Query 011827
Match_columns 476
No_of_seqs 372 out of 2543
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1232 Proteins containing th 100.0 1.6E-84 3.5E-89 636.0 25.2 424 51-475 23-450 (511)
2 PLN02805 D-lactate dehydrogena 100.0 3.4E-62 7.5E-67 523.8 46.2 384 75-470 91-480 (555)
3 PRK11230 glycolate oxidase sub 100.0 1.2E-60 2.5E-65 508.8 45.1 382 80-469 19-402 (499)
4 TIGR00387 glcD glycolate oxida 100.0 8.4E-56 1.8E-60 463.3 37.8 343 120-469 1-345 (413)
5 COG0277 GlcD FAD/FMN-containin 100.0 1.9E-52 4E-57 443.1 39.2 377 86-468 2-385 (459)
6 PRK11183 D-lactate dehydrogena 100.0 2.2E-44 4.7E-49 375.9 27.8 259 80-342 3-315 (564)
7 KOG1231 Proteins containing th 100.0 1.1E-40 2.5E-45 334.9 13.0 374 85-470 29-430 (505)
8 PLN02441 cytokinin dehydrogena 100.0 7E-38 1.5E-42 332.0 31.4 339 93-445 41-407 (525)
9 PRK11282 glcE glycolate oxidas 100.0 6.4E-37 1.4E-41 311.7 22.7 190 125-317 3-193 (352)
10 TIGR01676 GLDHase galactonolac 100.0 1.8E-33 3.8E-38 298.3 22.8 201 107-318 52-252 (541)
11 TIGR01678 FAD_lactone_ox sugar 100.0 2.2E-32 4.7E-37 287.4 22.1 200 107-317 5-204 (438)
12 TIGR01679 bact_FAD_ox FAD-link 100.0 4.5E-32 9.7E-37 284.3 20.9 198 107-318 2-199 (419)
13 TIGR01677 pln_FAD_oxido plant- 100.0 2.3E-31 4.9E-36 285.5 22.0 206 104-317 19-234 (557)
14 KOG1233 Alkyl-dihydroxyacetone 100.0 1.6E-30 3.5E-35 256.4 19.5 262 66-333 103-379 (613)
15 PLN02465 L-galactono-1,4-lacto 100.0 2.8E-29 6.2E-34 268.2 22.7 201 107-318 87-287 (573)
16 PF01565 FAD_binding_4: FAD bi 100.0 1.4E-28 3E-33 219.6 13.9 139 117-256 1-139 (139)
17 PRK13905 murB UDP-N-acetylenol 99.9 1E-25 2.2E-30 226.2 16.1 173 99-293 16-193 (298)
18 PRK14652 UDP-N-acetylenolpyruv 99.9 1.9E-24 4.2E-29 216.6 18.5 193 78-293 2-196 (302)
19 PRK13906 murB UDP-N-acetylenol 99.9 3.7E-24 8.1E-29 215.1 19.8 192 78-292 2-197 (307)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 1.6E-24 3.6E-29 217.6 16.8 189 81-292 5-197 (305)
21 TIGR00179 murB UDP-N-acetyleno 99.9 1E-22 2.2E-27 202.9 14.7 164 110-291 6-174 (284)
22 KOG4730 D-arabinono-1, 4-lacto 99.9 2.1E-22 4.5E-27 203.5 16.4 188 112-309 45-232 (518)
23 PRK14653 UDP-N-acetylenolpyruv 99.9 2E-22 4.2E-27 201.2 16.1 190 80-293 3-194 (297)
24 PRK13903 murB UDP-N-acetylenol 99.9 8.9E-22 1.9E-26 201.1 15.6 173 100-293 19-197 (363)
25 PRK14649 UDP-N-acetylenolpyruv 99.8 1.2E-20 2.6E-25 188.9 14.2 175 100-293 7-193 (295)
26 PRK14650 UDP-N-acetylenolpyruv 99.8 1.8E-19 4E-24 179.5 13.5 180 94-294 13-196 (302)
27 COG0812 MurB UDP-N-acetylmuram 99.8 9E-19 1.9E-23 172.1 16.7 173 100-292 7-183 (291)
28 PRK00046 murB UDP-N-acetylenol 99.8 8.4E-19 1.8E-23 177.3 12.7 171 100-292 7-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.8 3.7E-18 7.9E-23 172.5 13.7 142 94-247 10-156 (354)
30 PF02913 FAD-oxidase_C: FAD li 99.7 6.3E-17 1.4E-21 156.6 7.7 174 292-471 1-181 (248)
31 PRK14651 UDP-N-acetylenolpyruv 99.7 9.6E-16 2.1E-20 150.9 14.5 160 100-292 7-170 (273)
32 KOG1262 FAD-binding protein DI 99.6 1.7E-15 3.6E-20 150.8 7.9 148 164-316 105-252 (543)
33 PRK13904 murB UDP-N-acetylenol 99.5 8.2E-14 1.8E-18 136.0 11.2 156 99-294 4-161 (257)
34 PRK09799 putative oxidoreducta 97.4 0.00034 7.3E-09 69.2 6.3 144 119-288 4-155 (258)
35 PF00941 FAD_binding_5: FAD bi 97.1 0.00014 3.1E-09 67.3 0.8 103 118-225 3-116 (171)
36 TIGR03312 Se_sel_red_FAD proba 97.1 0.00087 1.9E-08 66.2 6.3 101 120-225 4-110 (257)
37 PRK09971 xanthine dehydrogenas 96.9 0.0061 1.3E-07 61.3 10.4 102 119-225 6-119 (291)
38 TIGR02963 xanthine_xdhA xanthi 96.6 0.0037 8E-08 67.0 6.3 106 116-225 191-304 (467)
39 TIGR03195 4hydrxCoA_B 4-hydrox 96.1 0.006 1.3E-07 62.1 4.3 102 119-225 6-118 (321)
40 TIGR03199 pucC xanthine dehydr 95.9 0.0055 1.2E-07 60.7 3.2 98 123-224 1-109 (264)
41 PLN02906 xanthine dehydrogenas 94.6 0.057 1.2E-06 64.9 6.7 104 118-225 229-351 (1319)
42 PLN00192 aldehyde oxidase 94.5 0.062 1.3E-06 64.7 6.7 109 117-225 233-353 (1344)
43 TIGR02969 mam_aldehyde_ox alde 94.3 0.081 1.8E-06 63.7 6.9 104 118-225 237-359 (1330)
44 COG4630 XdhA Xanthine dehydrog 93.6 0.22 4.8E-06 51.0 7.3 132 112-254 198-340 (493)
45 COG1319 CoxM Aerobic-type carb 92.2 0.37 7.9E-06 48.3 6.7 106 117-226 3-119 (284)
46 PF09330 Lact-deh-memb: D-lact 66.7 12 0.00026 37.2 5.5 46 298-343 1-46 (291)
47 KOG0430 Xanthine dehydrogenase 55.4 20 0.00043 42.2 5.5 106 118-227 215-334 (1257)
48 COG4981 Enoyl reductase domain 41.2 35 0.00075 37.2 4.3 32 114-145 149-181 (717)
49 PRK04322 peptidyl-tRNA hydrola 37.5 52 0.0011 28.3 4.2 43 105-149 38-81 (113)
50 PF00076 RRM_1: RNA recognitio 31.9 1.1E+02 0.0024 22.2 4.9 47 266-316 13-59 (70)
51 PF14259 RRM_6: RNA recognitio 31.7 1.6E+02 0.0034 21.8 5.7 46 267-316 14-59 (70)
52 KOG3282 Uncharacterized conser 28.2 83 0.0018 29.4 4.1 32 112-143 120-151 (190)
53 smart00361 RRM_1 RNA recogniti 26.0 1.2E+02 0.0026 23.0 4.2 50 267-316 4-57 (70)
54 PF15608 PELOTA_1: PELOTA RNA 25.9 76 0.0016 26.7 3.1 35 114-148 53-88 (100)
55 cd02742 GH20_hexosaminidase Be 25.3 66 0.0014 32.4 3.2 23 123-145 68-90 (303)
56 cd06568 GH20_SpHex_like A subg 24.7 68 0.0015 32.8 3.2 23 124-146 72-94 (329)
57 cd07033 TPP_PYR_DXS_TK_like Py 24.5 98 0.0021 27.8 3.9 33 114-146 120-153 (156)
58 KOG1199 Short-chain alcohol de 24.4 73 0.0016 29.8 3.0 61 118-178 56-121 (260)
59 cd06565 GH20_GcnA-like Glycosy 23.7 73 0.0016 32.1 3.2 23 123-145 56-78 (301)
60 PF07317 YcgR: Flagellar regul 23.1 1.9E+02 0.0042 24.3 5.2 67 123-205 4-70 (108)
61 PF02601 Exonuc_VII_L: Exonucl 23.0 1.2E+02 0.0026 30.6 4.6 35 117-151 42-88 (319)
62 PF00728 Glyco_hydro_20: Glyco 22.8 67 0.0015 32.6 2.8 29 123-151 69-99 (351)
63 PF01981 PTH2: Peptidyl-tRNA h 22.5 1.5E+02 0.0032 25.3 4.5 37 113-149 47-84 (116)
64 KOG2212 Alpha-amylase [Carbohy 22.1 1.9E+02 0.0041 30.0 5.6 65 81-145 41-113 (504)
65 cd06570 GH20_chitobiase-like_1 21.8 85 0.0018 31.9 3.2 28 124-151 65-94 (311)
66 cd06563 GH20_chitobiase-like T 21.6 84 0.0018 32.5 3.2 22 125-146 84-105 (357)
67 PF02779 Transket_pyr: Transke 21.1 1.4E+02 0.003 27.4 4.2 35 114-148 134-171 (178)
68 cd06562 GH20_HexA_HexB-like Be 20.9 89 0.0019 32.2 3.2 28 125-152 68-97 (348)
69 cd02407 PTH2_family Peptidyl-t 20.9 1.6E+02 0.0035 25.3 4.3 32 112-143 45-76 (115)
No 1
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.6e-84 Score=636.04 Aligned_cols=424 Identities=60% Similarity=1.012 Sum_probs=408.5
Q ss_pred cccccceeccccccc-ccccccCccccCCCHHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHH
Q 011827 51 FGNASTIRYRCFGSE-ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEV 129 (476)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV 129 (476)
+..+....+..||++ |++++|+|.|+.++++++..+++++|++.+.+++++++.|++||+.+|+|+...|++|+|++||
T Consensus 23 ~~~~~~~~~~~~~sea~~~v~R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eV 102 (511)
T KOG1232|consen 23 FNAILTRIRTPFTSEAYPLVQRNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEV 102 (511)
T ss_pred chhhhceeecccccccchhhhcCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHH
Confidence 334445667779999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCC
Q 011827 130 SQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDL 209 (476)
Q Consensus 130 ~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~ 209 (476)
++|+++|+++++.|+|+||+|++.|+++|+.+.||+++.+||+|+++|+..++++|+||+.++++..+|+++|+++|.|.
T Consensus 103 S~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDL 182 (511)
T KOG1232|consen 103 SAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDL 182 (511)
T ss_pred HHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEc
Q 011827 210 GAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHT 289 (476)
Q Consensus 210 g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l 289 (476)
|+.++|.|||+++|||||.+..|||+...+|+++|+|+|+|+++......+|+|+|||+.++|+||||++||||++++-+
T Consensus 183 gAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~ 262 (511)
T KOG1232|consen 183 GAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILA 262 (511)
T ss_pred CCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEeecCCHHHHHHHHHHHHHHcCCceeEEEEeCHHHHHHHHHHhcCCCCCCCCCCcceEEEEeecCCchhh
Q 011827 290 PPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESY 369 (476)
Q Consensus 290 ~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~ 369 (476)
.|+|+....+++..++++++++++..+++.++++++|||+||+.+++++..++.....|++++ .+||+|||+.|++.++
T Consensus 263 ~~kpksvn~af~gi~sf~~v~k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~-~pFyiLiETsGSn~dh 341 (511)
T KOG1232|consen 263 PPKPKSVNVAFIGIESFDDVQKVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDE-HPFYILIETSGSNKDH 341 (511)
T ss_pred cCCCcceeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCC-CceEEEEEecCCCccc
Confidence 999999999999999999999999999999999999999999999999999886678888766 8999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeeEEEecCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCcchHHHHHHHHHHHhhc---C
Q 011827 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGET---A 446 (476)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lw~~R~~~~~~~~~~g~~~~~D~~VP~~~l~~~~~~~~~~~~~~---g 446 (476)
++++++++++...+.+.+.++++++|+.+...+|+|||.+++++.+.|.+|++|+++|+.+++++++.+++++... |
T Consensus 342 D~eKl~afl~d~lek~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~l~~ 421 (511)
T KOG1232|consen 342 DEEKLTAFLEDCLEKGLISDGVLAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEAALVG 421 (511)
T ss_pred cHHHHHHHHHHhhhhcccccceecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred CEEEEeecCCCcEEEEeccCCCchhhhhc
Q 011827 447 KVIGYGHLGDGNLHLNISAPRYDDMVISV 475 (476)
Q Consensus 447 ~~~~~GH~gdGnlH~~i~~~~~~~~~~~~ 475 (476)
++++|||+||||+|+||....++++++|.
T Consensus 422 d~~gyGHlGDgNlHLNia~~efn~~iek~ 450 (511)
T KOG1232|consen 422 DIVGYGHLGDGNLHLNIAVREFNKEIEKL 450 (511)
T ss_pred cccccccccCCceeEeeeHHHHhHHHHHh
Confidence 89999999999999999999999999874
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=3.4e-62 Score=523.76 Aligned_cols=384 Identities=26% Similarity=0.381 Sum_probs=330.0
Q ss_pred ccCCCHHHHHHHHhhhCCCcEEeChhHHHhhcccccccc--CCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCC
Q 011827 75 FSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKY--RGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (476)
Q Consensus 75 ~~~~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~--~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~ 152 (476)
+..+.+.++++|++++|++ +.+++..+..|.+||...+ ...|.+|++|+|++||+++|++|+++++||+++||||++
T Consensus 91 ~~~~~~~~~~~L~~~l~~~-v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~ 169 (555)
T PLN02805 91 HKLVPQELIDELKAILQDN-MTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSI 169 (555)
T ss_pred cccchHHHHHHHHHhcCCc-eecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence 3455567889999999855 9999999999999874333 257999999999999999999999999999999999999
Q ss_pred CCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccc
Q 011827 153 VGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVR 232 (476)
Q Consensus 153 ~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~ 232 (476)
.|++.+..+|++|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++|++ .+||||++++|++|.++.+
T Consensus 170 ~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~--~~TIGG~ia~n~~G~~s~~ 247 (555)
T PLN02805 170 EGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVR 247 (555)
T ss_pred CCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCcc--ccChhhHhhCCCcccccCc
Confidence 99988767899999999999999999999999999999999999999999999999874 5899999999999999999
Q ss_pred cccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHH
Q 011827 233 YGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 312 (476)
Q Consensus 233 yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~ 312 (476)
||.++|+|++++||++||++++++....|++.||||+++++||+|+|||||+++||++|.|+.....++.|++++++.++
T Consensus 248 yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~a 327 (555)
T PLN02805 248 YGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADV 327 (555)
T ss_pred cccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHH
Confidence 99999999999999999999998777778889999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHcCCceeEEEEeCHHHHHHHHHHhcCCCCCCCCCCcceEEEEeecCCchhhHHHHHHHHHHHHhcCCCeeeEEE
Q 011827 313 LREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVI 392 (476)
Q Consensus 313 ~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (476)
+..++. .+..|+++|+||...++.+..+. . ..++ ..+++++|++|++++ ..++++.+.+.+.+.+. .+..+
T Consensus 328 v~~i~~-~g~~psa~ElmD~~~~~~~~~~~-~--~~~p---~~~~Ll~e~~g~~~~-~~~~~~~~~~i~~~~g~-~~~~~ 398 (555)
T PLN02805 328 AIATML-SGIQVSRVELLDEVQIRAINMAN-G--KNLP---EAPTLMFEFIGTEAY-AREQTLIVQKIASKHNG-SDFVF 398 (555)
T ss_pred HHHHHh-CCCCcEEEEEECHHHHHHHHHhc-C--CCCC---cceEEEEEEecCcHH-HHHHHHHHHHHHHhCCC-ceEEE
Confidence 988754 46779999999998888765542 2 1222 246899999997653 33334444444444443 46678
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEEcCcchHHHHHHHHHHHhhcC-CEEEEeecCCCcEEEEeccCCC
Q 011827 393 AQDINQASSFWRIREGIAEALMKAGA---VYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNISAPRY 468 (476)
Q Consensus 393 ~~d~~~~~~lw~~R~~~~~~~~~~g~---~~~~D~~VP~~~l~~~~~~~~~~~~~~g-~~~~~GH~gdGnlH~~i~~~~~ 468 (476)
+.++++.+++|+.|+.+.......++ .+.+|++||+++|+++++.+++.+++++ .+..|||+||||+|++++++..
T Consensus 399 a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdGnlH~~i~~~~~ 478 (555)
T PLN02805 399 AEEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTIILFDPS 478 (555)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCcEEEEeccCCC
Confidence 88999999999999988776654332 3689999999999999999999999998 7888999999999999987654
Q ss_pred ch
Q 011827 469 DD 470 (476)
Q Consensus 469 ~~ 470 (476)
++
T Consensus 479 ~~ 480 (555)
T PLN02805 479 QE 480 (555)
T ss_pred CH
Confidence 43
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.2e-60 Score=508.84 Aligned_cols=382 Identities=25% Similarity=0.392 Sum_probs=333.0
Q ss_pred HHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccC
Q 011827 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (476)
Q Consensus 80 ~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~ 159 (476)
.+++++|++++|.++|+++++.+..|++|+...+...|.+|++|+|++||+++|++|+++++||++||+||++.|++.|.
T Consensus 19 ~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~ 98 (499)
T PRK11230 19 TSLLMALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL 98 (499)
T ss_pred HHHHHHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC
Confidence 46788999999999999999999999999866778899999999999999999999999999999999999999999887
Q ss_pred CCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCcccccccccc
Q 011827 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGN 239 (476)
Q Consensus 160 ~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~ 239 (476)
.+|++|||++||+|+++|+++.+++||||+++.+|+++|.++|+.++++|++...|||||++++|+||.++.+||.++|+
T Consensus 99 ~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~ 178 (499)
T PRK11230 99 EKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHN 178 (499)
T ss_pred CCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhh
Confidence 78999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHHH
Q 011827 240 VLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRK 319 (476)
Q Consensus 240 V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (476)
|++++||++||++++++... +++.||||+++++||+|+|||||+++||++|+|+....+.+.|++++++.+++.+++.
T Consensus 179 v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~- 256 (499)
T PRK11230 179 LLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA- 256 (499)
T ss_pred eeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh-
Confidence 99999999999999997653 3467999999999999999999999999999999988889999999999999988754
Q ss_pred cCCceeEEEEeCHHHHHHHHHHhcCCCCCCCCCCcceEEEEeecCCchhhHHHHHHHHHHHHhcCCCeeeEEEecCHHHH
Q 011827 320 LGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQA 399 (476)
Q Consensus 320 ~~~~~~a~E~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~ 399 (476)
.+..|.++|+||...++.+.++. ....|.+ ...++++|+.|..++ ...+++.+.+.+.+.+. .+..++.++++.
T Consensus 257 ~~~~p~~~el~d~~~~~~~~~~~-~~~~p~~---~~~~ll~e~~g~~~~-v~~~~~~l~~~~~~~g~-~~~~~a~~~~~~ 330 (499)
T PRK11230 257 AGIIPGGLEMMDNLSIRAAEDFI-HAGYPVD---AEAILLCELDGVESD-VQEDCERVNDILLKAGA-TDVRLAQDEAER 330 (499)
T ss_pred cCCCcEEEEeeCHHHHHHHHHhc-CCCCCCC---cceEEEEEecCCchH-HHHHHHHHHHHHHhcCC-ceEEEeCCHHHH
Confidence 46678999999998877766653 2223322 356889999988654 44455666555554442 345677888888
Q ss_pred HHHHHHHHHHHHHHHhcC-CceEEEEEEcCcchHHHHHHHHHHHhhcC-CEEEEeecCCCcEEEEeccCCCc
Q 011827 400 SSFWRIREGIAEALMKAG-AVYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNISAPRYD 469 (476)
Q Consensus 400 ~~lw~~R~~~~~~~~~~g-~~~~~D~~VP~~~l~~~~~~~~~~~~~~g-~~~~~GH~gdGnlH~~i~~~~~~ 469 (476)
+.+|+.|+...+.+...+ ..+.+|++||+++++++++.+++..++++ .+..|||+||||+|++++.+..+
T Consensus 331 ~~~W~~R~~~~~~~~~~~~~~~~~dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~gH~GdGn~H~~i~~~~~~ 402 (499)
T PRK11230 331 VRFWAGRKNAFPAVGRISPDYYCMDGTIPRRELPGVLEGIARLSQQYGLRVANVFHAGDGNMHPLILFDANE 402 (499)
T ss_pred HHHHHHHHhhHHHHHhhCCCeeEEeecCChHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCcceeeecCCCCC
Confidence 899999987776666543 34578999999999999999999999998 78889999999999999876544
No 4
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=8.4e-56 Score=463.25 Aligned_cols=343 Identities=31% Similarity=0.484 Sum_probs=297.6
Q ss_pred EEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHH
Q 011827 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLD 199 (476)
Q Consensus 120 vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~ 199 (476)
|++|+|++||+++|++|+++++||+++|+||++.|++.|.+++++|||++||+|+++|+++.+++||||+++.+|+++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 57899999999999999999999999999999999988877899999999999999999999999999999999999999
Q ss_pred hCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCc
Q 011827 200 DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSL 279 (476)
Q Consensus 200 ~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~l 279 (476)
++|+.+|++|++...+||||++++|++|.++.+||.++|+|++++||++||++++++....|++.||||+++++||+|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 99999999999988899999999999999999999999999999999999999999887788999999999999999999
Q ss_pred eEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHHHcCCceeEEEEeCHHHHHHHHHHhcCCCCCCCCCCcceEEE
Q 011827 280 GIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVL 359 (476)
Q Consensus 280 GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~p~~~~~~~~~ll 359 (476)
||||+++||++|.|+......+.|++++++.+++..++. .+..|+++|++|...++.+..+. ... ++.. ...+++
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~p~a~el~d~~~~~~~~~~~-~~~--~p~~-~~~~l~ 235 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA-AGIIPAGMEFLDNLSIKAVEDIS-GIG--LPKD-AGAILL 235 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh-cCCCcEEEEccCHHHHHHHHHhc-CCC--CCCC-CceEEE
Confidence 999999999999999988888899999999999988754 46678999999998877765542 222 2222 456788
Q ss_pred EeecCCchhhHHHHHHHHHHHHhcCCCeeeEEEecCHHHHHHHHHHHHHHHHHHHhcC-CceEEEEEEcCcchHHHHHHH
Q 011827 360 IETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMKAG-AVYKYDLSLPVEKMYDLVEKM 438 (476)
Q Consensus 360 ie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lw~~R~~~~~~~~~~g-~~~~~D~~VP~~~l~~~~~~~ 438 (476)
+|+.|..++ ..++++.+.+.+.+.+. .+...+.++++..++|+.|+...+.+.... ..+.+|++||+++++++++.+
T Consensus 236 v~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~ 313 (413)
T TIGR00387 236 VEIDGVHEA-VERDEEKIEQICRKNGA-VDVQIAQDEEERALLWAGRRNAFKAASKLSPLYLIEDGTVPRSKLPEALRGI 313 (413)
T ss_pred EEecCCcHH-HHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHHHHHhHHHHHhhCCCcceeEEecCHHHHHHHHHHH
Confidence 999988754 34445555555544442 345667888889999999998777665433 246789999999999999999
Q ss_pred HHHHhhcC-CEEEEeecCCCcEEEEeccCCCc
Q 011827 439 RQRLGETA-KVIGYGHLGDGNLHLNISAPRYD 469 (476)
Q Consensus 439 ~~~~~~~g-~~~~~GH~gdGnlH~~i~~~~~~ 469 (476)
++.+++++ ....|||+|+||+|++++++..+
T Consensus 314 ~~~~~~~~~~~~~~gH~g~g~lh~~~~~~~~~ 345 (413)
T TIGR00387 314 ADIARKYDFTIANFGHAGDGNLHPTILTDPED 345 (413)
T ss_pred HHHHHHcCCeEEEEEEecCCccccccCCCCCC
Confidence 99999998 77789999999999998876544
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.9e-52 Score=443.07 Aligned_cols=377 Identities=37% Similarity=0.599 Sum_probs=323.8
Q ss_pred HHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEE
Q 011827 86 FKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVII 165 (476)
Q Consensus 86 L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvI 165 (476)
+.++++...+.+++.....|..||+ .+...|.+|+.|+|++||++++++|+++++||+|||+||++.|++.|. ++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gvvl 79 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVVL 79 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcEEE
Confidence 5677888778999999999999997 778889999999999999999999999999999999999999999987 79999
Q ss_pred EcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEE
Q 011827 166 NMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEA 245 (476)
Q Consensus 166 dl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~ev 245 (476)
||++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++.+.|||||+|++|+||.++.+||.++|+|+++++
T Consensus 80 ~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 80 DLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred EchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 99999999889999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHH---HHcCC
Q 011827 246 VLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK---RKLGE 322 (476)
Q Consensus 246 V~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 322 (476)
|++||++++++.+..|+++||||++++.||+|+|||||+++||+.|.|+...+.+..+++.+.+........ ...+.
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999888888898887765443332 22234
Q ss_pred ceeEEEEeCHHHHHHHHHHhcCCCCCCCCCCcceEEEEeecCCchhhHHHHHHHHHHHHhcCCCeeeEEEecCHHHHHHH
Q 011827 323 ILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSF 402 (476)
Q Consensus 323 ~~~a~E~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~l 402 (476)
.+.++|++|.. +.....+......|.. ...++++|+.+.......+....+.+.+.+.+...+..+..+.++...+
T Consensus 240 ~~~~~e~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
T COG0277 240 IPAALEFMDRP-IKAAEAYLGGGALPLE---APARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARL 315 (459)
T ss_pred Cceeeeecchh-HHHHHHhccccCCCCC---CceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHH
Confidence 67899999987 4444333222222322 2267888988877344455556666655555534566788888889999
Q ss_pred HHHHHHHHHHHHhcCC-ceEEEEEEcCcchHHHHHHHHHHHhhcC---CEEEEeecCCCcEEEEeccCCC
Q 011827 403 WRIREGIAEALMKAGA-VYKYDLSLPVEKMYDLVEKMRQRLGETA---KVIGYGHLGDGNLHLNISAPRY 468 (476)
Q Consensus 403 w~~R~~~~~~~~~~g~-~~~~D~~VP~~~l~~~~~~~~~~~~~~g---~~~~~GH~gdGnlH~~i~~~~~ 468 (476)
|..|+.........+. .+..|+++|.+.+++++..+.+.+.+++ .+..++|.||||+|+++..+..
T Consensus 316 ~~~r~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~ 385 (459)
T COG0277 316 WLARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHAGDGNLHLNILYDVG 385 (459)
T ss_pred HHHHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHHHhcCCCceeeeecccCCCcceeeeccCCC
Confidence 9999988887776654 5678999999999999999999999985 7888999999999999987765
No 6
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-44 Score=375.94 Aligned_cols=259 Identities=20% Similarity=0.292 Sum_probs=237.1
Q ss_pred HHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccC
Q 011827 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (476)
Q Consensus 80 ~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~ 159 (476)
++++++|++++|+++|++++..+..|++||. .+.+.|.+||+|.|++||+++|++|+++++||++|||||+++|+++|.
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r-~~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~ 81 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFR-SGQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPN 81 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCcc-ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccC
Confidence 5678999999999999999999999999985 467889999999999999999999999999999999999999999996
Q ss_pred CC-----eEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCC-CCccccccccCCCCCCCcccc
Q 011827 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (476)
Q Consensus 160 ~~-----gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~-~~~tvGG~va~nagG~~~~~y 233 (476)
.+ +|+|||++||+|+++| ++.+++|+||+++.+|+++|+++|+.+++++|+. ..|||||+|++|+||....+|
T Consensus 82 ~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRg 160 (564)
T PRK11183 82 GNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRG 160 (564)
T ss_pred CCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEc
Confidence 53 7999999999999999 5678999999999999999999999988888654 356899999999999999999
Q ss_pred ccccccEeEEEEEeCCCcE-------EEecCCcc--c---CCCCC----------------------------------c
Q 011827 234 GSLHGNVLGLEAVLANGDV-------IDMLGTLR--K---DNTGY----------------------------------D 267 (476)
Q Consensus 234 G~~~d~V~~~evV~~dG~i-------v~~~~~~~--k---~~~g~----------------------------------d 267 (476)
|.+.++++. ++|+++|++ ++.+.+.. + ++.|| |
T Consensus 161 ga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaD 239 (564)
T PRK11183 161 PAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNAD 239 (564)
T ss_pred chhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCC
Confidence 999999999 999999999 66555431 2 56788 9
Q ss_pred chhhh--hcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHHHcCCceeEEEEeCHHHHHHHHHHh
Q 011827 268 LKHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYL 342 (476)
Q Consensus 268 L~~~~--~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~ 342 (476)
+.++| .||+|+|||| +++|+++|+|+...++++.+++.+++.++...+....+..|.++||||+.+++++.+|.
T Consensus 240 l~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~yg 315 (564)
T PRK11183 240 PRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYG 315 (564)
T ss_pred HHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhC
Confidence 99999 9999999999 99999999999999999999999999999999888778899999999999999998875
No 7
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.1e-40 Score=334.91 Aligned_cols=374 Identities=19% Similarity=0.249 Sum_probs=268.5
Q ss_pred HHHhhhCC---CcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhC--CCeEEEeCCCCCCCCCcccC
Q 011827 85 YFKELLGE---KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPV 159 (476)
Q Consensus 85 ~L~~ilg~---~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~--~~~v~~~GgGt~~~g~~~~~ 159 (476)
.+++++|. ..+..++...+..++|+..++.-.|.+|++|+|++||++++|.|+.. .+||.+||+||++.|++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~ 108 (505)
T KOG1231|consen 29 SLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT 108 (505)
T ss_pred chhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC
Confidence 45666663 23444565677778888888888999999999999999999999999 89999999999999999887
Q ss_pred CCeEEEEcC---CCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCC--CcccCCCCCCCccccccccCCCCCCCccccc
Q 011827 160 FDEVIINMG---SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF--IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYG 234 (476)
Q Consensus 160 ~~gvvIdl~---~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl--~l~~~~g~~~~~tvGG~va~nagG~~~~~yG 234 (476)
.+|++|.|. .|+++-.+..++.+|.|+||..|-+|++++.++|+ .++.||+. .||||++++.+.|...+|||
T Consensus 109 ~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~---ltVGGtlsnagiggqafRyG 185 (505)
T KOG1231|consen 109 RGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP---LTVGGTLSNAGIGGQAFRYG 185 (505)
T ss_pred CCCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccc---eeecceeccCccccceeecc
Confidence 888665544 46776567777899999999999999999999999 67878775 78999999999999999999
Q ss_pred cccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCC---CceeEEEe-ecCCHHHHH
Q 011827 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL---SSVNLAFL-ACKDYFSCQ 310 (476)
Q Consensus 235 ~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p---~~~~~~~~-~~~~~~~~~ 310 (476)
+..+||++++||+++|++++|+++ .|++||.++.||+|+|||||+++++++|+| +....... .|+..+.+.
T Consensus 186 pqi~NV~~LdVVtgkGeiv~cs~r-----~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~ 260 (505)
T KOG1231|consen 186 PQISNVIELDVVTGKGEIVTCSKR-----ANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAA 260 (505)
T ss_pred chhhceEEEEEEcCCCcEEecccc-----cCceeeeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhh
Confidence 999999999999999999999876 789999999999999999999999999999 33333333 456565544
Q ss_pred HHHHHHHHHcCCceeEEEEeCHHHHHHHHHHhcCCCC------CCCCCCcceEEEEeecCCchhhHHHHHHHHHHHHhcC
Q 011827 311 KLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRN------PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEG 384 (476)
Q Consensus 311 ~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~------p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~ 384 (476)
........ .+-..+.+|..|..-+..+..+. ..-. -.... ..-.+..|+.+..+...... ..+.+.....
T Consensus 261 ~~~~~gl~-~n~r~s~f~l~D~~~i~~~~~~~-~~~yclev~ky~d~~-e~pti~~e~~~l~~~l~~~~-~~~~~~~v~y 336 (505)
T KOG1231|consen 261 IVARNGLQ-SNIRVSRFELLDEVQIAAINSDH-STNYCLEVAKYYDLT-EAPTLFQEIGGLSEKLNYAP-TFIVEQDVQY 336 (505)
T ss_pred hhhhcccc-ccceeeccccCcHHHHHHHHhcC-CeeeeeehhhccCcc-cCchHHHHHhccchhhhccc-hhhhhhhhHH
Confidence 33322111 12335669999977555554331 1110 00000 11123445555332211110 0111111010
Q ss_pred CCeee-EEEecCHHHHHHHHHHHHHHHHHHHhcC------CceEEEEEEcCcchHHHHHHHHHHHhhcC-CEEEEeecCC
Q 011827 385 GLISD-GVIAQDINQASSFWRIREGIAEALMKAG------AVYKYDLSLPVEKMYDLVEKMRQRLGETA-KVIGYGHLGD 456 (476)
Q Consensus 385 ~~~~~-~~~~~d~~~~~~lw~~R~~~~~~~~~~g------~~~~~D~~VP~~~l~~~~~~~~~~~~~~g-~~~~~GH~gd 456 (476)
..+.+ ..++.++.....+|+.||-+.......+ ..+..|+++|.++.+.++-.+++.++-.. -....+|+|+
T Consensus 337 ~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl~~~s~g~~liyptnk~~kw~~~~sav~ph~~e 416 (505)
T KOG1231|consen 337 HDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDILVPNSSGPVLIYPTNKDLKWSNRLSAVTPHAGE 416 (505)
T ss_pred HHhhhHhhhcccchhhcccccCCCchheeecccccchhhhhhhccceeeccCCCceEEeccccCcchhhhhccccccCCC
Confidence 01122 3456677777889999998665443332 12456999999999999988887765554 3455799999
Q ss_pred CcEEEEeccCCCch
Q 011827 457 GNLHLNISAPRYDD 470 (476)
Q Consensus 457 GnlH~~i~~~~~~~ 470 (476)
||+|+.++....++
T Consensus 417 ~vFy~v~~l~s~~~ 430 (505)
T KOG1231|consen 417 GVFYLVILLRSSGK 430 (505)
T ss_pred ceEEEEEEecCCCc
Confidence 99999888775443
No 8
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=7e-38 Score=331.97 Aligned_cols=339 Identities=16% Similarity=0.189 Sum_probs=252.9
Q ss_pred CcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhh--hCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCC
Q 011827 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCN--SRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSM 170 (476)
Q Consensus 93 ~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~--~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~l 170 (476)
..+.+|+..+..|++||+..+...|.+|++|+|++||+++|++|+ +++++|.+||+||++.|++.+ .+|++|||++|
T Consensus 41 ~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivIdms~L 119 (525)
T PLN02441 41 GHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVDMRSL 119 (525)
T ss_pred ceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEECCCC
Confidence 458899999999999999888999999999999999999999997 679999999999999988875 57999999999
Q ss_pred CC------eEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEE
Q 011827 171 NN------IITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244 (476)
Q Consensus 171 n~------I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~e 244 (476)
|+ ++++|.+..+|+|+||++|.++.+++.++|+.. .+++....+||||++++++.|..+++||..+|+|+++|
T Consensus 120 n~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP-~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~le 198 (525)
T PLN02441 120 RGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAP-RSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELD 198 (525)
T ss_pred CCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCcc-CCccccCceEEeEEcCCCCccccccccCcHHHhEEEEE
Confidence 99 678999999999999999999999999999864 46666678899999999888888999999999999999
Q ss_pred EEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHHHcCCce
Q 011827 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEIL 324 (476)
Q Consensus 245 vV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (476)
||++||+++++++. .++|||++++|++|+|||||+++||++|.|+....+.+.+++++++.+.+..+... ..+
T Consensus 199 VVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~--~~~ 271 (525)
T PLN02441 199 VVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISR--PPE 271 (525)
T ss_pred EEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhc--CCC
Confidence 99999999999864 56799999999999999999999999999998878888899999999988887541 222
Q ss_pred eEEEEeCHHHHHH----HHH----HhcCCC----CCCCCCCcceEEE----EeecCCchhhHHHHHHHHHHHHhcCCCee
Q 011827 325 SAFEFLDNQSMDL----VLT----YLEGVR----NPFSSSMHNFYVL----IETTGSEESYDREKLEAFLLSSMEGGLIS 388 (476)
Q Consensus 325 ~a~E~~d~~~~~~----~~~----~~~~~~----~p~~~~~~~~~ll----ie~~g~~~~~~~~~l~~~~~~~~~~~~~~ 388 (476)
.++|+++...+-- +.. .+.... ..+... .+..-. .+++..++...++..+++++.+.-. .
T Consensus 272 ~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~---~ 347 (525)
T PLN02441 272 NSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSD-GGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFI---P 347 (525)
T ss_pred CCcceEeEEEEeCCCCceeeeecccCCccccchhhccccC-CceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCC---C
Confidence 3455555321100 000 000000 001111 122222 3334444434445566666655311 1
Q ss_pred eEEEecCHHHHHHHHHHHHHHHHHHHhcC----CceEEEEEEcCcchHHHHHHHHHHHhhc
Q 011827 389 DGVIAQDINQASSFWRIREGIAEALMKAG----AVYKYDLSLPVEKMYDLVEKMRQRLGET 445 (476)
Q Consensus 389 ~~~~~~d~~~~~~lw~~R~~~~~~~~~~g----~~~~~D~~VP~~~l~~~~~~~~~~~~~~ 445 (476)
...+..|..-.+-+-+.+. ....++..| +..+.++=||-+++.++.+.+-+.+-..
T Consensus 348 ~~~~~~d~~y~~fl~rv~~-~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~~ 407 (525)
T PLN02441 348 GLLFTTDVSYVDFLDRVHV-EELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILLD 407 (525)
T ss_pred CCceecccCHHHHHHhhhh-HHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhcccc
Confidence 1233444433333333332 233444444 2346799999999999988887766554
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=6.4e-37 Score=311.75 Aligned_cols=190 Identities=22% Similarity=0.341 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCC
Q 011827 125 TTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI 204 (476)
Q Consensus 125 s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~ 204 (476)
..+||+++|++|+++++||+++|+||+...+. +. ++++|||++||+|+++|+++.+|+|+||+++.+|+++|.++|+.
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~ 80 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQM 80 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 47999999999999999999999998544443 32 56799999999999999999999999999999999999999999
Q ss_pred cccCCCCCC-CccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEE
Q 011827 205 MPLDLGAKG-SCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVT 283 (476)
Q Consensus 205 l~~~~g~~~-~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt 283 (476)
+|++|+..+ .+||||++++|++|+++.+||.++|+|+++++|++||++++++.+..|+++||||+++++||+|+|||||
T Consensus 81 lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVit 160 (352)
T PRK11282 81 LPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVLL 160 (352)
T ss_pred eCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhhe
Confidence 998876555 5899999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred EEEEEccCCCCceeEEEeecCCHHHHHHHHHHHH
Q 011827 284 KVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (476)
Q Consensus 284 ~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (476)
+++||++|.|+...++.+.++ .+++.+++.++.
T Consensus 161 evtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 161 EVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred EEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 999999999998777666654 456666666554
No 10
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.8e-33 Score=298.29 Aligned_cols=201 Identities=18% Similarity=0.312 Sum_probs=181.8
Q ss_pred cccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 011827 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (476)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~ 186 (476)
++|++.+...|..+++|+|++||+++|+.|++++.+|+++|+|||+++.+.+ ++.+|||++||+|+++|+++++|+||
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 4898888999999999999999999999999999999999999999887764 45689999999999999999999999
Q ss_pred cCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCC
Q 011827 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (476)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~ 266 (476)
||+++.+|.+.|.++|+.++ ++|+...+||||++++|++|.+ .+||.++|+|+++++|+++|+++.+++. .++
T Consensus 130 AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~p 202 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDP 202 (541)
T ss_pred CCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCC-----CCH
Confidence 99999999999999999997 5677788999999999999985 5899999999999999999999998764 457
Q ss_pred cchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHH
Q 011827 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (476)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (476)
|||++.+||+|+|||||++|||+.|.+......+. .+++++.+.+.++..
T Consensus 203 dLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~--~~~~e~l~~~~~~~~ 252 (541)
T TIGR01676 203 ELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI--SNMKDIKKNHKKFLA 252 (541)
T ss_pred HHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe--cCHHHHHHHHHHHHh
Confidence 99999999999999999999999999987654443 678888888877644
No 11
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=2.2e-32 Score=287.38 Aligned_cols=200 Identities=25% Similarity=0.386 Sum_probs=180.0
Q ss_pred cccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 011827 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (476)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~ 186 (476)
++|+..+...|.+|+.|+|++||+++|++|++++++|+++|+||++++... .+|++|||++||+|+++|+++.+|+|+
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 478877888999999999999999999999999999999999999977554 578999999999999999999999999
Q ss_pred cCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCC
Q 011827 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (476)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~ 266 (476)
||+++.+|.++|.++|+.++. +|+.+.+||||+++++++|. +.+||.++|+|+++++|++||++++++++ .++
T Consensus 83 aG~~l~~L~~~L~~~Gl~l~~-~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~-----~~~ 155 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYSMSN-LGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEE-----RNA 155 (438)
T ss_pred CCCCHHHHHHHHHHcCCEecC-CCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCC-----CCh
Confidence 999999999999999999885 56667789999999999996 68999999999999999999999999865 457
Q ss_pred cchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHH
Q 011827 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (476)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (476)
|||++.+|++|+|||||++|||+.|.+...... ...+++++.+.+.+..
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~~--~~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQETS--FVSTLKELLDNWDSHW 204 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEEE--ecCCHHHHHHHHHHHh
Confidence 999999999999999999999999988766543 4578888888876653
No 12
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=4.5e-32 Score=284.32 Aligned_cols=198 Identities=20% Similarity=0.326 Sum_probs=173.6
Q ss_pred cccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 011827 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (476)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~ 186 (476)
++|+..+...|.+|++|+|++||+++|+.|++ ||+++|+||++.+.+. .+|++|||++||+|+++|+++++|+||
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEc
Confidence 46877778899999999999999999999974 7999999999976543 578999999999999999999999999
Q ss_pred cCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCC
Q 011827 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (476)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~ 266 (476)
||+++.+|.++|.++|+.+|..++. +.+||||+++++++|. +.+||.++|+|+++++|++||+++++++. .++
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~~~~~-~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~ 149 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLENQGDI-DPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQ 149 (419)
T ss_pred CCCCHHHHHHHHHHcCCccccCCCC-CCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCH
Confidence 9999999999999999999865554 4578999999999997 46899999999999999999999999865 568
Q ss_pred cchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHH
Q 011827 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (476)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (476)
|||++++||+|+|||||++|||++|.+....... ..+++++.+.+.++..
T Consensus 150 dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 150 DMYLAARVSLGALGVISQVTLQTVALFRLRRRDW--RRPLAQTLERLDEFVD 199 (419)
T ss_pred HHHHHHHhCCCceEEEEEEEEEeecceEeEEEEE--ecCHHHHHHHHHHHHh
Confidence 9999999999999999999999999986654433 3567777777776544
No 13
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.98 E-value=2.3e-31 Score=285.50 Aligned_cols=206 Identities=16% Similarity=0.176 Sum_probs=178.0
Q ss_pred hhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeC-CCCCCCCCcccC--CCeEEEEcCCCCCeEEEeCCC
Q 011827 104 AANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG-GNTGLVGGSVPV--FDEVIINMGSMNNIITFDKGS 180 (476)
Q Consensus 104 ~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~G-gGt~~~g~~~~~--~~gvvIdl~~ln~I~~id~~~ 180 (476)
.+-++|+..+...|.+|++|+|++||+++|++|+++++||.++| +||++.+.+.+. ++|++|||++||+|+++|.++
T Consensus 19 ~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~ 98 (557)
T TIGR01677 19 NAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATA 98 (557)
T ss_pred cchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCC
Confidence 34578999999999999999999999999999999999999995 688887655442 246999999999988999999
Q ss_pred CEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCcc-ccccccccEeEEEEEeCCC------cEE
Q 011827 181 GVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLV-RYGSLHGNVLGLEAVLANG------DVI 253 (476)
Q Consensus 181 ~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~-~yG~~~d~V~~~evV~~dG------~iv 253 (476)
.+|+|+||+++.+|.++|.++|+.++..|.. ..+||||+++++++|++.. +||.++|+|+++++|++|| +++
T Consensus 99 ~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~-~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~ 177 (557)
T TIGR01677 99 MTVTVESGMSLRELIVEAEKAGLALPYAPYW-WGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVR 177 (557)
T ss_pred CEEEECCCCcHHHHHHHHHHcCCEeccCCCC-CCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEE
Confidence 9999999999999999999999999876654 4579999999999998764 7889999999999999999 788
Q ss_pred EecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHH
Q 011827 254 DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (476)
Q Consensus 254 ~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (476)
+++.. .++|||++++|++|+|||||++|||+.|.+.... .+.+...+.+.+.+.++.
T Consensus 178 ~~s~~-----~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~--~~~~~~~~~l~~~~~~~~ 234 (557)
T TIGR01677 178 ILSEG-----DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSV--TYTMRDDSDFEDQFVTFG 234 (557)
T ss_pred EeCCC-----CCHHHHHhhccCCCccEeeeEEEEEEEccccceE--EEEcCCHHHHHHHHHHhh
Confidence 87654 4579999999999999999999999999987333 345677887777676654
No 14
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=256.37 Aligned_cols=262 Identities=21% Similarity=0.322 Sum_probs=216.0
Q ss_pred ccccccCccccCCCHHHHHHHHhhhCCCcEEeChhHHHhh-----------ccccccccCCCccEEEecCCHHHHHHHHH
Q 011827 66 ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAA-----------NEDWMRKYRGSSKLLLQPRTTNEVSQILK 134 (476)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~L~~ilg~~~v~~~~~~l~~y-----------~~d~~~~~~~~p~~vv~P~s~~eV~~iv~ 134 (476)
++++.+|..-.-.+.+++..|++ .++..+.+...+. ..-|-.++...|+.|+.|++.+||.++|+
T Consensus 103 ~s~~p~d~P~~VeNedflh~Lke----t~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~ 178 (613)
T KOG1233|consen 103 LSDVPIDAPRPVENEDFLHFLKE----TKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVE 178 (613)
T ss_pred cccCcccCCCCccchHHHHHHHh----ccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHH
Confidence 55555553333345567777763 2233322221111 11244677888999999999999999999
Q ss_pred HhhhCCCeEEEeCCCCCCCCCcccCCC----eEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCC
Q 011827 135 YCNSRLLAVVPQGGNTGLVGGSVPVFD----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLG 210 (476)
Q Consensus 135 ~a~~~~~~v~~~GgGt~~~g~~~~~~~----gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g 210 (476)
.|.+|++.++|.||||+.+++.....+ -+.+|++.||+|+.+|.++.++++|+|++-++|.+.|.+.|++..+.|.
T Consensus 179 lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPD 258 (613)
T KOG1233|consen 179 LAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPD 258 (613)
T ss_pred HHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCC
Confidence 999999999999999999877543232 2568899999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEcc
Q 011827 211 AKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTP 290 (476)
Q Consensus 211 ~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~ 290 (476)
+...+|+|||+++.+.|+.-.+||.+.|.|+.+.+|+|.|.+-+- -..++-++|||+.+.+.||+|||||||++++|++
T Consensus 259 S~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~-Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKir 337 (613)
T KOG1233|consen 259 SIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQ-CQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIR 337 (613)
T ss_pred ceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhh-hcCCcccCCCCcceEEeccCcceeEEEEEEEEEe
Confidence 999999999999999999999999999999999999999976653 3345667999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCHHHHHHHHHHHHHHcCCceeEEEEeCHH
Q 011827 291 PKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQ 333 (476)
Q Consensus 291 p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~ 333 (476)
|.|+......+.|+++++-...++++..+ .-.|.++.+||..
T Consensus 338 PiPe~~ryGS~aFPNFEqGV~f~REvA~q-RCqPAS~RLMDN~ 379 (613)
T KOG1233|consen 338 PIPEVKRYGSFAFPNFEQGVNFFREVAIQ-RCQPASLRLMDND 379 (613)
T ss_pred echhhhhcCccccCcHHHHHHHHHHHHHH-hcCchheeeeccc
Confidence 99998888888999999999999886543 2357889999965
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=2.8e-29 Score=268.21 Aligned_cols=201 Identities=20% Similarity=0.305 Sum_probs=176.2
Q ss_pred cccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 011827 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (476)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~ 186 (476)
++|+......|.+++.|+|++||+++|+.|++++++|.++|+||+..+... .++.+|||++||+|+++|++.++|+|+
T Consensus 87 ~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~--td~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 87 SNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAF--SREGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred cccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeee--CCCEEEECcCCCCcEEEeCCCCEEEEc
Confidence 488888899999999999999999999999999999999999999877655 355679999999999999999999999
Q ss_pred cCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCC
Q 011827 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (476)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~ 266 (476)
||+++.+|.+.|.++|+.++. .++....||||+++++++|.+ .++|.++|+|+++++|+++|++++++.+ ..+
T Consensus 165 AG~~l~~L~~~L~~~GLal~n-~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~p 237 (573)
T PLN02465 165 AGARVQQVVEALRPHGLTLQN-YASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKE-----DDP 237 (573)
T ss_pred cCCCHHHHHHHHHHcCCEecc-CCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCC-----CCH
Confidence 999999999999999999885 444567799999999999974 4799999999999999999999998764 447
Q ss_pred cchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHH
Q 011827 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (476)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (476)
|||++.+++.|+|||||+++|++.|.+......+ ..+++++.+.+.++..
T Consensus 238 dLF~aar~glG~lGVIteVTLql~P~~~L~~~~~--~~~~~~~~~~~~~~~~ 287 (573)
T PLN02465 238 ELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTF--VSNRKEIKKNHKKWLS 287 (573)
T ss_pred HHHhHhhccCCCCcEEEEEEEEEEecCceEEEEE--EecHHHHHHHHHHHHH
Confidence 9999999999999999999999999997654333 2467777777777643
No 16
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.96 E-value=1.4e-28 Score=219.60 Aligned_cols=139 Identities=29% Similarity=0.524 Sum_probs=130.8
Q ss_pred ccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHH
Q 011827 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (476)
Q Consensus 117 p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~ 196 (476)
|.+|++|+|++||++++++|+++++|+.++|+||++.+.+. ..++++|||++||+|+++|+++++++|+||++|.+|++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999996654 46899999999999889999999999999999999999
Q ss_pred HHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEec
Q 011827 197 FLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDML 256 (476)
Q Consensus 197 ~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~ 256 (476)
+|.++|+.+++++++...+|+||++++|++|..+.+||.++|+|+++++|++||++++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999988888888899999999999999999999999999999999999999864
No 17
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=1e-25 Score=226.24 Aligned_cols=173 Identities=21% Similarity=0.337 Sum_probs=149.0
Q ss_pred hhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCC-CCCeEEEe
Q 011827 99 EDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFD 177 (476)
Q Consensus 99 ~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~-ln~I~~id 177 (476)
..+++.|+ +.++++.|.+++.|+|++||++++++|+++++|++++|+|||+.....+ .+|++||+++ |++| ++
T Consensus 16 ~~~l~~~~---t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i-~~- 89 (298)
T PRK13905 16 NEPLARYT---SFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI-EV- 89 (298)
T ss_pred CCCccccc---eeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE-Ee-
Confidence 35677787 5788999999999999999999999999999999999999998654322 2489999998 9987 44
Q ss_pred CCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCccccc-cccccEeEEEEEeCCCcEEEe
Q 011827 178 KGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDM 255 (476)
Q Consensus 178 ~~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG-~~~d~V~~~evV~~dG~iv~~ 255 (476)
++.+++|+||++|.+|.++|.++|+. +++.++.++ ||||++++|+|+ || .++|+|.++++|++||+++++
T Consensus 90 -~~~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipG--TVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~~~~~ 161 (298)
T PRK13905 90 -EGNRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPG--TVGGAVFMNAGA-----YGGETADVLESVEVLDRDGEIKTL 161 (298)
T ss_pred -cCCEEEEECCCcHHHHHHHHHHcCCCcchhccCCCc--chhHHHHHcCCc-----CceEhheeEEEEEEEeCCCCEEEE
Confidence 45789999999999999999999994 555566665 599999999988 77 699999999999999999997
Q ss_pred cCCcccCCCCCcchhhhhcCCCC--ceEEEEEEEEccCCC
Q 011827 256 LGTLRKDNTGYDLKHLFIGSEGS--LGIVTKVSIHTPPKL 293 (476)
Q Consensus 256 ~~~~~k~~~g~dL~~~~~Gs~G~--lGIIt~~tl~l~p~p 293 (476)
+.+ |+++.++++... +||||+++||+.|..
T Consensus 162 ~~~--------e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 162 SNE--------ELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EHH--------HcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 643 889999988654 899999999999974
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=1.9e-24 Score=216.65 Aligned_cols=193 Identities=20% Similarity=0.303 Sum_probs=152.7
Q ss_pred CCHHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcc
Q 011827 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (476)
Q Consensus 78 ~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~ 157 (476)
.+.+.+++|++.++.. +. ...+++.|+ +.++++.|++++.|+|++||++++++|+++++|++++|+|||+.-...
T Consensus 2 ~~~~~~~~~~~~~~~~-~~-~~~~l~~~t---t~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~ 76 (302)
T PRK14652 2 VEATWRDEIARRVRGE-VL-RDAPLAPRT---AVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADA 76 (302)
T ss_pred chHHHHHHHHHhhccc-cc-cCCCccccc---EeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCC
Confidence 4567889999988766 44 446788888 678999999999999999999999999999999999999999853221
Q ss_pred cCCCeEEEEcCC-CCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc
Q 011827 158 PVFDEVIINMGS-MNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (476)
Q Consensus 158 ~~~~gvvIdl~~-ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~ 235 (476)
. .+|++|++++ ++.+ .. ++.+++|+||+.|.+|.+++.++|+. +.+..+.|+ ||||+++||+|.. ||.
T Consensus 77 g-~~gvVI~l~~~~~~i-~~--~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG--TvGGav~mNaGa~----gge 146 (302)
T PRK14652 77 G-VRGVVLRLPQDFPGE-ST--DGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG--TLGGAVAMNAGTK----LGE 146 (302)
T ss_pred C-EeeEEEEecCCcceE-Ee--cCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCc--chhHHHHHcCCCC----ceE
Confidence 1 1289999987 4444 33 35689999999999999999999997 555566665 5999999999853 788
Q ss_pred ccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCC
Q 011827 236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (476)
Q Consensus 236 ~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p 293 (476)
++|+|.++++|+++| +.+... +..+|++.+...++ -||||+++|++.|.+
T Consensus 147 i~d~v~~v~vv~~~G-~~~~~~----~e~~f~YR~s~~~~---~~II~~a~~~L~~~~ 196 (302)
T PRK14652 147 MKDVVTAVELATADG-AGFVPA----AALGYAYRTCRLPP---GAVITRVEVRLRPGD 196 (302)
T ss_pred hhheEEEEEEECCCC-cEEeeh----hhcCcccceeccCC---CeEEEEEEEEEecCC
Confidence 999999999999999 444432 33444554444432 389999999999854
No 19
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=3.7e-24 Score=215.06 Aligned_cols=192 Identities=19% Similarity=0.331 Sum_probs=157.7
Q ss_pred CCHHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcc
Q 011827 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (476)
Q Consensus 78 ~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~ 157 (476)
.+.+++++|+++++...+..+ .+++.|+ +.+.++.|.++++|+|++||++++++|+++++|+.++|+|||+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~v~~~-~~L~~~t---t~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~ 77 (307)
T PRK13906 2 INKDIYQALQQLIPNEKIKVD-EPLKRYT---YTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREG 77 (307)
T ss_pred chHHHHHHHHHhcCCCeeecC-Cccccce---EcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCC
Confidence 345678999999976567665 6788888 456789999999999999999999999999999999999999864322
Q ss_pred cCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCccccc-c
Q 011827 158 PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-S 235 (476)
Q Consensus 158 ~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG-~ 235 (476)
. .+|++|++++|++| +++. .+++|+||+.|.+|.+++.++|+. +.+..|.++ ||||++.||+|+ || .
T Consensus 78 g-~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG--tVGGav~mNaGa-----yGg~ 146 (307)
T PRK13906 78 G-IRGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG--SIGGAVYMNAGA-----YGGE 146 (307)
T ss_pred C-cceEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCc--cHhHHHHhhCCc-----chhh
Confidence 1 24899999899998 6663 589999999999999999999996 444456666 499999999988 75 7
Q ss_pred ccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCC--CCceEEEEEEEEccCC
Q 011827 236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE--GSLGIVTKVSIHTPPK 292 (476)
Q Consensus 236 ~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~--G~lGIIt~~tl~l~p~ 292 (476)
++|+|+++++|+++|++++.+++ |+.+.+|.|. ..--||++++|++.|.
T Consensus 147 i~D~l~~v~vv~~~G~~~~~~~~--------e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 147 VKDCIDYALCVNEQGSLIKLTTK--------ELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred hhhheeEEEEEeCCCCEEEEEHH--------HccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 99999999999999999998765 5555555552 1125899999999873
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=1.6e-24 Score=217.60 Aligned_cols=189 Identities=19% Similarity=0.329 Sum_probs=156.1
Q ss_pred HHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCC
Q 011827 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVF 160 (476)
Q Consensus 81 ~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~ 160 (476)
+++++|++++++..+..+ +++..|++ .++++.|+++++|+|++||++++++|+++++|++++|+|||+...... .
T Consensus 5 ~~~~~l~~~l~~~~~~~~-~~l~~~tt---~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g-~ 79 (305)
T PRK12436 5 EVYEYLSTVLPEGHVKQD-EMLKNHTH---IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGG-I 79 (305)
T ss_pred HHHHHHHHhcCcCceecC-CcchhccC---cccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCC-e
Confidence 456788888876556555 47888873 368999999999999999999999999999999999999999632211 1
Q ss_pred CeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccc
Q 011827 161 DEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHG 238 (476)
Q Consensus 161 ~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d 238 (476)
+|++|++++|++| +++ +.+++|+||+.|.+|.+++.++|+. +.+..|.+++ |||+++||+|+ ||. +.|
T Consensus 80 ~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGt--VGGav~~NAGa-----yG~~~~d 149 (305)
T PRK12436 80 RGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGS--VGGALYMNAGA-----YGGEISF 149 (305)
T ss_pred eEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccc--hhHHHHhcCcc-----chhehhe
Confidence 3899999989987 666 4689999999999999999999986 4444566655 99999999998 885 788
Q ss_pred cEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCC--CCceEEEEEEEEccCC
Q 011827 239 NVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSE--GSLGIVTKVSIHTPPK 292 (476)
Q Consensus 239 ~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~--G~lGIIt~~tl~l~p~ 292 (476)
.+.+++++++||++++.+++ |+.+.+|.|. ....||++++|++.|.
T Consensus 150 vl~~v~vv~~~G~v~~~~~~--------e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 150 VLTEAVVMTGDGELRTLTKE--------AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred eeeEEEEEeCCCCEEEEEHH--------HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 88899999999999998765 7778888772 3357999999999875
No 21
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.89 E-value=1e-22 Score=202.93 Aligned_cols=164 Identities=21% Similarity=0.286 Sum_probs=137.5
Q ss_pred ccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCc
Q 011827 110 MRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGC 189 (476)
Q Consensus 110 ~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv 189 (476)
+.++++.|.++++|+|++||++++++|+++++|++++|+|||+...... .++++|++++|+++ .+++ +.+++|+||+
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~-~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~ 82 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDG-RGGVIINLGKGIDI-EDDE-GEYVHVGGGE 82 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCC-cCeEEEECCCCceE-EEec-CCEEEEEcCC
Confidence 4678999999999999999999999999999999999999999866543 56899999999988 4666 5789999999
Q ss_pred cHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeCCCcEEEecCCcccCCCCCc
Q 011827 190 ILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYD 267 (476)
Q Consensus 190 ~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~d 267 (476)
.|.+|.+++.++|+. +.+..|.|+ ||||+++||+|+ ||. +.|.|+++++|++||++++...+ |
T Consensus 83 ~~~~l~~~~~~~Gl~GlE~l~giPG--tvGGai~mNAGa-----yG~~i~d~l~~v~vv~~~G~~~~~~~~--------~ 147 (284)
T TIGR00179 83 NWHKLVKYALKNGLSGLEFLAGIPG--TVGGAVIMNAGA-----YGVEISEVLVYATILLATGKTEWLTNE--------Q 147 (284)
T ss_pred cHHHHHHHHHHCCCcccccCCCCCc--hHHHHHHHhccc-----chhehhheEEEEEEEeCCCCEEEEEHH--------H
Confidence 999999999999995 444455555 499999999998 888 55688999999999999998765 5
Q ss_pred chhhhhcCC--CC-ceEEEEEEEEccC
Q 011827 268 LKHLFIGSE--GS-LGIVTKVSIHTPP 291 (476)
Q Consensus 268 L~~~~~Gs~--G~-lGIIt~~tl~l~p 291 (476)
+.+.+|.|. .. ..||++++|++.+
T Consensus 148 ~~f~YR~S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 148 LGFGYRTSIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred ccccCCccccCCCCcEEEEEEEEEecc
Confidence 555555542 22 2699999999843
No 22
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.89 E-value=2.1e-22 Score=203.50 Aligned_cols=188 Identities=18% Similarity=0.201 Sum_probs=156.3
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccH
Q 011827 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCIL 191 (476)
Q Consensus 112 ~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~ 191 (476)
+..+++.-|-+|+|++||.++|+.|++++..+++.|.||+..+-.+ .+|.+|++.+||+++++|++..++|||+|+++
T Consensus 45 r~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c--tdg~lisl~~lnkVv~~dpe~~tvTV~aGirl 122 (518)
T KOG4730|consen 45 RSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC--TDGLLISLDKLNKVVEFDPELKTVTVQAGIRL 122 (518)
T ss_pred hhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee--ccccEEEhhhhccceeeCchhceEEeccCcCH
Confidence 3445566688899999999999999999999999999999987665 57799999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhh
Q 011827 192 ENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHL 271 (476)
Q Consensus 192 ~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~ 271 (476)
.+|.+++++.|+.+|..|.. ...+|||++++++||++..-++.....+.-..++.++|.++.+++. ..+++|++
T Consensus 123 rQLie~~~~~GlsL~~~~si-~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-----~dpe~F~A 196 (518)
T KOG4730|consen 123 RQLIEELAKLGLSLPNAPSI-SEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-----KDPELFNA 196 (518)
T ss_pred HHHHHHHHhcCccccCCCce-ecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEeccc-----CCHHHHhh
Confidence 99999999999999965554 4568999999999997655344444444445555679998888765 56799999
Q ss_pred hhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHH
Q 011827 272 FIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSC 309 (476)
Q Consensus 272 ~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~ 309 (476)
..-|.|.||||.++||++.|.-+...+..+ .+..++
T Consensus 197 AkvSLG~LGVIs~VTl~~vp~Fk~s~t~~v--~n~~dl 232 (518)
T KOG4730|consen 197 AKVSLGVLGVISQVTLSVVPAFKRSLTYVV--TNDSDL 232 (518)
T ss_pred hhhcccceeEEEEEEEEEEecceeeeEEEE--echHHH
Confidence 999999999999999999998876554443 344443
No 23
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.89 E-value=2e-22 Score=201.20 Aligned_cols=190 Identities=21% Similarity=0.321 Sum_probs=158.4
Q ss_pred HHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccC
Q 011827 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (476)
Q Consensus 80 ~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~ 159 (476)
..+++.|-+..+. +. ...+++.|+ +.+++|.+++++.|+|.+|+++++++|++ ++|+.+.|+|||+..+..+.
T Consensus 3 ~~~~~~~~~~~~~--~~-~~~~L~~~t---t~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~ 75 (297)
T PRK14653 3 RKIIETLLKYGND--VF-INEEMKCHV---SFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPM 75 (297)
T ss_pred hHHHHHHHHhcCe--ec-cCCcccccC---EeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCc
Confidence 4567777777662 44 446788888 67999999999999999999999999999 99999999999998877654
Q ss_pred CCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-cc
Q 011827 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LH 237 (476)
Q Consensus 160 ~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~ 237 (476)
+|++|.+.+|++| +++. ..++|+||+.|.+|.+++.++|+. +++..|.|++ |||++.||+|+ ||. ++
T Consensus 76 -~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~ 144 (297)
T PRK14653 76 -DFVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGS--VGGAVYMNAGA-----YGWETA 144 (297)
T ss_pred -cEEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchh--HHHHHHHhCcc-----Cchhhh
Confidence 4899999789998 7763 579999999999999999999996 5555566665 99999999999 888 99
Q ss_pred ccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCC
Q 011827 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (476)
Q Consensus 238 d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p 293 (476)
|+|.++++++ +|++++...+ ..++++.+...++++.+ |||+++|++.|.+
T Consensus 145 d~l~~V~~~d-~g~v~~~~~~----e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 145 ENIVEVVAYD-GKKIIRLGKN----EIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred eeEEEEEEEC-CCEEEEEchh----hccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 9999999999 7888887653 34555666666655555 9999999998864
No 24
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=8.9e-22 Score=201.08 Aligned_cols=173 Identities=21% Similarity=0.309 Sum_probs=149.5
Q ss_pred hHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCC
Q 011827 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (476)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~ 179 (476)
.+|+.|+ +.++++.|++++.|+|++||++++++|+++++|+.++|+|||+.-.... .+|++|+++ ++.+ +++++
T Consensus 19 ~~L~~~t---t~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g-~~GvVI~l~-~~~i-~i~~~ 92 (363)
T PRK13903 19 VPLAPLT---TLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDG-FDGTVVRVA-TRGV-TVDCG 92 (363)
T ss_pred CCccccc---EeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCC-ccEEEEEeC-CCcE-EEeCC
Confidence 4677787 6789999999999999999999999999999999999999998532211 237999997 5887 67766
Q ss_pred CCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeCC-CcEEEec
Q 011827 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVIDML 256 (476)
Q Consensus 180 ~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~d-G~iv~~~ 256 (476)
+.+++|+||+.|.+|.+++.++|+. ++...|+|++ |||++.||+|+ ||. +.|.|.++++++.+ |++++..
T Consensus 93 ~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGT--VGGAv~mNaGa-----yG~ei~D~l~sV~vvd~~~G~~~~~~ 165 (363)
T PRK13903 93 GGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGS--AGATPVQNVGA-----YGQEVSDTITRVRLLDRRTGEVRWVP 165 (363)
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcc--hhhHhhcCCCh-----hHHHHhhhEeEEEEEECCCCEEEEEE
Confidence 6799999999999999999999998 7777788877 99999999999 887 89999999999965 9999876
Q ss_pred CCcccCCCCCcchhhhhcC---CCCceEEEEEEEEccCCC
Q 011827 257 GTLRKDNTGYDLKHLFIGS---EGSLGIVTKVSIHTPPKL 293 (476)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs---~G~lGIIt~~tl~l~p~p 293 (476)
.. |+++.+|+| .+..+|||+++|++.|..
T Consensus 166 ~~--------el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 166 AA--------DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred HH--------HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 54 899999997 234789999999999874
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.2e-20 Score=188.88 Aligned_cols=175 Identities=17% Similarity=0.230 Sum_probs=146.5
Q ss_pred hHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCC-CeEEEeC
Q 011827 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMN-NIITFDK 178 (476)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln-~I~~id~ 178 (476)
.+++.|+ +.++++.+++++.|+|++|+++++++|+++++|+.+.|+|||+...... .+|++|++++++ ++ ..+.
T Consensus 7 ~~L~~~t---t~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i-~~~~ 81 (295)
T PRK14649 7 EPLAPYT---SWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWEL-HEHG 81 (295)
T ss_pred Ccccccc---EeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEE-EEeC
Confidence 4677777 6789999999999999999999999999999999999999999765543 458999998754 55 4555
Q ss_pred CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecC
Q 011827 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLG 257 (476)
Q Consensus 179 ~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~ 257 (476)
++.+++|+||+.|.+|.+++.++|+. +++..|.|| ||||++.||+|.. .+.++|.|.++++++.+|++++..+
T Consensus 82 ~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG--TvGGa~~mNaGay----g~ei~d~l~~V~~~~~~g~~~~~~~ 155 (295)
T PRK14649 82 DTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG--TIGGAIYGNAGCY----GGDTATVLIRAWLLLNGSECVEWSV 155 (295)
T ss_pred CcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc--chhHHHHhhcccc----ceEhheeEEEEEEEeCCCCEEEEeH
Confidence 55589999999999999999999998 888889988 5999999999983 3459999999999999999998865
Q ss_pred CcccCCCCCcchhhhhcCC--CC--------ceEEEEEEEEccCCC
Q 011827 258 TLRKDNTGYDLKHLFIGSE--GS--------LGIVTKVSIHTPPKL 293 (476)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~--G~--------lGIIt~~tl~l~p~p 293 (476)
+ |+.+.++.|. .. --||++++|++.|..
T Consensus 156 ~--------el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 156 H--------DFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred H--------HcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 4 6666666552 11 138999999998764
No 26
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=1.8e-19 Score=179.51 Aligned_cols=180 Identities=20% Similarity=0.273 Sum_probs=149.7
Q ss_pred cEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCe
Q 011827 94 SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 173 (476)
Q Consensus 94 ~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I 173 (476)
++.+...+++.|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|||+.-......+|++|.+.+|+.+
T Consensus 13 ~~~~~~~~L~~~t---t~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~i 89 (302)
T PRK14650 13 NIKPQTKNLANYT---TYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNKI 89 (302)
T ss_pred CCCCCCccccccc---eeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEECCcCcE
Confidence 4555667788888 6789999999999999999999999999999999999999998654432134788888679988
Q ss_pred EEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeCCCc
Q 011827 174 ITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGD 251 (476)
Q Consensus 174 ~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~dG~ 251 (476)
+++. ..++|+||+.|.+|.+++.++|+. +++..|+||+ |||++.||+|. ||. +.|.|.++++++.+|+
T Consensus 90 -~~~~--~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~g~ 159 (302)
T PRK14650 90 -EIHD--NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGT--LGGAIWMNARC-----FGNEISEILDKITFIDEKGK 159 (302)
T ss_pred -EEeC--CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcc--hhHHHHhhCCc-----cccchheeEEEEEEEECCCC
Confidence 6653 469999999999999999999998 8877888877 99999999998 886 9999999999999999
Q ss_pred EEEecCCcccCCCCCcchhhhhcCC--CCceEEEEEEEEccCCCC
Q 011827 252 VIDMLGTLRKDNTGYDLKHLFIGSE--GSLGIVTKVSIHTPPKLS 294 (476)
Q Consensus 252 iv~~~~~~~k~~~g~dL~~~~~Gs~--G~lGIIt~~tl~l~p~p~ 294 (476)
+++...+ |+.+.+|.|. ..-.||++++|++.|.++
T Consensus 160 ~~~~~~~--------e~~f~YR~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 160 TICKKFK--------KEEFKYKISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred EEEEEHH--------HcCcccccccCCCCCEEEEEEEEEEcCCCH
Confidence 9887654 4445555542 122599999999988653
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=9e-19 Score=172.14 Aligned_cols=173 Identities=25% Similarity=0.402 Sum_probs=150.2
Q ss_pred hHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCC
Q 011827 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (476)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~ 179 (476)
.++++|+ +.++++.++.++.|++.+|+.++++++.+.++|+.+.|+|+|+.-..-. -++++|.+.+++.+ +++.+
T Consensus 7 ~~L~~~t---tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g-~~gvvi~~~~~~~~-~~~~~ 81 (291)
T COG0812 7 VPLKRYT---TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGG-IGGVVIKLGKLNFI-EIEGD 81 (291)
T ss_pred Cccccce---eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCC-CceEEEEcccccce-eeecc
Confidence 4577787 6789999999999999999999999999999999999999997543322 35899999998887 67777
Q ss_pred CCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeCCCcEEEecC
Q 011827 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLG 257 (476)
Q Consensus 180 ~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~dG~iv~~~~ 257 (476)
+..++|++|+.|.+|.+++.++|+. |+...|+||+ |||++.||+|. ||. +.|.+.++++++.+|++.+.+.
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGs--vGgav~mNaGA-----yG~Ei~d~~~~v~~ld~~G~~~~l~~ 154 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGS--VGGAVIMNAGA-----YGVEISDVLVSVEVLDRDGEVRWLSA 154 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcc--cchhhhccCcc-----cccchheeEEEEEEEcCCCCEEEEEH
Confidence 7799999999999999999999998 8877888887 99999999998 888 9999999999999999999876
Q ss_pred CcccCCCCCcchhhhhcCC--CCceEEEEEEEEccCC
Q 011827 258 TLRKDNTGYDLKHLFIGSE--GSLGIVTKVSIHTPPK 292 (476)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~--G~lGIIt~~tl~l~p~ 292 (476)
+ +|.+.+|-|. ....||++++|++.|-
T Consensus 155 ~--------el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 155 E--------ELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred H--------HhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 5 6666666663 2338999999999986
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.78 E-value=8.4e-19 Score=177.25 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=144.3
Q ss_pred hHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEe-C
Q 011827 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD-K 178 (476)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id-~ 178 (476)
.+++.|+ +.+++|.+++++.|+|.+|+++++++|+++++|+.+.|+|||+.-.. . ..|++|.+ +++++ +++ .
T Consensus 7 ~~L~~~t---t~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~-~~g~vI~~-~~~~~-~~~~~ 79 (334)
T PRK00046 7 HSLKPLN---TFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-D-FDGTVLLN-RIKGI-EVLSE 79 (334)
T ss_pred Ccccccc---eeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-C-CCEEEEEe-cCCce-EEEec
Confidence 3577777 67899999999999999999999999999999999999999997765 4 56888887 48888 563 2
Q ss_pred CC--CEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeCC-CcEE
Q 011827 179 GS--GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVI 253 (476)
Q Consensus 179 ~~--~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~d-G~iv 253 (476)
++ ..++|+||+.|.+|.+++.++|+. +++..|+||+ |||++.||+|. ||. +.|.|.++++++.+ |+++
T Consensus 80 ~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~v~d~~~g~~~ 152 (334)
T PRK00046 80 DDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGT--VGAAPIQNIGA-----YGVELKDVCDYVEALDLATGEFV 152 (334)
T ss_pred CCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcc--hhHHHHhcCCc-----CcccHheeEEEEEEEECCCCcEE
Confidence 22 279999999999999999999998 7777888877 99999999998 886 99999999999987 9999
Q ss_pred EecCCcccCCCCCcchhhhhcCC--CC---ceEEEEEEEEccCC
Q 011827 254 DMLGTLRKDNTGYDLKHLFIGSE--GS---LGIVTKVSIHTPPK 292 (476)
Q Consensus 254 ~~~~~~~k~~~g~dL~~~~~Gs~--G~---lGIIt~~tl~l~p~ 292 (476)
+...+ |+.+.+|.|. .. --||++++|++.|-
T Consensus 153 ~~~~~--------e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 153 RLSAA--------ECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EEEHH--------HcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 88765 5555556552 22 24999999999885
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=3.7e-18 Score=172.52 Aligned_cols=142 Identities=15% Similarity=0.295 Sum_probs=121.9
Q ss_pred cEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCe
Q 011827 94 SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 173 (476)
Q Consensus 94 ~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I 173 (476)
.++....+|+.|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|||+.....+ ..|++|.+.+|+.+
T Consensus 10 ~~~~~~~~La~~t---T~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g-~~G~VI~l~~~~~i 85 (354)
T PRK14648 10 RITRRNVPLAERC---SFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEG-VPGLMLSLRRFRSL 85 (354)
T ss_pred eeeecCCCccccc---eeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCC-ccEEEEEeCCcCce
Confidence 3455556788888 6799999999999999999999999999999999999999998665433 35899998779887
Q ss_pred EEE---eCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEe
Q 011827 174 ITF---DKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVL 247 (476)
Q Consensus 174 ~~i---d~~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~ 247 (476)
++ +.+...++|+||+.|.+|.+++.++|+. ++...|+||+ |||++.||+|. ||. +.|.|.++++++
T Consensus 86 -~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGT--VGGAv~mNAGA-----yG~ei~d~l~~V~v~d 156 (354)
T PRK14648 86 -HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGS--VGGAAYMNARC-----YGRAIADCFHSARTLV 156 (354)
T ss_pred -EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcc--hhhHhhhcCCc-----cceEhhheEEEEEEEe
Confidence 54 2222479999999999999999999998 7777888877 99999999998 886 999999999994
No 30
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.67 E-value=6.3e-17 Score=156.57 Aligned_cols=174 Identities=28% Similarity=0.366 Sum_probs=135.7
Q ss_pred CCCceeEEEeecCCHHHHHHHHHHHHHHcCCceeEEEEeCHHHHHHHHHHhcCCCCCCCCCCcceEEEEeecCCchhhHH
Q 011827 292 KLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDR 371 (476)
Q Consensus 292 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~ 371 (476)
+|+...++.+.|++++++.+++..++.. +..|+++|++|...++.+..... . +.+.. ..+++++|+.|..++.+.
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~-g~~p~a~el~d~~~~~~~~~~~~-~--~~~~~-~~~~llv~~~g~~~~~~~ 75 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQS-GIIPSAIELLDSAALKLALEHWG-E--PLPPE-GGAVLLVEFEGSDEEAVE 75 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHH-CSSCCECCCCHHHHHHHHHHSEE-E--TSSTT-TSEEEEEECCCHHHCCHH
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHc-CCCceEEeeeCHHHHHHHHhhcC-C--CccCC-cccEEEEEECCCcHHHHH
Confidence 4788888999999999999999887665 77899999999999888876542 2 22222 567899999998866666
Q ss_pred HHHH-HHHHHHhcCCCeeeEEEecCHHHHHHHHHHHHHHHHHHH-----hcCCceEEEEEEcCcchHHHHHHHHHHHhhc
Q 011827 372 EKLE-AFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALM-----KAGAVYKYDLSLPVEKMYDLVEKMRQRLGET 445 (476)
Q Consensus 372 ~~l~-~~~~~~~~~~~~~~~~~~~d~~~~~~lw~~R~~~~~~~~-----~~g~~~~~D~~VP~~~l~~~~~~~~~~~~~~ 445 (476)
++++ .+.+.+...+ ..+..++.+.++..++|+.|+.+.+.+. ..+..+.+|++||+++++++++.+++.++++
T Consensus 76 ~~~~~~i~~~~~~~~-~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~ 154 (248)
T PF02913_consen 76 EQLEAEIEEICKKYG-GEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREY 154 (248)
T ss_dssp HHHHHHHHHHHCTCT-CCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcC-CceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhc
Confidence 6666 5555444433 3456788888888899999998887322 2223468999999999999999999999999
Q ss_pred C-CEEEEeecCCCcEEEEeccCCCchh
Q 011827 446 A-KVIGYGHLGDGNLHLNISAPRYDDM 471 (476)
Q Consensus 446 g-~~~~~GH~gdGnlH~~i~~~~~~~~ 471 (476)
+ ....|||+||||+|++++++..+++
T Consensus 155 ~~~~~~~gH~~~g~~h~~~~~~~~~~~ 181 (248)
T PF02913_consen 155 GLEVCHFGHAGDGNLHLYILFDPRDPE 181 (248)
T ss_dssp TEEEEEEEEEEECEEEEEEEEETTSHH
T ss_pred cccccceEEccCCeEEEEeecccchHH
Confidence 8 7888999999999999998766543
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=9.6e-16 Score=150.88 Aligned_cols=160 Identities=20% Similarity=0.228 Sum_probs=129.8
Q ss_pred hHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCC-CCCeEEEeC
Q 011827 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDK 178 (476)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~-ln~I~~id~ 178 (476)
.+++.|+ +.++++.+++++ |+|.+|+++++ ++|+.+.|+|||+.-.... .+|++|.+.+ ++.+ +++
T Consensus 7 ~~L~~~t---t~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g-~~g~vI~l~~~~~~~-~~~- 73 (273)
T PRK14651 7 VPLARYT---TLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAG-VPERVIRLGGEFAEW-DLD- 73 (273)
T ss_pred Ccccccc---EeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCC-cceEEEEECCcceeE-eEC-
Confidence 3677777 578999999999 99999999988 4899999999998654422 2488888866 6655 443
Q ss_pred CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeCCCcEEEec
Q 011827 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (476)
Q Consensus 179 ~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~dG~iv~~~ 256 (476)
+ +|+||+.|.+|.+++.++|+. +++..|+|++ |||++.||+|. ||. +.|.|.++++++ +|++++..
T Consensus 74 -~---~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~~~~-~g~~~~~~ 141 (273)
T PRK14651 74 -G---WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQ--VGGAVKMNAGT-----RFGEMADALHTVEIVH-DGGFHQYS 141 (273)
T ss_pred -C---EEECCCcHHHHHHHHHHCCCcchhhhcCCCcc--hhhHHHhhCCc-----cccChheeEEEEEEEE-CCCEEEEE
Confidence 2 699999999999999999997 7777788877 99999999998 886 999999999997 89999887
Q ss_pred CCcccCCCCCcchhhhhcCC-CCceEEEEEEEEccCC
Q 011827 257 GTLRKDNTGYDLKHLFIGSE-GSLGIVTKVSIHTPPK 292 (476)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs~-G~lGIIt~~tl~l~p~ 292 (476)
.+ |+.+.+|.|. -.--||++++|++.|.
T Consensus 142 ~~--------e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 142 PD--------ELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred HH--------HccccccccCCCCCEEEEEEEEEECCC
Confidence 65 5555555542 1124999999999875
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.59 E-value=1.7e-15 Score=150.82 Aligned_cols=148 Identities=18% Similarity=0.264 Sum_probs=130.4
Q ss_pred EEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEE
Q 011827 164 IINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGL 243 (476)
Q Consensus 164 vIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~ 243 (476)
-|++..|.+|+++|.+..+|+|||+++.+++.++|-+.|+++|+.|-. +..||||.+..-+--+++++||...+.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~El-dDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPEL-DDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeeccc-ccceecceeeecccccccchhhhHHhhhhee
Confidence 345556778899999999999999999999999999999999986654 6789999997777677789999999999999
Q ss_pred EEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 244 EAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 244 evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
|||++||+++++.++ |...|||.++-.|.||+|....+++|+.|..+....-+++....++..+-+.++
T Consensus 184 EvVladGelv~~t~d----ne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e~ 252 (543)
T KOG1262|consen 184 EVVLADGELVRVTPD----NEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITEL 252 (543)
T ss_pred EEEecCCeEEEecCC----cccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHhh
Confidence 999999999998763 456799999999999999999999999999999999999999888776665553
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.51 E-value=8.2e-14 Score=135.99 Aligned_cols=156 Identities=14% Similarity=0.097 Sum_probs=122.9
Q ss_pred hhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeC
Q 011827 99 EDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK 178 (476)
Q Consensus 99 ~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~ 178 (476)
+.+++.|+ +.+++|.+++++.|++.+ + ++|+.+.|+|||+.-.... .++ ++-+++++.+ +++.
T Consensus 4 ~~~L~~~t---t~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g-~~~-vv~~~~~~~~-~~~~ 66 (257)
T PRK13904 4 IIDFSKYS---SVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNP-KNL-AILGKNFDYI-KIDG 66 (257)
T ss_pred CcchhhcC---ceeECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCC-ccE-EEEccCcCeE-EEeC
Confidence 35677887 679999999999999987 6 7999999999998654432 234 4444568887 6654
Q ss_pred CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeCCCcEEEec
Q 011827 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (476)
Q Consensus 179 ~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~dG~iv~~~ 256 (476)
..++|+||+.|.+|.+++.++|+. +++..|.|++ |||++.||+|. ||. ++|.|.++++++ | +..
T Consensus 67 --~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGt--VGGAv~mNaGa-----~g~ei~d~l~~V~~~~--~---~~~ 132 (257)
T PRK13904 67 --ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGT--LGGLVKMNAGL-----KEYEISNNLESICTNG--G---WIE 132 (257)
T ss_pred --CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCcc--HHHHHHhcCCc-----CccchheeEEEEEEEe--e---EEe
Confidence 479999999999999999999998 8877888877 99999999998 876 999999999998 4 222
Q ss_pred CCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCC
Q 011827 257 GTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (476)
Q Consensus 257 ~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~ 294 (476)
++ |+.+.+|.|.=. .||++++|++.|.++
T Consensus 133 ~~--------e~~f~YR~S~~~-~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 133 KE--------DIGFGYRSSGIN-GVILEARFKKTHGFD 161 (257)
T ss_pred HH--------HCcccccCcCCC-cEEEEEEEEECCCCH
Confidence 22 555555555311 399999999998653
No 34
>PRK09799 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.00034 Score=69.17 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=89.5
Q ss_pred EEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHH
Q 011827 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL 198 (476)
Q Consensus 119 ~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l 198 (476)
-++.|+|.+|..++++- ++=...+.+|||.+..........++||++++ ....+..+++.++++|++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 46899999999998863 32224668999998432111134689999986 554555567789999999999998753
Q ss_pred HhC-CCC-----cccCCCCCCCccccccccCCCCCCCcccccc--ccccEeEEEEEeCCCcEEEecCCcccCCCCCcchh
Q 011827 199 DDH-GFI-----MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS--LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKH 270 (476)
Q Consensus 199 ~~~-Gl~-----l~~~~g~~~~~tvGG~va~nagG~~~~~yG~--~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~ 270 (476)
.-. .+. +. +|..-+.+|+||++++.... +. ..=..++.+|+..+++.+ .+..
T Consensus 80 ~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~p~------sD~~p~LlAldA~v~l~~~r~v-------------pl~~ 139 (258)
T PRK09799 80 FIPAALREALGFVY-SRHLRNQSTIGGEIAARQEE------SVLLPVLLALDAELVFGNGETL-------------SIED 139 (258)
T ss_pred ccHHHHHHHHHHhC-CHHHhccchhHHHhhcCCcc------HHHHHHHHHcCCEEEEecCcEE-------------eHHH
Confidence 211 111 22 45566789999999875321 11 111234555555555322 2334
Q ss_pred hhhcCCCCceEEEEEEEE
Q 011827 271 LFIGSEGSLGIVTKVSIH 288 (476)
Q Consensus 271 ~~~Gs~G~lGIIt~~tl~ 288 (476)
++.|..+ .|||++.+.
T Consensus 140 f~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 140 YLACPCD--RLLTEIIIP 155 (258)
T ss_pred hcCCCCC--cEEEEEEcC
Confidence 4444433 479998774
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.12 E-value=0.00014 Score=67.33 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=64.5
Q ss_pred cEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcc--cCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHH
Q 011827 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (476)
Q Consensus 118 ~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~ 195 (476)
.-+++|+|.+|+.++++ ... ...+.+|||.+..... ......+||++++...-.++.+++.+++||++++.++.
T Consensus 3 ~~~~~P~sl~ea~~ll~--~~~--~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~ 78 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA--KGP--DARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELE 78 (171)
T ss_dssp -EEEE-SSHHHHHHHHH--HGT--TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHH
T ss_pred eEEEccCCHHHHHHHHh--cCC--CCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHh
Confidence 45799999999999998 222 3466788888632111 01235899999865544444456789999999999998
Q ss_pred HH---------HHhCCCCcccCCCCCCCccccccccCCC
Q 011827 196 SF---------LDDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 196 ~~---------l~~~Gl~l~~~~g~~~~~tvGG~va~na 225 (476)
+. |.++=..+. .+..-+.+|+||++++..
T Consensus 79 ~~~~~~~~~p~L~~~~~~ia-s~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 79 ESPLIQQYFPALAQAARRIA-SPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHTB
T ss_pred hcchhhhhHHHHHHHHHHhC-CHhHeeeeeeccccccCc
Confidence 86 111111122 344557789999996654
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=97.11 E-value=0.00087 Score=66.20 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=67.9
Q ss_pred EEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHH-
Q 011827 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL- 198 (476)
Q Consensus 120 vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l- 198 (476)
+++|+|.+|..++++- ++=.-.+.+|||.+.-........++||++++ ....++.+++.++++|++++.++.+..
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcc
Confidence 6899999999998763 32123567899998533211123588999886 554455556789999999999987632
Q ss_pred -----HhCCCCcccCCCCCCCccccccccCCC
Q 011827 199 -----DDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 199 -----~~~Gl~l~~~~g~~~~~tvGG~va~na 225 (476)
.+.=..+. +|...+..|+||++++..
T Consensus 80 ~~~~L~~aa~~va-~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 80 TPAALKEALGFVY-SRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred hHHHHHHHHHHhC-CHHHhccccHHHHhhcCC
Confidence 11111122 466678899999998754
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=96.91 E-value=0.0061 Score=61.33 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=67.7
Q ss_pred EEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc-cc-CCCeEEEEcCCCCCeEEEe-CCCCEEEEecCccHHHHH
Q 011827 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-VP-VFDEVIINMGSMNNIITFD-KGSGVLVCEAGCILENLV 195 (476)
Q Consensus 119 ~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~-~~-~~~gvvIdl~~ln~I~~id-~~~~~v~V~aGv~~~~L~ 195 (476)
-++.|+|.+|..++++. +. ...+.+|||.+.... .. .....+||++++.....|. .++..++++|++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 47899999999998874 22 236689999873211 11 1236899999865544444 244679999999999998
Q ss_pred H--HHHhCC-------CCcccCCCCCCCccccccccCCC
Q 011827 196 S--FLDDHG-------FIMPLDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 196 ~--~l~~~G-------l~l~~~~g~~~~~tvGG~va~na 225 (476)
+ .+.++- ..+ -+|..-+.+|+||+|++..
T Consensus 82 ~~~~i~~~~p~L~~a~~~i-a~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSI-GGPQIRNVATIGGNICNGA 119 (291)
T ss_pred cChHHHHHhHHHHHHHHHh-CCHHHhcceecccccccCC
Confidence 6 222110 012 2456667899999998653
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.59 E-value=0.0037 Score=66.98 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=73.1
Q ss_pred CccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHH
Q 011827 116 SSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILEN 193 (476)
Q Consensus 116 ~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~--~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~ 193 (476)
...-+++|+|.+|+.++++. +. ...+.+|||.+.-.. -......+||++++..+..+..++..++++|++++.+
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~e 266 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTD 266 (467)
T ss_pred CCceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHH
Confidence 34568999999999999874 22 246688999973221 0112368999998655544555567899999999999
Q ss_pred HHHHHHhC--CCC----cccCCCCCCCccccccccCCC
Q 011827 194 LVSFLDDH--GFI----MPLDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 194 L~~~l~~~--Gl~----l~~~~g~~~~~tvGG~va~na 225 (476)
+.+.+.++ .+. .--.|..-+.+|+||+|++..
T Consensus 267 l~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 267 AYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred HHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC
Confidence 98766543 111 112455667899999998753
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=96.08 E-value=0.006 Score=62.10 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=67.0
Q ss_pred EEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCccc--CCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHH
Q 011827 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP--VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (476)
Q Consensus 119 ~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~--~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~ 196 (476)
-+++|+|.+|..++++-. + .-.+.+|||.+...... .....+||++++..+..++.+++.+++||++++.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 478999999999988742 2 22568899976322111 12368999997654434444567899999999999965
Q ss_pred H--HHhC-------CCCcccCCCCCCCccccccccCCC
Q 011827 197 F--LDDH-------GFIMPLDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 197 ~--l~~~-------Gl~l~~~~g~~~~~tvGG~va~na 225 (476)
. +.++ =..+ -+|..-+.+|+||++++..
T Consensus 82 ~~~i~~~~p~L~~a~~~i-as~qIRN~aTiGGNi~~~~ 118 (321)
T TIGR03195 82 DALVRTRWPALAQAARAV-AGPTHRAAATLGGNLCLDT 118 (321)
T ss_pred ChhhHhHhHHHHHHHHHh-CCHHHhCceecHHhhhccC
Confidence 3 1111 0012 2455667899999999743
No 40
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=95.93 E-value=0.0055 Score=60.74 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCccc---CCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHH--
Q 011827 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP---VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF-- 197 (476)
Q Consensus 123 P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~---~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~-- 197 (476)
|+|.+|+.++++.. + ...+.+|||.+.-.... .....+||++++.....++.+++.++++|++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 78999999988743 2 23568899987432111 123689999987666566666788999999999999742
Q ss_pred HHhC--CCC----cccCCCCCCCccccccccCC
Q 011827 198 LDDH--GFI----MPLDLGAKGSCQIGGNVSTN 224 (476)
Q Consensus 198 l~~~--Gl~----l~~~~g~~~~~tvGG~va~n 224 (476)
+.++ .+. .--+|..-+.+|+||++++.
T Consensus 77 i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 1111 010 11245566789999999865
No 41
>PLN02906 xanthine dehydrogenase
Probab=94.65 E-value=0.057 Score=64.94 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=71.6
Q ss_pred cEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHH
Q 011827 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (476)
Q Consensus 118 ~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~--~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~ 195 (476)
.-+++|+|.+|+.++++... + ..+.+|||.+.-.. .-....++||++++..+..+..++..++++|++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~~--~--a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEYP--D--AKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhCC--C--CEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 45899999999999877431 2 35678999983221 011236899999866555555566789999999999999
Q ss_pred HHHHhCCC--------Cc---------ccCCCCCCCccccccccCCC
Q 011827 196 SFLDDHGF--------IM---------PLDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 196 ~~l~~~Gl--------~l---------~~~~g~~~~~tvGG~va~na 225 (476)
+.|.+.=. .+ --.|..-+.+|+||+|++..
T Consensus 305 ~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 305 NLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 87554310 01 12455667899999998743
No 42
>PLN00192 aldehyde oxidase
Probab=94.55 E-value=0.062 Score=64.69 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=72.5
Q ss_pred ccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHH
Q 011827 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (476)
Q Consensus 117 p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~ 196 (476)
..-++.|+|.+|+.++++.....+-...+..|||.+.-.-....-.++||++++..+..+..++..++++|++++.++..
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 34689999999999998742100112456788888732111112368999998655545555667899999999999998
Q ss_pred HHHhCCC---Ccc---------cCCCCCCCccccccccCCC
Q 011827 197 FLDDHGF---IMP---------LDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 197 ~l~~~Gl---~l~---------~~~g~~~~~tvGG~va~na 225 (476)
.+..+-. .+| -.|..-+.+|+||+|++..
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 7765421 111 1355567899999998753
No 43
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=94.31 E-value=0.081 Score=63.68 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=71.5
Q ss_pred cEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc-c-cCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHH
Q 011827 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (476)
Q Consensus 118 ~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~-~-~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~ 195 (476)
.-++.|+|.+|+.++++.. . .-.+.+|||.+.-.. . ......+||++++..+..+..++..++++|++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 4589999999999988742 2 235678999983221 0 11225899999866655555566789999999999999
Q ss_pred HHHHhC---------CCC--c------ccCCCCCCCccccccccCCC
Q 011827 196 SFLDDH---------GFI--M------PLDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 196 ~~l~~~---------Gl~--l------~~~~g~~~~~tvGG~va~na 225 (476)
+.|.+. ... + --.|..-+.+|+||+|++..
T Consensus 313 ~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 313 DILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 876533 100 1 11355667899999998754
No 44
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.22 Score=51.01 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=81.5
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccC---CCeEEEEcCCCCCeEEEeCCCCEEEEecC
Q 011827 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAG 188 (476)
Q Consensus 112 ~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~---~~gvvIdl~~ln~I~~id~~~~~v~V~aG 188 (476)
.+++..+.++.|.+.+|.++++.. .-+ .++..|+|.+. --+.. +-..+|-...+..+..++...+.++++||
T Consensus 198 ~~~~~~~r~~~P~~l~D~a~l~aa--~P~--AtivAGsTDvg-LwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAg 272 (493)
T COG4630 198 EVGSGDDRFIVPATLADFADLLAA--HPG--ATIVAGSTDVG-LWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAG 272 (493)
T ss_pred EecCCCceeEeeccHHHHHHHHhh--CCC--CEEEecCcchh-hHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccC
Confidence 345556789999999999998853 223 34556777752 11110 11345655665555556667789999999
Q ss_pred ccHHHHHHHHHhCCCCcc---cCCC---CCCCccccccccCCCCCCCcccccc--ccccEeEEEEEeCCCcEEE
Q 011827 189 CILENLVSFLDDHGFIMP---LDLG---AKGSCQIGGNVSTNAGGLRLVRYGS--LHGNVLGLEAVLANGDVID 254 (476)
Q Consensus 189 v~~~~L~~~l~~~Gl~l~---~~~g---~~~~~tvGG~va~nagG~~~~~yG~--~~d~V~~~evV~~dG~iv~ 254 (476)
+++.+.+++|..+=-.|. .-.| ..+..|+||+|++++- -|. -.=-.++.++++-.|+-.+
T Consensus 273 vt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSP------IGDtPPaLIALgA~ltLr~g~~~R 340 (493)
T COG4630 273 VTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSP------IGDTPPALIALGATLTLRSGDGRR 340 (493)
T ss_pred ccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCc------CCCCCchhhhcCcEEEEEecCCcc
Confidence 999999999986521110 0011 2356789999987542 222 1114567777776665333
No 45
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=92.18 E-value=0.37 Score=48.26 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=69.4
Q ss_pred ccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcc--cCCCeEEEEcCCCCCeE-EEeCCCCEEEEecCccHHH
Q 011827 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNII-TFDKGSGVLVCEAGCILEN 193 (476)
Q Consensus 117 p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~I~-~id~~~~~v~V~aGv~~~~ 193 (476)
+--+.+|.|.+|...+++- .+ -..+.+|||++....- -....-+||++++...+ ....+++.+++||-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~---~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLAR---AP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHHh---CC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 4457899999998888873 33 3456799999863211 01235688988864221 2344566799999999999
Q ss_pred HHHHHHhCCCC--------cccCCCCCCCccccccccCCCC
Q 011827 194 LVSFLDDHGFI--------MPLDLGAKGSCQIGGNVSTNAG 226 (476)
Q Consensus 194 L~~~l~~~Gl~--------l~~~~g~~~~~tvGG~va~nag 226 (476)
+.+--.-+... .--+|..-+.+|+||+++.+.+
T Consensus 79 i~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p 119 (284)
T COG1319 79 IARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADP 119 (284)
T ss_pred HHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCC
Confidence 97433222221 2236777788999999876543
No 46
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=66.72 E-value=12 Score=37.18 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=32.0
Q ss_pred EEEeecCCHHHHHHHHHHHHHHcCCceeEEEEeCHHHHHHHHHHhc
Q 011827 298 LAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLE 343 (476)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~ 343 (476)
++++..+|.+.+.+.-..+.......|.+.|||.+.+.+++.+|.+
T Consensus 1 VFYIGTNd~~~L~~lRR~iL~~f~~LPisgEYmHRdafdia~~YGK 46 (291)
T PF09330_consen 1 VFYIGTNDPAVLTDLRRHILSNFKNLPISGEYMHRDAFDIAEKYGK 46 (291)
T ss_dssp EEEEEES-HHHHHHHHHHHHHH-SS--SEEEEEEHHHHHHH-----
T ss_pred CeEeccCCHHHHHHHHHHHHhCCccCChhhhhhhhHHHHHHHHhcc
Confidence 4678889999888877777777788899999999999999888753
No 47
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=55.36 E-value=20 Score=42.21 Aligned_cols=106 Identities=15% Similarity=0.074 Sum_probs=66.4
Q ss_pred cEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHH
Q 011827 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF 197 (476)
Q Consensus 118 ~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~ 197 (476)
.-...|.|.+|+.++.+ .........|+|...---...+-.-.||.+.......++.++..+.+++++++.++.+.
T Consensus 215 ~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred cEEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHH
Confidence 34578999999999988 32334445566654211111122457887765543344545567899999999999888
Q ss_pred HHhCCCC--------------cccCCCCCCCccccccccCCCCC
Q 011827 198 LDDHGFI--------------MPLDLGAKGSCQIGGNVSTNAGG 227 (476)
Q Consensus 198 l~~~Gl~--------------l~~~~g~~~~~tvGG~va~nagG 227 (476)
|.+.--. .-......+.+|+||+|.+.+.+
T Consensus 291 l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~ 334 (1257)
T KOG0430|consen 291 LRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQS 334 (1257)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEeccCC
Confidence 7654210 01123445678899999887655
No 48
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=41.16 E-value=35 Score=37.16 Aligned_cols=32 Identities=9% Similarity=0.362 Sum_probs=27.6
Q ss_pred CCCccEEEecCCHHHHHHHHHHhhhCC-CeEEE
Q 011827 114 RGSSKLLLQPRTTNEVSQILKYCNSRL-LAVVP 145 (476)
Q Consensus 114 ~~~p~~vv~P~s~~eV~~iv~~a~~~~-~~v~~ 145 (476)
.|.|-.+++|.|.++|.+++++|+++. .||+.
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 366888999999999999999999985 67766
No 49
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=37.48 E-value=52 Score=28.27 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred hccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeE-EEeCCC
Q 011827 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (476)
Q Consensus 105 y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v-~~~GgG 149 (476)
|...| ...|.+..|+...|++|+.++.+.|.+.+++. .++=+|
T Consensus 38 ~~~~W--~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG 81 (113)
T PRK04322 38 WLEEW--LNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAG 81 (113)
T ss_pred HHHHH--HHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 44456 34688999999999999999999999999874 334333
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=31.86 E-value=1.1e+02 Score=22.25 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=34.4
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|..+|. .+|.|..+.+...+........++.|.+.+++..++..+
T Consensus 13 ~~l~~~f~----~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 13 EELRDFFS----QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp HHHHHHHH----TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 46666664 367777777766545556777899999999999988766
No 51
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=31.68 E-value=1.6e+02 Score=21.84 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=35.1
Q ss_pred cchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
||..++. .+|.|.++.+...+.......+++.|.+.+++.+++...
T Consensus 14 ~l~~~f~----~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 14 DLRNFFS----RFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp HHHHHCT----TSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 5555543 346689999888766666788899999999998887764
No 52
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.22 E-value=83 Score=29.44 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=29.5
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhhCCCeE
Q 011827 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV 143 (476)
Q Consensus 112 ~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v 143 (476)
.+.|.|+.||..+|++++.++.+.|++.+++.
T Consensus 120 e~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t 151 (190)
T KOG3282|consen 120 ENCGQAKIVVKAESEEELMELQKDAKKLGLYT 151 (190)
T ss_pred HHcCCceEEEEcCCHHHHHHHHHHHHHcCCcE
Confidence 56789999999999999999999999999874
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=25.96 E-value=1.2e+02 Score=22.99 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=30.3
Q ss_pred cchhhhhcCCCCceEEEEEE-EEccCC---CCceeEEEeecCCHHHHHHHHHHH
Q 011827 267 DLKHLFIGSEGSLGIVTKVS-IHTPPK---LSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~~t-l~l~p~---p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
||...+.--...+|-|+++. +...+. +......++.|.+.+++.+|+..+
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l 57 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL 57 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 44444432223566667664 333221 334566888999999999988765
No 54
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=25.89 E-value=76 Score=26.75 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCCc-cEEEecCCHHHHHHHHHHhhhCCCeEEEeCC
Q 011827 114 RGSS-KLLLQPRTTNEVSQILKYCNSRLLAVVPQGG 148 (476)
Q Consensus 114 ~~~p-~~vv~P~s~~eV~~iv~~a~~~~~~v~~~Gg 148 (476)
+..| ..++++.+..|++.++.+|.+.|+||...+.
T Consensus 53 RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d 88 (100)
T PF15608_consen 53 RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPD 88 (100)
T ss_pred hcCCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCC
Confidence 3345 5678888889999999999999999988875
No 55
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=25.32 E-value=66 Score=32.41 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHhhhCCCeEEE
Q 011827 123 PRTTNEVSQILKYCNSRLLAVVP 145 (476)
Q Consensus 123 P~s~~eV~~iv~~a~~~~~~v~~ 145 (476)
.-|.+|+++++++|+++|+.|+|
T Consensus 68 ~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEE
Confidence 34889999999999999999988
No 56
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.74 E-value=68 Score=32.84 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHhhhCCCeEEEe
Q 011827 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (476)
Q Consensus 124 ~s~~eV~~iv~~a~~~~~~v~~~ 146 (476)
-|.+|+.+++++|+++|+.|+|-
T Consensus 72 YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 38999999999999999999883
No 57
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=24.52 E-value=98 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=27.3
Q ss_pred CCCc-cEEEecCCHHHHHHHHHHhhhCCCeEEEe
Q 011827 114 RGSS-KLLLQPRTTNEVSQILKYCNSRLLAVVPQ 146 (476)
Q Consensus 114 ~~~p-~~vv~P~s~~eV~~iv~~a~~~~~~v~~~ 146 (476)
+..| ..|+.|.+.+|+..+++.|-+.+-|+.+|
T Consensus 120 ~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 120 RAIPNMTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3444 56899999999999999998877788776
No 58
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.37 E-value=73 Score=29.75 Aligned_cols=61 Identities=11% Similarity=0.197 Sum_probs=43.6
Q ss_pred cEEEec---CCHHHHHHHHHHhhhC--CCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeC
Q 011827 118 KLLLQP---RTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK 178 (476)
Q Consensus 118 ~~vv~P---~s~~eV~~iv~~a~~~--~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~ 178 (476)
.+|+.| +|++||+.++..++.. .+-+.+-..|+.+..-......+...|++.+.++++++.
T Consensus 56 ~~vf~padvtsekdv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~ 121 (260)
T KOG1199|consen 56 KVVFTPADVTSEKDVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNV 121 (260)
T ss_pred ceEEeccccCcHHHHHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeee
Confidence 456666 5789999999988753 356677777777755555555667778888888776664
No 59
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.72 E-value=73 Score=32.12 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHhhhCCCeEEE
Q 011827 123 PRTTNEVSQILKYCNSRLLAVVP 145 (476)
Q Consensus 123 P~s~~eV~~iv~~a~~~~~~v~~ 145 (476)
+-|.+|+.+++++|+++|+.|+|
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEe
Confidence 56999999999999999999988
No 60
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=23.12 E-value=1.9e+02 Score=24.33 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCC
Q 011827 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHG 202 (476)
Q Consensus 123 P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~G 202 (476)
-++..||..+++-..+++.++.++- +.+. . .+ ..|+++|++++++....|..-.+-...+...-
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~~-~~g~---------~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~a~~ 67 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVRH-PRGQ---------S-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLNAEE 67 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEET-T-SS---------E-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHTT--
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEEe-CCCC---------E-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhcCCc
Confidence 4688999999999999999999883 2221 1 22 36778999999999988877666666655554
Q ss_pred CCc
Q 011827 203 FIM 205 (476)
Q Consensus 203 l~l 205 (476)
+.+
T Consensus 68 ~~~ 70 (108)
T PF07317_consen 68 LTF 70 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 61
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.00 E-value=1.2e+02 Score=30.63 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=24.8
Q ss_pred ccEEEecCC------HHHHHHHHHHhhhC------CCeEEEeCCCCC
Q 011827 117 SKLLLQPRT------TNEVSQILKYCNSR------LLAVVPQGGNTG 151 (476)
Q Consensus 117 p~~vv~P~s------~~eV~~iv~~a~~~------~~~v~~~GgGt~ 151 (476)
...+++|.. ++++.+.++.+++. .+=|++||||+-
T Consensus 42 ~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 42 VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 355666654 68899999988764 366777888764
No 62
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=22.79 E-value=67 Score=32.64 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHhhhCCCeEEE--eCCCCC
Q 011827 123 PRTTNEVSQILKYCNSRLLAVVP--QGGNTG 151 (476)
Q Consensus 123 P~s~~eV~~iv~~a~~~~~~v~~--~GgGt~ 151 (476)
.-|.+|+++++++|+++|+.|+| -.=||.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 34889999999999999999988 344554
No 63
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=22.53 E-value=1.5e+02 Score=25.33 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=30.1
Q ss_pred cCCCccEEEecCCHHHHHHHHHHhhhCCCeEE-EeCCC
Q 011827 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVV-PQGGN 149 (476)
Q Consensus 113 ~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~-~~GgG 149 (476)
..+.+..|+...|++++.++.+.|.+.++|.. ++-.|
T Consensus 47 ~~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag 84 (116)
T PF01981_consen 47 NNGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAG 84 (116)
T ss_dssp HTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETS
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 46789999999999999999999999998853 34444
No 64
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=22.14 E-value=1.9e+02 Score=30.00 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=45.9
Q ss_pred HHHHHHHhhhCCC---cEEe--ChhHHHhhc--cccccccCCCc-cEEEecCCHHHHHHHHHHhhhCCCeEEE
Q 011827 81 EDVSYFKELLGEK---SVIQ--DEDVLLAAN--EDWMRKYRGSS-KLLLQPRTTNEVSQILKYCNSRLLAVVP 145 (476)
Q Consensus 81 ~~~~~L~~ilg~~---~v~~--~~~~l~~y~--~d~~~~~~~~p-~~vv~P~s~~eV~~iv~~a~~~~~~v~~ 145 (476)
++..+.+.+|++. .|.. ..+.+..+. ..|..+|+... +.--+-.+++|.+..|+.|++-|+.+.+
T Consensus 41 DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSYKL~tRSGNE~eF~dMV~RCN~VGVRiyV 113 (504)
T KOG2212|consen 41 DIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSYKLCTRSGNEDEFRDMVTRCNNVGVRIYV 113 (504)
T ss_pred HHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceEEeeccCCCHHHHHHHHHHhhccceEEEe
Confidence 5667888888763 2333 334455555 55767776544 5566788999999999999999988754
No 65
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.83 E-value=85 Score=31.90 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHhhhCCCeEEEe--CCCCC
Q 011827 124 RTTNEVSQILKYCNSRLLAVVPQ--GGNTG 151 (476)
Q Consensus 124 ~s~~eV~~iv~~a~~~~~~v~~~--GgGt~ 151 (476)
-|.+|+.+++++|+++|+.|+|- -=||.
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 58999999999999999999883 33454
No 66
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.58 E-value=84 Score=32.46 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHhhhCCCeEEEe
Q 011827 125 TTNEVSQILKYCNSRLLAVVPQ 146 (476)
Q Consensus 125 s~~eV~~iv~~a~~~~~~v~~~ 146 (476)
|.+|+++|+++|+++|+.|+|-
T Consensus 84 T~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999883
No 67
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=21.06 E-value=1.4e+02 Score=27.40 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=27.4
Q ss_pred CCCc-cEEEecCCHHHHHHHHHHhhh--CCCeEEEeCC
Q 011827 114 RGSS-KLLLQPRTTNEVSQILKYCNS--RLLAVVPQGG 148 (476)
Q Consensus 114 ~~~p-~~vv~P~s~~eV~~iv~~a~~--~~~~v~~~Gg 148 (476)
...| ..|+.|.+.+|+..+++++-+ .+-|+.++-.
T Consensus 134 ~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 134 RSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred ccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 3345 568999999999999999998 5678887754
No 68
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=20.90 E-value=89 Score=32.19 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhhhCCCeEEEe--CCCCCC
Q 011827 125 TTNEVSQILKYCNSRLLAVVPQ--GGNTGL 152 (476)
Q Consensus 125 s~~eV~~iv~~a~~~~~~v~~~--GgGt~~ 152 (476)
|.+|+++||++|+++++.|+|- .=||..
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID~PGH~~ 97 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEIDTPGHTG 97 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccCchhhH
Confidence 8999999999999999999883 335543
No 69
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=20.89 E-value=1.6e+02 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=28.9
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhhCCCeE
Q 011827 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV 143 (476)
Q Consensus 112 ~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v 143 (476)
...|.+..|+...+++|+.++.+.|.+.+++.
T Consensus 45 ~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~ 76 (115)
T cd02407 45 ELEGQKKVVLKVPSEEELLELAKKAKELGLPH 76 (115)
T ss_pred HhCCCcEEEEECCCHHHHHHHHHHHHHcCCCe
Confidence 56788999999999999999999999988873
Done!