BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011826
         (476 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZSZ|B Chain B, Crystal Structure Of A Computationally Designed Sspb
           Heterodimer
          Length = 111

 Score = 30.4 bits (67), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 357 MKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLL 393
           + D+ V  S+   L VD  Y G+  P++Y+ DG ++L
Sbjct: 16  LYDWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIVL 52


>pdb|1OU8|A Chain A, Structure Of An Aaa+ Protease Delivery Protein In Complex
           With A Peptide Degradation Tag
 pdb|1OU8|B Chain B, Structure Of An Aaa+ Protease Delivery Protein In Complex
           With A Peptide Degradation Tag
          Length = 111

 Score = 30.4 bits (67), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 359 DYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLL 393
           D+ V  S+   L VD  Y G+  P++Y+ DG ++L
Sbjct: 18  DWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIVL 52


>pdb|1ZSZ|A Chain A, Crystal Structure Of A Computationally Designed Sspb
           Heterodimer
          Length = 110

 Score = 30.4 bits (67), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 359 DYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLL 393
           D+ V  S+   L VD  Y G+  P++Y+ DG ++L
Sbjct: 18  DWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIVL 52


>pdb|1ZSZ|C Chain C, Crystal Structure Of A Computationally Designed Sspb
           Heterodimer
          Length = 129

 Score = 30.4 bits (67), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 359 DYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLL 393
           D+ V  S+   L VD  Y G+  P++Y+ DG ++L
Sbjct: 18  DWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIVL 52


>pdb|1OU9|A Chain A, Structure Of Sspb, A Aaa+ Protease Delivery Protein
 pdb|1OU9|B Chain B, Structure Of Sspb, A Aaa+ Protease Delivery Protein
 pdb|1OU9|C Chain C, Structure Of Sspb, A Aaa+ Protease Delivery Protein
 pdb|1OUL|A Chain A, Structure Of The Aaa+ Protease Delivery Protein Sspb
 pdb|1OUL|B Chain B, Structure Of The Aaa+ Protease Delivery Protein Sspb
          Length = 129

 Score = 30.4 bits (67), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 359 DYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLL 393
           D+ V  S+   L VD  Y G+  P++Y+ DG ++L
Sbjct: 18  DWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIVL 52


>pdb|3UPU|A Chain A, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
 pdb|3UPU|B Chain B, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
 pdb|3UPU|C Chain C, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
          Length = 459

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)

Query: 242 FDDFLNRTAEIYSLGGAAWRKVGNAPWS 269
           F+ FL +TAE Y      W K G APWS
Sbjct: 372 FNLFLGKTAETYK----NWNKGGKAPWS 395


>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
          Destruction Motif Binding And Lysine Specificity On The
          Scfbeta-Trcp1 Ubiquitin Ligase
          Length = 435

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 55 HILIDILSRLPLKSIFISRCVCKTWHILISDPLF 88
          HI  +ILS L  KS+  +  VCK W+ + SD + 
Sbjct: 21 HIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54


>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
 pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
           Chymosin At 2.3 Angstroms Resolution
 pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
           Refinement At 2.2 Angstroms Resolution Of Bovine
           Chymosin
 pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
          Length = 323

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 223 ISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAAWRKVGNAPWSPIAGLFPTYLNGV 282
           I G  Y   + +Y +   VFD+ +NR      L      + G      +  + P+Y  G 
Sbjct: 122 ILGMAYPSLASEYSIP--VFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGS 179

Query: 283 IHWV 286
           +HWV
Sbjct: 180 LHWV 183


>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
           Kinetic Characterization And X-Ray Analysis At
           2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
           Chymosin
          Length = 323

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 223 ISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAAWRKVGNAPWSPIAGLFPTYLNGV 282
           I G  Y   + +Y +   VFD+ +NR      L      + G      +  + P+Y  G 
Sbjct: 122 ILGMAYPSLASEYSIP--VFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGS 179

Query: 283 IHWV 286
           +HWV
Sbjct: 180 LHWV 183


>pdb|1XKS|A Chain A, The Crystal Structure Of The N-Terminal Domain Of Nup133
           Reveals A Beta-Propeller Fold Common To Several
           Nucleoporins
          Length = 450

 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 174 DIVNSCNGFLCLRKPFHR--NPCIICNPITGEYVTIPKPAAE-DDKKTLRTVISGFGYSF 230
           D+  +C+G + L   +H   NPC+I   +    +TI     +  D  T+   ++ +   F
Sbjct: 280 DLKQNCDGLVILAAAWHSADNPCLIYYSL----ITIEDNGCQMSDAVTVE--VTQYNPPF 333

Query: 231 RSKQYKVLRLVFDDFLNRTAEIY 253
           +S+   + +L   +F N+TA +Y
Sbjct: 334 QSEDLILCQLTVPNFSNQTAYLY 356


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,069,203
Number of Sequences: 62578
Number of extensions: 649738
Number of successful extensions: 1004
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 11
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)