Query 011827
Match_columns 476
No_of_seqs 372 out of 2543
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pm9_A Putative oxidoreductase 100.0 1.8E-68 6.2E-73 566.0 41.2 388 77-467 12-402 (476)
2 1f0x_A DLDH, D-lactate dehydro 100.0 2.1E-56 7.1E-61 481.3 19.9 378 80-467 10-503 (571)
3 4bby_A Alkyldihydroxyacetoneph 100.0 9.9E-54 3.4E-58 470.0 41.5 377 77-463 159-579 (658)
4 2uuu_A Alkyldihydroxyacetoneph 100.0 5.8E-53 2E-57 456.9 33.6 376 78-465 90-510 (584)
5 1e8g_A Vanillyl-alcohol oxidas 100.0 3.5E-53 1.2E-57 457.9 31.2 381 81-470 23-478 (560)
6 1wvf_A 4-cresol dehydrogenase 100.0 2.2E-51 7.6E-56 440.5 33.5 382 81-470 19-447 (520)
7 2exr_A Cytokinin dehydrogenase 100.0 9E-51 3.1E-55 435.7 15.2 364 77-470 25-420 (524)
8 1w1o_A Cytokinin dehydrogenase 100.0 6E-47 2E-51 407.4 24.8 376 78-467 30-459 (534)
9 3tsh_A Pollen allergen PHL P 4 100.0 1.4E-36 4.9E-41 324.2 20.5 230 80-316 9-249 (500)
10 3rja_A Carbohydrate oxidase; p 100.0 1.2E-34 4E-39 307.0 22.1 224 84-315 5-232 (473)
11 2bvf_A 6-hydroxy-D-nicotine ox 100.0 1.8E-34 6.1E-39 304.9 20.5 212 98-318 20-235 (459)
12 3vte_A Tetrahydrocannabinolic 100.0 8.1E-34 2.8E-38 302.6 21.2 231 81-318 6-251 (518)
13 4feh_A Oxidoreductase DPRE1; a 100.0 1.3E-33 4.6E-38 299.1 21.6 218 105-331 32-252 (481)
14 3fw9_A Reticuline oxidase; BI- 100.0 7.7E-34 2.6E-38 301.8 19.7 202 107-317 36-242 (495)
15 1zr6_A Glucooligosaccharide ox 100.0 7.4E-34 2.5E-38 303.3 19.5 222 83-313 6-233 (503)
16 2wdx_A Putative hexose oxidase 100.0 1.9E-33 6.3E-38 301.3 21.3 206 95-303 35-257 (523)
17 2vfr_A Xylitol oxidase, aldito 100.0 7.5E-34 2.6E-38 297.1 17.3 210 107-335 11-221 (422)
18 2ipi_A Aclacinomycin oxidoredu 100.0 3.1E-33 1.1E-37 299.5 22.0 201 91-294 29-245 (521)
19 3pop_A GILR oxidase; FAD bindi 100.0 6.3E-33 2.2E-37 295.3 19.7 197 88-289 6-208 (501)
20 1hsk_A UDP-N-acetylenolpyruvoy 100.0 6.4E-35 2.2E-39 295.0 3.1 194 78-295 14-213 (326)
21 2y3s_A TAML; oxidoreductase; H 100.0 2.9E-32 1E-36 292.3 22.9 197 95-294 37-249 (530)
22 3js8_A Cholesterol oxidase; ch 100.0 2.8E-30 9.5E-35 274.7 17.9 194 106-311 19-235 (540)
23 2i0k_A Oxidoreductase; MIX alp 100.0 3E-30 1E-34 278.6 17.2 202 100-312 19-240 (561)
24 3tx1_A UDP-N-acetylenolpyruvoy 100.0 1.3E-30 4.5E-35 262.4 12.8 197 77-294 19-217 (322)
25 3i99_A UDP-N-acetylenolpyruvoy 99.9 4.3E-26 1.5E-30 232.0 17.3 198 100-319 17-229 (357)
26 1uxy_A MURB, uridine diphospho 99.9 1.2E-25 4.1E-30 227.8 19.7 196 102-318 3-213 (340)
27 2gqt_A UDP-N-acetylenolpyruvyl 99.9 6.8E-25 2.3E-29 215.1 10.4 176 101-317 10-188 (268)
28 2yvs_A Glycolate oxidase subun 99.9 6.5E-24 2.2E-28 202.4 11.2 128 175-307 2-129 (219)
29 1ffv_C CUTM, flavoprotein of c 98.6 9.2E-08 3.2E-12 94.5 9.5 155 117-292 5-177 (287)
30 2w3s_A Xanthine dehydrogenase; 97.9 5.4E-06 1.9E-10 86.9 3.9 154 115-291 175-345 (462)
31 1n62_C Carbon monoxide dehydro 97.8 2.3E-05 7.8E-10 77.3 6.6 150 117-291 5-176 (288)
32 3nvz_B Xanthine dehydrogenase/ 97.7 7.8E-05 2.7E-09 74.0 8.3 129 113-251 6-157 (305)
33 1t3q_C Quinoline 2-oxidoreduct 97.2 0.0004 1.4E-08 68.4 6.0 153 117-291 5-175 (288)
34 3hrd_C Nicotinate dehydrogenas 96.4 0.00092 3.1E-08 66.0 2.0 105 118-225 4-119 (296)
35 1rm6_B 4-hydroxybenzoyl-COA re 94.7 0.012 4E-07 58.8 2.3 98 118-223 7-118 (324)
36 3unc_A Xanthine dehydrogenase/ 93.7 0.095 3.3E-06 61.5 7.6 108 114-225 230-356 (1332)
37 3zyv_A AOH1; oxidoreductase, m 84.6 0.47 1.6E-05 55.8 3.4 104 117-224 240-362 (1335)
38 2vfr_A Xylitol oxidase, aldito 76.4 1.2 4.2E-05 45.5 2.8 43 419-461 290-337 (422)
39 1xty_A PTH, peptidyl-tRNA hydr 45.1 38 0.0013 28.1 5.8 45 103-149 43-88 (120)
40 1rzw_A Protein AF2095(GR4); be 43.3 31 0.0011 28.9 5.0 43 106-150 40-83 (123)
41 1wn2_A Peptidyl-tRNA hydrolase 33.3 64 0.0022 26.8 5.4 42 106-149 47-89 (121)
42 2dnh_A Bruno-like 5, RNA bindi 32.3 79 0.0027 24.4 5.6 47 266-316 30-76 (105)
43 3ulh_A THO complex subunit 4; 31.5 77 0.0026 24.5 5.5 47 266-316 44-90 (107)
44 2do4_A Squamous cell carcinoma 31.4 83 0.0029 24.0 5.6 47 266-316 32-78 (100)
45 4fxv_A ELAV-like protein 1; RN 31.3 1.1E+02 0.0036 23.8 6.2 64 248-316 17-81 (99)
46 3s8s_A Histone-lysine N-methyl 28.6 95 0.0032 24.7 5.6 47 266-316 21-68 (110)
47 1rlk_A Hypothetical protein TA 28.3 52 0.0018 27.1 3.9 39 112-150 47-86 (117)
48 2ywk_A Putative RNA-binding pr 27.9 81 0.0028 23.7 4.9 47 266-316 31-77 (95)
49 1jmt_A Splicing factor U2AF 35 27.8 87 0.003 24.7 5.2 40 277-316 49-88 (104)
50 2do0_A HnRNP M, heterogeneous 27.1 1E+02 0.0036 24.1 5.6 47 266-316 30-76 (114)
51 2pe8_A Splicing factor 45; RRM 25.8 95 0.0033 24.6 5.1 62 267-332 29-93 (105)
52 2zv3_A PTH, peptidyl-tRNA hydr 25.4 53 0.0018 27.0 3.4 38 112-149 45-83 (115)
53 1yht_A DSPB; beta barrel, hydr 24.4 46 0.0016 33.1 3.4 23 124-146 92-114 (367)
54 2cq3_A RNA-binding protein 9; 23.4 95 0.0032 23.9 4.6 46 266-316 30-75 (103)
55 2d9p_A Polyadenylate-binding p 23.1 1.4E+02 0.0048 22.8 5.5 46 266-316 30-75 (103)
56 1x5o_A RNA binding motif, sing 21.8 1.6E+02 0.0054 23.0 5.7 47 266-316 40-86 (114)
57 3md1_A Nuclear and cytoplasmic 21.4 1.5E+02 0.0052 21.4 5.2 47 266-316 16-63 (83)
58 2cqc_A Arginine/serine-rich sp 21.3 1.7E+02 0.0056 21.8 5.5 47 266-316 30-77 (95)
59 2dnr_A Synaptojanin-1; RRM dom 21.2 74 0.0025 25.1 3.3 40 268-314 28-67 (91)
60 2cpz_A CUG triplet repeat RNA- 21.0 81 0.0028 24.9 3.7 49 264-316 38-87 (115)
61 3beg_B Splicing factor, argini 20.6 1.3E+02 0.0043 23.9 4.9 44 263-316 28-71 (115)
62 1s79_A Lupus LA protein; RRM, 20.6 1.2E+02 0.0042 23.7 4.7 45 266-314 26-70 (103)
63 4f25_A Polyadenylate-binding p 20.3 1E+02 0.0035 24.5 4.2 48 264-316 18-65 (115)
No 1
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=100.00 E-value=1.8e-68 Score=566.00 Aligned_cols=388 Identities=39% Similarity=0.645 Sum_probs=355.8
Q ss_pred CCCHHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc
Q 011827 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (476)
Q Consensus 77 ~~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~ 156 (476)
.++++++++|++++|++.+++++..+..|++||+..+.+.|.+|++|+|++||+++|++|+++++|++++|||||+.|++
T Consensus 12 ~~~~~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgGt~~~g~~ 91 (476)
T 3pm9_A 12 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQ 91 (476)
T ss_dssp CCCHHHHHHHHHHHCGGGEECSHHHHHHHHBCTTCCCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEESSSCCSSSTT
T ss_pred cCCHHHHHHHHHhcCCCcEecCHHHHHHHhcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCc
Confidence 47788999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccc
Q 011827 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236 (476)
Q Consensus 157 ~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~ 236 (476)
.|..+||+|||++||+|+++|+++.+++||||++|.+|+++|.++|+.+|++|++...|||||++++|+||.++.+||.+
T Consensus 92 ~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~~~~yG~~ 171 (476)
T 3pm9_A 92 TPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLA 171 (476)
T ss_dssp CCCSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTTHHHHCCH
T ss_pred cCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCcccccCcH
Confidence 88777999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 237 ~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
+|+|+++++|++||++++++....|++.||||+++++||+|+|||||+++||++|.|+...+.++.|++++++.+++..+
T Consensus 172 ~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 172 RDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp HHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999998888899999999999999998
Q ss_pred HHHcCCceeEEEEeCHHHHHHHHHHhcCCCCCCCCCCcceEEEEeecCCchhhHHHHHHHHHHHHhcCCCeeeEEEecCH
Q 011827 317 KRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDI 396 (476)
Q Consensus 317 ~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~p~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~ 396 (476)
+...+..|+++|+||+.+++++.++ ++...|++.. .++++++|++|++ +...++++++++.+.+.+...+..++.++
T Consensus 252 ~~~~g~~p~a~El~d~~~~~~~~~~-~~~~~~~~~~-~~~~llve~~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~a~~~ 328 (476)
T 3pm9_A 252 QGEAAGNLTSFELIAETPLDFSVRH-ANNRDPLEAR-YPWYVLIELSSPR-DDARAALESILERGFEDGIVVDAAIANSV 328 (476)
T ss_dssp HHHHGGGEEEEEEEEHHHHHHHHHH-TTCCCCSSSC-CSEEEEEEEEESS-SCHHHHHHHHHHHHHHTTCCCEEEECCSH
T ss_pred HHhcCCCceEEEecCHHHHHHHHhc-cCCCCCCCcc-CCeEEEEEEccCc-HHHHHHHHHHHHHHHhcCCCcceEEeCCH
Confidence 7656778999999999999998776 3555565432 4689999999887 44566677887777776655677889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCcchHHHHHHHHHHHhhc--C-CEEEEeecCCCcEEEEeccCC
Q 011827 397 NQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGET--A-KVIGYGHLGDGNLHLNISAPR 467 (476)
Q Consensus 397 ~~~~~lw~~R~~~~~~~~~~g~~~~~D~~VP~~~l~~~~~~~~~~~~~~--g-~~~~~GH~gdGnlH~~i~~~~ 467 (476)
++.+++|++|+.+.++....|..+.+|++||+++++++++++++.++++ | .+..|||+||||+|++++++.
T Consensus 329 ~~~~~lW~~R~~~~~~~~~~g~~~~~Dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~~~gH~gdGnlH~~i~~~~ 402 (476)
T 3pm9_A 329 QQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPV 402 (476)
T ss_dssp HHHHHHHHHHHTHHHHTGGGCCEECCEEECCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCceeEEEEeeHHHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCceEEEEecCC
Confidence 9999999999999988887777788999999999999999999999999 6 688899999999999999864
No 2
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=100.00 E-value=2.1e-56 Score=481.31 Aligned_cols=378 Identities=18% Similarity=0.234 Sum_probs=313.5
Q ss_pred HHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccC
Q 011827 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (476)
Q Consensus 80 ~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~ 159 (476)
.+++++|++++|+.+|.+++..+..|++||+ .+.+.|.+|++|+|++||+++|++|+++++||+++||||++.|++.|.
T Consensus 10 ~~~~~~L~~~~g~~~v~~~~~~~~~y~~d~~-~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~G~~~~~ 88 (571)
T 1f0x_A 10 KAFLNELARLVGSSHLLTDPAKTARYRKGFR-SGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPN 88 (571)
T ss_dssp HHHHHHHHHHHCGGGEECCHHHHHHHHBCSS-SCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCC
T ss_pred HHHHHHHHHhcCCCeEEcCHHHHHHHhcccc-ccCCCccEEEeeCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCccCC
Confidence 4688999999998899999999999999996 678999999999999999999999999999999999999999999886
Q ss_pred CC-----eEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCC-CCccccccccCCCCCCCcccc
Q 011827 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (476)
Q Consensus 160 ~~-----gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~-~~~tvGG~va~nagG~~~~~y 233 (476)
.+ +|+|||++||+|+++|+ +.+|+||||++|.+|+++|.++|+.+|++||+. ..+||||++++|+||..+.+|
T Consensus 89 ~~~~~r~gvvIdl~rmn~I~~id~-~~~v~v~aGv~l~~L~~~l~~~Gl~~p~~~g~s~~~~tvGG~ia~nagG~~~~~y 167 (571)
T 1f0x_A 89 GNDYDRDVVIISTLRLDKLHVLGK-GEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRG 167 (571)
T ss_dssp BSCCSSCEEEEECTTCCCEEEETT-TTEEEECTTCBHHHHHHHHGGGTEECSCCCGGGGGTCBHHHHHHTTCCCSCTTSC
T ss_pred CcCCcCceEEEECcccCCceeECC-CCeEEEcCCcCHHHHHHHHHhcCccCCcCCCccCCCceecccccCCCCcccccCC
Confidence 53 89999999999988995 578999999999999999999999998888764 356999999999999999999
Q ss_pred ccccc----------------cEeEEEEEeCCCcEEEecCCcc------------cCCCCC-----------------cc
Q 011827 234 GSLHG----------------NVLGLEAVLANGDVIDMLGTLR------------KDNTGY-----------------DL 268 (476)
Q Consensus 234 G~~~d----------------~V~~~evV~~dG~iv~~~~~~~------------k~~~g~-----------------dL 268 (476)
|.++| +|+++++|++||++++++.... |+++|| ||
T Consensus 168 G~~~d~~~~~~~~~~~~l~~~~vl~levVl~dG~i~~~~~~~~~~~~~~~~~~~~k~~~Gy~~~~~~~d~~~p~~~~~Dl 247 (571)
T 1f0x_A 168 PAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADP 247 (571)
T ss_dssp SSCCSCEEEEEECTTSCEEEEECSSBCCCSSHHHHHHHHHTTCCCGGGBCCCSCCSSCTTHHHHHHCTTCSSCSCCTTCG
T ss_pred CchhhhhhhheeccCCceEEEEeeeEEEEcCCCcEEEecCccccccchhhhcccccccCCcccccccccccccccccccH
Confidence 99999 9999999999999998875433 688899 99
Q ss_pred hhhh--hcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHHHcCCceeEEEEeCHHHHHHHHHH-----
Q 011827 269 KHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTY----- 341 (476)
Q Consensus 269 ~~~~--~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~----- 341 (476)
++++ +||+|+||| |+++||++|.|+...++++.|++++++.+++..+....+..|+++|+||+..++++.++
T Consensus 248 ~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~ 326 (571)
T 1f0x_A 248 DRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTF 326 (571)
T ss_dssp GGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCSSCCSEEEEEEHHHHHHHC-------
T ss_pred HHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHhccccc
Confidence 9999 999999999 99999999999988888999999999999999987556778899999999988887554
Q ss_pred -----hcCCCC-----------------CC-C--------------------------CCCcceEEEEeecCCchhhHHH
Q 011827 342 -----LEGVRN-----------------PF-S--------------------------SSMHNFYVLIETTGSEESYDRE 372 (476)
Q Consensus 342 -----~~~~~~-----------------p~-~--------------------------~~~~~~~llie~~g~~~~~~~~ 372 (476)
...... |+ + ....++++++|+.|.+.+...+
T Consensus 327 ~~i~~~~~~~~p~~~~~k~~~~~~~~~~p~l~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~llve~~g~~~~~~~~ 406 (571)
T 1f0x_A 327 LMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKS 406 (571)
T ss_dssp --------------------------------------------------CCHHHHHHHHHCSEEEEEEECTTHHHHHHH
T ss_pred ccccccCcccccchhcccchhhhhhcccccccccchhhhhhhhhhccccccchhhhcccccCceEEEEEEecCcHHHHHH
Confidence 111111 11 0 0014578999999988766666
Q ss_pred HHHHHHHHHhcCCCeeeEEEecCHHHHHHHHHHHHHHHHHHHh--------cCCceEEEEEEcCcchHHHHHHHHHHHhh
Q 011827 373 KLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMK--------AGAVYKYDLSLPVEKMYDLVEKMRQRLGE 444 (476)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lw~~R~~~~~~~~~--------~g~~~~~D~~VP~~~l~~~~~~~~~~~~~ 444 (476)
+++++++.. .+. .+..++++.+..|..|+....++.. .|..+.+|++||+++++++ +.+++.+++
T Consensus 407 ~l~~~~~~~--~g~----~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g~~~~~Dvavp~~~l~~~-~~~~~~l~~ 479 (571)
T 1f0x_A 407 WLVDYFKQA--EGD----FFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWY-EHLPPEIDS 479 (571)
T ss_dssp HHHHHHHHS--SCE----EEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEEEEEEEEEECCTTCSCCS-CCCCHHHHT
T ss_pred HHHHHHHHc--CCC----eeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcCCceEEEEEecHHHhHHH-HHHHHHHHh
Confidence 667666544 232 2222566667777777765533221 2234789999999999999 999999988
Q ss_pred cC-CEEEEeecCCCcEEEEeccCC
Q 011827 445 TA-KVIGYGHLGDGNLHLNISAPR 467 (476)
Q Consensus 445 ~g-~~~~~GH~gdGnlH~~i~~~~ 467 (476)
++ ....|||+||||+|++++.+.
T Consensus 480 ~~~~~~~~GH~g~g~~H~~~~~~~ 503 (571)
T 1f0x_A 480 QLVHKLYYGHFMCYVFHQDYIVKK 503 (571)
T ss_dssp TEEEEEEEEETTTTEEEEEEEEET
T ss_pred hCccceeEEEEcCCceEEeeecCC
Confidence 86 667899999999999988643
No 3
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=100.00 E-value=9.9e-54 Score=470.03 Aligned_cols=377 Identities=19% Similarity=0.228 Sum_probs=294.5
Q ss_pred CCCHHHHHHHHhhhCCCcEEeChhHHHhhccc---------cccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeC
Q 011827 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANED---------WMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG 147 (476)
Q Consensus 77 ~~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d---------~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~G 147 (476)
.++++++++|+++++. ..++.++...++++ |...|...|++||+|+|++||+++|++|+++++||+|+|
T Consensus 159 ~~~~~~~~~l~~~~~~--~~~~~~~r~~h~~g~s~~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~~~ipVvprG 236 (658)
T 4bby_A 159 IVNEDFLHELKKTNIS--YSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIG 236 (658)
T ss_dssp CCCHHHHHHHHHHTCE--EECCHHHHHHTSCCSCHHHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCHHHHHHHHHhccc--ccCchHHHhhhcCCCCHHHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 4678899999999875 45666666555543 445778889999999999999999999999999999999
Q ss_pred CCCCCCCCcccC----CCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccC
Q 011827 148 GNTGLVGGSVPV----FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVST 223 (476)
Q Consensus 148 gGt~~~g~~~~~----~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~ 223 (476)
||||+.|+..+. .++|+|||++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++.+.|||||++++
T Consensus 237 gGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVeaGv~~~~L~~~L~~~Gl~lp~dP~S~~~aTIGG~iAt 316 (658)
T 4bby_A 237 GGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST 316 (658)
T ss_dssp SCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHHTEECCCCCTTTTTCBHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEecCchHHHHHHHHHHcCCccCCCCCCccccEEeehhhc
Confidence 999999887753 3469999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeec
Q 011827 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC 303 (476)
Q Consensus 224 nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~ 303 (476)
|++|.++.+||.++|+|+++|||+|||++++.+ ...|+++||||+++|+||+|||||||+++||++|+|+...+.++.|
T Consensus 317 na~G~~s~rYG~~~d~VlgleVVlpdG~i~~~~-~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f 395 (658)
T 4bby_A 317 RASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSC-QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAF 395 (658)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEEECSC-CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCCCCccCcCCHHHheeeEEEEeCCCcccccc-cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCcccccccccc
Confidence 999999999999999999999999999988754 4578999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCceeEEEEeCHHHHHHHHHHhcCCCCCCCC---C--------------CcceEEEEeecCCc
Q 011827 304 KDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSS---S--------------MHNFYVLIETTGSE 366 (476)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~p~~~---~--------------~~~~~llie~~g~~ 366 (476)
++++++.+++.++.+ .+..|+++|+||...++....+.+....++.. . .....+.+.+.+..
T Consensus 396 ~d~~~a~~av~~i~~-~~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~eg~~ 474 (658)
T 4bby_A 396 PNFEQGVACLREIAK-QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDR 474 (658)
T ss_dssp SSHHHHHHHHHHHHH-TTCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEEEEEEEECH
T ss_pred CCchhhhhhHHHHHH-cCCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHHHHHhcccH
Confidence 999999999998865 36678999999998888776554322211110 0 01112223333332
Q ss_pred hhhHHHHHHHHHHHHhcCCCeeeEEEecCHHHHHHHHHHHHHHHHHH---HhcC-CceEEEEEEcCcchHHHHHHHHHHH
Q 011827 367 ESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEAL---MKAG-AVYKYDLSLPVEKMYDLVEKMRQRL 442 (476)
Q Consensus 367 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lw~~R~~~~~~~---~~~g-~~~~~D~~VP~~~l~~~~~~~~~~~ 442 (476)
+ ...+..+.+.+.....+. +....+..+..|.+|....... ...+ ....+|++||+++++++++.+.+.+
T Consensus 475 ~-~v~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l 548 (658)
T 4bby_A 475 E-KVLQHEKQVYDIAAKFGG-----LAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERI 548 (658)
T ss_dssp H-HHHHHHHHHHHHHHTTTC-----EECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhhCc-----chhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHH
Confidence 2 223333344443433332 2334445555555555443221 1222 2346899999999999999988877
Q ss_pred hhc----C------CEEEEeecCCCcEEEEe
Q 011827 443 GET----A------KVIGYGHLGDGNLHLNI 463 (476)
Q Consensus 443 ~~~----g------~~~~~GH~gdGnlH~~i 463 (476)
.+. + ....++|++|||.|+.+
T Consensus 549 ~~~~~~~g~~~~~~~~~~~~h~~dg~~~l~~ 579 (658)
T 4bby_A 549 RRECKEKGVQFPPLSTCRVTQTYDAGACIYF 579 (658)
T ss_dssp HHHHHHTTCSSCCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHhcCccccccceEEEEEEeccCceEEE
Confidence 765 2 34568999999966543
No 4
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=5.8e-53 Score=456.89 Aligned_cols=376 Identities=16% Similarity=0.242 Sum_probs=300.8
Q ss_pred CCHHHHHHHHhhh-CCCcEEeChhHHHhhccc-----ccc----ccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeC
Q 011827 78 LNSEDVSYFKELL-GEKSVIQDEDVLLAANED-----WMR----KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG 147 (476)
Q Consensus 78 ~~~~~~~~L~~il-g~~~v~~~~~~l~~y~~d-----~~~----~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~G 147 (476)
++++++++|++++ | ++|.+++..+..|++| |.. .+...|.+|++|+|++||+++|++|+++++||+++|
T Consensus 90 ~~~~~~~~L~~~l~g-~~v~~~~~~~~~y~~d~~~~~~~~~~~g~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~pv~~~G 168 (584)
T 2uuu_A 90 QYPEFVRELKAFFLP-DQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMG 168 (584)
T ss_dssp CCHHHHHHHHTTSCG-GGEECSHHHHHHTTCCSSHHHHHHHHTTCCCCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEES
T ss_pred CCHHHHHHHHhhcCC-CeEEECHHHHHHhccCCchhhhhhhccCccCCCCCEEEeCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 5678899999999 8 8899999888888753 221 245689999999999999999999999999999999
Q ss_pred CCCCCCCCcccC---CCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCC
Q 011827 148 GNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTN 224 (476)
Q Consensus 148 gGt~~~g~~~~~---~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~n 224 (476)
||||+.|++.|. .++|+|||++||+|+++|+++.+++||||++|.+|+++|.++|+.++++|++.+.+||||++++|
T Consensus 169 gGts~~gg~~~~~~~~g~vvidl~~mn~I~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~n 248 (584)
T 2uuu_A 169 GGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATC 248 (584)
T ss_dssp SCCCSSCTTSCCCCSSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHHT
T ss_pred CCCCCCCCCcccCCCCCEEEEECCCCCccEEEcCCCCEEEECCCCcHHHHHHHHHHcCCeeCcCCCccCCeeEeeeccCC
Confidence 999999988875 46799999999999999999999999999999999999999999999999988889999999999
Q ss_pred CCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecC
Q 011827 225 AGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK 304 (476)
Q Consensus 225 agG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~ 304 (476)
++|..+.+||.++|+|+++|||++||++++. ...+++.||||+++++||+|+|||||+++||++|.|+...+..+.|+
T Consensus 249 a~G~~~~~yG~~~d~V~~levVl~dG~i~~~--~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~ 326 (584)
T 2uuu_A 249 SSGHQSDKYGDIEDMAVSFRTVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFP 326 (584)
T ss_dssp CCCTTHHHHCCHHHHEEEEEEEETTEEECCC---------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEES
T ss_pred CCcccccCcCcHHHheeeEEEEeCCCCEEEC--CccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcC
Confidence 9999999999999999999999999997642 23467799999999999999999999999999999998888888999
Q ss_pred CHHHHHHHHHHHHHHcCCceeEEEEeCHHHHHHHHHHhcC--CC---------------CCCCCCCcceEEEEeecCCch
Q 011827 305 DYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEG--VR---------------NPFSSSMHNFYVLIETTGSEE 367 (476)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~--~~---------------~p~~~~~~~~~llie~~g~~~ 367 (476)
+++++.+++.++.. .+..|+++|+||...+.+.....+. .. .+++.. ..+++++|+.|+.
T Consensus 327 ~~~~a~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~llve~~g~~- 403 (584)
T 2uuu_A 327 TFAHAVSALQQIRS-SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFK-NVCLSIIGFEGPK- 403 (584)
T ss_dssp SHHHHHHHHHHHHH-HTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTT-TCEEEEEEEEECH-
T ss_pred CHHHHHHHHHHHHh-cCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCC-ccEEEEEEEecCh-
Confidence 99999999998865 3667899999998866643221110 00 123222 4678999999975
Q ss_pred hhHHHHHHHHHHHHhcCCCeeeEEEecCHHHHHHHHHHHHHHHHHHHh----cCC-ceEEEEEEcCcchHHHHHHHHHH-
Q 011827 368 SYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIAEALMK----AGA-VYKYDLSLPVEKMYDLVEKMRQR- 441 (476)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lw~~R~~~~~~~~~----~g~-~~~~D~~VP~~~l~~~~~~~~~~- 441 (476)
+..+++++.+.+.+.+.+... .. ++..++|+.|+...+.+.. .|. ...+|++||+++++++++.+++.
T Consensus 404 ~~v~~~~~~~~~~~~~~g~~~---~~---~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~l 477 (584)
T 2uuu_A 404 KVVDFHRTSVFDILSKNAAFG---LG---SAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTF 477 (584)
T ss_dssp HHHHHHHHHHHHHHHTTTCEE---EE---EESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcc---ch---HHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHHH
Confidence 445566777777776665432 11 1446799988876665543 232 35689999999999999998888
Q ss_pred ---HhhcC-CEEEEee---cCCCc--EEEEecc
Q 011827 442 ---LGETA-KVIGYGH---LGDGN--LHLNISA 465 (476)
Q Consensus 442 ---~~~~g-~~~~~GH---~gdGn--lH~~i~~ 465 (476)
+.++| .+..||| +|||| +|+++.+
T Consensus 478 ~~~~~~~g~~~~~~~h~gH~gd~G~~~~~~~~~ 510 (584)
T 2uuu_A 478 VKHFKDQGIPAWICAHISHTYTNGVCLYFIFAS 510 (584)
T ss_dssp HHHHHTTTCCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HhHHHhcCCeeEEEEEEEeecCCCcEEEEEecc
Confidence 67777 5555555 56754 4554543
No 5
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=100.00 E-value=3.5e-53 Score=457.89 Aligned_cols=381 Identities=18% Similarity=0.181 Sum_probs=301.0
Q ss_pred HHHHHHHhhhCCCcEEeChhHHHh----hccc------ccc--ccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCC
Q 011827 81 EDVSYFKELLGEKSVIQDEDVLLA----ANED------WMR--KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGG 148 (476)
Q Consensus 81 ~~~~~L~~ilg~~~v~~~~~~l~~----y~~d------~~~--~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~Gg 148 (476)
+++++|++++|+++|.+++..+.. |++| |+. .+++.|.+|++|+|++||+++|++|+++++||+++|+
T Consensus 23 ~~~~~L~~~~g~~~v~~d~~~~~~~~~~y~~d~~~~d~~~~~~~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~pv~~~g~ 102 (560)
T 1e8g_A 23 EFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISI 102 (560)
T ss_dssp HHHHHHHHHHCGGGEEECC-----CCBCSSSBCSSSCSSCCSCTTSSCCSEEECCSSHHHHHHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHhhCcccEecCHHHhhhhhhhhccccccccccccccccccCCcEEEeCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 468999999999999999999998 8877 554 4678899999999999999999999999999999999
Q ss_pred CCCCC-CCccc-CCCeEEEEc-CCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCC--cccCCCCCCCccccccccC
Q 011827 149 NTGLV-GGSVP-VFDEVIINM-GSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI--MPLDLGAKGSCQIGGNVST 223 (476)
Q Consensus 149 Gt~~~-g~~~~-~~~gvvIdl-~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~--l~~~~g~~~~~tvGG~va~ 223 (476)
||++. |+..| ..+||+||| ++||+|+++|+++.+++||||+++.+|+++|.++|+. ++++|++.+.+|+||++++
T Consensus 103 Gt~~~~gg~~p~~~~gvvidl~~~mn~il~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~tigG~~~~ 182 (560)
T 1e8g_A 103 GRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE 182 (560)
T ss_dssp CCCTTTTTTCCSSTTCEEEECTTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHHHHT
T ss_pred CCcCCcCCCCCCcCCEEEEEchHhcCCeEEEcCCCCEEEEeCCCCHHHHHHHHHHcCCccccCCCCCCCCccchhhhccC
Confidence 99997 77776 568999999 9999999999999999999999999999999999999 9888888888999999999
Q ss_pred CCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccC-------------------------CCCCcchhhhhcCCCC
Q 011827 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD-------------------------NTGYDLKHLFIGSEGS 278 (476)
Q Consensus 224 nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~-------------------------~~g~dL~~~~~Gs~G~ 278 (476)
|++|.. +||.++|+|++++||++||++++++....++ ..||||.+++. +|+
T Consensus 183 ~g~g~~--~yG~~~d~v~~l~vVl~dG~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~Gy~l~~L~~--~Gt 258 (560)
T 1e8g_A 183 RGVGYT--PYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFS--QSN 258 (560)
T ss_dssp TCBCSS--TTCBTGGGEEEEEEEETTSCEEECGGGGSCCCCCGGGTTCCGGGSCCCTTTTTCSCCSSCCCGGGGS--SSS
T ss_pred CCCCcc--cceeHHHheeeeEEEeCCCCEEEecCcccCcccccccccchhhhhhhhcccccccccCCcchhcccc--cCc
Confidence 998865 8999999999999999999999998654444 34889988886 579
Q ss_pred ceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHHH--HcCCceeEEEEeCHHHHHHHH-----HHhcCCCCCCCC
Q 011827 279 LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR--KLGEILSAFEFLDNQSMDLVL-----TYLEGVRNPFSS 351 (476)
Q Consensus 279 lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~E~~d~~~~~~~~-----~~~~~~~~p~~~ 351 (476)
|||||+++||++|.|+...++++.|++++++.+++..++. ..+..|+++|+||... +++. .+. ....+++.
T Consensus 259 lGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~p~~~el~d~~~-~~~~l~~~~~~~-~~~~~~p~ 336 (560)
T 1e8g_A 259 MGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILL-DAAVLGDKRSYS-SRTEPLSD 336 (560)
T ss_dssp SEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHTTSSCSCCEEEEHHH-HHHHHCCGGGTC-CCSSCCCH
T ss_pred EEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHHHHHHHHHcCCCcceeEEechHH-Hhhhhhhhhhhc-cCCCCCCH
Confidence 9999999999999999888888999999998777655432 2356789999999874 3221 111 10011221
Q ss_pred C----------CcceEEEEeecCCchhhHHHHHHHHHHHHhcCCCeeeEEEecCHHHHHHHHHHHHHHH---HHHHhc--
Q 011827 352 S----------MHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIA---EALMKA-- 416 (476)
Q Consensus 352 ~----------~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lw~~R~~~~---~~~~~~-- 416 (476)
. ...+++++|++|+. +..+++++.+.+.+.+.+. ....++.++++.+.+|. |+.+. +++...
T Consensus 337 ~~~~~l~~~~~~~~~~l~~e~~g~~-~~v~~~~~~i~~i~~~~~~-~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~ 413 (560)
T 1e8g_A 337 EELDKIAKQLNLGRWNFYGALYGPE-PIRRVLWETIKDAFSAIPG-VKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKW 413 (560)
T ss_dssp HHHHHHHHHHTCCSEEEEEEEESCH-HHHHHHHHHHHHHHTTSTT-CEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGG
T ss_pred HHHHHHHhhcCCCceEEEEEEeCCH-HHHHHHHHHHHHHHHhCCC-ceeeccccchhhhhHHH-HHhhcccCchhhhhcc
Confidence 1 02467899999954 4455555655555555443 33445555555567786 88765 332222
Q ss_pred ------CCceEEEEEEcC--cchHHHHHHHHHHHhhcC-CEEEEeecCCCcEEEEe--ccCCCch
Q 011827 417 ------GAVYKYDLSLPV--EKMYDLVEKMRQRLGETA-KVIGYGHLGDGNLHLNI--SAPRYDD 470 (476)
Q Consensus 417 ------g~~~~~D~~VP~--~~l~~~~~~~~~~~~~~g-~~~~~GH~gdGnlH~~i--~~~~~~~ 470 (476)
+....+|++||+ ++++++++.+++.++++| .+.+|||+||||+|+++ +++..++
T Consensus 414 ~~~~~~~~~~~~d~~vP~~~~~l~~~~~~~~~~~~~~g~~~~~~gH~gdGnlH~~i~~~~~~~~~ 478 (560)
T 1e8g_A 414 IDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDL 478 (560)
T ss_dssp GGGSTTEEEEEECBEECSSHHHHHHHHHHHHHHHHHHTCCCCEEEEECSSCEEEEEEEEEETTCH
T ss_pred ccccCCCceEEEeeecCCCHHHHHHHHHHHHHHHHHcCCceEEEEEecCCeEEEEecccCCCCCH
Confidence 224568999999 999999999999999998 88899999999999998 4555554
No 6
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=100.00 E-value=2.2e-51 Score=440.55 Aligned_cols=382 Identities=17% Similarity=0.189 Sum_probs=298.0
Q ss_pred HHHHHHHhhhCCCcEEeChhHHHhhccccccc--cCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCC-CCcc
Q 011827 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRK--YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-GGSV 157 (476)
Q Consensus 81 ~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~--~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~-g~~~ 157 (476)
.++++|++++|++.|.+++..+..|++||+.. +.+.|.+|++|+|++||+++|++|+++++||+++|+|||+. |++.
T Consensus 19 ~~~~~L~~~l~~~~v~~~~~~~~~y~~d~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~pv~~~g~G~~~~~g~~~ 98 (520)
T 1wvf_A 19 KAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAA 98 (520)
T ss_dssp HHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTS
T ss_pred HHHHHHHHhcCCCeEecCcHHHHHHhcccccccccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCC
Confidence 46789999999989999999999999998764 68889999999999999999999999999999999999997 7666
Q ss_pred c-CCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccC-CCCCCCccccccccCCCCCCCcccccc
Q 011827 158 P-VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLD-LGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (476)
Q Consensus 158 ~-~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~-~g~~~~~tvGG~va~nagG~~~~~yG~ 235 (476)
| ..+||+|||++||+|+++|+++.+++||||++|.+|+++|.++|+.++++ +++.+.+||||++++|++|.. +||.
T Consensus 99 ~~~~~gvvidl~~m~~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~igG~~~~~g~g~~--~yG~ 176 (520)
T 1wvf_A 99 PVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYT--PYGE 176 (520)
T ss_dssp CSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHTTCBCSS--TTCB
T ss_pred CCCCCeEEEECCCCCceEEECCCCCEEEECCCCCHHHHHHHHHHcCCcccCCCCCCCCeeeeeecccCCCcCCc--cccc
Confidence 5 46799999999999999999999999999999999999999999999877 334458999999999999875 8999
Q ss_pred ccccEeEEEEEeCCCcEEEecCCcccC---------CCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCH
Q 011827 236 LHGNVLGLEAVLANGDVIDMLGTLRKD---------NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDY 306 (476)
Q Consensus 236 ~~d~V~~~evV~~dG~iv~~~~~~~k~---------~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~ 306 (476)
++|+|+++|||++||++++++....++ ..||||.++|.| |+|||||+++||++|.|+...++.+.|+++
T Consensus 177 ~~d~v~~~evV~~dG~v~~~~~~~~~~~~l~~~~~~~~Gy~l~~l~~g--~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~ 254 (520)
T 1wvf_A 177 HFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQ--ANYGICTKMGFWLMPKPPVFKPFEVIFEDE 254 (520)
T ss_dssp GGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTT--SSSCEEEEEEEECEECCSEEEEEEEEECCG
T ss_pred hhhcEeeeEEEcCCCcEEEeCCCcCCCchhHhhhcCCCCcchhhhccC--CceEEEEEEEEEEEecCCeEEEEEEEeCCH
Confidence 999999999999999999987532222 357888888865 499999999999999999888888889998
Q ss_pred HHHHHHH---HHHHHHcCCceeEEEEeCHHHHHHHHHHhc-CC-C--CCCCCC----------CcceEEEEeecCCchhh
Q 011827 307 FSCQKLL---REAKRKLGEILSAFEFLDNQSMDLVLTYLE-GV-R--NPFSSS----------MHNFYVLIETTGSEESY 369 (476)
Q Consensus 307 ~~~~~~~---~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~-~~-~--~p~~~~----------~~~~~llie~~g~~~~~ 369 (476)
+++.+++ ..++. .+..|+++|+||...+..+....+ .. . .+++.. ...+.+++|+.|+. +.
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~ 332 (520)
T 1wvf_A 255 ADIVEIVDALRPLRM-SNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQ-EQ 332 (520)
T ss_dssp GGHHHHHHHHHHHHH-TTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHHHHHHHCCCSEEEEEEEEESH-HH
T ss_pred HHHHHHHHHHHHHHH-cCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHHHHHhcCCCceEEEEEEeCCH-HH
Confidence 8876644 44433 356689999999886555422000 00 0 011100 02457888898865 34
Q ss_pred HHHHHHHHHHHHhcCCCeeeEEEecCHHHHHHHHHHHHHHH---HHHHhc--------CCceEEEEEEcC--cchHHHHH
Q 011827 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIREGIA---EALMKA--------GAVYKYDLSLPV--EKMYDLVE 436 (476)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~lw~~R~~~~---~~~~~~--------g~~~~~D~~VP~--~~l~~~~~ 436 (476)
.++.++.+.+.+.+.+. .....+.++ +.+.+|++|+.+. +..... +..+.+|+++|. ++++++++
T Consensus 333 v~~~~~~i~~~~~~~~~-~~~~~~~~~-~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~l~~~~~ 410 (520)
T 1wvf_A 333 VDVNWKIVTDVFKKLGK-GRIVTQEEA-GDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAA 410 (520)
T ss_dssp HHHHHHHHHHHHHHHTC-CEEEEHHHH-TTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-eEEEecccc-hhhhHHHHHHHhhccCchhhhhccccccCCCceEEeccccCCCHHHHHHHHH
Confidence 44445554444444332 223333333 4567999998776 221221 224568999999 99999999
Q ss_pred HHHHHHhhcC-CEEEEeecCCCcEEEEe--ccCCCch
Q 011827 437 KMRQRLGETA-KVIGYGHLGDGNLHLNI--SAPRYDD 470 (476)
Q Consensus 437 ~~~~~~~~~g-~~~~~GH~gdGnlH~~i--~~~~~~~ 470 (476)
.+++.+++++ ...+|||+||||+|+++ .++..++
T Consensus 411 ~~~~~~~~~~~~~~~~gh~gdGnlH~~i~~~~~~~~~ 447 (520)
T 1wvf_A 411 MAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNP 447 (520)
T ss_dssp HHHHHHHHTTCCCCEEEEECSSEEEEEEEEEEETTCH
T ss_pred HHHHHHHHcCCCeeEeecccCcceeeeeccccCCCCH
Confidence 9999999998 78899999999999987 4544443
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=100.00 E-value=9e-51 Score=435.71 Aligned_cols=364 Identities=14% Similarity=0.170 Sum_probs=279.3
Q ss_pred CCCHHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhh-CCCeEEEeCCCCCCCCC
Q 011827 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS-RLLAVVPQGGNTGLVGG 155 (476)
Q Consensus 77 ~~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~-~~~~v~~~GgGt~~~g~ 155 (476)
.+.+.++++|+ + +++|.+++..+..|++||+..+.+.|.+|++|+|++||+++|++|++ +++||+++|||||+.|+
T Consensus 25 ~~~~~~~~~l~--~-~~~v~~d~~~~~~~~~d~~~~~~~~P~~vv~P~s~eeV~~iv~~a~~~~~~~v~~~GgGts~~g~ 101 (524)
T 2exr_A 25 KSTDGVSESLN--I-QGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQ 101 (524)
T ss_dssp ---------CC--C-SSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSSST
T ss_pred ccHHHHHHhcC--C-CCeEEeCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhhcCceEEEECCCcCCCCc
Confidence 34456667777 4 67799999999999999988889999999999999999999999995 99999999999999998
Q ss_pred cccCCCeEEEEcCCCCCeEEEeC-----CC--CEEEEecCccHHHHH-HHHHhCCCCcccCCCCCCCccccccccCCCCC
Q 011827 156 SVPVFDEVIINMGSMNNIITFDK-----GS--GVLVCEAGCILENLV-SFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (476)
Q Consensus 156 ~~~~~~gvvIdl~~ln~I~~id~-----~~--~~v~V~aGv~~~~L~-~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG 227 (476)
+.+. +||+|||++||+| ++|+ ++ .+++||||++|.++. ..++++|+. |+++++.+.|||||++++|++|
T Consensus 102 ~~~~-~gvvidl~~m~~i-~i~~~~~~~~~~~~~v~v~aGv~~~~l~~~~l~~~Gl~-~~~~~s~~~~tiGG~va~ng~G 178 (524)
T 2exr_A 102 AMAE-GGLVVDMSTTAEN-HFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLA-PRSWTDYLGLTVGGTLSNAGVS 178 (524)
T ss_dssp TCCT-TSEEEEGGGGTTS-CEEEEECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEE-CSCCCSCCSSBHHHHHTTCCCC
T ss_pred ccCC-CEEEEECcCCCCc-EEeecccCCCCCceEEEEeCCcCHHHHHHHHHHHcCCC-CCCCCcCCceeecccCCCCCCc
Confidence 8764 7999999999999 7877 55 799999999999974 556699998 7678877889999999999989
Q ss_pred CCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHH
Q 011827 228 LRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYF 307 (476)
Q Consensus 228 ~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~ 307 (476)
..+.+||.++|+|++++||++||++++++.. .++||+++++||+|+|||||+++||++|.|+...++.+.|++++
T Consensus 179 ~~~~~yG~~~d~V~~l~vV~~dG~v~~~~~~-----~~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~ 253 (524)
T 2exr_A 179 GQAFRYGPQTSNVTELDVVTGNGDVVTCSEI-----ENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFD 253 (524)
T ss_dssp TTHHHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHH
T ss_pred ccccccCcHhhhEEEEEEEecCCeEEEECCC-----CChhHHhHhhcCCCccEEEEEEEEEEEEcCCeeEEEEEEeCCHH
Confidence 9999999999999999999999999998864 57899999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHcCCceeEEEEeCHHHHHHH-------HH-HhcCC----CCCCCCCCcceEEEEee-----cCCchhhH
Q 011827 308 SCQKLLREAKRKLGEILSAFEFLDNQSMDLV-------LT-YLEGV----RNPFSSSMHNFYVLIET-----TGSEESYD 370 (476)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~-------~~-~~~~~----~~p~~~~~~~~~llie~-----~g~~~~~~ 370 (476)
++.+++..+... +.. +++|+||...+... .. +.... ...++.....+++++|+ +|.+.+.+
T Consensus 254 ~~~~~~~~l~~~-~~~-~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~llve~~~~~~~g~~~~~v 331 (524)
T 2exr_A 254 EFTQDAEWLVSQ-KNE-SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTI 331 (524)
T ss_dssp HHHHHHHHHHTS-CTT-SSCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCGGGSCTTCCSEEEEEEEEEEECTTSCHHHH
T ss_pred HHHHHHHHHHHc-CCc-chhHhhchhhhhcchhhhhhhhhcccccccccchhcCCcccccEEEEEEEEeecCCCCCHHHH
Confidence 999988887542 333 46777775322111 00 00000 01122111357889999 78777777
Q ss_pred HHHHHHHHHHHhcCCCeeeEE------EecCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCcchHHHHHHHHHHHhh
Q 011827 371 REKLEAFLLSSMEGGLISDGV------IAQDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMRQRLGE 444 (476)
Q Consensus 371 ~~~l~~~~~~~~~~~~~~~~~------~~~d~~~~~~lw~~R~~~~~~~~~~g~~~~~D~~VP~~~l~~~~~~~~~~~~~ 444 (476)
+++++.+.+.+...+...... ++.+..+. .|+.|+.....+.. .+ .|++||+++++++++.+.+
T Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~W~~R~~~~~a~~~---~~-~Dv~VP~s~l~~~~~~v~~---- 401 (524)
T 2exr_A 332 DKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRS--EEIAKENGTWETPH---PW-LNLFVSKRDIGDFNRTVFK---- 401 (524)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHH--HHHHHHTTCSSSCC---CC-EEEEEEHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhH--HHHhhhhcccccCC---Ce-eEEEECHHHHHHHHHHHHH----
Confidence 777777776655444321110 23333332 39999866543321 23 5999999999998877644
Q ss_pred cCCEEEEeecCCCcEEEEeccCCCch
Q 011827 445 TAKVIGYGHLGDGNLHLNISAPRYDD 470 (476)
Q Consensus 445 ~g~~~~~GH~gdGnlH~~i~~~~~~~ 470 (476)
||+||||+|++++.+..++
T Consensus 402 -------~~~gdgn~h~~i~~~~~~~ 420 (524)
T 2exr_A 402 -------ELVKNGVNGPMLVYPLLRS 420 (524)
T ss_dssp -------CCTTTCCSSCEEEEEEEGG
T ss_pred -------HHhCCCCcceEEEEeCCch
Confidence 8999999999998754443
No 8
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=100.00 E-value=6e-47 Score=407.40 Aligned_cols=376 Identities=13% Similarity=0.127 Sum_probs=281.4
Q ss_pred CCHHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhh--C-CCeEEEeCCCCCCCC
Q 011827 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS--R-LLAVVPQGGNTGLVG 154 (476)
Q Consensus 78 ~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~--~-~~~v~~~GgGt~~~g 154 (476)
.+.+++++|+++..+..+.+++..+..|++||+..+.+.|.+|++|+|++||+++|++|++ + ++||+++|+|||+.|
T Consensus 30 ~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~~~v~~~G~G~~~~g 109 (534)
T 1w1o_A 30 RGRPWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMG 109 (534)
T ss_dssp ----------CTTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSS
T ss_pred chHHHHHHHHhcCCCceEecCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC
Confidence 3446778899966678899999999999999988889999999999999999999999997 6 999999999999998
Q ss_pred CcccCCCeEEEEcCCCCCe-----EEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCC
Q 011827 155 GSVPVFDEVIINMGSMNNI-----ITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR 229 (476)
Q Consensus 155 ~~~~~~~gvvIdl~~ln~I-----~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~ 229 (476)
++.+ .+|++|||++||+| +++|+++.+++||||++|.+|++++.++|+. ++++++...+||||++++|++|..
T Consensus 110 ~~~~-~~gvvi~l~~m~~i~~~~~~~~d~~~~~v~v~aGv~~~~l~~~~~~~Gl~-~~~~~~~~~~tvGG~v~~~g~g~~ 187 (534)
T 1w1o_A 110 QAFA-PGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVA-PRSWTDYLYLTVGGTLSNAGISGQ 187 (534)
T ss_dssp TTCC-TTSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEE-ESCCCSSCCSBHHHHHTTCCCSTT
T ss_pred CcCC-CCeEEEECccccccccCccEEEcCCCCEEEECCCcCHHHHHHHHHHCCCc-ccCCCCCCCEEeceeccCCCcccc
Confidence 8876 47999999999998 7999988999999999999999999999995 557777778999999999999999
Q ss_pred ccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHH
Q 011827 230 LVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSC 309 (476)
Q Consensus 230 ~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~ 309 (476)
+.+||.++|+|+++|||++||++++++.. .++||+|+++||+|+|||||+++||++|.|+...++.+.|++++++
T Consensus 188 ~~~yG~~~d~v~~~evV~~dG~v~~~~~~-----~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~ 262 (534)
T 1w1o_A 188 AFRHGPQISNVLEMDVITGHGEMVTCSKQ-----LNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAF 262 (534)
T ss_dssp HHHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHHHH
T ss_pred ccccccHhhhEEEEEEEeCCccEEEECCC-----CChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEEEEEeCCHHHH
Confidence 99999999999999999999999999865 6789999999999999999999999999999887788889999988
Q ss_pred HHHHHHHHHHcCC-----ceeEEEEeCHHHHH---HHHHHhcCC-CC---------CCCCCC-cceEEEEeec----CCc
Q 011827 310 QKLLREAKRKLGE-----ILSAFEFLDNQSMD---LVLTYLEGV-RN---------PFSSSM-HNFYVLIETT----GSE 366 (476)
Q Consensus 310 ~~~~~~~~~~~~~-----~~~a~E~~d~~~~~---~~~~~~~~~-~~---------p~~~~~-~~~~llie~~----g~~ 366 (476)
.+++..+... +. .++++|+||...+. .+..+ +.. .. +++... .+.++++|+. +.+
T Consensus 263 ~~~~~~~~~~-~~~~~~~~~~~~e~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ie~~~~~~g~~ 340 (534)
T 1w1o_A 263 SADQERLTAP-RPGGGGASFGPMSYVEGSVFVNQSLATDL-ANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNAT 340 (534)
T ss_dssp HHHHHHHHCB-C------CBCSCSEEEEEEEEGGGHHHHH-HTTSSSCHHHHHHHHHHHHHTTCSEEEEEEEEEEC----
T ss_pred HHHHHHHHhc-ccccccccccchhHhhhhhhccccccccc-ccccccCccccccccccccccccceEEEEEEEEecCCCc
Confidence 8887766432 33 46789999965432 12222 122 11 111000 2467788876 655
Q ss_pred h--hhHHHHHHHHHHHHhcCCCeeeEEEe-----cCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCcchHHHHHHHH
Q 011827 367 E--SYDREKLEAFLLSSMEGGLISDGVIA-----QDINQASSFWRIREGIAEALMKAGAVYKYDLSLPVEKMYDLVEKMR 439 (476)
Q Consensus 367 ~--~~~~~~l~~~~~~~~~~~~~~~~~~~-----~d~~~~~~lw~~R~~~~~~~~~~g~~~~~D~~VP~~~l~~~~~~~~ 439 (476)
. +..++.++.+++.+.+.+........ .+. ....+|+.|+....... ..+. |++||.++++++++++.
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~-~~~~~w~~r~~~~~~~~---~~~~-d~~vP~s~l~~~~~~~~ 415 (534)
T 1w1o_A 341 AAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDR-VHGEEVALNKLGLWRVP---HPWL-NMFVPRSRIADFDRGVF 415 (534)
T ss_dssp ---CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTH-HHHHHHHHHHTTCSSSC---CCCE-EEEEEGGGHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHhhcccCCcceeccchHHHHhhh-hhhhHHHHhhccccccC---Cccc-cEEecHHHHHhHHHHHH
Confidence 4 44556666666555443321111000 111 12356888875433221 1245 99999999999999887
Q ss_pred HHHhhcC----CEE---EEee---------cCCCcEEEEeccCC
Q 011827 440 QRLGETA----KVI---GYGH---------LGDGNLHLNISAPR 467 (476)
Q Consensus 440 ~~~~~~g----~~~---~~GH---------~gdGnlH~~i~~~~ 467 (476)
+.+.+.+ .+. .+|| .+|||+|+++....
T Consensus 416 ~~l~~~~~~~~~~~~~~~~gh~~~~~~s~v~~dgn~h~~v~~~~ 459 (534)
T 1w1o_A 416 KGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLF 459 (534)
T ss_dssp TTTTTTSCCCSCEEEEEEEGGGSCTTSSCCCCSSSEEEEEEECC
T ss_pred HHHhhccCCcccEEEeecccccccccccccCCCccEEEEEEEec
Confidence 7554442 122 2388 69999999887654
No 9
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=100.00 E-value=1.4e-36 Score=324.21 Aligned_cols=230 Identities=16% Similarity=0.201 Sum_probs=193.7
Q ss_pred HHHHHHHHhhhCCCcEEeChh-----HHHhhcc--ccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCC
Q 011827 80 SEDVSYFKELLGEKSVIQDED-----VLLAANE--DWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (476)
Q Consensus 80 ~~~~~~L~~ilg~~~v~~~~~-----~l~~y~~--d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~ 152 (476)
++++++|.+.++++.|++..+ .+..|.. .|+......|.+||+|+|++||+++|++|+++++||++|||||++
T Consensus 9 ~~f~~~L~~~~~~~~v~~~~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~p~~~~~v~~~v~~a~~~~~~~~~r~gGh~~ 88 (500)
T 3tsh_A 9 EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDY 88 (500)
T ss_dssp CHHHHHHHHHSCGGGEEETTSTTHHHHHHTTCCCTTTTSTTSCCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCT
T ss_pred HHHHHHHHhhCCCCEEECCCCCccHHHHHhhhccccccCCCCCCceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcCC
Confidence 468899999998888876532 2333322 377667788999999999999999999999999999999999998
Q ss_pred CCCc---ccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCC
Q 011827 153 VGGS---VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR 229 (476)
Q Consensus 153 ~g~~---~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~ 229 (476)
.|.+ .+.+++++|||++||+| ++|+++++++||||++|.+|+++|.++|+.+.+.+|+.+++++||.++++++|..
T Consensus 89 ~g~s~~~~~~~~~~~idl~~~~~v-~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~g~~ 167 (500)
T 3tsh_A 89 EGLSYRSLQPETFAVVDLNKMRAV-WVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGML 167 (500)
T ss_dssp TCTTTCCSSSCCEEEEECTTCCCE-EEETTTTEEEEETTSBHHHHHHHHHHHCTTEECCCCSSTTSBHHHHHHTCCCCTT
T ss_pred CCCcCCCCCcCCeEEEECcCCCCE-EECCCCCEEEEccCcCHHHHHHHHHHhCCCcccCCCCCCCceecCccccccCCcc
Confidence 7644 33467999999999998 8999999999999999999999999999888877899999999999999999999
Q ss_pred ccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhc-CCCCceEEEEEEEEccCCCCceeEEEeecCCHHH
Q 011827 230 LVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIG-SEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFS 308 (476)
Q Consensus 230 ~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~G-s~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~ 308 (476)
+.+||..+|+|+++|||++||+++... ..+.||||+++| ++|+|||||+++||++|.|+....+.+.+...+.
T Consensus 168 ~~~~G~~~d~v~~~~vV~a~G~i~~~~------~~~~dl~~a~~gg~gg~fGvvt~~~~~~~p~p~~~~~~~~~~~~~~~ 241 (500)
T 3tsh_A 168 LRKYGIAAENVIDVKLVDANGKLHDKK------SMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEG 241 (500)
T ss_dssp HHHHCCGGGGEEEEEEECTTSCEECHH------HHCHHHHHHHTTSCSSTTCEEEEEEEECEECCSCEEEEEEEEETTTT
T ss_pred ccccCChhhheeeEEEECCCceEEECC------CCChHHHHHHHhhcccceEEEEEEEEEEEeCCCeEEEEEEecCcHHH
Confidence 999999999999999999999987543 245699999995 5679999999999999999876555554444444
Q ss_pred HHHHHHHH
Q 011827 309 CQKLLREA 316 (476)
Q Consensus 309 ~~~~~~~~ 316 (476)
+.+++..+
T Consensus 242 ~~~~~~~~ 249 (500)
T 3tsh_A 242 AVDIINKW 249 (500)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 10
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=100.00 E-value=1.2e-34 Score=307.01 Aligned_cols=224 Identities=18% Similarity=0.220 Sum_probs=189.6
Q ss_pred HHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcc-cCCCe
Q 011827 84 SYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDE 162 (476)
Q Consensus 84 ~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~-~~~~g 162 (476)
+.|.+. +...+..++..+......|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.|.+. +..++
T Consensus 5 ~cl~~~-~~~v~~p~~~~y~~~~~~~n~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~ 83 (473)
T 3rja_A 5 ACLSAA-GVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGH 83 (473)
T ss_dssp HHHHHT-TCCBCCTTSHHHHHHTCCSBTTSCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCTTCGGGTSSSSC
T ss_pred HHHHhC-CCcEECCCCCchHHHHHHhhcccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCcccCCCCe
Confidence 444443 3344556667777778889888999999999999999999999999999999999999999986443 33568
Q ss_pred EEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCC-CCcccCCCCCCCccccccccCCCCCCCccccccccccEe
Q 011827 163 VIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHG-FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL 241 (476)
Q Consensus 163 vvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~G-l~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~ 241 (476)
|+|||++||+|.++|+++.+++||||++|.+|+++|.++| +.+| .|+++.++|||.+++|++|..+.+||.++|+|+
T Consensus 84 vvIdl~~~~~i~~vd~~~~~v~v~aG~~~~~l~~~l~~~G~~~~p--~G~~~~vgvgG~~~ggg~G~~~~~~G~~~D~v~ 161 (473)
T 3rja_A 84 LMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAIS--HGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVV 161 (473)
T ss_dssp EEEECTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHHHSEECC--CCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEE
T ss_pred EEEECCCCCceEEEcCCCCEEEECCCCCHHHHHHHHHHcCCEEec--cCCCCCcEeeeeccCCCCCcccccccchHhhee
Confidence 9999999999966999999999999999999999999999 7676 377788899999999999999999999999999
Q ss_pred EEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEee--cCCHHHHHHHHHH
Q 011827 242 GLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLA--CKDYFSCQKLLRE 315 (476)
Q Consensus 242 ~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~--~~~~~~~~~~~~~ 315 (476)
++|||++||++++++.+ .++||||+++|++|+|||||+++||++|.|+....+.+. +++.+++.+++..
T Consensus 162 ~~~vV~a~G~v~~~~~~-----~~~dLf~a~rG~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 232 (473)
T 3rja_A 162 GVTVVLADGRIVEASAT-----ENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEA 232 (473)
T ss_dssp EEEEECTTSCEEEEETT-----BSHHHHHHHHHHGGGTCEEEEEEEECEECCSCEEEEEEECCCCSHHHHHHHHHH
T ss_pred eEEEEecCCeEEEeCCC-----CCcchhhcccCCCCceEEEEEEEEEEEeCCCceEEEEEEecCccHHHHHHHHHH
Confidence 99999999999998765 578999999999999999999999999999765544433 3323344444443
No 11
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=100.00 E-value=1.8e-34 Score=304.92 Aligned_cols=212 Identities=19% Similarity=0.226 Sum_probs=184.0
Q ss_pred ChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEe
Q 011827 98 DEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD 177 (476)
Q Consensus 98 ~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id 177 (476)
++..+......|+..+.+.|.+|++|+|++||+++|++|+++++|+.++||||++.+.+. ..+|++|||++||+| ++|
T Consensus 20 ~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~-~~~gvvi~l~~l~~i-~~d 97 (459)
T 2bvf_A 20 DDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYAT-NDGGIVLDLRLMNSI-HID 97 (459)
T ss_dssp TSTTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTC-CSSSEEEECTTCCCE-EEE
T ss_pred CCccHHHHHHHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCccc-cCCeEEEECCCCCCE-EEC
Confidence 444555556788888899999999999999999999999999999999999999988764 367999999999999 899
Q ss_pred CCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecC
Q 011827 178 KGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLG 257 (476)
Q Consensus 178 ~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~ 257 (476)
+++.+++||||++|.+|+++|.++|+.+|. |....++|||++.++++|+.+.+||.++|+|+++|||++||++++++.
T Consensus 98 ~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~--g~~~~~gi~G~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~ 175 (459)
T 2bvf_A 98 TAGSRARIGGGVISGDLVKEAAKFGLAAVT--GMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSD 175 (459)
T ss_dssp TTTTEEEEETTCBHHHHHHHHHTTTEEECC--CSCTTSBHHHHHTTCCCCTTHHHHCCGGGGEEEEEEECTTSCEEEEES
T ss_pred CCCCEEEECCCCCHHHHHHHHHHcCCEecC--CCCCCcccceeecCCCCccccccccCHhHhEEEEEEEcCCCeEEEeCC
Confidence 999999999999999999999999999884 666778999999999999999999999999999999999999999886
Q ss_pred CcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecC--CHH--HHHHHHHHHHH
Q 011827 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK--DYF--SCQKLLREAKR 318 (476)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~--~~~--~~~~~~~~~~~ 318 (476)
. .++||||+++|++|+|||||+++||++|.|+......+.|+ +.+ ++++++.++..
T Consensus 176 ~-----~~~dLf~a~rg~~g~~GiVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (459)
T 2bvf_A 176 D-----ERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALN 235 (459)
T ss_dssp S-----SSHHHHHHHHHHGGGTCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred C-----CChhhHhHhhccCCccEEEEEEEEEEEECCCcEEEEEEEechHHhhHHHHHHHHHHHHH
Confidence 5 56899999999999999999999999999755444444444 345 55666655543
No 12
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=100.00 E-value=8.1e-34 Score=302.60 Aligned_cols=231 Identities=17% Similarity=0.253 Sum_probs=188.7
Q ss_pred HHHHHHHhhhC-----CCcEEe-ChhHHHhh------ccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCC
Q 011827 81 EDVSYFKELLG-----EKSVIQ-DEDVLLAA------NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGG 148 (476)
Q Consensus 81 ~~~~~L~~ilg-----~~~v~~-~~~~l~~y------~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~Gg 148 (476)
++++.|....+ ...|++ ++..+... +..|+......|.+|++|+|++||+++|++|+++++|+.++||
T Consensus 6 ~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrgg 85 (518)
T 3vte_A 6 NFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSG 85 (518)
T ss_dssp HHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESS
T ss_pred HHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEECC
Confidence 46666665544 233443 33333322 3357666678999999999999999999999999999999999
Q ss_pred CCCCCCCcc-cCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCC
Q 011827 149 NTGLVGGSV-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (476)
Q Consensus 149 Gt~~~g~~~-~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG 227 (476)
||++.|.+. +..+||+|||++||+| ++|+++.+++||||++|.+|+++|.++|+.+.+.+|.+++++|||.++++++|
T Consensus 86 Gh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G 164 (518)
T 3vte_A 86 GHDAEGMSYISQVPFVVVDLRNMHSI-KIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYG 164 (518)
T ss_dssp CCCTTCTTTCCSSSEEEEECTTCCCE-EEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCC
T ss_pred CcCCCCCccCCCCCeEEEECCCCcee-EEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCc
Confidence 999988764 3357999999999999 89999999999999999999999999865544447888899999999999999
Q ss_pred CCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcC-CCCceEEEEEEEEccCCCCceeEEEeecC-C
Q 011827 228 LRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHTPPKLSSVNLAFLACK-D 305 (476)
Q Consensus 228 ~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~~tl~l~p~p~~~~~~~~~~~-~ 305 (476)
..+.+||.++|+|++++||++||++++.. ..++||||+++|+ +|+|||||+++||++|.|+....+.+.+. +
T Consensus 165 ~~s~~~G~~~D~V~~~evV~adG~iv~~~------~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~ 238 (518)
T 3vte_A 165 ALMRNYGLAADNIIDAHLVNVDGKVLDRK------SMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME 238 (518)
T ss_dssp TTHHHHCCGGGGEEEEEEECTTCCEECHH------HHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCC
T ss_pred cccCCCCchhheEEEEEEEccCCeEEEee------ccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCC
Confidence 99999999999999999999999999531 2467999999998 89999999999999999986555444433 4
Q ss_pred HHHHHHHHHHHHH
Q 011827 306 YFSCQKLLREAKR 318 (476)
Q Consensus 306 ~~~~~~~~~~~~~ 318 (476)
.+++.+++..+++
T Consensus 239 ~~~~~~~l~~~~~ 251 (518)
T 3vte_A 239 IHGLVKLFNKWQN 251 (518)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666653
No 13
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=100.00 E-value=1.3e-33 Score=299.14 Aligned_cols=218 Identities=16% Similarity=0.233 Sum_probs=189.9
Q ss_pred hccccccccCCCccEEEecCCHHHHHHHHHHhhhC--CCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCE
Q 011827 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGV 182 (476)
Q Consensus 105 y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~--~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~ 182 (476)
+.++|. ++.+.|.+|++|+|++||+++|++|+++ ++|+.++|+|||+.+.+.+ .+|++|||++||+|+++|+++++
T Consensus 32 ~~~~W~-~~~~~p~~vv~P~s~eev~~~v~~a~~~~~~~~v~~~G~G~s~~~~~~~-~~gvvIdl~~l~~i~~~d~~~~~ 109 (481)
T 4feh_A 32 RLTGWG-RTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQN-GGGLVIDMTPLNTIHSIDADTKL 109 (481)
T ss_dssp EECCTT-CCSCEEEEEEECSCHHHHHHHHHHHHTTTCTTCEEEECSSCSSSSTTCC-TTSEEEECTTCCCEEEEETTTTE
T ss_pred eeeccc-CCCCCCCEEEeCCCHHHHHHHHHHHHHcCCCceEEEEeCCcCCCCCCCC-cCeEEEECccCCCceEEcCCCCE
Confidence 456884 5789999999999999999999999999 7999999999999776543 57999999999999999999999
Q ss_pred EEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccC
Q 011827 183 LVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (476)
Q Consensus 183 v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~ 262 (476)
|+||||+++.+|+++|.++|+.++..||+. .+||||+|++|+||.++.+||.++|+|+++++|++||++++++.+
T Consensus 110 v~v~aGv~l~~L~~~l~~~Gl~l~~~~g~~-~~tvGGaia~~a~G~~~~~~G~~~d~V~~~evV~~dG~v~~~s~~---- 184 (481)
T 4feh_A 110 VDIDAGVNLDQLMKAALPFGLWVPVLPGTR-QVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPT---- 184 (481)
T ss_dssp EEEETTCBHHHHHHHHGGGTEECSCCCSCS-CCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEECTTSCEEEECSS----
T ss_pred EEEcCCccHHHHHHHHHHcCCEEEEeCCcC-ccccCCccccccCCCCcccCCCccceEeEEEEEeCCCCEEEeCCC----
Confidence 999999999999999999999999888875 679999999999999889999999999999999999999999753
Q ss_pred CCCCcchhhhhcCCCCceEEEEEEEEccCCCCc-eeEEEeecCCHHHHHHHHHHHHHHcCCceeEEEEeC
Q 011827 263 NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSS-VNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLD 331 (476)
Q Consensus 263 ~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d 331 (476)
..++|||++++||.|++||||+++||+.|.|+. .....+.+.+++++.+.+.+.... . ....+-++|
T Consensus 185 ~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~w~d 252 (481)
T 4feh_A 185 GEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSDGSEA-R-YTYSSAWFD 252 (481)
T ss_dssp STTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEEECSSHHHHHHHHSSSGGG-G-CSEEEEEEC
T ss_pred CCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEEeCCCHHHHHHHHHHHHhc-C-CcEEEEEEe
Confidence 156899999999999999999999999999854 445567889999988887643221 1 123455665
No 14
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=100.00 E-value=7.7e-34 Score=301.82 Aligned_cols=202 Identities=18% Similarity=0.233 Sum_probs=177.1
Q ss_pred cccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccC-CCeEEEEcCCCCCeEEEeCCCCEEEE
Q 011827 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV-FDEVIINMGSMNNIITFDKGSGVLVC 185 (476)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~-~~gvvIdl~~ln~I~~id~~~~~v~V 185 (476)
..|.......|.+|++|+|++||+++|++|+++++||.++||||++.|.+.+. .+|++|||++||+| ++|+++.+++|
T Consensus 36 ~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrGgGh~~~g~~~~~~~ggvvIdl~~m~~i-~vd~~~~~v~V 114 (495)
T 3fw9_A 36 PLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRV-SIDLESETAWV 114 (495)
T ss_dssp GGGCSTTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESSCCCTTCTTSCCSSCEEEEECTTCCCE-EEETTTTEEEE
T ss_pred cccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCccccCCCCeEEEECCCCCcE-EEeCCCCEEEE
Confidence 46766677899999999999999999999999999999999999998887653 35899999999999 99999999999
Q ss_pred ecCccHHHHHHHHHhC--CCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCC
Q 011827 186 EAGCILENLVSFLDDH--GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDN 263 (476)
Q Consensus 186 ~aGv~~~~L~~~l~~~--Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~ 263 (476)
|||+++.+|+++|.++ |+.+| +|++++++|||.++++++|..+.+||.++|+|++++||++||++++ . +.
T Consensus 115 ~aG~~l~~l~~~l~~~g~gl~~~--~G~~~~vgigG~~~gGg~G~~~~~~G~~~D~v~~~~vV~adG~i~~-~-----~~ 186 (495)
T 3fw9_A 115 ESGSTLGELYYAITESSSKLGFT--AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD-R-----QA 186 (495)
T ss_dssp ETTCBHHHHHHHHHHHCSSEECC--CCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEEC-H-----HH
T ss_pred cCCCCHHHHHHHHHHhcCCceec--cCCCCCCeEeeeccCCCCcccccCCCchhheEEEEEEEcCCCCEEE-c-----CC
Confidence 9999999999999999 66666 5888899999999999999999999999999999999999999986 1 23
Q ss_pred CCCcchhhhhc-CCCCceEEEEEEEEccCCCCceeEEEeecC-CHHHHHHHHHHHH
Q 011827 264 TGYDLKHLFIG-SEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAK 317 (476)
Q Consensus 264 ~g~dL~~~~~G-s~G~lGIIt~~tl~l~p~p~~~~~~~~~~~-~~~~~~~~~~~~~ 317 (476)
.++||||+++| ++|+|||||+++||++|.|+....+.+.++ +.+++.+++..++
T Consensus 187 ~~~DLf~a~rGg~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~a~~~l~~~~ 242 (495)
T 3fw9_A 187 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQ 242 (495)
T ss_dssp HCHHHHHHHTTSCTTSSCEEEEEEEECEECCSSEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CChhhhhhhhcccCCCcEEEEEEEEEEEeCCCeEEEEEEeecCcHHHHHHHHHHHH
Confidence 67899999998 789999999999999999987666555553 3455666665554
No 15
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=100.00 E-value=7.4e-34 Score=303.26 Aligned_cols=222 Identities=15% Similarity=0.175 Sum_probs=183.6
Q ss_pred HHHHHhhhCCCc--EE-eChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCccc-
Q 011827 83 VSYFKELLGEKS--VI-QDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP- 158 (476)
Q Consensus 83 ~~~L~~ilg~~~--v~-~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~- 158 (476)
+++|++.++... +. .++..+......|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.+.+.+
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~~~ 85 (503)
T 1zr6_A 6 FNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85 (503)
T ss_dssp TCHHHHHHHHTTCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTTTS
T ss_pred HHHHHHhhCcCCceecCCCccchHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccC
Confidence 356777776332 22 23344444456788788899999999999999999999999999999999999999886554
Q ss_pred CCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhC-CCCcccCCCCCCCccccccccCCCCCCCcccccccc
Q 011827 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDH-GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH 237 (476)
Q Consensus 159 ~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~-Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~ 237 (476)
..++++|||++||+| ++| ++++|+||||++|.+|+++|.++ |+.+|. |....+++||.+.+++.|+.+.+||.++
T Consensus 86 ~~~gvvIdl~~l~~i-~~d-~~~~v~v~aG~~~~~l~~~l~~~~gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~ 161 (503)
T 1zr6_A 86 EDGHLMLELDRMYRV-SVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTCPAVGVGGHVLGGGYGFATHTHGLTL 161 (503)
T ss_dssp SSSCEEEECTTCCCE-EEC-TTSCEEEETTCBHHHHHHHHHHTTSEECCC--CSCTTSBHHHHHHHCCCSTTHHHHCCGG
T ss_pred CCCcEEEECccCCCE-EEC-CCCeEEEecCCCHHHHHHHHHHcCCEEeCC--CCCCcCchhhhhcCCCCCcccccccChh
Confidence 456899999999999 899 88899999999999999999666 488773 6666788999999999999999999999
Q ss_pred ccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecC-CHHHHHHHH
Q 011827 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLL 313 (476)
Q Consensus 238 d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~-~~~~~~~~~ 313 (476)
|+|+++|||++||++++++.. .++||||+++|++|+|||||+++||++|.|+....+.+.+. +.+++.+++
T Consensus 162 D~v~~~~vV~a~G~i~~~~~~-----~~~dL~~a~rG~~g~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~ 233 (503)
T 1zr6_A 162 DWLIGATVVLADASIVHVSET-----ENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGL 233 (503)
T ss_dssp GGEEEEEEECTTSCEEEEBTT-----BSHHHHHHHTTCCSSSCEEEEEEECCEECCSCEEEEEEEECCCHHHHHHHH
T ss_pred heEEEEEEEecCCCEEEeCCC-----CCccHHHHHhccCCCcEEEEEEEEEEEecCceeEEEEEEEeCCHHHHHHHH
Confidence 999999999999999998865 56899999999999999999999999999975544443332 233343443
No 16
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=100.00 E-value=1.9e-33 Score=301.29 Aligned_cols=206 Identities=20% Similarity=0.281 Sum_probs=175.3
Q ss_pred EEeChhHHHhhc-cccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCe
Q 011827 95 VIQDEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 173 (476)
Q Consensus 95 v~~~~~~l~~y~-~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I 173 (476)
+..++..+.... +.|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.+.+.+..++++|||++||+|
T Consensus 35 ~~p~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~gvvIdl~~m~~i 114 (523)
T 2wdx_A 35 VTPDDPRYLNLKLRGANSRFNGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVKVIIDMSLLTEI 114 (523)
T ss_dssp ECTTSTTHHHHHTCSSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCSSSSSSSTTCCEEEECTTCCCE
T ss_pred ECCCCcchHHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccCCCCeEEEEcccCCCE
Confidence 333444555555 6777788899999999999999999999999999999999999999987766567999999999999
Q ss_pred EEEeCCCCEEEEecCccHHHHHHHHH-hCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCC--C
Q 011827 174 ITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLAN--G 250 (476)
Q Consensus 174 ~~id~~~~~v~V~aGv~~~~L~~~l~-~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~d--G 250 (476)
++|+++.+|+||||++|.+|+++|. ++|+.++. |++++++|||+++++++|+.+.+||.++|+|+++|||++| |
T Consensus 115 -~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G 191 (523)
T 2wdx_A 115 -AYDPSMNAFLIEPGNTLSEVYEKLYLGWNVTIPG--GVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQG 191 (523)
T ss_dssp -EEETTTTEEEECTTCBHHHHHHHHHHHHSCCCCC--CCCTTCBHHHHHHHTCCCTTHHHHCCGGGGEEEEEEEEECTTS
T ss_pred -EEcCCCCEEEEcCCCCHHHHHHHHHHhcCeEEcc--CCCCCCeeCccccCCCCCcccccccChhheEEEEEEEEecCCc
Confidence 9999999999999999999999998 59998874 8888899999999999999999999999999999999955 9
Q ss_pred cEEEecCCcccCCCCCcchhhhhcC-CCCceEEEEEEEEc-----------cCCCCc-eeEEEeec
Q 011827 251 DVIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT-----------PPKLSS-VNLAFLAC 303 (476)
Q Consensus 251 ~iv~~~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~~tl~l-----------~p~p~~-~~~~~~~~ 303 (476)
+++.+.....|++.++||||+++|+ +|+|||||+++||+ +|.|+. .....+.|
T Consensus 192 ~v~~~~~~~~~~~~~~DLf~a~rGgg~g~~GIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~ 257 (523)
T 2wdx_A 192 KARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTF 257 (523)
T ss_dssp CEEEEEEESCTTCTTHHHHHHTTTSCSSSSSEEEEEEECCSSCCCSCGGGSSCCCCSEEEEEEEEC
T ss_pred cEEEEecccccCCCChHHHHHhhccCCCCcEEEEEEEEEeecccCCCcccccCCCcccEEEEEEEe
Confidence 9866533222355667799999964 69999999999999 999863 33344444
No 17
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=100.00 E-value=7.5e-34 Score=297.13 Aligned_cols=210 Identities=17% Similarity=0.267 Sum_probs=185.5
Q ss_pred cccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCCCEEEEe
Q 011827 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (476)
Q Consensus 107 ~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~ 186 (476)
++|+..+...|.+|++|+|++||+++|++| +|+.++|+||++.+.+.+..+|++|||++||+|+++|+++.+++||
T Consensus 11 ~~w~~~~~~~p~~v~~P~s~~ev~~~v~~a----~~v~~~G~G~s~~~~~~~~~~g~vi~l~~l~~i~~~d~~~~~v~v~ 86 (422)
T 2vfr_A 11 TNWAGNITYTAKELLRPHSLDALRALVADS----ARVRVLGSGHSFNEIAEPGDGGVLLSLAGLPSVVDVDTAARTVRVG 86 (422)
T ss_dssp BCSSSSCBCSCSSCBCCSSHHHHHHHHHHC----SSEEECSSCCCCSSTTCCCTTCEEECSTTSCCCEEEETTTTEEEEE
T ss_pred ecCCCCccCCCCEEEeCCCHHHHHHHHHhC----CCEEEEECCCCCCCCccCCCCcEEEEhhhCCCcEEEcCCCCEEEEc
Confidence 588888999999999999999999999998 7999999999999887755679999999999998999999999999
Q ss_pred cCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEEecCCcccCCCCC
Q 011827 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (476)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~ 266 (476)
||+++.+|+++|.++|+.+| ++++.+.+||||++++|++|.+ .+||.++|+|+++++|++||++++++.+ ++
T Consensus 87 aG~~l~~l~~~l~~~Gl~l~-~~~~~~~~tvGG~i~~~~~G~~-~~~G~~~d~v~~~~vv~~~G~~~~~~~~---~~--- 158 (422)
T 2vfr_A 87 GGVRYAELARVVHARGLALP-NMASLPHISVAGSVATGTHGSG-VGNGSLASVVREVELVTADGSTVVIARG---DE--- 158 (422)
T ss_dssp TTCBHHHHHHHHHHTTEECS-CCCSSSCSBHHHHHHHTCCCCC-TTCCCGGGGEEEEEEECTTSCEEEEETT---ST---
T ss_pred CCCCHHHHHHHHHHcCCccc-CCCCCCCeeHHHHHhcCCCCCC-cccCcHHHheEEEEEEeCCCCEEEeCCC---CC---
Confidence 99999999999999999986 6777778899999999999986 6999999999999999999999999864 22
Q ss_pred cchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHH-HHHHHHHHHcCCceeEEEEeCHHHH
Q 011827 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ-KLLREAKRKLGEILSAFEFLDNQSM 335 (476)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~E~~d~~~~ 335 (476)
. |++++|++|++||||+++||+.|.|+.....+. +.+++++. +++.++. ..+.++|+++ ..+
T Consensus 159 ~-f~~~~g~~G~lGvit~~~l~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~e~~~-~~~ 221 (422)
T 2vfr_A 159 R-FGGAVTSLGALGVVTSLTLDLEPAYEMEQHVFT-ELPLAGLDPATFETVM----AAAYSVSLFT-DWR 221 (422)
T ss_dssp T-GGGTSSCTTTTCEEEEEEEECEECCEEEEEEEE-EECSTTCCHHHHHHHH----TSSSEEEEEE-CSS
T ss_pred C-cceEEecCCCCEEEEEEEEEEEecCceEEEEEe-cCCHHHHHHHHHHHHH----hcCCcEEEEe-cCC
Confidence 2 799999999999999999999999987766554 56888888 7777664 2357899988 543
No 18
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=100.00 E-value=3.1e-33 Score=299.49 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=174.6
Q ss_pred CCCcEEeChhHHHhhc-cccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCC
Q 011827 91 GEKSVIQDEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS 169 (476)
Q Consensus 91 g~~~v~~~~~~l~~y~-~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ 169 (476)
+...+..++..+.... +.|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.+.+.+..+||+|||++
T Consensus 29 ~~~v~~p~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGh~~~g~~~~~~~gvvIdl~~ 108 (521)
T 2ipi_A 29 ALVKVDRVDRRYQDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQ 108 (521)
T ss_dssp CCCEEESSSTTHHHHHTCCSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCTTCGGGCTTCCEEEECTT
T ss_pred CCeEECCCCcchHHHHhccccccccCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccCCCeEEEeccc
Confidence 4445555666666665 788888899999999999999999999999999999999999999988766556799999999
Q ss_pred CCCeEEEeCCCCEEEEecCccHHHHHHHHH-hCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeC
Q 011827 170 MNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLA 248 (476)
Q Consensus 170 ln~I~~id~~~~~v~V~aGv~~~~L~~~l~-~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~ 248 (476)
||+| ++|+++.+|+||||++|.+|+++|. ++|+.+|. |....++|||++.+++.|+.+.+||.++|+|+++|||++
T Consensus 109 l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~ 185 (521)
T 2ipi_A 109 MRQV-FYDSGKRAFAVEPGATLGETYRALYLDWGVTIPA--GVCPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVEVVVV 185 (521)
T ss_dssp CCCE-EEETTTTEEEECTTSBHHHHHHHHHHHHSBCCCC--CSCTTCBHHHHTTTTCCCTTHHHHCCGGGGEEEEEEEEE
T ss_pred CCCe-EEeCCCCEEEEeCCcCHHHHHHHHHHhcCceeCC--CCCCCcccCCcccCCCCCccccccccHhhcEEEEEEEEe
Confidence 9999 8999999999999999999999997 79999874 666778999999999999999999999999999999997
Q ss_pred C--CcEEEecCCcccCCCCCcchhhhhcC-CCCceEEEEEEEEc-----------cCCCC
Q 011827 249 N--GDVIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT-----------PPKLS 294 (476)
Q Consensus 249 d--G~iv~~~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~~tl~l-----------~p~p~ 294 (476)
| |+++.......+++.++||||+++|+ +|+|||||+++||+ +|.|+
T Consensus 186 d~~G~i~~~~~~~~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~~~~~~~~~~~~p~~~ 245 (521)
T 2ipi_A 186 DASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLLPKAP 245 (521)
T ss_dssp CTTSCEEEEEEECCTTCTTHHHHHHTTTSCSSSSCEEEEEEECCSSCCSSCGGGSSCBCC
T ss_pred cCCccEEEEecccccCCCCHHHHHHHhcCCCCceEEEEEEEEEeecccCCCcccccCCCC
Confidence 7 99765533322344556799999985 69999999999999 99876
No 19
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=100.00 E-value=6.3e-33 Score=295.34 Aligned_cols=197 Identities=13% Similarity=0.162 Sum_probs=171.0
Q ss_pred hhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEc
Q 011827 88 ELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINM 167 (476)
Q Consensus 88 ~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl 167 (476)
.-+....+.+++..+......|+.++.+.|.+|++|+|++||+++|++|+++++|++++||||++.+.+.+.++|++|||
T Consensus 6 ~s~~~~~~~p~~~~y~~~~~~~n~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~gvvIdl 85 (501)
T 3pop_A 6 ASVPPFTVGREDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDLVLDL 85 (501)
T ss_dssp ---CCEEEETTSTTHHHHTCCSCTTSCCCCSEEEECSSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTSSCCSEEEEC
T ss_pred ccCCCceECCCCcchHHHHHHHhhccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCccCCCccccCCCEEEEEe
Confidence 33444445556666777777898888999999999999999999999999999999999999999988876567999999
Q ss_pred CCCCCeEEEeCCCCEEEEecCccHHHHHHHHH-hCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEE
Q 011827 168 GSMNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAV 246 (476)
Q Consensus 168 ~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~-~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV 246 (476)
++||+| ++|+++.+++||||++|.+|+++|. ++|+.++ .|.+++++|||.++++++|..+.+||.++|+|+++|||
T Consensus 86 ~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~--~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~evV 162 (501)
T 3pop_A 86 HNLHAI-GPAADGAGVRVGSGATVDQVQKALFRRWNAALP--LGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVA 162 (501)
T ss_dssp TTCCCE-EECTTSSSEEEETTCBHHHHHHHHHHHHSBCCC--CCSBTTCBHHHHHHHCCCCTTHHHHCCGGGGEEEEEEE
T ss_pred cccCCe-EEcCCCCEEEEECCcCHHHHHHHHHhhcCeEeC--CCCCCCceEeeccccCCCcccccccccHHHhEEEEEEE
Confidence 999998 8999999999999999999999996 5799887 47777888999999999999999999999999999999
Q ss_pred e--CCCc--EEEecCCcccCCCCCcchhhhhcC-CCCceEEEEEEEEc
Q 011827 247 L--ANGD--VIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT 289 (476)
Q Consensus 247 ~--~dG~--iv~~~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~~tl~l 289 (476)
+ +||+ ++++++. ....++||||+++|+ +|+|||||+++||+
T Consensus 163 ~~da~G~~~~v~~~~~--~~~~~~DLf~a~rG~G~g~fGIVt~~~lk~ 208 (501)
T 3pop_A 163 VVDESRTVRLVTARAD--DTGDLGELFWAHTGGGGGNFGVVTAYEFRS 208 (501)
T ss_dssp EECTTSCEEEEEEETT--CCHHHHHHHHHTTTSCTTSSCEEEEEEECC
T ss_pred EecCCCCEEEEEeccC--CCCCCccHHHHhhccCCCCcEEEEEEEEEe
Confidence 9 8999 5655321 123568999999998 79999999999999
No 20
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=100.00 E-value=6.4e-35 Score=295.03 Aligned_cols=194 Identities=18% Similarity=0.296 Sum_probs=168.7
Q ss_pred CCHHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcc
Q 011827 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (476)
Q Consensus 78 ~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~ 157 (476)
++.+++++|++++|++.+.+ +.++..|++ ..+++.|.+|++|+|++||++++++|+++++|++++|||||+.++..
T Consensus 14 ~~~~~~~~l~~~l~~~~v~~-~~~l~~~~t---~~~~~~p~~vv~P~s~eev~~~l~~a~~~~~pv~~~GgGtnl~~~~~ 89 (326)
T 1hsk_A 14 INKDIYQALQQLIPNEKIKV-DEPLKRYTY---TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREG 89 (326)
T ss_dssp -CHHHHHHHHHHSCGGGEEE-EEEGGGTCT---TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECTT
T ss_pred chHHHHHHHHHhcCccceec-CcchHHhcc---CCcCCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCccccCCC
Confidence 56788999999999878888 677888873 35788999999999999999999999999999999999999987766
Q ss_pred cCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCC----CcccCCCCCCCccccccccCCCCCCCcccc
Q 011827 158 PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRY 233 (476)
Q Consensus 158 ~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl----~l~~~~g~~~~~tvGG~va~nagG~~~~~y 233 (476)
+. ++++|||++||+| ++|. .+++||||++|.+|++++.++|+ .++.+|| ||||++++|+|| |
T Consensus 90 ~~-~gvvI~l~~m~~i-~id~--~~v~v~aGv~~~~l~~~l~~~Gl~gLe~~~~~Pg-----tvGG~i~~nagg-----y 155 (326)
T 1hsk_A 90 GI-RGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG-----SIGGAVYMNAGA-----Y 155 (326)
T ss_dssp CE-EEEEEECTTCCCE-EEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCS-----BHHHHHHHTCEE-----T
T ss_pred CC-CeEEEEeCCCCce-EEcC--CEEEEeCCCcHHHHHHHHHHCCCccccccCCCcc-----hhhHHHhccccc-----C
Confidence 54 6899999999999 8984 68999999999999999999999 6666554 599999999998 9
Q ss_pred c-cccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCC-CCc
Q 011827 234 G-SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK-LSS 295 (476)
Q Consensus 234 G-~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~-p~~ 295 (476)
| .++|+|+++++|++||++++++.. +...||++..+. ++| ||||+++||++|. |+.
T Consensus 156 G~~~~d~v~~v~vv~~~G~i~~~~~~--~~~~gyr~~~l~--s~g--gIIt~~~l~l~p~~p~~ 213 (326)
T 1hsk_A 156 GGEVKDCIDYALCVNEQGSLIKLTTK--ELELDYRNSIIQ--KEH--LVVLEAAFTLAPGKMTE 213 (326)
T ss_dssp TEEHHHHEEEEEEECTTSCEEEEETT--TTTCBTTBCHHH--HTT--CEEEEEEEECEECCHHH
T ss_pred chhhhhhEEEEEEEeCCCCEEEEChH--HcCCCccccccC--CCC--EEEEEEEEEEEcCCHHH
Confidence 9 899999999999999999998865 455777776554 456 9999999999998 543
No 21
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=100.00 E-value=2.9e-32 Score=292.30 Aligned_cols=197 Identities=20% Similarity=0.253 Sum_probs=169.6
Q ss_pred EEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeE
Q 011827 95 VIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNII 174 (476)
Q Consensus 95 v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~ 174 (476)
+..++..+....+.|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.+.+.+..+|++|||++||+|
T Consensus 37 ~~p~~~~Y~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~gvvIdl~~l~~i- 115 (530)
T 2y3s_A 37 VAPGDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSAV- 115 (530)
T ss_dssp ECTTSTTHHHHTCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTCTTCCEEEECTTCCCE-
T ss_pred ECCCCccHHHHHhHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccCCCeEEEEcccCCCE-
Confidence 3345555666667788788899999999999999999999999999999999999999887665567999999999999
Q ss_pred EEeCCCCEEEEecCccHHHHHHHHHh-CCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEe--CCCc
Q 011827 175 TFDKGSGVLVCEAGCILENLVSFLDD-HGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL--ANGD 251 (476)
Q Consensus 175 ~id~~~~~v~V~aGv~~~~L~~~l~~-~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~--~dG~ 251 (476)
++|+++.+|+||||++|.+|+++|.+ +|+.++ .|++++++|||.+++++.|+.+.+||.++|+|+++|||+ ++|+
T Consensus 116 ~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~--~G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~ 193 (530)
T 2y3s_A 116 GFDEERGAFAVEAGATLGAVYKTLFRVWGVTLP--GGACPDVGAGGHILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGD 193 (530)
T ss_dssp EEETTTTEEEEETTCBHHHHHHHHHHHHSCCCC--CCSCTTCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEEEECTTSC
T ss_pred EEcCCCCEEEEeCCCCHHHHHHHHHhhcCeEEe--CCCCCCCCcCCCcCCCCCCcccccccchhhheeeEEEEEecCCCc
Confidence 89999999999999999999999985 999887 488888999999999999999999999999999999999 5599
Q ss_pred EEEecCCcccCCCCCcchhhhhcC-CCCceEEEEEEEEc------------cCCCC
Q 011827 252 VIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT------------PPKLS 294 (476)
Q Consensus 252 iv~~~~~~~k~~~g~dL~~~~~Gs-~G~lGIIt~~tl~l------------~p~p~ 294 (476)
++.+.....+.+.++||||+++|+ +|+|||||+++||+ +|.|+
T Consensus 194 i~~v~~~~~~~~~d~DLf~a~rG~g~g~fGIVt~~~l~l~~~~~~~~~~~~~p~~~ 249 (530)
T 2y3s_A 194 ARTVIATREPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAEADVPPEPGRLLPRPP 249 (530)
T ss_dssp EEEEEEESCTTCTTHHHHHHTTTSCTTSSCEEEEEEECCCCSSCCSCGGGSSCCCC
T ss_pred EEEEeccccccCCChHHHHHHhcCCCCCcEEEEEEEEEeecccCccccccccCCCC
Confidence 854422100122334599999987 59999999999999 99875
No 22
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=99.97 E-value=2.8e-30 Score=274.71 Aligned_cols=194 Identities=17% Similarity=0.289 Sum_probs=166.3
Q ss_pred ccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCC-----CCcccCCCeEEEEcC-CCCCeEEEeCC
Q 011827 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-----GGSVPVFDEVIINMG-SMNNIITFDKG 179 (476)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~-----g~~~~~~~gvvIdl~-~ln~I~~id~~ 179 (476)
.++|+..+.+.|.+|++|+|++||+++|++|+++++||+++|+|||+. ++. +..+||+|||+ +||+| ++|++
T Consensus 19 ~~nWs~~~~~~P~~vv~P~s~eEV~~~Vk~A~~~~~pv~v~GgGhs~~~l~~~gG~-~~~~GVvIdls~~Ln~I-~vD~~ 96 (540)
T 3js8_A 19 FKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGV-SCPAVVLLDTTRYLTAM-SIDAS 96 (540)
T ss_dssp EECTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECSCCCSSCSSCCTTC-SSCSEEEEETTTTCCCE-EEECS
T ss_pred eeccccccCCCccEEEEcCCHHHHHHHHHHHHHcCCeEEEEeCCCCcccccccCCC-CCCCeEEEECcCcCCCE-EECCC
Confidence 457888889999999999999999999999999999999999999996 554 55789999995 69999 99985
Q ss_pred --CCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCC----------ccccccccccEeEEEEEe
Q 011827 180 --SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLGLEAVL 247 (476)
Q Consensus 180 --~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~----------~~~yG~~~d~V~~~evV~ 247 (476)
..+|+||||+++.+|+++|.++|+.++..+++ +.+||||++++|+||.+ +.+||.++|+|+++++|+
T Consensus 97 ~~~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi-~~~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D~V~~levV~ 175 (540)
T 3js8_A 97 GPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAP-GDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVV 175 (540)
T ss_dssp SSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSC-SCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEEEEEEEE
T ss_pred CCccEEEEccCCCHHHHHHHHHHcCCEEEecCCC-CCeEEcccccCCCCcccccccccccccccccccHHHhEEEEEEEc
Confidence 57999999999999999999999999988886 55899999999999986 479999999999999999
Q ss_pred CCCc-----EEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHH
Q 011827 248 ANGD-----VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQK 311 (476)
Q Consensus 248 ~dG~-----iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~ 311 (476)
+||+ ++++++ .++||++++.|+ |+ ||||+++||++|.+......+. .-+++++.+
T Consensus 176 adG~~~~~~i~~~s~------~~~DL~a~r~G~-G~-gIVTevtlrl~P~~~l~~~~~~-~~~~~e~l~ 235 (540)
T 3js8_A 176 YDKASGAYALRKFAR------NDPQIAPLLAHV-GR-SLIVEATLQAAPNQRLRCQSWF-NIPYGEMFA 235 (540)
T ss_dssp EETTTTEEEEEEEET------TSGGGHHHHTCT-TS-SCEEEEEEEEEECCEEEEEEEC-CSCHHHHTC
T ss_pred CCCCCceeeEEEeCC------CChhHHHHHhcC-CC-eEEEEEEEEEEECCceEEEEEe-cCCHHHHHh
Confidence 9998 666653 468996665554 77 5999999999999977655432 236667664
No 23
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=99.97 E-value=3e-30 Score=278.63 Aligned_cols=202 Identities=20% Similarity=0.302 Sum_probs=171.6
Q ss_pred hHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCccc----CCCeEEEEc-CCCCCeE
Q 011827 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP----VFDEVIINM-GSMNNII 174 (476)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~----~~~gvvIdl-~~ln~I~ 174 (476)
..+..+.++|+..+.+.|.+|++|+|++||+++|++|+++++|++++|+|||+.+.+.. ..+|++||| ++||+|
T Consensus 19 ~~y~~~~~~w~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~v~~~G~G~s~~~~~l~~~~~~~~gvvIdl~~~l~~i- 97 (561)
T 2i0k_A 19 ALFQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGI- 97 (561)
T ss_dssp CCEEEEEECTTSSSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCE-
T ss_pred HhHHHHHhhhhhccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEECCCCCcccccccCCCcCCCeEEEechhhCCce-
Confidence 33444567898889999999999999999999999999999999999999998543221 136899999 899999
Q ss_pred EEeC--CCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCC----------ccccccccccEeE
Q 011827 175 TFDK--GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLG 242 (476)
Q Consensus 175 ~id~--~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~----------~~~yG~~~d~V~~ 242 (476)
++|+ ++.+|+||||+++.+|+++|.++|+.+|+.|++ +.+||||++++|+||.. +.+||.++|+|++
T Consensus 98 ~vd~~~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~~~-~~~TvGG~i~~~~~G~~l~~gG~~~~s~~~~G~~~d~V~~ 176 (561)
T 2i0k_A 98 TVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAP-GVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTE 176 (561)
T ss_dssp EEECCSSSCEEEEETTSBHHHHHHHHHHTTEECSSCCSC-TTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEE
T ss_pred EecCcCCccEEEEcCCCCHHHHHHHHHHcCCcccccCCC-CCcccCCCcccCCcccccccCCcccccccccccHhheEEE
Confidence 9998 788999999999999999999999999988876 66899999999999986 7789999999999
Q ss_pred EEEEeCCCc---EEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHH
Q 011827 243 LEAVLANGD---VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 312 (476)
Q Consensus 243 ~evV~~dG~---iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~ 312 (476)
+|+|++||+ +++++++ .+||+++++|. |. ||||+++||+.|.|+.....+..++ ++++++.
T Consensus 177 ~evV~~dG~~~~~~~~~~~------~~dl~~a~~g~-G~-giIt~~tl~l~p~~~~~~~~~~~~~-~~~~l~~ 240 (561)
T 2i0k_A 177 LTAVVWNGTTYALETYQRN------DPRITPLLTNL-GR-CFLTSVTMQAGPNFRQRCQSYTDIP-WRELFAP 240 (561)
T ss_dssp EEEEEECSSSEEEEEEETT------SGGGHHHHSCT-TS-SCEEEEEEECEECCEEEEEEECCSC-HHHHTCC
T ss_pred EEEEeCCCCEEEeeeccCC------CccHHHHHhcC-CC-EEEEEEEEEEEECCceEEEEEEccC-HHHHHHH
Confidence 999999999 6666542 35899988854 55 8999999999999987766665454 6665554
No 24
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=99.97 E-value=1.3e-30 Score=262.38 Aligned_cols=197 Identities=16% Similarity=0.278 Sum_probs=159.8
Q ss_pred CCCHHHHHHHHhhhCCCcEEeChhHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc
Q 011827 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (476)
Q Consensus 77 ~~~~~~~~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~ 156 (476)
+|+++++++|+++++++++.++ .++..|++ .++++.|+++++|+|++||++++++|+++++|+.++|+|||+.++.
T Consensus 19 ~~~~~~~~~L~~~lg~~~v~~~-~~l~~~tt---~~igg~p~~vv~P~s~eev~~~v~~a~~~~~pv~v~GgGsnl~~~~ 94 (322)
T 3tx1_A 19 YFQSNAMNNLQTKFPHIAIKLN-EPLSKYTY---TKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKD 94 (322)
T ss_dssp ------CCCHHHHCTTSEEEEE-EEGGGGST---TSCCCEEEEEEECSSHHHHHHHHHHHHHTTCCEEEESCCTTEEECT
T ss_pred ccCHHHHHHHHHhcCCcceEcC-cchHHhcc---CCcCceeeEEEEeCCHHHHHHHHHHHHHcCCcEEEECCccCCCcCC
Confidence 4667888999999999888888 67888983 4788999999999999999999999999999999999999997654
Q ss_pred ccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccc-c
Q 011827 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRY-G 234 (476)
Q Consensus 157 ~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~y-G 234 (476)
.+ .+|++|||++||+| .+|. .+++|+||++|.+|.+++.++|+. +.+.++.+ +||||++++|+|| | |
T Consensus 95 ~~-~~gvvI~l~~~~~I-~~d~--~~v~v~aG~~~~~l~~~l~~~Gl~Gle~~~giP--gTVGGav~~NaGg-----yGg 163 (322)
T 3tx1_A 95 GG-IRGVILHLDLLQTI-ERNN--TQIVAMSGAKLIDTAKFALNESLSGLEFACGIP--GSIGGALHMNAGA-----YGG 163 (322)
T ss_dssp TC-EEEEEEECTTCCCE-EEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCC--SBHHHHHHHTCEE-----TTE
T ss_pred CC-CCeEEEECCCCCcE-EECC--CEEEEecCcCHHHHHHHHHHcCCcccccCCCCc--chhHHHHHhCccC-----ccc
Confidence 32 36899999999999 5763 599999999999999999999995 33334554 4599999999999 7 6
Q ss_pred cccccEeEEEEEeCCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCC
Q 011827 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (476)
Q Consensus 235 ~~~d~V~~~evV~~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~ 294 (476)
.++|+|+++++|++||++++++.. ..+|++..++.|++ .||||+++||+.|.|+
T Consensus 164 ~~~d~v~~vevV~~~G~i~~~~~~----~~~~~yR~s~~g~~--~~IIt~~tl~L~p~~~ 217 (322)
T 3tx1_A 164 EISDVLEAATVLTQTGELKKLKRS----ELKAAYRFSTIAEK--NYIVLDATFSLALEEK 217 (322)
T ss_dssp EHHHHEEEEEEECTTSCEEEEEGG----GCC--CC-CTTTGG--GCEEEEEEEECEECCH
T ss_pred chHhhEEEEEEEcCCCCEEEechH----HcCcchhhcccCCC--CEEEEEEEEEEEeCCH
Confidence 899999999999999999998653 23445544444443 4799999999999874
No 25
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=99.94 E-value=4.3e-26 Score=231.96 Aligned_cols=198 Identities=13% Similarity=0.091 Sum_probs=161.4
Q ss_pred hHHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeC-
Q 011827 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK- 178 (476)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~- 178 (476)
.+|+.|+ ++++++.|+++++|+|++||++++++|+++++|+.++|+|||+.+... .+|++|+++ |++| ++++
T Consensus 17 ~~L~~~t---t~~igg~a~~vv~p~s~eel~~~v~~a~~~~ipv~vlGgGSNll~~d~--~~GvVI~l~-~~~i-~v~~~ 89 (357)
T 3i99_A 17 ANLKPYH---TFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNMLFTCH--YTGMIVVNR-LNGI-EHQQD 89 (357)
T ss_dssp EESGGGS---TTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEESSCTTEEECSC--EEEEEEEEC-CCCE-EEEEC
T ss_pred Ccchhhc---cCCCCccceEEEEECCHHHHHHHHHHHHHcCCCEEEECCCcCcccCCC--CCeEEEEcC-CCce-EEecc
Confidence 4577787 568899999999999999999999999999999999999999976653 469999998 9998 6653
Q ss_pred -CCCEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeC-CCcEEE
Q 011827 179 -GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVID 254 (476)
Q Consensus 179 -~~~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~-dG~iv~ 254 (476)
++.+++|+||++|.+|.+++.++|+. +++..++++ ||||++++|+|. ||. ++|+|+++++|++ ||++++
T Consensus 90 ~~~~~v~v~AG~~~~~l~~~a~~~Gl~GlE~l~gIPG--tVGGav~~NaGa-----YG~e~~d~v~~vevv~~~~G~i~~ 162 (357)
T 3i99_A 90 DDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPG--CAGSAPIQNIGA-----YGVEFKDVCDYVEYLCLETGTVKR 162 (357)
T ss_dssp SSEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCCS--BGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCcHHHHHHHHHHcCCcCccccCCCCc--hhHHHHHhchhh-----hhhhHHhhEeEEEEEECCCCcEEE
Confidence 45689999999999999999999997 665666665 599999999986 997 9999999999999 999999
Q ss_pred ecCCcccCCCCCcchhhhhcC-----CCCceEEEEEEEEccCCCCceeE-----EEeecCCHHHHHHHHHHHHHH
Q 011827 255 MLGTLRKDNTGYDLKHLFIGS-----EGSLGIVTKVSIHTPPKLSSVNL-----AFLACKDYFSCQKLLREAKRK 319 (476)
Q Consensus 255 ~~~~~~k~~~g~dL~~~~~Gs-----~G~lGIIt~~tl~l~p~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 319 (476)
.+.. |+++.+++| +|++||||+++||+.|.|..... ..+...+.++..+++.++++.
T Consensus 163 ~~~~--------dl~f~YR~s~~~~~~g~~gIIt~v~f~L~p~~~~~~~y~~l~~~l~~~~~~~~~~~v~~~R~~ 229 (357)
T 3i99_A 163 LTME--------ECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHDVYQRVCATRME 229 (357)
T ss_dssp EETG--------GGCCBTTBCGGGTTTTTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTCCHHHHHHHHHHHHHH
T ss_pred EeHH--------HcCcccccccCCCccCCCEEEEEEEEEEEeCCccccchHHHHhhhccCCHHHHHHHHHHHHhc
Confidence 8754 555666554 35899999999999998642100 000234667777777776643
No 26
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=99.94 E-value=1.2e-25 Score=227.85 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=158.9
Q ss_pred HHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCC-
Q 011827 102 LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS- 180 (476)
Q Consensus 102 l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~- 180 (476)
|+.|+ +.++++.|+++++|+|++||++++++|+++++|+.++|+|||+.+... .+|++|+++ |++|..++.++
T Consensus 3 L~~~t---t~~igg~a~~~v~p~s~eel~~~l~~a~~~~~pv~vlGgGSnll~~d~--~~GvVI~l~-~~~i~~i~~~~~ 76 (340)
T 1uxy_A 3 LKPWN---TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLED--YRGTVIINR-IKGIEIHDEPDA 76 (340)
T ss_dssp CGGGS---TTCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEEECSC--EEEEEEEEC-CCCEEEEECSSE
T ss_pred ccccc---cCCCCccccEEEEeCCHHHHHHHHHHHHHcCCCEEEECCCcCCcccCC--CCeEEEEcc-CCCcEEEecCCC
Confidence 45566 468889999999999999999999999999999999999999977653 369999996 99997677766
Q ss_pred CEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCcccccc-ccccEeEEEEEeC-CCcEEEecC
Q 011827 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVIDMLG 257 (476)
Q Consensus 181 ~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG~-~~d~V~~~evV~~-dG~iv~~~~ 257 (476)
.+++|+||++|.+|.+++.++|+. +.+..+.++ ||||++.+|+|+ ||. ++|+|.++++|++ +|++++++.
T Consensus 77 ~~v~vgAG~~~~~l~~~~~~~Gl~Gle~~~gIPG--tVGGa~~~NaGa-----yG~ei~d~v~~v~vv~~~~G~v~~~~~ 149 (340)
T 1uxy_A 77 WYLHVGAGENWHRLVKYTLQEGMPGLENLALIPG--CVGSSPIQNIGA-----YGVELQRVCAYVDSVELATGKQVRLTA 149 (340)
T ss_dssp EEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCCS--BGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEEEET
T ss_pred eEEEEecCCCHHHHHHHHHHCCCCccccccCCcc--chhHHHHhcccc-----chhhHHhheeEEEEEECCCCcEEEEeH
Confidence 689999999999999999999996 665566665 699999999988 995 9999999999997 999999875
Q ss_pred CcccCCCCCcchhhhhcC-----CCCceEEEEEEEEccCCCCce----eEEEe--ecCCHHHHHHHHHHHHH
Q 011827 258 TLRKDNTGYDLKHLFIGS-----EGSLGIVTKVSIHTPPKLSSV----NLAFL--ACKDYFSCQKLLREAKR 318 (476)
Q Consensus 258 ~~~k~~~g~dL~~~~~Gs-----~G~lGIIt~~tl~l~p~p~~~----~~~~~--~~~~~~~~~~~~~~~~~ 318 (476)
. |+++.+++| ++++||||+++||+.|.|... ....+ ..++..+..+++.+.|.
T Consensus 150 ~--------d~~~gYR~s~~~~~~~~~gIVt~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 213 (340)
T 1uxy_A 150 K--------ECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRT 213 (340)
T ss_dssp G--------GGTCBTTBCGGGTTTTTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred H--------HhccccCcCccCCcCCCCEEEEEEEEEEEcCCCccCCHHHHhhhccccccHHHHHHHHHHHHH
Confidence 4 566666554 357999999999999986321 00000 12355677777776664
No 27
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=99.91 E-value=6.8e-25 Score=215.14 Aligned_cols=176 Identities=20% Similarity=0.193 Sum_probs=143.2
Q ss_pred HHHhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcccCCCeEEEEcCCCCCeEEEeCCC
Q 011827 101 VLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS 180 (476)
Q Consensus 101 ~l~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~~~~~gvvIdl~~ln~I~~id~~~ 180 (476)
+++.|+ +.++++.|+ +++|+|++||++++ ++|+.++|+|||+.++..+.++|++|++++|++| ++| +
T Consensus 10 ~l~~~t---t~~igg~a~-vv~p~s~edv~~~v------~ipv~v~GgGsnll~~d~~~~~GvVI~l~~~~~I-~vd--~ 76 (268)
T 2gqt_A 10 LLKDYT---TLGVGGPAE-LWTVETREELKRAT------EAPYRVLGNGSNLLVLDEGVPERVIRLAGEFQTY-DLK--G 76 (268)
T ss_dssp EGGGGS---SSCCCCEEE-EEEECSHHHHHHHT------TSCEEECSSSSSEEECTTCCSSEEEEECGGGGCB-CTT--S
T ss_pred ChHHhc---ccccCcceE-EEEeCCHHHHHHHh------CCCeEEcCCCcCceecCCCcCCeEEEEcCCCCCc-EEc--C
Confidence 467777 347888899 99999999999999 8999999999999887766566999999999998 565 2
Q ss_pred CEEEEecCccHHHHHHHHHhCCCC-cccCCCCCCCccccccccCCCCCCCccccc-cccccEeEEEEEeCCCcEEEecCC
Q 011827 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDMLGT 258 (476)
Q Consensus 181 ~~v~V~aGv~~~~L~~~l~~~Gl~-l~~~~g~~~~~tvGG~va~nagG~~~~~yG-~~~d~V~~~evV~~dG~iv~~~~~ 258 (476)
+|+||++|.+|.+++.++|+. +.+..+.++ ||||++++|+|+ || .++|+|+++++| +||++++++..
T Consensus 77 ---~v~aG~~~~~l~~~~~~~Gl~Gle~~~giPG--tvGGav~~NaGa-----yG~e~~d~v~~v~vv-~~G~v~~~~~~ 145 (268)
T 2gqt_A 77 ---WVGAGTLLPLLVQEAARAGLSGLEGLLGIPA--QVGGAVKMNAGT-----RFGEMADALEAVEVF-HDGAFHVYCPE 145 (268)
T ss_dssp ---EEETTSBHHHHHHHHHHTTEESCGGGTTCCC--BHHHHHHTTCEE-----TTEEGGGGEEEEEEE-ETTEEEEECGG
T ss_pred ---EEECCCCHHHHHHHHHHcCCcCCccccCccc--hhHHHHHhcccc-----CchhHHhheeEEEEE-CCCcEEEEchH
Confidence 899999999999999999996 444455554 699999999987 99 699999999999 99999998753
Q ss_pred cccCCCCCcchhhhhcCCCC-ceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHHH
Q 011827 259 LRKDNTGYDLKHLFIGSEGS-LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (476)
Q Consensus 259 ~~k~~~g~dL~~~~~Gs~G~-lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (476)
|+++.++++.-. -||||+++||+.|.+ +.++++..+++.+.+
T Consensus 146 --------~l~~~YR~s~~~~~gIVt~~~~~L~~~~---------~~~i~~~~~~v~~~R 188 (268)
T 2gqt_A 146 --------ELGFGYRKSHLPPGGIVTRVRLKLKERP---------KEEILRRMAEVDRAR 188 (268)
T ss_dssp --------GSCCBTTBCCCSTTCEEEEEEECCEECC---------HHHHHHHHHHHHHHT
T ss_pred --------HcccccCCCCcCCCceEEEEEEEEEeCC---------HHHHHHHHHHHHHHH
Confidence 677777766411 149999999999974 234444445554444
No 28
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=99.90 E-value=6.5e-24 Score=202.45 Aligned_cols=128 Identities=23% Similarity=0.270 Sum_probs=117.7
Q ss_pred EEeCCCCEEEEecCccHHHHHHHHHhCCCCcccCCCCCCCccccccccCCCCCCCccccccccccEeEEEEEeCCCcEEE
Q 011827 175 TFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVID 254 (476)
Q Consensus 175 ~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~l~~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~~~evV~~dG~iv~ 254 (476)
++|+++.+|+||||+++.+|+++|.++|++++.+|++.+. ||||++++|+|| .+||.. |+|+++++|++||++++
T Consensus 2 ~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl~~~~~Pg~~~~-tVGG~v~~nagG---~~yG~~-D~V~~vevV~~dG~i~~ 76 (219)
T 2yvs_A 2 EVHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPG-GVGGLVARGGFA---QTFFFP-AEVLGLTFRTPKGRRVR 76 (219)
T ss_dssp EEETTTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTT-HHHHHHHTTCSS---BSSCGG-GGEEEEEEECTTSCEEE
T ss_pred eEcCCCCEEEEcCCCcHHHHHHHHHHcCCEEeccCCCCCC-chhheeccCccc---ccCCCc-cEEEEEEEEeCCCCEEE
Confidence 7899999999999999999999999999999988886666 999999999998 789999 99999999999999999
Q ss_pred ecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHH
Q 011827 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYF 307 (476)
Q Consensus 255 ~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~ 307 (476)
++.+..|++.||||+++++|++|+|||||+++||++|.|+......+.+.+++
T Consensus 77 ~~~~~~kn~~gydl~~~~~Gs~G~lGIVt~~tlrl~p~~~~~~~~~~~~~~~~ 129 (219)
T 2yvs_A 77 AGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSFP 129 (219)
T ss_dssp EECSSCSSSSCSCHHHHHTTCTTTTCEEEEEEEECEECSEEEEEEEECCSSCC
T ss_pred ECCccccCCCCcchHHHhccCCCceEEEEEEEEEEEECCcccEEEEEecCCHH
Confidence 99877788899999999999999999999999999999988777666665543
No 29
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=98.61 E-value=9.2e-08 Score=94.47 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=98.1
Q ss_pred ccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCC--cccCCCeEEEEcCC---CCCeEEEeCCCCEEEEecCccH
Q 011827 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (476)
Q Consensus 117 p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~--~~~~~~gvvIdl~~---ln~I~~id~~~~~v~V~aGv~~ 191 (476)
+--+++|+|.+|+.++++.. +.+..+.||||++.-. ......+++||+++ |+.| +.+ +..++++||+++
T Consensus 5 ~~~~~~P~s~~ea~~ll~~~---~~~~~ilaGGT~ll~~~~~~~~~~~~lIdl~~i~eL~~i-~~~--~~~l~iGA~~tl 78 (287)
T 1ffv_C 5 RFEYHAPKSVGEAVALLGQL---GSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGI-REE--GSTVVIGAMTVE 78 (287)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCE-EEE--TTEEEEETTCBH
T ss_pred cceEECCCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Eec--CCEEEEccCCcH
Confidence 34589999999999999853 3567889999996321 00013479999985 6776 454 456999999999
Q ss_pred HHHHHH-HHhCCCC-----cc--cCCCCCCCccccccccCCCCCCCccccccccccEe----EEEEEeCCCcEEEecCCc
Q 011827 192 ENLVSF-LDDHGFI-----MP--LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANGDVIDMLGTL 259 (476)
Q Consensus 192 ~~L~~~-l~~~Gl~-----l~--~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~----~~evV~~dG~iv~~~~~~ 259 (476)
.+|.+. +.++++. +. -.+..-+..||||+|++|++. +.+...++ .+++..++| ..+....
T Consensus 79 ~~l~~~~~~~~~~~~L~~a~~~~a~~qiRN~gTvGGni~~~~~~------~D~~~~l~Al~A~v~~~~~~G-~r~i~~~- 150 (287)
T 1ffv_C 79 NDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDPG------NDHPALSIAVEAHFVLEGPNG-RRTVPAD- 150 (287)
T ss_dssp HHHHHCHHHHHHCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCTT------CSHHHHHHHTTCEEEEEETTE-EEEEEST-
T ss_pred HHHhhChHHHHHhHHHHHHHHHhCCHHHhcceechhhhccCCCc------HHHHHHHHHcCcEEEEEcCCc-eEEEEHH-
Confidence 999963 3333332 11 122223357899999999752 22222222 588888999 3443322
Q ss_pred ccCCCCCcchhhhhcC-CCCceEEEEEEEEccCC
Q 011827 260 RKDNTGYDLKHLFIGS-EGSLGIVTKVSIHTPPK 292 (476)
Q Consensus 260 ~k~~~g~dL~~~~~Gs-~G~lGIIt~~tl~l~p~ 292 (476)
|++..++-+ ...-.|||+++|.+.+.
T Consensus 151 -------df~~g~~~t~l~~~eii~~i~ip~~~~ 177 (287)
T 1ffv_C 151 -------GFFLGTYMTLLEENEVMVEIRVPAFAQ 177 (287)
T ss_dssp -------TTEEETTEESCCTTCEEEEEEEECCCT
T ss_pred -------HHhcCcccccCCCCCEEEEEEecCCCC
Confidence 444333211 11125899999987653
No 30
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.89 E-value=5.4e-06 Score=86.92 Aligned_cols=154 Identities=13% Similarity=0.080 Sum_probs=96.0
Q ss_pred CCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCC--cccCCCeEEEEcCC---CCCeEEEeCCCCEEEEecCc
Q 011827 115 GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGC 189 (476)
Q Consensus 115 ~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~--~~~~~~gvvIdl~~---ln~I~~id~~~~~v~V~aGv 189 (476)
|....+++|+|.+|+.++++... +..+.||||++.-. .-....+++||+++ |+.| +.+ +..++++||+
T Consensus 175 G~a~~y~~P~sl~ea~~ll~~~~----~a~ilaGGT~L~~~~k~~~~~~~~lIdl~~i~eL~~I-~~~--~~~l~IGA~v 247 (462)
T 2w3s_A 175 GQTAPAFLPETSDALADWYLAHP----EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQI-RET--PDGYGIGAGV 247 (462)
T ss_dssp ----CCBCCSSHHHHHHHHHHCT----TCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCE-EEE--TTEEEEETTC
T ss_pred CCccEEEecCCHHHHHHHHhhCC----CCEEEeCCchhhhhhhccCCCCCEEEEcCCChhhCcE-EEc--CCEEEEccCC
Confidence 44456789999999999987532 35678999998532 10113478999998 6776 554 4469999999
Q ss_pred cHHHHHHHHHhCCCC-c----cc--CCCCCCCccccccccCCCCCCCccccccccccEe----EEEEEeCCCcEEEecCC
Q 011827 190 ILENLVSFLDDHGFI-M----PL--DLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANGDVIDMLGT 258 (476)
Q Consensus 190 ~~~~L~~~l~~~Gl~-l----~~--~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~----~~evV~~dG~iv~~~~~ 258 (476)
++.+|.+.+. .++. + .. .+..-+..||||+|++++.+ +.+...++ .+++..++|+ .+....
T Consensus 248 tl~~l~~~l~-~~~p~L~~a~~~ia~~qIRN~gTvGGNl~~~sp~------sD~~~~L~ALdA~v~l~~~~G~-R~vp~~ 319 (462)
T 2w3s_A 248 TIAALRAFAE-GPHPALAGLLRRFASEQVRQVATIGGNIANGSPI------GDGPPALIAMGASLTLRRGQER-RRMPLE 319 (462)
T ss_dssp BHHHHHHHHT-TTCHHHHHHHTTSSCHHHHTTCBHHHHHHHTCTT------CSHHHHHHHTTCEEEEEBTTBC-CCCBGG
T ss_pred cHHHHHHHHH-HHhHHHHHHHHHhCChhheeeEEcccccccCCCc------chHHHHHHHcCCEEEEEeCCce-EEEEHH
Confidence 9999998843 3332 1 11 12223457899999998743 45555566 6778888883 222111
Q ss_pred cccCCCCCcchhhhhcC-CCCceEEEEEEEEccC
Q 011827 259 LRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHTPP 291 (476)
Q Consensus 259 ~~k~~~g~dL~~~~~Gs-~G~lGIIt~~tl~l~p 291 (476)
|++..++-. ...-.||+++.|...+
T Consensus 320 --------dF~~g~~~t~L~~~Eii~~i~iP~~~ 345 (462)
T 2w3s_A 320 --------DFFLEYRKQDRRPGEFVESVTLPKSA 345 (462)
T ss_dssp --------GGEEETTEESCCTTCEEEEEEEESCC
T ss_pred --------HhhcccccccCCCCcEEEEEEEecCC
Confidence 333332211 1112489999997655
No 31
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=97.80 E-value=2.3e-05 Score=77.28 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=91.8
Q ss_pred ccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCC--cccCCCeEEEEcCC---CCCeEEEeCCCCEEEEecCccH
Q 011827 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (476)
Q Consensus 117 p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~--~~~~~~gvvIdl~~---ln~I~~id~~~~~v~V~aGv~~ 191 (476)
+.-+++|+|.+|+.++++.. +-+..+.||||++... ......+++||+++ |+.| +. +++.++++|++++
T Consensus 5 ~~~~~~P~sl~ea~~ll~~~---~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I-~~--~~~~l~IGA~~t~ 78 (288)
T 1n62_C 5 SFDYHRPKSIADAVALLTKL---GEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGI-RE--EGTDVVIGAMTTQ 78 (288)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCE-EE--ETTEEEEETTCBH
T ss_pred ceEEECcCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Ee--cCCEEEEccCCcH
Confidence 34578999999999998643 3346788999996321 00013479999987 5665 44 4457999999999
Q ss_pred HHHHH--HHHhCCCC-cc------cCCCCCCCccccccccCCCCCCCccccccccccEe-------EEEEEeCCCcEEEe
Q 011827 192 ENLVS--FLDDHGFI-MP------LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGDVIDM 255 (476)
Q Consensus 192 ~~L~~--~l~~~Gl~-l~------~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~-------~~evV~~dG~iv~~ 255 (476)
.+|.+ .+.++ +. +. -.+..-+.+||||+++++.. .+|.+. .+++..++|+ .+.
T Consensus 79 ~~l~~~~~~~~~-~p~L~~a~~~ia~~qiRN~gTiGGnl~~a~p---------~sD~~~~L~Al~A~v~l~~~~G~-r~v 147 (288)
T 1n62_C 79 HALIGSDFLAAK-LPIIRETSLLIADPQIRYMGTIGGNAANGDP---------GNDMPALMQCLGAAYELTGPEGA-RIV 147 (288)
T ss_dssp HHHHHCHHHHHH-CHHHHHHHTTSSCHHHHHHCBHHHHHHSCCT---------TCSHHHHHHHHTCEEEEEETTEE-EEE
T ss_pred HHHhcChHHHHH-HHHHHHHHHHhCCHHHHccccccchhccCCC---------chHHHHHHHHhCcEEEEEeCCcc-EEE
Confidence 99995 45442 21 11 11222245789999998742 345443 5667778884 332
Q ss_pred cCCcccCCCCCcchhhhhc-CCCCceEEEEEEEEccC
Q 011827 256 LGTLRKDNTGYDLKHLFIG-SEGSLGIVTKVSIHTPP 291 (476)
Q Consensus 256 ~~~~~k~~~g~dL~~~~~G-s~G~lGIIt~~tl~l~p 291 (476)
.-. |++....- ....--|||++.|...+
T Consensus 148 ~~~--------df~~g~~~t~l~~~eil~~i~ip~~~ 176 (288)
T 1n62_C 148 AAR--------DYYQGAYFTAIEPGELLTAIRIPVPP 176 (288)
T ss_dssp EHH--------HHEEETTEESCCTTCEEEEEEEECCC
T ss_pred EHH--------HHhcCcccccCCCCCEEEEEEeCCCC
Confidence 211 33222210 01123579999997654
No 32
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=97.68 E-value=7.8e-05 Score=74.02 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=82.1
Q ss_pred cCCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCcc
Q 011827 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCI 190 (476)
Q Consensus 113 ~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~--~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~ 190 (476)
+++.+..+++|+|.+|+.++++.. . ...+.+|||++.... -......+||++++...-.|..+++.++++|+++
T Consensus 6 ~~g~~~~y~~P~sl~ea~~ll~~~---~-~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt 81 (305)
T 3nvz_B 6 FEGERVTWIQASTLKELLDLKAQH---P-EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACA 81 (305)
T ss_dssp EECSSCEEEECCSHHHHHHHHHHC---T-TCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCB
T ss_pred ecCCCeEEEccCCHHHHHHHHHhC---C-CCEEEECccHHHHHHhcCCCCCCEEEECCCChhhcceEECCCeEEEccCCc
Confidence 466778899999999999987643 2 236789999974210 0113468999997543323333456899999999
Q ss_pred HHHHHHHHHhC-------------CCC--cc--cCCCCCCCccccccccCCCCCCCccccccccccEe----EEEEEeCC
Q 011827 191 LENLVSFLDDH-------------GFI--MP--LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLAN 249 (476)
Q Consensus 191 ~~~L~~~l~~~-------------Gl~--l~--~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~----~~evV~~d 249 (476)
+.++.+.+.++ .+. +. -.+..-+.+||||+++++... +.+.--++ .+++..++
T Consensus 82 ~~~l~~~~~~~~~~~p~~~~~~~p~L~~a~~~ia~~qiRN~aTiGGNl~~a~p~------sD~~~~L~AldA~v~l~~~~ 155 (305)
T 3nvz_B 82 LSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASPI------SDLNPVFMASGTKLTIVSRG 155 (305)
T ss_dssp HHHHHHHHHHHHHHSCGGGCHHHHHHHHHHTTSSCHHHHTTCBHHHHHHHCCTT------CSSHHHHHHHTCEEEEEETT
T ss_pred HHHHHHHHHhhhcccchhhhhhhHHHHHHHHHhCCHHHhCeeechheeCCCCCc------hHHHHHHHHcCCEEEEEcCC
Confidence 99999886532 010 11 122233567999999987642 22222222 46777788
Q ss_pred Cc
Q 011827 250 GD 251 (476)
Q Consensus 250 G~ 251 (476)
|+
T Consensus 156 G~ 157 (305)
T 3nvz_B 156 TR 157 (305)
T ss_dssp EE
T ss_pred Cc
Confidence 84
No 33
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=97.17 E-value=0.0004 Score=68.36 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=89.2
Q ss_pred ccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHH
Q 011827 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (476)
Q Consensus 117 p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~--~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L 194 (476)
+--+++|+|.+|+.++++. ..+ ..+.+|||++.... .......+||++++.....|..+++.++++|++++.+|
T Consensus 5 ~f~y~~P~sl~ea~~ll~~--~~~--a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l 80 (288)
T 1t3q_C 5 AFSYRAPASLQEVIQVLAD--DPD--ARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRN 80 (288)
T ss_dssp CCEEECCSSHHHHHHHHHH--CTT--CEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETTEEEEETTCBHHHH
T ss_pred CceEECCCCHHHHHHHHhh--CCC--CEEEeCchhHHHHHhcCCCCCCEEEECCCChhhcCeEEcCCEEEEcCCCcHHHH
Confidence 3457899999999999874 122 35678999953110 00133689999985432223334567999999999999
Q ss_pred HH--HHHhCCCCcc------cCCCCCCCccccccccCCCCCCCccccccccccEe-------EEEEEeCCCcEEEecCCc
Q 011827 195 VS--FLDDHGFIMP------LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGDVIDMLGTL 259 (476)
Q Consensus 195 ~~--~l~~~Gl~l~------~~~g~~~~~tvGG~va~nagG~~~~~yG~~~d~V~-------~~evV~~dG~iv~~~~~~ 259 (476)
.+ .+.++--.+. -++..-+.+|+||+|++... ..|... .+++..++|+ .+..-.
T Consensus 81 ~~~~~~~~~~p~L~~a~~~ias~qiRN~aTiGGNi~~a~p---------~sD~~~~L~Al~A~v~l~~~~g~-R~vp~~- 149 (288)
T 1t3q_C 81 KTDPTVAKCVPILPKVLAHVAHQAVRNRGTLGGSLAHADA---------GAEMPFLMATLGATMYIASSAGV-RSVSAT- 149 (288)
T ss_dssp HHCHHHHHHCTHHHHHHTTSSCHHHHTTCBHHHHHHHTCT---------TCHHHHHHHHTTCEEEEEETTEE-EEEEHH-
T ss_pred hcCHHHHHHHHHHHHHHHHhCCHHHHcceechhhcccCCC---------cHHHHHHHHHcCcEEEEEcCCce-EEEEHH-
Confidence 96 4443211110 12333466899999986532 345544 6677778884 222111
Q ss_pred ccCCCCCcchhhhhc-CCCCceEEEEEEEEccC
Q 011827 260 RKDNTGYDLKHLFIG-SEGSLGIVTKVSIHTPP 291 (476)
Q Consensus 260 ~k~~~g~dL~~~~~G-s~G~lGIIt~~tl~l~p 291 (476)
|++....- ....--|||++.|...+
T Consensus 150 -------dF~~g~~~t~L~~~Eil~~I~iP~~~ 175 (288)
T 1t3q_C 150 -------DFMKGHYFTDLEAGEVLVRVEIPIPA 175 (288)
T ss_dssp -------HHEEETTEESCCTTCEEEEEEEECCS
T ss_pred -------HHhcCcccccCCCCCEEEEEEecCCC
Confidence 22222110 11122579999986543
No 34
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=96.43 E-value=0.00092 Score=66.00 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=65.6
Q ss_pred cEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCc--ccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHHH
Q 011827 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (476)
Q Consensus 118 ~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~--~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L~ 195 (476)
--+++|+|.+|..++++...+. ...+.+|||++.... .......+||++++...-.|..+++.++++|++++.++.
T Consensus 4 f~y~~P~sl~ea~~ll~~~~~~--~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l~ 81 (296)
T 3hrd_C 4 FEFFAPKTLEEAKGLLHQYKDV--PPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEENTIHIGALSTFTQIE 81 (296)
T ss_dssp CEEECCSSHHHHHHHHHHTTTS--CCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSSEEEEETTCBHHHHH
T ss_pred eeEeCCCCHHHHHHHHHhCCCC--CeEEEECCcHHHHHhhcCCCCCCeEEEcccChhhcceEEcCCeEEEccCCcHHHHH
Confidence 4578999999999887643210 245679999973210 011346899999864333344456689999999999997
Q ss_pred HH--HHhC-------CCCcccCCCCCCCccccccccCCC
Q 011827 196 SF--LDDH-------GFIMPLDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 196 ~~--l~~~-------Gl~l~~~~g~~~~~tvGG~va~na 225 (476)
+. +.++ =..+. +|..-+.+|+||+|++..
T Consensus 82 ~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~a~ 119 (296)
T 3hrd_C 82 NHPFIRSHVRALYKAASQVG-SPQIRNLGTIGGNLSTSS 119 (296)
T ss_dssp HCHHHHHHCHHHHHHHHTSS-CHHHHHHCBHHHHHHHTC
T ss_pred hChhhhhHhHHHHHHHHHhC-CHHHhcceehhhhhccCC
Confidence 42 2111 00111 223335679999998643
No 35
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=94.67 E-value=0.012 Score=58.78 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=63.2
Q ss_pred cEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCC--cccCCCeEEEEcCCC---CCeEEEeCCCCEEEEecCccHH
Q 011827 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGSM---NNIITFDKGSGVLVCEAGCILE 192 (476)
Q Consensus 118 ~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~--~~~~~~gvvIdl~~l---n~I~~id~~~~~v~V~aGv~~~ 192 (476)
--+++|+|.+|..++++ +. .-.+.+|||++... ........+||++++ +.| +.++ ++.++++|++++.
T Consensus 7 f~y~~P~sl~ea~~ll~---~~--~a~~lAGGT~l~~~~k~~~~~p~~lIdi~~i~eL~~I-~~~~-~~~l~IGA~vt~~ 79 (324)
T 1rm6_B 7 FRTHRPATLADAVNALA---AE--ATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATI-STLA-DGSLRIGAGATLE 79 (324)
T ss_dssp CEEECCSSHHHHHHHTT---ST--TEEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCE-EECT-TSCEEEETTCBHH
T ss_pred eEEEccCCHHHHHHHHh---CC--CCEEEECchhHHHHHhccCCCCCEEEECCCChhhcce-EECC-CCeEEEccCCcHH
Confidence 34789999999998886 22 24667899986311 000134789999886 555 4432 3368999999999
Q ss_pred HHHHH--HHhC-C------CCcccCCCCCCCccccccccC
Q 011827 193 NLVSF--LDDH-G------FIMPLDLGAKGSCQIGGNVST 223 (476)
Q Consensus 193 ~L~~~--l~~~-G------l~l~~~~g~~~~~tvGG~va~ 223 (476)
+|.+. +.++ . ..+ -+|..-+.+||||+|++
T Consensus 80 ~l~~~~~~~~~~p~L~~a~~~i-as~qIRN~aTiGGNl~~ 118 (324)
T 1rm6_B 80 AIAEHDAIRTTWPALAQAAESV-AGPTHRAAATLGGNLCQ 118 (324)
T ss_dssp HHHHCHHHHHHSHHHHHHHHHS-SCHHHHHHCBHHHHHTC
T ss_pred HHHhChHHHHHHHHHHHHHHHh-CCHHHcceeEeeeeccc
Confidence 99874 2221 0 001 12334456899999975
No 36
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=93.71 E-value=0.095 Score=61.52 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=69.1
Q ss_pred CCCccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCCCcc--cCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccH
Q 011827 114 RGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCIL 191 (476)
Q Consensus 114 ~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g~~~--~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~ 191 (476)
.+.+.-.++|.|.+|+.++++.. .+ -.+.+|||++.-... .....++||++++..+..|..++..++++|++++
T Consensus 230 ~~~~~~~~~P~sl~ea~~ll~~~--~~--a~lvaGgT~l~~~~k~~~~~~~~lIdl~~i~EL~~I~~~~~~l~IGA~vtl 305 (1332)
T 3unc_A 230 EGERVTWIQASTLKELLDLKAQH--PE--AKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACAL 305 (1332)
T ss_dssp ECSSCEEEECCSHHHHHHHHHHC--TT--CEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCBH
T ss_pred cCCceEEEccCCHHHHHHHHhhC--CC--CEEEEeCcHHHHHhhcCCCCCCeEEEcCCCHHhCceEEeCCEEEEEecChH
Confidence 44556789999999999987642 12 256789998631100 0123579999985433333344567999999999
Q ss_pred HHHHHHHHhC----C---------CC--cc--cCCCCCCCccccccccCCC
Q 011827 192 ENLVSFLDDH----G---------FI--MP--LDLGAKGSCQIGGNVSTNA 225 (476)
Q Consensus 192 ~~L~~~l~~~----G---------l~--l~--~~~g~~~~~tvGG~va~na 225 (476)
.+|.+.+.+. . +. +. -.+..-+.+||||+|++..
T Consensus 306 ~~l~~~l~~~~~~~~~~~~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 356 (1332)
T 3unc_A 306 SSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITAS 356 (1332)
T ss_dssp HHHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSSCHHHHHHCBHHHHHHHCC
T ss_pred HHHHHHHHHHhhhccccccchhHHHHHHHHHhCCHHHhceeeccceecccC
Confidence 9999876432 0 00 11 1222334578999998865
No 37
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=84.57 E-value=0.47 Score=55.81 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=65.0
Q ss_pred ccEEEecCCHHHHHHHHHHhhhCCCeEEEeCCCCCCCC--CcccCCCeEEEEcCCCCCeEEEeCCCCEEEEecCccHHHH
Q 011827 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVG--GSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (476)
Q Consensus 117 p~~vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~g--~~~~~~~gvvIdl~~ln~I~~id~~~~~v~V~aGv~~~~L 194 (476)
-...++|.|.+|+.++...-- +.+ ...|||.+.- ..-...-.++||+.+...+..+...+..++++|++++.++
T Consensus 240 ~~~w~~P~tl~el~~l~~~~p--~a~--lvaGnT~~gl~~~~~~~~~~~~I~~~~v~EL~~i~~~~~~l~IGA~vtls~~ 315 (1335)
T 3zyv_A 240 RTTWIAPGTLNDLLELKMKHP--SAP--LVIGNTYLGLHMKFTDVSYPIIISPARILELFVVTNTKQGLTLGTGLSLTQV 315 (1335)
T ss_dssp SCEEEECSSHHHHHHHHHHCT--TSC--BCSSCTTHHHHHC--CCCCSEEECCTTCGGGSCEECCTTEEEEETTCBHHHH
T ss_pred CceEecCCCHHHHHHHHHHCC--CCe--EEEecccceeeEeecCCCCCeEEEcCcchhHheEEecCCEEEEcccCcHHHH
Confidence 345789999999999865322 223 3467776410 0011123589998875544445556677999999999999
Q ss_pred HHHHHhC----C----CCc-------cc--CCCCCCCccccccccCC
Q 011827 195 VSFLDDH----G----FIM-------PL--DLGAKGSCQIGGNVSTN 224 (476)
Q Consensus 195 ~~~l~~~----G----l~l-------~~--~~g~~~~~tvGG~va~n 224 (476)
.+.|.+. + ..+ .. .+...+.+|+||+|++.
T Consensus 316 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~fAs~qIRN~aTigGNI~~a 362 (1335)
T 3zyv_A 316 KNVLSDVVSRLPKEKTQIYCALLKQLKTLAGQQIRNVASLGGHIISR 362 (1335)
T ss_dssp HHHHHHHHTTSCTTTCTTHHHHHHHHTTSSCHHHHHHCBHHHHHHTC
T ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHHhcchhhcCcccccCceecc
Confidence 9888642 1 001 00 12223558899999864
No 38
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=76.42 E-value=1.2 Score=45.48 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=34.8
Q ss_pred ceEEEEEEcCcchHHHHHHHHHHHhh-cC---C-EEEEeecCCCcEEE
Q 011827 419 VYKYDLSLPVEKMYDLVEKMRQRLGE-TA---K-VIGYGHLGDGNLHL 461 (476)
Q Consensus 419 ~~~~D~~VP~~~l~~~~~~~~~~~~~-~g---~-~~~~GH~gdGnlH~ 461 (476)
.+.+|++||+++++++++++++.+++ +. . .+.|||+++|.||+
T Consensus 290 ~~~~e~avP~e~~~~~l~~l~~~~~~~~~~~~~v~~r~~~~~~~~Ls~ 337 (422)
T 2vfr_A 290 ELQSEYLMPREHALAALHAMDAIRETLAPVLQTCEIRTVAADAQWLSP 337 (422)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHTHHHHGGGEEEEEEEEECCBCSTTCT
T ss_pred EEEEEEEEEHHHHHHHHHHHHHHHHhCCCceeeEEEEeecCCccccCC
Confidence 45569999999999999999999987 22 1 15599999997765
No 39
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=45.06 E-value=38 Score=28.14 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=35.8
Q ss_pred HhhccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeE-EEeCCC
Q 011827 103 LAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (476)
Q Consensus 103 ~~y~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v-~~~GgG 149 (476)
..+...| ...+.|..|+...|++|+.++.+.|.+.|+|. .++=+|
T Consensus 43 ~~~~~~W--~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 88 (120)
T 1xty_A 43 KEWLNEW--LHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAG 88 (120)
T ss_dssp HHHHHHH--HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4455556 46789999999999999999999999999985 344444
No 40
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=43.25 E-value=31 Score=28.91 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=34.6
Q ss_pred ccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeE-EEeCCCC
Q 011827 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGNT 150 (476)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v-~~~GgGt 150 (476)
...| ...|.+..|++..|++|+.++.+.|++.|+|. .++-+|.
T Consensus 40 l~~W--~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I~DAG~ 83 (123)
T 1rzw_A 40 RRKW--LDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGL 83 (123)
T ss_dssp HHHT--GGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred HHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3455 44688999999999999999999999999985 4555554
No 41
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=33.26 E-value=64 Score=26.77 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=33.7
Q ss_pred ccccccccCCCccEEEecCCHHHHHHHHHHhhhCCCeE-EEeCCC
Q 011827 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (476)
Q Consensus 106 ~~d~~~~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v-~~~GgG 149 (476)
...| ...+.|..|++..|++|+.++.+.|.+.|+|. .++=.|
T Consensus 47 ~~~W--~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 89 (121)
T 1wn2_A 47 FEAW--FREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAG 89 (121)
T ss_dssp HHHH--HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred HHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3455 46789999999999999999999999999985 344443
No 42
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=32.33 E-value=79 Score=24.40 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=35.4
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|..+|. .+|-|.++.+...+........++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 30 EDVLRLFQ----PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHH
Confidence 46766663 567789988877664445677889999999999888765
No 43
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=31.51 E-value=77 Score=24.55 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=36.0
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
-+|..+|. .+|-|.++.+...+........++.|.+.+++.+|+..+
T Consensus 44 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 44 ADIQELFA----EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp HHHHHHHH----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 36766664 577888998887774455677889999999999888765
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.40 E-value=83 Score=24.04 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=35.3
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|..+|. .+|-|.++.+...+........++.|.+.+++.+|+..+
T Consensus 32 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 32 EELEEICK----AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 78 (100)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh
Confidence 46766663 467788988877664445677889999999998888765
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=31.34 E-value=1.1e+02 Score=23.81 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=41.9
Q ss_pred CCCcEEEecCCcccCCCCCcchhhhhcCCCCceEEEEEEEEccCCC-CceeEEEeecCCHHHHHHHHHHH
Q 011827 248 ANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 248 ~dG~iv~~~~~~~k~~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|+-+-++ .++.+.+.-+|..+|. .+|-|.++.+-..+.. ......++.|.+.+++.+|+..+
T Consensus 17 ~~gt~lfV~-nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 17 FQGTNLIVN-YLPQNMTQDELRSLFS----SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CCCSEEEEE-SCCTTCCHHHHHHHHH----TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEe-CCCCCCCHHHHHHHHH----hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 455544443 2333334447777774 4677888888665543 34567889999999999988765
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=28.61 E-value=95 Score=24.71 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=36.6
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCC-CceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|..+| ..+|-|.++.+-..+.. ......++.|.+.+++.+|+..+
T Consensus 21 ~~L~~~F----~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 21 TFLKDMC----RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp HHHHHHH----TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 4677766 46788999998777763 45677889999999999988766
No 47
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=28.31 E-value=52 Score=27.14 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.4
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhhCCCeE-EEeCCCC
Q 011827 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGNT 150 (476)
Q Consensus 112 ~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v-~~~GgGt 150 (476)
...+.|..|++..|++|+.++.+.|.+.|+|. .++-.|+
T Consensus 47 ~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~ 86 (117)
T 1rlk_A 47 YDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGY 86 (117)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCS
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36789999999999999999999999999985 4444443
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=27.93 E-value=81 Score=23.74 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=35.4
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
-+|..+|. .+|-|.++.+...+........++.|.+.+++.+|+..+
T Consensus 31 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 31 EILYELFL----QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 46766663 467889988877665445667889999999998887765
No 49
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=27.76 E-value=87 Score=24.71 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=30.6
Q ss_pred CCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 277 G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
+.+|-|+++.+-..+........++.|.+.+++.+|+..+
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 4578899998854443445677889999999999988766
No 50
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.08 E-value=1e+02 Score=24.05 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.5
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|..+|. .+|-|.++.+...+........++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~f~----~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 30 KKLKEVFS----MAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 46766663 567888888877665445667889999999999988765
No 51
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=25.83 E-value=95 Score=24.60 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=41.2
Q ss_pred cchhhhhcCCCCceEEEEEEEEccCC--CCceeEEEeecCCHHHHHHHHHHHHHH-cCCceeEEEEeCH
Q 011827 267 DLKHLFIGSEGSLGIVTKVSIHTPPK--LSSVNLAFLACKDYFSCQKLLREAKRK-LGEILSAFEFLDN 332 (476)
Q Consensus 267 dL~~~~~Gs~G~lGIIt~~tl~l~p~--p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~E~~d~ 332 (476)
||...+ +.+|-|+++.+-..|. +......++.|.+.+++.+|+..+... ....+-.+++.+.
T Consensus 29 dl~~~f----~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 29 ETKEEC----EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHG----GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHH----HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 555554 4688899998865543 234567888999999999998876321 2233445666554
No 52
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=25.39 E-value=53 Score=27.02 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=31.4
Q ss_pred ccCCCccEEEecCCHHHHHHHHHHhhhCCCeE-EEeCCC
Q 011827 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (476)
Q Consensus 112 ~~~~~p~~vv~P~s~~eV~~iv~~a~~~~~~v-~~~GgG 149 (476)
...+.|..|++..|++|+.++.+.|.+.|+|. .++-+|
T Consensus 45 ~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~DAG 83 (115)
T 2zv3_A 45 LREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAG 83 (115)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35789999999999999999999999999985 334443
No 53
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=24.37 E-value=46 Score=33.13 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhhhCCCeEEEe
Q 011827 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (476)
Q Consensus 124 ~s~~eV~~iv~~a~~~~~~v~~~ 146 (476)
-|.+|+.+|+++|+++++.|+|-
T Consensus 92 YT~~di~eiv~YA~~rgI~VIPE 114 (367)
T 1yht_A 92 LSYRQLDDIKAYAKAKGIELIPE 114 (367)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHHHcCCEEEEe
Confidence 58999999999999999999883
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.40 E-value=95 Score=23.85 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=33.5
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|..+|. .+|-|.++.+...+.. .....++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~f~----~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 30 PDLRQMFG----QFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKL 75 (103)
T ss_dssp HHHHHHGG----GTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHh
Confidence 46766663 4677888887665443 4557888999999999888765
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.06 E-value=1.4e+02 Score=22.82 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=33.8
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
-+|..+|. .+|-|.++.+... ........++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~F~----~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l 75 (103)
T 2d9p_A 30 ERLRKAFS----PFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 75 (103)
T ss_dssp HHHHHTTT----TTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHh
Confidence 36666653 5777888887665 3345667889999999999988765
No 56
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.84 E-value=1.6e+02 Score=23.00 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=34.5
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|..+| ..+|-|.++.+...+........++.|.+.+++.+|+..+
T Consensus 40 ~~l~~~F----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 86 (114)
T 1x5o_A 40 QELENML----KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 86 (114)
T ss_dssp HHHHHTT----TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3566665 3577788888877664445667889999999998888765
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=21.39 E-value=1.5e+02 Score=21.37 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=34.1
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCC-CceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+|...|. .+|-|.++.+...+.. ......++.|.+.+++.+|+..+
T Consensus 16 ~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 16 ETLRNAFK----DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp HHHHHHHT----TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 36666663 4677888888766543 34567888999999998888765
No 58
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.33 E-value=1.7e+02 Score=21.83 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=34.9
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCC-CceeEEEeecCCHHHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
-+|..+|. .+|-|.++.+...+.. ......++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~f~----~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 30 RDLREVFS----KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp HHHHHHHH----TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 36766664 4677888888766654 44567888999999999888765
No 59
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.16 E-value=74 Score=25.15 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=26.2
Q ss_pred chhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHH
Q 011827 268 LKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLR 314 (476)
Q Consensus 268 L~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~ 314 (476)
|...+......+|-|+.+++-.-. .++.|.+-+++.+|+.
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS 67 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh
Confidence 444444444568878888764422 6788999888777664
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=21.02 E-value=81 Score=24.89 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=35.6
Q ss_pred CCCcchhhhhcCCCCceEEEEEEEEccCCC-CceeEEEeecCCHHHHHHHHHHH
Q 011827 264 TGYDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 264 ~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
+..||..+|. .+|-|.++.+...+.. ......++.|.+.+++.+|+..+
T Consensus 38 t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 87 (115)
T 2cpz_A 38 GDQDLLQMFM----PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87 (115)
T ss_dssp CHHHHHHHHG----GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHH----hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHc
Confidence 3346777764 5677888888766643 44567889999999999988765
No 61
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=20.63 E-value=1.3e+02 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=32.0
Q ss_pred CCCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 263 NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 263 ~~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
.+..||..+|. .+|-|+.+.+... ...++.|.+.+++.+|+..+
T Consensus 28 ~t~~~l~~~F~----~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 28 GSWQDLKDHMR----EAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKL 71 (115)
T ss_dssp CCTTHHHHHHG----GGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----hcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHh
Confidence 34457877764 4677888876322 56788999999999988765
No 62
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.63 E-value=1.2e+02 Score=23.70 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=34.1
Q ss_pred CcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHH
Q 011827 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLR 314 (476)
Q Consensus 266 ~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~ 314 (476)
-+|..+|. .+|-|+++.+...+........++.|.+.+++..|+.
T Consensus 26 ~~L~~~F~----~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 26 DDIKEWLE----DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp HHHHHHHH----TSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred HHHHHHHh----hcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 46666663 5788999998877664456778899999999888765
No 63
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=20.32 E-value=1e+02 Score=24.49 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=34.4
Q ss_pred CCCcchhhhhcCCCCceEEEEEEEEccCCCCceeEEEeecCCHHHHHHHHHHH
Q 011827 264 TGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (476)
Q Consensus 264 ~g~dL~~~~~Gs~G~lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (476)
+.-+|..+|. .+|-|.++.+-..+. ......++.|.+.+++.+|+..+
T Consensus 18 te~~L~~~F~----~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 18 DNKALYDTFS----AFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CHHHHHHHHG----GGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHh----ccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHc
Confidence 3347777764 578888888755432 23457789999999999988765
Done!