Query 011824
Match_columns 476
No_of_seqs 159 out of 1273
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 3.1E-23 1.1E-27 218.9 9.9 390 28-460 108-514 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 4.6E-19 1.6E-23 185.2 24.3 367 27-457 106-480 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.4 3.7E-11 1.3E-15 123.1 20.7 313 28-451 118-436 (451)
4 3o7q_A L-fucose-proton symport 99.0 5E-08 1.7E-12 99.3 23.8 87 27-119 115-227 (438)
5 2gfp_A EMRD, multidrug resista 98.8 2.9E-09 1E-13 106.6 5.2 83 28-116 87-169 (375)
6 4gc0_A D-xylose-proton symport 98.7 3.5E-07 1.2E-11 94.7 17.6 81 26-112 123-211 (491)
7 2cfq_A Lactose permease; trans 98.3 2.1E-06 7.1E-11 87.5 10.8 85 345-447 313-398 (417)
8 3o7q_A L-fucose-proton symport 98.2 7.5E-05 2.6E-09 75.6 18.4 113 261-404 65-177 (438)
9 4aps_A DI-OR tripeptide H+ sym 98.1 7.9E-05 2.7E-09 76.9 17.2 142 261-454 58-202 (491)
10 1pw4_A Glycerol-3-phosphate tr 98.0 0.00014 4.7E-09 73.8 16.0 113 261-403 66-178 (451)
11 2xut_A Proton/peptide symporte 97.6 0.00081 2.8E-08 69.9 15.0 141 262-452 59-202 (524)
12 2gfp_A EMRD, multidrug resista 97.5 0.00037 1.3E-08 69.0 10.7 110 261-404 39-148 (375)
13 4gc0_A D-xylose-proton symport 96.0 0.1 3.6E-06 53.1 15.0 63 342-404 124-186 (491)
14 2cfq_A Lactose permease; trans 94.7 0.013 4.5E-07 59.1 2.8 84 31-120 314-398 (417)
15 2klu_A T-cell surface glycopro 42.4 16 0.00055 26.3 2.5 28 448-475 31-60 (70)
16 2knc_B Integrin beta-3; transm 27.3 7.3 0.00025 29.4 -1.4 13 463-475 55-67 (79)
17 2ks1_B Epidermal growth factor 20.6 92 0.0031 20.5 3.1 17 437-453 24-40 (44)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=3.1e-23 Score=218.89 Aligned_cols=390 Identities=22% Similarity=0.332 Sum_probs=235.3
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.|...|+..++++|++++++. ......|++++.+.++|.++++.+++++.+..||+..|.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 567788899999999999999999999999986542 23467889999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccc---------cccccCCCCccccCCcccc
Q 011824 108 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELI---------GLYEVPGKHSAIKGSGKIA 178 (476)
Q Consensus 108 ~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 178 (476)
++..+++++.++..++.+++++|++++..+..+.+..+.+++....+. ... ..+..... .....+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 259 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGN-IGLVLALIGGVSAAYALVNI----PTLGIVA 259 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHH-HHHHHHHHHHHHHHHTGGGT----TTTCSSH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCc-cchhhhhhhhhhhhhhhccc----chhhhhh
Confidence 998888877776665555444444333333223332222221110000 000 00000000 0000000
Q ss_pred cCCchhhhhHhhhhhccccCCCCCC-------ccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhcccc
Q 011824 179 HTDDFRCLDKAALELKEDVINPSPW-------KLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 251 (476)
Q Consensus 179 ~~~~~~~l~~a~~~~~~~~~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~ 251 (476)
......+....+. . ..+| +.++..+.++.|+.+..+++++...+++..+.|..+.+..|...++.+
T Consensus 260 ~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (524)
T 2xut_A 260 GLCCAMVLVMGFV--G-----AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP 332 (524)
T ss_dssp HHHHHHHHHHHHH--H-----TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC
T ss_pred hhhhhhhhhhccc--c-----cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC
Confidence 0000000000000 0 0122 112223446677777788888888888888888888887776665543
Q ss_pred ccCeeecCCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC
Q 011824 252 MGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGY 331 (476)
Q Consensus 252 ~~g~~ip~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~ 331 (476)
. + ++.+.+..++++..++..|+.+++..|..+|++++ +++.+++.+|+++.+++++..+..+..+. +
T Consensus 333 ~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~-- 399 (524)
T 2xut_A 333 Q--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD-----G-- 399 (524)
T ss_dssp S--S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT-----T--
T ss_pred e--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc-----C--
Confidence 2 1 35667788888899999999988877766664333 56778889999998888877655432110 0
Q ss_pred cccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCC
Q 011824 332 EFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPK 411 (476)
Q Consensus 332 ~~~~~~~~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~ 411 (476)
... .+.+|+++.+++.++++.+..|...+++.+.+|+++||..+|++.....+|+.+++.+.+.+...+
T Consensus 400 ------~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~---- 468 (524)
T 2xut_A 400 ------GSA-LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT---- 468 (524)
T ss_dssp ------TCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----
T ss_pred ------CCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----
Confidence 112 567888999999999999999999999999999999999999999999999999999987654211
Q ss_pred CCCCCcccc-cCcCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccC
Q 011824 412 KGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 460 (476)
Q Consensus 412 ~~~~~~~~~-~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~~~~ 460 (476)
+.+|.++ +++. ..+.|++.+++++++.++++.+.+++++++++++
T Consensus 469 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (524)
T 2xut_A 469 --VTEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ 514 (524)
T ss_dssp --HHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC--------------
T ss_pred --cccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 0124321 1221 1223778888999988888888887776654433
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.83 E-value=4.6e-19 Score=185.17 Aligned_cols=367 Identities=17% Similarity=0.177 Sum_probs=232.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 106 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i 106 (476)
.+...++++..+.++|.|...|...++++|.+++++.+ |..++++++.+.++|..+++.+++++.++.||++.|.+
T Consensus 106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 35667888999999999999999999999999875532 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccceeecC--CCCCh--hhHHHHHHHHHHHhhccccC--CcccccccccCCCCccccCCcccccC
Q 011824 107 LAIAMGISNMLFFIGTPLYRHRL--PGGSP--LTRVAQVLVAAFRKRHAAFS--SSELIGLYEVPGKHSAIKGSGKIAHT 180 (476)
Q Consensus 107 ~~~~~~i~~i~f~~~~~~~~~~~--p~~~p--l~~~~~v~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (476)
+++..+++++.++..++.+..++ +..++ ..+..+.... ...-.- ..........+.. ...+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~l~~~~~~~~~~~~~~~~--------~~~~~ 249 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK----VSLAVAGFIAIIVVMNLVGWN--------SLPAY 249 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHH----CCCCCHHHHHHHHHHHHHSSC--------CTTHH
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHH----HHHHHHHHHHHHHHHHhccCc--------ccccc
Confidence 98888888777665544333211 11111 1111110000 000000 0000000000000 00000
Q ss_pred Cc-hhhhhHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhh-ccccccCeeec
Q 011824 181 DD-FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLP 258 (476)
Q Consensus 181 ~~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~-m~~~~~g~~ip 258 (476)
.. .............. ..|+... ...+++++..+.+++++...+++..+.+..+.+..+..+ .+.+ ..+
T Consensus 250 ~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 320 (491)
T 4aps_A 250 INLLTIVAIAIPVFYFA----WMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFP 320 (491)
T ss_dssp HHHHHHHHHHHHHHHHH----HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSC
T ss_pred hhhhhHHHHHHHHHHHH----HHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccC
Confidence 00 00000000000000 0010000 112456667777888888899999999988877666543 3332 256
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCC
Q 011824 259 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 338 (476)
Q Consensus 259 ~~~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (476)
.+.+..++.+..++..|+..++..++.||. +....++.+|+++.+++++..+....... + +
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~ 381 (491)
T 4aps_A 321 VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALYG---------T----S 381 (491)
T ss_dssp SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHCC---------C----C
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhcC---------C----C
Confidence 778889999999999999988766554432 56678899999999999887766653210 0 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824 339 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 418 (476)
Q Consensus 339 ~~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 418 (476)
.+ .+.+|+++.+++.++++.+..|...+++.+..|++.||.++|++.....+|..+++.+..++....
T Consensus 382 ~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~----------- 449 (491)
T 4aps_A 382 GK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS----------- 449 (491)
T ss_dssp TT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS-----------
T ss_pred CC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 12 567888999999999999999999999999999999999999999999999999998876654211
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011824 419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 457 (476)
Q Consensus 419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~~~~ 457 (476)
....|+++++++++..++++...++.+++.+
T Consensus 450 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (491)
T 4aps_A 450 --------EVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ 480 (491)
T ss_dssp --------TTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1246777888888888888777776665533
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=3.7e-11 Score=123.12 Aligned_cols=313 Identities=12% Similarity=0.066 Sum_probs=173.7
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 106 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g-~~~~F~i 106 (476)
+...++++..+.++|.|...|...++++|.+++++ |.+++.++..+.++|.++++.+++++.+..| |+..|.+
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 45678888999999999999999999999997532 7889999999999999999999999878888 9999999
Q ss_pred HHHHHHHHHHHHHhhccceeecCCCCChhhHHHHHHHHHHHhhccccCCcccccccccCCCCccccCCcccccCCchhhh
Q 011824 107 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 186 (476)
Q Consensus 107 ~~~~~~i~~i~f~~~~~~~~~~~p~~~pl~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (476)
.++..++..++.+...+ ++|+... . +.... ...+.++ ..
T Consensus 192 ~~~~~~~~~~~~~~~~~----~~~~~~~---------------~---~~~~~---~~~~~~~-------~~--------- 230 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMR----DTPQSCG---------------L---PPIEE---YKNDYPD-------DY--------- 230 (451)
T ss_dssp HHHHHHHHHHHHHHHCC----CSSTTTC---------------C---CSCTT---TCCC---------------------
T ss_pred HHHHHHHHHHHHHhhcc----CCHhhcC---------------C---CChhh---hcccccc-------cc---------
Confidence 88776665554433222 1111100 0 00000 0000000 00
Q ss_pred hHhhhhhccccCCCCCCccccccchhhhhhhhhhhhhhhhHHHHHHHHhhhhhhHHHHhhhccccccCeeecC---Cccc
Q 011824 187 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPV---TCMP 263 (476)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~m~~~~~g~~ip~---~~~~ 263 (476)
+. +. . . ..++ ++....+..+-..+..+.+...+.+..+....+.+.. .+.... +.++ +.+.
T Consensus 231 ~~-~~-~-~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---g~~~~~~~~~~ 294 (451)
T 1pw4_A 231 NE-KA-E-Q----ELTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT---YLKEVK---HFALDKSSWAY 294 (451)
T ss_dssp ---------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HBTTBS---CCCHHHHHHHH
T ss_pred hh-hh-h-c----cccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc---CCCHHHHHHHH
Confidence 00 00 0 0 0000 0000001100011222222222222222222222221 111111 1222 2334
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhcCCcccccCCCcch
Q 011824 264 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI-LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 342 (476)
Q Consensus 264 ~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~-ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (476)
.+..+..++..++..++. +|..+ ...+.+.++.++.+ ++++..... + . .
T Consensus 295 ~~~~~~~~~~~~~~g~l~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~-~ 344 (451)
T 1pw4_A 295 FLYEYAGIPGTLLCGWMS----DKVFR-----GNRGATGVFFMTLVTIATIVYWMN-------------------P-A-G 344 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHTST-----TCHHHHHHHHHHHHHHHHHHTTSC-------------------C-T-T
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhc-----CCchhHHHHHHHHHHHHHHHHHHh-------------------c-c-c
Confidence 444445555555544443 33200 11222334444433 333332111 0 1 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHH-HHHHHHHHHHHhhhccCCCCCCCCCccccc
Q 011824 343 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL-GCFAASILNSIIKSVTGNPKKGQPNWLAQN 421 (476)
Q Consensus 343 s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~-g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 421 (476)
+.++.+...++.+++.....+....++.+..|++.+|..+|++.....+ |..+++.+.+.+.... +|
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--------g~---- 412 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF--------GW---- 412 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--------CS----
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------Cc----
Confidence 4555666678888888888888899999999999999999999999998 9999998887654321 11
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011824 422 INTGRFDYLYWLLAVLSVINFCAFLYSAYR 451 (476)
Q Consensus 422 ln~~~~~~~f~lla~l~~~~~~~~~~~~~~ 451 (476)
...|++.++++++..++++...++
T Consensus 413 ------~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 413 ------DGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677777777777766665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.01 E-value=5e-08 Score=99.35 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=72.1
Q ss_pred chhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hccc------
Q 011824 27 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG------ 99 (476)
Q Consensus 27 ~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~-~~~g------ 99 (476)
.+.+.++++..+.++|.|...|...++++|.+++++ |...++++..+.++|.++++.+.+++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 467788999999999999999999999999998644 677889999999999999999999887 5554
Q ss_pred -------------------hhHHHHHHHHHHHHHHHHHH
Q 011824 100 -------------------WGSAFGALAIAMGISNMLFF 119 (476)
Q Consensus 100 -------------------~~~~F~i~~~~~~i~~i~f~ 119 (476)
|++.|.+.++..++..+.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999877666555544443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.79 E-value=2.9e-09 Score=106.57 Aligned_cols=83 Identities=11% Similarity=0.179 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011824 28 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 107 (476)
Q Consensus 28 ~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~ 107 (476)
+...++++..+.++|.|...|...+++.|.+++++ |.+.+.++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 56677888889999999999999999999997643 678899999999999999999999998888999999988
Q ss_pred HHHHHHHHH
Q 011824 108 AIAMGISNM 116 (476)
Q Consensus 108 ~~~~~i~~i 116 (476)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 777665543
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.70 E-value=3.5e-07 Score=94.69 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=62.6
Q ss_pred cchhHHHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 011824 26 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 97 (476)
Q Consensus 26 ~~~~~~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~fY~~iNiGa~i~~~l~~~l~~~-------- 97 (476)
..+...++++..+.++|.|+.-+....+++|..+++. |.....++..+..+|.+++..+...+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 3577889999999999999999999999999987532 67788888999999999988877666433
Q ss_pred cchhHHHHHHHHHHH
Q 011824 98 HGWGSAFGALAIAMG 112 (476)
Q Consensus 98 ~g~~~~F~i~~~~~~ 112 (476)
.+|+..+.+..+..+
T Consensus 197 ~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 197 DGWRYMFASECIPAL 211 (491)
T ss_dssp THHHHHHHTTHHHHH
T ss_pred hhhHHHhhhhhhhhh
Confidence 345666655544433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.31 E-value=2.1e-06 Score=87.54 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcccccCc
Q 011824 345 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 423 (476)
Q Consensus 345 ~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl-~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ln 423 (476)
++++...++.+++.....+....++.+..|++.||..+|+ +....++|..+++.+.+.+....
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---------------- 376 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------------- 376 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc----------------
Confidence 4444455666777666667778899999999999999988 46777788888887776543211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 011824 424 TGRFDYLYWLLAVLSVINFCAFLY 447 (476)
Q Consensus 424 ~~~~~~~f~lla~l~~~~~~~~~~ 447 (476)
.....|.+.++++++..++++.
T Consensus 377 --g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 377 --GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTT
T ss_pred --CcHHHHHHHHHHHHHHHHHHHh
Confidence 0123566677777776665543
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.15 E-value=7.5e-05 Score=75.58 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=86.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.+...+...+..|+..++..+..+| +-+.+|.++.+++.+....... .
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~-------------------~ 114 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE-------------------I 114 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH-------------------T
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc-------------------c
Confidence 345555666666777766665444333 2467788887777766543221 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.|++.-...+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus 115 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 -MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788899999999999999999999999999999999999999999999999887654
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.09 E-value=7.9e-05 Score=76.89 Aligned_cols=142 Identities=14% Similarity=0.093 Sum_probs=99.0
Q ss_pred cccchhhHHHHHHHHHHHHHHhh-hhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVP-LCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 339 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p-~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (476)
++.++..+...+..|+..++..+ +.|| +-+.+|.++.+++.+..++.
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 105 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP--------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 45566666777777777766555 3333 23566777777666554321
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCc
Q 011824 340 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM--KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNW 417 (476)
Q Consensus 340 ~~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~--kg~~~gl~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~ 417 (476)
.+.++++...++.|+++-...|....++.+..|++. |+..++++.....+|..+++.+...+.... +|
T Consensus 106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------g~ 175 (491)
T 4aps_A 106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA--------GY 175 (491)
T ss_dssp --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CH
T ss_pred --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh--------hH
Confidence 223456667889999999999999999999999988 778888899999999999998887654311 24
Q ss_pred ccccCcCchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011824 418 LAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 454 (476)
Q Consensus 418 ~~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y~~ 454 (476)
...|++.+++.++..++++...+++..
T Consensus 176 ----------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 ----------HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 235566666677777776666555543
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.96 E-value=0.00014 Score=73.78 Aligned_cols=113 Identities=10% Similarity=-0.102 Sum_probs=83.1
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.++..+...+..|+..++..+..+| +-+.+|.++.+++.+..++.... +
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~----~-------------- 116 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA----T-------------- 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH----H--------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc----c--------------
Confidence 344555556666666666554443322 24667888888877776653210 0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 403 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~ 403 (476)
.+.++++...++.|++.-...+....++.+..|++.|+..+|++....++|..+++.+....
T Consensus 117 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 117 -SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp -SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455677789999999999999999999999999999999999999999999998888654
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.59 E-value=0.00081 Score=69.88 Aligned_cols=141 Identities=14% Similarity=0.064 Sum_probs=90.4
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCcc
Q 011824 262 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 341 (476)
Q Consensus 262 ~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (476)
+.++..+..++..|+..++. +|. ....+-+.+|.++.+++.+..++..
T Consensus 59 ~~~~~~~~~~~~~~~~G~l~----dr~------~g~r~~~~~~~~~~~~~~~~~~~~~---------------------- 106 (524)
T 2xut_A 59 VFHSFVIGVYFFPLLGGWIA----DRF------FGKYNTILWLSLIYCVGHAFLAIFE---------------------- 106 (524)
T ss_dssp HHHHHHHHHHHTHHHHHHHH----TTS------SCSHHHHHHHHHHHHHHHHHHHHTS----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHH------hcchHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 33444444555555555543 332 0222345667777776665544321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH---HHHHhHHHHHHHHHHHHHhhhccCCCCCCCCCcc
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY---AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 418 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl---~~l~~a~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 418 (476)
.+.++++...++.|+++-...|....++.+..|++.|+..+++ +.....+|..+++.+...+.... +|
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------g~- 177 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--------GA- 177 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------CH-
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cH-
Confidence 1456667778999999999999999999999999999876666 88888899988888776543211 23
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011824 419 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 452 (476)
Q Consensus 419 ~~~ln~~~~~~~f~lla~l~~~~~~~~~~~~~~y 452 (476)
...|++.+++.++..++++...+++
T Consensus 178 ---------~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 178 ---------AVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2356666666666666555444433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.52 E-value=0.00037 Score=69.02 Aligned_cols=110 Identities=10% Similarity=0.010 Sum_probs=80.9
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCc
Q 011824 261 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 340 (476)
Q Consensus 261 ~~~~in~~~ill~~pl~~~~~~p~~~~~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (476)
++.++..+...+..|+..++. +|.+++ . -+.+|.++.+++.+..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~----dr~g~r----~---~~~~~~~~~~~~~~~~~~~---------------------- 85 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPIS----DRVGRR----P---VILVGMSIFMLATLVAVTT---------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHH----TTSCCC----C---CCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhCCc----h---hHHHHHHHHHHHHHHHHHh----------------------
Confidence 344555555666666655554 443222 1 2446777777776665443
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 341 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 341 ~~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
.+.++++...++.+++.....+....++.+..|++.|+..+|++.....+|..+++.+.....
T Consensus 86 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 86 -SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred -ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 234566777899999999999999999999999999999999999999999999998887643
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.00 E-value=0.1 Score=53.08 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 011824 342 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 404 (476)
Q Consensus 342 ~s~~wlip~~~l~~igEll~~p~~lef~~~~aP~~~kg~~~gl~~l~~a~g~~l~~~l~~~~~ 404 (476)
-+.+.++..-++.|+|+-...+....++.+.+|++.|+..++++.....+|..++..+.....
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 456677888899999999999999999999999999999999999999999999887776544
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=94.68 E-value=0.013 Score=59.05 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhccCCcccchhhhhccCCCCCchhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 011824 31 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 109 (476)
Q Consensus 31 ~~~~gL~li~~G~G~~kpni~a~~~dq~~~~~~~~~~~~~~~F~~-fY~~iNiGa~i~~~l~~~l~~~~g~~~~F~i~~~ 109 (476)
.+.+...+.+++.+.+-+...++..|.++++ .|..++.+ +..+.++|++++|.+.+++.++.||...|.+.++
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence 3444444455565655666677888888742 25666777 4667779999999999999888899999999888
Q ss_pred HHHHHHHHHHh
Q 011824 110 AMGISNMLFFI 120 (476)
Q Consensus 110 ~~~i~~i~f~~ 120 (476)
..+++.++.+.
T Consensus 388 ~~l~~~~~~~~ 398 (417)
T 2cfq_A 388 VALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 87777766544
No 15
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=42.41 E-value=16 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=17.7
Q ss_pred hhccccccccccC--CCccccccccccCCC
Q 011824 448 SAYRYKYRSEQKH--GNDYEVMENKLYDSP 475 (476)
Q Consensus 448 ~~~~y~~~~~~~~--~~~~~~~~~~~~~~~ 475 (476)
.+|+..++.+++- --.+.++|+|+-..|
T Consensus 31 cvkcrhRrrqAeRMSQikrlLsEKKTCQC~ 60 (70)
T 2klu_A 31 SVRSRHRRRQAERMSQIKRLLSEKKTSQSP 60 (70)
T ss_dssp HHHSSCCSSSCTTSSHHHHHHHSSSCCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCc
Confidence 4555555555544 335678999998765
No 16
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.29 E-value=7.3 Score=29.41 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=7.4
Q ss_pred ccccccccccCCC
Q 011824 463 DYEVMENKLYDSP 475 (476)
Q Consensus 463 ~~~~~~~~~~~~~ 475 (476)
..+..||=+|.+|
T Consensus 55 ~w~~~~NPlyk~~ 67 (79)
T 2knc_B 55 KWDTANNPLYKEA 67 (79)
T ss_dssp HHTTTTCCHHHHC
T ss_pred ccccCCCCCccCC
Confidence 3455666666554
No 17
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.63 E-value=92 Score=20.49 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhcccc
Q 011824 437 LSVINFCAFLYSAYRYK 453 (476)
Q Consensus 437 l~~~~~~~~~~~~~~y~ 453 (476)
+.++.+++++++.++.+
T Consensus 24 ~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 24 LLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhhhHh
Confidence 33444455555555443
Done!