Query 011826
Match_columns 476
No_of_seqs 224 out of 1849
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 5.8E-34 1.2E-38 268.3 27.2 219 176-408 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 1.8E-16 4E-21 140.8 17.7 147 276-431 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 1.2E-14 2.5E-19 123.9 15.0 109 276-394 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.4 9.8E-11 2.1E-15 114.9 22.6 305 47-414 2-354 (373)
5 PF12937 F-box-like: F-box-lik 98.8 2.1E-09 4.6E-14 73.9 1.8 43 49-91 1-43 (47)
6 PHA02713 hypothetical protein; 98.7 1.2E-06 2.7E-11 92.8 22.0 204 192-420 320-547 (557)
7 PF00646 F-box: F-box domain; 98.6 5.6E-09 1.2E-13 72.2 0.3 45 49-93 3-47 (48)
8 PLN02193 nitrile-specifier pro 98.6 4.6E-05 1E-09 79.4 26.6 208 192-416 193-420 (470)
9 KOG4441 Proteins containing BT 98.5 5.2E-06 1.1E-10 88.0 19.3 211 176-414 328-554 (571)
10 smart00256 FBOX A Receptor for 98.5 2.6E-08 5.5E-13 66.3 0.9 39 52-90 1-39 (41)
11 PHA03098 kelch-like protein; P 98.5 3E-05 6.6E-10 82.3 24.3 194 193-414 312-519 (534)
12 PLN02153 epithiospecifier prot 98.5 6.6E-05 1.4E-09 74.9 25.4 209 192-415 50-293 (341)
13 PHA02713 hypothetical protein; 98.4 3E-05 6.6E-10 82.3 22.0 193 193-414 273-497 (557)
14 KOG4441 Proteins containing BT 98.4 2.3E-05 5.1E-10 83.1 19.7 196 192-414 301-507 (571)
15 TIGR03547 muta_rot_YjhT mutatr 98.4 0.00011 2.3E-09 73.6 22.8 217 179-414 16-306 (346)
16 PHA02790 Kelch-like protein; P 98.3 0.00016 3.5E-09 75.6 22.4 183 193-412 288-476 (480)
17 PRK14131 N-acetylneuraminic ac 98.1 0.00058 1.3E-08 69.1 22.8 219 177-414 35-328 (376)
18 TIGR03548 mutarot_permut cycli 98.1 0.0014 3.1E-08 64.8 24.3 197 193-414 40-287 (323)
19 PLN02153 epithiospecifier prot 98.1 0.0011 2.4E-08 66.2 22.8 162 192-371 101-293 (341)
20 PHA02790 Kelch-like protein; P 98.0 0.00043 9.4E-09 72.3 18.8 139 177-346 315-454 (480)
21 PHA03098 kelch-like protein; P 97.9 0.00091 2E-08 71.0 19.1 191 194-414 266-472 (534)
22 PLN02193 nitrile-specifier pro 97.8 0.0049 1.1E-07 64.3 22.7 163 192-373 244-421 (470)
23 TIGR03548 mutarot_permut cycli 97.7 0.0012 2.6E-08 65.3 16.3 136 192-346 139-311 (323)
24 PRK14131 N-acetylneuraminic ac 97.7 0.011 2.4E-07 59.9 22.1 96 248-346 189-287 (376)
25 TIGR03547 muta_rot_YjhT mutatr 97.5 0.019 4.1E-07 57.3 21.1 95 248-346 168-265 (346)
26 KOG0281 Beta-TrCP (transducin 97.3 0.002 4.3E-08 61.6 10.7 47 48-94 74-124 (499)
27 KOG4693 Uncharacterized conser 97.3 0.0024 5.1E-08 59.1 10.4 225 177-419 31-289 (392)
28 KOG2120 SCF ubiquitin ligase, 97.2 0.0001 2.2E-09 69.5 0.6 43 47-89 96-138 (419)
29 KOG4693 Uncharacterized conser 97.0 0.015 3.2E-07 54.0 12.8 138 247-394 156-308 (392)
30 KOG1230 Protein containing rep 96.6 0.1 2.2E-06 51.6 15.7 211 193-419 99-353 (521)
31 KOG0379 Kelch repeat-containin 96.4 0.74 1.6E-05 48.2 21.6 182 176-373 119-312 (482)
32 KOG0379 Kelch repeat-containin 95.3 2 4.2E-05 45.1 19.4 207 193-417 89-312 (482)
33 KOG2997 F-box protein FBX9 [Ge 95.0 0.011 2.4E-07 56.3 1.3 46 49-94 107-157 (366)
34 KOG1230 Protein containing rep 91.6 8 0.00017 38.7 14.8 138 248-394 98-248 (521)
35 PF13964 Kelch_6: Kelch motif 91.1 0.5 1.1E-05 32.3 4.6 39 275-314 6-44 (50)
36 COG4257 Vgb Streptogramin lyas 90.7 4.8 0.0001 38.2 11.7 125 175-320 194-319 (353)
37 PF02191 OLF: Olfactomedin-lik 90.5 16 0.00034 34.6 17.0 128 275-416 73-213 (250)
38 PF07762 DUF1618: Protein of u 90.2 2.6 5.6E-05 35.5 9.2 77 299-375 7-99 (131)
39 PF13360 PQQ_2: PQQ-like domai 90.0 16 0.00034 33.7 17.7 194 179-411 35-235 (238)
40 PF13964 Kelch_6: Kelch motif 87.9 1.1 2.3E-05 30.6 4.3 21 192-212 28-48 (50)
41 PF07893 DUF1668: Protein of u 87.8 31 0.00067 34.3 16.3 110 192-319 86-223 (342)
42 PF01344 Kelch_1: Kelch motif; 86.5 1.8 4E-05 28.8 4.8 39 275-314 6-44 (47)
43 PF08450 SGL: SMP-30/Gluconola 85.9 30 0.00065 32.3 21.1 206 177-416 8-223 (246)
44 KOG4341 F-box protein containi 85.6 0.35 7.7E-06 48.2 1.0 41 45-85 68-108 (483)
45 PF07646 Kelch_2: Kelch motif; 84.4 2.8 6E-05 28.4 4.9 42 275-316 6-48 (49)
46 smart00284 OLF Olfactomedin-li 79.7 57 0.0012 30.9 16.3 129 275-416 78-218 (255)
47 smart00612 Kelch Kelch domain. 79.6 3.8 8.2E-05 26.8 4.1 21 247-267 14-34 (47)
48 PF07250 Glyoxal_oxid_N: Glyox 77.9 63 0.0014 30.4 14.2 174 249-437 47-226 (243)
49 KOG0274 Cdc4 and related F-box 74.5 0.9 2E-05 48.0 -0.3 47 46-92 105-151 (537)
50 PF10282 Lactonase: Lactonase, 74.5 94 0.002 30.8 17.5 118 280-415 154-286 (345)
51 PRK05137 tolB translocation pr 72.2 1.2E+02 0.0027 31.1 21.7 188 191-414 225-420 (435)
52 PF13418 Kelch_4: Galactose ox 70.5 7.3 0.00016 26.1 3.7 38 275-313 6-44 (49)
53 PF07893 DUF1668: Protein of u 70.4 95 0.0021 30.9 13.0 55 249-308 200-254 (342)
54 PF01344 Kelch_1: Kelch motif; 70.1 6.1 0.00013 26.1 3.2 20 247-266 27-46 (47)
55 PRK11138 outer membrane biogen 66.3 1.5E+02 0.0033 29.9 19.5 140 249-410 171-316 (394)
56 KOG0310 Conserved WD40 repeat- 65.9 1.7E+02 0.0036 30.2 14.5 189 222-449 28-225 (487)
57 PF08450 SGL: SMP-30/Gluconola 65.6 1.2E+02 0.0025 28.2 15.3 108 280-413 11-129 (246)
58 PF02897 Peptidase_S9_N: Proly 65.0 1.6E+02 0.0035 29.8 20.2 163 232-414 237-412 (414)
59 TIGR03300 assembly_YfgL outer 63.7 1.6E+02 0.0035 29.3 20.4 140 249-410 156-301 (377)
60 COG2706 3-carboxymuconate cycl 63.0 1.6E+02 0.0035 29.1 16.2 140 297-447 166-319 (346)
61 PF13415 Kelch_3: Galactose ox 62.5 18 0.0004 24.2 4.4 18 296-313 17-34 (49)
62 PF13418 Kelch_4: Galactose ox 61.3 10 0.00022 25.4 2.9 21 247-267 28-48 (49)
63 KOG4152 Host cell transcriptio 59.7 84 0.0018 32.7 10.0 65 192-264 57-124 (830)
64 PF07646 Kelch_2: Kelch motif; 58.3 17 0.00038 24.4 3.7 20 247-266 29-48 (49)
65 KOG2502 Tub family proteins [G 56.7 7.7 0.00017 37.9 2.2 39 47-85 43-89 (355)
66 PRK11028 6-phosphogluconolacto 55.3 2.1E+02 0.0045 27.8 19.7 144 248-414 57-215 (330)
67 PF13360 PQQ_2: PQQ-like domai 55.1 1.7E+02 0.0036 26.7 16.9 135 249-411 4-145 (238)
68 PRK11138 outer membrane biogen 55.0 2.4E+02 0.0051 28.4 18.4 106 275-411 251-358 (394)
69 cd01207 Ena-Vasp Enabled-VASP- 54.5 48 0.001 27.1 6.1 45 193-244 10-54 (111)
70 KOG1274 WD40 repeat protein [G 52.0 3.9E+02 0.0084 30.0 20.1 69 340-410 152-222 (933)
71 TIGR01640 F_box_assoc_1 F-box 50.5 1.8E+02 0.004 26.6 10.5 120 278-416 3-137 (230)
72 PLN02772 guanylate kinase 49.8 95 0.0021 31.5 8.7 74 275-358 29-106 (398)
73 PRK00178 tolB translocation pr 48.6 3.1E+02 0.0067 27.9 21.5 187 192-414 223-414 (430)
74 KOG2055 WD40 repeat protein [G 47.0 3.4E+02 0.0074 27.9 13.4 97 298-410 280-378 (514)
75 smart00564 PQQ beta-propeller 46.3 45 0.00098 19.8 3.9 25 387-411 5-29 (33)
76 PF06433 Me-amine-dh_H: Methyl 45.0 2.2E+02 0.0047 28.3 10.1 126 275-414 188-329 (342)
77 TIGR03866 PQQ_ABC_repeats PQQ- 44.7 2.6E+02 0.0057 26.0 23.5 181 191-412 52-243 (300)
78 KOG0647 mRNA export protein (c 43.9 2.5E+02 0.0055 27.3 9.9 67 348-419 48-115 (347)
79 TIGR03074 PQQ_membr_DH membran 43.9 4.7E+02 0.01 29.2 13.7 123 275-411 189-349 (764)
80 PRK04792 tolB translocation pr 42.2 4.1E+02 0.0088 27.4 21.1 187 192-414 242-433 (448)
81 KOG1310 WD40 repeat protein [G 41.7 1.8E+02 0.0039 30.6 9.2 112 178-308 59-180 (758)
82 COG3386 Gluconolactonase [Carb 41.6 3.5E+02 0.0075 26.5 11.7 33 281-320 37-69 (307)
83 cd01206 Homer Homer type EVH1 41.3 71 0.0015 25.9 5.0 41 192-242 11-52 (111)
84 KOG4378 Nuclear protein COP1 [ 39.3 1.6E+02 0.0035 30.5 8.4 71 383-456 256-332 (673)
85 TIGR03300 assembly_YfgL outer 37.3 4.3E+02 0.0092 26.2 19.6 106 275-411 236-343 (377)
86 COG1520 FOG: WD40-like repeat 36.3 4.4E+02 0.0096 26.2 13.4 110 276-411 64-176 (370)
87 PF01011 PQQ: PQQ enzyme repea 36.1 58 0.0013 20.5 3.3 22 390-411 2-23 (38)
88 COG4946 Uncharacterized protei 34.6 3.4E+02 0.0075 28.1 9.7 99 284-415 196-304 (668)
89 cd00260 Sialidase Sialidases o 33.8 4.7E+02 0.01 25.7 11.7 88 275-372 150-241 (351)
90 COG3055 Uncharacterized protei 33.1 1.6E+02 0.0035 29.3 7.0 116 248-372 113-265 (381)
91 PF03088 Str_synth: Strictosid 31.8 1E+02 0.0022 24.1 4.5 18 397-414 36-53 (89)
92 KOG3545 Olfactomedin and relat 30.9 4.6E+02 0.01 24.7 11.4 144 258-416 56-212 (249)
93 PF09372 PRANC: PRANC domain; 30.5 26 0.00057 27.6 1.1 24 47-70 70-93 (97)
94 cd00837 EVH1 EVH1 (Enabled, Va 29.3 2.2E+02 0.0048 22.7 6.4 52 193-254 10-62 (104)
95 PF13570 PQQ_3: PQQ-like domai 28.2 95 0.0021 19.6 3.4 22 386-407 19-40 (40)
96 KOG1963 WD40 repeat protein [G 28.2 8.7E+02 0.019 27.1 19.3 59 348-407 477-539 (792)
97 PF13013 F-box-like_2: F-box-l 27.5 25 0.00055 28.6 0.6 30 48-77 21-50 (109)
98 KOG0294 WD40 repeat-containing 26.6 6.2E+02 0.013 24.9 12.4 89 192-307 149-238 (362)
99 PF08268 FBA_3: F-box associat 25.8 2.8E+02 0.006 22.8 6.7 41 397-437 19-62 (129)
100 KOG0296 Angio-associated migra 25.8 6.8E+02 0.015 25.0 11.0 110 298-410 86-224 (399)
101 PRK11028 6-phosphogluconolacto 25.7 6.1E+02 0.013 24.5 23.5 111 280-407 136-259 (330)
102 PF00568 WH1: WH1 domain; Int 25.6 2.1E+02 0.0046 23.1 5.8 39 193-242 17-56 (111)
103 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.4 8.3E+02 0.018 25.9 13.1 119 275-410 64-193 (527)
104 PF15408 PH_7: Pleckstrin homo 23.7 27 0.00058 26.8 0.0 24 66-89 76-99 (104)
105 KOG3926 F-box proteins [Amino 21.6 72 0.0016 30.3 2.4 44 46-89 199-243 (332)
106 KOG0265 U5 snRNP-specific prot 20.8 3.8E+02 0.0083 26.1 7.0 66 338-410 58-124 (338)
107 PF09003 Phage_integ_N: Bacter 20.8 96 0.0021 23.3 2.5 17 192-208 26-43 (75)
108 KOG1912 WD40 repeat protein [G 20.2 1.2E+03 0.027 26.0 11.6 155 177-360 123-306 (1062)
109 PF14377 DUF4414: Domain of un 20.0 35 0.00075 27.7 -0.0 19 45-63 2-20 (108)
110 PF13919 ASXH: Asx homology do 20.0 40 0.00087 28.7 0.4 27 43-69 38-64 (138)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=5.8e-34 Score=268.30 Aligned_cols=219 Identities=25% Similarity=0.411 Sum_probs=163.8
Q ss_pred EecccceEEEeecCCCccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcC--ccccEEEEE
Q 011826 176 VNSCNGFLCLRKPFHRNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDD--FLNRTAEIY 253 (476)
Q Consensus 176 ~~s~~GLlcl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~--~~~~~~eVy 253 (476)
+++||||||+... ..++||||+||+++.||+++.. .... ....++||||+.+++||||++.... .....++||
T Consensus 1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~-~~~~-~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vy 75 (230)
T TIGR01640 1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSR-RSNK-ESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVY 75 (230)
T ss_pred CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCc-cccc-ccceEEEeecccCCcEEEEEEEeecCCCCCccEEEE
Confidence 4799999999864 4699999999999999976531 1111 1126899999999999999996641 235689999
Q ss_pred EeCCCceEEccCCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEE-EEcCCCCCCCCCCccCCccee
Q 011826 254 SLGGAAWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFC-VIPAPPHFAEKPKTRDNLYDM 332 (476)
Q Consensus 254 ss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~-~i~lP~~~~~~~~~~~~~~~~ 332 (476)
++++++||.+...+........+|++||++||++..... .....|++||+.+|+|+ .+++|...... ....
T Consensus 76 s~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~--~~~~~IvsFDl~~E~f~~~i~~P~~~~~~------~~~~ 147 (230)
T TIGR01640 76 TLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKT--NPDYFIVSFDVSSERFKEFIPLPCGNSDS------VDYL 147 (230)
T ss_pred EeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCC--CCcEEEEEEEcccceEeeeeecCcccccc------ccce
Confidence 999999999985432222222599999999999976211 11127999999999999 59999764321 1146
Q ss_pred eEEeeCCeEEEEecCC-CCCeEEEeeccCCCCcceEEEEEEeCCCc----ceeeEEEEecCCcEEEEecC---CEEEEEe
Q 011826 333 NLGVLGGCLSICDVTY-FAPPDIWVMKDYGVQESWIKQLSVDNGYF----GICRPIKYLDDGSLLLFCKR---RALVLYN 404 (476)
Q Consensus 333 ~L~~~~G~L~~~~~~~-~~~l~IWvl~~~~~~~~W~~~~~I~~~~~----~~~~p~~~~~~g~il~~~~~---~~l~~yd 404 (476)
.|++++|+||++.... ...++||+|++++. ..|+|.++|+.... ....|+++.++|+|++...+ ..++.||
T Consensus 148 ~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~ 226 (230)
T TIGR01640 148 SLINYKGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYN 226 (230)
T ss_pred EEEEECCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEe
Confidence 7999999999987643 25699999999974 56999999985211 11358889999999998764 3499999
Q ss_pred CCCC
Q 011826 405 PVEK 408 (476)
Q Consensus 405 l~t~ 408 (476)
++++
T Consensus 227 ~~~~ 230 (230)
T TIGR01640 227 VGEN 230 (230)
T ss_pred ccCC
Confidence 9875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.73 E-value=1.8e-16 Score=140.79 Aligned_cols=147 Identities=27% Similarity=0.505 Sum_probs=100.8
Q ss_pred ceEEcceEEEEEeeccCCCCCcceEEEEECCCceE-EEEcCCCCCCCCCCccCCcceeeEEee-CCeEEEEecC-CCCCe
Q 011826 276 PTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERF-CVIPAPPHFAEKPKTRDNLYDMNLGVL-GGCLSICDVT-YFAPP 352 (476)
Q Consensus 276 ~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f-~~i~lP~~~~~~~~~~~~~~~~~L~~~-~G~L~~~~~~-~~~~l 352 (476)
+|++||++||++........ ..|++||+++|+| ..+++|...... . ....|.+. +|+||+.... ....+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~--~~IlsFDl~~E~F~~~~~lP~~~~~~-----~-~~~~L~~v~~~~L~~~~~~~~~~~~ 72 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEK--DFILSFDLSTEKFGRSLPLPFCNDDD-----D-DSVSLSVVRGDCLCVLYQCDETSKI 72 (164)
T ss_pred CEEECCEEEeeEEecCCCCc--eEEEEEeccccccCCEECCCCccCcc-----C-CEEEEEEecCCEEEEEEeccCCccE
Confidence 68999999999987332211 2799999999999 889999877622 1 15667544 6799988642 33469
Q ss_pred EEEeeccCCC-CcceEEEEEEeCCCcce-----eeE-EEEecCCcEEEEecC-------CEEEEEeCCCCcEEEEEEeeC
Q 011826 353 DIWVMKDYGV-QESWIKQLSVDNGYFGI-----CRP-IKYLDDGSLLLFCKR-------RALVLYNPVEKNTRYLLIHED 418 (476)
Q Consensus 353 ~IWvl~~~~~-~~~W~~~~~I~~~~~~~-----~~p-~~~~~~g~il~~~~~-------~~l~~ydl~t~~~~~v~i~g~ 418 (476)
+||+|++++. +++|+|.++|+...... ..+ +.+..++++++..+. ..++.|+ +.+.++++.+...
T Consensus 73 ~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~ 151 (164)
T PF07734_consen 73 EIWVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDK 151 (164)
T ss_pred EEEEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccC
Confidence 9999997653 78999999999743211 112 222334566665431 3466777 6667777776433
Q ss_pred CCCeEEEEEecCC
Q 011826 419 QSMIFEAITHVPS 431 (476)
Q Consensus 419 ~~~~~~~~~Y~~S 431 (476)
..+++.++.|+||
T Consensus 152 ~~~~~~~~~YvpS 164 (164)
T PF07734_consen 152 SSCWPSICNYVPS 164 (164)
T ss_pred CCCCCCEEEECCC
Confidence 3456788899997
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.62 E-value=1.2e-14 Score=123.91 Aligned_cols=109 Identities=25% Similarity=0.361 Sum_probs=82.0
Q ss_pred ceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCC---Ce
Q 011826 276 PTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFA---PP 352 (476)
Q Consensus 276 ~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~---~l 352 (476)
++++||++||++.. .......|++||+++|+|+.|++|...... .....|.+++|+|+++...... .+
T Consensus 1 gicinGvly~~a~~---~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~------~~~~~L~~~~G~L~~v~~~~~~~~~~~ 71 (129)
T PF08268_consen 1 GICINGVLYWLAWS---EDSDNNVIVSFDVRSEKFRFIKLPEDPYSS------DCSSTLIEYKGKLALVSYNDQGEPDSI 71 (129)
T ss_pred CEEECcEEEeEEEE---CCCCCcEEEEEEcCCceEEEEEeeeeeccc------cCccEEEEeCCeEEEEEecCCCCcceE
Confidence 68999999999986 223345899999999999999999221111 1377899999999998764443 49
Q ss_pred EEEeeccCCCCcceEEEEEEeCC---C---cceeeEEEEecCCcEEEE
Q 011826 353 DIWVMKDYGVQESWIKQLSVDNG---Y---FGICRPIKYLDDGSLLLF 394 (476)
Q Consensus 353 ~IWvl~~~~~~~~W~~~~~I~~~---~---~~~~~p~~~~~~g~il~~ 394 (476)
+||+|+|++ +++|++++.+-.. . .....+.++.++|+|++.
T Consensus 72 ~iWvLeD~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 72 DIWVLEDYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EEEEeeccc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 999999998 5899988664331 1 134567788888998887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.38 E-value=9.8e-11 Score=114.88 Aligned_cols=305 Identities=12% Similarity=0.025 Sum_probs=148.8
Q ss_pred CCCCCCCHHHHHHHHhcCC-ccccceeeccchhhhhhhCChHHHHHHhhcCCCCCCeEEEeeCCCCcccceEEEeecccC
Q 011826 47 STIIDLPSHILIDILSRLP-LKSIFISRCVCKTWHILISDPLFATLHFDRNSGSNPELYLRTDFSTCISRTLHWVDLESF 125 (476)
Q Consensus 47 ~~~~~LP~Dll~eIL~RLP-~ksL~R~r~VCK~W~~lissp~F~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~f 125 (476)
+.|++||+|||..|..||| ..+++|||+||++||+.+....= ... ...+|+.++...... ..+..-++.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~---~~~~~~~~~~~~~~~----~~~~~~~~~-- 71 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNP---FRTRPLILFNPINPS----ETLTDDRSY-- 71 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCC---cccccccccCcccCC----CCccccccc--
Confidence 4689999999999999997 77999999999999998874210 000 001133222110000 000000000
Q ss_pred CCCCccccceeeecccccCCCCCCCCCCCcccCCCCCCCCcccCCCceEE---EecccceEEEeecC-CCccEEEEcccc
Q 011826 126 PGYNHAQCQWAKINAQFYLPKRYPKPNPKACTSNGNSNRGNRRAGREYDI---VNSCNGFLCLRKPF-HRNPCIICNPIT 201 (476)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~GLlcl~~~~-~~~~~~V~NP~T 201 (476)
.. -| .+ ++....-+.+ -++..|+|...... ....+.+.||++
T Consensus 72 ----------~~------~~------~~------------~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLs 117 (373)
T PLN03215 72 ----------IS------RP------GA------------FLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLS 117 (373)
T ss_pred ----------cc------cc------cc------------eeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccc
Confidence 00 00 00 0000000111 13468888765432 346799999999
Q ss_pred cceeecCCCCCCCCcCccce----eEEEE-eEeCC---CCCe--EEEEEEE--cCccccEEEEEEe------CCCceEEc
Q 011826 202 GEYVTIPKPAAEDDKKTLRT----VISGF-GYSFR---SKQY--KVLRLVF--DDFLNRTAEIYSL------GGAAWRKV 263 (476)
Q Consensus 202 ~~~~~LP~~~~~~~~~~~~~----~~~~~-g~d~~---~~~y--KVv~~~~--~~~~~~~~eVyss------~t~~Wr~~ 263 (476)
+.-..+|+-.. +.- .+.. ..+.+ +.+.. ...| |++.... ++.+...+-|+.- ..++|..+
T Consensus 118 r~~~~~~~~~l-nll-~f~v~ei~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l 195 (373)
T PLN03215 118 RLPLRHSSESV-DLL-EFTVSEIREAYQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKAL 195 (373)
T ss_pred cCccCCCCccc-eee-eeEEEEccceEEEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEc
Confidence 99877775322 100 0000 11111 11100 0013 2222111 1101112222211 14688888
Q ss_pred cCCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEE
Q 011826 264 GNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSI 343 (476)
Q Consensus 264 ~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~ 343 (476)
+... .. ....|+.+|.+|-+... +.+.++|..- ..+.+..+-........ .+....|++..|.|++
T Consensus 196 ~~~~-~~--~~DIi~~kGkfYAvD~~--------G~l~~i~~~l-~i~~v~~~i~~~~~~g~--~~~~~yLVEs~GdLLm 261 (373)
T PLN03215 196 KQMG-YH--FSDIIVHKGQTYALDSI--------GIVYWINSDL-EFSRFGTSLDENITDGC--WTGDRRFVECCGELYI 261 (373)
T ss_pred cCCC-ce--eeEEEEECCEEEEEcCC--------CeEEEEecCC-ceeeecceecccccCCc--ccCceeEEEECCEEEE
Confidence 6322 11 11779999999998532 2677777432 12222211100000000 0114669999999998
Q ss_pred EecCC----------------CCCeEEEeeccCCCCcceEEEEEEeCC------CcceeeEEE---EecCCcEEEEecCC
Q 011826 344 CDVTY----------------FAPPDIWVMKDYGVQESWIKQLSVDNG------YFGICRPIK---YLDDGSLLLFCKRR 398 (476)
Q Consensus 344 ~~~~~----------------~~~l~IWvl~~~~~~~~W~~~~~I~~~------~~~~~~p~~---~~~~g~il~~~~~~ 398 (476)
+.... ...++|+.++.. ...|+++.+++-. ......+.. -...+-|+| .++.
T Consensus 262 V~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYF-tdd~ 338 (373)
T PLN03215 262 VERLPKESTWKRKADGFEYSRTVGFKVYKFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYF-TEDT 338 (373)
T ss_pred EEEEccCcccccccccccccceeEEEEEEEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEE-ECCC
Confidence 86521 124888988754 3789998776531 011111111 012234444 4566
Q ss_pred EEEEEeCCCCcEEEEE
Q 011826 399 ALVLYNPVEKNTRYLL 414 (476)
Q Consensus 399 ~l~~ydl~t~~~~~v~ 414 (476)
...+||++.+++.-+.
T Consensus 339 ~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 339 MPKVFKLDNGNGSSIE 354 (373)
T ss_pred cceEEECCCCCccceE
Confidence 7889999998866554
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.79 E-value=2.1e-09 Score=73.95 Aligned_cols=43 Identities=28% Similarity=0.530 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeccchhhhhhhCChHHHHH
Q 011826 49 IIDLPSHILIDILSRLPLKSIFISRCVCKTWHILISDPLFATL 91 (476)
Q Consensus 49 ~~~LP~Dll~eIL~RLP~ksL~R~r~VCK~W~~lissp~F~~~ 91 (476)
|..||+|++.+||+.||+++++++..|||+|+.++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5689999999999999999999999999999999988765544
No 6
>PHA02713 hypothetical protein; Provisional
Probab=98.75 E-value=1.2e-06 Score=92.81 Aligned_cols=204 Identities=12% Similarity=0.078 Sum_probs=123.8
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc--ccEEEEEEeCCCceEEccCCCCC
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL--NRTAEIYSLGGAAWRKVGNAPWS 269 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~--~~~~eVyss~t~~Wr~~~~~p~~ 269 (476)
..+..+||.+.+|..+|+++. . ... ..+..+ +=||+++.+.+.. ...+++|+..+++|..++..|.
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~-~---R~~--~~~~~~-----~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~- 387 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIK-N---RCR--FSLAVI-----DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPI- 387 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcc-h---hhc--eeEEEE-----CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCc-
Confidence 358899999999999998764 1 111 111122 1266666553211 3479999999999999886653
Q ss_pred CccCccceEEcceEEEEEeeccCC----------------CCCcceEEEEECCCceEEEEc-CCCCCCCCCCccCCccee
Q 011826 270 PIAGLFPTYLNGVIHWVCDDIEDD----------------QSCSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDM 332 (476)
Q Consensus 270 ~~~~~~~v~~~G~lywl~~~~~~~----------------~~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~ 332 (476)
+......+.++|.+|-+....... ......+.+||+.+++|+.++ +|.... ..
T Consensus 388 ~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~----------~~ 457 (557)
T PHA02713 388 ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI----------RP 457 (557)
T ss_pred ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc----------cC
Confidence 222236778899999987531100 001246999999999999874 333221 34
Q ss_pred eEEeeCCeEEEEecCCCCCeEEEeeccCCC-C-cceEEEEEEeCCCcceeeEEEEecCCcEEEEecC---CEEEEEeCCC
Q 011826 333 NLGVLGGCLSICDVTYFAPPDIWVMKDYGV-Q-ESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKR---RALVLYNPVE 407 (476)
Q Consensus 333 ~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~-~-~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~---~~l~~ydl~t 407 (476)
.+++++|+|+++..........=..+-|.. . ..|+..-.++..... .-+ ..-+|.|++.... ..+-.||+.|
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~-~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHT-ILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--cee-EEECCEEEEEeeecceeehhhcCccc
Confidence 578899999988652221110101222332 3 479987655542211 111 2335677766432 2578999999
Q ss_pred CcEEEEEEeeCCC
Q 011826 408 KNTRYLLIHEDQS 420 (476)
Q Consensus 408 ~~~~~v~i~g~~~ 420 (476)
++|..+.-+....
T Consensus 535 ~~W~~~~~~~~~~ 547 (557)
T PHA02713 535 YEWNHICHQHSNS 547 (557)
T ss_pred ccccchhhhcCCc
Confidence 9999887544433
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.64 E-value=5.6e-09 Score=72.25 Aligned_cols=45 Identities=33% Similarity=0.496 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHhcCCccccceeeccchhhhhhhCChHHHHHHh
Q 011826 49 IIDLPSHILIDILSRLPLKSIFISRCVCKTWHILISDPLFATLHF 93 (476)
Q Consensus 49 ~~~LP~Dll~eIL~RLP~ksL~R~r~VCK~W~~lissp~F~~~~~ 93 (476)
|..||+|++.+||.+||++++++++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999998876553
No 8
>PLN02193 nitrile-specifier protein
Probab=98.56 E-value=4.6e-05 Score=79.40 Aligned_cols=208 Identities=7% Similarity=-0.054 Sum_probs=119.1
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCc--cccEEEEEEeCCCceEEccCCCCC
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDF--LNRTAEIYSLGGAAWRKVGNAPWS 269 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~--~~~~~eVyss~t~~Wr~~~~~p~~ 269 (476)
..++++||.+.+|..+|+... .+. .......+..++ =+++++...+. ....+++|++.+++|+.+......
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~-~P~-~~~~~~~~v~~~-----~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~ 265 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGD-VPH-LSCLGVRMVSIG-----STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG 265 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCC-CCC-CcccceEEEEEC-----CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC
Confidence 358999999999998875321 011 001011111111 14555533211 135689999999999998754211
Q ss_pred C--ccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecC
Q 011826 270 P--IAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVT 347 (476)
Q Consensus 270 ~--~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~ 347 (476)
+ ......+..++.+|.+.... .......+.+||+.+.+|..++.|...... +....++..+|+++++...
T Consensus 266 P~~R~~h~~~~~~~~iYv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~------R~~~~~~~~~gkiyviGG~ 337 (470)
T PLN02193 266 PTPRSFHSMAADEENVYVFGGVS--ATARLKTLDSYNIVDKKWFHCSTPGDSFSI------RGGAGLEVVQGKVWVVYGF 337 (470)
T ss_pred CCCccceEEEEECCEEEEECCCC--CCCCcceEEEEECCCCEEEeCCCCCCCCCC------CCCcEEEEECCcEEEEECC
Confidence 2 22225567889999886431 111233689999999999988765332211 1134466778999877542
Q ss_pred CC-CCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecC---------------CEEEEEeCCCCcEE
Q 011826 348 YF-APPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKR---------------RALVLYNPVEKNTR 411 (476)
Q Consensus 348 ~~-~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~---------------~~l~~ydl~t~~~~ 411 (476)
.. ..-++|+.+-. ...|++.-.+...+........+.-++.|++.... ..++.||+++++++
T Consensus 338 ~g~~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 338 NGCEVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred CCCccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 21 12567877643 36899875442111111111122334566655321 24899999999999
Q ss_pred EEEEe
Q 011826 412 YLLIH 416 (476)
Q Consensus 412 ~v~i~ 416 (476)
.+...
T Consensus 416 ~~~~~ 420 (470)
T PLN02193 416 RLDKF 420 (470)
T ss_pred EcccC
Confidence 88643
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.54 E-value=5.2e-06 Score=87.99 Aligned_cols=211 Identities=15% Similarity=0.139 Sum_probs=131.7
Q ss_pred EecccceEEEeecCC-----CccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc--cc
Q 011826 176 VNSCNGFLCLRKPFH-----RNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL--NR 248 (476)
Q Consensus 176 ~~s~~GLlcl~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~--~~ 248 (476)
++..+|.|-+..+.. -+....+||.+.+|..+|++.. ....++++. -..+|+++.+.+.. ..
T Consensus 328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-------~R~~~~v~~----l~g~iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-------KRSDFGVAV----LDGKLYAVGGFDGEKSLN 396 (571)
T ss_pred EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC-------ccccceeEE----ECCEEEEEeccccccccc
Confidence 344455554443222 2468999999999999999875 111222221 24566666554322 45
Q ss_pred EEEEEEeCCCceEEccCCCCCCccCccceEEcceEEEEEeeccCCCC-CcceEEEEECCCceEEEE-cCCCCCCCCCCcc
Q 011826 249 TAEIYSLGGAAWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQS-CSDCIVGFDFEDERFCVI-PAPPHFAEKPKTR 326 (476)
Q Consensus 249 ~~eVyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~-~~~~Il~fD~~~e~f~~i-~lP~~~~~~~~~~ 326 (476)
.+|.|+..++.|..++..+. .......+.++|.+|-+.... +.. .-..+.+||+.+++|+.+ +++....
T Consensus 397 svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~--~~~~~l~sve~YDP~t~~W~~~~~M~~~R~------ 467 (571)
T KOG4441|consen 397 SVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGD--GSSNCLNSVECYDPETNTWTLIAPMNTRRS------ 467 (571)
T ss_pred cEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcC--CCccccceEEEEcCCCCceeecCCcccccc------
Confidence 79999999999999997664 333337889999999998642 112 335899999999999987 4444322
Q ss_pred CCcceeeEEeeCCeEEEEecCCCCCeEEEeeccCCC-CcceEEEEEEeCCCcceeeEEEEecCCcEEEEe------cCCE
Q 011826 327 DNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYGV-QESWIKQLSVDNGYFGICRPIKYLDDGSLLLFC------KRRA 399 (476)
Q Consensus 327 ~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~-~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~------~~~~ 399 (476)
...++.++|+|+++....+ .-.+=..+-|.. ...|+..-.+...... .-....++.+++.. .-..
T Consensus 468 ----~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~rs~---~g~~~~~~~ly~vGG~~~~~~l~~ 539 (571)
T KOG4441|consen 468 ----GFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPRSA---VGVVVLGGKLYAVGGFDGNNNLNT 539 (571)
T ss_pred ----cceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCcccccc---ccEEEECCEEEEEecccCccccce
Confidence 4448899999999876332 211111222221 5789987434332111 11122334554442 2357
Q ss_pred EEEEeCCCCcEEEEE
Q 011826 400 LVLYNPVEKNTRYLL 414 (476)
Q Consensus 400 l~~ydl~t~~~~~v~ 414 (476)
+-.||+++++|+...
T Consensus 540 ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 540 VECYDPETDTWTEVT 554 (571)
T ss_pred eEEcCCCCCceeeCC
Confidence 899999999998875
No 10
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.52 E-value=2.6e-08 Score=66.28 Aligned_cols=39 Identities=41% Similarity=0.622 Sum_probs=36.8
Q ss_pred CCHHHHHHHHhcCCccccceeeccchhhhhhhCChHHHH
Q 011826 52 LPSHILIDILSRLPLKSIFISRCVCKTWHILISDPLFAT 90 (476)
Q Consensus 52 LP~Dll~eIL~RLP~ksL~R~r~VCK~W~~lissp~F~~ 90 (476)
||+|++.+||.+|++++++++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999987754
No 11
>PHA03098 kelch-like protein; Provisional
Probab=98.51 E-value=3e-05 Score=82.32 Aligned_cols=194 Identities=9% Similarity=0.084 Sum_probs=118.9
Q ss_pred cEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc--ccEEEEEEeCCCceEEccCCCCCC
Q 011826 193 PCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL--NRTAEIYSLGGAAWRKVGNAPWSP 270 (476)
Q Consensus 193 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~--~~~~eVyss~t~~Wr~~~~~p~~~ 270 (476)
.++.+||.|++|..+|+++. +.. ....+ ..+ =+|+++.+.+.. ...+++|+..+++|+..+..|. +
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~---~R~-~~~~~--~~~-----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~ 379 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIY---PRK-NPGVT--VFN-----NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-P 379 (534)
T ss_pred cEEEEeCCCCeeeECCCCCc---ccc-cceEE--EEC-----CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-C
Confidence 68999999999999998763 111 11111 111 245555443211 4568999999999999876552 2
Q ss_pred ccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc-CCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCC
Q 011826 271 IAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYF 349 (476)
Q Consensus 271 ~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~ 349 (476)
......+.++|.+|-+.....++ .....+..||+.+++|..++ +|.... ....+..+|+|+++.....
T Consensus 380 r~~~~~~~~~~~iYv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~p~~r~----------~~~~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 380 RYNPCVVNVNNLIYVIGGISKND-ELLKTVECFSLNTNKWSKGSPLPISHY----------GGCAIYHDGKIYVIGGISY 448 (534)
T ss_pred CccceEEEECCEEEEECCcCCCC-cccceEEEEeCCCCeeeecCCCCcccc----------CceEEEECCEEEEECCccC
Confidence 23336678899999987531111 12347999999999999874 343221 2335677899988764211
Q ss_pred C-----CeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEec------CCEEEEEeCCCCcEEEEE
Q 011826 350 A-----PPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCK------RRALVLYNPVEKNTRYLL 414 (476)
Q Consensus 350 ~-----~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~------~~~l~~ydl~t~~~~~v~ 414 (476)
. .-.+|+.+-. ...|+..-.++...... .+. .-+|.|++... ...+..||+++++|+.+.
T Consensus 449 ~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r~~~--~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 449 IDNIKVYNIVESYNPV--TNKWTELSSLNFPRINA--SLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCCCcccceEEEecCC--CCceeeCCCCCcccccc--eEE-EECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 1 1236666543 46899764333221111 112 22567766542 246899999999998775
No 12
>PLN02153 epithiospecifier protein
Probab=98.51 E-value=6.6e-05 Score=74.95 Aligned_cols=209 Identities=8% Similarity=-0.042 Sum_probs=115.6
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc--ccEEEEEEeCCCceEEccCCCC-
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL--NRTAEIYSLGGAAWRKVGNAPW- 268 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~--~~~~eVyss~t~~Wr~~~~~p~- 268 (476)
..++++||.+.+|..+|+... .+. ..........+ .=||+++...... ...+++|+..+++|+.+.....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~-~p~-~~~~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGD-VPR-ISCLGVRMVAV-----GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred CcEEEEECCCCEEEEcCccCC-CCC-CccCceEEEEE-----CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCC
Confidence 368999999999999887532 111 10001111111 1246666432111 3468999999999998864311
Q ss_pred ---CCccCccceEEcceEEEEEeeccCCC----CCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeE
Q 011826 269 ---SPIAGLFPTYLNGVIHWVCDDIEDDQ----SCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCL 341 (476)
Q Consensus 269 ---~~~~~~~~v~~~G~lywl~~~~~~~~----~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L 341 (476)
.+......+..+|.+|-+.....++. ..-..+.+||+.+.+|..++.+...... +....++..+|+|
T Consensus 123 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~------r~~~~~~~~~~~i 196 (341)
T PLN02153 123 GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEK------RGGAGFAVVQGKI 196 (341)
T ss_pred CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCC------CCcceEEEECCeE
Confidence 11222256788999998865311110 0113688999999999987643211111 1133466789999
Q ss_pred EEEecCC----------CCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecC--------------
Q 011826 342 SICDVTY----------FAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKR-------------- 397 (476)
Q Consensus 342 ~~~~~~~----------~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~-------------- 397 (476)
+++.... ...-++|+.+-. ...|+++-.....+........+.-++.|++....
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 274 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTL 274 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccc
Confidence 8864311 001246665433 36799875432111111111112223555554321
Q ss_pred -CEEEEEeCCCCcEEEEEE
Q 011826 398 -RALVLYNPVEKNTRYLLI 415 (476)
Q Consensus 398 -~~l~~ydl~t~~~~~v~i 415 (476)
..++.||+++++++.+..
T Consensus 275 ~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 275 SNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccEEEEEcCccEEEeccC
Confidence 268999999999998864
No 13
>PHA02713 hypothetical protein; Provisional
Probab=98.44 E-value=3e-05 Score=82.33 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=117.7
Q ss_pred cEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCc---cccEEEEEEeCCCceEEccCCCCC
Q 011826 193 PCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDF---LNRTAEIYSLGGAAWRKVGNAPWS 269 (476)
Q Consensus 193 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~---~~~~~eVyss~t~~Wr~~~~~p~~ 269 (476)
.+..+||.+++|..+++++. . . ... ..... +=+|+++.+... ....++.|+..++.|..++..+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~-~---r-~~~-~~a~l-----~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~- 340 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN-H---I-INY-ASAIV-----DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK- 340 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc-c---c-cce-EEEEE-----CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc-
Confidence 46789999999999998764 1 1 111 11111 125666654321 13578999999999998876552
Q ss_pred CccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc-CCCCCCCCCCccCCcceeeEEeeCCeEEEEecCC
Q 011826 270 PIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTY 348 (476)
Q Consensus 270 ~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~ 348 (476)
+......+.++|.+|-+.... +......+-+||+.+++|..++ +|.... ....+.++|+|+++....
T Consensus 341 ~R~~~~~~~~~g~IYviGG~~--~~~~~~sve~Ydp~~~~W~~~~~mp~~r~----------~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQN--GTNVERTIECYTMGDDKWKMLPDMPIALS----------SYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred hhhceeEEEECCEEEEECCcC--CCCCCceEEEEECCCCeEEECCCCCcccc----------cccEEEECCEEEEEeCCC
Confidence 222337788999999998641 1122346999999999999874 343322 334678899999886521
Q ss_pred CC--------------------CeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecC-------CEEE
Q 011826 349 FA--------------------PPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKR-------RALV 401 (476)
Q Consensus 349 ~~--------------------~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~-------~~l~ 401 (476)
.. .-.+.+.+-. ...|+..-.+..... .+-...-+|.|++.... ..+.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m~~~r~---~~~~~~~~~~IYv~GG~~~~~~~~~~ve 483 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNFWTGTI---RPGVVSHKDDIYVVCDIKDEKNVKTCIF 483 (557)
T ss_pred cccccccccccccccccccccccceEEEECCC--CCeEeecCCCCcccc---cCcEEEECCEEEEEeCCCCCCccceeEE
Confidence 11 0123333211 467987654433221 11223345677666421 2467
Q ss_pred EEeCCC-CcEEEEE
Q 011826 402 LYNPVE-KNTRYLL 414 (476)
Q Consensus 402 ~ydl~t-~~~~~v~ 414 (476)
.||+++ ++|+.+.
T Consensus 484 ~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 484 RYNTNTYNGWELIT 497 (557)
T ss_pred EecCCCCCCeeEcc
Confidence 999999 7998775
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.39 E-value=2.3e-05 Score=83.08 Aligned_cols=196 Identities=13% Similarity=0.120 Sum_probs=125.6
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcC---ccccEEEEEEeCCCceEEccCCCC
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDD---FLNRTAEIYSLGGAAWRKVGNAPW 268 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~---~~~~~~eVyss~t~~Wr~~~~~p~ 268 (476)
..+-.+||.+++|..+.+++.. . . ..+.+.-. -+|+++.+.+ .....+++|++.++.|..++....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~---r--~--~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~ 369 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSP---R--C--RVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT 369 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcc---c--c--cccEEEEC----CEEEEEccccCCCcccceEEEecCCCCceeccCCccC
Confidence 3577899999999999988751 1 1 12222211 1666665544 125689999999999999775442
Q ss_pred CCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc-CCCCCCCCCCccCCcceeeEEeeCCeEEEEecC
Q 011826 269 SPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDMNLGVLGGCLSICDVT 347 (476)
Q Consensus 269 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~ 347 (476)
.......+.++|.+|-+.... +...-..|-.||..+++|..+. ++.. . .....++++|+||++...
T Consensus 370 -~R~~~~v~~l~g~iYavGG~d--g~~~l~svE~YDp~~~~W~~va~m~~~-r---------~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 370 -KRSDFGVAVLDGKLYAVGGFD--GEKSLNSVECYDPVTNKWTPVAPMLTR-R---------SGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred -ccccceeEEECCEEEEEeccc--cccccccEEEecCCCCcccccCCCCcc-e---------eeeEEEEECCEEEEEcCc
Confidence 222227789999999998662 3344457999999999999885 5542 1 255678999999998763
Q ss_pred CCCCeEEEeeccCCC-CcceEEEEEEeCCCcceeeEEEEecCCcEEEEec------CCEEEEEeCCCCcEEEEE
Q 011826 348 YFAPPDIWVMKDYGV-QESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCK------RRALVLYNPVEKNTRYLL 414 (476)
Q Consensus 348 ~~~~l~IWvl~~~~~-~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~------~~~l~~ydl~t~~~~~v~ 414 (476)
....-.+=.++-|.. ...|+..-.+...+... .++ .-+|.|+.... -..+-.||+++++|..+.
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~--g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF--GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccc--eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 322212222222322 57899876665532221 122 22345555532 234788999999998885
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.36 E-value=0.00011 Score=73.58 Aligned_cols=217 Identities=9% Similarity=0.001 Sum_probs=118.9
Q ss_pred ccceEEEeecCCCccEEEEcc--cccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCc--------ccc
Q 011826 179 CNGFLCLRKPFHRNPCIICNP--ITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDF--------LNR 248 (476)
Q Consensus 179 ~~GLlcl~~~~~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~--------~~~ 248 (476)
.++-|.+........+++.++ .+++|..+|+++. . .+ ... .....+ =+|+++..... ...
T Consensus 16 ~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~-~-~R-~~~--~~~~~~-----~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 16 IGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPG-G-PR-NQA--VAAAID-----GKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred ECCEEEEEccccCCeeEEEECCCCCCCceECCCCCC-C-Cc-ccc--eEEEEC-----CEEEEEeCCCCCCCCCcceecc
Confidence 344444433222245777774 6788999998752 0 11 111 111111 25666644211 124
Q ss_pred EEEEEEeCCCceEEccCCCCCCccCccce-EEcceEEEEEeeccCC--------------------------------CC
Q 011826 249 TAEIYSLGGAAWRKVGNAPWSPIAGLFPT-YLNGVIHWVCDDIEDD--------------------------------QS 295 (476)
Q Consensus 249 ~~eVyss~t~~Wr~~~~~p~~~~~~~~~v-~~~G~lywl~~~~~~~--------------------------------~~ 295 (476)
.++.|+..+++|+.+..+.........++ .++|.+|-+....... ..
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 68999999999999874221121111233 5899999886431000 00
Q ss_pred CcceEEEEECCCceEEEEc-CCCCCCCCCCccCCcceeeEEeeCCeEEEEecCC---CCCeEEEeeccCCCCcceEEEEE
Q 011826 296 CSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTY---FAPPDIWVMKDYGVQESWIKQLS 371 (476)
Q Consensus 296 ~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~---~~~l~IWvl~~~~~~~~W~~~~~ 371 (476)
....+.+||+.+++|+.++ +|.... ....++..+|+|+++.... ....++|+.+-......|+..-.
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p~~~r---------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENPFLGT---------AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred ccceEEEEECCCCceeECccCCCCcC---------CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 0147999999999999984 443211 1344677899999885422 12356776542111468998765
Q ss_pred EeCCCc----ceeeEEEEecCCcEEEEecC-----------------------CEEEEEeCCCCcEEEEE
Q 011826 372 VDNGYF----GICRPIKYLDDGSLLLFCKR-----------------------RALVLYNPVEKNTRYLL 414 (476)
Q Consensus 372 I~~~~~----~~~~p~~~~~~g~il~~~~~-----------------------~~l~~ydl~t~~~~~v~ 414 (476)
++..+. .......+.-+|+|++.... ..+-.||+++++++.+.
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 543211 11111122345677665321 13568888888887764
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=98.27 E-value=0.00016 Score=75.60 Aligned_cols=183 Identities=16% Similarity=0.126 Sum_probs=114.2
Q ss_pred cEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCCCceEEccCCCCCCcc
Q 011826 193 PCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAAWRKVGNAPWSPIA 272 (476)
Q Consensus 193 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t~~Wr~~~~~p~~~~~ 272 (476)
....+||.+++|..+|+++. ++. . ..+... +-+|+++.+.+ ....++.|+..+++|..++..|. +..
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~---~r~-~--~~~v~~-----~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~-~r~ 354 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNS---PRL-Y--ASGVPA-----NNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLK-PRC 354 (480)
T ss_pred eEEEEECCCCEEEECCCCCc---hhh-c--ceEEEE-----CCEEEEECCcC-CCCceEEEECCCCeEEECCCCCC-CCc
Confidence 47789999999999998764 111 1 111111 22566665432 12468999999999999886652 222
Q ss_pred CccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCe
Q 011826 273 GLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPP 352 (476)
Q Consensus 273 ~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l 352 (476)
...++.++|.+|-+.... +. ...+..||+.+++|+.++.++... .....+.++|+|+++.. ..
T Consensus 355 ~~~~~~~~g~IYviGG~~--~~--~~~ve~ydp~~~~W~~~~~m~~~r---------~~~~~~~~~~~IYv~GG----~~ 417 (480)
T PHA02790 355 NPAVASINNVIYVIGGHS--ET--DTTTEYLLPNHDQWQFGPSTYYPH---------YKSCALVFGRRLFLVGR----NA 417 (480)
T ss_pred ccEEEEECCEEEEecCcC--CC--CccEEEEeCCCCEEEeCCCCCCcc---------ccceEEEECCEEEEECC----ce
Confidence 337788999999987541 11 236889999999999985443222 13346788999998753 22
Q ss_pred EEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEec------CCEEEEEeCCCCcEEE
Q 011826 353 DIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCK------RRALVLYNPVEKNTRY 412 (476)
Q Consensus 353 ~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~------~~~l~~ydl~t~~~~~ 412 (476)
++.- .. ...|+..-.++..+.. .-...-+|+|++... ...+-.||+++++|..
T Consensus 418 e~yd---p~-~~~W~~~~~m~~~r~~---~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 418 EFYC---ES-SNTWTLIDDPIYPRDN---PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEec---CC-CCcEeEcCCCCCCccc---cEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 3322 22 4689976544332211 112233567766542 1467899999998864
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.15 E-value=0.00058 Score=69.11 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=119.7
Q ss_pred ecccceEEEeecCCCccEEEEccc--ccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCc--------c
Q 011826 177 NSCNGFLCLRKPFHRNPCIICNPI--TGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDF--------L 246 (476)
Q Consensus 177 ~s~~GLlcl~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~--------~ 246 (476)
+..++-|.+........++++++. +++|..+|+.+. . .+. . ......+ =+|+++..... .
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~-~-~r~-~--~~~v~~~-----~~IYV~GG~~~~~~~~~~~~ 104 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPG-G-PRE-Q--AVAAFID-----GKLYVFGGIGKTNSEGSPQV 104 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCC-C-Ccc-c--ceEEEEC-----CEEEEEcCCCCCCCCCceeE
Confidence 445565544433223457788765 578999997652 1 111 1 1111111 13445433211 0
Q ss_pred ccEEEEEEeCCCceEEccCCCCCCccCccceE-EcceEEEEEeeccC---C-----------------------------
Q 011826 247 NRTAEIYSLGGAAWRKVGNAPWSPIAGLFPTY-LNGVIHWVCDDIED---D----------------------------- 293 (476)
Q Consensus 247 ~~~~eVyss~t~~Wr~~~~~p~~~~~~~~~v~-~~G~lywl~~~~~~---~----------------------------- 293 (476)
...+++|+..+++|+.+............++. .+|.+|-+...... +
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 24689999999999998742112211113343 79999998753110 0
Q ss_pred CCCcceEEEEECCCceEEEEc-CCCCCCCCCCccCCcceeeEEeeCCeEEEEecC---CCCCeEEEeeccCCCCcceEEE
Q 011826 294 QSCSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDMNLGVLGGCLSICDVT---YFAPPDIWVMKDYGVQESWIKQ 369 (476)
Q Consensus 294 ~~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~---~~~~l~IWvl~~~~~~~~W~~~ 369 (476)
......+..||+.+++|..+. +|..... ...++..+++|+++... .....++|..+-......|++.
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~~~---------~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~ 255 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNAGESPFLGTA---------GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKL 255 (376)
T ss_pred cCcCceEEEEECCCCeeeECCcCCCCCCC---------cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeec
Confidence 001247999999999999874 4432211 33466778999987642 1234677766422224789987
Q ss_pred EEEeCCCc-----ceeeEEEEecCCcEEEEecC-----------------------CEEEEEeCCCCcEEEEE
Q 011826 370 LSVDNGYF-----GICRPIKYLDDGSLLLFCKR-----------------------RALVLYNPVEKNTRYLL 414 (476)
Q Consensus 370 ~~I~~~~~-----~~~~p~~~~~~g~il~~~~~-----------------------~~l~~ydl~t~~~~~v~ 414 (476)
..++..+. .........-++.|++.... ..+-.||+++++|+.+.
T Consensus 256 ~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 256 PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 66543211 11111122345566665321 12347999999998765
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.11 E-value=0.0014 Score=64.85 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=111.6
Q ss_pred cEEEE-ccccc-ceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc--ccEEEEEEeCCCce----EEcc
Q 011826 193 PCIIC-NPITG-EYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL--NRTAEIYSLGGAAW----RKVG 264 (476)
Q Consensus 193 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~--~~~~eVyss~t~~W----r~~~ 264 (476)
.+++. +|... +|..+++++. +.. . ..+..++ =+|+++...+.. ...++.|+..++.| +.++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~---~r~-~--~~~~~~~-----~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~ 108 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPY---EAA-Y--GASVSVE-----NGIYYIGGSNSSERFSSVYRITLDESKEELICETIG 108 (323)
T ss_pred eeEEEecCCCceeEEEcccCCc---ccc-c--eEEEEEC-----CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC
Confidence 46666 45433 6888887653 111 1 1112221 145555432211 35788899999988 4554
Q ss_pred CCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc-CCCCCCCCCCccCCcceeeEEeeCCeEEE
Q 011826 265 NAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDMNLGVLGGCLSI 343 (476)
Q Consensus 265 ~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~~L~~~~G~L~~ 343 (476)
..|. +.....++.++|.+|-+..... ......+.+||+.+++|..++ +|..... ....+..+|+|++
T Consensus 109 ~lp~-~~~~~~~~~~~~~iYv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~~r~---------~~~~~~~~~~iYv 176 (323)
T TIGR03548 109 NLPF-TFENGSACYKDGTLYVGGGNRN--GKPSNKSYLFNLETQEWFELPDFPGEPRV---------QPVCVKLQNELYV 176 (323)
T ss_pred CCCc-CccCceEEEECCEEEEEeCcCC--CccCceEEEEcCCCCCeeECCCCCCCCCC---------cceEEEECCEEEE
Confidence 4332 2222366788999999875311 122347999999999999985 5643221 3345678899998
Q ss_pred EecCC-CCCeEEEeeccCCCCcceEEEEEEeCCC--cce-eeEEEEecCCcEEEEec-----------------------
Q 011826 344 CDVTY-FAPPDIWVMKDYGVQESWIKQLSVDNGY--FGI-CRPIKYLDDGSLLLFCK----------------------- 396 (476)
Q Consensus 344 ~~~~~-~~~l~IWvl~~~~~~~~W~~~~~I~~~~--~~~-~~p~~~~~~g~il~~~~----------------------- 396 (476)
+.... ....++|+.+-. ...|++.-.+.... ... ........++.|++...
T Consensus 177 ~GG~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 254 (323)
T TIGR03548 177 FGGGSNIAYTDGYKYSPK--KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKG 254 (323)
T ss_pred EcCCCCccccceEEEecC--CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhh
Confidence 86522 122456666533 36898764332111 000 01112233456665521
Q ss_pred ---------------CCEEEEEeCCCCcEEEEE
Q 011826 397 ---------------RRALVLYNPVEKNTRYLL 414 (476)
Q Consensus 397 ---------------~~~l~~ydl~t~~~~~v~ 414 (476)
...+..||+++++|..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 255 YKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred hHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 146899999999998875
No 19
>PLN02153 epithiospecifier protein
Probab=98.07 E-value=0.0011 Score=66.18 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=94.1
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCc--------cccEEEEEEeCCCceEEc
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDF--------LNRTAEIYSLGGAAWRKV 263 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~--------~~~~~eVyss~t~~Wr~~ 263 (476)
..++++||.|.+|..++++.....+.... ..+.... +=|++++..... ....+++|+..+++|+.+
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~--~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l 174 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEART--FHSMASD----ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL 174 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCce--eeEEEEE----CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeC
Confidence 36899999999999998652100000111 1111111 114555533211 123689999999999998
Q ss_pred cCCCCCC--ccCccceEEcceEEEEEeecc----CC--CCCcceEEEEECCCceEEEEcC----CCCCCCCCCccCCcce
Q 011826 264 GNAPWSP--IAGLFPTYLNGVIHWVCDDIE----DD--QSCSDCIVGFDFEDERFCVIPA----PPHFAEKPKTRDNLYD 331 (476)
Q Consensus 264 ~~~p~~~--~~~~~~v~~~G~lywl~~~~~----~~--~~~~~~Il~fD~~~e~f~~i~l----P~~~~~~~~~~~~~~~ 331 (476)
......+ ......+.++|.+|-+..... .+ ......+.+||+.+.+|..++. |.... .
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~----------~ 244 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS----------V 244 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc----------e
Confidence 7543111 111255778999998753210 00 0112469999999999998852 32211 3
Q ss_pred eeEEeeCCeEEEEecCC---------CC--CeEEEeeccCCCCcceEEEEE
Q 011826 332 MNLGVLGGCLSICDVTY---------FA--PPDIWVMKDYGVQESWIKQLS 371 (476)
Q Consensus 332 ~~L~~~~G~L~~~~~~~---------~~--~l~IWvl~~~~~~~~W~~~~~ 371 (476)
...+.++++|+++.... .. .-++|+++-. ...|++...
T Consensus 245 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~~W~~~~~ 293 (341)
T PLN02153 245 FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TLVWEKLGE 293 (341)
T ss_pred eeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--ccEEEeccC
Confidence 34567788998875521 01 1279999754 368997653
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=97.99 E-value=0.00043 Score=72.35 Aligned_cols=139 Identities=9% Similarity=-0.020 Sum_probs=89.7
Q ss_pred ecccceEEEeecC-CCccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEe
Q 011826 177 NSCNGFLCLRKPF-HRNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSL 255 (476)
Q Consensus 177 ~s~~GLlcl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss 255 (476)
++.+|-|.+..+. ....+..++|.+.+|..+|+++. . . . ...+..+ +=+|.++.+.+.....+++|+.
T Consensus 315 v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~-~--r--~-~~~~~~~-----~g~IYviGG~~~~~~~ve~ydp 383 (480)
T PHA02790 315 VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK-P--R--C-NPAVASI-----NNVIYVIGGHSETDTTTEYLLP 383 (480)
T ss_pred EEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC-C--C--c-ccEEEEE-----CCEEEEecCcCCCCccEEEEeC
Confidence 4456665444331 12357789999999999999774 1 1 1 1112222 2256666443322356899999
Q ss_pred CCCceEEccCCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEE
Q 011826 256 GGAAWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLG 335 (476)
Q Consensus 256 ~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~ 335 (476)
.++.|..++..+. +......+.++|.+|-+.. ..-.||+.+++|+.++..+... ....++
T Consensus 384 ~~~~W~~~~~m~~-~r~~~~~~~~~~~IYv~GG----------~~e~ydp~~~~W~~~~~m~~~r---------~~~~~~ 443 (480)
T PHA02790 384 NHDQWQFGPSTYY-PHYKSCALVFGRRLFLVGR----------NAEFYCESSNTWTLIDDPIYPR---------DNPELI 443 (480)
T ss_pred CCCEEEeCCCCCC-ccccceEEEECCEEEEECC----------ceEEecCCCCcEeEcCCCCCCc---------cccEEE
Confidence 9999999876552 2222366789999998752 3567999999999885322211 244578
Q ss_pred eeCCeEEEEec
Q 011826 336 VLGGCLSICDV 346 (476)
Q Consensus 336 ~~~G~L~~~~~ 346 (476)
+++|+|+++..
T Consensus 444 v~~~~IYviGG 454 (480)
T PHA02790 444 IVDNKLLLIGG 454 (480)
T ss_pred EECCEEEEECC
Confidence 89999998865
No 21
>PHA03098 kelch-like protein; Provisional
Probab=97.87 E-value=0.00091 Score=71.05 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=113.7
Q ss_pred EEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc---ccEEEEEEeCCCceEEccCCCCCC
Q 011826 194 CIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL---NRTAEIYSLGGAAWRKVGNAPWSP 270 (476)
Q Consensus 194 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~---~~~~eVyss~t~~Wr~~~~~p~~~ 270 (476)
+.-+|+.+++|..++..+. ... ..+... +-+|+.+.+.... ...+..|+..+++|..++..+. +
T Consensus 266 ~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~ 332 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHY-----VYC--FGSVVL-----NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY-P 332 (534)
T ss_pred eeecchhhhhcccccCccc-----ccc--ceEEEE-----CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc-c
Confidence 4557888999988876442 111 011111 1245555432211 2368899999999998876542 2
Q ss_pred ccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc-CCCCCCCCCCccCCcceeeEEeeCCeEEEEecCC-
Q 011826 271 IAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTY- 348 (476)
Q Consensus 271 ~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~- 348 (476)
......+.++|.+|-+..... ......+..||+.+.+|+.++ +|.... ....+..+|+++++....
T Consensus 333 R~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~lp~~r~----------~~~~~~~~~~iYv~GG~~~ 400 (534)
T PHA03098 333 RKNPGVTVFNNRIYVIGGIYN--SISLNTVESWKPGESKWREEPPLIFPRY----------NPCVVNVNNLIYVIGGISK 400 (534)
T ss_pred cccceEEEECCEEEEEeCCCC--CEecceEEEEcCCCCceeeCCCcCcCCc----------cceEEEECCEEEEECCcCC
Confidence 222367888999999875421 122346889999999999874 443321 334567889999875521
Q ss_pred -CC-CeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEec---------CCEEEEEeCCCCcEEEEE
Q 011826 349 -FA-PPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCK---------RRALVLYNPVEKNTRYLL 414 (476)
Q Consensus 349 -~~-~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~---------~~~l~~ydl~t~~~~~v~ 414 (476)
.. .-.+++.+-. ...|++.-.++..... ...+..++.|++... ...+..||+++++|..+.
T Consensus 401 ~~~~~~~v~~yd~~--t~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 401 NDELLKTVECFSLN--TNKWSKGSPLPISHYG---GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CCcccceEEEEeCC--CCeeeecCCCCccccC---ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 11 1345555432 3679976544332211 122334556666532 124899999999998875
No 22
>PLN02193 nitrile-specifier protein
Probab=97.80 E-value=0.0049 Score=64.32 Aligned_cols=163 Identities=10% Similarity=0.020 Sum_probs=96.5
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCc--cccEEEEEEeCCCceEEccCCCCC
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDF--LNRTAEIYSLGGAAWRKVGNAPWS 269 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~--~~~~~eVyss~t~~Wr~~~~~p~~ 269 (476)
+.++++||.|.+|..+++... .+..... .++... +=||+++..... ....+++|+..+++|..+..+...
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~-~P~~R~~---h~~~~~----~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 315 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEE-GPTPRSF---HSMAAD----EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDS 315 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCC-CCCCccc---eEEEEE----CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCC
Confidence 468999999999999987531 1111111 111111 125666643221 134689999999999988753222
Q ss_pred Ccc--CccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecC
Q 011826 270 PIA--GLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVT 347 (476)
Q Consensus 270 ~~~--~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~ 347 (476)
+.. ....+.++|.+|.+.... + .....+..||+.+++|+.++........ +.....+..+++|+++...
T Consensus 316 ~~~R~~~~~~~~~gkiyviGG~~--g-~~~~dv~~yD~~t~~W~~~~~~g~~P~~------R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 316 FSIRGGAGLEVVQGKVWVVYGFN--G-CEVDDVHYYDPVQDKWTQVETFGVRPSE------RSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CCCCCCcEEEEECCcEEEEECCC--C-CccCceEEEECCCCEEEEeccCCCCCCC------cceeEEEEECCEEEEECCc
Confidence 211 125577899999886431 1 1124799999999999988531100000 1133456778899887552
Q ss_pred CC---------CC--eEEEeeccCCCCcceEEEEEEe
Q 011826 348 YF---------AP--PDIWVMKDYGVQESWIKQLSVD 373 (476)
Q Consensus 348 ~~---------~~--l~IWvl~~~~~~~~W~~~~~I~ 373 (476)
.. .. -++|+++-. ...|+++..+.
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~--t~~W~~~~~~~ 421 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTE--TLQWERLDKFG 421 (470)
T ss_pred cCCccccccCccceeccEEEEEcC--cCEEEEcccCC
Confidence 11 11 268999754 36899765443
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.74 E-value=0.0012 Score=65.34 Aligned_cols=136 Identities=14% Similarity=0.135 Sum_probs=81.7
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc-ccEEEEEEeCCCceEEccCCCC--
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL-NRTAEIYSLGGAAWRKVGNAPW-- 268 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~-~~~~eVyss~t~~Wr~~~~~p~-- 268 (476)
..++++||.|.+|..+|+.+. .. ... .....++ =||+++...+.. ...+++|+..+++|+.+...+.
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~-~~--r~~--~~~~~~~-----~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 208 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPG-EP--RVQ--PVCVKLQ-----NELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDS 208 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCC-CC--CCc--ceEEEEC-----CEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCC
Confidence 468999999999999987542 11 111 1111221 145555432211 2357899999999999875431
Q ss_pred CCcc--Ccc-ceEEcceEEEEEeeccCC------------------------------CCCcceEEEEECCCceEEEEc-
Q 011826 269 SPIA--GLF-PTYLNGVIHWVCDDIEDD------------------------------QSCSDCIVGFDFEDERFCVIP- 314 (476)
Q Consensus 269 ~~~~--~~~-~v~~~G~lywl~~~~~~~------------------------------~~~~~~Il~fD~~~e~f~~i~- 314 (476)
.+.. ... .+..+|.+|-+....... ......+.+||+.+++|+.++
T Consensus 209 ~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 288 (323)
T TIGR03548 209 EPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN 288 (323)
T ss_pred CceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc
Confidence 1211 112 344578898876431000 001247999999999999985
Q ss_pred CCCCCCCCCCccCCcceeeEEeeCCeEEEEec
Q 011826 315 APPHFAEKPKTRDNLYDMNLGVLGGCLSICDV 346 (476)
Q Consensus 315 lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~ 346 (476)
+|.... ....++..+|+|+++..
T Consensus 289 ~p~~~r---------~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 289 SPFFAR---------CGAALLLTGNNIFSING 311 (323)
T ss_pred cccccc---------CchheEEECCEEEEEec
Confidence 442211 13457888999998865
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.66 E-value=0.011 Score=59.88 Aligned_cols=96 Identities=15% Similarity=0.207 Sum_probs=58.2
Q ss_pred cEEEEEEeCCCceEEccCCCCCCccCccceEEcceEEEEEeeccCCC-CCcceEEEEECCCceEEEEc-CCCCCCCCCCc
Q 011826 248 RTAEIYSLGGAAWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQ-SCSDCIVGFDFEDERFCVIP-APPHFAEKPKT 325 (476)
Q Consensus 248 ~~~eVyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~-~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~ 325 (476)
..+++|+..++.|..++..|.........+.++|.+|.+......+. ........||.++.+|..++ +|........
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~- 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ- 267 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC-
Confidence 46899999999999988655222223356778999999986422111 11123456778899999873 5543221100
Q ss_pred cCCc-ceeeEEeeCCeEEEEec
Q 011826 326 RDNL-YDMNLGVLGGCLSICDV 346 (476)
Q Consensus 326 ~~~~-~~~~L~~~~G~L~~~~~ 346 (476)
.+ .....+.++|+|+++..
T Consensus 268 --~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 268 --EGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred --CccceEeceeECCEEEEeec
Confidence 00 01224567889988754
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.50 E-value=0.019 Score=57.34 Aligned_cols=95 Identities=16% Similarity=0.258 Sum_probs=56.2
Q ss_pred cEEEEEEeCCCceEEccCCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEE--ECCCceEEEE-cCCCCCCCCCC
Q 011826 248 RTAEIYSLGGAAWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGF--DFEDERFCVI-PAPPHFAEKPK 324 (476)
Q Consensus 248 ~~~eVyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~f--D~~~e~f~~i-~lP~~~~~~~~ 324 (476)
..+++|+..+++|+.++..|.........+.++|.+|-+......+ .....+..| |..+.+|..+ ++|......+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG-LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC-ccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 4699999999999999865532222225678899999987542111 111234445 4567799877 34432211000
Q ss_pred ccCCcceeeEEeeCCeEEEEec
Q 011826 325 TRDNLYDMNLGVLGGCLSICDV 346 (476)
Q Consensus 325 ~~~~~~~~~L~~~~G~L~~~~~ 346 (476)
.......+.++|+|+++..
T Consensus 247 ---~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 247 ---GLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred ---cccEEeeeEECCEEEEeec
Confidence 0012235678999988754
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.34 E-value=0.002 Score=61.58 Aligned_cols=47 Identities=34% Similarity=0.521 Sum_probs=41.7
Q ss_pred CCCCCC----HHHHHHHHhcCCccccceeeccchhhhhhhCChHHHHHHhh
Q 011826 48 TIIDLP----SHILIDILSRLPLKSIFISRCVCKTWHILISDPLFATLHFD 94 (476)
Q Consensus 48 ~~~~LP----~Dll~eIL~RLP~ksL~R~r~VCK~W~~lissp~F~~~~~~ 94 (476)
.+..|| +++.+.||+.|...+|..|..|||+|+.+++++-..+....
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 445699 99999999999999999999999999999999987766543
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.29 E-value=0.0024 Score=59.11 Aligned_cols=225 Identities=14% Similarity=0.106 Sum_probs=122.2
Q ss_pred ecccceEEEeecCCCccEEEEcccccceeecCCCCCC-CCcCccce------eEEEEeEeCCCCCeEEEEEEE--cCcc-
Q 011826 177 NSCNGFLCLRKPFHRNPCIICNPITGEYVTIPKPAAE-DDKKTLRT------VISGFGYSFRSKQYKVLRLVF--DDFL- 246 (476)
Q Consensus 177 ~s~~GLlcl~~~~~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~------~~~~~g~d~~~~~yKVv~~~~--~~~~- 246 (476)
+.|.|-.-=.. ....+.|.|-.+-+|..+||.-.. .....+.. .-....|+. |+..-.. ++++
T Consensus 31 GYCsGedy~~~--~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGGRND~ega 103 (392)
T KOG4693|consen 31 GYCSGEDYDAK--DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGGRNDDEGA 103 (392)
T ss_pred CcccccccccC--CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcCccCcccc
Confidence 44555442222 234689999999999999983221 00000000 001111211 2333222 2222
Q ss_pred ccEEEEEEeCCCceEEccCCCCCCcc--CccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc---CCCCCCC
Q 011826 247 NRTAEIYSLGGAAWRKVGNAPWSPIA--GLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP---APPHFAE 321 (476)
Q Consensus 247 ~~~~eVyss~t~~Wr~~~~~p~~~~~--~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~---lP~~~~~ 321 (476)
...+.-|+.+++.|......-..+-. ..+++.++..+|-+..-..+.+..+..+.+||+.+.+|+.+. .|+.-.+
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD 183 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD 183 (392)
T ss_pred cceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh
Confidence 56788899999999987743212211 125667777788776332222334557999999999999984 4544332
Q ss_pred CCCccCCcceeeEEeeCCeEEEEecCC-----------CCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCc
Q 011826 322 KPKTRDNLYDMNLGVLGGCLSICDVTY-----------FAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGS 390 (476)
Q Consensus 322 ~~~~~~~~~~~~L~~~~G~L~~~~~~~-----------~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~ 390 (476)
.+ .-..++|..++..... ...-+|=.++-. .+.|.....-...+.+-.....+.-+|+
T Consensus 184 FH---------~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvYng~ 252 (392)
T KOG4693|consen 184 FH---------TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVYNGK 252 (392)
T ss_pred hh---------hhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCCcccccceEEEcce
Confidence 21 1233445555543311 112344444422 3578875332222222223334455677
Q ss_pred EEEEe--------cCCEEEEEeCCCCcEEEEEEeeCC
Q 011826 391 LLLFC--------KRRALVLYNPVEKNTRYLLIHEDQ 419 (476)
Q Consensus 391 il~~~--------~~~~l~~ydl~t~~~~~v~i~g~~ 419 (476)
+++.. ....|+.||++|..++.+...|+.
T Consensus 253 ~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 253 MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred EEEecccchhhhhhhcceeecccccchheeeeccCCC
Confidence 66653 235799999999999999887764
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0001 Score=69.46 Aligned_cols=43 Identities=33% Similarity=0.383 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHhcCCccccceeeccchhhhhhhCChHHH
Q 011826 47 STIIDLPSHILIDILSRLPLKSIFISRCVCKTWHILISDPLFA 89 (476)
Q Consensus 47 ~~~~~LP~Dll~eIL~RLP~ksL~R~r~VCK~W~~lissp~F~ 89 (476)
-.|..|||||+..||+.||.|+|+++..|||+|+++.++.+..
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 3488999999999999999999999999999999999886543
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.03 E-value=0.015 Score=54.05 Aligned_cols=138 Identities=12% Similarity=0.146 Sum_probs=85.4
Q ss_pred ccEEEEEEeCCCceEEcc---CCCCCCccCccceEEcceEEEEEeecc-------CCCCCcceEEEEECCCceEEEEcC-
Q 011826 247 NRTAEIYSLGGAAWRKVG---NAPWSPIAGLFPTYLNGVIHWVCDDIE-------DDQSCSDCIVGFDFEDERFCVIPA- 315 (476)
Q Consensus 247 ~~~~eVyss~t~~Wr~~~---~~p~~~~~~~~~v~~~G~lywl~~~~~-------~~~~~~~~Il~fD~~~e~f~~i~l- 315 (476)
...+++++..|-.||.+. .||...-.+ .++.++|.+|-+..+.. ...++.+.|++||+.++.|..-+-
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH-~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~ 234 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFH-TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN 234 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhh-hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC
Confidence 456888999999999987 344322222 66778899999876521 123455689999999999987621
Q ss_pred CCCCCCCCCccCCcceeeEEeeCCeEEEEecCCC----CCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcE
Q 011826 316 PPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYF----APPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSL 391 (476)
Q Consensus 316 P~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~----~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~i 391 (476)
|....+ +..-...+.+|.+++...... .--++|..+.- ...|.+...-...+..-.+..++..++++
T Consensus 235 ~~~P~G-------RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv 305 (392)
T KOG4693|consen 235 TMKPGG-------RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVSGGKV 305 (392)
T ss_pred CcCCCc-------ccccceEEEcceEEEecccchhhhhhhcceeecccc--cchheeeeccCCCCCcccceeEEEECCEE
Confidence 111111 114456778899998865321 12578888754 36798764332222223345556666676
Q ss_pred EEE
Q 011826 392 LLF 394 (476)
Q Consensus 392 l~~ 394 (476)
++.
T Consensus 306 ~LF 308 (392)
T KOG4693|consen 306 YLF 308 (392)
T ss_pred EEe
Confidence 665
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.63 E-value=0.1 Score=51.56 Aligned_cols=211 Identities=11% Similarity=0.097 Sum_probs=108.1
Q ss_pred cEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcC--------c-cccEEEEEEeCCCceEEc
Q 011826 193 PCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDD--------F-LNRTAEIYSLGGAAWRKV 263 (476)
Q Consensus 193 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~--------~-~~~~~eVyss~t~~Wr~~ 263 (476)
.+|++|--+.+|+.+-.+..+ +++. ...+...++. ++.+.+.. + ....+.+|++.++.|..+
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P-~pRs----shq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql 169 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAP-PPRS----SHQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQL 169 (521)
T ss_pred eeeEEeccccceeEeccCCCc-CCCc----cceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccchheee
Confidence 599999999999887644321 1111 1112222221 22221111 1 134688999999999998
Q ss_pred cCC--CCCCccCccceEEcceEEEEEeec--cCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEee-C
Q 011826 264 GNA--PWSPIAGLFPTYLNGVIHWVCDDI--EDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVL-G 338 (476)
Q Consensus 264 ~~~--p~~~~~~~~~v~~~G~lywl~~~~--~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~-~ 338 (476)
... |+ +......|.....|.-+..-+ +.+..+-+.+.+||+.+=+|+.+..+-..... +....+.+. .
T Consensus 170 ~~~g~PS-~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Ptp------RSGcq~~vtpq 242 (521)
T KOG1230|consen 170 EFGGGPS-PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTP------RSGCQFSVTPQ 242 (521)
T ss_pred ccCCCCC-CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCC------CCcceEEecCC
Confidence 843 31 111112333332222221100 00122223699999999999999765431111 112233444 5
Q ss_pred CeEEEEecC----------C-CCCeEEEeeccCC---CCcceEEEEEEeCCCcc-eeeEEEEecCCc-EEEE--e-----
Q 011826 339 GCLSICDVT----------Y-FAPPDIWVMKDYG---VQESWIKQLSVDNGYFG-ICRPIKYLDDGS-LLLF--C----- 395 (476)
Q Consensus 339 G~L~~~~~~----------~-~~~l~IWvl~~~~---~~~~W~~~~~I~~~~~~-~~~p~~~~~~g~-il~~--~----- 395 (476)
|.+++.... . ...-++|+|+... .+..|+++..+...+.. .-.-+.+++++. ++|- +
T Consensus 243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eee 322 (521)
T KOG1230|consen 243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEE 322 (521)
T ss_pred CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccccc
Confidence 656554321 1 1237999997432 24678887666553211 001123444442 2221 1
Q ss_pred -------cCCEEEEEeCCCCcEEEEEEeeCC
Q 011826 396 -------KRRALVLYNPVEKNTRYLLIHEDQ 419 (476)
Q Consensus 396 -------~~~~l~~ydl~t~~~~~v~i~g~~ 419 (476)
-.+-|+.||+..+++.+-++++..
T Consensus 323 eEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~ 353 (521)
T KOG1230|consen 323 EESLSGEFFNDLYFFDLTRNRWSEGQLQGKK 353 (521)
T ss_pred chhhhhhhhhhhhheecccchhhHhhhccCC
Confidence 125689999999988766665543
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.36 E-value=0.74 Score=48.21 Aligned_cols=182 Identities=13% Similarity=0.045 Sum_probs=99.4
Q ss_pred EecccceEEEeecC----CCccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCc---ccc
Q 011826 176 VNSCNGFLCLRKPF----HRNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDF---LNR 248 (476)
Q Consensus 176 ~~s~~GLlcl~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~---~~~ 248 (476)
++.-+.|+++.... .-..++..|+.|++|..+.+... .++......++..| =||+.+.+.+. ...
T Consensus 119 ~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~-~P~~r~~Hs~~~~g-------~~l~vfGG~~~~~~~~n 190 (482)
T KOG0379|consen 119 SAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD-PPPPRAGHSATVVG-------TKLVVFGGIGGTGDSLN 190 (482)
T ss_pred EEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC-CCCCcccceEEEEC-------CEEEEECCccCccccee
Confidence 33335555554421 11379999999999998886543 11112222222221 13444433221 146
Q ss_pred EEEEEEeCCCceEEccCCCCCCccCc-cceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccC
Q 011826 249 TAEIYSLGGAAWRKVGNAPWSPIAGL-FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRD 327 (476)
Q Consensus 249 ~~eVyss~t~~Wr~~~~~p~~~~~~~-~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~ 327 (476)
.++||+..+.+|..+......+.... .++.+-|.-+|+......+...-..+..||+.+.+|..++ +......
T Consensus 191 dl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~----- 264 (482)
T KOG0379|consen 191 DLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPS----- 264 (482)
T ss_pred eeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCC-----
Confidence 79999999999999985433333322 3444444444444332222234447999999998888332 1111111
Q ss_pred CcceeeEEeeCCeEEEEecCCC----CCeEEEeeccCCCCcceEEEEEEe
Q 011826 328 NLYDMNLGVLGGCLSICDVTYF----APPDIWVMKDYGVQESWIKQLSVD 373 (476)
Q Consensus 328 ~~~~~~L~~~~G~L~~~~~~~~----~~l~IWvl~~~~~~~~W~~~~~I~ 373 (476)
.++...++..+..+.+...... ..-++|.++.. ...|.+.....
T Consensus 265 ~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 265 PRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred CcceeeeEEECCEEEEEcCCccccccccccccccccc--ccceeeeeccc
Confidence 1223445555566666654322 24678888754 46899877665
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.29 E-value=2 Score=45.07 Aligned_cols=207 Identities=10% Similarity=0.000 Sum_probs=110.4
Q ss_pred cEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcC---ccccEEEEEEeCCCceEEccCCCCC
Q 011826 193 PCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDD---FLNRTAEIYSLGGAAWRKVGNAPWS 269 (476)
Q Consensus 193 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~---~~~~~~eVyss~t~~Wr~~~~~p~~ 269 (476)
.++|+|-.+..|........ .+........+.++ =+++.+.... .....++.|+..|+.|+........
T Consensus 89 dl~~~d~~~~~w~~~~~~g~-~p~~r~g~~~~~~~-------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~ 160 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGD-EPSPRYGHSLSAVG-------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDP 160 (482)
T ss_pred eeEEeecCCcccccccccCC-CCCcccceeEEEEC-------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCC
Confidence 49999999988776654332 11111111112221 2333332221 1135799999999999988744322
Q ss_pred CccC--ccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecC
Q 011826 270 PIAG--LFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVT 347 (476)
Q Consensus 270 ~~~~--~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~ 347 (476)
+... ...+.++..+|.+......+ .....+.+||+.+.+|..+......... +....++..+++++++...
T Consensus 161 P~~r~~Hs~~~~g~~l~vfGG~~~~~-~~~ndl~i~d~~~~~W~~~~~~g~~P~p------R~gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 161 PPPRAGHSATVVGTKLVVFGGIGGTG-DSLNDLHIYDLETSTWSELDTQGEAPSP------RYGHAMVVVGNKLLVFGGG 233 (482)
T ss_pred CCCcccceEEEECCEEEEECCccCcc-cceeeeeeeccccccceecccCCCCCCC------CCCceEEEECCeEEEEecc
Confidence 2222 24445555566554331111 1345899999999999998654333221 2244577788888877553
Q ss_pred C-C--CCeEEEeeccCCCCcceEEEEEEeC-CCcceeeEEEEecCCcEEEEe--------cCCEEEEEeCCCCcEEEEEE
Q 011826 348 Y-F--APPDIWVMKDYGVQESWIKQLSVDN-GYFGICRPIKYLDDGSLLLFC--------KRRALVLYNPVEKNTRYLLI 415 (476)
Q Consensus 348 ~-~--~~l~IWvl~~~~~~~~W~~~~~I~~-~~~~~~~p~~~~~~g~il~~~--------~~~~l~~ydl~t~~~~~v~i 415 (476)
. . .-=++|.++=.. ..|.+.-...- ..-....... ..+..+++.. ....++.+|++++.+.++.-
T Consensus 234 ~~~~~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 234 DDGDVYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred ccCCceecceEeeeccc--ceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeeeec
Confidence 2 1 226888887443 57874432211 1111112222 2222333331 12457788888888877764
Q ss_pred ee
Q 011826 416 HE 417 (476)
Q Consensus 416 ~g 417 (476)
.+
T Consensus 311 ~~ 312 (482)
T KOG0379|consen 311 VG 312 (482)
T ss_pred cc
Confidence 44
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.95 E-value=0.011 Score=56.26 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHhcC-----CccccceeeccchhhhhhhCChHHHHHHhh
Q 011826 49 IIDLPSHILIDILSRL-----PLKSIFISRCVCKTWHILISDPLFATLHFD 94 (476)
Q Consensus 49 ~~~LP~Dll~eIL~RL-----P~ksL~R~r~VCK~W~~lissp~F~~~~~~ 94 (476)
+..||+||+.+||.+. ...+|.++.+|||.|+-...+|+|-+..+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 4679999999999875 369999999999999999999999877643
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=91.58 E-value=8 Score=38.71 Aligned_cols=138 Identities=9% Similarity=0.098 Sum_probs=76.0
Q ss_pred cEEEEEEeCCCceEEccCCCC-CCccCccceEEc-ceEEEEEeeccC--CCCC-c-ceEEEEECCCceEEEEcCCCCCCC
Q 011826 248 RTAEIYSLGGAAWRKVGNAPW-SPIAGLFPTYLN-GVIHWVCDDIED--DQSC-S-DCIVGFDFEDERFCVIPAPPHFAE 321 (476)
Q Consensus 248 ~~~eVyss~t~~Wr~~~~~p~-~~~~~~~~v~~~-G~lywl~~~~~~--~~~~-~-~~Il~fD~~~e~f~~i~lP~~~~~ 321 (476)
..+.+|+..+++|+.+..+.. .+.....+|.+- |.+|.+..+..+ ...+ . ..+-.||+.+.+|..+.++.....
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 358899999999999885432 222233444444 655444433211 1111 1 138899999999999988865433
Q ss_pred CCCccCCcceeeEEeeCCeEEEEecCCCC------CeEEEeeccCCCCcceEEEEEEeCCCc-ceeeEEEEecCCcEEEE
Q 011826 322 KPKTRDNLYDMNLGVLGGCLSICDVTYFA------PPDIWVMKDYGVQESWIKQLSVDNGYF-GICRPIKYLDDGSLLLF 394 (476)
Q Consensus 322 ~~~~~~~~~~~~L~~~~G~L~~~~~~~~~------~l~IWvl~~~~~~~~W~~~~~I~~~~~-~~~~p~~~~~~g~il~~ 394 (476)
. ..-.++..+..|.+....++. -=+||+.+-. ...|+++..=...+. ..-.-+.+..+|.|++.
T Consensus 178 R-------SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 178 R-------SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred C-------ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 2 133466677777665331111 1456666532 367999754111111 01122344556777776
No 35
>PF13964 Kelch_6: Kelch motif
Probab=91.08 E-value=0.5 Score=32.27 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=30.2
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP 314 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~ 314 (476)
..|.++|.+|.+...... ......+..||+++++|+.++
T Consensus 6 s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred EEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECC
Confidence 678899999999865221 233458999999999999984
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.69 E-value=4.8 Score=38.18 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=78.1
Q ss_pred EEecccceEEEeecCCCccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEE
Q 011826 175 IVNSCNGFLCLRKPFHRNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYS 254 (476)
Q Consensus 175 ~~~s~~GLlcl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVys 254 (476)
+++.-+|=|-+... ..+.+.-.||.++.--.+|.+... ....-....|+.. -+.+. .+..-.++-|+
T Consensus 194 i~atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~------~~gsRriwsdpig----~~wit--twg~g~l~rfd 260 (353)
T COG4257 194 ICATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNAL------KAGSRRIWSDPIG----RAWIT--TWGTGSLHRFD 260 (353)
T ss_pred eEECCCCcEEEEec-cccceEEcccccCCcceecCCCcc------cccccccccCccC----cEEEe--ccCCceeeEeC
Confidence 56666777665543 245688899999988888876531 1111122333321 11222 33356788899
Q ss_pred eCCCceEEccCCCCCCccCccceEEcce-EEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCC
Q 011826 255 LGGAAWRKVGNAPWSPIAGLFPTYLNGV-IHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFA 320 (476)
Q Consensus 255 s~t~~Wr~~~~~p~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~ 320 (476)
..+.+|++-..+-.... ..+++++.. .-|+..- ....|+.||.++++|+++++|....
T Consensus 261 Ps~~sW~eypLPgs~ar--pys~rVD~~grVW~sea------~agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 261 PSVTSWIEYPLPGSKAR--PYSMRVDRHGRVWLSEA------DAGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred cccccceeeeCCCCCCC--cceeeeccCCcEEeecc------ccCceeecCcccceEEEecCCCCCC
Confidence 99999998875532221 155666642 4577532 2348999999999999999987644
No 37
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.53 E-value=16 Score=34.62 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=75.7
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCCceEE-EEcCCCCCCCCCC---ccCCcceeeEEeeCCeEEEEecCC--
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFC-VIPAPPHFAEKPK---TRDNLYDMNLGVLGGCLSICDVTY-- 348 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~-~i~lP~~~~~~~~---~~~~~~~~~L~~~~G~L~~~~~~~-- 348 (476)
..|..||++|+-... +..|+.||+.+++-. ...||........ +.+. -.+.+++-+..|-++....
T Consensus 73 G~vVYngslYY~~~~-------s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~-t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 73 GHVVYNGSLYYNKYN-------SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGY-TDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred CeEEECCcEEEEecC-------CceEEEEECcCCcEEEEEECCccccccccceecCCC-ceEEEEEcCCCEEEEEecCCC
Confidence 678899999998864 348999999999998 7889977654211 1111 1566777777787665432
Q ss_pred CCCeEEEeeccCC--CCcceEEEEEEeCCCcceeeEEEEecCCcEEEEec-----CCEEEEEeCCCCcEEEEEEe
Q 011826 349 FAPPDIWVMKDYG--VQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCK-----RRALVLYNPVEKNTRYLLIH 416 (476)
Q Consensus 349 ~~~l~IWvl~~~~--~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~-----~~~l~~ydl~t~~~~~v~i~ 416 (476)
...|.|=.|+... ..++|.-. +.....+- +|.--|.+..... ....+.||+.+++.+.+.|.
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~--~~k~~~~n----aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTS--YPKRSAGN----AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEec--cCchhhcc----eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 2246666665432 24556532 11110111 1222233333221 23568899998887777654
No 38
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.25 E-value=2.6 Score=35.48 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=52.5
Q ss_pred eEEEEECCCc--eEEEEcCCCCCCCCCCcc----CCcceeeEEeeCCeEEEEecCC---------CCCeEEEeeccC-CC
Q 011826 299 CIVGFDFEDE--RFCVIPAPPHFAEKPKTR----DNLYDMNLGVLGGCLSICDVTY---------FAPPDIWVMKDY-GV 362 (476)
Q Consensus 299 ~Il~fD~~~e--~f~~i~lP~~~~~~~~~~----~~~~~~~L~~~~G~L~~~~~~~---------~~~l~IWvl~~~-~~ 362 (476)
.|+..|+-.+ .++.|+||.......... .-.....++..+|+|-+++... ...+.+|.|... +.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 7899998765 788899998765431110 0012445777899997775521 234999999985 22
Q ss_pred CcceEEEEEEeCC
Q 011826 363 QESWIKQLSVDNG 375 (476)
Q Consensus 363 ~~~W~~~~~I~~~ 375 (476)
...|.+.++++..
T Consensus 87 ~~~W~~d~~v~~~ 99 (131)
T PF07762_consen 87 SWEWKKDCEVDLS 99 (131)
T ss_pred CCCEEEeEEEEhh
Confidence 5789999998873
No 39
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.97 E-value=16 Score=33.68 Aligned_cols=194 Identities=11% Similarity=0.076 Sum_probs=90.0
Q ss_pred ccceEEEeecCCCccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCCC
Q 011826 179 CNGFLCLRKPFHRNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGA 258 (476)
Q Consensus 179 ~~GLlcl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t~ 258 (476)
.+|.+.+.. ....++.+|+.||+...--..+. ..... ... .+-+|++...+ ..+..++..+|
T Consensus 35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~-----~~~~~--~~~-----~~~~v~v~~~~----~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPG-----PISGA--PVV-----DGGRVYVGTSD----GSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEEE--TTSEEEEEETTTSEEEEEEECSS-----CGGSG--EEE-----ETTEEEEEETT----SEEEEEETTTS
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEeeccc-----cccce--eee-----cccccccccce----eeeEecccCCc
Confidence 577776664 34679999999998532222111 00000 011 12233333222 25677776676
Q ss_pred --ceEE-ccCCCCCCccCcc-ceEEcceEEEEEeeccCCCCCcceEEEEECCCceE--EE-EcCCCCCCCCCCccCCcce
Q 011826 259 --AWRK-VGNAPWSPIAGLF-PTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERF--CV-IPAPPHFAEKPKTRDNLYD 331 (476)
Q Consensus 259 --~Wr~-~~~~p~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f--~~-i~lP~~~~~~~~~~~~~~~ 331 (476)
.|+. ....+........ ....++.+|.... ...|.++|+.+.+- .. +..|....... ...+ ..
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~~~~-~~ 166 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGKLLWKYPVGEPRGSSPIS-SFSD-IN 166 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTEEEEEEESSTT-SS--EE-EETT-EE
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEec--------cCcEEEEecCCCcEEEEeecCCCCCCccee-eecc-cc
Confidence 6984 4432222222222 3333555555442 23899999886654 33 22332211000 0000 12
Q ss_pred eeEEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecCCEEEEEeCCCCcEE
Q 011826 332 MNLGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKRRALVLYNPVEKNTR 411 (476)
Q Consensus 332 ~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~~~l~~ydl~t~~~~ 411 (476)
..+...+|.+++... ....+.+ -++. + +..|.+. +. . ........++.+++...++.++.+|++|++..
T Consensus 167 ~~~~~~~~~v~~~~~-~g~~~~~-d~~t-g-~~~w~~~--~~----~-~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 167 GSPVISDGRVYVSSG-DGRVVAV-DLAT-G-EKLWSKP--IS----G-IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEECCTTEEEEECC-TSSEEEE-ETTT-T-EEEEEEC--SS------ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred cceEEECCEEEEEcC-CCeEEEE-ECCC-C-CEEEEec--CC----C-ccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 334444676666654 2222333 2222 1 2346332 11 1 11222334445555556899999999999754
No 40
>PF13964 Kelch_6: Kelch motif
Probab=87.90 E-value=1.1 Score=30.59 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.8
Q ss_pred ccEEEEcccccceeecCCCCC
Q 011826 192 NPCIICNPITGEYVTIPKPAA 212 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~ 212 (476)
+.+.++||.|++|..+|+++.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 579999999999999998764
No 41
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.78 E-value=31 Score=34.34 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc-------ccEEEEE--E--------
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL-------NRTAEIY--S-------- 254 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~-------~~~~eVy--s-------- 254 (476)
....|+++.|+....+|.+... ......+.+| +. |+++...... ...+|++ .
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~p----k~~pisv~VG-----~~--LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~ 154 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSP----KRCPISVSVG-----DK--LYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSP 154 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCC----CcceEEEEeC-----Ce--EEEeeccCccccccCccceeEEEeccccccccccC
Confidence 4589999999999999986531 1122223332 22 4444332111 0144554 3
Q ss_pred eCCCceEEccCCCCCCccC------c--cceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEE---cCCCCC
Q 011826 255 LGGAAWRKVGNAPWSPIAG------L--FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVI---PAPPHF 319 (476)
Q Consensus 255 s~t~~Wr~~~~~p~~~~~~------~--~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i---~lP~~~ 319 (476)
..+-+|+.++.|| +.... . .+|. +|.--|++.. +.. ..-.+||+++.+|+.. .||-.-
T Consensus 155 ~~~w~W~~LP~PP-f~~~~~~~~~~i~sYavv-~g~~I~vS~~---~~~--~GTysfDt~~~~W~~~GdW~LPF~G 223 (342)
T PF07893_consen 155 EESWSWRSLPPPP-FVRDRRYSDYRITSYAVV-DGRTIFVSVN---GRR--WGTYSFDTESHEWRKHGDWMLPFHG 223 (342)
T ss_pred CCcceEEcCCCCC-ccccCCcccceEEEEEEe-cCCeEEEEec---CCc--eEEEEEEcCCcceeeccceecCcCC
Confidence 1223788877766 32221 2 5566 8998888755 111 2689999999999986 678653
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=86.52 E-value=1.8 Score=28.79 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=30.5
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP 314 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~ 314 (476)
..+.++|.+|-+..... .......+..||+.+.+|..++
T Consensus 6 ~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEE
T ss_pred EEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcC
Confidence 67889999999986532 1244558999999999999873
No 43
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.87 E-value=30 Score=32.26 Aligned_cols=206 Identities=15% Similarity=0.114 Sum_probs=107.9
Q ss_pred ecccceEEEeecCCCccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeC
Q 011826 177 NSCNGFLCLRKPFHRNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLG 256 (476)
Q Consensus 177 ~s~~GLlcl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~ 256 (476)
...+|-|.+.+. ....++.++|.+++...+..+. ..++.++...+ +++.... ....+++..
T Consensus 8 d~~~g~l~~~D~-~~~~i~~~~~~~~~~~~~~~~~-----------~~G~~~~~~~g--~l~v~~~-----~~~~~~d~~ 68 (246)
T PF08450_consen 8 DPRDGRLYWVDI-PGGRIYRVDPDTGEVEVIDLPG-----------PNGMAFDRPDG--RLYVADS-----GGIAVVDPD 68 (246)
T ss_dssp ETTTTEEEEEET-TTTEEEEEETTTTEEEEEESSS-----------EEEEEEECTTS--EEEEEET-----TCEEEEETT
T ss_pred ECCCCEEEEEEc-CCCEEEEEECCCCeEEEEecCC-----------CceEEEEccCC--EEEEEEc-----CceEEEecC
Confidence 334666666654 2457999999999876654421 35566663222 3333222 245677999
Q ss_pred CCceEEccCCCCC--CccCc--cceEEcceEEEEEeeccCCCCCc--ceEEEEECCCceEEEEcCCCCCCCCCCccCCcc
Q 011826 257 GAAWRKVGNAPWS--PIAGL--FPTYLNGVIHWVCDDIEDDQSCS--DCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLY 330 (476)
Q Consensus 257 t~~Wr~~~~~p~~--~~~~~--~~v~~~G~lywl~~~~~~~~~~~--~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~ 330 (476)
++.++.+...+.. ..... -.+--+|.+|.-..... ..... ..|..+|.. .+...+.-. .... +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~-~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~p-----N-- 137 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGG-GASGIDPGSVYRIDPD-GKVTVVADG--LGFP-----N-- 137 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCB-CTTCGGSEEEEEEETT-SEEEEEEEE--ESSE-----E--
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCC-ccccccccceEEECCC-CeEEEEecC--cccc-----c--
Confidence 9998877654211 11111 33444688666544311 11111 479999999 554443211 1100 0
Q ss_pred eeeEEeeCC-eEEEEecCCCCCeEEEeeccCCCCcceEEEEEE-eCCCc-ceeeEEEEecCCcEEEEe-cCCEEEEEeCC
Q 011826 331 DMNLGVLGG-CLSICDVTYFAPPDIWVMKDYGVQESWIKQLSV-DNGYF-GICRPIKYLDDGSLLLFC-KRRALVLYNPV 406 (476)
Q Consensus 331 ~~~L~~~~G-~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I-~~~~~-~~~~p~~~~~~g~il~~~-~~~~l~~ydl~ 406 (476)
.+.+ .-+| .|++++. ..-.||..+-......+.....+ +.... +...=+.+-.+|.|++.. ..+++..||++
T Consensus 138 Gi~~-s~dg~~lyv~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 138 GIAF-SPDGKTLYVADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEE-ETTSSEEEEEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ceEE-CCcchheeeccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 1222 2234 4666654 33447777643222345544333 33211 122224556678888765 46899999999
Q ss_pred CCcEEEEEEe
Q 011826 407 EKNTRYLLIH 416 (476)
Q Consensus 407 t~~~~~v~i~ 416 (476)
.+.++.+.+.
T Consensus 214 G~~~~~i~~p 223 (246)
T PF08450_consen 214 GKLLREIELP 223 (246)
T ss_dssp SCEEEEEE-S
T ss_pred ccEEEEEcCC
Confidence 8777888766
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.58 E-value=0.35 Score=48.22 Aligned_cols=41 Identities=29% Similarity=0.497 Sum_probs=36.7
Q ss_pred cCCCCCCCCHHHHHHHHhcCCccccceeeccchhhhhhhCC
Q 011826 45 HYSTIIDLPSHILIDILSRLPLKSIFISRCVCKTWHILISD 85 (476)
Q Consensus 45 ~~~~~~~LP~Dll~eIL~RLP~ksL~R~r~VCK~W~~liss 85 (476)
+...--.||.+++..|++-|..++++|++.+|+.|+-+..+
T Consensus 68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 34445579999999999999999999999999999999877
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=84.45 E-value=2.8 Score=28.41 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=30.4
Q ss_pred cceEEcceEEEEEee-ccCCCCCcceEEEEECCCceEEEEcCC
Q 011826 275 FPTYLNGVIHWVCDD-IEDDQSCSDCIVGFDFEDERFCVIPAP 316 (476)
Q Consensus 275 ~~v~~~G~lywl~~~-~~~~~~~~~~Il~fD~~~e~f~~i~lP 316 (476)
..+.++|.+|.+... ..+.......+..||+++.+|..++.+
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 567889999988754 111223445799999999999988643
No 46
>smart00284 OLF Olfactomedin-like domains.
Probab=79.65 E-value=57 Score=30.94 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=73.6
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEE-cCCCCCCCC-CCc-cCCcceeeEEeeCCeEEEEecC--CC
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVI-PAPPHFAEK-PKT-RDNLYDMNLGVLGGCLSICDVT--YF 349 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i-~lP~~~~~~-~~~-~~~~~~~~L~~~~G~L~~~~~~--~~ 349 (476)
..|..||++|+.... +..|+.||+.+++.... .||...... ..+ +...-.+.|++-+..|-++... ..
T Consensus 78 G~VVYngslYY~~~~-------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 78 GVVVYNGSLYFNKFN-------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred cEEEECceEEEEecC-------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 679999999996643 34899999999999754 577543221 110 0011257788888888776542 23
Q ss_pred CCeEEEeeccCC--CCcceEEEEEEeCCCcceeeEEEEecCCcEEEEe-----cCCEEEEEeCCCCcEEEEEEe
Q 011826 350 APPDIWVMKDYG--VQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFC-----KRRALVLYNPVEKNTRYLLIH 416 (476)
Q Consensus 350 ~~l~IWvl~~~~--~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~-----~~~~l~~ydl~t~~~~~v~i~ 416 (476)
..|.|=.|+... ..++|.-.+ +....+- +|.--|.+.... .....+.||..|++-..+.|.
T Consensus 151 g~ivvSkLnp~tL~ve~tW~T~~--~k~sa~n----aFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 151 GKIVISKLNPATLTIENTWITTY--NKRSASN----AFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred CCEEEEeeCcccceEEEEEEcCC--Ccccccc----cEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 457777776532 245665421 1111110 111113333222 224568899998876666553
No 47
>smart00612 Kelch Kelch domain.
Probab=79.65 E-value=3.8 Score=26.84 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=17.3
Q ss_pred ccEEEEEEeCCCceEEccCCC
Q 011826 247 NRTAEIYSLGGAAWRKVGNAP 267 (476)
Q Consensus 247 ~~~~eVyss~t~~Wr~~~~~p 267 (476)
...+++|+..++.|+.++..+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC
Confidence 356899999999999887544
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=77.90 E-value=63 Score=30.45 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=90.7
Q ss_pred EEEEEEeCCCceEEccCCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCC--ceEEEEcCCCCCCCCCCcc
Q 011826 249 TAEIYSLGGAAWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFED--ERFCVIPAPPHFAEKPKTR 326 (476)
Q Consensus 249 ~~eVyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~--e~f~~i~lP~~~~~~~~~~ 326 (476)
...+|+..++++|.+.... ..+.....+.-||.+.-.... . .....|-.|+..+ ......+.|.....
T Consensus 47 ~s~~yD~~tn~~rpl~v~t-d~FCSgg~~L~dG~ll~tGG~-~---~G~~~ir~~~p~~~~~~~~w~e~~~~m~~----- 116 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQT-DTFCSGGAFLPDGRLLQTGGD-N---DGNKAIRIFTPCTSDGTCDWTESPNDMQS----- 116 (243)
T ss_pred EEEEEecCCCcEEeccCCC-CCcccCcCCCCCCCEEEeCCC-C---ccccceEEEecCCCCCCCCceECcccccC-----
Confidence 4667888888888776432 122222455667766643322 1 1223577788654 12222333333222
Q ss_pred CCcceeeEEee-CCeEEEEecCCCCCeEEEeeccCC-CCcceEEEEEE-eCCCcceeeEEEEecCCcEEEEecCCEEEEE
Q 011826 327 DNLYDMNLGVL-GGCLSICDVTYFAPPDIWVMKDYG-VQESWIKQLSV-DNGYFGICRPIKYLDDGSLLLFCKRRALVLY 403 (476)
Q Consensus 327 ~~~~~~~L~~~-~G~L~~~~~~~~~~l~IWvl~~~~-~~~~W~~~~~I-~~~~~~~~~p~~~~~~g~il~~~~~~~l~~y 403 (476)
.||......+ +|++.++........|+|=-+... ....|...... +.....++-.+.+..+|+||+..+.. -+.|
T Consensus 117 -~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~ 194 (243)
T PF07250_consen 117 -GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIY 194 (243)
T ss_pred -CCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEE
Confidence 2455554444 588887766444556666432221 01222211111 11123343445667899999887654 5667
Q ss_pred eCCCCcE-EEEEEeeCCCCeEEEEEecCCcccccC
Q 011826 404 NPVEKNT-RYLLIHEDQSMIFEAITHVPSFLSLKD 437 (476)
Q Consensus 404 dl~t~~~-~~v~i~g~~~~~~~~~~Y~~Slvs~~~ 437 (476)
|.+++++ +.+- ..+. ..+..|...+-|.++.
T Consensus 195 d~~~n~v~~~lP--~lPg-~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 195 DYKTNTVVRTLP--DLPG-GPRNYPASGSSVMLPL 226 (243)
T ss_pred eCCCCeEEeeCC--CCCC-CceecCCCcceEEecC
Confidence 9999965 4442 2222 2456667777665554
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=74.50 E-value=0.9 Score=48.03 Aligned_cols=47 Identities=28% Similarity=0.399 Sum_probs=41.5
Q ss_pred CCCCCCCCHHHHHHHHhcCCccccceeeccchhhhhhhCChHHHHHH
Q 011826 46 YSTIIDLPSHILIDILSRLPLKSIFISRCVCKTWHILISDPLFATLH 92 (476)
Q Consensus 46 ~~~~~~LP~Dll~eIL~RLP~ksL~R~r~VCK~W~~lissp~F~~~~ 92 (476)
...+..||.++...||..|+.++|++++.||+.|+.++.+.......
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~ 151 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRM 151 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhh
Confidence 45567899999999999999999999999999999999987766544
No 50
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.48 E-value=94 Score=30.79 Aligned_cols=118 Identities=13% Similarity=0.196 Sum_probs=70.6
Q ss_pred cceEEEEEeeccCCCCCcceEEEEECCCce--E---EEEcCCCCCCCCCCccCCcceeeEEeeCC-eEEEEecCCCCCeE
Q 011826 280 NGVIHWVCDDIEDDQSCSDCIVGFDFEDER--F---CVIPAPPHFAEKPKTRDNLYDMNLGVLGG-CLSICDVTYFAPPD 353 (476)
Q Consensus 280 ~G~lywl~~~~~~~~~~~~~Il~fD~~~e~--f---~~i~lP~~~~~~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~l~ 353 (476)
+|...|.+.. ..+.|..|++..+. + ..+.+|....-. .+.+.. +| .++++.. ....+.
T Consensus 154 dg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--------h~~f~p-dg~~~Yv~~e-~s~~v~ 217 (345)
T PF10282_consen 154 DGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--------HLAFSP-DGKYAYVVNE-LSNTVS 217 (345)
T ss_dssp TSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--------EEEE-T-TSSEEEEEET-TTTEEE
T ss_pred CCCEEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCCCCc--------EEEEcC-CcCEEEEecC-CCCcEE
Confidence 4666666643 24589999987766 5 335666654311 333333 44 4555554 667788
Q ss_pred EEeeccCCCCcceEEEEEEeCCC---c--ceeeEEEEecCCcEEEEec--CCEEEEEeC--CCCcEEEEEE
Q 011826 354 IWVMKDYGVQESWIKQLSVDNGY---F--GICRPIKYLDDGSLLLFCK--RRALVLYNP--VEKNTRYLLI 415 (476)
Q Consensus 354 IWvl~~~~~~~~W~~~~~I~~~~---~--~~~~p~~~~~~g~il~~~~--~~~l~~ydl--~t~~~~~v~i 415 (476)
++.+.... ..++...++...+ . ....-+.+..+|+.++..+ .+.+..|++ ++++++.+..
T Consensus 218 v~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 218 VFDYDPSD--GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEEETTT--TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred EEeecccC--CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 88887432 4788877777631 1 1234566778898777653 467888887 5678877764
No 51
>PRK05137 tolB translocation protein TolB; Provisional
Probab=72.16 E-value=1.2e+02 Score=31.07 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=92.2
Q ss_pred CccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCCCceEEccCCCCCC
Q 011826 191 RNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAAWRKVGNAPWSP 270 (476)
Q Consensus 191 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t~~Wr~~~~~p~~~ 270 (476)
...++++|+.|++...|...+. ...+..+.|.. +.-++....+ +...+.+++..++.-+.+...+...
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g---------~~~~~~~SPDG-~~la~~~~~~--g~~~Iy~~d~~~~~~~~Lt~~~~~~ 292 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPG---------MTFAPRFSPDG-RKVVMSLSQG--GNTDIYTMDLRSGTTTRLTDSPAID 292 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCC---------cccCcEECCCC-CEEEEEEecC--CCceEEEEECCCCceEEccCCCCcc
Confidence 3579999999998877754321 11233444432 2222222222 2356677788888777665433211
Q ss_pred ccCccceEEcce-EEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCC
Q 011826 271 IAGLFPTYLNGV-IHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYF 349 (476)
Q Consensus 271 ~~~~~~v~~~G~-lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~ 349 (476)
. .....-+|. +++...+ . ....|..+|+.++..+.+........ ......-+..|.+... ..
T Consensus 293 ~--~~~~spDG~~i~f~s~~---~--g~~~Iy~~d~~g~~~~~lt~~~~~~~---------~~~~SpdG~~ia~~~~-~~ 355 (435)
T PRK05137 293 T--SPSYSPDGSQIVFESDR---S--GSPQLYVMNADGSNPRRISFGGGRYS---------TPVWSPRGDLIAFTKQ-GG 355 (435)
T ss_pred C--ceeEcCCCCEEEEEECC---C--CCCeEEEEECCCCCeEEeecCCCccc---------CeEECCCCCEEEEEEc-CC
Confidence 0 022223454 4433322 1 12378889988877766643211110 1112222234555543 23
Q ss_pred CCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEE-EEec-C-----CEEEEEeCCCCcEEEEE
Q 011826 350 APPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLL-LFCK-R-----RALVLYNPVEKNTRYLL 414 (476)
Q Consensus 350 ~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il-~~~~-~-----~~l~~ydl~t~~~~~v~ 414 (476)
....||+++-.+ .. .+. +..+ ..... ..+..+|+.+ +... . ..|+.+|++++..+.+.
T Consensus 356 ~~~~i~~~d~~~--~~-~~~--lt~~-~~~~~-p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 356 GQFSIGVMKPDG--SG-ERI--LTSG-FLVEG-PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CceEEEEEECCC--Cc-eEe--ccCC-CCCCC-CeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 446777776433 11 221 2111 11112 2356677544 4332 1 36899999888776654
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=70.48 E-value=7.3 Score=26.13 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=21.6
Q ss_pred cceEE-cceEEEEEeeccCCCCCcceEEEEECCCceEEEE
Q 011826 275 FPTYL-NGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVI 313 (476)
Q Consensus 275 ~~v~~-~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i 313 (476)
.++.+ ++.+|-+.....++ .....+..||+.+++|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~-~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSG-SPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-T-EE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCC-cccCCEEEEECCCCEEEEC
Confidence 34555 47777776442211 2233689999999999998
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=70.38 E-value=95 Score=30.89 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=34.7
Q ss_pred EEEEEEeCCCceEEccCCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCc
Q 011826 249 TAEIYSLGGAAWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDE 308 (476)
Q Consensus 249 ~~eVyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e 308 (476)
.+.-|+-++..|+.++.=. +|+.. .+.|+..-=-|+.....++. ..|-+.|+.+.
T Consensus 200 GTysfDt~~~~W~~~GdW~-LPF~G-~a~y~~el~~W~Gls~~~~~---~~lca~dv~~~ 254 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWM-LPFHG-QAEYVPELDLWFGLSSDGGG---GHLCACDVSSA 254 (342)
T ss_pred EEEEEEcCCcceeecccee-cCcCC-ccEECCCcCeEEEeccCCCC---cEEEEEecccc
Confidence 4777788888999997421 23222 56666655577765522211 38899998774
No 54
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=70.06 E-value=6.1 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=17.2
Q ss_pred ccEEEEEEeCCCceEEccCC
Q 011826 247 NRTAEIYSLGGAAWRKVGNA 266 (476)
Q Consensus 247 ~~~~eVyss~t~~Wr~~~~~ 266 (476)
...+++|+..++.|+.++..
T Consensus 27 ~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEEEEETTTTEEEEEEEE
T ss_pred eeeEEEEeCCCCEEEEcCCC
Confidence 56899999999999988753
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=66.29 E-value=1.5e+02 Score=29.85 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=73.2
Q ss_pred EEEEEEeCCC--ceEEccCCCCCCccC-ccceEEcceEEEEEeeccCCCCCcceEEEEECCCce--EEE-EcCCCCCCCC
Q 011826 249 TAEIYSLGGA--AWRKVGNAPWSPIAG-LFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDER--FCV-IPAPPHFAEK 322 (476)
Q Consensus 249 ~~eVyss~t~--~Wr~~~~~p~~~~~~-~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~--f~~-i~lP~~~~~~ 322 (476)
.+.-++..+| .|+.-...+...... ..++..+|.+|+-..+ ..+.++|..+.+ |+. +..|......
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~--------g~v~a~d~~~G~~~W~~~~~~~~~~~~~ 242 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN--------GRVSAVLMEQGQLIWQQRISQPTGATEI 242 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC--------CEEEEEEccCChhhheeccccCCCccch
Confidence 5677787777 488755433222211 2667778888775432 279999987754 542 2223221100
Q ss_pred CCccCCcceeeEEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecCCEEEE
Q 011826 323 PKTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKRRALVL 402 (476)
Q Consensus 323 ~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~~~l~~ 402 (476)
... .+ ....-...+|.|++... .. .+..++-...+..|.... +. ...| ...++.|++...++.++.
T Consensus 243 ~~~-~~-~~~sP~v~~~~vy~~~~--~g--~l~ald~~tG~~~W~~~~----~~--~~~~--~~~~~~vy~~~~~g~l~a 308 (394)
T PRK11138 243 DRL-VD-VDTTPVVVGGVVYALAY--NG--NLVALDLRSGQIVWKREY----GS--VNDF--AVDGGRIYLVDQNDRVYA 308 (394)
T ss_pred hcc-cc-cCCCcEEECCEEEEEEc--CC--eEEEEECCCCCEEEeecC----CC--ccCc--EEECCEEEEEcCCCeEEE
Confidence 000 00 01122344677766553 22 334443222245676532 10 0112 234567777777889999
Q ss_pred EeCCCCcE
Q 011826 403 YNPVEKNT 410 (476)
Q Consensus 403 ydl~t~~~ 410 (476)
+|.++++.
T Consensus 309 ld~~tG~~ 316 (394)
T PRK11138 309 LDTRGGVE 316 (394)
T ss_pred EECCCCcE
Confidence 99988764
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.92 E-value=1.7e+02 Score=30.17 Aligned_cols=189 Identities=13% Similarity=0.135 Sum_probs=100.4
Q ss_pred eEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCCCceEE-ccCCCCCCccCc-cceEEcceEEEEEeeccCCCCCcce
Q 011826 222 VISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAAWRK-VGNAPWSPIAGL-FPTYLNGVIHWVCDDIEDDQSCSDC 299 (476)
Q Consensus 222 ~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t~~Wr~-~~~~p~~~~~~~-~~v~~~G~lywl~~~~~~~~~~~~~ 299 (476)
....+.|.|. ..|.+++.. ..++.+|++.+.+=+. +.. +.-..+ ..+..+|.|...... ++.
T Consensus 28 ~vssl~fsp~-~P~d~aVt~-----S~rvqly~~~~~~~~k~~sr---Fk~~v~s~~fR~DG~LlaaGD~-------sG~ 91 (487)
T KOG0310|consen 28 SVSSLCFSPK-HPYDFAVTS-----SVRVQLYSSVTRSVRKTFSR---FKDVVYSVDFRSDGRLLAAGDE-------SGH 91 (487)
T ss_pred cceeEecCCC-CCCceEEec-----ccEEEEEecchhhhhhhHHh---hccceeEEEeecCCeEEEccCC-------cCc
Confidence 4556666664 334444332 3679999998764221 111 100011 234455988776533 448
Q ss_pred EEEEECCCceE-EEE---cCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEeCC
Q 011826 300 IVGFDFEDERF-CVI---PAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVDNG 375 (476)
Q Consensus 300 Il~fD~~~e~f-~~i---~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~~~ 375 (476)
|-.||+.+... +.+ ..|.. .......++.+.+... .+....+|.+.... + .+++.
T Consensus 92 V~vfD~k~r~iLR~~~ah~apv~------------~~~f~~~d~t~l~s~s-Dd~v~k~~d~s~a~-----v---~~~l~ 150 (487)
T KOG0310|consen 92 VKVFDMKSRVILRQLYAHQAPVH------------VTKFSPQDNTMLVSGS-DDKVVKYWDLSTAY-----V---QAELS 150 (487)
T ss_pred EEEeccccHHHHHHHhhccCcee------------EEEecccCCeEEEecC-CCceEEEEEcCCcE-----E---EEEec
Confidence 99999666322 112 22322 2223334454444443 56779999997532 2 22332
Q ss_pred Ccceee-EEEEec-CCcEEEEec-CCEEEEEeCCCCcEEEEEEeeCCCCeEEEEEecCCcccccCCCCCceEEeeee
Q 011826 376 YFGICR-PIKYLD-DGSLLLFCK-RRALVLYNPVEKNTRYLLIHEDQSMIFEAITHVPSFLSLKDVGGDNLTVQNIN 449 (476)
Q Consensus 376 ~~~~~~-p~~~~~-~g~il~~~~-~~~l~~ydl~t~~~~~v~i~g~~~~~~~~~~Y~~Slvs~~~~~~~~~~~~~~~ 449 (476)
...-+. -..+.. ++.|++... ++.+-.||.++.+-+.+++..... ...+.|.||=-.+-..+|.++++-...
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~p--Ve~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCP--VESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCc--eeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 122222 222333 335666554 467889999988755555543333 366777777444555677777774433
No 57
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=65.59 E-value=1.2e+02 Score=28.24 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=62.2
Q ss_pred cceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCeEEEeecc
Q 011826 280 NGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKD 359 (476)
Q Consensus 280 ~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~ 359 (476)
+|.|||.... ...|..+|..+.+...+.+|... .+.+..-+|.|+++.. ..+.+. +
T Consensus 11 ~g~l~~~D~~-------~~~i~~~~~~~~~~~~~~~~~~~-----------G~~~~~~~g~l~v~~~---~~~~~~---d 66 (246)
T PF08450_consen 11 DGRLYWVDIP-------GGRIYRVDPDTGEVEVIDLPGPN-----------GMAFDRPDGRLYVADS---GGIAVV---D 66 (246)
T ss_dssp TTEEEEEETT-------TTEEEEEETTTTEEEEEESSSEE-----------EEEEECTTSEEEEEET---TCEEEE---E
T ss_pred CCEEEEEEcC-------CCEEEEEECCCCeEEEEecCCCc-----------eEEEEccCCEEEEEEc---CceEEE---e
Confidence 6999998743 33899999999999998888611 2222223577777764 222222 2
Q ss_pred CCCCcceEEEEEEeCCC--cceeeEEEEecCCcEEEEecC---------CEEEEEeCCCCcEEEE
Q 011826 360 YGVQESWIKQLSVDNGY--FGICRPIKYLDDGSLLLFCKR---------RALVLYNPVEKNTRYL 413 (476)
Q Consensus 360 ~~~~~~W~~~~~I~~~~--~~~~~p~~~~~~g~il~~~~~---------~~l~~ydl~t~~~~~v 413 (476)
.. ...++.......+. .....-+.+..+|.+++.... +.++.++.+ ++++.+
T Consensus 67 ~~-~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 67 PD-TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp TT-TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred cC-CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 22 24676666653222 122233556667777765421 457888887 555443
No 58
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=64.98 E-value=1.6e+02 Score=29.76 Aligned_cols=163 Identities=9% Similarity=0.043 Sum_probs=82.7
Q ss_pred CCCeEEEEEEEcCccccEEEEEEeCCC-----ceEEccCCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEEECC
Q 011826 232 SKQYKVLRLVFDDFLNRTAEIYSLGGA-----AWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFE 306 (476)
Q Consensus 232 ~~~yKVv~~~~~~~~~~~~eVyss~t~-----~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~ 306 (476)
.+.|-++....... ...+.+.+...+ .|+.+....... ....-..++.+|.++.. ......|++.|+.
T Consensus 237 d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~~--~~~v~~~~~~~yi~Tn~----~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 237 DGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDGV--EYYVDHHGDRLYILTND----DAPNGRLVAVDLA 309 (414)
T ss_dssp TSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS---EEEEEEETTEEEEEE-T----T-TT-EEEEEETT
T ss_pred cccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCce--EEEEEccCCEEEEeeCC----CCCCcEEEEeccc
Confidence 34555544433321 245666666654 677775422111 11233447778877753 1233489999998
Q ss_pred Cce---EEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEE
Q 011826 307 DER---FCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPI 383 (476)
Q Consensus 307 ~e~---f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~ 383 (476)
+-. |..+-.|+.... ....+...++.|.+... .+..-.|.+++-. ..|... .+.+...+....+
T Consensus 310 ~~~~~~~~~~l~~~~~~~--------~l~~~~~~~~~Lvl~~~-~~~~~~l~v~~~~---~~~~~~-~~~~p~~g~v~~~ 376 (414)
T PF02897_consen 310 DPSPAEWWTVLIPEDEDV--------SLEDVSLFKDYLVLSYR-ENGSSRLRVYDLD---DGKESR-EIPLPEAGSVSGV 376 (414)
T ss_dssp STSGGGEEEEEE--SSSE--------EEEEEEEETTEEEEEEE-ETTEEEEEEEETT----TEEEE-EEESSSSSEEEEE
T ss_pred ccccccceeEEcCCCCce--------eEEEEEEECCEEEEEEE-ECCccEEEEEECC---CCcEEe-eecCCcceEEecc
Confidence 765 554333332211 13345556788887765 2334344444322 134443 3444322221112
Q ss_pred E-EecCCcEEEEe----cCCEEEEEeCCCCcEEEEE
Q 011826 384 K-YLDDGSLLLFC----KRRALVLYNPVEKNTRYLL 414 (476)
Q Consensus 384 ~-~~~~g~il~~~----~~~~l~~ydl~t~~~~~v~ 414 (476)
. -..+++++|.. .+..++.||+++++.+.+.
T Consensus 377 ~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 377 SGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 1 12334666654 3568999999999988775
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.67 E-value=1.6e+02 Score=29.29 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=70.2
Q ss_pred EEEEEEeCCC--ceEEccCCCCCCccC-ccceEEcceEEEEEeeccCCCCCcceEEEEECCCc--eEEE-EcCCCCCCCC
Q 011826 249 TAEIYSLGGA--AWRKVGNAPWSPIAG-LFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDE--RFCV-IPAPPHFAEK 322 (476)
Q Consensus 249 ~~eVyss~t~--~Wr~~~~~p~~~~~~-~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e--~f~~-i~lP~~~~~~ 322 (476)
.+..++..+| .|+.-...+...... ..++..+|.+|.-.. ...+.++|..++ .|+. +..|......
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~--------~g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA--------GGKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC--------CCEEEEEEccCCCEeeeeccccCCCCCch
Confidence 4667777776 587655433222111 256777887765332 238999998765 4532 2223211100
Q ss_pred CCccCCcceeeEEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecCCEEEE
Q 011826 323 PKTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKRRALVL 402 (476)
Q Consensus 323 ~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~~~l~~ 402 (476)
.... .........+|.+++... ...+..+-++. + +..|.... . ....|. ..++.|++...++.++.
T Consensus 228 ~~~~--~~~~~p~~~~~~vy~~~~--~g~l~a~d~~t-G-~~~W~~~~----~--~~~~p~--~~~~~vyv~~~~G~l~~ 293 (377)
T TIGR03300 228 ERLV--DVDGDPVVDGGQVYAVSY--QGRVAALDLRS-G-RVLWKRDA----S--SYQGPA--VDDNRLYVTDADGVVVA 293 (377)
T ss_pred hhhh--ccCCccEEECCEEEEEEc--CCEEEEEECCC-C-cEEEeecc----C--CccCce--EeCCEEEEECCCCeEEE
Confidence 0000 001112234566666543 33444444432 2 35676541 1 111222 34567777777788999
Q ss_pred EeCCCCcE
Q 011826 403 YNPVEKNT 410 (476)
Q Consensus 403 ydl~t~~~ 410 (476)
+|.++++.
T Consensus 294 ~d~~tG~~ 301 (377)
T TIGR03300 294 LDRRSGSE 301 (377)
T ss_pred EECCCCcE
Confidence 99988764
No 60
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=63.00 E-value=1.6e+02 Score=29.05 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=80.6
Q ss_pred cceEEEEECCCceEEEE---cCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEe
Q 011826 297 SDCIVGFDFEDERFCVI---PAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVD 373 (476)
Q Consensus 297 ~~~Il~fD~~~e~f~~i---~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~ 373 (476)
.+.|..||+.+...... .+++.... | .+ .-.-+|+++++..+-.+.+.+|..+... ..-..+.+|+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GP-------R-Hi-~FHpn~k~aY~v~EL~stV~v~~y~~~~--g~~~~lQ~i~ 234 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGP-------R-HI-VFHPNGKYAYLVNELNSTVDVLEYNPAV--GKFEELQTID 234 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCc-------c-eE-EEcCCCcEEEEEeccCCEEEEEEEcCCC--ceEEEeeeec
Confidence 34677777776555432 23333221 1 22 2233577766555567889999998753 4566666666
Q ss_pred CCC-----cceeeEEEEecCCcEEEEecC----CEEEEEeCCCCcEEEEEEeeCCCCeEE--EEEecCCcccccCCCCCc
Q 011826 374 NGY-----FGICRPIKYLDDGSLLLFCKR----RALVLYNPVEKNTRYLLIHEDQSMIFE--AITHVPSFLSLKDVGGDN 442 (476)
Q Consensus 374 ~~~-----~~~~~p~~~~~~g~il~~~~~----~~l~~ydl~t~~~~~v~i~g~~~~~~~--~~~Y~~Slvs~~~~~~~~ 442 (476)
.-+ ......+.+..+|++|..++- -.++..|..+++++.+........+++ .+.....++-.-.-..++
T Consensus 235 tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 235 TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 521 122456778889999888653 256777888888887775433332333 333445554333335566
Q ss_pred eEEee
Q 011826 443 LTVQN 447 (476)
Q Consensus 443 ~~~~~ 447 (476)
+.+..
T Consensus 315 i~vf~ 319 (346)
T COG2706 315 ITVFE 319 (346)
T ss_pred EEEEE
Confidence 66543
No 61
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=62.55 E-value=18 Score=24.25 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=15.5
Q ss_pred CcceEEEEECCCceEEEE
Q 011826 296 CSDCIVGFDFEDERFCVI 313 (476)
Q Consensus 296 ~~~~Il~fD~~~e~f~~i 313 (476)
....+..||+.+.+|+.+
T Consensus 17 ~~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRI 34 (49)
T ss_pred EecCEEEEECCCCEEEEC
Confidence 334799999999999998
No 62
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=61.27 E-value=10 Score=25.41 Aligned_cols=21 Identities=14% Similarity=0.435 Sum_probs=13.7
Q ss_pred ccEEEEEEeCCCceEEccCCC
Q 011826 247 NRTAEIYSLGGAAWRKVGNAP 267 (476)
Q Consensus 247 ~~~~eVyss~t~~Wr~~~~~p 267 (476)
...+++|+..+++|+.++..|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 457899999999999996544
No 63
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=59.72 E-value=84 Score=32.66 Aligned_cols=65 Identities=15% Similarity=0.353 Sum_probs=38.1
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEE-cCccccEEEEEEeCCCce--EEcc
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVF-DDFLNRTAEIYSLGGAAW--RKVG 264 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~-~~~~~~~~eVyss~t~~W--r~~~ 264 (476)
.++.|+|-+|+||. +|.... +. .....++||-. +.-||+++.+ .+++.+.-+.|.+....| +++.
T Consensus 57 DELHvYNTatnqWf-~PavrG-Di----PpgcAA~Gfvc--dGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlk 124 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRG-DI----PPGCAAFGFVC--DGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLK 124 (830)
T ss_pred hhhhhhccccceee-cchhcC-CC----CCchhhcceEe--cCceEEEEccEeeeccccchHHHhhhhhhhHhhcC
Confidence 47999999999986 454332 11 11233444432 2346666633 344566777888887655 5554
No 64
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=58.35 E-value=17 Score=24.37 Aligned_cols=20 Identities=5% Similarity=0.298 Sum_probs=17.3
Q ss_pred ccEEEEEEeCCCceEEccCC
Q 011826 247 NRTAEIYSLGGAAWRKVGNA 266 (476)
Q Consensus 247 ~~~~eVyss~t~~Wr~~~~~ 266 (476)
...+++|+.++.+|+.+...
T Consensus 29 ~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 29 SNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred cceeEEEECCCCEEeecCCC
Confidence 56799999999999998754
No 65
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=56.70 E-value=7.7 Score=37.95 Aligned_cols=39 Identities=26% Similarity=0.507 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHHHHhcCC--------ccccceeeccchhhhhhhCC
Q 011826 47 STIIDLPSHILIDILSRLP--------LKSIFISRCVCKTWHILISD 85 (476)
Q Consensus 47 ~~~~~LP~Dll~eIL~RLP--------~ksL~R~r~VCK~W~~liss 85 (476)
..|+.||.+++.+|+.|.. -++++-+..||+.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 6899999999999999986 23688999999999998765
No 66
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=55.30 E-value=2.1e+02 Score=27.85 Aligned_cols=144 Identities=9% Similarity=0.095 Sum_probs=68.8
Q ss_pred cEEEEEEeC-CCceEEccCCCCCCccCccceEE--cceEEEEEeeccCCCCCcceEEEEECCCce-E-EEEc-CCCCCCC
Q 011826 248 RTAEIYSLG-GAAWRKVGNAPWSPIAGLFPTYL--NGVIHWVCDDIEDDQSCSDCIVGFDFEDER-F-CVIP-APPHFAE 321 (476)
Q Consensus 248 ~~~eVyss~-t~~Wr~~~~~p~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~~Il~fD~~~e~-f-~~i~-lP~~~~~ 321 (476)
..+.+|+.. ++++..+...+... ....+.+ +|...+.+.. ....|..||+.+.. . ..+. ++.. ..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~--~p~~i~~~~~g~~l~v~~~------~~~~v~v~~~~~~g~~~~~~~~~~~~-~~ 127 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPG--SPTHISTDHQGRFLFSASY------NANCVSVSPLDKDGIPVAPIQIIEGL-EG 127 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCC--CceEEEECCCCCEEEEEEc------CCCeEEEEEECCCCCCCCceeeccCC-Cc
Confidence 456667765 56776554322111 1123333 4665555532 13478889886421 1 1121 1110 00
Q ss_pred CCCccCCcceeeEEeeCC-eEEEEecCCCCCeEEEeeccCCCCcceEE----EEEEeCCCcceeeEEEEecCCcEEEEec
Q 011826 322 KPKTRDNLYDMNLGVLGG-CLSICDVTYFAPPDIWVMKDYGVQESWIK----QLSVDNGYFGICRPIKYLDDGSLLLFCK 396 (476)
Q Consensus 322 ~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~l~IWvl~~~~~~~~W~~----~~~I~~~~~~~~~p~~~~~~g~il~~~~ 396 (476)
. ....+ .-+| .|+++.. ....+.+|-++..+ .-.. ...+..+ .. ..-+.+..+|+.++..+
T Consensus 128 ~-------~~~~~-~p~g~~l~v~~~-~~~~v~v~d~~~~g---~l~~~~~~~~~~~~g-~~-p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 128 C-------HSANI-DPDNRTLWVPCL-KEDRIRLFTLSDDG---HLVAQEPAEVTTVEG-AG-PRHMVFHPNQQYAYCVN 193 (330)
T ss_pred c-------cEeEe-CCCCCEEEEeeC-CCCEEEEEEECCCC---cccccCCCceecCCC-CC-CceEEECCCCCEEEEEe
Confidence 0 02112 2244 4445544 56779999887533 1111 0112221 11 12356678887665543
Q ss_pred --CCEEEEEeCC--CCcEEEEE
Q 011826 397 --RRALVLYNPV--EKNTRYLL 414 (476)
Q Consensus 397 --~~~l~~ydl~--t~~~~~v~ 414 (476)
.+.+..||++ +++++.+.
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEE
Confidence 5788888887 45665543
No 67
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=55.11 E-value=1.7e+02 Score=26.65 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=73.2
Q ss_pred EEEEEEeCCC--ceEEccCCCCCCccCc--cceEEcceEEEEEeeccCCCCCcceEEEEECCCceEE-EEcCCCCCCCCC
Q 011826 249 TAEIYSLGGA--AWRKVGNAPWSPIAGL--FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFC-VIPAPPHFAEKP 323 (476)
Q Consensus 249 ~~eVyss~t~--~Wr~~~~~p~~~~~~~--~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~-~i~lP~~~~~~~ 323 (476)
.+..++..+| -|+.--.+. .... ..+..+|.+|-... ...|.++|..+.+-. ...++....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~~~~~~--- 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPG---IGGPVATAVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDLPGPIS--- 69 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSS---CSSEEETEEEETTEEEEEET--------TSEEEEEETTTSEEEEEEECSSCGG---
T ss_pred EEEEEECCCCCEEEEEECCCC---CCCccceEEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeecccccc---
Confidence 4567787777 588733211 1111 24447777777632 238999998665432 234443322
Q ss_pred CccCCcceeeEEeeCCeEEEEecCCCCCeEEEeec-cCCCCcceEEEEEEeCCCcceeeEE-EEecCCcEEEEecCCEEE
Q 011826 324 KTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMK-DYGVQESWIKQLSVDNGYFGICRPI-KYLDDGSLLLFCKRRALV 401 (476)
Q Consensus 324 ~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~-~~~~~~~W~~~~~I~~~~~~~~~p~-~~~~~g~il~~~~~~~l~ 401 (476)
......++.+++... +. .|+.++ ..| +..|....... +......+. ....++.+++....+.++
T Consensus 70 --------~~~~~~~~~v~v~~~--~~--~l~~~d~~tG-~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 70 --------GAPVVDGGRVYVGTS--DG--SLYALDAKTG-KVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTSSGKLV 135 (238)
T ss_dssp --------SGEEEETTEEEEEET--TS--EEEEEETTTS-CEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred --------ceeeecccccccccc--ee--eeEecccCCc-ceeeeeccccc-cccccccccCceEecCEEEEEeccCcEE
Confidence 113556677776663 22 677776 334 57788422211 111111121 122244566666689999
Q ss_pred EEeCCCCcEE
Q 011826 402 LYNPVEKNTR 411 (476)
Q Consensus 402 ~ydl~t~~~~ 411 (476)
.+|+++++..
T Consensus 136 ~~d~~tG~~~ 145 (238)
T PF13360_consen 136 ALDPKTGKLL 145 (238)
T ss_dssp EEETTTTEEE
T ss_pred EEecCCCcEE
Confidence 9999988763
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=54.99 E-value=2.4e+02 Score=28.42 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=55.3
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCCc--eEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCe
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDE--RFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPP 352 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e--~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l 352 (476)
.++..+|.+|....+ ..+.++|..+. .|+. +++. ...+...+|.|++... +..
T Consensus 251 sP~v~~~~vy~~~~~--------g~l~ald~~tG~~~W~~-~~~~-------------~~~~~~~~~~vy~~~~--~g~- 305 (394)
T PRK11138 251 TPVVVGGVVYALAYN--------GNLVALDLRSGQIVWKR-EYGS-------------VNDFAVDGGRIYLVDQ--NDR- 305 (394)
T ss_pred CcEEECCEEEEEEcC--------CeEEEEECCCCCEEEee-cCCC-------------ccCcEEECCEEEEEcC--CCe-
Confidence 677889999986643 28999998765 4543 2211 0112334455555432 111
Q ss_pred EEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecCCEEEEEeCCCCcEE
Q 011826 353 DIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKRRALVLYNPVEKNTR 411 (476)
Q Consensus 353 ~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~~~l~~ydl~t~~~~ 411 (476)
+..++-...+..|.... .. ......|+ ..+|.|++...++.++.+|.+++++.
T Consensus 306 -l~ald~~tG~~~W~~~~-~~--~~~~~sp~--v~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 306 -VYALDTRGGVELWSQSD-LL--HRLLTAPV--LYNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred -EEEEECCCCcEEEcccc-cC--CCcccCCE--EECCEEEEEeCCCEEEEEECCCCCEE
Confidence 22222111123443210 00 01112333 24567777777888999999988753
No 69
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=54.48 E-value=48 Score=27.05 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=30.6
Q ss_pred cEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcC
Q 011826 193 PCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDD 244 (476)
Q Consensus 193 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~ 244 (476)
.+.+.||.|+.| ||.... ......+.+.+++..+.|+|+.....+
T Consensus 10 ~Vm~~d~~tk~W--~P~~~~-----~~~ls~V~~~~~~~~~~yrIvg~~~~~ 54 (111)
T cd01207 10 SVMVYDDSNKKW--VPAGGG-----SQGFSRVQIYHHPRNNTFRVVGRKLQD 54 (111)
T ss_pred EeeEEcCCCCcE--EcCCCC-----CCCcceEEEEEcCCCCEEEEEEeecCC
Confidence 478999999986 454321 012245677788889999999875443
No 70
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=51.95 E-value=3.9e+02 Score=29.99 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=39.7
Q ss_pred eEEEEecCCCCCeEEEeeccCCCCcceEEEEEE-eCCCcceeeEEEEecC-CcEEEEecCCEEEEEeCCCCcE
Q 011826 340 CLSICDVTYFAPPDIWVMKDYGVQESWIKQLSV-DNGYFGICRPIKYLDD-GSLLLFCKRRALVLYNPVEKNT 410 (476)
Q Consensus 340 ~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I-~~~~~~~~~p~~~~~~-g~il~~~~~~~l~~ydl~t~~~ 410 (476)
.|.++. .+..+.||-+++......|..+..- +......+.......+ |.+++...++.|..|+.++...
T Consensus 152 fLAvss--~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 152 FLAVSS--CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred EEEEEe--cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 344443 3678999999876544556654221 1111122333334444 5787777778888888777653
No 71
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=50.46 E-value=1.8e+02 Score=26.63 Aligned_cols=120 Identities=11% Similarity=0.123 Sum_probs=63.7
Q ss_pred EEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEe--eCC--eE-EEEec---CCC
Q 011826 278 YLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGV--LGG--CL-SICDV---TYF 349 (476)
Q Consensus 278 ~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~--~~G--~L-~~~~~---~~~ 349 (476)
.+||-+ ++... ..++..|+.++++..+|.|+....... .....++- ..+ ++ .+... ...
T Consensus 3 sCnGLl-c~~~~--------~~~~V~NP~T~~~~~LP~~~~~~~~~~----~~~~~~G~d~~~~~YKVv~~~~~~~~~~~ 69 (230)
T TIGR01640 3 PCDGLI-CFSYG--------KRLVVWNPSTGQSRWLPTPKSRRSNKE----SDTYFLGYDPIEKQYKVLCFSDRSGNRNQ 69 (230)
T ss_pred ccceEE-EEecC--------CcEEEECCCCCCEEecCCCCCcccccc----cceEEEeecccCCcEEEEEEEeecCCCCC
Confidence 478888 44421 279999999999999987654211100 00011111 111 12 22221 112
Q ss_pred CCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecC-----C-EEEEEeCCCCcEEE-EEEe
Q 011826 350 APPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKR-----R-ALVLYNPVEKNTRY-LLIH 416 (476)
Q Consensus 350 ~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~-----~-~l~~ydl~t~~~~~-v~i~ 416 (476)
..++|..+.. .+|...... ......... ++.-+|.+...... . .++.||+++++++. +..+
T Consensus 70 ~~~~Vys~~~----~~Wr~~~~~-~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 70 SEHQVYTLGS----NSWRTIECS-PPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred ccEEEEEeCC----CCccccccC-CCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 3567777753 479876421 111111122 45556766554321 1 79999999999995 5544
No 72
>PLN02772 guanylate kinase
Probab=49.83 E-value=95 Score=31.51 Aligned_cols=74 Identities=8% Similarity=0.015 Sum_probs=49.3
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEEEc----CCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCC
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIP----APPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFA 350 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~----lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~ 350 (476)
.+|.+++.+|.+..+.. .......+..||..+.+|..-. .|....+ ......-+++|.+.......
T Consensus 29 tav~igdk~yv~GG~~d-~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G---------hSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHE-GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG---------YSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred eeEEECCEEEEEcccCC-CccccceEEEEECCCCcEecccccCCCCCCCCc---------ceEEEECCceEEEEeCCCCC
Confidence 67889999998886421 2224458999999999998642 3333322 22233446788887654455
Q ss_pred CeEEEeec
Q 011826 351 PPDIWVMK 358 (476)
Q Consensus 351 ~l~IWvl~ 358 (476)
.=+||.|+
T Consensus 99 ~~~~w~l~ 106 (398)
T PLN02772 99 DDSIWFLE 106 (398)
T ss_pred ccceEEEE
Confidence 68899996
No 73
>PRK00178 tolB translocation protein TolB; Provisional
Probab=48.59 E-value=3.1e+02 Score=27.89 Aligned_cols=187 Identities=14% Similarity=0.040 Sum_probs=93.1
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCCCceEEccCCCCCCc
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAAWRKVGNAPWSPI 271 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t~~Wr~~~~~p~~~~ 271 (476)
..++++|..|++...|..... ......+.|. +++-++....+ +...+.+++..++..+.+........
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g---------~~~~~~~SpD-G~~la~~~~~~--g~~~Iy~~d~~~~~~~~lt~~~~~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG---------LNGAPAWSPD-GSKLAFVLSKD--GNPEIYVMDLASRQLSRVTNHPAIDT 290 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC---------CcCCeEECCC-CCEEEEEEccC--CCceEEEEECCCCCeEEcccCCCCcC
Confidence 469999999998877764321 1112344443 22222222222 23567888999998887764331111
Q ss_pred cCccceEEcce-EEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCC
Q 011826 272 AGLFPTYLNGV-IHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFA 350 (476)
Q Consensus 272 ~~~~~v~~~G~-lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~ 350 (476)
.....-+|. +++.... + ....|..+|+.+.+...+........ ......-+..|++... ...
T Consensus 291 --~~~~spDg~~i~f~s~~---~--g~~~iy~~d~~~g~~~~lt~~~~~~~---------~~~~Spdg~~i~~~~~-~~~ 353 (430)
T PRK00178 291 --EPFWGKDGRTLYFTSDR---G--GKPQIYKVNVNGGRAERVTFVGNYNA---------RPRLSADGKTLVMVHR-QDG 353 (430)
T ss_pred --CeEECCCCCEEEEEECC---C--CCceEEEEECCCCCEEEeecCCCCcc---------ceEECCCCCEEEEEEc-cCC
Confidence 011122454 5555432 1 12378889998887776643221110 1222222345555544 334
Q ss_pred CeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEE-ec---CCEEEEEeCCCCcEEEEE
Q 011826 351 PPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLF-CK---RRALVLYNPVEKNTRYLL 414 (476)
Q Consensus 351 ~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~-~~---~~~l~~ydl~t~~~~~v~ 414 (476)
..+||+++-.+ .....+ ..... ...| .+..+|+.++. .. ...++..+.+++..+.+.
T Consensus 354 ~~~l~~~dl~t--g~~~~l---t~~~~-~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 354 NFHVAAQDLQR--GSVRIL---TDTSL-DESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred ceEEEEEECCC--CCEEEc---cCCCC-CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 56788776433 223222 21111 1133 45667754443 32 235777787766554443
No 74
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=46.96 E-value=3.4e+02 Score=27.93 Aligned_cols=97 Identities=13% Similarity=0.230 Sum_probs=56.4
Q ss_pred ceEEEEECCCceEEEEcCCCCCCCCCCccCCcceee-EEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEeCCC
Q 011826 298 DCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMN-LGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVDNGY 376 (476)
Q Consensus 298 ~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~-L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~~~~ 376 (476)
.++.+||+.+.+...+..|...... .+... +...+..|.+.. ....|.|=..+. ..|.--+.|+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~------~~e~FeVShd~~fia~~G--~~G~I~lLhakT----~eli~s~Kie--- 344 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEK------SMERFEVSHDSNFIAIAG--NNGHIHLLHAKT----KELITSFKIE--- 344 (514)
T ss_pred eEEEEeeccccccccccCCCCcccc------hhheeEecCCCCeEEEcc--cCceEEeehhhh----hhhhheeeec---
Confidence 3899999999999999988876632 11111 112222222221 234455544442 2354444443
Q ss_pred cceeeEEEEecCCc-EEEEecCCEEEEEeCCCCcE
Q 011826 377 FGICRPIKYLDDGS-LLLFCKRRALVLYNPVEKNT 410 (476)
Q Consensus 377 ~~~~~p~~~~~~g~-il~~~~~~~l~~ydl~t~~~ 410 (476)
+...-+.+..+|+ |+..+..+.++.+|++++..
T Consensus 345 -G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 345 -GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred -cEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 2334556667775 55555678999999998864
No 75
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=46.27 E-value=45 Score=19.82 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=18.7
Q ss_pred cCCcEEEEecCCEEEEEeCCCCcEE
Q 011826 387 DDGSLLLFCKRRALVLYNPVEKNTR 411 (476)
Q Consensus 387 ~~g~il~~~~~~~l~~ydl~t~~~~ 411 (476)
.+|.+++...++.++.+|.++++..
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEE
Confidence 4456666677789999999887653
No 76
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=44.99 E-value=2.2e+02 Score=28.32 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=63.5
Q ss_pred cceEEc--ceEEEEEeeccCCCCCcceEEEEECCCceEEEE---cCCCCCCCCCCccCCccee-eEEeeCCeEEEEecC-
Q 011826 275 FPTYLN--GVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVI---PAPPHFAEKPKTRDNLYDM-NLGVLGGCLSICDVT- 347 (476)
Q Consensus 275 ~~v~~~--G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i---~lP~~~~~~~~~~~~~~~~-~L~~~~G~L~~~~~~- 347 (476)
.+++.+ |.+||++.+ ..|...|++.+.-... ++-........|.-.+|.. .+-.-.|+|++....
T Consensus 188 ~~~~~~~~~~~~F~Sy~--------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYE--------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp --EEETTTTEEEEEBTT--------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred ccceECCCCeEEEEecC--------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC
Confidence 445443 578888754 3899999998875443 2211111101111112222 122234788865331
Q ss_pred -----CCCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCc-EEEE-ec-CCEEEEEeCCCCcE-EEEE
Q 011826 348 -----YFAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGS-LLLF-CK-RRALVLYNPVEKNT-RYLL 414 (476)
Q Consensus 348 -----~~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~-il~~-~~-~~~l~~ydl~t~~~-~~v~ 414 (476)
.+..-+||+++-. +=.++.+|++.. ...-+.+..+.+ +|+. .. +..|..||..|++. +.+.
T Consensus 260 ~~gsHKdpgteVWv~D~~----t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLK----THKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -TT-TTS-EEEEEEEETT----TTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCCccCCceEEEEEECC----CCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2344899999743 234566676521 111345555554 4443 33 46899999998865 3444
No 77
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=44.73 E-value=2.6e+02 Score=25.97 Aligned_cols=181 Identities=10% Similarity=0.027 Sum_probs=83.9
Q ss_pred CccEEEEcccccceee-cCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCCCc-eEEccCCCC
Q 011826 191 RNPCIICNPITGEYVT-IPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAA-WRKVGNAPW 268 (476)
Q Consensus 191 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t~~-Wr~~~~~p~ 268 (476)
...+.+||+.+++... ++.... ...+.+++..+ +++.....+ ..+.+|+..++. -..+....
T Consensus 52 ~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~g~--~l~~~~~~~---~~l~~~d~~~~~~~~~~~~~~- 115 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGTLPSGPD----------PELFALHPNGK--ILYIANEDD---NLVTVIDIETRKVLAEIPVGV- 115 (300)
T ss_pred CCeEEEEECCCCcEEEeccCCCC----------ccEEEECCCCC--EEEEEcCCC---CeEEEEECCCCeEEeEeeCCC-
Confidence 4579999999987643 443211 12345665432 232222222 368888887753 12221110
Q ss_pred CCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceEEE-EcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecC
Q 011826 269 SPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERFCV-IPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVT 347 (476)
Q Consensus 269 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~-i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~ 347 (476)
.+ ..-.+.-+|.+.+.+.. ....+..+|..+.+... +..+... . ...+ .-+|...++...
T Consensus 116 ~~--~~~~~~~dg~~l~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~~--~--------~~~~-s~dg~~l~~~~~ 176 (300)
T TIGR03866 116 EP--EGMAVSPDGKIVVNTSE------TTNMAHFIDTKTYEIVDNVLVDQRP--R--------FAEF-TADGKELWVSSE 176 (300)
T ss_pred Cc--ceEEECCCCCEEEEEec------CCCeEEEEeCCCCeEEEEEEcCCCc--c--------EEEE-CCCCCEEEEEcC
Confidence 00 00112235666555433 11246667887655432 2211110 0 1112 223443333332
Q ss_pred CCCCeEEEeeccCCCCcceEEEEEEeCC----CcceeeE--EEEecCCcEEEE--ecCCEEEEEeCCCCcEEE
Q 011826 348 YFAPPDIWVMKDYGVQESWIKQLSVDNG----YFGICRP--IKYLDDGSLLLF--CKRRALVLYNPVEKNTRY 412 (476)
Q Consensus 348 ~~~~l~IWvl~~~~~~~~W~~~~~I~~~----~~~~~~p--~~~~~~g~il~~--~~~~~l~~ydl~t~~~~~ 412 (476)
.+..+.+|-++... ...+++.. ......| +.+..+|+.++. ...+.+..||+++.++..
T Consensus 177 ~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 177 IGGTVSVIDVATRK------VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred CCCEEEEEEcCcce------eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 45678899776422 11222211 0011122 445667765443 234679999998877654
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=43.91 E-value=2.5e+02 Score=27.25 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=41.4
Q ss_pred CCCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCC-cEEEEecCCEEEEEeCCCCcEEEEEEeeCC
Q 011826 348 YFAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDG-SLLLFCKRRALVLYNPVEKNTRYLLIHEDQ 419 (476)
Q Consensus 348 ~~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g-~il~~~~~~~l~~ydl~t~~~~~v~i~g~~ 419 (476)
-+..+.+|.+++.|.-.. | -...+ .+...-++..++| +++.-..++.+-.||+.+++...|..+...
T Consensus 48 WD~tVR~wevq~~g~~~~--k-a~~~~--~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 48 WDGTVRIWEVQNSGQLVP--K-AQQSH--DGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred cCCceEEEEEecCCcccc--h-hhhcc--CCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccc
Confidence 578899999998652111 1 11111 1111223445667 555556778999999999998887765443
No 79
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=43.86 E-value=4.7e+02 Score=29.25 Aligned_cols=123 Identities=8% Similarity=0.043 Sum_probs=62.9
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCC--ceEEEE-cCCCCCCCCC------Cc-----------------cCC
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFED--ERFCVI-PAPPHFAEKP------KT-----------------RDN 328 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~--e~f~~i-~lP~~~~~~~------~~-----------------~~~ 328 (476)
.++.++|.+|..+.. ..|+++|..+ +.|+.- ..+......+ .+ .++
T Consensus 189 TPlvvgg~lYv~t~~--------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~ 260 (764)
T TIGR03074 189 TPLKVGDTLYLCTPH--------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCA 260 (764)
T ss_pred CCEEECCEEEEECCC--------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccC
Confidence 789999999987543 2899999764 566643 3332110000 00 011
Q ss_pred cceeeEEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEE-EeCCCcc-eeeEEEEecCCcEEEEe----------c
Q 011826 329 LYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLS-VDNGYFG-ICRPIKYLDDGSLLLFC----------K 396 (476)
Q Consensus 329 ~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~-I~~~~~~-~~~p~~~~~~g~il~~~----------~ 396 (476)
+ .+.+...+|+|.-.+. .+.-.+|.....+ .-.|....- ...+.+. ...|+. .+|.|++-. .
T Consensus 261 ~-rV~~~T~Dg~LiALDA--~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V--~~g~VIvG~~v~d~~~~~~~ 334 (764)
T TIGR03074 261 R-RIILPTSDARLIALDA--DTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLV--AGTTVVIGGRVADNYSTDEP 334 (764)
T ss_pred C-EEEEecCCCeEEEEEC--CCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEE--ECCEEEEEecccccccccCC
Confidence 1 3344555666655543 4556778776544 233443211 0101111 112332 234555432 1
Q ss_pred CCEEEEEeCCCCcEE
Q 011826 397 RRALVLYNPVEKNTR 411 (476)
Q Consensus 397 ~~~l~~ydl~t~~~~ 411 (476)
.+.+..||.+|+++.
T Consensus 335 ~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 335 SGVIRAFDVNTGALV 349 (764)
T ss_pred CcEEEEEECCCCcEe
Confidence 467999999998864
No 80
>PRK04792 tolB translocation protein TolB; Provisional
Probab=42.22 E-value=4.1e+02 Score=27.44 Aligned_cols=187 Identities=6% Similarity=-0.032 Sum_probs=92.9
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCCCceEEccCCCCCCc
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAAWRKVGNAPWSPI 271 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t~~Wr~~~~~p~~~~ 271 (476)
..++++|..|++...+...+. ......+.|.. ++ ++..... .+...+.+++..++..+.+.......
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g---------~~~~~~wSPDG-~~-La~~~~~-~g~~~Iy~~dl~tg~~~~lt~~~~~~- 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG---------INGAPRFSPDG-KK-LALVLSK-DGQPEIYVVDIATKALTRITRHRAID- 308 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC---------CcCCeeECCCC-CE-EEEEEeC-CCCeEEEEEECCCCCeEECccCCCCc-
Confidence 469999999998776654321 11134455543 22 3222221 12456778888888888776432111
Q ss_pred cCccceEEcce-EEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCC
Q 011826 272 AGLFPTYLNGV-IHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFA 350 (476)
Q Consensus 272 ~~~~~v~~~G~-lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~ 350 (476)
......-+|. +++.... + ....|..+|+.+.+...+........ ......-+..|++... ...
T Consensus 309 -~~p~wSpDG~~I~f~s~~---~--g~~~Iy~~dl~~g~~~~Lt~~g~~~~---------~~~~SpDG~~l~~~~~-~~g 372 (448)
T PRK04792 309 -TEPSWHPDGKSLIFTSER---G--GKPQIYRVNLASGKVSRLTFEGEQNL---------GGSITPDGRSMIMVNR-TNG 372 (448)
T ss_pred -cceEECCCCCEEEEEECC---C--CCceEEEEECCCCCEEEEecCCCCCc---------CeeECCCCCEEEEEEe-cCC
Confidence 0011222554 4444322 1 12379999998888776642211110 1112222234555443 345
Q ss_pred CeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEE-ec-C--CEEEEEeCCCCcEEEEE
Q 011826 351 PPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLF-CK-R--RALVLYNPVEKNTRYLL 414 (476)
Q Consensus 351 ~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~-~~-~--~~l~~ydl~t~~~~~v~ 414 (476)
..+||+++-.+ ..... +..... ...| .+..+|+.++. .. + ..++.+|.+++..+.+.
T Consensus 373 ~~~I~~~dl~~--g~~~~---lt~~~~-d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 373 KFNIARQDLET--GAMQV---LTSTRL-DESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred ceEEEEEECCC--CCeEE---ccCCCC-CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 68899887433 22222 111111 1133 35667754433 32 2 24777787766655554
No 81
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=41.67 E-value=1.8e+02 Score=30.60 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=62.1
Q ss_pred cccceEEEeecCCCccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCC
Q 011826 178 SCNGFLCLRKPFHRNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGG 257 (476)
Q Consensus 178 s~~GLlcl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t 257 (476)
..+|-+++..+ .+.++.||||..++.+.+-.. ......+..-|-|-+++=-|+--..+ ..+.+|++..
T Consensus 59 n~dG~lL~SGS-DD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnnriv~sgAgD----k~i~lfdl~~ 126 (758)
T KOG1310|consen 59 NADGELLASGS-DDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNNRIVLSGAGD----KLIKLFDLDS 126 (758)
T ss_pred cCCCCEEeecC-CcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCCeEEEeccCc----ceEEEEeccc
Confidence 35777777654 467899999996664433221 12335666677787766555443332 5688888764
Q ss_pred CceEEccCCC----CC--C---ccCccceEEcc-eEEEEEeeccCCCCCcceEEEEECCCc
Q 011826 258 AAWRKVGNAP----WS--P---IAGLFPTYLNG-VIHWVCDDIEDDQSCSDCIVGFDFEDE 308 (476)
Q Consensus 258 ~~Wr~~~~~p----~~--~---~~~~~~v~~~G-~lywl~~~~~~~~~~~~~Il~fD~~~e 308 (476)
-+=+..+..+ .. . ....-++.-+| ..+|.+.+ .+.|.-+|+..-
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE-------DGtirQyDiREp 180 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE-------DGTIRQYDIREP 180 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC-------CcceeeecccCC
Confidence 3222222111 00 0 00111233344 68898865 338999998763
No 82
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=41.62 E-value=3.5e+02 Score=26.47 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=26.1
Q ss_pred ceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCCCC
Q 011826 281 GVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPHFA 320 (476)
Q Consensus 281 G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~~~ 320 (476)
+.|||.--. ...|+.+|..+..-+.++.|....
T Consensus 37 ~~L~w~DI~-------~~~i~r~~~~~g~~~~~~~p~~~~ 69 (307)
T COG3386 37 GALLWVDIL-------GGRIHRLDPETGKKRVFPSPGGFS 69 (307)
T ss_pred CEEEEEeCC-------CCeEEEecCCcCceEEEECCCCcc
Confidence 567887643 338999999999999999998753
No 83
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=41.30 E-value=71 Score=25.88 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=30.0
Q ss_pred ccEEEEccccc-ceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEE
Q 011826 192 NPCIICNPITG-EYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVF 242 (476)
Q Consensus 192 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~ 242 (476)
..+.++||.|+ .|. |... ....+.+-+|+..+.|+||.+..
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~--------~~~~V~~y~~~~~ntfRIi~~~~ 52 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASK--------HAVTVSYFYDSTRNVYRIISVGG 52 (111)
T ss_pred eEEEEECCCCcceeE--eCCC--------CceeEEEEecCCCcEEEEEEecC
Confidence 35899999997 553 4432 22567888999999999998643
No 84
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.32 E-value=1.6e+02 Score=30.49 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=36.8
Q ss_pred EEEecCCcEEEEe-cCCEEEEEeCCCCc--EEEEEEeeCCCCeEEEEEecCCcccccC---CCCCceEEeeeeecccccC
Q 011826 383 IKYLDDGSLLLFC-KRRALVLYNPVEKN--TRYLLIHEDQSMIFEAITHVPSFLSLKD---VGGDNLTVQNINSRSDQFE 456 (476)
Q Consensus 383 ~~~~~~g~il~~~-~~~~l~~ydl~t~~--~~~v~i~g~~~~~~~~~~Y~~Slvs~~~---~~~~~~~~~~~~~~~~~~~ 456 (476)
+.+.++|-++... ..++++.||++..+ +..+..+.. ....+.|.+|-+-++. ..|.+.+-.-.+++.+...
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~---sVt~vafq~s~tvltkssln~G~~~~~~~vn~~s~~~~ 332 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA---SVTRVAFQPSPTVLTKSSLNSGDNQQNGSVNSSSNATG 332 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc---ceeEEEeeecceeeeccccccCccCCCceecccccccc
Confidence 4556677666554 45789999998765 333332211 2455566666433322 3444443333444444333
No 85
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=37.29 E-value=4.3e+02 Score=26.23 Aligned_cols=106 Identities=15% Similarity=0.085 Sum_probs=54.5
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCCce--EEEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCe
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDER--FCVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPP 352 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~--f~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l 352 (476)
.++..+|.+|..... ..+.++|..+.+ |.. +.+. .......+|.+++... +..+
T Consensus 236 ~p~~~~~~vy~~~~~--------g~l~a~d~~tG~~~W~~-~~~~-------------~~~p~~~~~~vyv~~~--~G~l 291 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQ--------GRVAALDLRSGRVLWKR-DASS-------------YQGPAVDDNRLYVTDA--DGVV 291 (377)
T ss_pred ccEEECCEEEEEEcC--------CEEEEEECCCCcEEEee-ccCC-------------ccCceEeCCEEEEECC--CCeE
Confidence 566778888876643 279999987654 432 2111 1112234455554432 2333
Q ss_pred EEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecCCEEEEEeCCCCcEE
Q 011826 353 DIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKRRALVLYNPVEKNTR 411 (476)
Q Consensus 353 ~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~~~l~~ydl~t~~~~ 411 (476)
..+-.++ + +..|.... +.. .....|+ ..++.+++...++.++.+|.+++++.
T Consensus 292 ~~~d~~t-G-~~~W~~~~-~~~--~~~ssp~--i~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 292 VALDRRS-G-SELWKNDE-LKY--RQLTAPA--VVGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred EEEECCC-C-cEEEcccc-ccC--CccccCE--EECCEEEEEeCCCEEEEEECCCCCEE
Confidence 3333221 1 23454321 110 1112333 23456777777788999999887654
No 86
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=36.34 E-value=4.4e+02 Score=26.17 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=64.9
Q ss_pred ceEEcceEEEEEeeccCCCCCcceEEEEECCCce--EEEEcCC-CCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCe
Q 011826 276 PTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDER--FCVIPAP-PHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPP 352 (476)
Q Consensus 276 ~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~--f~~i~lP-~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l 352 (476)
++..+|.+|....+ . .|.+||..+.+ |+.-..+ .... ..-....+|++++.... .
T Consensus 64 ~~~~dg~v~~~~~~------G--~i~A~d~~~g~~~W~~~~~~~~~~~----------~~~~~~~~G~i~~g~~~-g--- 121 (370)
T COG1520 64 PADGDGTVYVGTRD------G--NIFALNPDTGLVKWSYPLLGAVAQL----------SGPILGSDGKIYVGSWD-G--- 121 (370)
T ss_pred cEeeCCeEEEecCC------C--cEEEEeCCCCcEEecccCcCcceec----------cCceEEeCCeEEEeccc-c---
Confidence 58999999998543 2 79999998876 6544433 1111 11122237887766552 2
Q ss_pred EEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecCCEEEEEeCCCCcEE
Q 011826 353 DIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKRRALVLYNPVEKNTR 411 (476)
Q Consensus 353 ~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~~~l~~ydl~t~~~~ 411 (476)
.++.++.......|.....- ......+ .+..++.+++...++.++..|.++++.+
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~---~~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~ 176 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGG---SPYYASP-PVVGDGTVYVGTDDGHLYALNADTGTLK 176 (370)
T ss_pred eEEEEECCCCcEEEEEecCC---CeEEecC-cEEcCcEEEEecCCCeEEEEEccCCcEE
Confidence 78888773226778765322 0111111 2344556665556788999998877653
No 87
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=36.14 E-value=58 Score=20.51 Aligned_cols=22 Identities=5% Similarity=-0.096 Sum_probs=16.8
Q ss_pred cEEEEecCCEEEEEeCCCCcEE
Q 011826 390 SLLLFCKRRALVLYNPVEKNTR 411 (476)
Q Consensus 390 ~il~~~~~~~l~~ydl~t~~~~ 411 (476)
.|++...++.++.+|.+|+++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVL 23 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEE
T ss_pred EEEEeCCCCEEEEEECCCCCEE
Confidence 4555556789999999998864
No 88
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=34.62 E-value=3.4e+02 Score=28.12 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEeeccCCCCCcceEEEEECCCc-eEEEE-cCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCeEEEeeccCC
Q 011826 284 HWVCDDIEDDQSCSDCIVGFDFEDE-RFCVI-PAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYG 361 (476)
Q Consensus 284 ywl~~~~~~~~~~~~~Il~fD~~~e-~f~~i-~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~ 361 (476)
||-... +... ..+-...... +|..+ .|+...... +..++++++...
T Consensus 196 ~WK~Yk---GGtr--GklWis~d~g~tFeK~vdl~~~vS~P------------mIV~~RvYFlsD--------------- 243 (668)
T COG4946 196 HWKGYK---GGTR--GKLWISSDGGKTFEKFVDLDGNVSSP------------MIVGERVYFLSD--------------- 243 (668)
T ss_pred cccccc---CCcc--ceEEEEecCCcceeeeeecCCCcCCc------------eEEcceEEEEec---------------
Q ss_pred CCcceEEEEEEeCC--------CcceeeEEEEecCCcEEEEecCCEEEEEeCCCCcEEEEEE
Q 011826 362 VQESWIKQLSVDNG--------YFGICRPIKYLDDGSLLLFCKRRALVLYNPVEKNTRYLLI 415 (476)
Q Consensus 362 ~~~~W~~~~~I~~~--------~~~~~~p~~~~~~g~il~~~~~~~l~~ydl~t~~~~~v~i 415 (476)
.+.--.+|++++. .+.-+.|-....+|+-++....+.++.||++|.++++++|
T Consensus 244 -~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI 304 (668)
T COG4946 244 -HEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDI 304 (668)
T ss_pred -ccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeec
No 89
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=33.76 E-value=4.7e+02 Score=25.65 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=50.3
Q ss_pred cceEEc-ceEEEEEeeccCCCCCcceEEEEECCCceEEEEcCCCC-CCCCCCccCCcceeeEEee-CCeEEEEecCC-CC
Q 011826 275 FPTYLN-GVIHWVCDDIEDDQSCSDCIVGFDFEDERFCVIPAPPH-FAEKPKTRDNLYDMNLGVL-GGCLSICDVTY-FA 350 (476)
Q Consensus 275 ~~v~~~-G~lywl~~~~~~~~~~~~~Il~fD~~~e~f~~i~lP~~-~~~~~~~~~~~~~~~L~~~-~G~L~~~~~~~-~~ 350 (476)
.++... |.+................++..|=..++|+....+.. ... ....+.++ +|+|.+..... ..
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~--------~e~~i~el~dG~l~~~~R~~~~~ 221 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGC--------SECSVVELSDGKLYMYTRDNSGG 221 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCC--------cCCEEEEecCCEEEEEEeeCCCC
Confidence 456664 88776654421111122246666667789987554433 111 15567777 79998765533 34
Q ss_pred CeEEEeeccCCCCcceEEEEEE
Q 011826 351 PPDIWVMKDYGVQESWIKQLSV 372 (476)
Q Consensus 351 ~l~IWvl~~~~~~~~W~~~~~I 372 (476)
.+.+..-.|.| .+|+.....
T Consensus 222 ~~~~~~S~D~G--~tWs~~~~~ 241 (351)
T cd00260 222 RRPVYESRDMG--TTWTEALGT 241 (351)
T ss_pred cEEEEEEcCCC--cCcccCcCC
Confidence 45555555554 799986543
No 90
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.11 E-value=1.6e+02 Score=29.29 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=65.2
Q ss_pred cEEEEEEeCCCceEEccCCCCCCccCccceEEcc-eEEEEEee--------------------------------ccCCC
Q 011826 248 RTAEIYSLGGAAWRKVGNAPWSPIAGLFPTYLNG-VIHWVCDD--------------------------------IEDDQ 294 (476)
Q Consensus 248 ~~~eVyss~t~~Wr~~~~~p~~~~~~~~~v~~~G-~lywl~~~--------------------------------~~~~~ 294 (476)
..+..|+..+++|...+......+....++..+| .+|.+..- ...+.
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy 192 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDY 192 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHh
Confidence 4588999999999988843212232223344444 55554311 00111
Q ss_pred CCcceEEEEECCCceEEEEc-CCCCCCCCCCccCCcceeeEEeeCCeEEEEecC---CCCCeEEEeeccCCCCcceEEEE
Q 011826 295 SCSDCIVGFDFEDERFCVIP-APPHFAEKPKTRDNLYDMNLGVLGGCLSICDVT---YFAPPDIWVMKDYGVQESWIKQL 370 (476)
Q Consensus 295 ~~~~~Il~fD~~~e~f~~i~-lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~---~~~~l~IWvl~~~~~~~~W~~~~ 370 (476)
.....+++||..+++|+..- .|-.... ....+.-+++|.++..+ ....-++|+.+=.++...|.+.-
T Consensus 193 ~~n~ev~sy~p~~n~W~~~G~~pf~~~a---------Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 193 FFNKEVLSYDPSTNQWRNLGENPFYGNA---------GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred cccccccccccccchhhhcCcCcccCcc---------CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 22336999999999999885 5644332 11122334457666543 12346667665443467899874
Q ss_pred EE
Q 011826 371 SV 372 (476)
Q Consensus 371 ~I 372 (476)
..
T Consensus 264 ~l 265 (381)
T COG3055 264 DL 265 (381)
T ss_pred CC
Confidence 43
No 91
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=31.79 E-value=1e+02 Score=24.08 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.1
Q ss_pred CCEEEEEeCCCCcEEEEE
Q 011826 397 RRALVLYNPVEKNTRYLL 414 (476)
Q Consensus 397 ~~~l~~ydl~t~~~~~v~ 414 (476)
.++++.||+.|++.+.+-
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 478999999999987765
No 92
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=30.91 E-value=4.6e+02 Score=24.72 Aligned_cols=144 Identities=14% Similarity=0.147 Sum_probs=74.4
Q ss_pred CceEEccCCCCCCccCccceEEcceEEEEEeeccCCCCCcceEEEEECCCceE-EEEcCCCCCCCCCC---ccCCcceee
Q 011826 258 AAWRKVGNAPWSPIAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDERF-CVIPAPPHFAEKPK---TRDNLYDMN 333 (476)
Q Consensus 258 ~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e~f-~~i~lP~~~~~~~~---~~~~~~~~~ 333 (476)
+.|...-..|. +......|..||++|.-... +..|+.||+.++.= ....+|........ +-+.. .+.
T Consensus 56 ~~~~~~~~lp~-~~~gTg~VVynGs~yynk~~-------t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~s-diD 126 (249)
T KOG3545|consen 56 GRKAEKYRLPY-SWDGTGHVVYNGSLYYNKAG-------TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHS-DID 126 (249)
T ss_pred cCcceEEeCCC-CccccceEEEcceEEeeccC-------CcceEEEEeecceeeeeeeccccccCCCcccccCCCc-ccc
Confidence 34544444342 11222679999999997743 34899999999543 34466765543321 11111 456
Q ss_pred EEeeCCeEEEEecCC--CCCeEEEeeccC--CCCcceEEEEEEeCCCcceeeEEEEecCCcEEEEe----cCCEE-EEEe
Q 011826 334 LGVLGGCLSICDVTY--FAPPDIWVMKDY--GVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFC----KRRAL-VLYN 404 (476)
Q Consensus 334 L~~~~G~L~~~~~~~--~~~l~IWvl~~~--~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~----~~~~l-~~yd 404 (476)
+++.+..|.++.... ...+.|=.|+.. ..+..|.-. ++....+- +|+--|.+.... ....+ +.||
T Consensus 127 ~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~k~~~~~----aF~iCGvLY~v~S~~~~~~~i~yayd 200 (249)
T KOG3545|consen 127 LAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LPKRSAGN----AFMICGVLYVVHSYNCTHTQISYAYD 200 (249)
T ss_pred ceecccceeEEecccccCCcEEeeccCHHHhheeeeeccc--cCCCCcCc----eEEEeeeeEEEeccccCCceEEEEEE
Confidence 777776787665422 334555666542 224566321 11111111 111112222222 12333 6899
Q ss_pred CCCCcEEEEEEe
Q 011826 405 PVEKNTRYLLIH 416 (476)
Q Consensus 405 l~t~~~~~v~i~ 416 (476)
..+++.+.+.++
T Consensus 201 t~~~~~~~~~ip 212 (249)
T KOG3545|consen 201 TTTGTQERIDLP 212 (249)
T ss_pred cCCCceeccccc
Confidence 988887776654
No 93
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=30.50 E-value=26 Score=27.61 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHhcCCccccc
Q 011826 47 STIIDLPSHILIDILSRLPLKSIF 70 (476)
Q Consensus 47 ~~~~~LP~Dll~eIL~RLP~ksL~ 70 (476)
..|..||.|+-..||..|+-++|.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 789999999999999999977764
No 94
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=29.28 E-value=2.2e+02 Score=22.69 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=35.5
Q ss_pred cEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCcc-ccEEEEEE
Q 011826 193 PCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFL-NRTAEIYS 254 (476)
Q Consensus 193 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~-~~~~eVys 254 (476)
++++.+|.+++|...= . ....+.+..|+..+.|.|+.....+.. ...+++|.
T Consensus 10 ~v~~~~~~~~~W~~~~--~--------~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~ 62 (104)
T cd00837 10 QVYTADPSTGKWVPAS--G--------GTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYK 62 (104)
T ss_pred EEEEECCCCCceEECC--C--------CeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecC
Confidence 5889999999997521 1 235688888998889998887554322 33455544
No 95
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.24 E-value=95 Score=19.60 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=15.9
Q ss_pred ecCCcEEEEecCCEEEEEeCCC
Q 011826 386 LDDGSLLLFCKRRALVLYNPVE 407 (476)
Q Consensus 386 ~~~g~il~~~~~~~l~~ydl~t 407 (476)
..+|.+++...++.++.+|.+|
T Consensus 19 v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 19 VAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp ECTSEEEEE-TTSEEEEEETT-
T ss_pred EECCEEEEEcCCCEEEEEeCCC
Confidence 4456777777889999999875
No 96
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=28.22 E-value=8.7e+02 Score=27.06 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=40.8
Q ss_pred CCCCeEEEeeccCC----CCcceEEEEEEeCCCcceeeEEEEecCCcEEEEecCCEEEEEeCCC
Q 011826 348 YFAPPDIWVMKDYG----VQESWIKQLSVDNGYFGICRPIKYLDDGSLLLFCKRRALVLYNPVE 407 (476)
Q Consensus 348 ~~~~l~IWvl~~~~----~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~~~~~~l~~ydl~t 407 (476)
.+..+.||++.+.. ....|+.+. |..=........++..||.++...-++.+..||..+
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEee-eeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 56789999996543 246799864 332000111234567889999988899999999998
No 97
>PF13013 F-box-like_2: F-box-like domain
Probab=27.53 E-value=25 Score=28.56 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHhcCCccccceeeccch
Q 011826 48 TIIDLPSHILIDILSRLPLKSIFISRCVCK 77 (476)
Q Consensus 48 ~~~~LP~Dll~eIL~RLP~ksL~R~r~VCK 77 (476)
.+.+||+||+..|+..-..+.+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 356799999999999999888766555555
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.64 E-value=6.2e+02 Score=24.85 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=49.1
Q ss_pred ccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEEcCccccEEEEEEeCCCc-eEEccCCCCCC
Q 011826 192 NPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVFDDFLNRTAEIYSLGGAA-WRKVGNAPWSP 270 (476)
Q Consensus 192 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~eVyss~t~~-Wr~~~~~p~~~ 270 (476)
..+-.||-++|+-...-++.. ....+-+++..+.|-|+. ...+.||-+++.+ -+++..+-..
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~-------~~~i~i~q~d~A~v~~~i~~~~r~- 211 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG-------RNKIDIYQLDNASVFREIENPKRI- 211 (362)
T ss_pred ceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe-------ccEEEEEecccHhHhhhhhccccc-
Confidence 457778888887543333221 122366777655565543 3578999888753 3444433100
Q ss_pred ccCccceEEcceEEEEEeeccCCCCCcceEEEEECCC
Q 011826 271 IAGLFPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFED 307 (476)
Q Consensus 271 ~~~~~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~ 307 (476)
.+..+.++..-....+ . ..|..+|..+
T Consensus 212 ---l~~~~l~~~~L~vG~d-----~--~~i~~~D~ds 238 (362)
T KOG0294|consen 212 ---LCATFLDGSELLVGGD-----N--EWISLKDTDS 238 (362)
T ss_pred ---eeeeecCCceEEEecC-----C--ceEEEeccCC
Confidence 0334445544333322 2 3789999887
No 99
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=25.78 E-value=2.8e+02 Score=22.82 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=29.1
Q ss_pred CCEEEEEeCCCCcEEEEEEe---eCCCCeEEEEEecCCcccccC
Q 011826 397 RRALVLYNPVEKNTRYLLIH---EDQSMIFEAITHVPSFLSLKD 437 (476)
Q Consensus 397 ~~~l~~ydl~t~~~~~v~i~---g~~~~~~~~~~Y~~Slvs~~~ 437 (476)
...+++||+++++++.+..+ .........+.|...|..+..
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~ 62 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSY 62 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEe
Confidence 46899999999999999875 222234556677777776544
No 100
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=25.75 E-value=6.8e+02 Score=25.03 Aligned_cols=110 Identities=16% Similarity=0.290 Sum_probs=57.0
Q ss_pred ceEEEEECCCceEEEEcCCCCCCCCC--CccCCcceeeEEeeCCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEeC-
Q 011826 298 DCIVGFDFEDERFCVIPAPPHFAEKP--KTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVDN- 374 (476)
Q Consensus 298 ~~Il~fD~~~e~f~~i~lP~~~~~~~--~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~~- 374 (476)
+.-..+|..+..| ...++.+...-. .+.-++..+--+.+.|.|.+... ...-+.|.+.....+-.|.+-|....
T Consensus 86 D~AflW~~~~ge~-~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~--stg~~~~~~~~e~~dieWl~WHp~a~i 162 (399)
T KOG0296|consen 86 DLAFLWDISTGEF-AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV--STGGEQWKLDQEVEDIEWLKWHPRAHI 162 (399)
T ss_pred ceEEEEEccCCcc-eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc--ccCceEEEeecccCceEEEEecccccE
Confidence 3677777777763 334444433210 01111213333455666666554 45667777753322457877765433
Q ss_pred ---C-----------Cc-cee-------eEE---EEecCCc-EEEEecCCEEEEEeCCCCcE
Q 011826 375 ---G-----------YF-GIC-------RPI---KYLDDGS-LLLFCKRRALVLYNPVEKNT 410 (476)
Q Consensus 375 ---~-----------~~-~~~-------~p~---~~~~~g~-il~~~~~~~l~~ydl~t~~~ 410 (476)
+ +. ... .|. .+..+|+ ++-...++.++.+|++|..-
T Consensus 163 llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred EEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 1 00 000 111 2345675 44445678999999998853
No 101
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=25.67 E-value=6.1e+02 Score=24.46 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=55.9
Q ss_pred cceEEEEEeeccCCCCCcceEEEEECCC-ceEEE-----EcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCeE
Q 011826 280 NGVIHWVCDDIEDDQSCSDCIVGFDFED-ERFCV-----IPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPPD 353 (476)
Q Consensus 280 ~G~lywl~~~~~~~~~~~~~Il~fD~~~-e~f~~-----i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~ 353 (476)
+|...+.+.. ..+.|..||+.+ ..... +..|..... + .+.+..-+..|+++.. ....+.
T Consensus 136 ~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p-------~-~~~~~pdg~~lyv~~~-~~~~v~ 200 (330)
T PRK11028 136 DNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP-------R-HMVFHPNQQYAYCVNE-LNSSVD 200 (330)
T ss_pred CCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCC-------c-eEEECCCCCEEEEEec-CCCEEE
Confidence 5655555533 234899999876 33321 223332111 1 2323322234555543 567899
Q ss_pred EEeeccCCCCcceEEEEEEeCCC---cceeeE--EEEecCCcEEEEec--CCEEEEEeCCC
Q 011826 354 IWVMKDYGVQESWIKQLSVDNGY---FGICRP--IKYLDDGSLLLFCK--RRALVLYNPVE 407 (476)
Q Consensus 354 IWvl~~~~~~~~W~~~~~I~~~~---~~~~~p--~~~~~~g~il~~~~--~~~l~~ydl~t 407 (476)
+|.+++.. ...+....+...+ .....+ +.+..+|+.++..+ .+.+..|+.++
T Consensus 201 v~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 201 VWQLKDPH--GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEEeCCC--CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 99997532 2444444444311 111122 44567887666542 46777777643
No 102
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=25.64 E-value=2.1e+02 Score=23.05 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=29.1
Q ss_pred cEEEEcccccc-eeecCCCCCCCCcCccceeEEEEeEeCCCCCeEEEEEEE
Q 011826 193 PCIICNPITGE-YVTIPKPAAEDDKKTLRTVISGFGYSFRSKQYKVLRLVF 242 (476)
Q Consensus 193 ~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~ 242 (476)
.++..+|-+++ |... . ....+.+..|...+.|.|..+..
T Consensus 17 ~v~~~~p~~~~~W~~~-~----------~~g~v~~v~d~~~~~y~I~~~~~ 56 (111)
T PF00568_consen 17 QVYQADPDTKRQWSPV-K----------GTGVVCFVKDNSRRSYFIRLYDL 56 (111)
T ss_dssp EEEEEETTTSESEEES-S----------SEEEEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEcCCCCcEeeC-C----------eEEEEEEEEECCCCEEEEEEEEc
Confidence 58899999988 8754 1 23567788898888998877653
No 103
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.41 E-value=8.3e+02 Score=25.89 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=58.2
Q ss_pred cceEEcceEEEEEeeccCCCCCcceEEEEECCC--ceEEEE-cCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCC
Q 011826 275 FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFED--ERFCVI-PAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAP 351 (476)
Q Consensus 275 ~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~--e~f~~i-~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~ 351 (476)
.++..+|.+|..... ..|.++|..+ +.|+.- ..|........ +......++..+|++++... .
T Consensus 64 tPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~--~~~~~rg~av~~~~v~v~t~----d 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMC--CDVVNRGVALYDGKVFFGTL----D 129 (527)
T ss_pred CCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccc--cccccccceEECCEEEEEcC----C
Confidence 678889999986532 2799999875 556543 33322111000 00001113344556555432 1
Q ss_pred eEEEeeccCCCCcceEEEEEEeCC-Cc-ceeeEEEEecCCcEEEEec------CCEEEEEeCCCCcE
Q 011826 352 PDIWVMKDYGVQESWIKQLSVDNG-YF-GICRPIKYLDDGSLLLFCK------RRALVLYNPVEKNT 410 (476)
Q Consensus 352 l~IWvl~~~~~~~~W~~~~~I~~~-~~-~~~~p~~~~~~g~il~~~~------~~~l~~ydl~t~~~ 410 (476)
=.|..++....+..|.... .+.. .. ....|+. .+|.|++... .+.|+.+|.+|++.
T Consensus 130 g~l~ALDa~TGk~~W~~~~-~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKN-GDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred CEEEEEECCCCCEEeeccc-ccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 1345554332245565432 1110 01 1123432 2445555432 46899999998874
No 104
>PF15408 PH_7: Pleckstrin homology domain
Probab=23.70 E-value=27 Score=26.76 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=20.1
Q ss_pred ccccceeeccchhhhhhhCChHHH
Q 011826 66 LKSIFISRCVCKTWHILISDPLFA 89 (476)
Q Consensus 66 ~ksL~R~r~VCK~W~~lissp~F~ 89 (476)
++-..-.+-|||+|-..+.+|+|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 455666788999999999999985
No 105
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=21.58 E-value=72 Score=30.30 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCCCCCCHHHHHHHHhcCC-ccccceeeccchhhhhhhCChHHH
Q 011826 46 YSTIIDLPSHILIDILSRLP-LKSIFISRCVCKTWHILISDPLFA 89 (476)
Q Consensus 46 ~~~~~~LP~Dll~eIL~RLP-~ksL~R~r~VCK~W~~lissp~F~ 89 (476)
...+.+||.+++.+||.||| -.+|.-...|--.-..++++....
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iW 243 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIW 243 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHH
Confidence 45677999999999999999 778887777766555666554433
No 106
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=20.81 E-value=3.8e+02 Score=26.05 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=40.8
Q ss_pred CCeEEEEecCCCCCeEEEeeccCCCCcceEEEEEEeCCCcceeeEEEEecCCcEEEE-ecCCEEEEEeCCCCcE
Q 011826 338 GGCLSICDVTYFAPPDIWVMKDYGVQESWIKQLSVDNGYFGICRPIKYLDDGSLLLF-CKRRALVLYNPVEKNT 410 (476)
Q Consensus 338 ~G~L~~~~~~~~~~l~IWvl~~~~~~~~W~~~~~I~~~~~~~~~p~~~~~~g~il~~-~~~~~l~~ydl~t~~~ 410 (476)
+|.+... ...+..+-+|-.-+.. +.-|+.+ ++.+-.--+....++..++. ..+..+..+|.+|++-
T Consensus 58 ~gs~~aS-gG~Dr~I~LWnv~gdc-eN~~~lk-----gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFAS-GGSDRAIVLWNVYGDC-ENFWVLK-----GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR 124 (338)
T ss_pred CCCeEee-cCCcceEEEEeccccc-cceeeec-----cccceeEeeeeccCCCEEEEecCCceEEEEeccccee
Confidence 4443333 3357789999865444 4678876 22222233445567766555 5678999999998863
No 107
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=20.78 E-value=96 Score=23.34 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=10.6
Q ss_pred ccEEEE-cccccceeecC
Q 011826 192 NPCIIC-NPITGEYVTIP 208 (476)
Q Consensus 192 ~~~~V~-NP~T~~~~~LP 208 (476)
..++.| ||+||+..-|=
T Consensus 26 k~Yy~Yr~P~tGk~~~LG 43 (75)
T PF09003_consen 26 KGYYQYRNPITGKEHGLG 43 (75)
T ss_dssp -SEEEEE-TTTS-EEEEE
T ss_pred eeEEEEecCCCCceeeCC
Confidence 357777 99999987653
No 108
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=20.18 E-value=1.2e+03 Score=25.99 Aligned_cols=155 Identities=17% Similarity=0.084 Sum_probs=0.0
Q ss_pred ecccceEEEeecCCCccEEEEcccccceeecCCCCCCCCcCccceeEEEEeEeC-CCCCeEEEEE-----EEcCcc----
Q 011826 177 NSCNGFLCLRKPFHRNPCIICNPITGEYVTIPKPAAEDDKKTLRTVISGFGYSF-RSKQYKVLRL-----VFDDFL---- 246 (476)
Q Consensus 177 ~s~~GLlcl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~g~d~-~~~~yKVv~~-----~~~~~~---- 246 (476)
+|.+=|+.+..+.. +++||..||+...==. ........|-+|| ...+|-|.-. ..+..+
T Consensus 123 ~Srd~LlaIh~ss~---lvLwntdtG~k~Wk~~--------ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSST---LVLWNTDTGEKFWKYD--------YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred cchheeEEecCCcE---EEEEEccCCceeeccc--------cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Q ss_pred -ccEEEEEEeCC--------------CceEEccCCCCCCccCc---cceEEcceEEEEEeeccCCCCCcceEEEEECCCc
Q 011826 247 -NRTAEIYSLGG--------------AAWRKVGNAPWSPIAGL---FPTYLNGVIHWVCDDIEDDQSCSDCIVGFDFEDE 308 (476)
Q Consensus 247 -~~~~eVyss~t--------------~~Wr~~~~~p~~~~~~~---~~v~~~G~lywl~~~~~~~~~~~~~Il~fD~~~e 308 (476)
...-++|-... ++=..-+..-.++.+.. ..-...+.++-...+ .|+.||++=|
T Consensus 192 ~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr---------ellv~dle~~ 262 (1062)
T KOG1912|consen 192 DVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR---------ELLVFDLEYE 262 (1062)
T ss_pred CCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc---------ceEEEcchhh
Q ss_pred eE-EEEcCCCCCCCCCCccCCcceeeEEeeCCeEEEEecCCCCCeEEEeeccC
Q 011826 309 RF-CVIPAPPHFAEKPKTRDNLYDMNLGVLGGCLSICDVTYFAPPDIWVMKDY 360 (476)
Q Consensus 309 ~f-~~i~lP~~~~~~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~l~IWvl~~~ 360 (476)
.. ..+++|...... ....-.--++.|+..+. ++.+.||+.+++
T Consensus 263 ~~l~vvpier~~akf-------v~vlP~~~rd~LfclH~--nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 263 CCLAVVPIERGGAKF-------VDVLPDPRRDALFCLHS--NGRLTIRVRKEE 306 (1062)
T ss_pred ceeEEEEeccCCcce-------eEeccCCCcceEEEEec--CCeEEEEEeecc
No 109
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=20.03 E-value=35 Score=27.66 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.2
Q ss_pred cCCCCCCCCHHHHHHHHhc
Q 011826 45 HYSTIIDLPSHILIDILSR 63 (476)
Q Consensus 45 ~~~~~~~LP~Dll~eIL~R 63 (476)
++..+..||+||-.|||..
T Consensus 2 Dp~fLaaLPeDiR~Evl~~ 20 (108)
T PF14377_consen 2 DPEFLAALPEDIREEVLAQ 20 (108)
T ss_pred CHHHHHHCCHHHHHHHHHH
Confidence 4666778999999999753
No 110
>PF13919 ASXH: Asx homology domain
Probab=20.01 E-value=40 Score=28.71 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=23.3
Q ss_pred hccCCCCCCCCHHHHHHHHhcCCcccc
Q 011826 43 AYHYSTIIDLPSHILIDILSRLPLKSI 69 (476)
Q Consensus 43 ~~~~~~~~~LP~Dll~eIL~RLP~ksL 69 (476)
-.++..|..||.+--.+||..||..+.
T Consensus 38 L~N~~tw~~L~~eeq~eLl~LLP~~D~ 64 (138)
T PF13919_consen 38 LLNPETWSCLPEEEQQELLKLLPEVDR 64 (138)
T ss_pred HhCHHHHhcCCHHHHHHHHHhCCCCCc
Confidence 356889999999999999999997654
Done!