~~~~~~~~~~~~~~--------------------- 88 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGR-----------VMFIANGIKLLGCLLMLFG--------------------- 88 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCch-----------hhHHHHHHHHHHHHHHHHH---------------------
Confidence 34556666677777888776654443331 2445555555544332221
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+. +...+++|+++.+..|...+.+.+..|++.++..+|++.....+|..+|+.++++..
T Consensus 89 --~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 89 --IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred --HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 334578999999999999999999999999999999999888888888888887654
No 186
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.25 E-value=0.045 Score=55.20 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 011824 300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 379 (476)
Q Consensus 300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg 379 (476)
-+.+|.++.+++.+..+...... . ... ...++++...+++|++.-...+....++.+..|++.|+
T Consensus 67 ~l~~~~~~~~~~~~~~~~~~~~~-----------~---~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 131 (394)
T TIGR00883 67 TLVITLLMMGIGTLLIGLLPSYA-----------T---IGI-WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG 131 (394)
T ss_pred HHHHHHHHHHHHHHHHhhCCChh-----------h---hHH-HHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch
Confidence 35567777777666555432210 0 000 22334566778999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 380 IGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 380 ~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
..++++.....+|..+++.+...+.
T Consensus 132 ~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 132 FYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776543
No 187
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.23 E-value=0.011 Score=61.71 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhc------cchh
Q 011824 29 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWG 101 (476)
Q Consensus 29 ~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY-~~iNiGa~i~~~l~~~l~~~------~g~~ 101 (476)
...+++...+.+++.+...+....++.|.+++++ |.+++.+++ ...++|..+||.+.|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4556677778888888888999999999988532 788899997 56789999999999999887 4699
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 011824 102 SAFGALAIAMGISNMLFFI 120 (476)
Q Consensus 102 ~~F~i~~~~~~i~~i~f~~ 120 (476)
..|.++++..+++.+.++.
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887776666555443
No 188
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.11 E-value=0.2 Score=50.45 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=72.2
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
++..+++.+...+..|+..++..++.+| +-+.+|.++.+++.+.. ..
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~-~~--------------------- 84 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWLARRFGEE-----------RSVAAGLLLIAAGILIR-SA--------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCch-----------HHHHHHHHHHHHHHHHH-Hh---------------------
Confidence 3455666777777777777665443322 23566666655554332 10
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
.+.++++...++.+++.-+..+.....+.+..|+ .|+..+|++.....+|..+++.+...+
T Consensus 85 --~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 85 --PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred --ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445567888999988887777777777774 789999999998888888888776554
No 189
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.085 Score=55.82 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011824 297 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 376 (476)
Q Consensus 297 ~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~ 376 (476)
..+-+.++.++.+++-+..-+... .+.+.++..-+++|++|-...|..-....+-+|+.
T Consensus 102 ~r~v~~~~~~~sa~~t~l~P~aa~---------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~ 160 (466)
T KOG2532|consen 102 ARRVFFISGLISALLTLLTPLAAS---------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN 160 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH---------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH
Confidence 444577787777766555444322 33445677789999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011824 377 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 450 (476)
Q Consensus 377 ~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~ 450 (476)
.|+...++.+....+|..++-.+.+..-..+ -+|- .-|.+.++++++-.+++..+.+
T Consensus 161 Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-------~GW~----------sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 161 ERSTFIAILTAGSQLGTIITMPVSGLLCESS-------LGWP----------SIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-------CCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998899888877776544211 2473 4566678888777777766655
No 190
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.04 E-value=0.17 Score=59.74 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+.++++..-+++|+++.+..|+..+.+.+..|++.++..+|+.....++|..+|+.+.+++.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788899999999999999999999999999999999999999999999999998765
No 191
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.01 E-value=0.32 Score=51.89 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcC
Q 011824 345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINT 424 (476)
Q Consensus 345 ~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~ 424 (476)
+-++...+++|+.|-...|........-=.++.+|..+|+|+...++|+.+|+++..-+.+... ..+-.+|
T Consensus 135 ~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~--~~~~~gW------- 205 (495)
T KOG2533|consen 135 PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG--SGGLAGW------- 205 (495)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC--CCCcCCc-------
Confidence 3345667999999999999999999999999999999999999999999999999876543221 1112345
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 011824 425 GRFDYLYWLLAVLSVINFCA 444 (476)
Q Consensus 425 ~~~~~~f~lla~l~~~~~~~ 444 (476)
-+.|.+-++++++.+++
T Consensus 206 ---~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 206 ---RWLFIIEGVITLVLGIV 222 (495)
T ss_pred ---eeehhHHHHHHHHHHhe
Confidence 25777778877776654
No 192
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=1.5 Score=46.17 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchh
Q 011824 348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRF 427 (476)
Q Consensus 348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~ 427 (476)
...+++.|+++.+....-+..+....| +-+..+-+++-+..++++-++-...... .+
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~----------------------~l 413 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL----------------------LL 413 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh----------------------HH
Confidence 445799999999999999999999994 4556677777777777776644332110 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011824 428 DYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 458 (476)
Q Consensus 428 ~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~ 458 (476)
..+...+.+++.+..+++...+++++...++
T Consensus 414 ~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k 444 (461)
T KOG3098|consen 414 YIYTLGLPIFCVIATTIFFIVAERTQAMEKK 444 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2355567778888888888888888654433
No 193
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=95.92 E-value=0.27 Score=52.52 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--
Q 011824 300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-- 377 (476)
Q Consensus 300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~-- 377 (476)
-+.+|.++.+++....++.. .+..++....++.++|.-+..|....++.++-|++.
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~ 147 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR 147 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence 46677777777655544321 112234455678899999888888899999887643
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824 378 KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 454 (476)
Q Consensus 378 kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~ 454 (476)
++...++++....+|..+|+.+.+++.... +| .+-|.+.++.+++..+.++...+.++.
T Consensus 148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~--------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 148 LDGAFTMYYMSINIGSFFSMLATPWLAAKY--------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHhh--------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 344678888999999999988887654211 23 235555666666666677766655554
No 194
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.88 E-value=0.46 Score=50.38 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011824 345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 400 (476)
Q Consensus 345 ~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~ 400 (476)
+.++...++.|+++....+ ....+.+..|++.||..+|++.....+|..+++.+.
T Consensus 125 ~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~ 179 (476)
T PLN00028 125 TGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM 179 (476)
T ss_pred HHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556888999876543 456788899999999999998766556666555444
No 195
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=95.73 E-value=3.4 Score=43.80 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH---
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF--- 104 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F--- 104 (476)
+...+.+..++.++|.|..- .....+...+++++ |.++.+++-.+.++|.++++.+++++. ++||+.-+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence 56778888889999999988 99999999998533 788899999999999999999999854 67876544
Q ss_pred HHHHHHHHHHHHHHH
Q 011824 105 GALAIAMGISNMLFF 119 (476)
Q Consensus 105 ~i~~~~~~i~~i~f~ 119 (476)
.|+...+.+++++-+
T Consensus 186 ~Isl~s~~~a~~~a~ 200 (511)
T TIGR00806 186 IISLVFMTFSVFLAL 200 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555433
No 196
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.73 E-value=0.36 Score=50.32 Aligned_cols=107 Identities=10% Similarity=0.041 Sum_probs=74.0
Q ss_pred HHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHH
Q 011824 275 SLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI 354 (476)
Q Consensus 275 pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~ 354 (476)
|+-..+.-++..|.++ .+-+.+++++.+++.+..++...+.. ... .++.+++..-+++
T Consensus 77 ~ig~~~~G~l~Dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~l~~~R~l~ 134 (432)
T PRK10406 77 PIGGWLFGRIADKHGR-------KKSMLISVCMMCFGSLVIACLPGYET--------------IGT-WAPALLLLARLFQ 134 (432)
T ss_pred HHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHhhcCCchh--------------HHH-HHHHHHHHHHHHH
Confidence 4444455555666432 23466777777776666554321100 001 2345667778999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 355 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 355 ~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
|+||-...|....++.+..|++.||..++++......|..++..+...+
T Consensus 135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888888877665443
No 197
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.67 E-value=0.49 Score=50.94 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=77.1
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
+.+++...+..+++.|+-..+..++-||+ -+..+-++.++..+..++.... .
T Consensus 48 alv~~a~~LP~~Llsl~aG~laDr~drrr-----------ili~~~~~~~~~~~~L~~l~~~-----------------~ 99 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALADRFDRRR-----------ILILSQLLRALVALLLAVLAFF-----------------G 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchH-----------HHHHHHHHHHHHHHHHHHHHHh-----------------C
Confidence 45677778888888888777765554431 1233333333333333333221 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
. .+++.++...++.+++..+..|+-.+.+-++.|++.-....++......++..+|+.+++.+
T Consensus 100 ~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L 162 (524)
T PF05977_consen 100 L-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL 162 (524)
T ss_pred c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 1 56676777789999999999999999999999998887777777776666666666665543
No 198
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=95.62 E-value=1.1 Score=48.03 Aligned_cols=84 Identities=15% Similarity=0.246 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-~g~~~~F~i 106 (476)
+...+++|.++.++|.|+..-.+.-+++|.-+++ .|...-+.+.+++++|.+++..+....++. .+|+..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 7788999999999999999866666666665432 377788889999999999995554444432 489988877
Q ss_pred HHHHHHHHHHH
Q 011824 107 LAIAMGISNML 117 (476)
Q Consensus 107 ~~~~~~i~~i~ 117 (476)
..+..++-.+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 66654443333
No 199
>PRK15011 sugar efflux transporter B; Provisional
Probab=95.56 E-value=1.1 Score=45.94 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH--HHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccC
Q 011824 345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK--SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 422 (476)
Q Consensus 345 ~wlip~~~l~~igEll~~p~~lef~~~~aP~~~k--g~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l 422 (476)
++++....+.+..+....|.....+.+..|++-| +.+.++.....++|..+++.+...+...- +|
T Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~--------gw----- 172 (393)
T PRK15011 106 FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF--------SF----- 172 (393)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc--------Ch-----
Confidence 3333334455555667788888888877766544 45567777788888888888887654211 24
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 011824 423 NTGRFDYLYWLLAVLSVINFCAFLYSAY 450 (476)
Q Consensus 423 n~~~~~~~f~lla~l~~~~~~~~~~~~~ 450 (476)
...|++.++++++..+..+...+
T Consensus 173 -----~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 -----TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhhcC
Confidence 23556666666665554443333
No 200
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=95.53 E-value=1.2 Score=46.97 Aligned_cols=116 Identities=12% Similarity=0.063 Sum_probs=70.5
Q ss_pred cCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccC
Q 011824 258 PVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT 337 (476)
Q Consensus 258 p~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~ 337 (476)
.++++..+..+..+... +.....-++..|.+ +.+-+.+++++.++..+..++...
T Consensus 68 s~~q~g~l~ai~~l~~a-l~rip~G~l~Dr~G-------~R~v~~~~~ll~~i~~~~~~~a~~----------------- 122 (462)
T PRK15034 68 TTDQLFLLTALPSVSGA-LLRVPYSFMVPIFG-------GRRWTVFSTAILIIPCVWLGIAVQ----------------- 122 (462)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC-------ChHHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence 34444433333333332 22333345556643 333456677776666665544211
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH----HHhHHHHHHHHHHH
Q 011824 338 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA----LAGGLGCFAASILN 400 (476)
Q Consensus 338 ~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~----l~~a~g~~l~~~l~ 400 (476)
... .|.+.++...++.|++ -...+.++..+.+..|++.||+.+|++. +...++..+.+.+.
T Consensus 123 ~~~-~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 123 NPN-TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred ccC-CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 001 3566677788999998 5588889999999999999999999994 44445555555544
No 201
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=95.42 E-value=0.59 Score=49.67 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred HHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHH
Q 011824 275 SLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI 354 (476)
Q Consensus 275 pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~ 354 (476)
|+-..+.-++..|.++ .+-+.+++++.+++.+..++...+.. -| . ..+.+++..-+++
T Consensus 71 ~ig~~~~G~l~Dr~Gr-------r~~l~~~~~l~~i~~~~~a~~~~~~~-----~g---------~-~a~~~l~~~R~l~ 128 (490)
T PRK10642 71 PLGGLFFGMLGDKYGR-------QKILAITIVIMSISTFCIGLIPSYAT-----IG---------I-WAPILLLLCKMAQ 128 (490)
T ss_pred HHHHHHHHHHHHhccc-------HHHHHHHHHHHHHHHHHHHhcccHHH-----HH---------H-HHHHHHHHHHHHH
Confidence 3444444455565432 23467788888887777665543200 00 0 1223466778999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 355 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 355 ~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
|+|+-...+.+..++.+..|++.||.+++++.....+|..+|+.+..++
T Consensus 129 G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 129 GFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888887766543
No 202
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.21 E-value=0.42 Score=49.27 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=73.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824 295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 374 (476)
Q Consensus 295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP 374 (476)
-+|.+=|++|++++++..+..+.. .|.+.+...++++|+-+-.-.|..-..++.--|
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs-----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfs 147 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFS-----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFS 147 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhh-----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcC
Confidence 466677899999999998887654 345556677899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 375 DAMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 375 ~~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
++.||...++|..+..+|..+.+.+..
T Consensus 148 r~eRG~~~siWn~shNiGGal~~~~~~ 174 (448)
T COG2271 148 RKERGTWWSIWNTSHNIGGALAPLVAL 174 (448)
T ss_pred ccccCceEEEehhhhhcccchHHHHHH
Confidence 999999999999999999999998883
No 203
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=95.21 E-value=1.5 Score=43.17 Aligned_cols=87 Identities=10% Similarity=0.277 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHH
Q 011824 350 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 429 (476)
Q Consensus 350 ~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~ 429 (476)
...++|++--++.-..--.+....|++.-|+.-|+...-..+|-.+.+++++++.. + ++++ -.++.
T Consensus 358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d--~-----~g~y-------~~le~ 423 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD--G-----DGSY-------DNLEA 423 (459)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec--C-----CCch-------hhHHH
Confidence 45778888888888788888899999999999888888888888887777776542 1 1222 13566
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 011824 430 LYWLLAVLSVINFCAFLYSAY 450 (476)
Q Consensus 430 ~f~lla~l~~~~~~~~~~~~~ 450 (476)
||.....+++.+..+.+...|
T Consensus 424 ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 424 FFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred HHHHHHHHHHHHHHHHhheec
Confidence 887777777777666655444
No 204
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.87 Score=46.17 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=88.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824 295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 374 (476)
Q Consensus 295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP 374 (476)
.++.+-+..++++.+++... |. . .+.+-++...++.+.|-..+++..-+++=+.-|
T Consensus 74 ~g~er~l~~~Llli~~G~~i-------R~-----~------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp 129 (395)
T COG2807 74 FGEERSLFLALLLIAAGILI-------RS-----L------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP 129 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHH-------Hh-----c------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc
Confidence 56677788888876665432 21 0 223445667789999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824 375 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 454 (476)
Q Consensus 375 ~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~ 454 (476)
++. +.+||+|..+.++|..+++.+...+.... .+|- ....+ .+.++++++++++-...|++.
T Consensus 130 k~~-~~mtglYs~sl~~~aaLaa~lavpla~~~-------~gW~--------~aL~~--WAl~allAl~~WlPq~~r~~~ 191 (395)
T COG2807 130 KRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS-------GGWR--------GALGF--WALLALLALLIWLPQALREQA 191 (395)
T ss_pred cch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh-------ccHH--------HHHHH--HHHHHHHHHHHHhhhcccccc
Confidence 987 79999999999999999988876554321 1352 22233 366777777777766544432
Q ss_pred cc-cccCCCcccccccc
Q 011824 455 RS-EQKHGNDYEVMENK 470 (476)
Q Consensus 455 ~~-~~~~~~~~~~~~~~ 470 (476)
.+ ..+..+...+-.|+
T Consensus 192 ~~~~~~~~~~~~vw~~~ 208 (395)
T COG2807 192 ASIATKLVSVRKVWRSP 208 (395)
T ss_pred cccccccccccccccCc
Confidence 22 22334444444444
No 205
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.14 E-value=0.12 Score=53.50 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=72.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcch
Q 011824 263 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 342 (476)
Q Consensus 263 ~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (476)
.++..+.-.+..|++..+..+..+|.+++ +| -+.+|.++.+++++........ ... .
T Consensus 41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grr----r~--~i~~~~~~~~i~~~~~~~~~~~----------------~~~-~ 97 (437)
T TIGR00792 41 FLVARILDAITDPIMGNIVDRTRTRWGKF----RP--WLLIGAIPFSIVLVLLFTTPDF----------------SAT-G 97 (437)
T ss_pred HHHHHHHHHhccchheEeeecCCCCCCCc----ch--hHHHhHHHHHHHHHHHHhCCCC----------------Ccc-h
Confidence 33444444555555555544432222221 11 3566777777666554332110 011 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA-PDAMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~a-P~~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
..+|.+..+++.+++..+..+...+.....+ |++.|+...+.......+|..+++.+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~ 158 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP 158 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888889998888887778877776 57889999998888888888777666543
No 206
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=94.95 E-value=1.6 Score=44.85 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
....|++.|+|=-......++++.+.+|++.|+...++-+.+.=+|..+++.+.+.
T Consensus 92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~ 147 (403)
T PF03209_consen 92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGR 147 (403)
T ss_pred HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999998888999998887764
No 207
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=94.82 E-value=0.33 Score=48.37 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
-|..+.+..+++.+.|-.+.-++...++....|++.++..+++-....++|..+++.+.+.+.
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 356677889999999999999999999999999988999999999999999999999998654
No 208
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=94.73 E-value=1.1 Score=47.97 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhH
Q 011824 351 YCLIGIAEVFCIVGLLEFLYEEAPDA--MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFD 428 (476)
Q Consensus 351 ~~l~~igEll~~p~~lef~~~~aP~~--~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~ 428 (476)
..+..+|--+..+....++.++-|++ .|+...++++....+|..+++.+...+.... +| .
T Consensus 107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--------Gw----------~ 168 (493)
T PRK15462 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY--------SW----------A 168 (493)
T ss_pred HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh--------Ch----------H
Confidence 34455665566666677888888875 7888899999988899999999887654211 23 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 011824 429 YLYWLLAVLSVINFCAFLYSAYRYK 453 (476)
Q Consensus 429 ~~f~lla~l~~~~~~~~~~~~~~y~ 453 (476)
+-|.+.++.++++.+.++...+++.
T Consensus 169 ~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 169 MGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3455566666666667666555544
No 209
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=94.70 E-value=7.2 Score=41.62 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=68.2
Q ss_pred cchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 011824 26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 105 (476)
Q Consensus 26 ~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~ 105 (476)
..+...+.+...+.+++.++...+...+++|.+.++. |..+-++ +.....|+.+++.+.+|+-. +|++.++
T Consensus 168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~ 238 (521)
T KOG0255|consen 168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW 238 (521)
T ss_pred hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 3567888888999999999999999999999998744 5666667 77778888889988888875 8999999
Q ss_pred HHHHHHHHHHHH
Q 011824 106 ALAIAMGISNML 117 (476)
Q Consensus 106 i~~~~~~i~~i~ 117 (476)
+..+..++.++.
T Consensus 239 ~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 239 IISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHH
Confidence 888776655555
No 210
>PRK09952 shikimate transporter; Provisional
Probab=94.66 E-value=0.64 Score=48.61 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHH
Q 011824 273 ILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYC 352 (476)
Q Consensus 273 ~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~ 352 (476)
..|+-..+.-++..|.+ ..+-+.+++++.+++.+..++...+.. -+ - .+++.++..-+
T Consensus 76 ~~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~---------~-~~~~~l~~~R~ 133 (438)
T PRK09952 76 FRPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSFST-----IG---------W-WAPVLLVTLRA 133 (438)
T ss_pred HHhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcHHH-----HH---------H-HHHHHHHHHHH
Confidence 34554445555666643 223456677777776665554422100 00 0 12223556678
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 353 LIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 353 l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
++|+++-...|....++.+..|++.||..++......++|..++..+..++.
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999877665443
No 211
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=94.61 E-value=0.73 Score=47.20 Aligned_cols=55 Identities=9% Similarity=0.134 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
.+...++.+++.....|...+++.+..+++ +...|......++|..+++.+..++
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l 156 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGIL 156 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhh
Confidence 344567788888888888888877765543 3444555555566666666666544
No 212
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.36 E-value=0.49 Score=49.99 Aligned_cols=156 Identities=13% Similarity=0.079 Sum_probs=89.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
+..+..++.-.+..|++.++- .|.. +..+=+..|.+++.+|-++...++.. + +
T Consensus 75 ~viaa~slg~~i~~liF~~Ws----~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~----------------~-~ 127 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWS----NKTG------SVKKPLIVSFLIAIIGNLLYLALAYV----------------P-N 127 (488)
T ss_pred HHHHHHHHHHHhcchhhcccc----cccC------CcccCHHHHHHHHHHHHHHHHHHHhc----------------c-c
Confidence 445557788888888887753 2211 11122678889999988888666652 1 1
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhhHHHHHHHH--HHHhHHHHHHHHHHHHHhhhccCCCCCCCCCc
Q 011824 341 DLSAYWLLIQYCLIGIA-EVFCIVGLLEFLYEEAPDAMKSIGSAYA--ALAGGLGCFAASILNSIIKSVTGNPKKGQPNW 417 (476)
Q Consensus 341 ~~s~~wlip~~~l~~ig-Ell~~p~~lef~~~~aP~~~kg~~~gl~--~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~ 417 (476)
-+.++++..+++.|+| -.+..--.+.-..+..+.++|+++.... -++..+|..++..+..+-++ +-.|
T Consensus 128 -~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--------G~~i 198 (488)
T KOG2325|consen 128 -GVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK--------GFMI 198 (488)
T ss_pred -chHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--------ceEE
Confidence 2568888999999999 5555555555555566666666655444 44445555555554444321 1224
Q ss_pred cc-ccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824 418 LA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 454 (476)
Q Consensus 418 ~~-~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~ 454 (476)
.+ -.+|.... -=|+.+++.++..++.....+--.+
T Consensus 199 ~~~~~~n~YTa--p~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 199 LPGLIFNMYTA--PAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred cCcceEEecch--HHHHHHHHHHHHHHHHHhheeeccc
Confidence 43 23343222 2244566666666655555444433
No 213
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=94.20 E-value=2.6 Score=43.99 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhH
Q 011824 349 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFD 428 (476)
Q Consensus 349 p~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~ 428 (476)
..-.+++..+.-..|+|.|+.-+..=+...+...|+-.+ .|+..+..+....+...+ ..+.++|. .
T Consensus 364 ~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~---~gq~f~~~~~~~~~~~~~--~~~~~~~~---~------ 429 (480)
T KOG2563|consen 364 TTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNL---SGQIFGVILVFIMGILAE--DLGPPGNT---F------ 429 (480)
T ss_pred hhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEe---ehhHHHHHHHHHHHHHhh--ccCCCCCC---c------
Confidence 334677888888899999999988777777777776442 333333333322222111 01011121 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccCCCccccccccccCC
Q 011824 429 YLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDS 474 (476)
Q Consensus 429 ~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 474 (476)
..-+.++..+++..++-.++...|+|++++...|.+|-.|+-..+.
T Consensus 430 ~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~~~~~~a~~~S~~~~ 475 (480)
T KOG2563|consen 430 PANIFLTVSALLGAILVAFFRPDYRRLRAEAGNFIDEAIEDSETSI 475 (480)
T ss_pred cchhHhHHHHHHHHHHHhhhhhhHHhHhhhhccccccccccCCccc
Confidence 0113345556666666677788888887776556665555544443
No 214
>PRK09528 lacY galactoside permease; Reviewed
Probab=94.15 E-value=0.087 Score=54.59 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
+...++....+.+++.+...+.....+.+.++++. +...+.. +..+.++|.++++.+.+++.+..||+..|.+
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 34455566666777777777777777777776532 3344433 5567889999999999999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 011824 107 LAIAMGISNMLFF 119 (476)
Q Consensus 107 ~~~~~~i~~i~f~ 119 (476)
.++..++..++.+
T Consensus 388 ~~~~~~i~~~~~~ 400 (420)
T PRK09528 388 LGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666554444
No 215
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=93.75 E-value=1.2 Score=45.44 Aligned_cols=59 Identities=14% Similarity=-0.022 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.++++...++.+.+.-...|.....+.+ +++.++...|......++|..+++.+.+...
T Consensus 94 ~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~ 152 (382)
T TIGR00902 94 AWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI 152 (382)
T ss_pred HHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777888877777887776643 3567788889888888888888888776654
No 216
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.75 E-value=1.2 Score=45.49 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
.|.++....+.+++.....|.....+.+..+ .++..+|......++|..+|+.+..+.
T Consensus 94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l 151 (382)
T PRK11128 94 FWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKL 151 (382)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 4444455666788877777766655555432 344444444544556666666666544
No 217
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=93.61 E-value=0.27 Score=52.32 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-~~~~F~i 106 (476)
+.+.|++.-+++++..|...+...++.++..|++. ...+|.+|-..--..+++||++.+.+.+..| .+.+|+.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 45557777778999999999999999999998754 4779999999999999999999999988775 8899988
Q ss_pred HHHHHHHHHHHHH
Q 011824 107 LAIAMGISNMLFF 119 (476)
Q Consensus 107 ~~~~~~i~~i~f~ 119 (476)
-.+.++++++++.
T Consensus 453 l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 453 LLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887774
No 218
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=93.49 E-value=2.9 Score=45.66 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=75.8
Q ss_pred ccccccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011824 248 MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAI 327 (476)
Q Consensus 248 m~~~~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~ 327 (476)
++.++|+- -.-.|+...+.+..-+..|++.++..-+.||. -+.+|.++..++.++.+-.+
T Consensus 70 I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~-------- 129 (599)
T PF06609_consen 70 INADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ-------- 129 (599)
T ss_pred HHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC--------
Confidence 44555532 11246777778877788888888877666653 25667777777776654221
Q ss_pred hcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 328 SHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 328 ~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
+ ++. ++-..++.|+|--..... ...+.+..|.+-|....++.....-+....|+.+...+
T Consensus 130 ------------~-~~~--~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 130 ------------N-MNT--FIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred ------------c-HHH--HHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 1 333 356677777775555544 34478889999998887766665555555666666543
No 219
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=93.20 E-value=0.79 Score=46.80 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--
Q 011824 300 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-- 377 (476)
Q Consensus 300 ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~-- 377 (476)
-+.+|.++..+|.++..+.... ... ... .+...+.....++++|.-++-|....+..+|-+++.
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~-------~~~------~~~-~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP-------PSL------PSG-IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS-------SSC-------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred hhhHHHHHHHHHHHHhHHHHhc-------chh------hhh-HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 3667888888888775544321 000 011 334455667789999999999999999999988773
Q ss_pred -HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 011824 378 -KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 456 (476)
Q Consensus 378 -kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~ 456 (476)
+...-..|+....+|..++..+...+..- -+| ...|++.++.++++.+.|+...++|+.+.
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~--------~~~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~~ 130 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN--------YGW----------FLGFGIPAIGMLLALIVFLSGRKRYRKVA 130 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC--------S-H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S-
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhccc--------cch----------hhhhhHHHHHHHHHHHHHHhCCcCCcCcC
Confidence 33445667888999999988776655421 123 45788888999999999999999988774
Q ss_pred cccC
Q 011824 457 EQKH 460 (476)
Q Consensus 457 ~~~~ 460 (476)
..+.
T Consensus 131 ~~~~ 134 (372)
T PF00854_consen 131 PPGG 134 (372)
T ss_dssp ----
T ss_pred ccCC
Confidence 3333
No 220
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=92.30 E-value=2.4 Score=45.41 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=79.9
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
+++.+...+...+..++..++-..+.||. -+.++.++..++.++.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHh---------------------
Confidence 46666667777777777777665555542 2555656555555554432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHH
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI 398 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~ 398 (476)
.++.+++..-++.|+|=-+.+....-++...+|++.||.+.++..+...+|..++-.
T Consensus 140 --~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~ 196 (513)
T KOG0254|consen 140 --PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYC 196 (513)
T ss_pred --hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999999999999999999999999999988833
No 221
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=92.20 E-value=1.5 Score=46.40 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 011824 350 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 407 (476)
Q Consensus 350 ~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~ 407 (476)
..++.|++--+++.......+++--+.-+|+++|++-.....+..+++.+.+......
T Consensus 394 ~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~ 451 (488)
T KOG2325|consen 394 FIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS 451 (488)
T ss_pred hhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence 4467788888888999999999999999999999999999999999999988766543
No 222
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=92.12 E-value=9.8 Score=38.71 Aligned_cols=87 Identities=13% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCc
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 423 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln 423 (476)
..|.+....+.++......+....+..+..+++.++.+.+.......+|..+|+.+........ +|
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~--------gw------ 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF--------GQ------ 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CH------
Confidence 3455555555666677777777778888888888888888888888888888886655433211 24
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHh
Q 011824 424 TGRFDYLYWLLAVLSVINFCAFLYS 448 (476)
Q Consensus 424 ~~~~~~~f~lla~l~~~~~~~~~~~ 448 (476)
...|++.+++.++..+..+..
T Consensus 163 ----~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 163 ----RPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHc
Confidence 235666777776655554333
No 223
>PRK09669 putative symporter YagG; Provisional
Probab=91.53 E-value=0.59 Score=48.86 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 100 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~-~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~ 100 (476)
+...+++...+.++|.|..-|...++.+|..|.++.+. ++.....|+.+.++.++|..+|+.+.+++-+..||
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45567777788999999999999999999987543211 11234577889999999999999999988766666
No 224
>PRK11462 putative transporter; Provisional
Probab=91.31 E-value=5 Score=42.31 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP-~~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
..|....|++..++-.+....-.+.....++ ++.|+..++.......+|..+++.+..
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~ 167 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM 167 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999999999998 889999999888888888777766653
No 225
>PRK15075 citrate-proton symporter; Provisional
Probab=91.25 E-value=5.4 Score=41.46 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
++..-++.|+++-...+....++.+..|++.|+..++++.....+|..+++.+...+
T Consensus 120 l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 120 VLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568899999988888889999999999999999998877777766666655543
No 226
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=91.01 E-value=14 Score=38.13 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 011824 296 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 375 (476)
Q Consensus 296 s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~ 375 (476)
+..+-|.+|+.+.+++.....=... . -++...+...++++.|=-+.-.++..+++...|+
T Consensus 76 gyk~gi~lgL~l~avg~~lF~pAa~-------------------~-~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~ 135 (422)
T COG0738 76 GYKAGIVLGLLLYAVGAALFWPAAS-------------------S-KSYGFFLVALFILASGIGLLETAANPYVTLLGKP 135 (422)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh-------------------h-hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc
Confidence 3444577888888777654321111 0 2233445567889999999999999999999999
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 376 AMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 376 ~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
+-.+.-+.+--...++|..+++.+++
T Consensus 136 ~~a~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 136 ESAAFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 76666555555555555555555554
No 227
>PTZ00207 hypothetical protein; Provisional
Probab=90.92 E-value=28 Score=38.12 Aligned_cols=77 Identities=8% Similarity=-0.057 Sum_probs=57.9
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchhHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFG 105 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i-~~~l~~~l~~~~g~~~~F~ 105 (476)
.+.+.+++...+.++|.|.+.+.......+.|++ +|..+..+...+.++|+.+ +++...++.+ +|+..|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 3677788888899999999888888889999862 1677999999999999975 6666666653 4666666
Q ss_pred HHHHHHH
Q 011824 106 ALAIAMG 112 (476)
Q Consensus 106 i~~~~~~ 112 (476)
+.++..+
T Consensus 189 ~l~vl~~ 195 (591)
T PTZ00207 189 FLMSFAL 195 (591)
T ss_pred HHHHHHH
Confidence 5555433
No 228
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=90.73 E-value=9.6 Score=34.01 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+.+.++|.-++.|+|+.+.....-.++.+.+.++.++...|+++.....+...|+++.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999888888888877665443
No 229
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=88.78 E-value=6.7 Score=40.53 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=68.1
Q ss_pred CeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcc
Q 011824 254 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF 333 (476)
Q Consensus 254 g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~ 333 (476)
++++.+++...+..+.++...++ .-..-++..|. .+.+-..+++++..+-.+..++...+
T Consensus 43 ~~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~~------------ 102 (417)
T COG2223 43 DFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVTY------------ 102 (417)
T ss_pred ccCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHccC------------
Confidence 34666776666666655554332 33334455553 33334556666667766666555321
Q ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011824 334 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 400 (476)
Q Consensus 334 ~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~ 400 (476)
.|.++++..=++.|++-. .+..++..+.+-=||+.||..+|++- ...+|..+...+.
T Consensus 103 --------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~ 159 (417)
T COG2223 103 --------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA 159 (417)
T ss_pred --------CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence 333444444455555433 34567778888899999999999998 4445544444443
No 230
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=88.53 E-value=8.7 Score=37.15 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 011824 297 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 376 (476)
Q Consensus 297 ~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~ 376 (476)
|..-..+|.++..+++......-.. ..++.+.|.+.....+.+.|..+.....+--..+.-|+
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~----------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~- 127 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSG----------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR- 127 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC----------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-
Confidence 3344667877777777655443221 11113343333444566677777777777777788886
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011824 377 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 453 (476)
Q Consensus 377 ~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~ 453 (476)
.||..+|+--...+++..+=..+...+. ++ +.+.|..+++....+..++.....|...
T Consensus 128 ~RG~vvgilk~~~GLSaai~t~i~~~~f--------------~~-----~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 128 SRGTVVGILKGFFGLSAAIFTQIYSAFF--------------GD-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred ccCceehhhhHHHHhHHHHHHHHHHHHc--------------CC-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 6999999988888888776444433221 11 1234666677766665555555555544
No 231
>PRK10429 melibiose:sodium symporter; Provisional
Probab=87.83 E-value=7.8 Score=40.92 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHhHHHHHHHHHH
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA-PDAMKSIGSAYAALAGGLGCFAASIL 399 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~a-P~~~kg~~~gl~~l~~a~g~~l~~~l 399 (476)
..+|.+..|++..++--+..+.-.+.....+ .++.|....+.-.....+|..+.+.+
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999999 58888888887455555665555443
No 232
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=87.01 E-value=0.00039 Score=72.76 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF 104 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~---~~g~~~~F 104 (476)
+...+.++..+.++|.|+.-+....++.+..+++. |.....++..+.++|.+++.++...+.+ +.+|+..+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 67888999999999999999999999988876533 5666677778888998888766554433 34599998
Q ss_pred HHHHHHHHH
Q 011824 105 GALAIAMGI 113 (476)
Q Consensus 105 ~i~~~~~~i 113 (476)
.++++..++
T Consensus 175 ~~~~~~~l~ 183 (451)
T PF00083_consen 175 IFGAIPSLL 183 (451)
T ss_pred ccccccccc
Confidence 877766543
No 233
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=86.60 E-value=20 Score=38.21 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
.-.++..-++.|+..-+......-|+...||++.||.+-.+.-+...+|..++..++.
T Consensus 116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 116 FEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 4456778899999999999999999999999999999999999999999999876653
No 234
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=86.54 E-value=9 Score=40.28 Aligned_cols=125 Identities=12% Similarity=0.062 Sum_probs=69.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824 295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 374 (476)
Q Consensus 295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP 374 (476)
++...|+..++++..+-+++..+.-.. +. +.. ...+..+...++.+++..+.-.+.+.++...-|
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~~-----------~~---~~~-~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~ 136 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVKV-----------QT---SET-GFFVTTMASVVIINSGMALLQGSLFGLAGVFPS 136 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheeee-----------cC---Ccc-hHHHHHHHHHHHHHhhhhhhcccchhhcccCCH
Confidence 455668888877655555444332110 00 011 233334456677888888888888888886666
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011824 375 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA 449 (476)
Q Consensus 375 ~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~ 449 (476)
+. ++.+....|++..++..+.-+.....+ | +. +..++. ..||.+-+++.++.++.|..+.
T Consensus 137 ~~-----~~a~~~G~g~aGv~~s~~~ii~~a~~~-----~-~~---~~~~~a-~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 137 TY-----SSAVMSGQGLAGVLTSLAMILVKASGN-----D-SH---GLKKSA-LGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred HH-----HHHHHhcchhHHHHHHHHHHHHHHhcC-----C-cc---chhhhh-hhHHHHHHHHHHHHHHHHHHHh
Confidence 44 444555566666666655433332111 1 00 122222 2366667777777787777664
No 235
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=86.41 E-value=12 Score=39.33 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 349 IQYCLIGIAEVFCIVGLLEFLYEE---APDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 349 p~~~l~~igEll~~p~~lef~~~~---aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
...++.++|.++..+..-..+.+. -|++ +|-.++..+....+|+.++..+++...
T Consensus 91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~ 148 (433)
T PF03092_consen 91 VLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLL 148 (433)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344556666666666655555444 3555 888899988889999999888876543
No 236
>PRK09848 glucuronide transporter; Provisional
Probab=86.25 E-value=3.2 Score=43.33 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG----- 101 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~-~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~----- 101 (476)
+.+.+++++.+.++|.|...+...++.+|..|.++-+. +++...+++.+-++.++|..+|+.+.+.+-+..||.
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~ 397 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ 397 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 45566777888999999999999999999887543210 122466678899999999999999888775555542
Q ss_pred ---------HHH-HHHHHHHHHHHHHH
Q 011824 102 ---------SAF-GALAIAMGISNMLF 118 (476)
Q Consensus 102 ---------~~F-~i~~~~~~i~~i~f 118 (476)
..+ .+|+++++++++++
T Consensus 398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~ 424 (448)
T PRK09848 398 TPEVIMGIRTSIALVPCGFMLLAFVII 424 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 45666666666554
No 237
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=86.07 E-value=6.1 Score=40.54 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=69.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcch
Q 011824 263 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 342 (476)
Q Consensus 263 ~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (476)
.+.-.+.-.+..|+...+-..+.|| | -+.+|.+..+++.+..+.....
T Consensus 74 GSsF~ilQ~~sS~~~G~~SD~yGRk-------p----vll~c~~~va~s~ll~~~S~~F--------------------- 121 (451)
T KOG2615|consen 74 GSSFSILQFISSPLWGCLSDRYGRK-------P----VLLACLIGVALSYLLWALSRNF--------------------- 121 (451)
T ss_pred hhHHHHHHHHhhhhhhhhhhhhCch-------H----HHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 3334455556667666654444333 2 3667777777776665443221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 405 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~ 405 (476)
..++..-++.|+..-.++++ -+.+.+.++++.|++.|+....+.++|..+|+++++....
T Consensus 122 --~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 122 --AAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 12223344445544444432 4677888999999999999999999999999999887654
No 238
>PF13347 MFS_2: MFS/sugar transport protein
Probab=85.48 E-value=5.7 Score=41.18 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCC---CCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824 268 LSIFLILSLYYSTFVPLCRRITGH---PRG-ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 343 (476)
Q Consensus 268 ~~ill~~pl~~~~~~p~~~~~~~~---~~~-~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s 343 (476)
-.+++..++.|.+..|+.-....+ +.| .+| -+.+|.++.+++++......- ++. ... ..
T Consensus 40 g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp--~~l~g~i~~~~~~~llf~~~p--------~~~------~~~-~~ 102 (428)
T PF13347_consen 40 GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRP--WILIGAILLALSFFLLFSPPP--------AGL------SFT-AK 102 (428)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEeeecccccccce--EeehhhHHHHHHHHHhhcccc--------chh------hhh-hH
Confidence 345566677777777754322110 000 122 356788888887776653310 000 011 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP-~~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
..|+...|++..++--+....-.+...+.+| ++.|....+.-.+...+|..+.+.+..
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~ 161 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP 161 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888999999999999999999999998 468888888887878888866555544
No 239
>PHA03049 IMV membrane protein; Provisional
Probab=84.89 E-value=1.5 Score=32.52 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCCCccccccc-cc
Q 011824 431 YWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMEN-KL 471 (476)
Q Consensus 431 f~lla~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~ 471 (476)
..+.-.++++.+++|.+..|+-...+.....+.+|++|| |+
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e~~kT 47 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKMEDLKT 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCChhhccCchhhhh
Confidence 344455666777888887777666666666788899998 54
No 240
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=84.71 E-value=16 Score=37.92 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824 295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 374 (476)
Q Consensus 295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP 374 (476)
.+-..|+.+..+++++|+++.++.+ ++++-+...++.+++--+.-.+-+.+....-+
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~-----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~ 142 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSP-----------------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFYGK 142 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeecc-----------------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhcCc
Confidence 3456789999999999998765432 22333445566655555555556666554432
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 375 DAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 375 ~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
..++.|...+|.+..+|+.......
T Consensus 143 -----~~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 143 -----SSLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred -----cccccccCCcChhhHHHHHHHHHHH
Confidence 3578899999999999887765443
No 241
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=84.47 E-value=3.3 Score=43.00 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhccc------hhHHHH
Q 011824 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT-VGAIVAFTLVVYIQMEHG------WGSAFG 105 (476)
Q Consensus 33 ~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iN-iGa~i~~~l~~~l~~~~g------~~~~F~ 105 (476)
.++..+-++..|.+-.....++.+..|++. |.++=.+|....+ +|..+|.+++|++-|++| |...|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 334445788888888888899998887644 4445555555443 899999999999988765 445667
Q ss_pred HHHHHHHHHHHHHHhh
Q 011824 106 ALAIAMGISNMLFFIG 121 (476)
Q Consensus 106 i~~~~~~i~~i~f~~~ 121 (476)
++++..++..++|++.
T Consensus 379 v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 379 VFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7777777777777664
No 242
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=84.30 E-value=39 Score=35.86 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHH
Q 011824 267 GLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW 346 (476)
Q Consensus 267 ~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~w 346 (476)
.+..++..|++..+..++.|| .++..-.+|.++-.+.+++. .||
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~~----------------------------~~~ 115 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLFQ----------------------------GYW 115 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHHH----------------------------HHH
Confidence 557777888888887777665 24444444555444433332 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+. ..=..-+-..+...+++++++.+.++.|+...|+...+.+.+..+++.+.+...
T Consensus 116 ~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~ 172 (463)
T KOG2816|consen 116 FFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV 172 (463)
T ss_pred Hhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 332 111122334566778889999999999999999999988888888887776543
No 243
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=84.02 E-value=0.62 Score=49.96 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHH
Q 011824 30 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALA 108 (476)
Q Consensus 30 ~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-~~~~F~i~~ 108 (476)
..+..--+++++..|.+-.+....+.|..+.++ ..++|.+.....-+++++||.+++++.+..| |...|..++
T Consensus 389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g 462 (509)
T KOG2504|consen 389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCG 462 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcC
Confidence 334444445666677776666667777777643 7889999999999999999999999988877 999999999
Q ss_pred HHHHHHHHHHHhhc
Q 011824 109 IAMGISNMLFFIGT 122 (476)
Q Consensus 109 ~~~~i~~i~f~~~~ 122 (476)
+.++++.+..+.-+
T Consensus 463 ~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 463 LCFLLSAVLLLILR 476 (509)
T ss_pred hHHHHHHHHHHHhH
Confidence 99999987766544
No 244
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=83.99 E-value=7.8 Score=40.93 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccc
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 420 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP-~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 420 (476)
.+..|....|.+++++--++...--+......+ ++.|....+..+....+|+.+...+...+...-+ ++|
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g---~~~------ 180 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG---GGD------ 180 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCc------
Confidence 456777888999999999998888888887755 4667788899999999998887777654443221 000
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011824 421 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 457 (476)
Q Consensus 421 ~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~ 457 (476)
+...|.....+++++..+.++++.+..|.|..
T Consensus 181 -----~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 181 -----KALGYQGTALVLGVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 11236666777888888888888888775544
No 245
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=83.81 E-value=0.28 Score=52.97 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=2.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------- 96 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~----------- 96 (476)
-...|++|-++.++|..-+-+--.+++=|..++++ ..-+..++|.+..+|..+|.++++..-+
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 46788888888888887776665555555544322 4667888999999999999888775421
Q ss_pred ----------cc-chhHHHHHHHHHHHHHHHHHHhhcccee
Q 011824 97 ----------EH-GWGSAFGALAIAMGISNMLFFIGTPLYR 126 (476)
Q Consensus 97 ----------~~-g~~~~F~i~~~~~~i~~i~f~~~~~~~~ 126 (476)
-+ .||++|+++++..++..+-++..-|.++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 02 3999999999988777766665444443
No 246
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=83.50 E-value=13 Score=39.58 Aligned_cols=86 Identities=13% Similarity=0.187 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCccccc
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 421 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (476)
-+.++.+..-++.|++..-....+...+.+..+++.|+..+.+ ......+..++..+...+.. +|
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~----------~W---- 233 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR----------DW---- 233 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh----------hH----
Confidence 3456667778999999999999999999999999999999999 55555555555555554331 36
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHh
Q 011824 422 INTGRFDYLYWLLAVLSVINFCAFLYS 448 (476)
Q Consensus 422 ln~~~~~~~f~lla~l~~~~~~~~~~~ 448 (476)
-+.++..++.+++.++++++.
T Consensus 234 ------r~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 234 ------RWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred ------HHHHHHHHHHHHHHHHHHHcc
Confidence 246666666666666654444
No 247
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=79.26 E-value=3.6 Score=40.56 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHH
Q 011824 33 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAI 109 (476)
Q Consensus 33 ~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g---~~~~F~i~~~ 109 (476)
|+++.++++...+.....-+.++...+++ |...+|..-|-.-|+|-.+.+++++.+.++.| |--+|.+...
T Consensus 356 y~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 356 YTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 56777777777776666777888777763 38899999999999999999999999987654 5555655555
Q ss_pred HHHHHH
Q 011824 110 AMGISN 115 (476)
Q Consensus 110 ~~~i~~ 115 (476)
.|.+-.
T Consensus 430 ~~aL~s 435 (459)
T KOG4686|consen 430 LMALTS 435 (459)
T ss_pred HHHHHH
Confidence 554433
No 248
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=73.03 E-value=61 Score=30.15 Aligned_cols=99 Identities=18% Similarity=0.061 Sum_probs=57.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchh
Q 011824 264 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS 343 (476)
Q Consensus 264 ~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s 343 (476)
-.|.+.+.+..++..+..++..+|+ .+..++..+++...++....++............+ + .+.. ..
T Consensus 106 G~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~--~---~~~~-~~ 172 (205)
T PF01891_consen 106 GANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG--D---YPWM-AL 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--c---ccHH-HH
Confidence 3566666666666666666666553 12334555555455555544433322211111100 0 0111 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 375 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~ 375 (476)
.....+.+.++++.|-+++-....+..+.-|+
T Consensus 173 ~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 173 VQAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44567888999999999999999999998885
No 249
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=70.98 E-value=24 Score=36.44 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHH-HHHHHHHHHHHhhhcc
Q 011824 346 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GCFAASILNSIIKSVT 407 (476)
Q Consensus 346 wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~-g~~l~~~l~~~~~~~~ 407 (476)
..+.+|.+.+.----.+.+++.|.++.||++..|++|.+..-...+ |+..+-+...+.+..+
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 3455788888888889999999999999999999999886644444 4444544445554433
No 250
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.32 E-value=37 Score=28.15 Aligned_cols=31 Identities=6% Similarity=0.057 Sum_probs=21.1
Q ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 373 APDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 373 aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
+-++.|+..+++-..+-.++..+-|++.+++
T Consensus 35 ~a~s~k~~~~a~klssefIsGilVGa~iG~l 65 (116)
T COG5336 35 SAESIKGYAQAFKLSSEFISGILVGAGIGWL 65 (116)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888877777777766666655543
No 251
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=68.23 E-value=20 Score=36.48 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=66.8
Q ss_pred CCCccCccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 011824 19 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME 97 (476)
Q Consensus 19 ~~c~~~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY-~~iNiGa~i~~~l~~~l~~~ 97 (476)
.+|......+...+++|-++-++++.+....--+-...+..+++-++ +.+..-|..-- +...+-++++..++-++.+.
T Consensus 111 ~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 111 LSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 46766666789999999999999999988777765555554433221 22444444333 22234455555566566665
Q ss_pred cch--hHHHHHHHHHHHHHHHHHHhhc
Q 011824 98 HGW--GSAFGALAIAMGISNMLFFIGT 122 (476)
Q Consensus 98 ~g~--~~~F~i~~~~~~i~~i~f~~~~ 122 (476)
.|. ...|..+.+..+++.++.....
T Consensus 190 ~~~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 190 FGFGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred hCCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 554 7889999888888877665443
No 252
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=67.01 E-value=13 Score=39.16 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=95.9
Q ss_pred eecCCcccchhhHHH---HHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCc
Q 011824 256 KLPVTCMPVFPGLSI---FLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE 332 (476)
Q Consensus 256 ~ip~~~~~~in~~~i---ll~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~ 332 (476)
++|+...+.+|...- ++.+.++.++=..+.||. -++.-++++.+|-+..+... +
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~-----------vYG~~liImIi~t~~~~~s~----------~-- 136 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK-----------VYGKELIIMIICSALSGLSV----------G-- 136 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-----------hhhHHHHHHHHHHHHhccCC----------C--
Confidence 478877777776543 355555555544443332 24444555555544222111 1
Q ss_pred ccccCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCC
Q 011824 333 FSFLTAMPDLS-AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK 411 (476)
Q Consensus 333 ~~~~~~~~~~s-~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~ 411 (476)
.+.+ .+ .+|+...-+++|+|=-==+|.+-...+..|-++-||..++..+..++.|-+.|+.+..++...-++
T Consensus 137 ----~~~~-~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~-- 209 (538)
T KOG0252|consen 137 ----TTSP-LGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEK-- 209 (538)
T ss_pred ----CCCC-cchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhc--
Confidence 0112 22 456677778889887777888888899999999999999999999999998888777655432221
Q ss_pred CCCCCcccccCcC----chhHHHHHHHHHHHHHHHHHHHHhh
Q 011824 412 KGQPNWLAQNINT----GRFDYLYWLLAVLSVINFCAFLYSA 449 (476)
Q Consensus 412 ~~~~~~~~~~ln~----~~~~~~f~lla~l~~~~~~~~~~~~ 449 (476)
.+|+ -++|+.|=+.-+++++-.+.-+..+
T Consensus 210 ---------~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R 242 (538)
T KOG0252|consen 210 ---------IFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR 242 (538)
T ss_pred ---------cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222 2678888776666665554443333
No 253
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=64.41 E-value=1.1e+02 Score=30.90 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhcCCcccccCCC
Q 011824 265 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY-----AISHGYEFSFLTAM 339 (476)
Q Consensus 265 in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~ 339 (476)
.|.+.+-+..++..+.+++..+|+. ++....+..+++-..++....++........ ..+.|... ..+.
T Consensus 108 aN~l~ma~~~~~v~y~iyr~~~~~~-----~~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~~~--~~~~ 180 (322)
T PRK07331 108 ANCFNMAFIMPFVGYYIYKFIKKWT-----KSKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGLPL--YSPY 180 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCccc--cccc
Confidence 3555444445666677777666532 2333344444455555555444332211100 00111000 0011
Q ss_pred c-chhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhh
Q 011824 340 P-DLSAYWLLIQYCLI-GIAEVFCIVGLLEFLYEEAPDAM 377 (476)
Q Consensus 340 ~-~~s~~wlip~~~l~-~igEll~~p~~lef~~~~aP~~~ 377 (476)
+ +.+..-+.+..+.+ ++.|-++......|+.+..|+-+
T Consensus 181 ~~~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 181 PLSVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 1 02333356667776 99999999999999999998875
No 254
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=61.76 E-value=1.5e+02 Score=29.25 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=52.8
Q ss_pred CCccCccchhHHHHHHHHHHHHhccCCcccchh-hhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 011824 20 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQME 97 (476)
Q Consensus 20 ~c~~~~~~~~~~~~~gL~li~~G~G~~kpni~a-~~~dq~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~l~~~l~~~ 97 (476)
+|.+....|.-.+.+|.++=++.+.+..+.--+ ++++.-+.++-.++ -...-|+- -++...+=++++.+.+-++.+.
T Consensus 115 sCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Feqq-Wls~TFskA~ffgNglvAiiaGlfgn~lvd~ 193 (454)
T KOG4332|consen 115 SCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQ-WLSVTFSKAVFFGNGLVAIIAGLFGNLLVDT 193 (454)
T ss_pred HHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHh-hhhHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 466666677777888888877777764433332 33444333221111 11111211 1122223344444444444443
Q ss_pred --cchhHHHHHHHHHHHHHHHHHHhhc
Q 011824 98 --HGWGSAFGALAIAMGISNMLFFIGT 122 (476)
Q Consensus 98 --~g~~~~F~i~~~~~~i~~i~f~~~~ 122 (476)
.|--..|-.++....++..+.+..+
T Consensus 194 ~slGPVAPFdAAacfLaigmAvil~~W 220 (454)
T KOG4332|consen 194 FSLGPVAPFDAAACFLAIGMAVILSSW 220 (454)
T ss_pred hccCCCCchHHHHHHHHHHHHHHHhhh
Confidence 4667788877777777777666443
No 255
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=59.01 E-value=33 Score=36.39 Aligned_cols=124 Identities=16% Similarity=0.122 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 011824 298 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 377 (476)
Q Consensus 298 l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~ 377 (476)
.+-+.+|-++.+++-++++..+. .+...+....+++++|--++-|....+..++=|+.-
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~~---------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D 150 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISSV---------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD 150 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc---------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence 34588999999998888765430 112334555677778888888877777777755433
Q ss_pred --HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011824 378 --KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 455 (476)
Q Consensus 378 --kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~ 455 (476)
|-...+++|....+|+++++.+..++.. | .+ ...-|.+.++-+.+.++.|+...|+++-.
T Consensus 151 prrD~gFt~fY~~iNiGsl~~p~i~~~~~~-----------~----~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 151 PRRDGGFTLFYMGINIGSLIAPIITGLLAI-----------N----YG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred cccCCCccEEEEEeehHHHHHHHHHHHHHH-----------h----hC---HHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 3345677888888999999998876542 1 11 23467788888889999999999888766
Q ss_pred ccccC
Q 011824 456 SEQKH 460 (476)
Q Consensus 456 ~~~~~ 460 (476)
...++
T Consensus 213 ~~~~~ 217 (498)
T COG3104 213 GGVPD 217 (498)
T ss_pred CCCCC
Confidence 43333
No 256
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=57.82 E-value=27 Score=36.88 Aligned_cols=65 Identities=14% Similarity=-0.058 Sum_probs=46.7
Q ss_pred HHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-----hhHHHHH
Q 011824 36 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-----WGSAFGA 106 (476)
Q Consensus 36 L~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-----~~~~F~i 106 (476)
..+..++.|..-.....+..+..+++. ....|.++....|+|..+++.+++++.+..| |+.-|..
T Consensus 358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~ 427 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL 427 (468)
T ss_pred hHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH
Confidence 344455555555555666666666543 5789999999999999999999999988877 6555543
No 257
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=57.47 E-value=59 Score=34.33 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=95.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCC
Q 011824 215 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRG 294 (476)
Q Consensus 215 k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~ 294 (476)
+++++...+.+..-+.|..-.+..|-+.++ .-.+... .+.+....|++=++.+|+......+...|.+++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR--- 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR--- 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCccc------ccccccccccccceecccccccccccccccccc---
Confidence 344555555555666676655544444322 1222211 123556678888999999999888877777554
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c
Q 011824 295 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE-A 373 (476)
Q Consensus 295 ~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~-a 373 (476)
+| =|..|-++.++++...+.....-.... |++..+.+...+...+..+.++-++-=++.-..=++..+. +
T Consensus 102 -RP--fI~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~ 172 (498)
T KOG0637|consen 102 -RP--FILAGSLLIAVSLFLIGYAADIGLLLG------DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLAR 172 (498)
T ss_pred -cc--hHHHhhHHHHHHHhhhhhHhhhhHHhc------CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc
Confidence 23 367777777777776554443211111 2211111213444445556666666644444444555555 4
Q ss_pred chhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 374 PDAMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 374 P~~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
|...+-...+.+-+..++|+.+|-.+..
T Consensus 173 ~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 173 GDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred ChhhhhccchhHHHHHHhcceeeeeccc
Confidence 4444444888888999999999766553
No 258
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=57.03 E-value=18 Score=37.57 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHH
Q 011824 32 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIA 110 (476)
Q Consensus 32 ~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~-g~~~~F~i~~~~ 110 (476)
+++.-.++++..|+..+...+..++..++++ -.++|.+|-..--.++++||.+.+.+-+.. +-+.++..-.+.
T Consensus 344 f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl 417 (438)
T COG2270 344 FWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL 417 (438)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4444467899999999999999999998765 467999999999999999999988776543 456777766677
Q ss_pred HHHHHHHHH
Q 011824 111 MGISNMLFF 119 (476)
Q Consensus 111 ~~i~~i~f~ 119 (476)
+.+++++++
T Consensus 418 l~iGl~~L~ 426 (438)
T COG2270 418 LLIGLLLLL 426 (438)
T ss_pred HHhhHhhEE
Confidence 777776654
No 259
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=56.65 E-value=1.6e+02 Score=31.41 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011824 69 LDRFFNFFYLSVTVGAIVAFTLVVYIQM 96 (476)
Q Consensus 69 ~~~~F~~fY~~iNiGa~i~~~l~~~l~~ 96 (476)
..++|..+..+.|+|.++|..++.++.+
T Consensus 178 AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 178 AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999888876
No 260
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=54.04 E-value=44 Score=31.01 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhc--cchhHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQME--HGWGSAF 104 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~-~iNiGa~i~~~l~~~l~~~--~g~~~~F 104 (476)
....+.+...+.+++.|...|...+...+.+++ . ..+...+.++.. ..++|.++++.+.+.+... .+|+..|
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAF 167 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 345555566667888889999999999999886 2 225667777777 5778888888776666543 5777766
Q ss_pred HHHHHHH
Q 011824 105 GALAIAM 111 (476)
Q Consensus 105 ~i~~~~~ 111 (476)
.+.....
T Consensus 168 ~~~~~~~ 174 (338)
T COG0477 168 LLAALLG 174 (338)
T ss_pred HHHHHHH
Confidence 5555443
No 261
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=51.53 E-value=44 Score=35.40 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=49.5
Q ss_pred chhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 011824 50 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 116 (476)
Q Consensus 50 i~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i 116 (476)
+..+.+..|-..+...-+..+..=+.-+.+-|+|.++|.+.-|+++|.+|-.-+++.+.+.|+++.+
T Consensus 63 Vt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 63 VTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA 129 (538)
T ss_pred HHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 4556666665544211111233334567789999999999999999999999999999999999887
No 262
>PF14007 YtpI: YtpI-like protein
Probab=51.43 E-value=61 Score=26.01 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhccceeecCC
Q 011824 78 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 130 (476)
Q Consensus 78 ~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~~~~~~~~~~~p 130 (476)
+.+.+|.++.....-..-- .+-...+.++++.+++|+...+.|.|.|+|-.|
T Consensus 35 a~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 35 ANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 3566777776544332222 334688899999999999999999998887654
No 263
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=51.08 E-value=73 Score=33.22 Aligned_cols=28 Identities=14% Similarity=-0.059 Sum_probs=22.6
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhhhhh
Q 011824 260 TCMPVFPGLSIFLILSLYYSTFVPLCRR 287 (476)
Q Consensus 260 ~~~~~in~~~ill~~pl~~~~~~p~~~~ 287 (476)
+.+.+.|+++-+++.|++..+..++..|
T Consensus 46 G~i~s~~~~~~l~~qp~~G~i~Dklg~k 73 (412)
T PF01306_consen 46 GIIFSAGSLFALLAQPVYGFISDKLGLK 73 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence 4577889999999999998887776544
No 264
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=50.04 E-value=65 Score=24.94 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhccceee
Q 011824 71 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 127 (476)
Q Consensus 71 ~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~~~~~~~~~ 127 (476)
.+-.++...+-+++++|. +.||+.++ .+..+.+-+++.++++++.+=..+.|++
T Consensus 8 ~ae~l~~~il~~~~iisf-i~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~r 61 (76)
T PF06645_consen 8 LAEKLMQYILIISAIISF-IVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYNR 61 (76)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhcC
Confidence 344577778888888875 56777654 4678888888888888887766666654
No 265
>PRK11715 inner membrane protein; Provisional
Probab=49.89 E-value=3.3e+02 Score=28.63 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q 011824 301 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF-----------L 369 (476)
Q Consensus 301 i~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef-----------~ 369 (476)
+=-|+++.++.|+...+.|.... .+ +++. ||++.|++-++.+--.+++ +
T Consensus 304 ~KYgiLFI~LTF~~fFlfE~~~~---------------~~-iHpi----QYlLVGlAl~lFYLLLLSlSEHigF~~AYli 363 (436)
T PRK11715 304 VKYAILFIALTFAAFFLFELLKK---------------LR-IHPV----QYLLVGLALVLFYLLLLSLSEHIGFTLAYLI 363 (436)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcC---------------ce-ecHH----HHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Confidence 33688889999999999997421 12 4443 7777777777766665554 2
Q ss_pred HhhcchhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 011824 370 YEEAPDAMKSIGSAYAALAGGLGCFAASILNS 401 (476)
Q Consensus 370 ~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~ 401 (476)
.+.|...+-|.+.+..+=..--|..+++.+..
T Consensus 364 Aa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~ 395 (436)
T PRK11715 364 AALACVLLIGFYLSAVLRSWKRGLLFAAALAA 395 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33444445555444444333344444444433
No 266
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=47.56 E-value=3.8e+02 Score=28.65 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHH----HHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824 352 CLIGIAEVFCIVG----LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 405 (476)
Q Consensus 352 ~l~~igEll~~p~----~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~ 405 (476)
++--++|+.-+.. --.|+.+..+.+.-...-++..+...+|..+||.+...+..
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677776553 45788888888888899999999999999999999887765
No 267
>PRK08319 cobalt transport protein CbiM; Validated
Probab=47.21 E-value=2.5e+02 Score=26.51 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824 348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378 (476)
Q Consensus 348 ip~~~l~~igEll~~p~~lef~~~~aP~~~k 378 (476)
.++++.++++|-++.-....+..+.-|+=.+
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~ 213 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLV 213 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHh
Confidence 4566789999999999999999999998765
No 268
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=45.90 E-value=3.8e+02 Score=28.15 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011824 303 IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF 368 (476)
Q Consensus 303 iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef 368 (476)
-|+++.++.|+...+.|...+ .+ +++. ||++.|++-++.+-..+++
T Consensus 300 YgiLFI~LTF~~fflfE~~~~---------------~~-iHpi----QY~LVGlAl~lFYlLLLSl 345 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSK---------------LR-IHPI----QYLLVGLALVLFYLLLLSL 345 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------Cc-ccHH----HHHHHHHHHHHHHHHHHHH
Confidence 577888899999999997532 12 4442 7777777766666555554
No 269
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=42.28 E-value=49 Score=24.86 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCCcccccc
Q 011824 432 WLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVME 468 (476)
Q Consensus 432 ~lla~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 468 (476)
.+.-.++++++++|.+..|+-...+..+..+.+|..|
T Consensus 7 Li~ICVaii~lIlY~iYnr~~~~q~~~~~~e~y~~~~ 43 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKKTTQNTNPSTENYEKME 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCchhhcCCcc
Confidence 3334455566677777666655544444434444444
No 270
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=41.19 E-value=3.1e+02 Score=25.77 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 011824 346 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 377 (476)
Q Consensus 346 wlip~~~l~~igEll~~p~~lef~~~~aP~~~ 377 (476)
...+.++.+++.|-.+......++.+..|+-.
T Consensus 181 ~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 181 IFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 34456678899999999999999999999754
No 271
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=40.83 E-value=3.6 Score=42.78 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=56.3
Q ss_pred CCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhccc
Q 011824 45 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 124 (476)
Q Consensus 45 ~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~~~~~~ 124 (476)
+.-|....+.++.|+.+. |..+..+-+...++|+++++.+.+++.++.+-...|.+-++.++++.++.+. .
T Consensus 365 g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~---~ 435 (451)
T PF00083_consen 365 GWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF---F 435 (451)
T ss_pred cccccccccccccccccc------cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE---E
Confidence 445667778899998644 7888889999999999999999888887776455666655555555443322 2
Q ss_pred eeecCCCCChhhHH
Q 011824 125 YRHRLPGGSPLTRV 138 (476)
Q Consensus 125 ~~~~~p~~~pl~~~ 138 (476)
++ +..+.++.++
T Consensus 436 lp--ET~g~~l~ei 447 (451)
T PF00083_consen 436 LP--ETKGKTLEEI 447 (451)
T ss_pred Ee--eCCCCCHHHH
Confidence 32 3445555543
No 272
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=40.06 E-value=4.5e+02 Score=27.35 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchh
Q 011824 348 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRF 427 (476)
Q Consensus 348 ip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~ 427 (476)
+...++.+++.....-..+-.+...-|+-.++++.| .++++.+..++.-......+ |-+++-
T Consensus 121 ~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G-----~a~aG~l~Sl~~i~tka~~~------------~~~~sA- 182 (406)
T KOG1479|consen 121 LIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG-----QALAGTLTSLLRILTKAAFS------------DSRTSA- 182 (406)
T ss_pred HHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc-----chhHhHHHHHHHHHHHHhcC------------CCCcee-
Confidence 345577777777777777777777666666666554 34444444443333332221 111121
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011824 428 DYLYWLLAVLSVINFCAFLYS 448 (476)
Q Consensus 428 ~~~f~lla~l~~~~~~~~~~~ 448 (476)
..||.+-.++.++..+.|.+.
T Consensus 183 ~~yF~~s~~~~llC~i~y~~l 203 (406)
T KOG1479|consen 183 LIYFITSTVILLLCFVLYLVL 203 (406)
T ss_pred ehhHHHHHHHHHHHHHHHHHh
Confidence 236666666777777777743
No 273
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=39.73 E-value=4.7e+02 Score=27.46 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 402 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~ 402 (476)
++..-++...++-=+|=-....+....+=+..|++.||...|.-.....+-..+.-.++..
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555455555555555555555566666678999999999999998888888887666543
No 274
>PF15050 SCIMP: SCIMP protein
Probab=39.72 E-value=18 Score=30.39 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHhhccc
Q 011824 428 DYLYWLLAVLSV-----INFCAFLYSAYRY 452 (476)
Q Consensus 428 ~~~f~lla~l~~-----~~~~~~~~~~~~y 452 (476)
++||.++|+..+ +++++|-++++.+
T Consensus 6 ~nFWiiLAVaII~vS~~lglIlyCvcR~~l 35 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVVLGLILYCVCRWQL 35 (133)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777765332 3334444444444
No 275
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.09 E-value=43 Score=28.57 Aligned_cols=26 Identities=12% Similarity=-0.067 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 011824 430 LYWLLAVLSVINFCAFLYSAYRYKYR 455 (476)
Q Consensus 430 ~f~lla~l~~~~~~~~~~~~~~y~~~ 455 (476)
.|.++|++.++.+++++++.|+.|+.
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44555554444444444444444443
No 276
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=34.86 E-value=4.1e+02 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhh
Q 011824 343 SAYWLLIQYCLI-GIAEVFCIVGLLEFLYEEAPDAM 377 (476)
Q Consensus 343 s~~wlip~~~l~-~igEll~~p~~lef~~~~aP~~~ 377 (476)
+..-+++..+.+ ++.|-++......++.+..|+.+
T Consensus 182 ~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~ 217 (230)
T PRK11909 182 SIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENL 217 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 344566777887 99999999999999999966655
No 277
>PRK06265 cobalt transport protein CbiM; Validated
Probab=34.34 E-value=3.8e+02 Score=24.77 Aligned_cols=95 Identities=19% Similarity=0.125 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcchhH
Q 011824 265 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSA 344 (476)
Q Consensus 265 in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~ 344 (476)
.|.+...+-.++-..+.++..||. + ..+...|++-..++....++...-....+.. .+ ...
T Consensus 102 ~N~l~m~~p~~~~~~~~~~~~~~~------~--~~~~~~~f~~~~l~v~~~~l~~~~~l~l~~~----------~~-~~~ 162 (199)
T PRK06265 102 VNTLNMALPAVLAGYLFRKLLRRT------P--PPRGLAAFLAGALAVFLAALLCALELALSGG----------FP-FVP 162 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHccc----------cc-HHH
Confidence 344444433444444455544432 2 2455667777777766555443321111100 01 122
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 011824 345 YW--LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 378 (476)
Q Consensus 345 ~w--lip~~~l~~igEll~~p~~lef~~~~aP~~~k 378 (476)
.+ +++.++.+++.|-++.-....+..+.-|+-.+
T Consensus 163 ~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~~l~ 198 (199)
T PRK06265 163 AAKLLGLAHLPLMVIEGIITAFAVSFLARVRPELLK 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcc
Confidence 22 22445667777999999999999999987553
No 278
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.07 E-value=1.4e+02 Score=24.06 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhhccceee
Q 011824 75 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 127 (476)
Q Consensus 75 ~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~~~~i~~i~f~~~~~~~~~ 127 (476)
++-..+.+|+++|.+. |+.++..+|. . .+-+++.++.+++-+=-.++|++
T Consensus 27 ~~q~ilti~aiVg~i~-Gf~~Qqls~t-v-y~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 27 FQQLILTIGAIVGFIY-GFAQQQLSVT-V-YIVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHH-H-HHHHHHHHHHHHhcCCCchhhhc
Confidence 6667899999998654 6666667653 2 33344445555555555566653
No 279
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=31.56 E-value=17 Score=27.13 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=1.9
Q ss_pred CCccccccccc
Q 011824 461 GNDYEVMENKL 471 (476)
Q Consensus 461 ~~~~~~~~~~~ 471 (476)
+-+|.++|.|.
T Consensus 41 EGSY~l~e~K~ 51 (64)
T PF01034_consen 41 EGSYDLDEPKP 51 (64)
T ss_dssp ---SS--S---
T ss_pred CCCccCCCCCc
Confidence 34566667665
No 280
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=30.63 E-value=6.8e+02 Score=26.61 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=31.8
Q ss_pred hhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011824 52 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 95 (476)
Q Consensus 52 a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~ 95 (476)
++..|.++.++ -.|+|..+..+.|+|.++|+.++.++.
T Consensus 152 ~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 152 GFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778877533 678999999999999999999988876
No 281
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=29.24 E-value=7.2e+02 Score=26.44 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=40.6
Q ss_pred HHHHHHHH----HHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824 356 IAEVFCIV----GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 405 (476)
Q Consensus 356 igEll~~p----~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~ 405 (476)
.+|++-+. .--+|+.+....+.-...-++..+...+|..+||.+...+..
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665544 445889999888888899999999999999999988877653
No 282
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=27.84 E-value=58 Score=32.11 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=58.6
Q ss_pred ccCccchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 011824 22 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 101 (476)
Q Consensus 22 ~~~~~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~ 101 (476)
..|+..+...-++|..++-...|.+.|.+.-+= .||-+++. |+...|||-.-.|+=.-++....--=....+-+
T Consensus 337 vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmR-sqyIPEea-----rstimNfFRvPLnifvClvLynlh~~~~p~~tr 410 (454)
T KOG4332|consen 337 VSPSKESPSESLIGFCLFEACVGLFWPSIMKMR-SQYIPEEA-----RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTR 410 (454)
T ss_pred cCCCcCCchHHHHHHHHHHHHHhhcchHHHHHH-HhhCCHHH-----HhhhhhheechhhHhhhhhheecccccCccccc
Confidence 344445555567888888889999999987655 46655442 788999998888765543321100001123556
Q ss_pred HHHHHHHHHHHHHHHH
Q 011824 102 SAFGALAIAMGISNML 117 (476)
Q Consensus 102 ~~F~i~~~~~~i~~i~ 117 (476)
..|.+|.+.+.++.+.
T Consensus 411 ~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 411 NMFGICSAFLFVASIL 426 (454)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 8899999988877543
No 283
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=26.42 E-value=7.5e+02 Score=25.72 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
++|..+...+.-|+-.-..++-....+.++.|++.|-+.||.-..+.++|..+++.++-.++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44544456677788888889999999999999999999999999999999999999876544
No 284
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.84 E-value=1.5e+02 Score=29.95 Aligned_cols=40 Identities=33% Similarity=0.315 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 362 IVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 362 ~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
..+.--..+-+=|..|| .|+||++.+.|++++.+++..+-
T Consensus 199 l~tlaivLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaIv 238 (372)
T KOG2927|consen 199 LVTLAIVLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAIV 238 (372)
T ss_pred HHHHHHHhcccCcHHHh---cceeeeecchhHHHHHHHHHHHH
Confidence 33333444566788877 79999999888888877765443
No 285
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=25.45 E-value=3.5e+02 Score=24.67 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHH-HhHHHHHHHHHHHHHh
Q 011824 344 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-AMKSIGSAYAAL-AGGLGCFAASILNSII 403 (476)
Q Consensus 344 ~~wlip~~~l~~igEll~~p~~lef~~~~aP~-~~kg~~~gl~~l-~~a~g~~l~~~l~~~~ 403 (476)
.++++...++.++++-...|.....+.+..|+ ..++...+.... ...+|..+++.+....
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555668999999999999999999998 677888877777 4667777776555443
No 286
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=25.10 E-value=8.8e+02 Score=26.05 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 011824 352 CLIGIAEVFCIVGL----LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 405 (476)
Q Consensus 352 ~l~~igEll~~p~~----lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~ 405 (476)
++--++|+.-+... ..|+.++.-.+.-....+++.+...++.+++|.+.....+
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456777665544 4777888888888899999999999999999988876654
No 287
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=24.81 E-value=24 Score=34.99 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCcCchhHHHH
Q 011824 352 CLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLY 431 (476)
Q Consensus 352 ~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln~~~~~~~f 431 (476)
++.+.+-.+.-...+.++...-|+.+++++.| ++++..+..++.- +.... .++.+++- ..||
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~a~~~G-----q~~aGv~~s~l~i-i~~~~-----------~~~~~~~a-~~yF 66 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQAVMIG-----QGLAGVIVSLLRI-ITKAS-----------GSDVKTSA-FIYF 66 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHHHHHhh-----ccHHHHHHHHHHH-HHHHh-----------hhccchhh-hhHH
Confidence 44555666666666777776666555554433 4444444333222 22211 11222222 2355
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 011824 432 WLLAVLSVINFCAFLYSAYR 451 (476)
Q Consensus 432 ~lla~l~~~~~~~~~~~~~~ 451 (476)
.+-.++.++..+.|..+.|.
T Consensus 67 ~~a~~i~i~~~~~~~~l~~~ 86 (309)
T PF01733_consen 67 IIAVLIVILCIILYFILPRS 86 (309)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 55556666666677666554
No 288
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=23.78 E-value=7.5e+02 Score=26.72 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHH-HHHHHhhhcc
Q 011824 347 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS-ILNSIIKSVT 407 (476)
Q Consensus 347 lip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~-~l~~~~~~~~ 407 (476)
.+.+|++.++.--..++..++|-++.|.+..-|++|.+..-.+.+|.---- ++..+++..|
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 346899999999999999999999999999999999987766666654333 2233444443
No 289
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.15 E-value=44 Score=28.63 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 011824 430 LYWLLAVLSVINFCAFLYSAYRYKY 454 (476)
Q Consensus 430 ~f~lla~l~~~~~~~~~~~~~~y~~ 454 (476)
+|.++.++.++.++++...++|-++
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3343333333333344344444333
No 290
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.68 E-value=1.3e+02 Score=21.39 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=12.0
Q ss_pred HHHHHHhhccccccccccC
Q 011824 442 FCAFLYSAYRYKYRSEQKH 460 (476)
Q Consensus 442 ~~~~~~~~~~y~~~~~~~~ 460 (476)
++.-.-.+|+|.||..-|.
T Consensus 17 g~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 17 GLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHhhccccccccCC
Confidence 3344567899999854433
No 291
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=21.08 E-value=9.6e+02 Score=25.04 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
+++|+-..-++.|++-.. -++-++++|...|++.--.+.+..-.+.-+|..+|+.++.+..
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444556665443 5566789999999888777777666666677777777776544
No 292
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=20.05 E-value=9.3e+02 Score=25.27 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...+.+--+++++|.|+ -|-..+.-++-.+.... . ...... +.|+ +|..+.-.+.=.+..+.||++-....
T Consensus 165 nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r---~-~~~V~~-~~wa--ig~v~ea~law~vm~~~gwr~~l~~~ 236 (528)
T KOG0253|consen 165 NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHR---W-LLTVMS-FFWA--IGQVFEALLAWGVMSNFGWRYLLFTS 236 (528)
T ss_pred CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCC---C-cchhHH-HHHH--HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555556688899999 78888887777665331 1 233332 6666 57777666654455677887665544
Q ss_pred HH-HHHHHHHHHH
Q 011824 108 AI-AMGISNMLFF 119 (476)
Q Consensus 108 ~~-~~~i~~i~f~ 119 (476)
.+ .|+.+...++
T Consensus 237 ~~pl~~~a~f~~w 249 (528)
T KOG0253|consen 237 STPLMFAARFLVW 249 (528)
T ss_pred HhHHHHHHHHHhh
Confidence 43 4444443333
Done!