Query 011828
Match_columns 476
No_of_seqs 74 out of 76
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.0 1.6E-05 5.3E-10 72.1 35.1 127 90-217 18-144 (284)
2 1c1g_A Tropomyosin; contractIl 98.9 1.9E-05 6.5E-10 71.5 33.0 15 304-318 237-251 (284)
3 1i84_S Smooth muscle myosin he 98.4 6.6E-07 2.2E-11 102.7 9.5 113 112-224 856-974 (1184)
4 1i84_S Smooth muscle myosin he 98.3 2.2E-06 7.6E-11 98.3 10.8 111 111-222 883-993 (1184)
5 3na7_A HP0958; flagellar bioge 97.4 0.037 1.3E-06 53.3 22.0 160 115-292 13-174 (256)
6 3o0z_A RHO-associated protein 97.3 0.042 1.4E-06 51.1 20.2 75 111-186 4-78 (168)
7 3na7_A HP0958; flagellar bioge 97.3 0.05 1.7E-06 52.4 21.5 45 178-222 40-84 (256)
8 2v71_A Nuclear distribution pr 97.2 0.05 1.7E-06 51.4 20.3 127 89-222 7-133 (189)
9 2v71_A Nuclear distribution pr 97.2 0.019 6.5E-07 54.2 17.2 25 105-129 41-65 (189)
10 3o0z_A RHO-associated protein 96.6 0.24 8.2E-06 46.0 19.2 130 152-288 9-138 (168)
11 3vkg_A Dynein heavy chain, cyt 96.5 0.52 1.8E-05 59.9 26.7 91 190-280 2013-2103(3245)
12 2dfs_A Myosin-5A; myosin-V, in 96.5 0.11 3.6E-06 59.9 19.4 127 151-290 923-1052(1080)
13 2efr_A General control protein 96.5 0.36 1.2E-05 44.2 19.2 120 97-224 26-145 (155)
14 2dfs_A Myosin-5A; myosin-V, in 96.4 0.038 1.3E-06 63.6 15.1 73 234-317 977-1050(1080)
15 3vkg_A Dynein heavy chain, cyt 96.4 0.77 2.6E-05 58.4 27.4 96 237-340 2011-2106(3245)
16 2fxo_A Myosin heavy chain, car 95.9 0.42 1.4E-05 41.9 16.2 112 150-282 14-125 (129)
17 2jee_A YIIU; FTSZ, septum, coi 95.3 0.12 4.2E-06 42.8 9.7 52 237-288 24-75 (81)
18 3ol1_A Vimentin; structural ge 94.8 0.33 1.1E-05 42.2 11.7 86 88-188 16-101 (119)
19 2jee_A YIIU; FTSZ, septum, coi 94.6 0.29 9.8E-06 40.6 10.1 66 135-200 6-78 (81)
20 2efr_A General control protein 94.5 2.9 9.9E-05 38.3 22.5 44 237-280 102-145 (155)
21 2fxo_A Myosin heavy chain, car 94.3 2.5 8.5E-05 36.9 18.0 39 111-150 11-49 (129)
22 2ocy_A RAB guanine nucleotide 94.0 3.7 0.00013 37.6 19.0 33 192-224 52-84 (154)
23 3u1c_A Tropomyosin alpha-1 cha 93.8 2.6 8.9E-05 35.6 14.7 50 138-187 12-61 (101)
24 3u59_A Tropomyosin beta chain; 93.6 2 7E-05 36.0 13.6 52 237-288 48-99 (101)
25 3q8t_A Beclin-1; autophagy, AT 93.4 2.3 7.7E-05 35.8 13.5 77 179-255 6-82 (96)
26 2v66_B Nuclear distribution pr 92.9 2.8 9.7E-05 36.5 13.7 67 113-180 35-101 (111)
27 3u1c_A Tropomyosin alpha-1 cha 92.3 4.6 0.00016 34.0 14.6 20 197-216 78-97 (101)
28 3tnu_B Keratin, type II cytosk 91.9 3.3 0.00011 36.1 13.0 89 116-215 32-120 (129)
29 3tnu_A Keratin, type I cytoske 91.8 2.6 9E-05 36.8 12.4 90 115-215 33-122 (131)
30 3swk_A Vimentin; cytoskeleton, 91.7 1.4 4.9E-05 36.4 10.0 59 153-211 25-83 (86)
31 3u59_A Tropomyosin beta chain; 91.2 5.9 0.0002 33.2 14.7 27 138-164 12-38 (101)
32 3ol1_A Vimentin; structural ge 91.2 5.5 0.00019 34.5 13.6 89 108-211 15-103 (119)
33 2ocy_A RAB guanine nucleotide 91.1 9.1 0.00031 35.0 16.2 19 107-125 14-32 (154)
34 3ghg_A Fibrinogen alpha chain; 91.0 3.9 0.00013 44.0 14.8 42 237-278 114-155 (562)
35 3bas_A Myosin heavy chain, str 90.5 3.2 0.00011 34.3 11.0 66 156-221 21-86 (89)
36 3q8t_A Beclin-1; autophagy, AT 89.8 8.1 0.00028 32.4 13.9 47 116-163 7-53 (96)
37 3bas_A Myosin heavy chain, str 89.6 5 0.00017 33.1 11.5 75 110-185 11-85 (89)
38 3swk_A Vimentin; cytoskeleton, 89.3 3.2 0.00011 34.2 10.1 73 116-189 3-82 (86)
39 3s4r_A Vimentin; alpha-helix, 88.5 6.2 0.00021 33.0 11.4 38 175-212 54-91 (93)
40 3hnw_A Uncharacterized protein 88.2 1.7 5.8E-05 38.8 8.2 39 250-288 92-130 (138)
41 1m1j_C Fibrinogen gamma chain; 87.6 4 0.00014 42.4 11.8 105 175-292 25-129 (409)
42 2v4h_A NF-kappa-B essential mo 87.1 7.1 0.00024 34.0 11.1 47 241-287 63-109 (110)
43 3a7p_A Autophagy protein 16; c 87.0 3.8 0.00013 37.5 9.8 13 313-325 119-131 (152)
44 3s4r_A Vimentin; alpha-helix, 86.3 5.3 0.00018 33.4 9.7 40 153-192 53-92 (93)
45 3hnw_A Uncharacterized protein 86.3 5.6 0.00019 35.5 10.4 20 80-100 28-47 (138)
46 3cvf_A Homer-3, homer protein 86.0 4.1 0.00014 33.6 8.6 53 153-205 24-76 (79)
47 3tnu_B Keratin, type II cytosk 85.5 3.7 0.00013 35.7 8.8 95 231-325 12-110 (129)
48 1z2t_A Anchor peptide Ser65-Le 85.2 0.29 1E-05 32.0 1.1 13 453-465 4-16 (26)
49 3trt_A Vimentin; cytoskeleton, 85.1 6.9 0.00024 30.8 9.4 64 193-273 11-75 (77)
50 3mq9_A Bone marrow stromal ant 85.0 21 0.00071 36.2 15.3 49 172-224 368-416 (471)
51 3oja_A Leucine-rich immune mol 84.8 12 0.00042 38.0 13.6 42 180-221 424-465 (487)
52 3a7p_A Autophagy protein 16; c 84.5 8.3 0.00028 35.3 10.8 55 180-234 78-132 (152)
53 3tnu_A Keratin, type I cytoske 84.5 3.2 0.00011 36.3 7.9 24 302-325 89-112 (131)
54 2v66_B Nuclear distribution pr 83.8 21 0.00072 31.0 16.4 11 227-237 91-101 (111)
55 3ghg_A Fibrinogen alpha chain; 82.6 8.9 0.0003 41.3 11.6 108 59-187 40-148 (562)
56 1fxk_A Prefoldin; archaeal pro 82.3 15 0.00052 30.0 10.8 20 261-280 79-98 (107)
57 1l8d_A DNA double-strand break 82.3 20 0.00069 29.7 13.0 32 193-224 12-43 (112)
58 2zqm_A Prefoldin beta subunit 82.2 20 0.00069 29.7 11.7 30 253-282 76-105 (117)
59 1ic2_A Tropomyosin alpha chain 82.1 18 0.00062 29.0 10.9 28 136-163 7-34 (81)
60 3mq7_A Bone marrow stromal ant 81.8 27 0.00092 30.8 13.1 68 138-215 42-109 (121)
61 1gk4_A Vimentin; intermediate 81.4 20 0.00067 29.1 10.9 68 145-215 4-71 (84)
62 1m1j_B Fibrinogen beta chain; 81.3 44 0.0015 35.3 16.3 18 111-128 98-115 (464)
63 3cve_A Homer protein homolog 1 80.0 18 0.00062 29.2 10.0 52 153-204 18-69 (72)
64 4gkw_A Spindle assembly abnorm 79.3 36 0.0012 30.8 21.1 47 237-283 116-162 (167)
65 3mq9_A Bone marrow stromal ant 76.7 45 0.0015 33.7 14.4 36 190-225 435-470 (471)
66 1m1j_B Fibrinogen beta chain; 76.7 59 0.002 34.4 15.5 55 59-122 76-130 (464)
67 1go4_E MAD1 (mitotic arrest de 76.0 12 0.00043 31.9 8.4 75 255-330 13-94 (100)
68 2zqm_A Prefoldin beta subunit 75.8 27 0.00094 28.8 10.5 41 239-279 69-109 (117)
69 1x8y_A Lamin A/C; structural p 72.6 23 0.00078 29.0 9.0 64 149-215 10-73 (86)
70 1wt6_A Myotonin-protein kinase 72.4 14 0.00048 30.6 7.5 65 156-227 10-74 (81)
71 2e7s_A RAB guanine nucleotide 70.9 3.6 0.00012 37.0 4.0 49 140-188 30-78 (135)
72 1m1j_C Fibrinogen gamma chain; 70.9 67 0.0023 33.3 14.1 7 328-334 244-250 (409)
73 3nmd_A CGMP dependent protein 70.4 9.8 0.00034 30.9 6.1 44 238-281 24-67 (72)
74 3ghg_C Fibrinogen gamma chain; 69.7 53 0.0018 34.3 13.0 101 175-288 25-125 (411)
75 2v4h_A NF-kappa-B essential mo 69.2 57 0.002 28.4 11.3 19 199-217 84-102 (110)
76 3cve_A Homer protein homolog 1 68.8 38 0.0013 27.4 9.2 33 197-229 6-38 (72)
77 3i00_A HIP-I, huntingtin-inter 68.5 41 0.0014 29.4 10.2 17 115-131 17-33 (120)
78 3mq7_A Bone marrow stromal ant 68.2 63 0.0021 28.5 11.1 44 186-229 59-102 (121)
79 1deq_A Fibrinogen (alpha chain 68.2 82 0.0028 32.7 13.8 93 58-170 42-134 (390)
80 3c9i_A Tail needle protein GP2 66.4 71 0.0024 30.8 12.0 47 184-230 105-151 (242)
81 3a7o_A Autophagy protein 16; c 65.8 45 0.0015 27.1 9.0 42 178-219 33-74 (75)
82 3vmx_A Voltage-gated hydrogen 64.7 20 0.00068 27.1 6.3 41 239-279 3-43 (48)
83 3jsv_C NF-kappa-B essential mo 64.3 50 0.0017 28.0 9.4 16 148-163 15-30 (94)
84 1gd2_E Transcription factor PA 63.9 12 0.00043 29.9 5.5 44 244-287 26-69 (70)
85 1fxk_C Protein (prefoldin); ar 63.9 66 0.0022 27.4 10.6 43 245-287 86-128 (133)
86 1deq_A Fibrinogen (alpha chain 63.3 1.3E+02 0.0046 31.1 14.2 22 242-263 136-157 (390)
87 1m1j_A Fibrinogen alpha subuni 62.8 1.6E+02 0.0055 31.4 14.9 43 250-292 114-156 (491)
88 1x79_B RAB GTPase binding effe 62.7 78 0.0027 27.5 13.0 58 174-231 42-103 (112)
89 3qh9_A Liprin-beta-2; coiled-c 62.1 31 0.0011 28.5 7.6 31 188-218 23-53 (81)
90 2oqq_A Transcription factor HY 61.6 19 0.00065 26.4 5.5 39 240-278 3-41 (42)
91 3jsv_C NF-kappa-B essential mo 60.8 56 0.0019 27.7 9.2 32 258-289 58-89 (94)
92 2b9c_A Striated-muscle alpha t 60.8 94 0.0032 27.8 13.7 49 110-166 49-97 (147)
93 1d7m_A Cortexillin I; coiled-c 60.7 77 0.0026 26.9 15.4 35 145-179 21-55 (101)
94 1f5n_A Interferon-induced guan 60.5 1.9E+02 0.0064 31.2 20.3 28 206-233 513-544 (592)
95 1wt6_A Myotonin-protein kinase 59.9 30 0.001 28.6 7.2 45 237-281 28-72 (81)
96 3cvf_A Homer-3, homer protein 59.8 44 0.0015 27.5 8.1 33 196-228 11-43 (79)
97 1f5n_A Interferon-induced guan 59.5 1.9E+02 0.0066 31.1 15.9 37 151-187 482-518 (592)
98 2no2_A HIP-I, huntingtin-inter 59.0 84 0.0029 26.8 15.5 48 177-224 54-101 (107)
99 3mov_A Lamin-B1; LMNB1, B-type 59.0 42 0.0014 28.1 8.1 63 150-215 20-82 (95)
100 4emc_A Monopolin complex subun 58.4 42 0.0014 31.7 8.8 53 239-291 12-64 (190)
101 3he5_B Synzip2; heterodimeric 57.8 36 0.0012 25.3 6.5 42 253-294 9-50 (52)
102 3l4q_C Phosphatidylinositol 3- 57.8 1.2E+02 0.0041 28.1 16.3 118 112-230 9-149 (170)
103 1fxk_A Prefoldin; archaeal pro 57.1 77 0.0026 25.7 11.1 38 240-277 65-102 (107)
104 3qh9_A Liprin-beta-2; coiled-c 56.9 76 0.0026 26.3 9.0 52 175-226 24-75 (81)
105 1joc_A EEA1, early endosomal a 56.9 27 0.00092 30.3 6.9 36 225-260 3-38 (125)
106 3iv1_A Tumor susceptibility ge 56.6 81 0.0028 25.8 9.3 44 237-280 29-72 (78)
107 3s9g_A Protein hexim1; cyclin 56.1 42 0.0014 28.8 7.6 53 229-281 33-92 (104)
108 2w83_C C-JUN-amino-terminal ki 56.0 41 0.0014 27.6 7.2 48 244-291 27-74 (77)
109 3ghg_B Fibrinogen beta chain; 55.3 2.1E+02 0.0073 30.3 15.1 42 175-216 82-123 (461)
110 3mxz_A Tubulin-specific chaper 55.2 1E+02 0.0036 26.7 10.7 35 197-231 14-49 (116)
111 1x79_B RAB GTPase binding effe 55.0 1.1E+02 0.0036 26.7 12.7 30 195-224 3-32 (112)
112 3c9i_A Tail needle protein GP2 54.9 1.5E+02 0.0053 28.5 12.5 83 118-200 66-149 (242)
113 2yko_A LINE-1 ORF1P; RNA-bindi 54.2 45 0.0016 32.4 8.6 86 243-332 2-94 (233)
114 1p9i_A Cortexillin I/GCN4 hybr 53.9 9.6 0.00033 25.8 2.7 27 308-334 3-29 (31)
115 2oqq_A Transcription factor HY 53.7 39 0.0013 24.8 6.0 25 190-214 16-40 (42)
116 1ci6_A Transcription factor AT 52.3 43 0.0015 25.9 6.6 34 191-224 23-56 (63)
117 2i1j_A Moesin; FERM, coiled-co 51.9 9.9 0.00034 40.8 3.9 70 135-204 370-439 (575)
118 2eqb_B RAB guanine nucleotide 51.1 1.1E+02 0.0039 25.9 12.7 20 260-279 75-94 (97)
119 3a2a_A Voltage-gated hydrogen 51.0 27 0.00094 27.1 5.1 42 238-279 9-50 (58)
120 1jcd_A Major outer membrane li 50.3 39 0.0013 25.7 5.9 40 255-294 5-44 (52)
121 3cl3_D NF-kappa-B essential mo 49.9 46 0.0016 29.7 7.2 101 118-236 7-107 (130)
122 2wt7_A Proto-oncogene protein 49.3 49 0.0017 25.4 6.5 30 251-280 27-56 (63)
123 3htk_A Structural maintenance 49.1 79 0.0027 23.4 7.8 25 256-280 28-52 (60)
124 1qsd_A Protein (beta-tubulin b 48.8 71 0.0024 27.2 8.0 30 198-227 11-40 (106)
125 1go4_E MAD1 (mitotic arrest de 48.5 23 0.00078 30.3 4.9 32 192-223 13-44 (100)
126 2lw1_A ABC transporter ATP-bin 48.5 1.1E+02 0.0036 24.8 9.2 26 178-203 57-82 (89)
127 3qne_A Seryl-tRNA synthetase, 47.8 54 0.0018 34.8 8.7 37 250-286 74-110 (485)
128 3nmd_A CGMP dependent protein 47.7 61 0.0021 26.2 7.0 47 242-288 21-67 (72)
129 1t2k_D Cyclic-AMP-dependent tr 47.5 54 0.0018 24.8 6.5 27 251-277 26-52 (61)
130 4h22_A Leucine-rich repeat fli 47.4 1E+02 0.0034 26.6 8.7 16 239-254 36-51 (103)
131 3ghg_B Fibrinogen beta chain; 46.8 2.5E+02 0.0087 29.7 13.4 25 140-164 100-124 (461)
132 3cl3_D NF-kappa-B essential mo 46.2 52 0.0018 29.4 6.9 55 200-264 18-72 (130)
133 2i1j_A Moesin; FERM, coiled-co 45.7 23 0.00078 38.0 5.5 22 172-193 337-358 (575)
134 3swf_A CGMP-gated cation chann 45.7 89 0.003 25.4 7.7 48 174-224 4-51 (74)
135 1ses_A Seryl-tRNA synthetase; 45.6 1.7E+02 0.0058 30.0 11.9 28 197-224 70-97 (421)
136 1ses_A Seryl-tRNA synthetase; 45.0 92 0.0032 32.0 9.8 69 213-287 36-104 (421)
137 2w6a_A ARF GTPase-activating p 44.6 55 0.0019 25.8 6.0 36 193-228 22-57 (63)
138 2w6a_A ARF GTPase-activating p 44.2 1.1E+02 0.0039 24.0 7.7 34 177-210 27-60 (63)
139 1jnm_A Proto-oncogene C-JUN; B 44.2 38 0.0013 25.8 5.2 24 264-287 32-55 (62)
140 1l8d_A DNA double-strand break 43.6 1.3E+02 0.0046 24.6 13.3 24 140-163 22-45 (112)
141 2xnx_M M protein, M1-BC1; cell 43.5 63 0.0022 29.4 7.2 40 178-217 67-106 (146)
142 3i00_A HIP-I, huntingtin-inter 43.5 1.4E+02 0.0047 26.0 9.2 22 176-197 14-35 (120)
143 2zdi_C Prefoldin subunit alpha 42.8 22 0.00076 31.3 4.2 45 245-289 96-140 (151)
144 3efg_A Protein SLYX homolog; x 42.6 70 0.0024 25.8 6.7 39 251-289 18-56 (78)
145 3uux_B Mitochondrial division 41.7 1.8E+02 0.0061 28.4 10.5 13 118-130 154-166 (242)
146 3efg_A Protein SLYX homolog; x 41.1 79 0.0027 25.5 6.8 51 239-289 13-63 (78)
147 1x8y_A Lamin A/C; structural p 40.6 1.3E+02 0.0045 24.3 8.2 20 200-219 5-24 (86)
148 2dq3_A Seryl-tRNA synthetase; 40.4 57 0.0019 33.6 7.3 33 254-286 75-107 (425)
149 3swy_A Cyclic nucleotide-gated 39.8 1.1E+02 0.0039 22.6 7.1 44 174-220 2-45 (46)
150 1lwu_C Fibrinogen gamma chain; 39.3 58 0.002 32.8 7.0 37 253-289 11-47 (323)
151 3iox_A AGI/II, PA; alpha helix 39.1 3.9E+02 0.013 28.6 15.5 17 410-426 326-342 (497)
152 1gmj_A ATPase inhibitor; coile 39.0 1.3E+02 0.0046 24.9 7.9 27 262-288 52-78 (84)
153 2w83_C C-JUN-amino-terminal ki 39.0 1.6E+02 0.0055 24.1 8.6 51 172-222 18-68 (77)
154 1jnm_A Proto-oncogene C-JUN; B 38.9 47 0.0016 25.3 4.9 37 247-283 22-58 (62)
155 1deb_A APC protein, adenomatou 38.6 1.1E+02 0.0038 23.4 6.7 41 241-281 11-51 (54)
156 1h7c_A Tubulin-specific chaper 38.4 1.8E+02 0.0063 24.6 10.1 35 197-231 13-48 (108)
157 3ghg_C Fibrinogen gamma chain; 38.3 3.6E+02 0.012 28.0 14.6 28 137-164 40-67 (411)
158 1wle_A Seryl-tRNA synthetase; 38.1 3.6E+02 0.012 28.5 13.1 28 197-224 122-149 (501)
159 3hhm_B NISH2 P85alpha; PI3KCA, 38.1 2.9E+02 0.01 28.1 12.1 122 87-214 142-263 (373)
160 2no2_A HIP-I, huntingtin-inter 37.6 1.9E+02 0.0065 24.6 15.2 35 254-288 68-102 (107)
161 2oto_A M protein; helical coil 37.4 2.1E+02 0.0073 25.1 17.8 44 175-218 34-77 (155)
162 1wle_A Seryl-tRNA synthetase; 37.1 1.8E+02 0.0062 30.8 10.7 39 249-287 118-156 (501)
163 1kd8_B GABH BLL, GCN4 acid bas 36.6 53 0.0018 23.4 4.4 30 137-166 3-32 (36)
164 4emc_A Monopolin complex subun 36.3 92 0.0031 29.4 7.3 13 410-422 128-140 (190)
165 3a7o_A Autophagy protein 16; c 36.2 1.6E+02 0.0055 23.9 7.7 24 255-278 47-70 (75)
166 2wt7_B Transcription factor MA 36.1 1.9E+02 0.0065 24.1 10.5 28 136-163 22-49 (90)
167 1kd8_A GABH AIV, GCN4 acid bas 36.0 39 0.0013 24.1 3.6 31 137-167 3-33 (36)
168 1lwu_C Fibrinogen gamma chain; 35.7 72 0.0024 32.2 7.0 7 328-334 164-170 (323)
169 1m1j_A Fibrinogen alpha subuni 35.5 4.4E+02 0.015 28.1 14.1 109 59-187 41-149 (491)
170 1kd8_B GABH BLL, GCN4 acid bas 35.0 72 0.0025 22.7 4.8 28 179-206 3-30 (36)
171 3tul_A Cell invasion protein S 34.7 2.4E+02 0.0083 25.8 9.6 105 108-221 15-123 (158)
172 4dzn_A Coiled-coil peptide CC- 34.5 76 0.0026 21.7 4.7 20 190-209 8-27 (33)
173 2zdi_C Prefoldin subunit alpha 34.3 97 0.0033 27.1 6.9 45 238-282 96-140 (151)
174 3s9g_A Protein hexim1; cyclin 33.6 2.3E+02 0.0078 24.3 8.7 15 213-227 66-80 (104)
175 3lss_A Seryl-tRNA synthetase; 33.4 1.8E+02 0.006 30.8 9.8 29 256-284 113-141 (484)
176 4fla_A Regulation of nuclear P 33.3 2.5E+02 0.0084 25.3 9.5 46 85-130 79-124 (152)
177 1ci6_A Transcription factor AT 33.1 1.6E+02 0.0054 22.6 7.1 32 182-213 28-59 (63)
178 1uix_A RHO-associated kinase; 33.1 1.9E+02 0.0066 23.3 9.7 25 138-162 7-31 (71)
179 4etp_A Kinesin-like protein KA 32.9 88 0.003 32.0 7.3 45 180-224 6-50 (403)
180 4e61_A Protein BIM1; EB1-like 32.7 1E+02 0.0036 26.5 6.5 33 199-231 12-44 (106)
181 1kd8_A GABH AIV, GCN4 acid bas 32.2 60 0.0021 23.1 4.1 28 179-206 3-30 (36)
182 4gkw_A Spindle assembly abnorm 32.1 2.9E+02 0.0098 25.0 19.7 27 177-203 46-72 (167)
183 2yy0_A C-MYC-binding protein; 32.1 83 0.0028 23.7 5.2 27 198-224 19-45 (53)
184 4etp_A Kinesin-like protein KA 32.1 1.1E+02 0.0038 31.3 7.9 32 179-210 26-57 (403)
185 3he4_A Synzip6; heterodimeric 31.8 78 0.0027 23.8 4.9 35 234-268 17-52 (56)
186 1hjb_A Ccaat/enhancer binding 31.7 1.2E+02 0.0042 25.1 6.6 34 191-224 36-69 (87)
187 3ibp_A Chromosome partition pr 31.2 2.5E+02 0.0087 28.2 10.0 86 157-247 4-104 (302)
188 1nkp_B MAX protein, MYC proto- 31.0 48 0.0016 26.4 4.0 29 251-279 51-79 (83)
189 1t2k_D Cyclic-AMP-dependent tr 31.0 1.7E+02 0.0058 22.0 8.9 32 181-212 26-57 (61)
190 3vp9_A General transcriptional 30.6 67 0.0023 27.1 4.9 41 144-187 45-85 (92)
191 2p22_A Suppressor protein STP2 30.5 3.3E+02 0.011 25.2 10.8 50 226-275 31-84 (174)
192 3c3f_A Alpha/beta peptide with 30.1 59 0.002 22.9 3.7 27 137-163 3-29 (34)
193 2yy0_A C-MYC-binding protein; 29.8 95 0.0032 23.4 5.2 27 249-275 21-47 (53)
194 1g6u_A Domain swapped dimer; d 29.7 1.6E+02 0.0054 21.6 6.1 26 262-287 21-46 (48)
195 2dq0_A Seryl-tRNA synthetase; 29.7 1.9E+02 0.0064 30.1 9.2 38 250-287 72-109 (455)
196 2xdj_A Uncharacterized protein 28.6 2.4E+02 0.0082 23.0 9.5 8 219-226 55-62 (83)
197 2a01_A Apolipoprotein A-I; fou 28.5 1.6E+02 0.0055 27.8 7.9 107 111-217 130-239 (243)
198 3qne_A Seryl-tRNA synthetase, 28.5 2.3E+02 0.0078 30.0 9.7 34 244-277 75-108 (485)
199 2qyw_A Vesicle transport throu 28.4 2.6E+02 0.0087 23.2 8.9 51 136-192 50-100 (102)
200 2xv5_A Lamin-A/C; structural p 28.3 2.1E+02 0.0073 22.8 7.3 42 174-215 9-50 (74)
201 1gd2_E Transcription factor PA 27.9 1.1E+02 0.0036 24.4 5.4 22 202-223 47-68 (70)
202 1avy_A Fibritin, gpwac M; bact 27.9 68 0.0023 26.0 4.2 39 251-289 5-43 (74)
203 2eqb_B RAB guanine nucleotide 27.7 2.8E+02 0.0096 23.5 13.4 35 154-188 24-58 (97)
204 2wuj_A Septum site-determining 27.7 58 0.002 24.6 3.7 28 194-221 30-57 (57)
205 2l5g_B Putative uncharacterize 27.5 1.2E+02 0.0043 22.2 5.2 32 174-205 6-37 (42)
206 2xdj_A Uncharacterized protein 27.5 2.5E+02 0.0086 22.9 9.3 47 178-224 7-53 (83)
207 2dq0_A Seryl-tRNA synthetase; 26.6 3.2E+02 0.011 28.4 10.3 28 197-224 75-102 (455)
208 1gk6_A Vimentin; intermediate 26.5 2.1E+02 0.0072 21.6 6.9 41 175-215 5-45 (59)
209 2bni_A General control protein 26.4 69 0.0024 22.6 3.5 27 137-163 3-29 (34)
210 1wlq_A Geminin; coiled-coil; 2 26.2 2E+02 0.0067 23.9 6.8 23 251-273 42-64 (83)
211 2y3a_B Phosphatidylinositol 3- 26.1 4.7E+02 0.016 25.8 11.0 24 82-105 50-73 (302)
212 1gs9_A Apolipoprotein E, APOE4 25.8 3.7E+02 0.013 24.2 9.8 13 130-142 61-73 (165)
213 1gu4_A CAAT/enhancer binding p 25.6 1.8E+02 0.0061 23.6 6.5 35 190-224 35-69 (78)
214 4h22_A Leucine-rich repeat fli 25.6 3.2E+02 0.011 23.4 10.2 56 138-207 19-74 (103)
215 2oxj_A Hybrid alpha/beta pepti 25.2 81 0.0028 22.2 3.7 27 137-163 3-29 (34)
216 1hjb_A Ccaat/enhancer binding 25.1 1.4E+02 0.0049 24.6 5.9 29 262-290 44-72 (87)
217 1cxz_B Protein (PKN); protein- 24.9 1.8E+02 0.0062 24.1 6.5 50 232-281 34-83 (86)
218 2akf_A Coronin-1A; coiled coil 24.8 1E+02 0.0035 21.1 4.0 15 266-280 11-25 (32)
219 1gu4_A CAAT/enhancer binding p 24.5 1.4E+02 0.0047 24.2 5.6 33 258-290 40-72 (78)
220 1gk4_A Vimentin; intermediate 24.4 2.7E+02 0.0094 22.2 11.3 23 199-221 2-24 (84)
221 1ik9_A DNA repair protein XRCC 24.0 4.5E+02 0.016 24.7 11.2 37 217-256 158-195 (213)
222 3onj_A T-snare VTI1; helix, HA 23.9 3E+02 0.01 22.5 9.8 57 136-196 35-92 (97)
223 2wq1_A General control protein 23.8 1.1E+02 0.0038 21.4 4.1 21 181-201 4-24 (33)
224 3ra3_B P2F; coiled coil domain 23.7 64 0.0022 21.4 2.8 25 242-266 2-26 (28)
225 3m91_A Proteasome-associated A 23.5 2.3E+02 0.0077 21.3 6.2 32 156-187 9-40 (51)
226 3c3f_A Alpha/beta peptide with 23.5 1.1E+02 0.0039 21.4 4.1 14 181-194 5-18 (34)
227 3ra3_A P1C; coiled coil domain 23.4 49 0.0017 21.9 2.2 21 204-224 6-26 (28)
228 1dh3_A Transcription factor CR 23.4 1.1E+02 0.0039 22.9 4.6 29 256-284 24-52 (55)
229 3mov_A Lamin-B1; LMNB1, B-type 23.4 3.2E+02 0.011 22.7 8.2 6 158-163 14-19 (95)
230 2pms_C Pneumococcal surface pr 23.0 3.9E+02 0.013 23.6 8.6 24 271-294 64-87 (125)
231 3viq_B Mating-type switching p 22.5 2E+02 0.0068 23.9 6.2 20 198-217 48-67 (85)
232 2wt7_B Transcription factor MA 22.5 1.3E+02 0.0044 25.2 5.2 35 244-278 52-86 (90)
233 2dgc_A Protein (GCN4); basic d 22.4 1.1E+02 0.0038 23.6 4.5 28 248-275 31-58 (63)
234 1fzc_C Fibrin; blood coagulati 22.2 60 0.0021 32.7 3.7 42 242-283 6-47 (319)
235 3m48_A General control protein 22.1 87 0.003 21.9 3.3 26 138-163 3-28 (33)
236 4e61_A Protein BIM1; EB1-like 21.6 2.8E+02 0.0097 23.8 7.3 42 176-217 10-51 (106)
237 1nkp_A C-MYC, MYC proto-oncoge 21.2 1.3E+02 0.0046 24.4 5.0 30 251-280 56-85 (88)
238 1vcs_A Vesicle transport throu 21.1 3.5E+02 0.012 22.3 8.5 53 136-194 39-91 (102)
239 3s84_A Apolipoprotein A-IV; fo 21.0 5.7E+02 0.019 24.7 23.3 208 111-331 42-273 (273)
240 1avy_A Fibritin, gpwac M; bact 21.0 1.8E+02 0.0061 23.6 5.4 36 240-275 8-43 (74)
241 1ik9_A DNA repair protein XRCC 21.0 5.2E+02 0.018 24.2 11.7 20 144-163 141-160 (213)
242 3he5_A Synzip1; heterodimeric 20.9 2.5E+02 0.0087 20.6 6.3 19 151-169 5-23 (49)
243 3c3g_A Alpha/beta peptide with 20.9 1.5E+02 0.005 20.8 4.3 26 138-163 3-28 (33)
244 2nnu_B HUNK1 protein, bromodom 20.9 49 0.0017 21.9 1.8 16 79-94 6-21 (26)
245 1uo4_A General control protein 20.7 1E+02 0.0035 21.7 3.5 27 137-163 3-29 (34)
246 2l5g_B Putative uncharacterize 20.6 1.7E+02 0.0057 21.5 4.7 32 188-219 6-37 (42)
247 2pms_C Pneumococcal surface pr 20.6 4.4E+02 0.015 23.3 8.6 20 110-129 10-29 (125)
248 2z5i_A TM, general control pro 20.5 1.5E+02 0.0053 22.1 4.8 36 111-147 10-45 (52)
249 3gn4_A Myosin-VI; unconvention 20.3 83 0.0028 28.6 3.8 77 195-273 63-140 (148)
250 2j69_A Bacterial dynamin-like 20.1 8E+02 0.027 26.5 12.2 111 81-210 583-695 (695)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.95 E-value=1.6e-05 Score=72.09 Aligned_cols=127 Identities=12% Similarity=0.129 Sum_probs=52.0
Q ss_pred HHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011828 90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI 169 (476)
Q Consensus 90 ~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~ 169 (476)
+...+..|..+....-..-.-++..+..+..++..+...+..+ ...+..++.+...+......++..+..+........
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY-SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFE 96 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333333333334444444444444444443322 222244444444444444444444444444444444
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011828 170 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 170 Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
.....+...+..+...+.....++..+...+..+......+...+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (284)
T 1c1g_A 97 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQ 144 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 444444444444444444443344444333333333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.88 E-value=1.9e-05 Score=71.53 Aligned_cols=15 Identities=33% Similarity=0.248 Sum_probs=5.6
Q ss_pred hHHHHHHhHHHHHHH
Q 011828 304 TQIEAAGALIDKLIT 318 (476)
Q Consensus 304 ~qie~a~~~v~kl~~ 318 (476)
.++..+..-+..+..
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (284)
T 1c1g_A 237 TRAEFAERSVTKLEK 251 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.37 E-value=6.6e-07 Score=102.65 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 011828 112 EGTVQQLQNECDLYKEKVQAT------LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 185 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~l------lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~E 185 (476)
++.++.|+.++..++..++.. +.+++..|+.+...+..........+.+++........+...+++++..++.+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443322 22222333333333333333333333333333333333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+.....++..+..++..+..+...+..++..++..+..|
T Consensus 936 lee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l 974 (1184)
T 1i84_S 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974 (1184)
T ss_dssp HHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333333333333333333333444444433333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.27 E-value=2.2e-06 Score=98.34 Aligned_cols=111 Identities=21% Similarity=0.188 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 011828 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 190 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~ 190 (476)
++..+..|+.++..+...++... ..+..++.+...+......++..+.+++............++.++..++.++....
T Consensus 883 le~~l~~Le~e~~~l~~~L~~e~-~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~ 961 (1184)
T 1i84_S 883 LEQKHTQLCEEKNLLQEKLQAET-ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433222 22244444455555555555555555555555444444444444555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011828 191 QKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
.++..+..++..+..+...+..++..++.++.
T Consensus 962 ~eleele~~l~~l~~e~~~le~~l~~l~~el~ 993 (1184)
T 1i84_S 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993 (1184)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.36 E-value=0.037 Score=53.30 Aligned_cols=160 Identities=15% Similarity=0.186 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011828 115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194 (476)
Q Consensus 115 IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla 194 (476)
++.++.+|+.+.+.+..+ ...|..++.+...+-.....+...+.+++.. ...++..|..++..+.....++.
T Consensus 13 LQ~lD~~i~~l~~~~~~l-p~el~~le~~~~~l~~~~~~~~~~l~d~~~~-------~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREK-RKDLDKALNDKEAKNKAILNLEEEKLALKLQ-------VSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777666665443 2333444444444444444444444444443 33334444444444444444432
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 195 AL--EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ 272 (476)
Q Consensus 195 ~L--epeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~ 272 (476)
.. -.+|..|..+...++.+...++.++..+....+. ++..+..+...+..+..++..+. ..+...+..
T Consensus 85 ~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~-------~~~~l~~~~~~l~~~~~~l~~~~---~~~~~~~~e 154 (256)
T 3na7_A 85 EIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKR-------KSEKQEDLKKEMLELEKLALELE---SLVENEVKN 154 (256)
T ss_dssp HCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 22 2355555555555555555555555544332222 22233333333333333333322 233334444
Q ss_pred HHHHHHHHHHhhhhhhhhhh
Q 011828 273 LKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 273 LkeqIseLqs~lqeLeeei~ 292 (476)
+...+..+..++..+...+-
T Consensus 155 ~~~e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 155 IKETQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 44555555555555555553
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.27 E-value=0.042 Score=51.10 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHH
Q 011828 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK 186 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EI 186 (476)
+.+.|..|+.++.++..+|+.-.... -.+......+.+..+.+|....+|++......-.+..|+..+..|+...
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~-~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTA-VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777666654444 5555666666666677777777776665554444444444444444433
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.25 E-value=0.05 Score=52.43 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011828 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 178 qIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
++..++..+.....++..+..++.++......+..++...+.++.
T Consensus 40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444455555455555555544444
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.21 E-value=0.05 Score=51.40 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH
Q 011828 89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 168 (476)
Q Consensus 89 ~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~ 168 (476)
..++-|.+.+..-.-..|.=.-++.....++.. .+.||.-++..|.+++....++..+.+.+...+-.++++....
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqes----SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEG----SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444433344443333333 3334444444555555555555555555555555555543222
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011828 169 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 169 ~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
. ..+...+..|+.++.........+...+..|.-.|+.|..+..-+...+.
T Consensus 83 ~---~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 83 Y---AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 2 22233455555555554444455555555555555554444443333333
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.18 E-value=0.019 Score=54.23 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=11.8
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHH
Q 011828 105 IQKEATLEGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 105 ~~~e~~~Ek~IkqLqeEi~~lkqkL 129 (476)
-+-|+-||+.|.+++..+..+..++
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~ 65 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADN 65 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.62 E-value=0.24 Score=46.04 Aligned_cols=130 Identities=13% Similarity=0.163 Sum_probs=76.2
Q ss_pred HhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Q 011828 152 ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 231 (476)
Q Consensus 152 A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~W 231 (476)
..+|-.+.++..........-+.+-..-..+...+....+....|...+..|.+....|.+.+..|.+.+. .||..|
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~---qEr~~r 85 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE---AERRDR 85 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34444445555444444444444444444455555555666667777777777777777777777766554 444444
Q ss_pred hhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011828 232 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 232 LkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
.+.+ +.|..++.-+.+|..++..+.........++..|.+.|+.+.....+++
T Consensus 86 ~q~s----e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 86 GHDS----EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444 3444555555666666666666666677777777777776655555544
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.48 E-value=0.52 Score=59.86 Aligned_cols=91 Identities=11% Similarity=0.157 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 269 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeE 269 (476)
..+++.++.++.....+-.....+++.+++++..|+++.+..+.+=-.|+..+......+.....=|..|..++.-|.+.
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 35566677777777777777777888888888888887777554333666666655555555555566666666777777
Q ss_pred HHHHHHHHHHH
Q 011828 270 NRQLKENVSSL 280 (476)
Q Consensus 270 Iq~LkeqIseL 280 (476)
++.+..++..+
T Consensus 2093 ~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2093 SENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77776666655
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.47 E-value=0.11 Score=59.90 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011828 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE---QKISQLRDESAALNMKRASLEERLKLLEAD 227 (476)
Q Consensus 151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le---peiekL~~EeasLkQKLasLEeKL~~LKaE 227 (476)
...+|.+|.+|+..++....+...|.+++..++. .+.++.+.|+ .+++.+..+...++.++..+++++..|..+
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~---~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~ 999 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI---TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999 (1080)
T ss_dssp ----------------------------CHHHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555555555555555444432 2222333332 222223333333333334444444333222
Q ss_pred hhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011828 228 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 228 RD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
... +.+....+...+..++ ..|++.+++|..+++.|+.+++++...+...+.+
T Consensus 1000 ~~~-------~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~ 1052 (1080)
T 2dfs_A 1000 LHQ-------TQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052 (1080)
T ss_dssp HHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1111222222222222 2444556666666666666666666555555543
No 13
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.47 E-value=0.36 Score=44.23 Aligned_cols=120 Identities=22% Similarity=0.187 Sum_probs=87.7
Q ss_pred hhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHH
Q 011828 97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 176 (476)
Q Consensus 97 l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LE 176 (476)
+..+.+--..+=...+..|..|++++...-..| +-|+.--....++...++.+|+.|...+.-...+-...+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nl--------KsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AE 97 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNL--------KSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAE 97 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444446666778888888888888887776 446777788888999999999999998888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 177 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 177 eqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..+..|+..|+...-++..-+.+|..+..+-...-..|.++.++.-.|
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 778888888887777777777777777666655555555554444444
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.39 E-value=0.038 Score=63.55 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=43.4
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhH
Q 011828 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGAL 312 (476)
Q Consensus 234 kEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~ 312 (476)
+|. .++..+..+..++..++.++..+.+++..+++.++++++ +|+..+..|+.+. ..|+.|++.+...
T Consensus 977 ~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~--------~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQN--------TLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 344 556667777777777777777777777777777666653 3334444444433 3556666665554
Q ss_pred HHHHH
Q 011828 313 IDKLI 317 (476)
Q Consensus 313 v~kl~ 317 (476)
+.++-
T Consensus 1046 ~~~~~ 1050 (1080)
T 2dfs_A 1046 IHDQA 1050 (1080)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.38 E-value=0.77 Score=58.40 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=74.7
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHHHHHhHHHHH
Q 011828 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKL 316 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie~a~~~v~kl 316 (476)
.++..+..++..+...+.++..++..+..++..++.|+.+.+....+-+.|+.++.. ....++.|..||..|
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~--------~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK--------VKNKVDRSIALLDNL 2082 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhh
Confidence 566677777777777777777888888888888888888888777777777777653 356889999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhh
Q 011828 317 ITENIELVEKVNDLSVKLDRQSVA 340 (476)
Q Consensus 317 ~~en~~l~ekvneL~~~l~~~~~~ 340 (476)
-.|+.--.+.+.+|..++...--.
T Consensus 2083 ~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2083 NSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHhccHH
Confidence 999999998888887655544333
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.93 E-value=0.42 Score=41.89 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011828 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 229 (476)
Q Consensus 150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD 229 (476)
..+.++..|+.|+..+......+..|+.+...|..++......+. .-...++..++....|.+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~--------------~E~~~l~e~EE~~~~L~~--- 76 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQ--------------AEQDNLADAEERCDQLIK--- 76 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHH---
Confidence 445566666666666665555555555555555555544332222 112223333333333333
Q ss_pred hHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 230 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 282 (476)
Q Consensus 230 ~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs 282 (476)
..+.|...|..+...+.........|...+..+..++..|+.+|..+..
T Consensus 77 ----~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 77 ----NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444454444444444444555555555555555555555555543
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.31 E-value=0.12 Score=42.84 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=40.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011828 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
.|+..|..++..+..|..+...+......+..+|++|+.....|+.+|..|=
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777888888888888888888888888888888887663
No 18
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.85 E-value=0.33 Score=42.19 Aligned_cols=86 Identities=24% Similarity=0.331 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011828 88 AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (476)
Q Consensus 88 ~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es 167 (476)
.+++.+|..|+...|....--+-++-.|..++...+..+.+.+. -+...+.+|..|..|+-..+.
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~---------------E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE---------------EMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHhhhcccH
Confidence 36677777777776666666666666666666666655555332 122345556666666666666
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q 011828 168 HIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 168 ~~Qkea~LEeqIkqLe~EIs~ 188 (476)
..-.+..|+.++..|+.++..
T Consensus 81 ~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 81 ASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666664
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.64 E-value=0.29 Score=40.63 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG-------LEMNIANLQSEKEFWLQKEAALEQKI 200 (476)
Q Consensus 135 EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~-------LEeqIkqLe~EIs~~~qEla~Lepei 200 (476)
+.+.+|+.....++..++-++..|..|+.++....+.... |..++.+|+.+...|...+..|..++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456777778888888888888888888888777666665 66666667777777666666665554
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.46 E-value=2.9 Score=38.28 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=21.2
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
.|+..|..+...+..-......+..+++....++..+...+..|
T Consensus 102 kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 102 KLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 44445555555555445555555555554444444444444433
No 21
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.31 E-value=2.5 Score=36.95 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011828 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQK 150 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk 150 (476)
.++.++.++.++..++.+++..-..+ +.|+..+..+.+.
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r-~ele~~~~~l~~E 49 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARR-KELEEKMVSLLQE 49 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44555566666666665554333333 3333333333333
No 22
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.96 E-value=3.7 Score=37.62 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 192 KEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 192 Ela~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+++.+.+++..|......-..+-...|.....+
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~i 84 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKL 84 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444444444444333
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.78 E-value=2.6 Score=35.58 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011828 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
..|+.+.+.+.-....++..++.++.......+.-..|.-+|..|+.+.+
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666655433333333333333333333333
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.56 E-value=2 Score=36.04 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=22.7
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011828 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
+|++.+..+..+...+...+......+..........-..+.+|..+|+-|+
T Consensus 48 sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 48 GLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444444444444444444433333333344444444444443
No 25
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=93.40 E-value=2.3 Score=35.83 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHH
Q 011828 179 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 255 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~Q 255 (476)
+..|+.++.....+.+.+..++..|..+.+.+...+..++++...|..+-..+.+.-......+.....+..+|..+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777778888888888888888888888888888888884444444333333333333333333333333
No 26
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.89 E-value=2.8 Score=36.48 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Q 011828 113 GTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 180 (476)
Q Consensus 113 k~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIk 180 (476)
..|..|++++..+... ...++..|+.|+-.++++=+..-..-..+.+|+........+.+-|+.+|.
T Consensus 35 ~~~~~Lq~El~~lr~~-~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAI-KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555 444555556666666666665555666666666666666655555555544
No 27
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.28 E-value=4.6 Score=34.04 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011828 197 EQKISQLRDESAALNMKRAS 216 (476)
Q Consensus 197 epeiekL~~EeasLkQKLas 216 (476)
.........+++.|..++.-
T Consensus 78 ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 78 EENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.86 E-value=3.3 Score=36.09 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 011828 116 QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA 195 (476)
Q Consensus 116 kqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~ 195 (476)
+.-+.+|..+.+.+ ..|+.+.+.+....+.+|..|.+++...... -..+...|..|+.++.....+++.
T Consensus 32 ~~~k~Ei~elrr~i--------q~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 32 RNTKHEISEMNRMI--------QRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp --CHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444555555553 4566666677777788888888887755433 344666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011828 196 LEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 196 LepeiekL~~EeasLkQKLa 215 (476)
...+|..|.+..-.|...++
T Consensus 101 ql~EYq~LlnvKl~Ld~EIa 120 (129)
T 3tnu_B 101 LLREYQELMNTKLALDVEIA 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77778888777766655544
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.84 E-value=2.6 Score=36.82 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011828 115 VQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194 (476)
Q Consensus 115 IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla 194 (476)
++..+.+|..+.+.+ ..|+.+...+....+.+|..|.+++....... ..++..|..|+.++.....+++
T Consensus 33 l~~~k~Ei~elrr~i--------q~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l---~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 33 VQSGKSEISELRRTM--------QNLEIELQSQLSMKASLENSLEETKGRYCMQL---AQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp --------CHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666654 45666667776777888888888887644433 3466667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011828 195 ALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 195 ~LepeiekL~~EeasLkQKLa 215 (476)
....+|..|.+..-.|...++
T Consensus 102 ~ql~EYq~Ll~vKl~Ld~EIa 122 (131)
T 3tnu_A 102 QQNQEYKILLDVKTRLEQEIA 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777778777777766655544
No 30
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.72 E-value=1.4 Score=36.35 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALN 211 (476)
Q Consensus 153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLk 211 (476)
.+...+.+|+.+.+.-...+...+..+..|+..++...--...|+.+++.|.++-..|+
T Consensus 25 n~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 25 NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666666666666555666666666666655543
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.22 E-value=5.9 Score=33.17 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011828 138 QQLQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
..|+.+.+.++-..-.++..++.+...
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~ 38 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDR 38 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.17 E-value=5.5 Score=34.48 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=49.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011828 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
..+++..|..|+.+|+.+... .+.+.-.|.+++...++ |+.+.+.-...+..++..|..|+..++
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e-~a~l~leldn~~~~~ed--------------fk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTND-KARVEVERDNLAEDIMR--------------LREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--------------HHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 346677777777777666665 44444333444444433 333333333444556666777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 188 FWLQKEAALEQKISQLRDESAALN 211 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLk 211 (476)
...--...|+.+++.|.++-..++
T Consensus 80 ~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 80 NASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666665555544
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.06 E-value=9.1 Score=35.03 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=8.3
Q ss_pred hHhhHHHHHHHHHHHHHHH
Q 011828 107 KEATLEGTVQQLQNECDLY 125 (476)
Q Consensus 107 ~e~~~Ek~IkqLqeEi~~l 125 (476)
+.+.|++++..++.++...
T Consensus 14 ~qs~LeD~L~~~R~el~~~ 32 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQ 32 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.02 E-value=3.9 Score=43.99 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=21.9
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
.|+++|..|+..+..-...|..|+..+..+..+||.|...|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554445555555555555555555544443
No 35
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.54 E-value=3.2 Score=34.26 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011828 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 221 (476)
Q Consensus 156 ~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL 221 (476)
..++.|+..+......+..++.+...|..++......++........|......|..++..+++++
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333344444444444443333355556666666666666665555555443
No 36
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.82 E-value=8.1 Score=32.44 Aligned_cols=47 Identities=13% Similarity=0.252 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 116 QQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 116 kqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
..|+.++..++.. +..+...+..|+.++..+-..+..++.....|..
T Consensus 7 ~~l~~eL~~l~~e-E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 7 EQLQRELKELALE-EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555 3333333355555555444444444444444443
No 37
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=89.64 E-value=5 Score=33.07 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHH
Q 011828 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 185 (476)
Q Consensus 110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~E 185 (476)
-.++.++.++.++..++..++-.-..+ +.|+..+..+++....+...+.+..+........+..|+..|..++..
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~r-kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIK-KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777776666665444444 666666666666666666665555555555555555555555555443
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.33 E-value=3.2 Score=34.22 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011828 116 QQLQNECDLYKEKVQATLEETIQQLQRQ-------NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 116 kqLqeEi~~lkqkLE~llqEkIkQLq~E-------~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
+.|+.+|..++.. .+.+.-.|.+++.. ++.=+...+.+|..|.-|+-..+..--.+..|+.++..|+.+|..
T Consensus 3 ~eLr~qi~~l~~e-~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 3 RELRRQVDQLTND-KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 33333333444433 344445688999999999999999999999999999999999985
Q ss_pred H
Q 011828 189 W 189 (476)
Q Consensus 189 ~ 189 (476)
.
T Consensus 82 L 82 (86)
T 3swk_A 82 L 82 (86)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.52 E-value=6.2 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQ 212 (476)
.+..|..|+..++....+.+.+..++..|......++.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555544444443
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.22 E-value=1.7 Score=38.84 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011828 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
.+|.+++..++..+.++..++..|+..+..|+.++..|+
T Consensus 92 ~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 92 YDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444444443
No 41
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=87.63 E-value=4 Score=42.44 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHH
Q 011828 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 254 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~ 254 (476)
+++.|..++.-+..-+++|..+..+++.+..+...|.+.+... |-..+-.....+....+....+.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~-------------~~~~Q~~~~d~~e~~tq~skkml~ 91 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI-------------YPSEKQTLPQSIEQLTQKSKKIIE 91 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------SCSSTTCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cccccCCCCCchhhHHHHHHHHHH
Confidence 4555666777677666677666666666666665554444332 333333222222222445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011828 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 255 QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
++..++..+.....+|..|+..+..++..|+.|+..+.
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777777777777777777766666666655443
No 42
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.13 E-value=7.1 Score=34.04 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=26.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011828 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
.|.-|+++..--..+-..=...+..+..++..|..++..|+.+++.|
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444555566666777777776666665544
No 43
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.96 E-value=3.8 Score=37.52 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 011828 313 IDKLITENIELVE 325 (476)
Q Consensus 313 v~kl~~en~~l~e 325 (476)
+.+|..||..|++
T Consensus 119 l~kLq~EN~~LV~ 131 (152)
T 3a7p_A 119 LSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3355566666655
No 44
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.34 E-value=5.3 Score=33.37 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011828 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (476)
Q Consensus 153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qE 192 (476)
-.+..|.+|+..++.....++.++-+|..|+.++..+..+
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777777777777777777777766655443
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.27 E-value=5.6 Score=35.48 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 011828 80 HLLQREAMAILEETVKHLRNE 100 (476)
Q Consensus 80 ~~~q~e~~~~~eeti~~l~~e 100 (476)
.+|++=| +.+.+.|+.++.-
T Consensus 28 e~L~~vA-~~vd~km~ei~~~ 47 (138)
T 3hnw_A 28 EYLQRVA-SYINNKITEFNKE 47 (138)
T ss_dssp HHHHHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHH-HHHHHHHHHHHhc
Confidence 3555555 5778888777754
No 46
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=85.98 E-value=4.1 Score=33.58 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 205 (476)
Q Consensus 153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~ 205 (476)
.+|.+|..|+..++...+++..+..+++++-...+-++.++..+.-.+.+|-.
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 47788888888888888888888888999988888888888888877777653
No 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.49 E-value=3.7 Score=35.72 Aligned_cols=95 Identities=16% Similarity=0.266 Sum_probs=31.7
Q ss_pred Hhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---cccchhhhHH
Q 011828 231 WTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT---SEQKDFSTQI 306 (476)
Q Consensus 231 WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~---~~~e~~~~qi 306 (476)
|.+.-+ .++..+..-...+...+.++..+...+..|.-+++.++.+...|...+.+.+........ .....|..++
T Consensus 12 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEAL 91 (129)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 433333 333333333333333444444444444444444444444444444444443333321100 0112334444
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 011828 307 EAAGALIDKLITENIELVE 325 (476)
Q Consensus 307 e~a~~~v~kl~~en~~l~e 325 (476)
..+..-+..++.|-++|+.
T Consensus 92 ~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 92 QKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666664
No 48
>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}
Probab=85.24 E-value=0.29 Score=31.95 Aligned_cols=13 Identities=62% Similarity=1.001 Sum_probs=11.8
Q ss_pred chhHHHHHHhhcc
Q 011828 453 PFRLVSFVAKYVS 465 (476)
Q Consensus 453 pfrlisfva~yvs 465 (476)
-|||+-||-|||-
T Consensus 4 gfrlvlfvkryvr 16 (26)
T 1z2t_A 4 GFRLVLFVKRYVR 16 (26)
T ss_dssp CTTHHHHHHHHTH
T ss_pred cEEEeeeHHHHHH
Confidence 4999999999994
No 49
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=85.06 E-value=6.9 Score=30.85 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 193 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR 271 (476)
Q Consensus 193 la~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq 271 (476)
++.|..+|+.+-..+ +.|=+.|.+.-+ .++..+......+...+.++..+...+..|.-+++
T Consensus 11 l~eiRaQYE~ia~kn-----------------r~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 11 MRDVRQQYESVAAKN-----------------LQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555 222245665555 55555555555555555555555555555555555
Q ss_pred HH
Q 011828 272 QL 273 (476)
Q Consensus 272 ~L 273 (476)
.+
T Consensus 74 sl 75 (77)
T 3trt_A 74 AL 75 (77)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 50
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.00 E-value=21 Score=36.22 Aligned_cols=49 Identities=6% Similarity=0.048 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
....++-++.++..+...+.+. ..+. +..+....|.++|+.++..+.++
T Consensus 368 ~~t~eeal~~~~~~i~~~l~~~---~~~~-e~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 368 RQTVDEALKDAQTRITAARDGL---RAVM-EARNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhh---HHHH-HhhhHHHHHHHHHHHHhhhHHHH
Confidence 3344555555555555433332 2222 34456666666666666665555
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.79 E-value=12 Score=38.04 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011828 180 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 221 (476)
Q Consensus 180 kqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL 221 (476)
++++.+.....+....+..+++++.++++.++..+..+...+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 334444444444444444455555554444444444443333
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.48 E-value=8.3 Score=35.30 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhh
Q 011828 180 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM 234 (476)
Q Consensus 180 kqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkk 234 (476)
..|+..|..+..++..-..-++.++++..+|.-.+..++.+++.|+.|.+.++..
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334445555566666666666666666666666554433
No 53
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.48 E-value=3.2 Score=36.27 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=13.0
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHH
Q 011828 302 FSTQIEAAGALIDKLITENIELVE 325 (476)
Q Consensus 302 ~~~qie~a~~~v~kl~~en~~l~e 325 (476)
+..++..+..-+..++.|-++|+.
T Consensus 89 lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 89 VEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555566666666664
No 54
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=83.84 E-value=21 Score=31.03 Aligned_cols=11 Identities=9% Similarity=0.302 Sum_probs=6.0
Q ss_pred hhhhHhhhhhc
Q 011828 227 DKDSWTQMESV 237 (476)
Q Consensus 227 ERD~WLkkEIs 237 (476)
||..||-.|+.
T Consensus 91 ErnalLE~El~ 101 (111)
T 2v66_B 91 ERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556555553
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.57 E-value=8.9 Score=41.31 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=60.3
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011828 59 DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQ 138 (476)
Q Consensus 59 ~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIk 138 (476)
|..--||+|-+. +..++..|- =|-.+|..|+++.+-+.| ....+..+...+-..+..++.
T Consensus 40 DwGvkCPSGCrL-------QglLdkqEr--DltkrINELKnqLEdlsK-----------nsKdseqy~k~~~E~Lr~rq~ 99 (562)
T 3ghg_A 40 DWNYKCPSGCRM-------KGLIDEVNQ--DFTNRINKLKNSLFEYQK-----------NNKDSHSLTTNIMEILRGDFS 99 (562)
T ss_dssp SBTTEEECHHHH-------HHHHHHHHH--HHHHHHHHHHHHHTHHHH-----------HHHHHHHHHHHHHHTTSSHHH
T ss_pred ccCCCCCcccch-------hhhHHhhcC--cHHHHHHHHHHHHHHHHh-----------hchhHHHHHHHHHHHHHHHHH
Confidence 566678888531 233444444 455666666666655432 233333333444444444445
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011828 139 QLQRQNDLRMQKEA-TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 139 QLq~E~~d~lQk~A-~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
+.. +++....+++ .|+-+|..|+.++....++...|+..|..+..+|.
T Consensus 100 q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 100 SAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 6666666666 77777777777776666555555555555544444
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=82.33 E-value=15 Score=29.97 Aligned_cols=20 Identities=0% Similarity=0.204 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011828 261 ESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 261 ee~s~LeeEIq~LkeqIseL 280 (476)
..+..+...+..+...+.++
T Consensus 79 ~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 57
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=82.28 E-value=20 Score=29.69 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 193 EAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 193 la~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
+..+..++..|......+..++..+...+..|
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555666666666666555
No 58
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=82.24 E-value=20 Score=29.65 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 253 RMQVVELEESRNNLLQENRQLKENVSSLRS 282 (476)
Q Consensus 253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs 282 (476)
...++.++..+..+...+..+...+.+++.
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444443333
No 59
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.08 E-value=18 Score=29.04 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 136 TIQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
+|.+|+.+.+.+.-....++..++..+.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544443
No 60
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.80 E-value=27 Score=30.81 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
++.+.+-.-+-+.+-.|-..++..+... +.+++.|+.+|..+.++|-....+++.|+.++..+...+.
T Consensus 42 ~~~eaQAaTCNqTV~tL~~SL~~ekaq~----------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 42 QDVEAQAATANHTVMALMASLDAEKAQG----------QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 4445555555555555555555544432 4467888888888888888788888888777766655544
No 61
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=81.41 E-value=20 Score=29.14 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 145 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 145 ~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
+.+....+.+|..|.+++...... ...++..|..|+.++.....+++....+|..|.+..-.|...++
T Consensus 4 ~~l~~~~~sLE~~l~e~e~~~~~~---~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 4 DALKGTNESLERQMREMEENFAVE---AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334445667777777777654432 34456667777777777777777777777777777766655544
No 62
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=81.32 E-value=44 Score=35.34 Aligned_cols=18 Identities=6% Similarity=0.359 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011828 111 LEGTVQQLQNECDLYKEK 128 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqk 128 (476)
.++.|++|+..++.+.++
T Consensus 98 V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhh
Confidence 556666666666666544
No 63
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=79.97 E-value=18 Score=29.24 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 153 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 204 (476)
Q Consensus 153 ~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~ 204 (476)
.+|.+|..|+..++...+++..+..+++++-...+-++.++..+.-.+.+|.
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~ 69 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3777788888888888888888888888888888888888887777777664
No 64
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=79.32 E-value=36 Score=30.77 Aligned_cols=47 Identities=30% Similarity=0.364 Sum_probs=32.8
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011828 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 283 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~ 283 (476)
+|...|..+..++..-.-+....=.+...|.-++..+++.+...+.+
T Consensus 116 ~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 116 SLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 66667777766666555555555567778888888888888776544
No 65
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.72 E-value=45 Score=33.70 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011828 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLE 225 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LK 225 (476)
..+.+.-..+++.|..+...+.++|..+++++.+|+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444445788888888888888888888877664
No 66
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.67 E-value=59 Score=34.41 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=32.8
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 011828 59 DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNEC 122 (476)
Q Consensus 59 ~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi 122 (476)
++--+||+| |-+ .+.|++-+. ..+.+|..|++..+..-++..-....|..|+..+
T Consensus 76 ~~G~~CPTt--C~l-----~D~L~k~q~--~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~sl 130 (464)
T 1m1j_B 76 ELGVLCPTG--CEL-----QTTLLKQEK--TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKL 130 (464)
T ss_dssp TTCEEEECT--THH-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCCCc--cHH-----HHHHHHhhh--hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 467789988 444 456666666 6777777777776655444443333444333333
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.95 E-value=12 Score=31.94 Aligned_cols=75 Identities=19% Similarity=0.089 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhh-----cccchhhhHHHHHHhHHHHHHHHHHHHHHhh
Q 011828 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSD--ESKKLQHAT-----SEQKDFSTQIEAAGALIDKLITENIELVEKV 327 (476)
Q Consensus 255 QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL--eeei~~~~~-----~~~e~~~~qie~a~~~v~kl~~en~~l~ekv 327 (476)
++..|..+++.|..++..|++.+..|..++... .-.+....| +.|=.. .-..++...+++|..|+..|.++|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~-~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTS-VARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666666555555331 112211111 011100 112245678999999999999988
Q ss_pred hhh
Q 011828 328 NDL 330 (476)
Q Consensus 328 neL 330 (476)
-.|
T Consensus 92 ~~l 94 (100)
T 1go4_E 92 RAM 94 (100)
T ss_dssp TTC
T ss_pred HHH
Confidence 776
No 68
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.84 E-value=27 Score=28.82 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=21.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIse 279 (476)
.+-+..+...+..+...++.|+..+..+..+..+++..+..
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555555543
No 69
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=72.63 E-value=23 Score=28.95 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=38.0
Q ss_pred HHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 149 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 149 Qk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
...+.+|.+|.+++..... ....++..|..|+.++.....+++....+|..|.+..-.|...++
T Consensus 10 ~q~~~Le~~l~e~E~~~~~---~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 10 CQLAAKEAKLRDLEDSLAR---ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp --CTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455677777777774322 334455566666666666666666666677777776665555444
No 70
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.40 E-value=14 Score=30.60 Aligned_cols=65 Identities=17% Similarity=0.330 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011828 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD 227 (476)
Q Consensus 156 ~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaE 227 (476)
+.+.+|++.+++..+.+..+.++|..++...-....++-..+.+...|. ..+..++.++..|+++
T Consensus 10 ~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~-------~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 10 VTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE-------AHVRQLQERMELLQAE 74 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcc
Confidence 4566899999999999999999999998888876666655554444444 3444444444444443
No 71
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.86 E-value=3.6 Score=37.01 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011828 140 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 140 Lq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
+..+++.+......+...++.|..........+...+.....++.++..
T Consensus 30 l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~ 78 (135)
T 2e7s_A 30 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 78 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555556666666666666555555555555555555555553
No 72
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.86 E-value=67 Score=33.34 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.0
Q ss_pred hhhhhhh
Q 011828 328 NDLSVKL 334 (476)
Q Consensus 328 neL~~~l 334 (476)
.+|.|.|
T Consensus 244 ~eL~I~L 250 (409)
T 1m1j_C 244 YALRIEL 250 (409)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 3444443
No 73
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.38 E-value=9.8 Score=30.86 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=25.3
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
|+..+.....++.....-|..|+.++...+.+|+.|+..++.++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555555566666666666666666666665554
No 74
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=69.73 E-value=53 Score=34.25 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHH
Q 011828 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM 254 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~ 254 (476)
+.+.|-.++..+..-+++|..+..+++.. =.+...-+..| ++.|...+-.....+....+.-.....
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~----------Ts~~~~~v~~i---k~~~~~~q~~~~~n~~~~~q~Skkml~ 91 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENK----------TSEVKQLIKAI---QLTYNPDESSKPNMIDAATLKSRKMLE 91 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH---HHHHCTTTCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhh----------hhHHHHHHHHH---HHhhccccCCCCcchhhHHHHHHHHHH
Confidence 34445555555554444444333333333 33333333333 345544554333333333333334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011828 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 255 QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
++..++.-+......|..|+..+....+.|+.|+
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~ 125 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLK 125 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555655555566666666555544444443333
No 75
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=69.20 E-value=57 Score=28.37 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 011828 199 KISQLRDESAALNMKRASL 217 (476)
Q Consensus 199 eiekL~~EeasLkQKLasL 217 (476)
.-+++..+...|..+++.|
T Consensus 84 dREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444443
No 76
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=68.84 E-value=38 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011828 197 EQKISQLRDESAALNMKRASLEERLKLLEADKD 229 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~~LKaERD 229 (476)
..++..+..+|..|+.++..++..+..-+.+++
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444333
No 77
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.52 E-value=41 Score=29.39 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011828 115 VQQLQNECDLYKEKVQA 131 (476)
Q Consensus 115 IkqLqeEi~~lkqkLE~ 131 (476)
|..|..++..++..++.
T Consensus 17 Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 17 IERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 78
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.22 E-value=63 Score=28.50 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 011828 186 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 229 (476)
Q Consensus 186 Is~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD 229 (476)
.+++..+.+....++..|..+...|+++|...++++.+|.++..
T Consensus 59 ~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 59 MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 33444444444567888888888888888888888888865443
No 79
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.17 E-value=82 Score=32.69 Aligned_cols=93 Identities=11% Similarity=0.156 Sum_probs=41.4
Q ss_pred cccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011828 58 VDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETI 137 (476)
Q Consensus 58 ~~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkI 137 (476)
-|...-||+|-.. +..++..+- =+.-+|..|++..+.+.|. -.++..+...+...+..++
T Consensus 42 eDwG~kCPsGCrL-------qg~Ldk~er--~~~~rIe~L~~~L~~~s~s-----------~~~~~~y~~~~~~~lk~~~ 101 (390)
T 1deq_A 42 EDWNTKCPSGCRM-------KGLIDEVDQ--DFTSRINKLRDSLFNYQKN-----------SKDSNTLTKNIVELMRGDF 101 (390)
T ss_pred hhccCCCCccchH-------HHHHHHhhh--hHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHH
Confidence 3677789999641 111222221 3344455555554443332 2333333334444444443
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011828 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 170 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Q 170 (476)
+|..+--.-+-+--..||.+|.-|+..+....+
T Consensus 102 ~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333333333333344455555555555544444
No 80
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=66.45 E-value=71 Score=30.77 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011828 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 184 ~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
..+..+.-.+-..+.++.-|......+..++...+..+..|+.+.-+
T Consensus 105 ~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS 151 (242)
T 3c9i_A 105 KAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVS 151 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCB
T ss_pred hhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhh
Confidence 33333333444444555555555556666666667777777665544
No 81
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=65.81 E-value=45 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011828 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 219 (476)
Q Consensus 178 qIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEe 219 (476)
+|.+|+..+.-+.+-...|-.++-.+.=++.-|.++|..+++
T Consensus 33 eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 33 EIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 466666666666666666667777777777777776666543
No 82
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=64.73 E-value=20 Score=27.06 Aligned_cols=41 Identities=24% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIse 279 (476)
+.+|+.++..+.+|-+.|+.|+...+..++||..|+.=+..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999998776553
No 83
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=64.31 E-value=50 Score=28.02 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=7.0
Q ss_pred HHHHHhHHHHHHHHHh
Q 011828 148 MQKEATLEETIKQLRN 163 (476)
Q Consensus 148 lQk~A~LE~tIKdLks 163 (476)
-+..+.++..|.+|+.
T Consensus 15 EeaL~~kq~~id~lke 30 (94)
T 3jsv_C 15 EEALVAKQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3334444444444444
No 84
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.95 E-value=12 Score=29.88 Aligned_cols=44 Identities=30% Similarity=0.320 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011828 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
....-+..|..+|..|+.....+..++..|+.++..|...+..+
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445556666677777777777777777777777776665543
No 85
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=63.91 E-value=66 Score=27.38 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011828 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
....+.-|...+..++..+..+...+..++.++..+...++++
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555544443
No 86
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=63.33 E-value=1.3e+02 Score=31.14 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=8.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH
Q 011828 242 IAGLSVDITQLRMQVVELEESR 263 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~ 263 (476)
|..|+..+..+..+++.|+..+
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444333
No 87
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=62.77 E-value=1.6e+02 Score=31.35 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011828 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 292 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~ 292 (476)
..|+.++.-|+..++.-...|..|+..|..+...++.|+.-+.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777776667777777777777777777776663
No 88
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=62.71 E-value=78 Score=27.54 Aligned_cols=58 Identities=21% Similarity=0.124 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHhhhhH
Q 011828 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS----LEERLKLLEADKDSW 231 (476)
Q Consensus 174 ~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas----LEeKL~~LKaERD~W 231 (476)
....++..|..-+....+-|..|...+.+.++.......+|.. +-.++..|+.|.|.+
T Consensus 42 ~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 42 DSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 3344444444445544555555555555555555444444442 223334556655554
No 89
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=62.12 E-value=31 Score=28.54 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011828 188 FWLQKEAALEQKISQLRDESAALNMKRASLE 218 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLkQKLasLE 218 (476)
.+.|++..|.-+++.+.++..+++.+|-++-
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4666677777777777777777777666664
No 90
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=61.57 E-value=19 Score=26.44 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 240 e~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
..++.|......|......|++.++.|..|++.|+..+.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 456677777778888888888999999999999887653
No 91
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=60.83 E-value=56 Score=27.71 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011828 258 ELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 258 ~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
.=.+.+..+.++.+.|..++..++.++..|..
T Consensus 58 aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 58 AERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555444443
No 92
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=60.75 E-value=94 Score=27.84 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011828 110 TLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 110 ~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e 166 (476)
..++.|..|..++...+.-. ...+..++...++.+-++..+..-....+
T Consensus 49 ~deEr~~~lE~qLkeak~~a--------eeadrKyeE~~RKl~~~E~dLeraeeRae 97 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIA--------EDADRKYEEVARKLVIIESDLERAEERAE 97 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554442 33455566666666666666555444433
No 93
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=60.68 E-value=77 Score=26.86 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHH
Q 011828 145 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI 179 (476)
Q Consensus 145 ~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqI 179 (476)
+.+++..-.++..++.|+.++....+.-..++.+|
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665554444433333333
No 94
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=60.54 E-value=1.9e+02 Score=31.23 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHHHHHHHH----HHhhhhHhh
Q 011828 206 ESAALNMKRASLEERLKLL----EADKDSWTQ 233 (476)
Q Consensus 206 EeasLkQKLasLEeKL~~L----KaERD~WLk 233 (476)
.+...+++..+.++.+++| ..||..|++
T Consensus 513 ~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~ 544 (592)
T 1f5n_A 513 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 544 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777775 455555543
No 95
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.87 E-value=30 Score=28.63 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=33.7
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
.+.+.++..+..+..+..++...+.....|..+++.|++++.+|+
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777778888888888887888888888877777753
No 96
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.81 E-value=44 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 011828 196 LEQKISQLRDESAALNMKRASLEERLKLLEADK 228 (476)
Q Consensus 196 LepeiekL~~EeasLkQKLasLEeKL~~LKaER 228 (476)
+..++..+..+|..|+.++..++..+..-+.++
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q 43 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAER 43 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444443333
No 97
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=59.50 E-value=1.9e+02 Score=31.10 Aligned_cols=37 Identities=14% Similarity=-0.039 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011828 151 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 151 ~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
.+..|-.|+.=+.+.+...+....|+++.+.++.-+.
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~ 518 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMME 518 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555444
No 98
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=59.03 E-value=84 Score=26.77 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 177 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 177 eqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..|..|+.++.....++..+...++.....+..|..+++.++.....|
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777888888888888888888888888877777776655444433
No 99
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=59.01 E-value=42 Score=28.10 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=37.1
Q ss_pred HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 150 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 150 k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
..+.+|..|.+++..... ....++..|..|+.++.....+++....+|..|.+..-.|...++
T Consensus 20 ~~~~LE~~l~e~E~~~~~---e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 20 ESRACLERIQELEDLLAK---EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666664332 333455566666666666666666666667777666655554444
No 100
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=58.44 E-value=42 Score=31.73 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=31.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011828 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
++++..-..-+..|+.+...|...+.....+|+.|++++.+++.+....+...
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 34444555556677777777777777788888888888777776665444333
No 101
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.81 E-value=36 Score=25.33 Aligned_cols=42 Identities=19% Similarity=0.399 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011828 253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 294 (476)
Q Consensus 253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~ 294 (476)
+.+|..|+..--.|+...|.|..-|..++..+.-|+.++.++
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444333344444444444555555555555555543
No 102
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=57.75 E-value=1.2e+02 Score=28.08 Aligned_cols=118 Identities=20% Similarity=0.246 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHhhhhHHHH--------------
Q 011828 112 EGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-------KEATLEETIKQLRNQNDLHIQ-------------- 170 (476)
Q Consensus 112 Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ-------k~A~LE~tIKdLks~~es~~Q-------------- 170 (476)
+..|..+-..+..+-.....+..+- .++-++++..++ ....+.++|+=|+.+......
T Consensus 9 ~~~ve~v~~~L~e~h~qy~~ks~~y-d~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~ 87 (170)
T 3l4q_C 9 EDSVEAVGAQLKVYHQQYQDKSREY-DQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGN 87 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcC
Confidence 3344444444444444443333333 455555555554 344456677777776543332
Q ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011828 171 --REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 230 (476)
Q Consensus 171 --kea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~ 230 (476)
....+......|++.+.........|...+......+-.+..++.++.-.+.+|..-||.
T Consensus 88 ~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 88 EKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp SSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 223355666677777777777777778888888888888888888888888888666665
No 103
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.12 E-value=77 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.334 Sum_probs=18.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (476)
Q Consensus 240 e~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqI 277 (476)
+-+..+......+...++.|+..+..+..+...++..+
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555444
No 104
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=56.94 E-value=76 Score=26.26 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011828 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 226 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~LKa 226 (476)
|-.+|+.|+-.+.....+-...+-++...+++-+.|.+.|..-++.++.|+.
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4444555555555555555555555556666666666677766666666654
No 105
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.94 E-value=27 Score=30.26 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=21.9
Q ss_pred HHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHH
Q 011828 225 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE 260 (476)
Q Consensus 225 KaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Le 260 (476)
+.||++||..-+..+..+..|+..+..|+..+....
T Consensus 3 ~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 357888888777666666555555555555544433
No 106
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=56.58 E-value=81 Score=25.83 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=21.0
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 237 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 237 sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
+|+..-..|+.=-..|..=|..|+.+...+...|..|+....+|
T Consensus 29 sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 29 ALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445555555555555555555555544
No 107
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.12 E-value=42 Score=28.82 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=34.9
Q ss_pred hhHhhhhhchHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 229 DSWTQMESVSKETIAGLSVDITQLRM-------QVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 229 D~WLkkEIsLke~IssL~~~i~sLq~-------QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
..+++.-+.|++.++.+..+...|+. +|..|+.++.-|..+|+.|+..-..|.
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555556666666666666655555 677777777777777777766655553
No 108
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=56.04 E-value=41 Score=27.60 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011828 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK 291 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei 291 (476)
.++....+|-..|..|..+...+..++.+++.....+..++.+++++.
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777788888888888888888888888888888777665
No 109
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=55.30 E-value=2.1e+02 Score=30.27 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011828 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 216 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLas 216 (476)
+.+.|-.++..++.-+++|..+..+++....+.-.+-..+..
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~ 123 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKD 123 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 556666777777766666666666665555555444444433
No 110
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=55.17 E-value=1e+02 Score=26.65 Aligned_cols=35 Identities=6% Similarity=0.093 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hhhH
Q 011828 197 EQKISQLRDESAALNMKRASLEERLKLLEAD-KDSW 231 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~~LKaE-RD~W 231 (476)
..-+..|..+..++.+.+..-++++..++++ .|.|
T Consensus 14 tg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey 49 (116)
T 3mxz_A 14 TSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPY 49 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 3446778888888988888888999888774 4554
No 111
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=55.04 E-value=1.1e+02 Score=26.68 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 195 ALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 195 ~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.+..+|.+|..+...+...|..+.+....|
T Consensus 3 ~t~~~~~~lq~~~~ql~~qL~k~~~~r~~L 32 (112)
T 1x79_B 3 ETRDQVKKLQLMLRQANDQLEKTMKDKQEL 32 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555554444433
No 112
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=54.90 E-value=1.5e+02 Score=28.50 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011828 118 LQNECDLYKEKVQAT-LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL 196 (476)
Q Consensus 118 LqeEi~~lkqkLE~l-lqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~L 196 (476)
++.+...=.|.+.+. -+.+|.+++.+..+|-..++.-+..|..|+..+-...-.-..|..++..|+..+..+...++.|
T Consensus 66 YdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal 145 (242)
T 3c9i_A 66 YDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 145 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhh
Confidence 444444444443322 2456777777888887777777777777777766666666666666666666666666665555
Q ss_pred HHHH
Q 011828 197 EQKI 200 (476)
Q Consensus 197 epei 200 (476)
...|
T Consensus 146 ~~Dy 149 (242)
T 3c9i_A 146 QADY 149 (242)
T ss_dssp HHHB
T ss_pred hhhh
Confidence 5554
No 113
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=54.18 E-value=45 Score=32.36 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhc-----ccch-hhhHHHHHHhHHHHH
Q 011828 243 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS-----EQKD-FSTQIEAAGALIDKL 316 (476)
Q Consensus 243 ssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~-----~~e~-~~~qie~a~~~v~kl 316 (476)
.+++.-...+.+.+..|+.++.++.+..+.....+..+...+.+|...+..++-. |.++ .+ .-|..|++.+
T Consensus 2 e~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPEgee~~~---kgaenlf~eI 78 (233)
T 2yko_A 2 ASLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDVENG---TKLENTLQDI 78 (233)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCCCTTCCH---HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCCCccccc---ccHHHHHHHH
Confidence 3455566677788888888888888888888888888888899999988877543 5555 22 3478899999
Q ss_pred HHHHH-HHHHhhhhhhh
Q 011828 317 ITENI-ELVEKVNDLSV 332 (476)
Q Consensus 317 ~~en~-~l~ekvneL~~ 332 (476)
+.||- .|. +-.+++|
T Consensus 79 I~EnfPnL~-ke~diqV 94 (233)
T 2yko_A 79 IQENFPNLA-RQANVQI 94 (233)
T ss_dssp HHHHCTTCC----CCCE
T ss_pred HHHhCCCCc-cccceee
Confidence 99883 442 3344433
No 114
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=53.95 E-value=9.6 Score=25.78 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhh
Q 011828 308 AAGALIDKLITENIELVEKVNDLSVKL 334 (476)
Q Consensus 308 ~a~~~v~kl~~en~~l~ekvneL~~~l 334 (476)
+..+++-.|-.||-.|+-||.+|..++
T Consensus 3 qlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888899999999999999997754
No 115
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=53.72 E-value=39 Score=24.82 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 190 LQKEAALEQKISQLRDESAALNMKR 214 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKL 214 (476)
..+.+.|+.++.-|.+++..|+|-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3344455666666677776666644
No 116
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.26 E-value=43 Score=25.86 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.+...|..+...|..+|..|..++..|+.++..|
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555554444433
No 117
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=51.88 E-value=9.9 Score=40.81 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 135 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 204 (476)
Q Consensus 135 EkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~ 204 (476)
++.+.++.+...+.++...+|.....|+.........+..|+.++..++..+.....+...=..+-.+|+
T Consensus 370 e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 439 (575)
T 2i1j_A 370 EQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQ 439 (575)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555555555556666666666655555555555555555555555544333333333333333
No 118
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.05 E-value=1.1e+02 Score=25.90 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011828 260 EESRNNLLQENRQLKENVSS 279 (476)
Q Consensus 260 eee~s~LeeEIq~LkeqIse 279 (476)
..+...+...+.+|+.+|.+
T Consensus 75 r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44455566666666666654
No 119
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=51.01 E-value=27 Score=27.08 Aligned_cols=42 Identities=24% Similarity=0.168 Sum_probs=35.5
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS 279 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIse 279 (476)
.+.++..|++.+.+|-.+|..|+.+.+..++||.-|..-+..
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999988766553
No 120
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.26 E-value=39 Score=25.67 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 011828 255 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH 294 (476)
Q Consensus 255 QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~ 294 (476)
++..|......|...+.+|...+..++..++.-..+...+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555554433
No 121
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=49.86 E-value=46 Score=29.70 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 118 LQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE 197 (476)
Q Consensus 118 LqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~Le 197 (476)
|=.|+.+...+|+....++ +.|++.+..+.++...++..+..++.+.. -+++.|+-... .|+
T Consensus 7 L~~ELqEsqskL~~Ae~~k-~~Leek~~~~e~~~~~~~~Elee~kqq~~----------~~~d~L~lQ~e-------sme 68 (130)
T 3cl3_D 7 SLGELQESQSRLEAATKEC-QALEGRARAASEQARQLESEREALQQQHS----------VQVDQLRMQGQ-------SVE 68 (130)
T ss_dssp ---------------------------------------------CTTT----------HHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHH-------HHH
Confidence 3345555666666666666 66666666666665555555444443221 22222222222 222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh
Q 011828 198 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 236 (476)
Q Consensus 198 peiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI 236 (476)
..+.-=+..-..-+.+|+.|...-..|-.|+|..|+..+
T Consensus 69 aalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 69 AALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222333566777777777777778888787777
No 122
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.31 E-value=49 Score=25.39 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 251 QLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
.|..++..|+.+...|..+|..|+..+..|
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333
No 123
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=49.06 E-value=79 Score=23.45 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 256 VVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIseL 280 (476)
...+...++.+.+.+...++.|..+
T Consensus 28 ~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 124
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=48.78 E-value=71 Score=27.25 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011828 198 QKISQLRDESAALNMKRASLEERLKLLEAD 227 (476)
Q Consensus 198 peiekL~~EeasLkQKLasLEeKL~~LKaE 227 (476)
.-+..|..+..++.+.+..-++++..++++
T Consensus 11 g~vkRL~KE~~~Y~kE~~~q~~riek~k~~ 40 (106)
T 1qsd_A 11 KALKRLTKEEGYYQQELKDQEAHVAKLKED 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446688889999999999999999999886
No 125
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.54 E-value=23 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011828 192 KEAALEQKISQLRDESAALNMKRASLEERLKL 223 (476)
Q Consensus 192 Ela~LepeiekL~~EeasLkQKLasLEeKL~~ 223 (476)
++..+..+++.|..++..|++..+.||.++.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888888888888888888876
No 126
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.51 E-value=1.1e+02 Score=24.79 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 178 NIANLQSEKEFWLQKEAALEQKISQL 203 (476)
Q Consensus 178 qIkqLe~EIs~~~qEla~LepeiekL 203 (476)
++..|..++.....++..+..+|..|
T Consensus 57 ~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 57 QTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 127
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=47.79 E-value=54 Score=34.77 Aligned_cols=37 Identities=14% Similarity=0.287 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011828 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
..|..++..|..++..++.+...+.+++..+-..|=+
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455555666666666666666665555555444433
No 128
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.66 E-value=61 Score=26.22 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=26.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011828 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
|..++..+....+++...+..+..++.+++.....|..|++.+..+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555555555555555555555555555553
No 129
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.51 E-value=54 Score=24.84 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 251 QLRMQVVELEESRNNLLQENRQLKENV 277 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~LkeqI 277 (476)
.|..++..|+.+...|..++..|+..+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443333333333333333333
No 130
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=47.42 E-value=1e+02 Score=26.58 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=5.7
Q ss_pred HHHHhhhHHHHHHHHH
Q 011828 239 KETIAGLSVDITQLRM 254 (476)
Q Consensus 239 ke~IssL~~~i~sLq~ 254 (476)
+..+..+......++.
T Consensus 36 KD~LEe~eE~~aql~R 51 (103)
T 4h22_A 36 KDMLLELEEQLAESRR 51 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 131
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=46.79 E-value=2.5e+02 Score=29.70 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhh
Q 011828 140 LQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 140 Lq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
|+..++++.+.-.....-|+.|+..
T Consensus 100 Le~~l~~isn~Ts~a~~~v~~ik~s 124 (461)
T 3ghg_B 100 LNNNVEAVSQTSSSSFQYMYLLKDL 124 (461)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444444444445555555543
No 132
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=46.20 E-value=52 Score=29.36 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 011828 200 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN 264 (476)
Q Consensus 200 iekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s 264 (476)
+..-..+...|..+...++.+++.+..|++. .-......+..|+.++..+++.+.
T Consensus 18 L~~Ae~~k~~Leek~~~~e~~~~~~~~Elee----------~kqq~~~~~d~L~lQ~esmeaalk 72 (130)
T 3cl3_D 18 LEAATKECQALEGRARAASEQARQLESEREA----------LQQQHSVQVDQLRMQGQSVEAALR 72 (130)
T ss_dssp -------------------------------------------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555555555555544 223344455555555555555443
No 133
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.73 E-value=23 Score=38.03 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 011828 172 EGGLEMNIANLQSEKEFWLQKE 193 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs~~~qEl 193 (476)
+..++.++.+++.+.......+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444444333
No 134
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=45.71 E-value=89 Score=25.42 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 174 ~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.+++++.+|+.-++...-++++|-.+|..-+ ..++|++..+|.++..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ---~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQ---QKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccc
Confidence 4778888888888888888888888887655 45688888888877765
No 135
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.58 E-value=1.7e+02 Score=30.02 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 197 EQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..+...+.++...++.++..+++++..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555544
No 136
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.04 E-value=92 Score=32.01 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHhHHHHHHHHHHhhhhHhhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011828 213 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 213 KLasLEeKL~~LKaERD~WLkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
+...+..++..|+++|+. +.++|.. ....+...|..++..+..++..++.+...+.+.+..+-..|=++
T Consensus 36 ~~r~~~~~~~~l~~~~n~-~sk~i~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 36 EVQELKKRLQEVQTERNQ-VAKRVPK-----APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHSSS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHh-----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334444555555666655 3344421 11233445566666666666666666666666666554444444
No 137
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=44.56 E-value=55 Score=25.78 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 011828 193 EAALEQKISQLRDESAALNMKRASLEERLKLLEADK 228 (476)
Q Consensus 193 la~LepeiekL~~EeasLkQKLasLEeKL~~LKaER 228 (476)
++.-++++.+|-..+..+.+.+.-++.++..|++|.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 444455555555555555555555555555555443
No 138
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=44.22 E-value=1.1e+02 Score=24.00 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 177 MNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (476)
Q Consensus 177 eqIkqLe~EIs~~~qEla~LepeiekL~~EeasL 210 (476)
.+|.+|=..+.....|+..|..++.+|..++..|
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 3444444444444444444444444444444443
No 139
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.17 E-value=38 Score=25.80 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 011828 264 NNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 264 s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
..|..++..|...+..|..++..|
T Consensus 32 ~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 32 KTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333
No 140
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.62 E-value=1.3e+02 Score=24.57 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 140 LQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 140 Lq~E~~d~lQk~A~LE~tIKdLks 163 (476)
|......+-.....++..+..|..
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444554443
No 141
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=43.49 E-value=63 Score=29.37 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011828 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 178 qIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
.+..|...+......+..++.++..+..+...+...+..|
T Consensus 67 ~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 67 ELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp TTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444445555555554444444444333
No 142
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.47 E-value=1.4e+02 Score=26.01 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011828 176 EMNIANLQSEKEFWLQKEAALE 197 (476)
Q Consensus 176 EeqIkqLe~EIs~~~qEla~Le 197 (476)
...|.+|+.+++.+..++..|.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666666655553
No 143
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=42.84 E-value=22 Score=31.28 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011828 245 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 245 L~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
....+.-|...+..++..+..+...+..++.++..+...++.+-.
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556666666666666666666666655555555443
No 144
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.59 E-value=70 Score=25.84 Aligned_cols=39 Identities=8% Similarity=-0.028 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011828 251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
.|..++..++..+..|+..+-.....|+.++.++..|..
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443333333333333333333333
No 145
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=41.73 E-value=1.8e+02 Score=28.40 Aligned_cols=13 Identities=8% Similarity=0.130 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 011828 118 LQNECDLYKEKVQ 130 (476)
Q Consensus 118 LqeEi~~lkqkLE 130 (476)
|..+...+.++|+
T Consensus 154 Lkk~~~~i~~~Le 166 (242)
T 3uux_B 154 LKSFSQTLVNSLE 166 (242)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444433
No 146
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.10 E-value=79 Score=25.51 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=21.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011828 239 KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 239 ke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
..+|..|...++-...-|..|...+.....+|..|+.++..|..++.++..
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444444444444455555555555555554443
No 147
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=40.63 E-value=1.3e+02 Score=24.35 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 011828 200 ISQLRDESAALNMKRASLEE 219 (476)
Q Consensus 200 iekL~~EeasLkQKLasLEe 219 (476)
++.|+..+++|...++.++.
T Consensus 5 ie~L~~q~~~Le~~l~e~E~ 24 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLED 24 (86)
T ss_dssp -------CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 148
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.43 E-value=57 Score=33.58 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011828 254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSS 286 (476)
Q Consensus 254 ~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqe 286 (476)
.++..+..++..++.+...+.+.+..+-..|=+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 107 (425)
T 2dq3_A 75 NRVKELKEEIDRLEEELRKVEEELKNTLLWIPN 107 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334444444444444444444444444333333
No 149
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.78 E-value=1.1e+02 Score=22.63 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011828 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEER 220 (476)
Q Consensus 174 ~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeK 220 (476)
.+++++.+|+.-++...-++++|-.+|..-+ ..++|++..+|.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq---~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQ---MKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 4677788888888887888888887777654 3456666666643
No 150
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=39.32 E-value=58 Score=32.80 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011828 253 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 253 q~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
..++..++..+.....+|+.|+..+..++.+|++|+.
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444433
No 151
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=39.10 E-value=3.9e+02 Score=28.60 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.3
Q ss_pred cCCceeeccCCCccchh
Q 011828 410 YSGEIVQIPLDDKEVQD 426 (476)
Q Consensus 410 ~~~eiv~~~ld~~~~~~ 426 (476)
.+|+.|+||=--+.+|+
T Consensus 326 ~nG~fV~InGSSV~~~d 342 (497)
T 3iox_A 326 YSGKFVKISGSSIGEKN 342 (497)
T ss_dssp CSSEEECBTTCSEEEET
T ss_pred cCCcEEEecCCeEEeCC
Confidence 46888999888777775
No 152
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=38.99 E-value=1.3e+02 Score=24.89 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011828 262 SRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 262 e~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
+++.-..+|+.|...|..+...|.+|+
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444443
No 153
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.98 E-value=1.6e+02 Score=24.12 Aligned_cols=51 Identities=22% Similarity=0.164 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011828 172 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK 222 (476)
Q Consensus 172 ea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~ 222 (476)
-..|-++-+-|.-..++.+.++..|..+.+-|+.+..++.+....++.++.
T Consensus 18 N~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 18 NTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555554444444444433
No 154
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.85 E-value=47 Score=25.28 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011828 247 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 283 (476)
Q Consensus 247 ~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~ 283 (476)
.-+..|..++..|+.+...|..++..|+..+..|...
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555566555555555443
No 155
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.56 E-value=1.1e+02 Score=23.37 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=23.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 241 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 241 ~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
++..++.++..|+.++..-.+.++-|+.+--.+++-+..++
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 44555555566666666655555555555555555555443
No 156
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=38.35 E-value=1.8e+02 Score=24.64 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hhhH
Q 011828 197 EQKISQLRDESAALNMKRASLEERLKLLEAD-KDSW 231 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~~LKaE-RD~W 231 (476)
..-+..|..+..++.+.+..-++++..++++ .|.|
T Consensus 13 t~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey 48 (108)
T 1h7c_A 13 TGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENY 48 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 4456788889999999999999999999875 5554
No 157
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=38.29 E-value=3.6e+02 Score=28.03 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011828 137 IQQLQRQNDLRMQKEATLEETIKQLRNQ 164 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~ 164 (476)
|.+|+..++++.+.-......|+.|+..
T Consensus 40 l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 40 LQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 3556666666666667777777777664
No 158
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.13 E-value=3.6e+02 Score=28.51 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 197 EQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..+...|.++...+..++..+++++..+
T Consensus 122 ~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 122 RARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555443
No 159
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=38.13 E-value=2.9e+02 Score=28.06 Aligned_cols=122 Identities=12% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011828 87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 87 ~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tIKdLks~~e 166 (476)
.+.+-+..-.+.+|..+-.|--..+.++|+-.++++....+-.+.-+..- .....-..+..+..--..|++.+.
T Consensus 142 ~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~------~~~~~~~e~~~~~~n~~~l~~~~~ 215 (373)
T 3hhm_B 142 YDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKF------KREGNEKEIQRIMHNYDKLKSRIS 215 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hhhcChHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 167 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR 214 (476)
Q Consensus 167 s~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKL 214 (476)
...+.+..|++.|+.-...+-....++..++|++-+|....+.+..-|
T Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L 263 (373)
T 3hhm_B 216 EIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWL 263 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
No 160
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.64 E-value=1.9e+02 Score=24.57 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011828 254 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE 288 (476)
Q Consensus 254 ~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLe 288 (476)
.+|..++..++....+.-.+..++..+......|.
T Consensus 68 ~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 68 RELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555554444444443
No 161
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=37.40 E-value=2.1e+02 Score=25.11 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011828 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLE 218 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLE 218 (476)
|......|.............+.+++..|...+..|..++..+.
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555455556666666666666655554444444
No 162
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.12 E-value=1.8e+02 Score=30.76 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011828 249 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 249 i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
...|..++..+..++..++.+...+.+++..+-..|=++
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344555556666666666666666655555554444443
No 163
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=36.56 E-value=53 Score=23.35 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011828 137 IQQLQRQNDLRMQKEATLEETIKQLRNQND 166 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~e 166 (476)
+.||++..+.++.+...++..+..|+.-+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 466666666666666666666666665443
No 164
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=36.30 E-value=92 Score=29.42 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=9.5
Q ss_pred cCCceeeccCCCc
Q 011828 410 YSGEIVQIPLDDK 422 (476)
Q Consensus 410 ~~~eiv~~~ld~~ 422 (476)
...||+-+|+=+-
T Consensus 128 ~~~e~~Y~P~l~~ 140 (190)
T 4emc_A 128 QVTEVIYAPVLKQ 140 (190)
T ss_dssp -CCEEEEEECCSS
T ss_pred CCceEEEeccccc
Confidence 3679999998654
No 165
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=36.23 E-value=1.6e+02 Score=23.90 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 255 QVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 255 QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
..+.|..++-++.=|+.-|++++.
T Consensus 47 d~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 47 NTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHhhHHHHHhHHHHHHHHHHHH
Confidence 344444444445545444444433
No 166
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=36.09 E-value=1.9e+02 Score=24.15 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 136 TIQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
.|..+...+.-+-...+.--|+.+.+..
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q 49 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQ 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3455555566666667777788887765
No 167
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.99 E-value=39 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011828 137 IQQLQRQNDLRMQKEATLEETIKQLRNQNDL 167 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks~~es 167 (476)
+.||++..+.++.....+|..+..|+.-+..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3566666666666666666666666654443
No 168
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.75 E-value=72 Score=32.16 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.0
Q ss_pred hhhhhhh
Q 011828 328 NDLSVKL 334 (476)
Q Consensus 328 neL~~~l 334 (476)
.+|.|.|
T Consensus 164 ~eLrI~L 170 (323)
T 1lwu_C 164 YRLRIDL 170 (323)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 3444433
No 169
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=35.54 E-value=4.4e+02 Score=28.13 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=61.3
Q ss_pred ccCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011828 59 DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQATLEETIQ 138 (476)
Q Consensus 59 ~~~~~~~~~~~~~~~~e~~~~~~~q~e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIk 138 (476)
|...-||+|-.. ++.++..|= -+--+|..|++-.+.+.|.-. .+..+...+...+..+.+
T Consensus 41 DwGvkCPSGCrL-------qglL~kqer--dv~~rI~kLkn~L~~~s~s~~-----------~s~~y~~~~~~~lk~~~~ 100 (491)
T 1m1j_A 41 DWGTKCPSGCRM-------QGIIDDTDQ--NYSQRIDNIRQQLADSQNKYK-----------TSNRVIVETINILKPGLE 100 (491)
T ss_dssp STTTEECCSTTH-------HHHHHHHHH--HHHHHHHHHHHHHHHHHHTTT-----------HHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCccch-------hhHHHHhhh--hHHHHHHHHHHHHHHHHhhcc-----------hHHHHHHHHHHHHHHHHh
Confidence 677789999641 223333333 445566666666655544333 333334444444555545
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011828 139 QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 139 QLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
|..+--+-+-+--..||.+|..|+..+....++-..|..-|..+..+|.
T Consensus 101 q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQ 149 (491)
T 1m1j_A 101 GAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMK 149 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444455555677888888888777777665555555555554444
No 170
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=34.99 E-value=72 Score=22.68 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 179 IANLQSEKEFWLQKEAALEQKISQLRDE 206 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~E 206 (476)
+++|+..+...+.+...|+.+...|+.-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 171
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=34.74 E-value=2.4e+02 Score=25.77 Aligned_cols=105 Identities=10% Similarity=0.106 Sum_probs=50.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHH
Q 011828 108 EATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ----KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ 183 (476)
Q Consensus 108 e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ----k~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe 183 (476)
+.|-+..+.+|..-+.....-++.-.+-+ .||-.++...+. --.-++.-|.++.+ ..+.-..++.+|.+++
T Consensus 15 ~l~G~~Sl~qL~nrla~~~am~~sqqq~~-eqlS~eFqtal~eAq~Atd~ye~ai~n~~s----A~~~~d~lekKl~~aq 89 (158)
T 3tul_A 15 TLLGDVSLSQLESRLAVWQAMIESQKEMG-IQVSKEFQTALGEAQEATDLYEASIKKTDT----AKSVYDAATKKLTQAQ 89 (158)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHT-C--CCTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHHHHH
Confidence 45667777888888888877776666655 555555554444 22233333333333 2222223333343333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011828 184 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL 221 (476)
Q Consensus 184 ~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL 221 (476)
...+ .|+-=.|+|.+++.....+.....+....+
T Consensus 90 ~kL~----~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~ 123 (158)
T 3tul_A 90 NKLQ----SLDPADPGYAQAEAAVEQAGKEATEAKEAL 123 (158)
T ss_dssp HHHT----TC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh----cCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 223334567666666666655555544433
No 172
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.52 E-value=76 Score=21.70 Aligned_cols=20 Identities=45% Similarity=0.426 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011828 190 LQKEAALEQKISQLRDESAA 209 (476)
Q Consensus 190 ~qEla~LepeiekL~~Eeas 209 (476)
.|+++.++.++..|+=+.+.
T Consensus 8 kqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 173
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.26 E-value=97 Score=27.10 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=22.0
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 238 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRS 282 (476)
Q Consensus 238 Lke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs 282 (476)
+.+-+.-++..+..|...+..++..+..+...+..+...+..+..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555555555555555555444443
No 174
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=33.57 E-value=2.3e+02 Score=24.32 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=7.0
Q ss_pred HHHhHHHHHHHHHHh
Q 011828 213 KRASLEERLKLLEAD 227 (476)
Q Consensus 213 KLasLEeKL~~LKaE 227 (476)
++..|+.++.+|.+|
T Consensus 66 ~v~eLe~everL~~E 80 (104)
T 3s9g_A 66 RVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444333
No 175
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=33.44 E-value=1.8e+02 Score=30.85 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011828 256 VVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
+..+..++..++.+...+.+++..+-..|
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~i 141 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNV 141 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444555555555555554444443333
No 176
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=33.31 E-value=2.5e+02 Score=25.26 Aligned_cols=46 Identities=24% Similarity=0.162 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHH
Q 011828 85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVQ 130 (476)
Q Consensus 85 e~~~~~eeti~~l~~e~d~~~~~e~~~Ek~IkqLqeEi~~lkqkLE 130 (476)
+|...+++=.+.|..|.+...|-..+|+..+..+++.+...+..++
T Consensus 79 eA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~le 124 (152)
T 4fla_A 79 EACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLE 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777777777777777777777666666666543
No 177
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.07 E-value=1.6e+02 Score=22.61 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 182 LQSEKEFWLQKEAALEQKISQLRDESAALNMK 213 (476)
Q Consensus 182 Le~EIs~~~qEla~LepeiekL~~EeasLkQK 213 (476)
|+.+......+-..|..++..|..+...|++-
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444555555555443
No 178
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=33.05 E-value=1.9e+02 Score=23.27 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 011828 138 QQLQRQNDLRMQKEATLEETIKQLR 162 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLk 162 (476)
..+..+++++.++.-.++..+..++
T Consensus 7 ~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 7 ANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 179
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.93 E-value=88 Score=32.00 Aligned_cols=45 Identities=27% Similarity=0.144 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 180 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 180 kqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..|+.++....++...+..+++.+..+...+.+++..-+..++.|
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455555555555555555555555
No 180
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.68 E-value=1e+02 Score=26.55 Aligned_cols=33 Identities=12% Similarity=0.311 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Q 011828 199 KISQLRDESAALNMKRASLEERLKLLEADKDSW 231 (476)
Q Consensus 199 eiekL~~EeasLkQKLasLEeKL~~LKaERD~W 231 (476)
++...+.+...|.+++..+...+..|..|||-+
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFY 44 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEIEREFY 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444445555555555555553
No 181
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=32.16 E-value=60 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 179 IANLQSEKEFWLQKEAALEQKISQLRDE 206 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~E 206 (476)
++||+..+...+.+...|..+...|+..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444554444444444444444443
No 182
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.13 E-value=2.9e+02 Score=25.00 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 177 MNIANLQSEKEFWLQKEAALEQKISQL 203 (476)
Q Consensus 177 eqIkqLe~EIs~~~qEla~LepeiekL 203 (476)
.+..+|+.....|..+++.|.+++..+
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~ 72 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTA 72 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 346667777777777776665555443
No 183
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.13 E-value=83 Score=23.72 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 198 QKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 198 peiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.+++.|+.+++.|+.+...|.+++..|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444444444433
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.06 E-value=1.1e+02 Score=31.28 Aligned_cols=32 Identities=16% Similarity=-0.001 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 179 IANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (476)
Q Consensus 179 IkqLe~EIs~~~qEla~LepeiekL~~EeasL 210 (476)
|+.++.++....+++..-+....+|+++...+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 26 IKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333333333333334444444333
No 185
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.83 E-value=78 Score=23.81 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=26.6
Q ss_pred hhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 234 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ 268 (476)
Q Consensus 234 kEI-sLke~IssL~~~i~sLq~QVe~Leee~s~Lee 268 (476)
+|. .|+.-+.++..+++.|..+|..|+..+.+|+.
T Consensus 17 kenaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 455 77777888888888888888888777777654
No 186
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.73 E-value=1.2e+02 Score=25.06 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 191 QKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 191 qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
++...+..++..|..+|..|+.++..|+.++..|
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555444444433
No 187
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=31.19 E-value=2.5e+02 Score=28.17 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HhHHHHH
Q 011828 157 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR---------------ASLEERL 221 (476)
Q Consensus 157 tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKL---------------asLEeKL 221 (476)
+|.+|........+.+..+..+..+|+.+|.. +....|.|.+.......|.... ..|+.+
T Consensus 4 ~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~----L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E- 78 (302)
T 3ibp_A 4 MIASLSDSVSNAREERMALRQEQEQLQSRIQS----LMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE- 78 (302)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-
Q ss_pred HHHHHhhhhHhhhhhchHHHHhhhHH
Q 011828 222 KLLEADKDSWTQMESVSKETIAGLSV 247 (476)
Q Consensus 222 ~~LKaERD~WLkkEIsLke~IssL~~ 247 (476)
+.+..+||......-.|...|..|.+
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
No 188
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.03 E-value=48 Score=26.41 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 251 QLRMQVVELEESRNNLLQENRQLKENVSS 279 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~LkeqIse 279 (476)
.|+.++..|+.++..|..++..|+.++..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555443
No 189
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.03 E-value=1.7e+02 Score=22.01 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 181 NLQSEKEFWLQKEAALEQKISQLRDESAALNM 212 (476)
Q Consensus 181 qLe~EIs~~~qEla~LepeiekL~~EeasLkQ 212 (476)
.|+.....+..+-..|..++..|..+...|++
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444433
No 190
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=30.57 E-value=67 Score=27.06 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011828 144 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 144 ~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
....++....+.-++-+|+.. |..-+..-+++|.+|+.+++
T Consensus 45 i~~Qi~Emq~Ir~tvyeLE~~---h~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 45 MNQQLAEMQQIRNTVYERELT---HRKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555442 34444445555555555544
No 191
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=30.55 E-value=3.3e+02 Score=25.17 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=25.7
Q ss_pred HhhhhHhhhhhchHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 226 ADKDSWTQMESVSKETIA----GLSVDITQLRMQVVELEESRNNLLQENRQLKE 275 (476)
Q Consensus 226 aERD~WLkkEIsLke~Is----sL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke 275 (476)
..++.|+...-.++..|. .++.....|+..+..|+.+...+...+..+..
T Consensus 31 ~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 31 YVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566555555544433 33333444555555555555555555555555
No 192
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.06 E-value=59 Score=22.86 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 137 IQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
+.||++..+.+++....+|..+..|+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456666666666666666666666655
No 193
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.79 E-value=95 Score=23.38 Aligned_cols=27 Identities=33% Similarity=0.650 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 249 ITQLRMQVVELEESRNNLLQENRQLKE 275 (476)
Q Consensus 249 i~sLq~QVe~Leee~s~LeeEIq~Lke 275 (476)
...|+.+...|+.....|..++++|+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 194
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=29.72 E-value=1.6e+02 Score=21.57 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011828 262 SRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 262 e~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
++..++.+.|.|...+..+.+.++.+
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555554444443
No 195
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.68 E-value=1.9e+02 Score=30.13 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011828 250 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSD 287 (476)
Q Consensus 250 ~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeL 287 (476)
..|..++..+..++..++.+...+.+.+..+-..|=++
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555556666666655555554444443
No 196
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.59 E-value=2.4e+02 Score=23.00 Aligned_cols=8 Identities=38% Similarity=0.297 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 011828 219 ERLKLLEA 226 (476)
Q Consensus 219 eKL~~LKa 226 (476)
.+.+.++.
T Consensus 55 ~rQrd~Y~ 62 (83)
T 2xdj_A 55 ERQKQILL 62 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 197
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=28.48 E-value=1.6e+02 Score=27.79 Aligned_cols=107 Identities=8% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhhhh-HHHHHhhhHHHHHHHHHHHHHH
Q 011828 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQ-KEATLEETIKQLRNQND-LHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQ-k~A~LE~tIKdLks~~e-s~~Qkea~LEeqIkqLe~EIs~ 188 (476)
+...+..|+..+.-+...+...+...+..++..+.-... -.+++...+.+|+..+. ....-+..+...+..|+..+.-
T Consensus 130 ~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p 209 (243)
T 2a01_A 130 ARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKP 209 (243)
T ss_dssp HHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Q 011828 189 WLQKE-AALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 189 ~~qEl-a~LepeiekL~~EeasLkQKLasL 217 (476)
....+ +.|.|-++.++..-..+-+++...
T Consensus 210 ~~e~lk~~l~p~~e~~~~~l~~~~e~~~~~ 239 (243)
T 2a01_A 210 ALEDLRQGLLPVLESFKVSFLSALEEYTKK 239 (243)
T ss_dssp HHHHSSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
No 198
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.46 E-value=2.3e+02 Score=30.02 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENV 277 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqI 277 (476)
.+......|..+++.|+.+...++.++..+.-.|
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555666666666666666666666655444
No 199
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.38 E-value=2.6e+02 Score=23.24 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 011828 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 192 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qE 192 (476)
.|++++...+.+-.-+..|+..+..+- ...+..+..+|+.+++++..+..+
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~p------~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYAP------LTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSC------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666666666666777777776663 244667888888888887765544
No 200
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=28.29 E-value=2.1e+02 Score=22.82 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 174 ~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
.+...|..|+.++.....+++....+|..|.+..-.|...++
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555566666666555544443
No 201
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.93 E-value=1.1e+02 Score=24.45 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 011828 202 QLRDESAALNMKRASLEERLKL 223 (476)
Q Consensus 202 kL~~EeasLkQKLasLEeKL~~ 223 (476)
.|..++..|...+..|..++..
T Consensus 47 ~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
No 202
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=27.87 E-value=68 Score=26.03 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011828 251 QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 289 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~lqeLee 289 (476)
.|...|+.++..+..+..++..++..|.+++..++.|+.
T Consensus 5 Gl~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 5 GLTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 344456666666666666667777777777777777764
No 203
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.70 E-value=2.8e+02 Score=23.50 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 011828 154 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 188 (476)
Q Consensus 154 LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~ 188 (476)
.+..++.|...+......+...+.....++.++..
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555556665555553
No 204
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=27.67 E-value=58 Score=24.65 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011828 194 AALEQKISQLRDESAALNMKRASLEERL 221 (476)
Q Consensus 194 a~LepeiekL~~EeasLkQKLasLEeKL 221 (476)
..+...|+.|..++..|+.++..+++++
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778888888888888888776653
No 205
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.54 E-value=1.2e+02 Score=22.17 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 174 GLEMNIANLQSEKEFWLQKEAALEQKISQLRD 205 (476)
Q Consensus 174 ~LEeqIkqLe~EIs~~~qEla~LepeiekL~~ 205 (476)
.|-++|..+-.+|++-.++++.+..++..|.+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655555555543
No 206
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.48 E-value=2.5e+02 Score=22.88 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 178 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 178 qIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
++..|+..+....+-+..|--++..|..+.+.|...+..+.=.+..+
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444333333333334444444444444444444444444444433
No 207
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.61 E-value=3.2e+02 Score=28.40 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 197 EQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 197 epeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
..+...|.++...++.++..+++++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555566666544
No 208
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.46 E-value=2.1e+02 Score=21.64 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 175 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA 215 (476)
Q Consensus 175 LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLa 215 (476)
++..|..|+.++.....+++....+|..|.+..-.|...++
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45556666666666666666677777777777766655544
No 209
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.40 E-value=69 Score=22.55 Aligned_cols=27 Identities=7% Similarity=0.273 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 137 IQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
+.||++..+.++++...++..+..|+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 456666666666666666666666654
No 210
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.16 E-value=2e+02 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011828 251 QLRMQVVELEESRNNLLQENRQL 273 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~L 273 (476)
.|...|..++.++..+.++++.|
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333
No 211
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=26.11 E-value=4.7e+02 Score=25.81 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh
Q 011828 82 LQREAMAILEETVKHLRNERESHI 105 (476)
Q Consensus 82 ~q~e~~~~~eeti~~l~~e~d~~~ 105 (476)
++|-|++.|.|||+-++++...+.
T Consensus 50 ~k~~a~~af~~~~~~f~~q~~~qe 73 (302)
T 2y3a_B 50 MKRTAIEAFNETIKIFEEQGQTQE 73 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666653
No 212
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=25.84 E-value=3.7e+02 Score=24.21 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=4.8
Q ss_pred HHhHHHHHHHHHH
Q 011828 130 QATLEETIQQLQR 142 (476)
Q Consensus 130 E~llqEkIkQLq~ 142 (476)
..++.+.+..+..
T Consensus 61 ~~~l~~~ld~l~~ 73 (165)
T 1gs9_A 61 RALMDETMKELKA 73 (165)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 213
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=25.63 E-value=1.8e+02 Score=23.56 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011828 190 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 190 ~qEla~LepeiekL~~EeasLkQKLasLEeKL~~L 224 (476)
.++...+..++..|..+|..|..++..|+.++..|
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666555555544
No 214
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=25.59 E-value=3.2e+02 Score=23.44 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 138 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES 207 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~Ee 207 (476)
-||+++...++=.+-.+...+.+++ +.+.+++++...+..++..++-.+..|+.+.
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~e--------------E~~aql~Re~~eK~re~e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELE--------------EQLAESRRQYEEKNKEFEREKHAHSILQFQF 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444444444333 3355555555555555444444444444443
No 215
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.22 E-value=81 Score=22.19 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 137 IQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
+.||++..+.++++...++.....|++
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456666666666666666666666654
No 216
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.08 E-value=1.4e+02 Score=24.62 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011828 262 SRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 262 e~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
....|..+|..|+.+|..|..+++.|..-
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 217
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=24.90 E-value=1.8e+02 Score=24.12 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=23.6
Q ss_pred hhhhhchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 232 TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR 281 (476)
Q Consensus 232 LkkEIsLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLq 281 (476)
+.+|+.+++--..+.......+.+...+..++......++.|+..+.+|.
T Consensus 34 I~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 34 IRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444443333333344444555555555555555555443
No 218
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.82 E-value=1e+02 Score=21.14 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 011828 266 LLQENRQLKENVSSL 280 (476)
Q Consensus 266 LeeEIq~LkeqIseL 280 (476)
|..=+|.|++.++.|
T Consensus 11 l~~ivq~lq~r~drl 25 (32)
T 2akf_A 11 LNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 219
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.52 E-value=1.4e+02 Score=24.22 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011828 258 ELEESRNNLLQENRQLKENVSSLRSQLSSDESK 290 (476)
Q Consensus 258 ~Leee~s~LeeEIq~LkeqIseLqs~lqeLeee 290 (476)
.++.....|..+|..|+..|..|...+..|..-
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555443
No 220
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.39 E-value=2.7e+02 Score=22.24 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 011828 199 KISQLRDESAALNMKRASLEERL 221 (476)
Q Consensus 199 eiekL~~EeasLkQKLasLEeKL 221 (476)
+++.++..+++|...++.++...
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~ 24 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENF 24 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655555554443
No 221
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=24.05 E-value=4.5e+02 Score=24.67 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011828 217 LEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQV 256 (476)
Q Consensus 217 LEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QV 256 (476)
+-+++..+..++.. .|. -+.+.+.-||.--..++.+-
T Consensus 158 l~~qlE~~v~~K~~---~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 158 VQGRFEKAVSAKEA---LETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444444 343 44455555554444444443
No 222
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.87 E-value=3e+02 Score=22.54 Aligned_cols=57 Identities=7% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHH
Q 011828 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-WLQKEAAL 196 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~-~~qEla~L 196 (476)
.|++.+...+.+-.-+..|+..+..+-. ....++.+..+|+.+++++.. +..++..+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~----p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIG----DASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666667777777776620 112356777778888877777 66665544
No 223
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.83 E-value=1.1e+02 Score=21.35 Aligned_cols=21 Identities=19% Similarity=0.041 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011828 181 NLQSEKEFWLQKEAALEQKIS 201 (476)
Q Consensus 181 qLe~EIs~~~qEla~Lepeie 201 (476)
||+..+.....+...+..++.
T Consensus 4 QLEdKVEell~~~~~le~EV~ 24 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 333333333333333333333
No 224
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.70 E-value=64 Score=21.36 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=13.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q 011828 242 IAGLSVDITQLRMQVVELEESRNNL 266 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~s~L 266 (476)
|.++++.++.|..++..|+-++..|
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3455555566666666655555444
No 225
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.49 E-value=2.3e+02 Score=21.34 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=13.3
Q ss_pred HHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHH
Q 011828 156 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 187 (476)
Q Consensus 156 ~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs 187 (476)
.++.+|+..+.....+-..|.+.++.-+.+|.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~ 40 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLL 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 226
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.48 E-value=1.1e+02 Score=21.43 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 011828 181 NLQSEKEFWLQKEA 194 (476)
Q Consensus 181 qLe~EIs~~~qEla 194 (476)
+|+..+.....+..
T Consensus 5 QLEdKVEeLl~~~~ 18 (34)
T 3c3f_A 5 QIEXKLEXILSXLY 18 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 33333333333333
No 227
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.43 E-value=49 Score=21.90 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 011828 204 RDESAALNMKRASLEERLKLL 224 (476)
Q Consensus 204 ~~EeasLkQKLasLEeKL~~L 224 (476)
.=++..|+|+++.+..++..|
T Consensus 6 efendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHh
Confidence 334445555555554444433
No 228
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.38 E-value=1.1e+02 Score=22.90 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011828 256 VVELEESRNNLLQENRQLKENVSSLRSQL 284 (476)
Q Consensus 256 Ve~Leee~s~LeeEIq~LkeqIseLqs~l 284 (476)
+..|+.....|..+|..|+.++..|+..+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666666666666655443
No 229
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.37 E-value=3.2e+02 Score=22.66 Aligned_cols=6 Identities=17% Similarity=-0.186 Sum_probs=0.7
Q ss_pred HHHHHh
Q 011828 158 IKQLRN 163 (476)
Q Consensus 158 IKdLks 163 (476)
|..|+.
T Consensus 14 ~~~Lq~ 19 (95)
T 3mov_A 14 YFQGQK 19 (95)
T ss_dssp ----CC
T ss_pred HHHHHH
Confidence 333333
No 230
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.97 E-value=3.9e+02 Score=23.61 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhh
Q 011828 271 RQLKENVSSLRSQLSSDESKKLQH 294 (476)
Q Consensus 271 q~LkeqIseLqs~lqeLeeei~~~ 294 (476)
..|...+++|+..+..++.+++..
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~ 87 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAA 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666666555543
No 231
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.51 E-value=2e+02 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 011828 198 QKISQLRDESAALNMKRASL 217 (476)
Q Consensus 198 peiekL~~EeasLkQKLasL 217 (476)
-+|..+++.-..|-.+++..
T Consensus 48 h~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 48 HTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 35666666665555555543
No 232
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=22.50 E-value=1.3e+02 Score=25.18 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 244 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVS 278 (476)
Q Consensus 244 sL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIs 278 (476)
.|..++..|..++..|..+...+..+++.++....
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 233
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.41 E-value=1.1e+02 Score=23.56 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 248 DITQLRMQVVELEESRNNLLQENRQLKE 275 (476)
Q Consensus 248 ~i~sLq~QVe~Leee~s~LeeEIq~Lke 275 (476)
-+..|..+|..|+.+...|..++..|++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444444443
No 234
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.19 E-value=60 Score=32.66 Aligned_cols=42 Identities=29% Similarity=0.235 Sum_probs=19.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011828 242 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ 283 (476)
Q Consensus 242 IssL~~~i~sLq~QVe~Leee~s~LeeEIq~LkeqIseLqs~ 283 (476)
|..++..+..+..++..|+..+..+...|+.|..+|..|...
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555544433
No 235
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.13 E-value=87 Score=21.93 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 138 QQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
.||++..+.++...+.++..+..|++
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46666666666666666666666665
No 236
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.59 E-value=2.8e+02 Score=23.82 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011828 176 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 217 (476)
Q Consensus 176 EeqIkqLe~EIs~~~qEla~LepeiekL~~EeasLkQKLasL 217 (476)
..++.+.+.++..+.+++..++..+..|..+.+.+=.||...
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666666666666666666666555
No 237
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.24 E-value=1.3e+02 Score=24.40 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 251 QLRMQVVELEESRNNLLQENRQLKENVSSL 280 (476)
Q Consensus 251 sLq~QVe~Leee~s~LeeEIq~LkeqIseL 280 (476)
.|+.+...+..++..|..+++.|+.++..|
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455555566665555544
No 238
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.14 E-value=3.5e+02 Score=22.32 Aligned_cols=53 Identities=8% Similarity=0.090 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 011828 136 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA 194 (476)
Q Consensus 136 kIkQLq~E~~d~lQk~A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla 194 (476)
.|++++..++.+-.-+..|++.+..+-. ..+..+..+|+.+++++..+..++.
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~r~~p~------~~R~~~~~klr~Yk~dL~~lk~elk 91 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEVREIPP------QSRGMYSNRMRSYKQEMGKLETDFK 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCT------TTHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCH------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666677777777776632 3466777888888888776555543
No 239
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.04 E-value=5.7e+02 Score=24.69 Aligned_cols=208 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHH
Q 011828 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKE-ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 189 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~-A~LE~tIKdLks~~es~~Qkea~LEeqIkqLe~EIs~~ 189 (476)
+.+.+..|+..+.-+..++...+...+..++..+.-+..+. +.+...+.+|+.. |.-=...|+..+..+
T Consensus 42 l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~----------L~p~~eelr~kl~~~ 111 (273)
T 3s84_A 42 IGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQAS----------LRPHADELKAKIDQN 111 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----------HHHHHHHHHHHHHhh
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHH--HHhhhhHhhhhh--chHHHHhhhHHHHHHH
Q 011828 190 LQKE-AALEQKISQLRDESAALNMKRA------------SLEERLKLL--EADKDSWTQMES--VSKETIAGLSVDITQL 252 (476)
Q Consensus 190 ~qEl-a~LepeiekL~~EeasLkQKLa------------sLEeKL~~L--KaERD~WLkkEI--sLke~IssL~~~i~sL 252 (476)
..++ ..+.|=.+.++......-+.+. .+...+..| +=.+.. .++ .+...+..++..+.-.
T Consensus 112 veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a---~~L~~~l~~~~eeLr~~L~p~ 188 (273)
T 3s84_A 112 VEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNA---EELKARISASAEELRQRLAPL 188 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhhhHHH-HHHhHHHHHHHHHHHHHHh
Q 011828 253 RMQV-----VELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIE-AAGALIDKLITENIELVEK 326 (476)
Q Consensus 253 q~QV-----e~Leee~s~LeeEIq~LkeqIseLqs~lqeLeeei~~~~~~~~e~~~~qie-~a~~~v~kl~~en~~l~ek 326 (476)
-..+ ..++.=...+..-..+++.++.+++.++.-.-..+-.+.+-.-++++.++. .++.+=++|----.+|..|
T Consensus 189 ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l~~~~~~~~~~~~~~~~d~~~~ 268 (273)
T 3s84_A 189 AEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDVEGHLSFLEKDLRDK 268 (273)
T ss_dssp HHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCC------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhCcchhhHHhhhhHHHHHHHHH
Q ss_pred hhhhh
Q 011828 327 VNDLS 331 (476)
Q Consensus 327 vneL~ 331 (476)
||..+
T Consensus 269 ~~~~~ 273 (273)
T 3s84_A 269 VNSFF 273 (273)
T ss_dssp -----
T ss_pred hhccC
No 240
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=21.00 E-value=1.8e+02 Score=23.60 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 240 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 275 (476)
Q Consensus 240 e~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~Lke 275 (476)
..+..++..|+++..+|..++..+.+++..|+.|..
T Consensus 8 nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeeccccchhhhhhhhhHHHHh
Confidence 356777788888888888888888888888888864
No 241
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.96 E-value=5.2e+02 Score=24.24 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=8.3
Q ss_pred HHHHHHHHHhHHHHHHHHHh
Q 011828 144 NDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 144 ~~d~lQk~A~LE~tIKdLks 163 (476)
+..+..+...++.++++|..
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~ 160 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQG 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443
No 242
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.91 E-value=2.5e+02 Score=20.57 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=8.4
Q ss_pred HHhHHHHHHHHHhhhhHHH
Q 011828 151 EATLEETIKQLRNQNDLHI 169 (476)
Q Consensus 151 ~A~LE~tIKdLks~~es~~ 169 (476)
+|.+|-.++.|+++++...
T Consensus 5 vaqlenevaslenenetlk 23 (49)
T 3he5_A 5 VAQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHH
Confidence 3444444444444444433
No 243
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.89 E-value=1.5e+02 Score=20.75 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 138 QQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 138 kQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
.||++..+.++++...+|..+..|++
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56666666666666666666666654
No 244
>2nnu_B HUNK1 protein, bromodomain-containing protein 4; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Homo sapiens}
Probab=20.86 E-value=49 Score=21.94 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 011828 79 QHLLQREAMAILEETV 94 (476)
Q Consensus 79 ~~~~q~e~~~~~eeti 94 (476)
+|.+|-..|++|||.+
T Consensus 6 DMn~QSDlMa~FEenL 21 (26)
T 2nnu_B 6 DMNFQSDLLSIFEENL 21 (26)
T ss_pred cchhHHHHHHHHHHHh
Confidence 5889999999999976
No 245
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.74 E-value=1e+02 Score=21.66 Aligned_cols=27 Identities=11% Similarity=0.354 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011828 137 IQQLQRQNDLRMQKEATLEETIKQLRN 163 (476)
Q Consensus 137 IkQLq~E~~d~lQk~A~LE~tIKdLks 163 (476)
+.||++..+.++.+...+|..+..|+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356666667777777777766666665
No 246
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.64 E-value=1.7e+02 Score=21.50 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011828 188 FWLQKEAALEQKISQLRDESAALNMKRASLEE 219 (476)
Q Consensus 188 ~~~qEla~LepeiekL~~EeasLkQKLasLEe 219 (476)
.+.|++..+..+|.+..+..+.|..++..|++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777666666666666665554
No 247
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=20.63 E-value=4.4e+02 Score=23.26 Aligned_cols=20 Identities=10% Similarity=0.343 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 011828 110 TLEGTVQQLQNECDLYKEKV 129 (476)
Q Consensus 110 ~~Ek~IkqLqeEi~~lkqkL 129 (476)
-++..|..|+.+...+...+
T Consensus 10 ~l~~KvAElekkv~~lek~l 29 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQEL 29 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444443
No 248
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.52 E-value=1.5e+02 Score=22.11 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011828 111 LEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLR 147 (476)
Q Consensus 111 ~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~ 147 (476)
.|..+.+|+.+|+.+..+|..-. ++.+.+..+.+..
T Consensus 10 AERsV~KLek~ID~LEdeL~~eK-ek~~~i~~eLD~t 45 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQK-LKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
Confidence 45666666666666666654322 2224444444443
No 249
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=20.32 E-value=83 Score=28.57 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHhhhhh-chHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 195 ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQL 273 (476)
Q Consensus 195 ~LepeiekL~~EeasLkQKLasLEeKL~~LKaERD~WLkkEI-sLke~IssL~~~i~sLq~QVe~Leee~s~LeeEIq~L 273 (476)
.-.|+|.-+.... .|...+..+++-...|+.+++.|++ .+ +++..|..+-..|..-...-.........+....+++
T Consensus 63 khkPRi~g~~kv~-~L~~~~~~~~~i~~~Lk~~k~k~~~-~v~~~~~~i~~~i~kIK~~~i~~~~Id~~y~~lv~~~~~~ 140 (148)
T 3gn4_A 63 RHKPRIDGLVKVG-TLKKRLDKFNEVVSALKDGKQEMSK-QVKDLEISIDALMAKIKSTMMTREQIQKEYDALVKSSAVL 140 (148)
T ss_dssp HHHHHHHHHHHHH-HHHHC--------------CCHHHH-HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467776666544 5667788888888889889999887 44 6666666654444422222223444444444444443
No 250
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.07 E-value=8e+02 Score=26.46 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhh--hHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011828 81 LLQREAMAILEETVKHLRNERESHIQ--KEATLEGTVQQLQNECDLYKEKVQATLEETIQQLQRQNDLRMQKEATLEETI 158 (476)
Q Consensus 81 ~~q~e~~~~~eeti~~l~~e~d~~~~--~e~~~Ek~IkqLqeEi~~lkqkLE~llqEkIkQLq~E~~d~lQk~A~LE~tI 158 (476)
|+|... .=..-||..+++-+.|+. ....++..-..+++..+.+++.++..+... ++..-
T Consensus 583 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------i~~~~ 643 (695)
T 2j69_A 583 FLQADQ--ARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDD-----------------IVSRK 643 (695)
T ss_dssp SSCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred hHhHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Q ss_pred HHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011828 159 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 210 (476)
Q Consensus 159 KdLks~~es~~Qkea~LEeqIkqLe~EIs~~~qEla~LepeiekL~~EeasL 210 (476)
..|..-.......+...+.++++|+.--.....++..++..|..+......|
T Consensus 644 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (695)
T 2j69_A 644 SELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNLLAYYSHH 695 (695)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhccCC
Done!