Query 011829
Match_columns 476
No_of_seqs 141 out of 1586
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361 Chaperonin complex com 100.0 2E-103 4E-108 741.0 36.5 471 4-474 1-471 (543)
2 cd03340 TCP1_eta TCP-1 (CTT or 100.0 5.8E-99 1E-103 794.2 53.5 465 10-474 3-467 (522)
3 TIGR02339 thermosome_arch ther 100.0 1E-97 2E-102 784.2 52.8 456 11-473 4-467 (519)
4 TIGR02345 chap_CCT_eta T-compl 100.0 1.3E-97 3E-102 782.6 52.5 465 8-474 3-468 (522)
5 TIGR02344 chap_CCT_gamma T-com 100.0 2.4E-97 5E-102 782.4 52.6 457 11-474 4-469 (525)
6 TIGR02347 chap_CCT_zeta T-comp 100.0 8E-97 2E-101 775.0 54.8 456 11-473 4-473 (531)
7 PTZ00212 T-complex protein 1 s 100.0 1.5E-96 3E-101 775.7 55.2 466 4-474 3-474 (533)
8 cd03339 TCP1_epsilon TCP-1 (CT 100.0 6.1E-97 1E-101 778.8 52.1 461 8-473 6-474 (526)
9 cd03343 cpn60 cpn60 chaperonin 100.0 8.8E-97 2E-101 778.0 52.6 456 11-473 3-464 (517)
10 TIGR02343 chap_CCT_epsi T-comp 100.0 1.1E-96 2E-101 775.8 52.9 461 8-473 10-478 (532)
11 cd03336 TCP1_beta TCP-1 (CTT o 100.0 3.4E-96 7E-101 771.0 55.1 458 12-474 2-462 (517)
12 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-95 2E-100 769.7 52.8 451 17-474 2-466 (527)
13 TIGR02341 chap_CCT_beta T-comp 100.0 2.5E-94 5.4E-99 755.7 54.4 459 11-474 2-463 (519)
14 TIGR02342 chap_CCT_delta T-com 100.0 1.8E-94 3.9E-99 757.9 53.0 451 18-474 4-465 (517)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.1E-94 4.5E-99 759.1 52.9 451 17-473 2-463 (515)
16 TIGR02340 chap_CCT_alpha T-com 100.0 4.8E-94 1E-98 757.8 53.9 453 15-474 4-470 (536)
17 TIGR02346 chap_CCT_theta T-com 100.0 3.5E-93 7.6E-98 749.0 53.9 455 10-473 4-465 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.6E-92 3.4E-97 736.9 49.3 425 13-473 2-430 (484)
19 KOG0358 Chaperonin complex com 100.0 1.1E-93 2.3E-98 673.7 33.5 452 16-474 19-482 (534)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3E-91 6.5E-96 727.3 46.3 416 11-474 4-428 (480)
21 KOG0363 Chaperonin complex com 100.0 2.5E-91 5.3E-96 654.8 35.5 464 7-475 2-468 (527)
22 COG0459 GroL Chaperonin GroEL 100.0 1.8E-88 3.8E-93 701.7 44.9 450 14-472 2-461 (524)
23 cd00309 chaperonin_type_I_II c 100.0 1.1E-87 2.4E-92 700.9 48.7 408 18-473 3-413 (464)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 3.7E-87 8.1E-92 695.1 48.1 408 19-473 4-417 (472)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 5E-84 1.1E-88 679.9 48.1 431 35-474 1-433 (485)
26 KOG0360 Chaperonin complex com 100.0 1E-84 2.2E-89 628.9 28.8 451 15-473 11-475 (545)
27 PRK12849 groEL chaperonin GroE 100.0 8.3E-82 1.8E-86 660.7 48.4 410 17-472 4-473 (542)
28 PRK00013 groEL chaperonin GroE 100.0 1.1E-81 2.3E-86 659.8 47.2 411 16-471 3-472 (542)
29 KOG0364 Chaperonin complex com 100.0 3.8E-84 8.2E-89 619.3 24.8 463 5-474 1-469 (527)
30 cd03344 GroEL GroEL_like type 100.0 2.5E-81 5.5E-86 655.5 48.2 410 17-472 2-471 (520)
31 PTZ00114 Heat shock protein 60 100.0 2.1E-80 4.6E-85 653.2 48.6 408 17-469 16-486 (555)
32 PRK12851 groEL chaperonin GroE 100.0 1.7E-80 3.6E-85 651.4 47.6 412 16-472 4-474 (541)
33 PRK12850 groEL chaperonin GroE 100.0 5.1E-80 1.1E-84 648.1 48.5 412 16-472 4-474 (544)
34 TIGR02348 GroEL chaperonin Gro 100.0 4.7E-80 1E-84 647.2 47.0 408 17-470 3-470 (524)
35 KOG0362 Chaperonin complex com 100.0 1.4E-79 3E-84 597.2 41.1 461 1-472 1-467 (537)
36 PRK12852 groEL chaperonin GroE 100.0 3.8E-79 8.3E-84 643.1 47.2 411 16-472 4-474 (545)
37 CHL00093 groEL chaperonin GroE 100.0 2.6E-78 5.6E-83 634.7 44.5 410 17-470 4-473 (529)
38 KOG0359 Chaperonin complex com 100.0 4.5E-80 9.7E-85 590.5 23.9 453 12-474 6-465 (520)
39 PRK14104 chaperonin GroEL; Pro 100.0 2E-77 4.4E-82 628.0 46.3 410 16-471 4-473 (546)
40 PLN03167 Chaperonin-60 beta su 100.0 1.6E-76 3.5E-81 624.3 42.9 413 16-471 57-529 (600)
41 KOG0357 Chaperonin complex com 100.0 3.2E-64 6.9E-69 468.1 18.4 331 5-473 8-342 (400)
42 KOG0356 Mitochondrial chaperon 100.0 7.7E-51 1.7E-55 402.5 27.9 408 15-469 16-486 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 4.7E-41 1E-45 322.3 25.5 228 172-409 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 6.9E-38 1.5E-42 292.7 22.8 205 156-405 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 4.1E-24 8.9E-29 232.3 16.1 232 173-414 332-575 (1598)
46 cd00851 MTH1175 This uncharact 46.9 33 0.00071 27.3 4.2 39 279-318 54-92 (103)
47 COG1433 Uncharacterized conser 42.5 75 0.0016 26.7 5.7 40 279-319 56-95 (121)
48 PF02579 Nitro_FeMo-Co: Dinitr 40.8 51 0.0011 25.6 4.4 42 280-323 45-86 (94)
49 PRK13600 putative ribosomal pr 39.3 1E+02 0.0023 24.0 5.7 49 278-326 19-71 (84)
50 cd00562 NifX_NifB This CD repr 35.7 71 0.0015 25.2 4.6 38 280-318 53-90 (102)
51 cd01143 YvrC Periplasmic bindi 34.0 91 0.002 27.7 5.5 52 281-332 53-111 (195)
52 cd01144 BtuF Cobalamin binding 32.5 98 0.0021 28.9 5.7 52 281-332 50-108 (245)
53 PRK09534 btuF corrinoid ABC tr 29.3 98 0.0021 31.2 5.3 53 280-332 111-170 (359)
54 PF07278 DUF1441: Protein of u 28.8 3.5E+02 0.0077 23.7 7.8 69 379-463 60-128 (152)
55 PRK13601 putative L7Ae-like ri 28.3 2E+02 0.0043 22.3 5.6 50 280-332 16-69 (82)
56 cd04743 NPD_PKS 2-Nitropropane 27.7 1.4E+02 0.003 29.7 5.8 56 278-334 72-127 (320)
57 PRK13602 putative ribosomal pr 26.8 2.1E+02 0.0045 22.1 5.5 52 279-333 18-73 (82)
58 PRK07283 hypothetical protein; 26.7 2E+02 0.0044 22.9 5.7 49 280-331 26-78 (98)
59 TIGR03659 IsdE heme ABC transp 26.3 1E+02 0.0023 29.7 4.8 52 281-332 84-141 (289)
60 KOG1481 Cysteine synthase [Ami 26.1 36 0.00078 32.9 1.4 58 356-415 47-104 (391)
61 PF12846 AAA_10: AAA-like doma 26.1 1.5E+02 0.0033 28.2 6.0 57 276-332 241-302 (304)
62 PRK06683 hypothetical protein; 25.7 2.1E+02 0.0046 22.1 5.4 51 280-333 19-73 (82)
63 PRK07714 hypothetical protein; 25.7 2.3E+02 0.005 22.7 5.9 51 279-332 25-79 (100)
64 TIGR03151 enACPred_II putative 25.2 1.9E+02 0.004 28.6 6.3 57 278-334 77-133 (307)
65 KOG2663 Acetolactate synthase, 24.1 80 0.0017 29.9 3.2 29 373-402 121-149 (309)
66 COG3962 Acetolactate synthase 23.8 79 0.0017 32.9 3.3 39 390-429 217-255 (617)
67 TIGR00129 fdhD_narQ formate de 22.1 80 0.0017 29.9 2.9 43 279-321 183-225 (237)
68 PRK01018 50S ribosomal protein 20.9 3.1E+02 0.0067 21.9 5.7 51 279-332 23-78 (99)
69 smart00574 POX domain associat 20.3 2.8E+02 0.0061 23.9 5.4 45 384-428 85-129 (140)
70 PRK00724 formate dehydrogenase 20.1 90 0.002 30.0 2.9 42 279-320 212-253 (263)
No 1
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-103 Score=741.05 Aligned_cols=471 Identities=76% Similarity=1.142 Sum_probs=460.9
Q ss_pred CCchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHH
Q 011829 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (476)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~ 83 (476)
||++|+-.++++++.+.|.-.+.+|+.||..+++.++|||||+|+||+|+++.|+++|||||+|||+-|++-||+++.|+
T Consensus 1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV 80 (543)
T KOG0361|consen 1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV 80 (543)
T ss_pred CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 011829 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (476)
Q Consensus 84 ~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~ 163 (476)
+++++||.++||||||+|+|++++|+++-.+++.|+||..|+++|+.|...|++.++++++.++..+..+.++.|.+.|.
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~ 160 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA 160 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987766677899999999
Q ss_pred HHhccCcCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEE
Q 011829 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (476)
Q Consensus 164 tsl~sK~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~ 243 (476)
|+|+||.+.+..++|+++++||+..+....+.+.|.|+|++||++.||.+++|+-|.+.|.+.+|+.+|+++.||||+++
T Consensus 161 T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~L 240 (543)
T KOG0361|consen 161 TALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 240 (543)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEE
Confidence 99999999999999999999999998744378999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHH
Q 011829 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (476)
Q Consensus 244 ~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le 323 (476)
|..||.+.++.|+++.++++++++.+.+.||+.+.++++++.+.|+++|++.-.|.|.+.+||++++|+|-+|++.+||.
T Consensus 241 nvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~ 320 (543)
T KOG0361|consen 241 NVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN 320 (543)
T ss_pred eeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011829 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (476)
Q Consensus 324 ~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~ 403 (476)
|+..++|++|.++.+++.+..+|+|..|++.++|.+||-+|+||++.+.||++|||+.++.++|.+|++|||++++|.++
T Consensus 321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrral 400 (543)
T KOG0361|consen 321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRAL 400 (543)
T ss_pred HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 404 ~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++..||+|||++||.+|++|++++.++.+++|+.+.+|++|||.||++||.|+|+|..++++|||..|+.+
T Consensus 401 kn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G 471 (543)
T KOG0361|consen 401 KNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQG 471 (543)
T ss_pred ccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 2
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.8e-99 Score=794.19 Aligned_cols=465 Identities=76% Similarity=1.149 Sum_probs=447.6
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhc
Q 011829 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~ 89 (476)
.+++++.+...|.+++.+|+.||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 3 ILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 35788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccC
Q 011829 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (476)
Q Consensus 90 ~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK 169 (476)
++++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++..+++.+++.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK 162 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999998876433334678999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccc
Q 011829 170 LIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (476)
Q Consensus 170 ~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~ 249 (476)
+.+++.++|++++++|+..++++.|.++|+++++.|+++.||++++|++|+++|.+|+|..+|+.++||+|++++++||+
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~ 242 (522)
T cd03340 163 LIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELEL 242 (522)
T ss_pred cchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCC
Confidence 99999999999999999999764478899999999999999999999999999999998888999999999999999999
Q ss_pred cccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHh
Q 011829 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (476)
Q Consensus 250 ~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~t 329 (476)
.+++.+.++.++++++++++.+.|+++++++++++.+.|+++|+++++|+|.+++||.++||++++++++++|+|||++|
T Consensus 243 ~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~t 322 (522)
T cd03340 243 KAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQAT 322 (522)
T ss_pred CccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q 011829 330 GGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVV 409 (476)
Q Consensus 330 Ga~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 409 (476)
||++++++++++++.+|+|+.|++.++|+++|++|++|++++.+||+|||+++..++|.+|+++||++++++++++|++|
T Consensus 323 Ga~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vv 402 (522)
T cd03340 323 GGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVV 402 (522)
T ss_pred CCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 410 AGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 410 ~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
||||++|++++.+|++++.+.++++|+++++||+||+.||++|++|||+||.+++.+|++.|.+.
T Consensus 403 pGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~ 467 (522)
T cd03340 403 AGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQG 467 (522)
T ss_pred ECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 99999999999999999888999999999999999999999999999999999999999999764
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1e-97 Score=784.15 Aligned_cols=456 Identities=42% Similarity=0.693 Sum_probs=440.0
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcc
Q 011829 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (476)
+++++.+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++||
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd 83 (519)
T TIGR02339 4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 83 (519)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 46888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCc
Q 011829 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (476)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~ 170 (476)
+++||||||+|+|+++|++++.+|+++|+||..|++||+.|++.+++.|++++++++..+ ++.|.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~----~~~L~~ia~tsl~sk~ 159 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPED----RDLLKKVAETSLTGKA 159 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCccc----HHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987654 6789999999999999
Q ss_pred C-CcchHHHHHHHHHHHhhcCC---C---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEE
Q 011829 171 I-GGEKEFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (476)
Q Consensus 171 ~-~~~~~~l~~lv~~ai~~~~~---~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill 242 (476)
. +.+.+.|++++++|+.++++ + . |.++|+|++++|++++||++++|++|++++.+++ |+++++||||++
T Consensus 160 ~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~---m~~~i~n~kIll 236 (519)
T TIGR02339 160 SAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPG---MPKRVKNAKIAL 236 (519)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCC---CccccCCCcEEE
Confidence 9 78999999999999999974 1 1 6788999999999999999999999999999875 589999999999
Q ss_pred EeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHH
Q 011829 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (476)
Q Consensus 243 ~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~l 322 (476)
++++||+++++.++++.+++++++.++++.|+++++++++++.+.|++||+++++|++.++++|.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L 316 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDI 316 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 011829 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (476)
Q Consensus 323 e~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (476)
+|||++|||++++++++++++.+|+|+.|++.++|+++|++|++|.++..+||+|||+|+.+++|++|+++||+++++++
T Consensus 317 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 317 EKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred HHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
+++|++|||||++|+++|.+|++++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|..
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~ 467 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEK 467 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999988899999999999999999999999999999999999999999874
No 4
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-97 Score=782.59 Aligned_cols=465 Identities=68% Similarity=1.066 Sum_probs=445.7
Q ss_pred hhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHH
Q 011829 8 QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87 (476)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~ 87 (476)
|..+++++.+...|.+++.+|+.||..++++|+|||||+||+|||++..| ++|||||+||+++|+++||+++|++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~ 81 (522)
T TIGR02345 3 TIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAK 81 (522)
T ss_pred ccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHH
Confidence 44567888899999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhc
Q 011829 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLS 167 (476)
Q Consensus 88 ~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~ 167 (476)
+|++++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.+++.|+++++|++..+ .++++.|.++|+|+++
T Consensus 82 ~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l~~va~tsl~ 160 (522)
T TIGR02345 82 SQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVK-GEQREVLEKCAATALN 160 (522)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcc-cccHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999987421 1235789999999999
Q ss_pred cCcCCcchHHHHHHHHHHHhhcCCCC-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeee
Q 011829 168 SKLIGGEKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 168 sK~~~~~~~~l~~lv~~ai~~~~~~~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~ 246 (476)
||++++++++|++++++|+..++++. |.++|++++++|++++||++++|++|++++.+|+|..+|++++||+|++++++
T Consensus 161 sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~ 240 (522)
T TIGR02345 161 SKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVE 240 (522)
T ss_pred cccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecC
Confidence 99999999999999999999997643 78899999999999999999999999999999999889999999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHH
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVA 326 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia 326 (476)
|++.+.+.+..+.++++++++++.+.|+++++++++++++.|+++|+++++|++.+++||.+.||+++++++.+++++|+
T Consensus 241 Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria 320 (522)
T TIGR02345 241 LELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVV 320 (522)
T ss_pred cccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011829 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (476)
Q Consensus 327 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 406 (476)
++|||++++++++++++.+|+|+.|++.++++++|++|+||++++++||+|||+|+.+++|.+|+++||+++++++++++
T Consensus 321 ~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 321 KACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred HHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 407 ~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++|||||++|++++.+|++++.+.++++|+++++|++||++||++|++|||+|+.+++.+|++.|..+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~ 468 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKG 468 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999888999999999999999999999999999999999999999999753
No 5
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-97 Score=782.44 Aligned_cols=457 Identities=31% Similarity=0.580 Sum_probs=438.3
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcc
Q 011829 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (476)
+++++.+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~ 83 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCc
Q 011829 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (476)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~ 170 (476)
+++||||||+|+|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++++..+ .+.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sk~ 159 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND----DAAMLKLIQSCIGTKF 159 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987655 5789999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcCCCC-------Cc-cceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEE
Q 011829 171 IGGEKEFFASMVVDAVGAIGDGD-------RL-NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (476)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~~~~~~-------~~-~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill 242 (476)
.++|.+.|++++++|+..++++. |. .+|+|++++|++++||++++|++|++++.++. |+++++||+|++
T Consensus 160 ~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~---m~~~~~n~kIll 236 (525)
T TIGR02344 160 VSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPK---MRRYIENPRIVL 236 (525)
T ss_pred chhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCC---CccccCCCCEEE
Confidence 99999999999999999997531 22 25899999999999999999999999988764 589999999999
Q ss_pred EeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHH
Q 011829 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (476)
Q Consensus 243 ~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~l 322 (476)
++++|++.+++.+.++.++++++++++++.|+++++++++++.+.+++||+++++|++.++++|.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~L 316 (525)
T TIGR02344 237 LDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDN 316 (525)
T ss_pred EecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCcccCcc-cccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 011829 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (476)
Q Consensus 323 e~Ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 401 (476)
+|||++|||++++++++++++++|+ |+.|++.++++++|++|+||++++.+||+|||+|+.+++|++|+++||++++++
T Consensus 317 erIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 317 NRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred HHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999899999999999999999999999999999999
Q ss_pred HHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 402 ~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
+++++++|||||++|++||.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++++|++.|..+
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~ 469 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQE 469 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999888999999999999999999999999999999999999999999754
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8e-97 Score=774.99 Aligned_cols=456 Identities=28% Similarity=0.482 Sum_probs=436.9
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcc
Q 011829 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (476)
+++++.+...|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd 83 (531)
T TIGR02347 4 LLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQD 83 (531)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhh
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhccccc-CCChHHHHHHHHHHHHHHhccC
Q 011829 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE-GQSLEEKKRLLSKCAATTLSSK 169 (476)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~-~~~~~~~~~~l~~va~tsl~sK 169 (476)
+++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.+++.|+++++++. ..+ ++.|.++++|+++||
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK 159 (531)
T TIGR02347 84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVD----RELLLNVARTSLRTK 159 (531)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999997763 333 688999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCC---CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeee
Q 011829 170 LIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 170 ~~~~~~~~l~~lv~~ai~~~~~~~---~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~ 246 (476)
+.++++++|++++++|+..++++. |.++|+++++.|++..||++++|++|++++.+|+| |++++||+|++++++
T Consensus 160 ~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~---~~~~~n~~Ill~~~~ 236 (531)
T TIGR02347 160 LPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM---PRRVKNAYILTCNVS 236 (531)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCC---ceeccCceEEEEeCC
Confidence 999999999999999999997642 56779999999999999999999999999999875 889999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Ce---EEEecccccHHHHHHHHhcCcccccC
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSG-------AK---VVLSRLAIGDLATQYFADRDIFCAGR 316 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~-------~~---lvi~~~~i~~~~~~~l~~~~I~~i~~ 316 (476)
|++.+++.+..+.+++.+++..+.+.|++++++++++|++.+ ++ ||+|+++|+|.+++||.++||+++++
T Consensus 237 le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~r 316 (531)
T TIGR02347 237 LEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRR 316 (531)
T ss_pred CCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEcc
Confidence 999999999999999999999999999999999999999866 25 99999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 011829 317 VAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAI 396 (476)
Q Consensus 317 v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal 396 (476)
+++++|+|||++|||++++++++++++++|+|+.|++..+++++|++|++|++++.+||+|||+|+.+++|++|+++||+
T Consensus 317 v~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 317 AKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred CCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 397 MIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 397 ~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
+++++++++|++|||||++|+++|.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~ 473 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDE 473 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999974
No 7
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.5e-96 Score=775.70 Aligned_cols=466 Identities=38% Similarity=0.599 Sum_probs=442.5
Q ss_pred CCchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCC-----CCCeEEecCHHHHhhhhcccChh
Q 011829 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD-----KGTVTISNDGATIMKLLDIVHPA 78 (476)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~-----~g~~~iTnDG~tIl~~l~~~hP~ 78 (476)
|...|..+++++.+..+|.+++..|+.||..++++++|||||+||+|||++. .|+++|||||+||+++|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ 82 (533)
T PTZ00212 3 MANVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA 82 (533)
T ss_pred ccccchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH
Confidence 3345566789998999999999999999999999999999999999999998 59999999999999999999999
Q ss_pred hHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHH
Q 011829 79 AKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLL 158 (476)
Q Consensus 79 ~~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l 158 (476)
++|+++++++||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++..+ .++++.|
T Consensus 83 akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l 161 (533)
T PTZ00212 83 AKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDE-EKFKEDL 161 (533)
T ss_pred HHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccc-hhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886532 2236789
Q ss_pred HHHHHHHhccCcCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCc
Q 011829 159 SKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNP 238 (476)
Q Consensus 159 ~~va~tsl~sK~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~ 238 (476)
.++|+|+++||+.+.+.+.|++++++|+..+....+.+.|++++++|++++||++++|+++++++.+ .|+++++||
T Consensus 162 ~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~----~~~~~i~n~ 237 (533)
T PTZ00212 162 LNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV----GQPKRLENC 237 (533)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCC----CCCccccCC
Confidence 9999999999999999999999999999998654478899999999999999999999999999765 258999999
Q ss_pred eEEEEeeecccccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCC
Q 011829 239 KILLLNIELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317 (476)
Q Consensus 239 ~Ill~~~~Le~~~~~~-~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v 317 (476)
+|++++++||+++++. ++++.+++++++..+.+.|+++++++++.|++.++++++++++|+|.++++|.++||++++++
T Consensus 238 kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v 317 (533)
T PTZ00212 238 KILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHA 317 (533)
T ss_pred cEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecC
Confidence 9999999999999987 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHH
Q 011829 318 AEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIM 397 (476)
Q Consensus 318 ~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~ 397 (476)
++++++|||++|||+++++++++++.++|+|+.|++..+++++|++|++|+.++.|||+|||+|+.+++|.+|+++|||+
T Consensus 318 ~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~ 397 (533)
T PTZ00212 318 DFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALC 397 (533)
T ss_pred CHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 398 IVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 398 ~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++++++++|++|||||++|+++|.+|++++++.++++|+++++|++||++||++|++|||+|+.+++.+|++.|...
T Consensus 398 vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~ 474 (533)
T PTZ00212 398 VLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKG 474 (533)
T ss_pred HHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999653
No 8
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.1e-97 Score=778.83 Aligned_cols=461 Identities=31% Similarity=0.558 Sum_probs=438.8
Q ss_pred hhhhcccc--ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHH
Q 011829 8 QIILLKEG--TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (476)
Q Consensus 8 ~~~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~ 85 (476)
|..+++++ .+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~ 85 (526)
T cd03339 6 PFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVEL 85 (526)
T ss_pred CeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHH
Confidence 44467776 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHH
Q 011829 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (476)
Q Consensus 86 ~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~ts 165 (476)
+++|++++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.+++.|++++++++... .+.+.|.++++|+
T Consensus 86 a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~ts 163 (526)
T cd03339 86 SKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP--DNKEPLIQTAMTS 163 (526)
T ss_pred HHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCc--ccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999886421 2367899999999
Q ss_pred hccCcCCcchHHHHHHHHHHHhhcCCC---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEE
Q 011829 166 LSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (476)
Q Consensus 166 l~sK~~~~~~~~l~~lv~~ai~~~~~~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Il 241 (476)
+++|+.+.+.+.|++++++|+..+.+. . |.+.|+|++++|++++||++++|++|++++.+++| ++.++||||+
T Consensus 164 l~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m---~~~~~n~kI~ 240 (526)
T cd03339 164 LGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM---PKEVKDAKIA 240 (526)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCC---CceecCCCEE
Confidence 999998888999999999999988642 1 57899999999999999999999999999999875 7899999999
Q ss_pred EEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHH
Q 011829 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (476)
Q Consensus 242 l~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~ 321 (476)
+++++||+++++.+.++.++++++++++.+.|+++++++++++.+.|++||+++++|++.++++|.++||++++++++++
T Consensus 241 ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~ 320 (526)
T cd03339 241 ILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVE 320 (526)
T ss_pred EEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeecccccCCCcccCcccccEEEEEECC--eEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 011829 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (476)
Q Consensus 322 le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~--~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 399 (476)
|+|||++|||+++++++++++..+|+|+.|++..+|. ++|++|++|++++.+||+|||+|+.+++|++|+++|||+++
T Consensus 321 LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~ 400 (526)
T cd03339 321 IELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVV 400 (526)
T ss_pred HHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999985 68999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 400 RRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 400 ~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
++++++|++|||||++|+++|.+|++++...++++|+++++||+||++||++|++|||+|+.+++++|+..|..
T Consensus 401 ~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~ 474 (526)
T cd03339 401 RNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVK 474 (526)
T ss_pred HHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999953
No 9
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.8e-97 Score=778.00 Aligned_cols=456 Identities=41% Similarity=0.683 Sum_probs=440.3
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcc
Q 011829 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (476)
+++++.+..+|.+++..|+.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCc
Q 011829 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (476)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~ 170 (476)
+++||||||+|+|+++|++++.+++++|+||..|++||++|.+.+++.|++++++++..+ ++.+.++|+|+++||+
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~----~~~l~~va~ts~~sk~ 158 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDD----KDTLRKIAKTSLTGKG 158 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987544 6889999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcCCC-----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEe
Q 011829 171 IGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (476)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~~~~~-----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~ 244 (476)
.+.+.+.|++++++|+.+++++ . |.++|+|++++|++++||++++|++|++++.+++| ++.++||||++++
T Consensus 159 ~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m---~~~~~n~~Illl~ 235 (517)
T cd03343 159 AEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM---PKRVENAKIALLD 235 (517)
T ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCC---ccccCCCcEEEEe
Confidence 9999999999999999998652 1 56789999999999999999999999999999875 7899999999999
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHH
Q 011829 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (476)
Q Consensus 245 ~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~ 324 (476)
++||+++++.++++.+++.+++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~ 315 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEK 315 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 011829 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (476)
Q Consensus 325 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 404 (476)
||++|||++++++++++++.+|+|+.|++.++|+++|++|++|++++.+||+|||+|+.+++|++|+++||+++++++++
T Consensus 316 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 316 LARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred HHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 405 NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 405 ~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
+|++|||||++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 464 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEK 464 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999988899999999999999999999999999999999999999999864
No 10
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-96 Score=775.77 Aligned_cols=461 Identities=33% Similarity=0.571 Sum_probs=439.2
Q ss_pred hhhhccc--cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHH
Q 011829 8 QIILLKE--GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (476)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~ 85 (476)
|..++++ +.+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~ 89 (532)
T TIGR02343 10 PFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVEL 89 (532)
T ss_pred CchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHH
Confidence 4456777 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHH
Q 011829 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (476)
Q Consensus 86 ~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~ts 165 (476)
+++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++... .+++.|.++++|+
T Consensus 90 a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~t~ 167 (532)
T TIGR02343 90 SKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDN--NNKEPLIQAAKTS 167 (532)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCC--CCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999875321 1367899999999
Q ss_pred hccCcCCcchHHHHHHHHHHHhhcCCC---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEE
Q 011829 166 LSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (476)
Q Consensus 166 l~sK~~~~~~~~l~~lv~~ai~~~~~~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Il 241 (476)
+++|+.+.+.+.|++++++|+..+... . |.++|++++++|++++||++++|++|++++.+++| |+.++||||+
T Consensus 168 l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m---~~~~~n~kI~ 244 (532)
T TIGR02343 168 LGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM---PKEVKDAKIA 244 (532)
T ss_pred hccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCC---CeeecCCcEE
Confidence 999998888999999999999988542 2 78999999999999999999999999999999875 8999999999
Q ss_pred EEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHH
Q 011829 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (476)
Q Consensus 242 l~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~ 321 (476)
+++++||+++++.+.++.+++++++.++.+.|+++++++++++.+.|++||+++++|||.++++|.++||++++++++++
T Consensus 245 l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~ 324 (532)
T TIGR02343 245 ILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHE 324 (532)
T ss_pred EEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeecccccCCCcccCcccccEEEEEECC--eEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 011829 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (476)
Q Consensus 322 le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~--~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 399 (476)
|+|||++|||++++++++++++++|+|+.|++..+|+ ++|++|++|++++.+||+|||+|+.+++|++|+++||++++
T Consensus 325 l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v 404 (532)
T TIGR02343 325 LELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVV 404 (532)
T ss_pred HHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 48999999998899999999999999999999999999999
Q ss_pred HHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 400 RRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 400 ~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
+++++++++|||||++|+++|++|++++...++++|+++++|++||+.||++|++|||+|+.+++++|++.|..
T Consensus 405 ~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~ 478 (532)
T TIGR02343 405 RNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMK 478 (532)
T ss_pred HHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999863
No 11
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.4e-96 Score=770.99 Aligned_cols=458 Identities=37% Similarity=0.594 Sum_probs=436.1
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCC--CCCeEEecCHHHHhhhhcccChhhHHHHHHHHhc
Q 011829 12 LKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~--~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~ 89 (476)
++++.+...|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 46677888999999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccC
Q 011829 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (476)
Q Consensus 90 ~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK 169 (476)
|+++||||||+|+|+++||+++.+|+++|+||..|++||+.|.+.+++.|++++++++..+ +++++.|+++++|+++||
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~l~~ia~t~lssk 160 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDE-EAFREDLLNIARTTLSSK 160 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccccc-chhHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999885321 123678999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccc
Q 011829 170 LIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (476)
Q Consensus 170 ~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~ 249 (476)
+.++++++|++++++|+..++...+.++|++++++|++++||++++|+++++++.++ +|++++||+|++++++|++
T Consensus 161 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~----~~~~~~n~kIli~~~~le~ 236 (517)
T cd03336 161 ILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN----QPKRIENAKILIANTPMDT 236 (517)
T ss_pred ccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCC----CCCeeccccEEEEecCCCc
Confidence 999999999999999999996544778999999999999999999999999987642 5899999999999999999
Q ss_pred ccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHH
Q 011829 250 KSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (476)
Q Consensus 250 ~~~~~-~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~ 328 (476)
++++. ++++.+++++++..+.+.|+++++++++.|++.++++++++++|+|.+++||.++||++++++++++|+|||++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~ 316 (517)
T cd03336 237 DKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALV 316 (517)
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99987 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 011829 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (476)
Q Consensus 329 tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~v 408 (476)
|||+++++++++++.++|+|+.|++..+|+++|++|++|++++.+||+|||+|+.+++|.+|+++||++++++++++|++
T Consensus 317 tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~v 396 (517)
T cd03336 317 TGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRV 396 (517)
T ss_pred hCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 409 VAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 409 v~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
|||||++|+++|..|++++.+.++++|+++++|++||+.||++|++|||+|+.+++++|+..|...
T Consensus 397 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~ 462 (517)
T cd03336 397 VLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNG 462 (517)
T ss_pred EeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988999999999999999999999999999999999999999999653
No 12
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-95 Score=769.69 Aligned_cols=451 Identities=39% Similarity=0.645 Sum_probs=430.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccCCc
Q 011829 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (476)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 96 (476)
+...|.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHh-hcccccCCChHHHHHHHHHHHHHHhccCcCCcch
Q 011829 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (476)
Q Consensus 97 ttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~-~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~~ 175 (476)
|||+|+|+++||+++.+|+++|+||..|++||+.|++.+++.|++ ++++++..+ ++.|.++++|+++||+++++.
T Consensus 82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~ 157 (527)
T cd03335 82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLG----KESLINVAKTSMSSKIIGADS 157 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccC----HHHHHHHHHHHhcccccchhH
Confidence 999999999999999999999999999999999999999999996 899887544 678999999999999998888
Q ss_pred HHHHHHHHHHHhhcCC--C----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecc
Q 011829 176 EFFASMVVDAVGAIGD--G----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (476)
Q Consensus 176 ~~l~~lv~~ai~~~~~--~----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le 248 (476)
+.|++++++|+..++. . . |.++|+++++.|+++.+|++++|++|++++.++. ||++++||+|++++++|+
T Consensus 158 ~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~---m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 158 DFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQG---MPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCC---CcccccCCcEEEEeccCC
Confidence 9999999999999852 1 1 6788999999999999999999999999999875 589999999999999999
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHH
Q 011829 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (476)
Q Consensus 249 ~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~ 328 (476)
+.+++.+.++.+++.++++.+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~ 314 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKA 314 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccccCC------CcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 011829 329 TGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (476)
Q Consensus 329 tGa~ii~~l~~l------~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (476)
|||+++++++++ +++++|+|+.|+++++++++|++|+||++++.+||+|||+|+.+++|++|+++||+++++++
T Consensus 315 tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~ 394 (527)
T cd03335 315 TGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRT 394 (527)
T ss_pred hCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998655 34479999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
+++|++|||||++|++++.+|+++++..++++|+++++||+||+.||++|++|||+|+.+++.+|++.|..+
T Consensus 395 ~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~ 466 (527)
T cd03335 395 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAA 466 (527)
T ss_pred hhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988999999999999999999999999999999999999999999754
No 13
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.5e-94 Score=755.72 Aligned_cols=459 Identities=34% Similarity=0.574 Sum_probs=435.0
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCC--CCeEEecCHHHHhhhhcccChhhHHHHHHHHh
Q 011829 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDK--GTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~--g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~ 88 (476)
+++++.+..++.+++..|+.||..++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|+++++++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 3567778899999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhcc
Q 011829 89 QDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSS 168 (476)
Q Consensus 89 ~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~s 168 (476)
||+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|++++++++... .++++.|.++++|++++
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~L~~ia~t~l~s 160 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDK-TKFRDDLLNIARTTLSS 160 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcc-cccHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999886421 11357899999999999
Q ss_pred CcCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecc
Q 011829 169 KLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (476)
Q Consensus 169 K~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le 248 (476)
|+.+.+.+.|++++++|+..+....+.+.|++.+++|++++||++++|+++++.+.+ .+|++++||+|++++++|+
T Consensus 161 ki~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~----~~~~~~~n~~Ili~~~~Le 236 (519)
T TIGR02341 161 KILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV----NQPKRIENAKILIANTPMD 236 (519)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCC----CCceeeccccEEEEecCCC
Confidence 999999999999999999998543366779999999999999999999999999764 2488999999999999999
Q ss_pred cccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHH
Q 011829 249 LKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (476)
Q Consensus 249 ~~~~~~-~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~ 327 (476)
+.+++. ++++.+++++++..+.+.|+++++++++.|++.|+++++++++|++.++++|.++||++++++++.+|+|||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~ 316 (519)
T TIGR02341 237 TDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLAL 316 (519)
T ss_pred CCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999887 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 011829 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNST 407 (476)
Q Consensus 328 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~ 407 (476)
+|||++++++++++++++|+|+.|++..+|+++|++|++|++++.+||+|||+|+.+++|.+|+++||++++++++++++
T Consensus 317 ~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~ 396 (519)
T TIGR02341 317 VTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESR 396 (519)
T ss_pred HhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 408 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 408 vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
+||||||+|++++..|++++++.++++|+++++|++||+.||++|++|||+||.+++.+|++.|+.+
T Consensus 397 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~ 463 (519)
T TIGR02341 397 TVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNG 463 (519)
T ss_pred EEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999888999999999999999999999999999999999999999999653
No 14
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.8e-94 Score=757.93 Aligned_cols=451 Identities=34% Similarity=0.565 Sum_probs=431.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccCCch
Q 011829 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (476)
Q Consensus 18 ~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 97 (476)
...+.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 35677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcchHH
Q 011829 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (476)
Q Consensus 98 tt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ 177 (476)
||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++..+ ++.|.++++|++++|+.+.+.+.
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~~~~ 159 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD----REILIKSATTSLSSKVVSQYSSL 159 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccC----HHHHHHHHHHHhccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999987544 67899999999999999999999
Q ss_pred HHHHHHHHHhhcCCC----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecccccc
Q 011829 178 FASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (476)
Q Consensus 178 l~~lv~~ai~~~~~~----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~ 252 (476)
|++++++|+..++++ . |.++|+++++.|++++||++++|++|++++.++. .||+.++||+|++++++|++.++
T Consensus 160 ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~--~mpk~i~n~kI~ll~~~Le~~~~ 237 (517)
T TIGR02342 160 LAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSA--GGPTRIEKAKIGLIQFQISPPKT 237 (517)
T ss_pred HHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccC--CCCccccCCcEEEEecCCCCCcc
Confidence 999999999999752 2 6889999999999999999999999999998742 36899999999999999999999
Q ss_pred ccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccc-----cHHHHHHHHhcCcccccCCCHHHHHHHHH
Q 011829 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (476)
Q Consensus 253 ~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~~~~~l~~~~I~~i~~v~~~~le~Ia~ 327 (476)
+....+.++++++++++.+.|+++++++++++.+.|++||+++++| ++.++++|.++||.+++++++++|+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~ 317 (517)
T TIGR02342 238 DMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICK 317 (517)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCC-ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011829 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (476)
Q Consensus 328 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 406 (476)
+|||+++++++++++.++|+|+.|++.++++++|+++++|+++ +.+||+|||+|+.+++|.+|+++||+++++++++++
T Consensus 318 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~ 397 (517)
T TIGR02342 318 TIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKR 397 (517)
T ss_pred HHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999874 899999999999999999999999999999999999
Q ss_pred cccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 407 ~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++|||||++|+++|.+|++++.+.++++|+++++||+||+.||++|++|||+||.+++++|+..|+.+
T Consensus 398 ~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~ 465 (517)
T TIGR02342 398 GLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANG 465 (517)
T ss_pred CEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999888999999999999999999999999999999999999999999654
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-94 Score=759.06 Aligned_cols=451 Identities=35% Similarity=0.571 Sum_probs=432.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccCCc
Q 011829 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (476)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 96 (476)
+...+.+++..|+.||..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcchH
Q 011829 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (476)
Q Consensus 97 ttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~~~ 176 (476)
|||+|+|+++|++++.+++++|+||..|++||+.|.+.+++.|++++++++..+ ++.|.++|+|+++||+.+++++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~----~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND----RESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHHhccccchhhHH
Confidence 999999999999999999999999999999999999999999999999987544 5789999999999999999999
Q ss_pred HHHHHHHHHHhhcCCC----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccccc
Q 011829 177 FFASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (476)
Q Consensus 177 ~l~~lv~~ai~~~~~~----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~ 251 (476)
.|++++++|+.+++++ . |.++|++.++.|++++||++++|++|++++.++++ +|+.++||++++++|+|++.+
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~--~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG--GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCC--CCccccCCcEEEEeccccccc
Confidence 9999999999999753 2 67889999999999999999999999999998764 388999999999999999999
Q ss_pred cccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccc-----cHHHHHHHHhcCcccccCCCHHHHHHHH
Q 011829 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVA 326 (476)
Q Consensus 252 ~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~~~~~l~~~~I~~i~~v~~~~le~Ia 326 (476)
.+.+..+.++++++++++.++|+++++++++++++.|++||+++++| ++.++++|.++||.+++++++++|+|||
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa 315 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFIC 315 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHH
Confidence 99988999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred HHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 011829 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (476)
Q Consensus 327 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~ 405 (476)
++|||+++++++++++..+|+|+.|++.++|+++|++|++|++ ++.+||+|||+|+.+++|.+|+++||++++++++++
T Consensus 316 ~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 316 KTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred HHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred CcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 406 ~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
|++|||||++|++||.+|++++.+.++++|+++++|++||+.||++|++|||+||.+++.+|++.|+.
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 463 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQ 463 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999988889999999999999999999999999999999999999999965
No 16
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.8e-94 Score=757.79 Aligned_cols=453 Identities=38% Similarity=0.630 Sum_probs=430.3
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccC
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (476)
+.+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|
T Consensus 4 ~~~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~G 83 (536)
T TIGR02340 4 GGERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVG 83 (536)
T ss_pred CcceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhC
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhh-cccccCCChHHHHHHHHHHHHHHhccCcCCc
Q 011829 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKEL-AKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (476)
Q Consensus 95 DGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~-~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~ 173 (476)
|||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|++. +++++..+ .+.|.++++|+++||+.+.
T Consensus 84 DGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~ 159 (536)
T TIGR02340 84 DGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELG----REALINVAKTSMSSKIIGL 159 (536)
T ss_pred CChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccc----HHHHHHHHHHHhccccchh
Confidence 999999999999999999999999999999999999999999999974 88887543 5789999999999999999
Q ss_pred chHHHHHHHHHHHhhcCC---C---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeee
Q 011829 174 EKEFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 174 ~~~~l~~lv~~ai~~~~~---~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~ 246 (476)
+++.|++++++|+..++. + . +.++|+++++.|+++.||++++|++|++++.++. |+++++||+|++++++
T Consensus 160 ~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~---m~~~~~n~kIli~~~~ 236 (536)
T TIGR02340 160 DSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQ---MPKRIKKAKIACLDFN 236 (536)
T ss_pred hHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCC---CcceecCCcEEEEecC
Confidence 999999999999999852 1 1 6788999999999999999999999999999875 5899999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHH
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVA 326 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia 326 (476)
|++.+++.+.++.++++.+++.+.+.|++++++.+++|.+.+++||+++++|++.+++||.++||++++++++++|+|||
T Consensus 237 L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa 316 (536)
T TIGR02340 237 LQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIA 316 (536)
T ss_pred CCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccccCC------CcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 011829 327 AATGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (476)
Q Consensus 327 ~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 400 (476)
++|||+++++++++ ++.++|+|+.|+++++++++|++|++|++++.+||+|||+|+.+++|++|+++||+++++
T Consensus 317 ~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~ 396 (536)
T TIGR02340 317 KATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVK 396 (536)
T ss_pred HHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999997654 445699999999999999999999999888999999999999999999999999999999
Q ss_pred HHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 401 RATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 401 ~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
+++++|++|||||++|++++.+|++++.+.++++++++++|++||+.||++|++|||+||.+++.+|++.|..+
T Consensus 397 ~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~ 470 (536)
T TIGR02340 397 RTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAA 470 (536)
T ss_pred HHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999998753
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-93 Score=748.98 Aligned_cols=455 Identities=27% Similarity=0.521 Sum_probs=430.4
Q ss_pred hhccccccccccHH-HHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHh
Q 011829 10 ILLKEGTDTSQGKA-QLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (476)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~ 88 (476)
.+++++.+...|.+ ++..|+.||..|+++|+|||||+||+|||++..|+++|||||+||+++|+++||+++|+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~s 83 (531)
T TIGR02346 4 SLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEM 83 (531)
T ss_pred ccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHH
Confidence 45677656667754 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcc-cccCCChHHHHHHHHHHHHHHhc
Q 011829 89 QDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAK-SIEGQSLEEKKRLLSKCAATTLS 167 (476)
Q Consensus 89 ~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~-~v~~~~~~~~~~~l~~va~tsl~ 167 (476)
||+++||||||+|||+++||+++.+++++|+||..|++||+.|++.+++.|+++++ +++..+ +.+.+.++++|+++
T Consensus 84 qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~tsl~ 160 (531)
T TIGR02346 84 QENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVR---NKKELIKALKASIS 160 (531)
T ss_pred HhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCC---CHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999886 664321 26789999999999
Q ss_pred cCcCCcchHHHHHHHHHHHhhcCCC---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEE
Q 011829 168 SKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (476)
Q Consensus 168 sK~~~~~~~~l~~lv~~ai~~~~~~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~ 243 (476)
||+.++ ++.|++++++|+.+++++ . +.+.|+++++.|++.+||++++|++|++++. .+|+.++||||+++
T Consensus 161 sK~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~-----~~~k~i~n~kI~l~ 234 (531)
T TIGR02346 161 SKQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE-----GSVKRVKNAKVAVF 234 (531)
T ss_pred cccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC-----CCceeccCCCEEEE
Confidence 999987 999999999999999753 2 6788999999999999999999999999853 24789999999999
Q ss_pred eeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHH
Q 011829 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (476)
Q Consensus 244 ~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le 323 (476)
++|+++.+++.+.++.++++.++.++.+.|+++++++++++.+.|++||+++++|+|.++++|.++||.++++++..+|+
T Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~ 314 (531)
T TIGR02346 235 SCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELR 314 (531)
T ss_pred ecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHH
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 011829 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (476)
Q Consensus 324 ~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~-~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (476)
|||.+|||++++++++++++++|+|+.|++.++|+++|.+|+++. .+..+||+|||+|+.+++|++|+++||+++++++
T Consensus 315 ~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~a 394 (531)
T TIGR02346 315 RLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKAL 394 (531)
T ss_pred HHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 5789999999999999999999999999999999
Q ss_pred HhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
+++|++||||||+|+++|.+|++++...++++|+++++|++||+.||++|++|||+||.+++.+|++.|+.
T Consensus 395 i~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 465 (531)
T TIGR02346 395 VKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKK 465 (531)
T ss_pred hcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999988889999999999999999999999999999999999999999864
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-92 Score=736.93 Aligned_cols=425 Identities=29% Similarity=0.491 Sum_probs=405.2
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccc
Q 011829 13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~ 92 (476)
+++.+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++++.++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 2 NPKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccC-CChHHHHHHHHHHHHHHhccCcC
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEG-QSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~-~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
+||||||+++|+++|++++.+++++|+||..|++||+.|++.+++.|++++++++. .+ ++.+.++|+|+++||+.
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~----~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTD----RELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999998864 23 67899999999999999
Q ss_pred CcchHHHHHHHHHHHhhcCCCC---CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecc
Q 011829 172 GGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~---~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le 248 (476)
+.+.+.|++++++|+..++++. |.++|++++++|+++.||++++|++|++++.+|+| |++++||+|++++++|+
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m---~~~~~n~~Ill~~~~le 234 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM---PKRVENAYILTCNVSLE 234 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCC---CccccCceEEEEeCCCC
Confidence 9999999999999999997642 78889999999999999999999999999999876 89999999999999999
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHH
Q 011829 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (476)
Q Consensus 249 ~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~ 328 (476)
+.+++.+.++.++ ||+++++|+|.++++|.++||++++++++++|+|||++
T Consensus 235 ~~~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~ 285 (484)
T cd03342 235 YEKTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLA 285 (484)
T ss_pred CCccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHH
Confidence 9888766555432 99999999999999999999999999999999999999
Q ss_pred hCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 011829 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (476)
Q Consensus 329 tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~v 408 (476)
|||++++++++++++++|+|+.|+++.+++++|++|++|++++.+||+|||+|+.+++|.+|+++||++++++++++|++
T Consensus 286 tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~ 365 (484)
T cd03342 286 CGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCV 365 (484)
T ss_pred hCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 409 VAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 409 v~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
||||||+|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 366 vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~ 430 (484)
T cd03342 366 VPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAE 430 (484)
T ss_pred EeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998899999999999999999999999999999999999999998864
No 19
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-93 Score=673.73 Aligned_cols=452 Identities=35% Similarity=0.568 Sum_probs=432.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccCC
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGD 95 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 95 (476)
.+..+-.+.|.+||+|++++++.++|||||+||||||+++.|+++|||||+|||+.|.+-||+++||++++..||.++||
T Consensus 19 ~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGD 98 (534)
T KOG0358|consen 19 KDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGD 98 (534)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccC
Confidence 35577789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcch
Q 011829 96 GTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (476)
Q Consensus 96 Gttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~~ 175 (476)
||||+|+|+++||+.+.+|+++|+||+.|.+.|+.|.++++++|++++.|++.++ ++.|.+-+.|+|+||+.+++.
T Consensus 99 GTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsd----re~Li~~atTsLnSKvvSq~s 174 (534)
T KOG0358|consen 99 GTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSD----RESLIKSATTSLNSKVVSQYS 174 (534)
T ss_pred CceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCc----HHHHHHHHHhHhhHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999887 889999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCC----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecccc
Q 011829 176 EFFASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELK 250 (476)
Q Consensus 176 ~~l~~lv~~ai~~~~~~----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~ 250 (476)
..|+.+.++|+.++-.+ + |.++|++++..||.++|+++++|++|++...... .|+++++++|-++.|.|.++
T Consensus 175 ~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~---gptriekAkIglIQF~iS~P 251 (534)
T KOG0358|consen 175 SLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSA---GPTRIEKAKIGLIQFQISPP 251 (534)
T ss_pred cccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCC---CcchhhhceeeEEEEEecCC
Confidence 99999999999998652 2 7899999999999999999999999998866432 48999999999999999999
Q ss_pred ccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccc-----cHHHHHHHHhcCcccccCCCHHHHHHH
Q 011829 251 SEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRV 325 (476)
Q Consensus 251 ~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~~~~~l~~~~I~~i~~v~~~~le~I 325 (476)
++++..++.++.+.+++.+++.|++|+.+.+++|++.|+|+++.||+| +|.++|||++-+|+|++.+.++|+|.+
T Consensus 252 Ktdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefi 331 (534)
T KOG0358|consen 252 KTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFI 331 (534)
T ss_pred CCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHH
Confidence 999999999999999999999999999999999999999999999887 789999999999999999999999999
Q ss_pred HHHhCCeecccccCCCcccCcccccEEEEEE-CCeEEEEEEcCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011829 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQV-GNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (476)
Q Consensus 326 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~-~~~~~~~~~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~ 403 (476)
|+.+|+.++.+++.++++.+|+++.+++..- |+.+++.+.|+.+ .+.+||++||.++..++|.+|++|||||++|++.
T Consensus 332 ck~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLv 411 (534)
T KOG0358|consen 332 CKTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLV 411 (534)
T ss_pred HhhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhh
Confidence 9999999999999999999999999998744 5559999999876 6899999999999999999999999999999999
Q ss_pred hCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 404 ~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
+...++||||+.|+.+|..|.+++....|.++|++++||+|||.||.+|++|||++|++++++||+.|+.+
T Consensus 412 k~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqg 482 (534)
T KOG0358|consen 412 KKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQG 482 (534)
T ss_pred hccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3e-91 Score=727.25 Aligned_cols=416 Identities=33% Similarity=0.617 Sum_probs=396.4
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcc
Q 011829 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (476)
+++++.+...|.+++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 83 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence 46777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCc
Q 011829 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (476)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~ 170 (476)
+++||||||+|+|+++||+++.+|+++|+||..|++||+.|.+.+++.|++++++++..+ ++.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sK~ 159 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND----RAQMLKIIKSCIGTKF 159 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCC----HHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999999999999999999999999987654 6789999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcCCCC-------Cc-cceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEE
Q 011829 171 IGGEKEFFASMVVDAVGAIGDGD-------RL-NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (476)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~~~~~~-------~~-~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill 242 (476)
.++|.+.|++++++|+..++++. |. .+|+|++++|++++||++++|++|++++.++. |+++++||||++
T Consensus 160 ~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~---m~~~~~n~kIll 236 (480)
T cd03337 160 VSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK---MRRRIENPRIVL 236 (480)
T ss_pred chhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC---CCcEecCCCEEE
Confidence 99999999999999999997531 22 26899999999999999999999999998865 589999999999
Q ss_pred EeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHH
Q 011829 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (476)
Q Consensus 243 ~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~l 322 (476)
++++|++ ||+++++|+|.++++|.++||++++++++++|
T Consensus 237 l~~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L 275 (480)
T cd03337 237 LDCPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDN 275 (480)
T ss_pred EecCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHH
Confidence 9999865 99999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCcccCcc-cccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 011829 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (476)
Q Consensus 323 e~Ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 401 (476)
+|||++|||++++++++++++++|+ |+.++++.+++++|++|++|++++.+||+|||+|+.+++|++|+++||++++++
T Consensus 276 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~ 355 (480)
T cd03337 276 NRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARN 355 (480)
T ss_pred HHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 678888888999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 402 ~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
+++++++|||||++|+++|.+|++++.+.++++|+++++|++||++||++|++|||+|+.+++.+|++.|.++
T Consensus 356 ~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~ 428 (480)
T cd03337 356 IILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQG 428 (480)
T ss_pred HhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999988999999999999999999999999999999999999999999764
No 21
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-91 Score=654.80 Aligned_cols=464 Identities=37% Similarity=0.596 Sum_probs=443.3
Q ss_pred hhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCC--CCCeEEecCHHHHhhhhcccChhhHHHHH
Q 011829 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVD 84 (476)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~--~g~~~iTnDG~tIl~~l~~~hP~~~ll~~ 84 (476)
.|..+++++...++|..+|.+.+.++..+.++|||||||+||+||++.. .|.+.+||||+|||+++.+++|+|++|++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 3567899999999999999999999999999999999999999999964 46799999999999999999999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHH
Q 011829 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (476)
Q Consensus 85 ~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~t 164 (476)
.++.||+++||||||+++|+++||++|.+|+.+.+||..|+.||+.|...|++.|.+.++... .+.+.++++|+++++|
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns-~~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNS-SDKEKFREDLLKIART 160 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887633 3556789999999999
Q ss_pred HhccCcCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEe
Q 011829 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (476)
Q Consensus 165 sl~sK~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~ 244 (476)
.|+||++++..++|++|+++|+.++....+++.|+|+|..||++.||++-+|+++++.+.. ++|++++|++||+-|
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv----~qpkriena~iLIAN 236 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV----NQPKRIENAKILIAN 236 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC----CCcccccccceEEec
Confidence 9999999999999999999999999765589999999999999999999999999998763 468999999999999
Q ss_pred eecccccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHH
Q 011829 245 IELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (476)
Q Consensus 245 ~~Le~~~~~~-~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le 323 (476)
.+++..+.+. .+.+.+++...+.++...|++.++.++++|.++|+|+.++..-|.++-.++|.+.||+.+...+.+-+|
T Consensus 237 T~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiE 316 (527)
T KOG0363|consen 237 TPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIE 316 (527)
T ss_pred CCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHH
Confidence 9999988877 677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011829 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (476)
Q Consensus 324 ~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~ 403 (476)
|++.+||+.|++.+|+++...+|+|+.+++.-+|++++++|+|++....|||+|||+|+++++|.+|++|||||++....
T Consensus 317 RLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv 396 (527)
T KOG0363|consen 317 RLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 396 (527)
T ss_pred HHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred hCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCCC
Q 011829 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPT 475 (476)
Q Consensus 404 ~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 475 (476)
++.|++.||||.||..|..+.+++.+.+|++..++++|++||..+|.+|+.|+|||+.+++++||+.|+.+.
T Consensus 397 ~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~ 468 (527)
T KOG0363|consen 397 KESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGR 468 (527)
T ss_pred ccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998763
No 22
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-88 Score=701.70 Aligned_cols=450 Identities=38% Similarity=0.591 Sum_probs=428.7
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhccccc
Q 011829 14 EGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEV 93 (476)
Q Consensus 14 ~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 93 (476)
.+.+..+|.+++..|+.|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+|+|+++++++||+++
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~ 81 (524)
T COG0459 2 MGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEA 81 (524)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999999977999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCc
Q 011829 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (476)
Q Consensus 94 GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~ 173 (476)
||||||+|||+++||+++.+++.+|+||+.|++||+.|.+.++++|++++++++..+ .+. +++.|+++||+.++
T Consensus 82 GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~----~~~--~~~~t~v~sk~~~~ 155 (524)
T COG0459 82 GDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE----EEL--KIAITSVASKSANS 155 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch----hhh--hhhhheeeeeeccC
Confidence 999999999999999999999999999999999999999999999999999988664 222 88999999999877
Q ss_pred chHHHHHHHHHHHhhcCCCC-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCC-ceecCceEEEEeeeccccc
Q 011829 174 EKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP-KKFLNPKILLLNIELELKS 251 (476)
Q Consensus 174 ~~~~l~~lv~~ai~~~~~~~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~-~~~~~~~Ill~~~~Le~~~ 251 (476)
+ +.+++++++|+.+++... |.+.|.+++..|+...|+++++|++|++++.+|+| || +.++||+|+++|++|++.+
T Consensus 156 ~-~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~--~~~~~~e~~~Ili~d~~l~~~k 232 (524)
T COG0459 156 D-EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF--MPDKRLENPKILLLDKKLEIKK 232 (524)
T ss_pred h-HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC--CCccccccceEEEEcccccccc
Confidence 6 999999999999998754 67899999999999999999999999998888876 68 8999999999999999999
Q ss_pred cccCceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCe-EEEecccccHHHHHHHHhcCcccccCCCHHHH-HHHHHH
Q 011829 252 EKENAEIRLSDPSQYQSIVDAEW-NIIYDKLDKCVQSGAK-VVLSRLAIGDLATQYFADRDIFCAGRVAEEDL-LRVAAA 328 (476)
Q Consensus 252 ~~~~~~v~~~~~~~~~~~~~~E~-~~l~~~v~~i~~~~~~-lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~l-e~Ia~~ 328 (476)
++.+.++.+++.+++..|.+.|+ +.+...++++.+.+++ +++++++|+|.++++|.+.+|+++++++++++ ++|+++
T Consensus 233 ~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~ 312 (524)
T COG0459 233 PELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKL 312 (524)
T ss_pred ccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHc
Confidence 99999999999999999999998 9999999999999999 99999999999999999999999999999999 899999
Q ss_pred hCCeecccccCCCcccCcc--cccEEEEEECCeEEEEEEcCCC--CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 011829 329 TGGTVQTSVNNVVDEVLGT--CEHFEERQVGNERFNIFSGCPS--GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (476)
Q Consensus 329 tGa~ii~~l~~l~~~~lG~--~~~v~~~~~~~~~~~~~~~~~~--~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 404 (476)
+||++++.++++++..+|. |..+++..++++++.+|+++.. ++.+||+|||+|+.+++|.+|+++|||++++++++
T Consensus 313 ~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave 392 (524)
T COG0459 313 GGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVE 392 (524)
T ss_pred cCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999975 78999999999999999999999999999999999
Q ss_pred CCcccccCcchHHHHHHHHHHHHhhcCc-hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 405 NSTVVAGGGAIDMEISKYLRQESRAIAG-KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 405 ~~~vv~GGG~~E~~ls~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
+|++|||||++|++++..|++++...++ ++|+++++|++|||.||++|++|||+||.+++.+||+.|.
T Consensus 393 ~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~ 461 (524)
T COG0459 393 EGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA 461 (524)
T ss_pred cCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc
Confidence 9999999999999999999998555555 9999999999999999999999999999999999999987
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.1e-87 Score=700.87 Aligned_cols=408 Identities=46% Similarity=0.739 Sum_probs=393.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccCCch
Q 011829 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (476)
Q Consensus 18 ~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 97 (476)
..++.+++..|++||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcchHH
Q 011829 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (476)
Q Consensus 98 tt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ 177 (476)
||+++|+++|++++.+++++|+||..|++||+.|++.+++.|++++++++..+ ++.|.++++|+++||+.+.|++.
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~~ 158 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVED----REELLKVATTSLNSKLVSGGDDF 158 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCC----HHHHHHHhHhcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999865544 68999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCC---CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecccccccc
Q 011829 178 FASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKE 254 (476)
Q Consensus 178 l~~lv~~ai~~~~~~~---~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~~~ 254 (476)
+++++++|+.+++++. +.++|+|++++|+++.||++++|++|++++.+++| +++++||+|++++++|++
T Consensus 159 l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m---~~~~~n~~Ili~~~~Le~----- 230 (464)
T cd00309 159 LGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM---PKRLENAKILLLDCKLEY----- 230 (464)
T ss_pred HHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCC---ceeecCceEEEEecCcce-----
Confidence 9999999999998632 57899999999999999999999999999999876 899999999999999965
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCeec
Q 011829 255 NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (476)
Q Consensus 255 ~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ii 334 (476)
||+++++|++.++++|.++||++++++++++|+|||++|||+++
T Consensus 231 ------------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii 274 (464)
T cd00309 231 ------------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIV 274 (464)
T ss_pred ------------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcc
Q 011829 335 TSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414 (476)
Q Consensus 335 ~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~ 414 (476)
++++++++.++|+|+.|++.++++++|++|++++.++.+||+|||+|+.+++|++|+++||++++++++++|++|||||+
T Consensus 275 ~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa 354 (464)
T cd00309 275 SRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGA 354 (464)
T ss_pred cccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 415 IDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 415 ~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
+|+++|++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 355 ~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~ 413 (464)
T cd00309 355 AEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAE 413 (464)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc
Confidence 99999999999998899999999999999999999999999999999999999999865
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.7e-87 Score=695.14 Aligned_cols=408 Identities=31% Similarity=0.554 Sum_probs=385.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccCCchh
Q 011829 19 SQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTT 98 (476)
Q Consensus 19 ~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGtt 98 (476)
..+.+++..|+.||..|++++++||||+|++|||++..|+++|||||+||+++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhccc-ccCCChHHHHHHHHHHHHHHhccCcCCcchHH
Q 011829 99 TVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKS-IEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (476)
Q Consensus 99 t~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~-v~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ 177 (476)
|+|+|+++||+++.+++++|+||..|++||+.|++.++++|++++++ ++..+ +.+.+.++++|+++||+.+ ++++
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~t~l~sk~~~-~~~~ 159 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR---NKEEVSKALKTAIASKQYG-NEDF 159 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcc---CHHHHHHHHHHHhcccccc-hHHH
Confidence 99999999999999999999999999999999999999999999876 43221 2678999999999999976 7899
Q ss_pred HHHHHHHHHhhcCCC---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccccccc
Q 011829 178 FASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEK 253 (476)
Q Consensus 178 l~~lv~~ai~~~~~~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~~ 253 (476)
|++++++|+..++++ . +.++|+|++++|++.+||++++|++|++.+. .++++++||+|++++++|++
T Consensus 160 l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~-----~~~~~~~n~~Ili~~~~Le~---- 230 (472)
T cd03341 160 LSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE-----GSVKRVKKAKVAVFSCPFDI---- 230 (472)
T ss_pred HHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC-----CCceeccCCcEEEEeccccC----
Confidence 999999999999764 2 6789999999999999999999999987653 23588999999999999865
Q ss_pred cCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCee
Q 011829 254 ENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTV 333 (476)
Q Consensus 254 ~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~i 333 (476)
|++||+++++|+|.++++|+++||++++++++++|+|||++|||++
T Consensus 231 ----------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~i 276 (472)
T cd03341 231 ----------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATP 276 (472)
T ss_pred ----------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEE
Confidence 8999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccCcccccEEEEEECCeEEEEEEcCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccC
Q 011829 334 QTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGG 412 (476)
Q Consensus 334 i~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GG 412 (476)
++++++++++++|+|+.|++.++|+++|++|++|+. ++.+||+|||+|+.+++|.||+++||++++++++++|++||||
T Consensus 277 i~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGG 356 (472)
T cd03341 277 LPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGA 356 (472)
T ss_pred ecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCc
Confidence 999999999999999999999999999999999977 8899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 413 GAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 413 G~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
|++|++++.+|++++...++++++++++|++||+.||++|++|||+||.+++.+|+..|..
T Consensus 357 G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 417 (472)
T cd03341 357 GATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQK 417 (472)
T ss_pred CHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 9999999999999988889999999999999999999999999999999999999998855
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=5e-84 Score=679.90 Aligned_cols=431 Identities=42% Similarity=0.693 Sum_probs=410.5
Q ss_pred HHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHH
Q 011829 35 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPF 114 (476)
Q Consensus 35 l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~l 114 (476)
|+++|++||||+|++|||++..|++++||||+||+++|+++||+++++++++++|++++||||||+|+|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcchHHHHHHHHHHHhhcCCCCC
Q 011829 115 IEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR 194 (476)
Q Consensus 115 i~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~lv~~ai~~~~~~~~ 194 (476)
+++|+||..|++||+.|++.+++.|++++++++..+ +.++++++|++++|+.+.|.+.|++++++|+..+....+
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-----~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~ 155 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-----ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFD 155 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-----HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHH
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-----hhhhhhhcccccccccccchhhhhhhHHHHHHhhccccc
Confidence 999999999999999999999999999999988653 799999999999999999999999999999944432225
Q ss_pred ccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHH
Q 011829 195 LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEW 274 (476)
Q Consensus 195 ~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~ 274 (476)
.+.++++++.|++++||++++|++|++++.++. |++++++|+|++++++|++.++ .+.++.+++.++++++.++|+
T Consensus 156 ~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~---~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~ 231 (485)
T PF00118_consen 156 LDNIKIIKIPGGSISDSELINGIVLDKGFSSPN---MPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEK 231 (485)
T ss_dssp GGGEEEEEEESSSSGGEEEESEEEESSSBSSTT---SBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHH
T ss_pred ccchhhhhhccccccccccccceeeeccccccc---cccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhh
Confidence 667999999999999999999999999999874 5899999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEE
Q 011829 275 NIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEER 354 (476)
Q Consensus 275 ~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~ 354 (476)
++++++++++.+.+++||+++++|++.++++|.++||.++++++.++|++|+++|||++++++++++++++|+|+.+++.
T Consensus 232 ~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~ 311 (485)
T PF00118_consen 232 KYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEER 311 (485)
T ss_dssp HHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEE
T ss_pred hhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred EECCeEEEEEE--cCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCc
Q 011829 355 QVGNERFNIFS--GCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432 (476)
Q Consensus 355 ~~~~~~~~~~~--~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~ 432 (476)
.+++++|++|+ ++...+.+||+|||+++.+++|++++++||+++++++++++++|||||++|++|+.+|++++.+.++
T Consensus 312 ~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 391 (485)
T PF00118_consen 312 EIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSG 391 (485)
T ss_dssp EETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSS
T ss_pred ccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccC
Confidence 99999999999 5788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 433 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++++++++|++||+.||++|++|||+|+.+++++|+..|..+
T Consensus 392 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~ 433 (485)
T PF00118_consen 392 KEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNG 433 (485)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST
T ss_pred chhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccc
Confidence 999999999999999999999999999999999999988654
No 26
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-84 Score=628.92 Aligned_cols=451 Identities=36% Similarity=0.608 Sum_probs=429.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccC
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (476)
+++...|...|..|..|+..++++|++||||-|++||++++.|++++||||+|||+.+.++||++++|++.++.||+++|
T Consensus 11 ~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evg 90 (545)
T KOG0360|consen 11 KGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVG 90 (545)
T ss_pred cCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhcccccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHh-hcccccCCChHHHHHHHHHHHHHHhccCcCCc
Q 011829 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (476)
Q Consensus 95 DGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~-~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~ 173 (476)
||||++|+++++|++++.+|+..++||+.|+.||+.|+..+++++.+ .++|++... +..|.++++|+|+||++..
T Consensus 91 Dgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg----~~~Lin~~ktsmsSK~i~~ 166 (545)
T KOG0360|consen 91 DGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLG----TQILINLAKTSMSSKIIGM 166 (545)
T ss_pred CCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcc----hHHHHHHHHhhhcceeccc
Confidence 99999999999999999999999999999999999999999999876 678888765 7899999999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCC-------CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeee
Q 011829 174 EKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 174 ~~~~l~~lv~~ai~~~~~~~-------~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~ 246 (476)
..++|++++++|+..+..-+ +.+.++|.+-.|.+.-||.++.|+.++...++-. ||.++.++||+++++.
T Consensus 167 ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~---m~~~i~~~Kiacld~~ 243 (545)
T KOG0360|consen 167 DSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQM---MPLRIKNAKIACLDFT 243 (545)
T ss_pred chHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhc---cccccccceeeeEecc
Confidence 99999999999998775321 5788999999999999999999999999988643 6899999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHH
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVA 326 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia 326 (476)
|...+.+....+.+.++++++++.+.|....++.+++|...|+|||+++++|||+.++||.+.|+++++|+++++|++|+
T Consensus 244 Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~ia 323 (545)
T KOG0360|consen 244 LQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIA 323 (545)
T ss_pred cccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccccCC------CcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 011829 327 AATGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (476)
Q Consensus 327 ~~tGa~ii~~l~~l------~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 400 (476)
++||+++++++.++ .+..+|+|+.|.+.+|+++.++++.|.+.. .++|+|||++++.++|++|++||||++++
T Consensus 324 katGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~Vlk 402 (545)
T KOG0360|consen 324 KATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLK 402 (545)
T ss_pred HhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHH
Confidence 99999999998754 566899999999999999999999998665 99999999999999999999999999999
Q ss_pred HHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 401 RATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 401 ~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
..++.+++||||||+|.+|+-+|+.|+.+..++||.++..|+.||..||++|+-|++.|+.+++++||+.|+.
T Consensus 403 rtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~ 475 (545)
T KOG0360|consen 403 RTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSV 475 (545)
T ss_pred HHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=8.3e-82 Score=660.66 Aligned_cols=410 Identities=23% Similarity=0.358 Sum_probs=376.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhcccc
Q 011829 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (476)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (476)
...+|.+++..|+.||+.++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| ++++++++|++||++
T Consensus 4 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 83 (542)
T PRK12849 4 IIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDV 83 (542)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCc
Confidence 4578999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCC
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 172 (476)
+||||||+|+|+++||+++.+|+++|+||..|++||+.|++.+++.|+++++|++ + .+.|.++++|++
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~----~~~l~~va~ts~------ 151 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--G----SEEIAQVATISA------ 151 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999886 2 467999999984
Q ss_pred cchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCccc-ceEEEeEEEeeccCCcccc----CCCceecCceEEEEeeec
Q 011829 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 173 ~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~d-s~li~G~vl~~~~~~~~~~----~~~~~~~~~~Ill~~~~L 247 (476)
++++.+++++++|+..++.+ +.+.+. .|++.+| +++++|++|+++|.+|+|. .+++.++||+|+++|+.+
T Consensus 152 ~~~~~l~~lv~~Av~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i 226 (542)
T PRK12849 152 NGDEEIGELIAEAMEKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI 226 (542)
T ss_pred CChHHHHHHHHHHHHHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc
Confidence 47899999999999999754 334443 6888876 8999999999999999883 578999999999999965
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhc------CcccccCCC---
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~------~I~~i~~v~--- 318 (476)
+++++ +.++++++.+.+++|||++++|++.++++|.++ +|+++++++
T Consensus 227 -------------~~~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~ 282 (542)
T PRK12849 227 -------------SSLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGD 282 (542)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccc
Confidence 34444 345789999999999999999999999999988 999998877
Q ss_pred --HHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcCCCC---------------------
Q 011829 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (476)
Q Consensus 319 --~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~--------------------- 370 (476)
+++++|||.+|||++++ ++++++++++|+|+.|++. .++++++++|.++
T Consensus 283 ~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~ 359 (542)
T PRK12849 283 RRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTIT---KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDY 359 (542)
T ss_pred hhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEe---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHH
Confidence 55699999999999999 6899998999999999975 4889999988764
Q ss_pred --------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHH
Q 011829 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (476)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~ 436 (476)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++ +.++++|+
T Consensus 360 ~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~ 437 (542)
T PRK12849 360 DREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAA 437 (542)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHH
Confidence 489999999999999999999999999999999998 99999999999999999998 88999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
++++|++||+.||++|++|||+|+.+++++|++.|.
T Consensus 438 ~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~~ 473 (542)
T PRK12849 438 GVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELED 473 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence 999999999999999999999999999999998874
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-81 Score=659.85 Aligned_cols=411 Identities=24% Similarity=0.392 Sum_probs=379.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~ 91 (476)
.+..+|.+++..|+.||+.++++|+|||||+|++|||+++.|+++|||||+||+++|+++|| +++++++++++||+
T Consensus 3 ~~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~ 82 (542)
T PRK00013 3 KDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 82 (542)
T ss_pred chhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCc
Confidence 35678999999999999999999999999999999999999999999999999999999999 69999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ + .+.|.++++|++
T Consensus 83 e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~----~~~l~~va~ts~----- 151 (542)
T PRK00013 83 VAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--D----KEEIAQVATISA----- 151 (542)
T ss_pred ccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHhcc-----
Confidence 99999999999999999999999999999999999999999999999999999886 2 468999999884
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCcccc----CCCceecCceEEEEeeec
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~----~~~~~~~~~~Ill~~~~L 247 (476)
++++.+++++++|+..++.+ +.|.|.+..| ...++++++|++|+++|.+|+|. .+++.++||+|+++|+.+
T Consensus 152 -~~~~~ls~lv~~Av~~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i 226 (542)
T PRK00013 152 -NGDEEIGKLIAEAMEKVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI 226 (542)
T ss_pred -cchHHHHHHHHHHHHHhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc
Confidence 37899999999999999754 3577777666 77899999999999999999883 568899999999999964
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcC------cccccCCC---
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGRVA--- 318 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~------I~~i~~v~--- 318 (476)
+++++ +.++++++.+.+++|||++++|++.++++|..++ |+++++++
T Consensus 227 -------------~~~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~ 282 (542)
T PRK00013 227 -------------SNIQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGD 282 (542)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCccc
Confidence 34544 3477899999999999999999999999999886 88888776
Q ss_pred --HHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcCCCCc--------------------
Q 011829 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR-------------------- 371 (476)
Q Consensus 319 --~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~-------------------- 371 (476)
+++|+|||.+||+++++ ++++++++++|+|+.|++.. +++++|+++.+++
T Consensus 283 ~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 359 (542)
T PRK00013 283 RRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGDKEAIKARVAQIKAQIEETTSDY 359 (542)
T ss_pred chhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHH
Confidence 88999999999999999 79999999999999999863 8999999887654
Q ss_pred ---------------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHH
Q 011829 372 ---------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (476)
Q Consensus 372 ---------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~ 436 (476)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|+++ .+.++++|+
T Consensus 360 ~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~ 437 (542)
T PRK00013 360 DREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEAT 437 (542)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHH
Confidence 78999999999999999999999999999999998 9999999999999999998 778999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 011829 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH 471 (476)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h 471 (476)
++++|++||+.||++|++|||+|+.+++++|++.|
T Consensus 438 ~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~ 472 (542)
T PRK00013 438 GINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK 472 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999988
No 29
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-84 Score=619.27 Aligned_cols=463 Identities=31% Similarity=0.564 Sum_probs=447.0
Q ss_pred CchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHH
Q 011829 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (476)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~ 84 (476)
||+|...+..+.....|..+...|++|+++++++++||+||+.|.||+.++.|.+..||||..||+++++.||+|+-+.+
T Consensus 1 m~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmie 80 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIE 80 (527)
T ss_pred CCCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhh
Confidence 45777788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHH
Q 011829 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (476)
Q Consensus 85 ~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~t 164 (476)
++.+||+++||||||+++|++++|.++..++++|+||+.|+++|.+|++.++..++.++++++..+ ...++.+..+
T Consensus 81 l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~----~~km~~vi~~ 156 (527)
T KOG0364|consen 81 LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKD----QAKMLRVINS 156 (527)
T ss_pred hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCccc----HHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999876 6789999999
Q ss_pred HhccCcCCcchHHHHHHHHHHHhhcCCCC----C-ccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCce
Q 011829 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGD----R-LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPK 239 (476)
Q Consensus 165 sl~sK~~~~~~~~l~~lv~~ai~~~~~~~----~-~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~ 239 (476)
++.+|+.+.|.+..+++..+|+.+++.++ | ..++++.|++||.+.+|++++|+.+.+.+.||.| +..++|||
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkm---rr~Ienpr 233 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKM---RRAIENPR 233 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHH---HHHhhcCc
Confidence 99999999999999999999999998763 4 5788999999999999999999999999999865 78999999
Q ss_pred EEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCH
Q 011829 240 ILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (476)
Q Consensus 240 Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~ 319 (476)
|+++||||+|.+.++++++.+...+++...++.|+++++..++.++...++||++.++++|.+++||.+.||++++++++
T Consensus 234 ivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rK 313 (527)
T KOG0364|consen 234 IVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRK 313 (527)
T ss_pred EEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeecccccCCCcccCcc-cccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHH
Q 011829 320 EDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (476)
Q Consensus 320 ~~le~Ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~ 398 (476)
.|-.||++++||+++++.+|+.+.+.|+ |+.|+..++|++.|.||..|..++.|||++|||++.+++|.+|.+.||+.+
T Consensus 314 tDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~v 393 (527)
T KOG0364|consen 314 TDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGV 393 (527)
T ss_pred cccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999996 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 399 VRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 399 ~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
.|+.+-+|+++||||++||++|+.|++.+...++-+|..+.+.|.|||.+||+|++|||.+|+..++.++..|+.+
T Consensus 394 arn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G 469 (527)
T KOG0364|consen 394 ARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEG 469 (527)
T ss_pred HHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999998888999999999999999999999999999999999999999999876
No 30
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.5e-81 Score=655.49 Aligned_cols=410 Identities=24% Similarity=0.391 Sum_probs=377.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhcccc
Q 011829 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (476)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (476)
+..+|.+++..|+.+|+.++++++|||||+|++|||+++.|+++|||||+||+++|+++|| +++++++++++||++
T Consensus 2 ~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 81 (520)
T cd03344 2 DIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 81 (520)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccc
Confidence 3567899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCC
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 172 (476)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ + .+.|.++|+|+++
T Consensus 82 ~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~----~~~l~~va~ts~~----- 150 (520)
T cd03344 82 AGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--T----KEEIAQVATISAN----- 150 (520)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC-----
Confidence 9999999999999999999999999999999999999999999999999999986 3 5789999999975
Q ss_pred cchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCccc-ceEEEeEEEeeccCCcccc----CCCceecCceEEEEeeec
Q 011829 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 173 ~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~d-s~li~G~vl~~~~~~~~~~----~~~~~~~~~~Ill~~~~L 247 (476)
.++.+++++++|+..++.+ +.|.+ .+|++..| +++++|++|++++.+|+|. .++++++||+|+++|++|
T Consensus 151 -~~~~l~~lv~~A~~~v~~~---~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l 224 (520)
T cd03344 151 -GDEEIGELIAEAMEKVGKD---GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI 224 (520)
T ss_pred -ChHHHHHHHHHHHHHhccC---CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC
Confidence 4799999999999998754 33433 58888888 7999999999999999983 355789999999999986
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCc------cccc-----C
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAG-----R 316 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I------~~i~-----~ 316 (476)
+++++ +.++++++.+.+++|||++++|++.++++|.++|| ++++ +
T Consensus 225 -------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~ 280 (520)
T cd03344 225 -------------SSIQE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGD 280 (520)
T ss_pred -------------CCHHH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCc
Confidence 34444 45568999999999999999999999999999998 6654 5
Q ss_pred CCHHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcCCCC---------------------
Q 011829 317 VAEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (476)
Q Consensus 317 v~~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~--------------------- 370 (476)
+++++++|||++|||++++ ++++++++++|+|+.|++.+ ++++++++|..+
T Consensus 281 ~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 357 (520)
T cd03344 281 RRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDY 357 (520)
T ss_pred ccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 5999999999999999999 78888888999999999865 789999988664
Q ss_pred --------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHH
Q 011829 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (476)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~ 436 (476)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|++++. .++++|+
T Consensus 358 ~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~ 435 (520)
T cd03344 358 DKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKL 435 (520)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHH
Confidence 599999999999999999999999999999999998 999999999999999999987 9999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
++++|++||+.||++|++|||+||.+++++|++.|.
T Consensus 436 ~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~ 471 (520)
T cd03344 436 GIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD 471 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999885
No 31
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.1e-80 Score=653.25 Aligned_cols=408 Identities=23% Similarity=0.375 Sum_probs=375.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhcccc
Q 011829 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (476)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (476)
+..+|.+++..|+.+|..|+++|+|||||+|++|||+++.|+++|||||+||+++|+++|| +++|+++++++||++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 5788899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCC
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 172 (476)
+||||||+|+||++||+++.+++++|+||..|++||+.|.+.+++.|++++++++ + .+.|.++|+|+++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~----~~~l~~va~ts~~----- 164 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--T----KEDILNVATISAN----- 164 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHHcC-----
Confidence 9999999999999999999999999999999999999999999999999999886 2 4679999999854
Q ss_pred cchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccc-eEEEeEEEeeccCCccc----cCCCceecCceEEEEeeec
Q 011829 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 173 ~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds-~li~G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~~~L 247 (476)
+++.+++++++|+..++.+ + .|.+.+|+++.|| ++++|++|+++|.+|+| ..|++.++||+|+++|++|
T Consensus 165 -~~~~l~~li~eAv~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L 238 (555)
T PTZ00114 165 -GDVEIGSLIADAMDKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKI 238 (555)
T ss_pred -ChHHHHHHHHHHHHHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCC
Confidence 4788999999999999754 1 2566789999998 79999999999999998 4578999999999999998
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcC------cccccC-----
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGR----- 316 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~------I~~i~~----- 316 (476)
+ ++++ +.+.++++.+.+++|+|++++|++.++++|..++ |+++++
T Consensus 239 ~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~ 294 (555)
T PTZ00114 239 S-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGD 294 (555)
T ss_pred C-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCc
Confidence 5 2333 5677889999999999999999999999999886 888855
Q ss_pred CCHHHHHHHHHHhCCeecccc------cCCCcccCcccccEEEEEECCeEEEEEEcCC----------------------
Q 011829 317 VAEEDLLRVAAATGGTVQTSV------NNVVDEVLGTCEHFEERQVGNERFNIFSGCP---------------------- 368 (476)
Q Consensus 317 v~~~~le~Ia~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~---------------------- 368 (476)
+++++|+|||.+||++++++. ++++++++|+|+.|++.+ +++++++++.
T Consensus 295 ~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~ 371 (555)
T PTZ00114 295 NRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSE 371 (555)
T ss_pred chHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCH
Confidence 788999999999999999997 788888999999999977 5666776665
Q ss_pred -------------CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHh--hcCch
Q 011829 369 -------------SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR--AIAGK 433 (476)
Q Consensus 369 -------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~--~~~~~ 433 (476)
.++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|++++. +.+++
T Consensus 372 ~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~ 450 (555)
T PTZ00114 372 YDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPD 450 (555)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchH
Confidence 56799999999999999999999999999999999988 999999999999999999875 57899
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 011829 434 SQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQ 469 (476)
Q Consensus 434 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~ 469 (476)
+|+++++|++||+.||++|++|||+|+.+++++|++
T Consensus 451 ~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~ 486 (555)
T PTZ00114 451 QRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE 486 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999986
No 32
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-80 Score=651.42 Aligned_cols=412 Identities=24% Similarity=0.364 Sum_probs=376.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~ 91 (476)
....++.+++..|+.+++.++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| ++++++++|++||+
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 83 (541)
T PRK12851 4 KEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTND 83 (541)
T ss_pred ceecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhH
Confidence 34677889999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|++++++++. .+.+.+++++++
T Consensus 84 e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~------~~~l~~va~~s~----- 152 (541)
T PRK12851 84 VAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTT------NAEIAQVATISA----- 152 (541)
T ss_pred hhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC------HHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999998862 467899998874
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCcccc----CCCceecCceEEEEeeec
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~----~~~~~~~~~~Ill~~~~L 247 (476)
++++.|++++++|+..++.+ +.|.+.+.. +...++++++|++|+++|.+|+|. .|+++++||+|+++|+++
T Consensus 153 -~~~~~l~~lv~~Av~~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i 227 (541)
T PRK12851 153 -NGDAEIGRLVAEAMEKVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKI 227 (541)
T ss_pred -cChHHHHHHHHHHHHHhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCc
Confidence 47899999999999999754 355665544 456789999999999999999873 478999999999999985
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCc------cccc-----C
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAG-----R 316 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I------~~i~-----~ 316 (476)
+ +.++ +.++++++.+.+++|||++++|++.++++|.+++| ++++ +
T Consensus 228 ~-------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~ 283 (541)
T PRK12851 228 S-------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGD 283 (541)
T ss_pred C-------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCcccc
Confidence 2 2222 66789999999999999999999999999999997 5555 5
Q ss_pred CCHHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcCCCCc--------------------
Q 011829 317 VAEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR-------------------- 371 (476)
Q Consensus 317 v~~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~-------------------- 371 (476)
+++++++|||++|||++++ ++++++++++|+|+.|++.+ ++++++.+|.++.
T Consensus 284 ~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (541)
T PRK12851 284 RRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDY 360 (541)
T ss_pred ccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999 68889888999999999866 8899999886643
Q ss_pred ---------------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHH
Q 011829 372 ---------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (476)
Q Consensus 372 ---------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~ 436 (476)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|+++|.+|++++.. ++++|+
T Consensus 361 ~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~ 438 (541)
T PRK12851 361 DREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRT 438 (541)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHH
Confidence 88999999999999999999999999999999998 9999999999999999998876 899999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
++++|++||+.||++|++|||+|+.+++++|++.|.
T Consensus 439 ~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~ 474 (541)
T PRK12851 439 GVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKPG 474 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Confidence 999999999999999999999999999999998874
No 33
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.1e-80 Score=648.15 Aligned_cols=412 Identities=23% Similarity=0.369 Sum_probs=373.9
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChh----hHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----~~ll~~~~~~~~~ 91 (476)
....++.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++++++++++||+
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~ 83 (544)
T PRK12850 4 KEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTND 83 (544)
T ss_pred ceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcc
Confidence 346788899999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|++++++++ + .+.|.++++++++
T Consensus 84 e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~~~l~~va~~s~~---- 153 (544)
T PRK12850 84 LAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--S----SKEIAQVATISAN---- 153 (544)
T ss_pred hhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC----
Confidence 99999999999999999999999999999999999999999999999999999886 2 4679999998854
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccc----cCCCceecCceEEEEeeec
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~~~L 247 (476)
.++.+++++++|+..++++ +.|.+.... ..-.++++++|++|++++.+|+| .++++.++||+|+++|+.+
T Consensus 154 --~~~~l~~lv~eAv~~vg~~---g~i~v~~~~-~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i 227 (544)
T PRK12850 154 --GDESIGEMIAEAMDKVGKE---GVITVEEAK-TLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI 227 (544)
T ss_pred --CHHHHHHHHHHHHHHhccc---CceeeEEcc-ccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc
Confidence 4789999999999999754 233333221 11157899999999999999988 2468899999999999964
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCc------ccccC-----
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAGR----- 316 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I------~~i~~----- 316 (476)
++.++ +.++++++.+.+++|||++++|+|.++++|.+++| +++++
T Consensus 228 -------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~ 283 (544)
T PRK12850 228 -------------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGD 283 (544)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCc
Confidence 22222 67889999999999999999999999999999999 77666
Q ss_pred CCHHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcCCCCc--------------------
Q 011829 317 VAEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR-------------------- 371 (476)
Q Consensus 317 v~~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~-------------------- 371 (476)
+++++++|||++|||++++ ++++++++++|+|+.|++.. +++++|++|.+++
T Consensus 284 ~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (544)
T PRK12850 284 RRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDY 360 (544)
T ss_pred ccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHH
Confidence 9999999999999999999 68899988999999999865 7899999887643
Q ss_pred ---------------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHH
Q 011829 372 ---------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (476)
Q Consensus 372 ---------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~ 436 (476)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ .+.++++|+
T Consensus 361 ~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~ 438 (544)
T PRK12850 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETA 438 (544)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHH
Confidence 89999999999999999999999999999999997 9999999999999999998 678899999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
++++|++||+.||++|++|||+|+.+++++|++.|.
T Consensus 439 ~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~~ 474 (544)
T PRK12850 439 GIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELPG 474 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Confidence 999999999999999999999999999999998874
No 34
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4.7e-80 Score=647.17 Aligned_cols=408 Identities=23% Similarity=0.368 Sum_probs=372.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhcccc
Q 011829 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (476)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 92 (476)
+..+|.+++..|+.|++.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++++++++++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 4578899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCC
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 172 (476)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ + .+.+.++++|+.
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~----~~~l~~va~ts~------ 150 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--G----KKEIAQVATISA------ 150 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999886 3 478999999884
Q ss_pred cchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCc-ccceEEEeEEEeeccCCccc----cCCCceecCceEEEEeeec
Q 011829 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 173 ~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~-~ds~li~G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~~~L 247 (476)
++++.+++++++|+..++.+ +.|.+. .|+.. .++++++|++|+++|.+|+| +.+++.++||+|+++|+++
T Consensus 151 ~~~~~l~~lv~~A~~~v~~~---~~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i 225 (524)
T TIGR02348 151 NNDEEIGSLIAEAMEKVGKD---GVITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI 225 (524)
T ss_pred cChHHHHHHHHHHHHHhCcC---CcEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc
Confidence 46899999999999999754 345544 36666 66999999999999999987 3468899999999999965
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhc------CcccccCCCH--
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVAE-- 319 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~------~I~~i~~v~~-- 319 (476)
+++++ +.++++++.+.+++|||++++|++.++++|.++ +|+++++++.
T Consensus 226 -------------~~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~ 281 (524)
T TIGR02348 226 -------------SNIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGD 281 (524)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccc
Confidence 34444 467789999999999999999999999999876 7889877654
Q ss_pred ---HHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcCCCCc--------------------
Q 011829 320 ---EDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR-------------------- 371 (476)
Q Consensus 320 ---~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~-------------------- 371 (476)
++++|||++|||++++ ++++++++++|+|+.|++.. +++++++++..++
T Consensus 282 ~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~ 358 (524)
T TIGR02348 282 RRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDY 358 (524)
T ss_pred hhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 8999999999999999 89999999999999999864 7889998876543
Q ss_pred ---------------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHH
Q 011829 372 ---------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (476)
Q Consensus 372 ---------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~ 436 (476)
.+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|+++|.+|++ +.+.++++|+
T Consensus 359 ~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~ 436 (524)
T TIGR02348 359 DREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAI 436 (524)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHH
Confidence 68999999999999999999999999999999998 999999999999999998 7788999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 011829 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQK 470 (476)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 470 (476)
++++|++||+.||++|++|||+||.+++++|++.
T Consensus 437 ~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~ 470 (524)
T TIGR02348 437 GIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES 470 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999865
No 35
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-79 Score=597.22 Aligned_cols=461 Identities=27% Similarity=0.476 Sum_probs=427.4
Q ss_pred CCCC-Cchh-hhhccccccccccH-HHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh
Q 011829 1 MAAM-MQPQ-IILLKEGTDTSQGK-AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP 77 (476)
Q Consensus 1 ~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP 77 (476)
||.+ +++. -..+++|+.+.+|. ++...|+.||++++++++|+|||+||+||++|+.|+..+|||.+||+++++++||
T Consensus 1 M~~~vp~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP 80 (537)
T KOG0362|consen 1 MALTVPKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP 80 (537)
T ss_pred CCccCCCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc
Confidence 6663 4443 34579998887775 4889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHH
Q 011829 78 AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRL 157 (476)
Q Consensus 78 ~~~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~ 157 (476)
+++||+++++.|+++.||||+++|+|+++||++|.+|+..|++|..|++||+.|.+.+++.|+++.+..-.+. ++.+
T Consensus 81 aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~--~d~~- 157 (537)
T KOG0362|consen 81 AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDL--EDKE- 157 (537)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccc--cChH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999755311111 1122
Q ss_pred HHHHHHHHhccCcCCcchHHHHHHHHHHHhhcCCC--CCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCcee
Q 011829 158 LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG--DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKF 235 (476)
Q Consensus 158 l~~va~tsl~sK~~~~~~~~l~~lv~~ai~~~~~~--~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~ 235 (476)
.++++++.||-.. ..+++++++++|+..+.+. .+.++|+++++.|++.++|+++.|++|++.+. ..++..
T Consensus 158 --~~~rs~i~skq~~-~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e-----G~v~~a 229 (537)
T KOG0362|consen 158 --WALRSVIMSKQYG-NEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE-----GEVKSA 229 (537)
T ss_pred --HHHHHHHHHhhcc-hHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccC-----Cccccc
Confidence 7888888888755 5789999999999999875 37899999999999999999999999998875 235788
Q ss_pred cCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCccccc
Q 011829 236 LNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG 315 (476)
Q Consensus 236 ~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~ 315 (476)
+++||.+++||++...++.++++.+++++++.+|.+.|...++.+++.|...|+++|++.+.+++++++||++.+|++++
T Consensus 230 k~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlq 309 (537)
T KOG0362|consen 230 KDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQ 309 (537)
T ss_pred ccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCC-CCceEEEEecCCCHHHHHHHHHHHHH
Q 011829 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHD 394 (476)
Q Consensus 316 ~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~-~~~~~TIll~G~t~~~l~e~~~~i~d 394 (476)
--++.||+|+|+..||++++++..+.+..+|+|++|....+|+.+++.|.... ..+..|++|||++...+|+.||+++|
T Consensus 310 i~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVdd 389 (537)
T KOG0362|consen 310 INSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDD 389 (537)
T ss_pred eccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999654 56899999999999999999999999
Q ss_pred HHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 395 AIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 395 al~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
+++..+...++++++||+|++|++|+..|.+++..++|..|+++++||+||+.+|++|++|+|+++.+++++|.+.|.
T Consensus 390 gV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~ 467 (537)
T KOG0362|consen 390 GVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ 467 (537)
T ss_pred hHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
No 36
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.8e-79 Score=643.14 Aligned_cols=411 Identities=23% Similarity=0.349 Sum_probs=373.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcc----cChhhHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDI----VHPAAKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~----~hP~~~ll~~~~~~~~~ 91 (476)
.++.+|.+++..|+.++..++++|+|||||+||+|||+++.|+++|||||+||+++|++ +||+++++++++++|++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~ 83 (545)
T PRK12852 4 KDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTND 83 (545)
T ss_pred chhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCc
Confidence 35678889999999999999999999999999999999999999999999999999999 59999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+|+||++||+++.+|+++|+||..|++||+.|++.+++.|+++++|++. .+.+.++++++.+
T Consensus 84 e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~------~~~l~~va~~s~~---- 153 (545)
T PRK12852 84 LAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVAS------SAEIAQVGTISAN---- 153 (545)
T ss_pred eecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHhhhcC----
Confidence 999999999999999999999999999999999999999999999999999998863 2468999988754
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCc-ccceEEEeEEEeeccCCccc----cCCCceecCceEEEEeee
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~-~ds~li~G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~~~ 246 (476)
.++.+++++++|+.+++++ +.|.+. .|+.. .++++++|++|+++|.+|+| ..|+..++||+|+++++.
T Consensus 154 --~~~~l~~li~eA~~~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~ 226 (545)
T PRK12852 154 --GDAAIGKMIAQAMQKVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKK 226 (545)
T ss_pred --ChHHHHHHHHHHHHHhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCc
Confidence 3789999999999999864 334443 46665 68999999999999999987 246788999999999886
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhc------CcccccCCC--
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA-- 318 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~------~I~~i~~v~-- 318 (476)
+ ++++ .+.+.++.+.+.+++|||++++|++.++++|..+ +|+++++.+
T Consensus 227 i-------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~ 282 (545)
T PRK12852 227 L-------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFG 282 (545)
T ss_pred c-------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcc
Confidence 4 2332 3677899999999999999999999999999875 799987655
Q ss_pred ---HHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcCCCC--------------------
Q 011829 319 ---EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-------------------- 370 (476)
Q Consensus 319 ---~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------- 370 (476)
+++++|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.++..+
T Consensus 283 ~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~ 359 (545)
T PRK12852 283 DRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSD 359 (545)
T ss_pred cchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccH
Confidence 89999999999999999 68999989999999999876 688999887653
Q ss_pred ---------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHH
Q 011829 371 ---------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQ 435 (476)
Q Consensus 371 ---------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~ 435 (476)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.. ++++|
T Consensus 360 ~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q 437 (545)
T PRK12852 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQ 437 (545)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHH
Confidence 789999999999999999999999999999999998 9999999999999999998866 88999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 436 FFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 436 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
+++++|++||+.||++|++|||+|+.+++++|++.|.
T Consensus 438 ~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~~ 474 (545)
T PRK12852 438 AGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKS 474 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999998884
No 37
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2.6e-78 Score=634.72 Aligned_cols=410 Identities=21% Similarity=0.325 Sum_probs=365.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhh----HHHHHHHHhcccc
Q 011829 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAA----KILVDIAKSQDSE 92 (476)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~----~ll~~~~~~~~~~ 92 (476)
+..++.++++..+++|+.++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++ +|+++++.+|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 467888999999999999999999999999999999999999999999999999999999998 5888899999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCC
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 172 (476)
+||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ + .+.|.++|+++++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d----~~~L~~VA~ts~~----- 152 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--D----IQAITQVASISAG----- 152 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHhcc-----
Confidence 9999999999999999999999999999999999999999999999999999986 3 5679999999854
Q ss_pred cchHHHHHHHHHHHhhcCCCCCccceeeeeeCCC-CcccceEEEeEEEeeccCCccccCCC----ceecCceEEEEeeec
Q 011829 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGG-TMRDSFLVNGVAFKKTFSYAGFEQQP----KKFLNPKILLLNIEL 247 (476)
Q Consensus 173 ~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~-~~~ds~li~G~vl~~~~~~~~~~~~~----~~~~~~~Ill~~~~L 247 (476)
+++.|++++++|+..++++ +.|.+. .|+ ...++++++|++|+++|.+|+|..++ .+++||+|+++|++|
T Consensus 153 -~~~~l~~lv~eAv~~vg~~---g~i~~~--~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~l 226 (529)
T CHL00093 153 -NDEEVGSMIADAIEKVGRE---GVISLE--EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKI 226 (529)
T ss_pred -ChHHHHHHHHHHHHHhccC---Cceeec--CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCC
Confidence 7899999999999999754 233331 222 34668999999999999999985444 469999999999999
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHH--Hh----cCcccccCCC---
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYF--AD----RDIFCAGRVA--- 318 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l--~~----~~I~~i~~v~--- 318 (476)
++.+. .+.+.++.+.+.+++++|++++|++.++..| ++ .+|+++++++
T Consensus 227 e~~~~-----------------------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~ 283 (529)
T CHL00093 227 TLVQQ-----------------------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGD 283 (529)
T ss_pred CchHH-----------------------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCc
Confidence 76421 2678889999999999999999999555544 77 5899999884
Q ss_pred --HHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcC---------CCC------------
Q 011829 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGC---------PSG------------ 370 (476)
Q Consensus 319 --~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~---------~~~------------ 370 (476)
+++++|||.+|||++++ +++++++.++|+|+.|++.. +++++++++ +..
T Consensus 284 ~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 360 (529)
T CHL00093 284 RRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYE 360 (529)
T ss_pred chHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHH
Confidence 48899999999999999 68999999999999999864 788888742 111
Q ss_pred -------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHh-hcCchHHH
Q 011829 371 -------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR-AIAGKSQF 436 (476)
Q Consensus 371 -------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~-~~~~~~~~ 436 (476)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++. ..++++|+
T Consensus 361 ~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~ 439 (529)
T CHL00093 361 KEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELI 439 (529)
T ss_pred HHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHH
Confidence 378899999999999999999999999999999998 999999999999999999887 78999999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 011829 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQK 470 (476)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 470 (476)
++++|++||+.||++|++|||+|+.+++++|+..
T Consensus 440 ~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~ 473 (529)
T CHL00093 440 GALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ 473 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc
Confidence 9999999999999999999999999999999764
No 38
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-80 Score=590.46 Aligned_cols=453 Identities=26% Similarity=0.492 Sum_probs=431.3
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhccc
Q 011829 12 LKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDS 91 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~ 91 (476)
+++..+..+...+..-|+.++..+.+++++.+||.|..||++++.|++.+|+||.+.+.+|+++||.+-++..++..||+
T Consensus 6 lnpkAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd 85 (520)
T KOG0359|consen 6 LNPKAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDD 85 (520)
T ss_pred CCcHHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhc
Confidence 45556667777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
..||||||+|+|+++|+++|..++..|+||..|++||+.|.+.++++|+....+++ ++.|..+++|++++|+.
T Consensus 86 ~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-------~~~L~~va~tsl~Tkv~ 158 (520)
T KOG0359|consen 86 ITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-------RETLKDVARTSLRTKVH 158 (520)
T ss_pred ccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-------HHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999999999996666554 68999999999999999
Q ss_pred CcchHHHHHHHHHHHhhcCCCC---CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecc
Q 011829 172 GGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~---~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le 248 (476)
....+.++.++++|+..+.... |...+.+++....+..|+.+++|+++||+..||.| |++++|+.||++|.+||
T Consensus 159 ~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdm---p~~~e~a~iL~~NvSLE 235 (520)
T KOG0359|consen 159 AELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDM---PRRVEDAYILICNVSLE 235 (520)
T ss_pred HHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCccc---ccchhceEEEEeecccc
Confidence 9999999999999999987422 78889999999899999999999999999999875 89999999999999999
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCe----EEEecccccHHHHHHHHhcCcccccCCCHHHHHH
Q 011829 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK----VVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (476)
Q Consensus 249 ~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~----lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~ 324 (476)
|++++.|+.|-|++.+|.+.+...|++++.+.+++|++.+-. +||+|+||||..++.|+++||++++|.+++.|||
T Consensus 236 YEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmER 315 (520)
T KOG0359|consen 236 YEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMER 315 (520)
T ss_pred ccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999988743 7789999999999999999999999999999999
Q ss_pred HHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 011829 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (476)
Q Consensus 325 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~ 404 (476)
+..+||+..+++++|++++.+|+|+.|++.++|+++|+|+++|+++.+|||+++||+++.+.++|++++|+|++++++++
T Consensus 316 L~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~ 395 (520)
T KOG0359|consen 316 LVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLE 395 (520)
T ss_pred HHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 405 NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 405 ~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++.++||+|++|.+++.+|+..-++.+++.++++++|++||..+|++|+.|+|+|+.+.+.+|...|..+
T Consensus 396 d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~ 465 (520)
T KOG0359|consen 396 DKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT 465 (520)
T ss_pred hcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh
Confidence 9999999999999999999987788999999999999999999999999999999999999998887654
No 39
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2e-77 Score=627.99 Aligned_cols=410 Identities=21% Similarity=0.331 Sum_probs=371.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhccc----ChhhHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~----hP~~~ll~~~~~~~~~ 91 (476)
.+..+|.+++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++ ||+++|+++++++||+
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~ 83 (546)
T PRK14104 4 KEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSAD 83 (546)
T ss_pred ceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcc
Confidence 356788999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+|+||++||+++.+++++|+||..|++||+.|++.+++.|+++++|++. .+.+.++++++.+
T Consensus 84 e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~------~~~l~~va~~s~~---- 153 (546)
T PRK14104 84 AAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTS------NDEIAQVGTISAN---- 153 (546)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHHHHhc----
Confidence 999999999999999999999999999999999999999999999999999999863 2568999998854
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCc-ccceEEEeEEEeeccCCcccc----CCCceecCceEEEEeee
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIE 246 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~-~ds~li~G~vl~~~~~~~~~~----~~~~~~~~~~Ill~~~~ 246 (476)
+++.+++++++|+..++.+ +.|.+.. +++. .++++++|++|+++|.+|+|. .++.++++|+|++++..
T Consensus 154 --~d~~i~~lv~~Av~~vg~~---g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~ 226 (546)
T PRK14104 154 --GDAEIGKFLADAMKKVGNE---GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK 226 (546)
T ss_pred --CchHHHHHHHHHHHHhccC---CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh
Confidence 4588999999999999864 3444443 3455 479999999999999999883 45678999999999844
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHh------cCcccccCCC--
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFAD------RDIFCAGRVA-- 318 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~------~~I~~i~~v~-- 318 (476)
+ +++++ +.++++.+.+.+++|||++++|++.++++|.. .+|+++++.+
T Consensus 227 i-------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g 282 (546)
T PRK14104 227 L-------------SSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFG 282 (546)
T ss_pred h-------------cCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCC
Confidence 3 34433 56889999999999999999999999999984 5788886665
Q ss_pred ---HHHHHHHHHHhCCeeccc-----ccCCCcccCcccccEEEEEECCeEEEEEEcCCCC--------------------
Q 011829 319 ---EEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-------------------- 370 (476)
Q Consensus 319 ---~~~le~Ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------- 370 (476)
+++++|||.+|||+++++ ++++++.++|+|..+++ ++++++++.+|.++
T Consensus 283 ~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~ 359 (546)
T PRK14104 283 DRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSD 359 (546)
T ss_pred cchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCH
Confidence 899999999999999999 89999899999999885 77899999998764
Q ss_pred ---------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHH
Q 011829 371 ---------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQ 435 (476)
Q Consensus 371 ---------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~ 435 (476)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..++++|
T Consensus 360 ~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~ 437 (546)
T PRK14104 360 YDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQK 437 (546)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHH
Confidence 899999999999999999999999999999999998 99999999999999999874 4678999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 011829 436 FFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH 471 (476)
Q Consensus 436 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h 471 (476)
+++++|++||+.||++|++|||+|+.+++.+|+..|
T Consensus 438 ~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~ 473 (546)
T PRK14104 438 TGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE 473 (546)
T ss_pred HHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999998765
No 40
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.6e-76 Score=624.34 Aligned_cols=413 Identities=22% Similarity=0.368 Sum_probs=367.8
Q ss_pred ccccccH--HHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChh----hHHHHHHHHhc
Q 011829 16 TDTSQGK--AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQ 89 (476)
Q Consensus 16 ~~~~~~~--~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----~~ll~~~~~~~ 89 (476)
.+..+|. ++|+..+.+|+.|+++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+++++++|
T Consensus 57 k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~q 136 (600)
T PLN03167 57 KELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKT 136 (600)
T ss_pred ceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhh
Confidence 4567777 69999999999999999999999999999999999999999999999999999995 99999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccC
Q 011829 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (476)
Q Consensus 90 ~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK 169 (476)
++++||||||++||+++||+++.++++.|+||..|++||+.|.+.+++.|++++++++ + +.|.++|+++++
T Consensus 137 d~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-----~~L~~vA~tS~~-- 207 (600)
T PLN03167 137 NDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-----SELADVAAVSAG-- 207 (600)
T ss_pred hhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-----HHHHHHHHHhcc--
Confidence 9999999999999999999999999999999999999999999999999999998875 2 469999999854
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccc-eEEEeEEEeeccCCccc----cCCCceecCceEEEEe
Q 011829 170 LIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLN 244 (476)
Q Consensus 170 ~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds-~li~G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~ 244 (476)
+++.|++|+++|+.+++++ +.|.+ .+|++..|+ ++++|++|+++|.+||| ++|+++++||+|+++|
T Consensus 208 ----~~~~i~~liaeAv~~Vg~~---g~i~v--~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d 278 (600)
T PLN03167 208 ----NNYEVGNMIAEAMSKVGRK---GVVTL--EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVD 278 (600)
T ss_pred ----CcHHHHHHHHHHHHHhccC---CcEEe--ccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEc
Confidence 6789999999999999754 22222 368888887 89999999999999988 3578899999999999
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHH------hcCcccccCCC
Q 011829 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA------DRDIFCAGRVA 318 (476)
Q Consensus 245 ~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~------~~~I~~i~~v~ 318 (476)
+.+ ++.+++. ++++.+.+.++++||++++|++.++++|. ..+|.++++.+
T Consensus 279 ~~i-------------~~~~~l~-----------~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~ 334 (600)
T PLN03167 279 KKI-------------TNARDLI-----------GILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPG 334 (600)
T ss_pred ccc-------------CCHHHHH-----------HHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEccc
Confidence 854 4555544 44567778899999999999999999998 67899998885
Q ss_pred -----HHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEE-----ECC--------eEEEEEEcCC-------
Q 011829 319 -----EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQ-----VGN--------ERFNIFSGCP------- 368 (476)
Q Consensus 319 -----~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~-----~~~--------~~~~~~~~~~------- 368 (476)
+++|+|||.+||+++++ ++++++.+++|+|+.|++.+ +|+ +++.+|+++.
T Consensus 335 ~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~ 414 (600)
T PLN03167 335 FGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDY 414 (600)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHH
Confidence 88999999999999999 68888888999999999986 665 3677776653
Q ss_pred -----C------CceEEEE-ecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHH
Q 011829 369 -----S------GRTATIV-LRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (476)
Q Consensus 369 -----~------~~~~TIl-l~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~ 436 (476)
+ +..+|++ |||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.+.++++|+
T Consensus 415 ~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~ 493 (600)
T PLN03167 415 EKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQK 493 (600)
T ss_pred HHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHH
Confidence 1 1145555 999999999999999999999999999999 99999999999999999988888888886
Q ss_pred H-HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 011829 437 F-INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH 471 (476)
Q Consensus 437 ~-~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h 471 (476)
+ +++|++||+.||++|++|||+|+.+++++|++.+
T Consensus 494 ~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~ 529 (600)
T PLN03167 494 VGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND 529 (600)
T ss_pred HHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC
Confidence 4 9999999999999999999999999999998544
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-64 Score=468.13 Aligned_cols=331 Identities=32% Similarity=0.585 Sum_probs=312.1
Q ss_pred Cchhhhhccccc--cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHH
Q 011829 5 MQPQIILLKEGT--DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKIL 82 (476)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll 82 (476)
+.+|.-+++++. ....|.++.++|+.+.++++++++||+||+|++|+++.+.|++++|||| .|++++++
T Consensus 8 ~~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLm 78 (400)
T KOG0357|consen 8 FGRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLI 78 (400)
T ss_pred hcCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHH
Confidence 556666776664 5679999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHH
Q 011829 83 VDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCA 162 (476)
Q Consensus 83 ~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va 162 (476)
...+..|+.++|||||.+++|++.+++++.+++.+|+||..|.+||..+...+++.|++++.+++
T Consensus 79 v~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e--------------- 143 (400)
T KOG0357|consen 79 VILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE--------------- 143 (400)
T ss_pred HHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc---------------
Confidence 99999999999999999999999999999999999999999999999999999887766543211
Q ss_pred HHHhccCcCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEE
Q 011829 163 ATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (476)
Q Consensus 163 ~tsl~sK~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill 242 (476)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHH
Q 011829 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (476)
Q Consensus 243 ~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~l 322 (476)
+...++++++.|+++++|||++||.+.++|.+++..+++||.-.++
T Consensus 144 ----------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEi 189 (400)
T KOG0357|consen 144 ----------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEI 189 (400)
T ss_pred ----------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcce
Confidence 2456888999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCcccCcccccEEEEEEC--CeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 011829 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVG--NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (476)
Q Consensus 323 e~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~--~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 400 (476)
|.||.+||++|++++++++++.+|+|+.|++..|| .+++..+++|++++.+||++||+++.+++|.||++|||||++|
T Consensus 190 EliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvir 269 (400)
T KOG0357|consen 190 ELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIR 269 (400)
T ss_pred EEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999998 5799999999999999999999999999999999999999999
Q ss_pred HHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 401 RATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 401 ~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
+++++.|+|+|||++|+.||-++.+.+.++++.+||++++||+||++||..|++|||++|++.++++++.|..
T Consensus 270 nlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~ 342 (400)
T KOG0357|consen 270 NLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVK 342 (400)
T ss_pred HHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998754
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-51 Score=402.45 Aligned_cols=408 Identities=24% Similarity=0.336 Sum_probs=355.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChh----hHHHHHHHHhcc
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQD 90 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----~~ll~~~~~~~~ 90 (476)
-.+..+|.++|...++++..|+++|..|+||+||+++|.+..|.|.|||||.|+.+++.+.++. ++++++.+.+.+
T Consensus 16 ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN 95 (550)
T KOG0356|consen 16 AKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTN 95 (550)
T ss_pred ccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhcc
Confidence 3467899999999999999999999999999999999999999999999999999999998885 999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCc
Q 011829 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (476)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~ 170 (476)
+..||||||+++|++++..++.+-+.+|.+|..|.+|...|.+...+.|++++++|... +.+.++|.+|
T Consensus 96 ~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~------eeIaqVAtiS----- 164 (550)
T KOG0356|consen 96 EEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTP------EEIAQVATIS----- 164 (550)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCH------HHHHHHHhhh-----
Confidence 99999999999999999999999999999999999999999999999999999999864 6899999977
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCCccceeeeee-CCCCccc-ceEEEeEEEeeccCCccccC----CCceecCceEEEEe
Q 011829 171 IGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKV-PGGTMRD-SFLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLN 244 (476)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i-~g~~~~d-s~li~G~vl~~~~~~~~~~~----~~~~~~~~~Ill~~ 244 (476)
++++....+++.+|+.+++.. .|+.+ .|.+..| -++++|+-|+++|.+|||.+ +..++++|++++.+
T Consensus 165 -AngD~~ig~li~~a~~kvG~~------GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~ 237 (550)
T KOG0356|consen 165 -ANGDKEIGNLISDAMKKVGRK------GVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSE 237 (550)
T ss_pred -cCCcHHHHHHHHHHHHHhCcC------CeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhh
Confidence 678999999999999999987 56665 4556655 67999999999999999954 33579999999976
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcC----c-------cc
Q 011829 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD----I-------FC 313 (476)
Q Consensus 245 ~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~----I-------~~ 313 (476)
..+ +++++ +.+.++.-.+....+++....++..++..|--++ + .-
T Consensus 238 kki-------------~~v~~-----------ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapg 293 (550)
T KOG0356|consen 238 KKI-------------SSVQS-----------IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPG 293 (550)
T ss_pred hhh-------------hHHHH-----------HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCC
Confidence 553 34444 3444555555566799999999999888776332 2 23
Q ss_pred ccCCCHHHHHHHHHHhCCeeccc------ccCCCcccCcccccEEEEE--------------------------------
Q 011829 314 AGRVAEEDLLRVAAATGGTVQTS------VNNVVDEVLGTCEHFEERQ-------------------------------- 355 (476)
Q Consensus 314 i~~v~~~~le~Ia~~tGa~ii~~------l~~l~~~~lG~~~~v~~~~-------------------------------- 355 (476)
|++-++..+.+|+.+||+.++.. +++.+..++|.|..+....
T Consensus 294 fGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ 373 (550)
T KOG0356|consen 294 FGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSD 373 (550)
T ss_pred CcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 68888899999999999999863 5566778999999887542
Q ss_pred ----ECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcC
Q 011829 356 ----VGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIA 431 (476)
Q Consensus 356 ----~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~ 431 (476)
..++|...|+|. .++|.++|.++.+++|.+.+++|||+++++++++| +|||||++.++++..|.+....-+
T Consensus 374 ye~ekl~er~a~ls~g----vavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~ 448 (550)
T KOG0356|consen 374 YEKEKLNERLAKLSGG----VAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNN 448 (550)
T ss_pred hhHhHHHHHHHHhcCC----eEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccc
Confidence 123456666665 89999999999999999999999999999999999 999999999999999998655345
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 011829 432 GKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQ 469 (476)
Q Consensus 432 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~ 469 (476)
..++.+++++.+||..|..+++.|||.|+..++.|++.
T Consensus 449 ~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~ 486 (550)
T KOG0356|consen 449 FDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN 486 (550)
T ss_pred hHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh
Confidence 67788899999999999999999999999999999983
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=4.7e-41 Score=322.31 Aligned_cols=228 Identities=25% Similarity=0.399 Sum_probs=210.6
Q ss_pred CcchHHHHHHHHHHHhhcCCC-----C-Cc-cceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEe
Q 011829 172 GGEKEFFASMVVDAVGAIGDG-----D-RL-NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~-----~-~~-~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~ 244 (476)
+.|.++|++++++|+..+.+. . |. ++|+|++++|+++.||++++|+++++++.++. ||++++||||++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~---m~~~i~n~kIlll~ 93 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR---MPSKIKNPRILLLQ 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCcc---CCcccCCCcEEEEe
Confidence 458899999999999998632 1 44 36999999999999999999999999998865 58999999999999
Q ss_pred eeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHH
Q 011829 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (476)
Q Consensus 245 ~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~ 324 (476)
++|++++++ +++.+++++.+.|++++++++++|.+.|++|||++++|++.+++||.++||++++++++++|+|
T Consensus 94 ~~Le~~~~~-------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~r 166 (261)
T cd03334 94 GPLEYQRVE-------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLER 166 (261)
T ss_pred eeecccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHH
Confidence 999998876 3578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccc-cCCCcccCcccccEEEEEECC-----eEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHH
Q 011829 325 VAAATGGTVQTSV-NNVVDEVLGTCEHFEERQVGN-----ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (476)
Q Consensus 325 Ia~~tGa~ii~~l-~~l~~~~lG~~~~v~~~~~~~-----~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~ 398 (476)
||++|||++++++ ++++++.+|+|+.|++.++|+ ++|++|+||+.++.+||+|||+|+..++|++|+++||+++
T Consensus 167 Ia~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 167 ISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999994 588999999999999999996 6999999999999999999999999999999999999999
Q ss_pred HHHHHhCCccc
Q 011829 399 VRRATKNSTVV 409 (476)
Q Consensus 399 ~~~~~~~~~vv 409 (476)
++++..+..++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99998877543
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=6.9e-38 Score=292.72 Aligned_cols=205 Identities=43% Similarity=0.692 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhccCcCCcchHHHHHHHHHHHhhcCCCC---CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCC
Q 011829 156 RLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP 232 (476)
Q Consensus 156 ~~l~~va~tsl~sK~~~~~~~~l~~lv~~ai~~~~~~~---~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~ 232 (476)
+.|.++++|+++||+ ++|.+.+++++++|+..++++. +.++|+|++++||+++||++++|++|++++.+++| |
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m---~ 77 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM---P 77 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC---C
Confidence 468999999999999 9999999999999999998632 57899999999999999999999999999999875 8
Q ss_pred ceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcc
Q 011829 233 KKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIF 312 (476)
Q Consensus 233 ~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~ 312 (476)
+.++||+|++++++|++ ||+++++|++.++++|.++||+
T Consensus 78 ~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~ 116 (209)
T cd03333 78 KRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIM 116 (209)
T ss_pred eEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCE
Confidence 99999999999999976 9999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHH
Q 011829 313 CAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSL 392 (476)
Q Consensus 313 ~i~~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i 392 (476)
+++++++++|+|||++|||++++++++++++.+|+|+.|++..+++++|++|++|+.+..+||+|||+|+.+++|+||++
T Consensus 117 ~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l 196 (209)
T cd03333 117 AVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSL 196 (209)
T ss_pred EEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 011829 393 HDAIMIVRRATKN 405 (476)
Q Consensus 393 ~dal~~~~~~~~~ 405 (476)
+||++++++++++
T Consensus 197 ~dal~~~~~~~~~ 209 (209)
T cd03333 197 HDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.91 E-value=4.1e-24 Score=232.28 Aligned_cols=232 Identities=22% Similarity=0.345 Sum_probs=207.0
Q ss_pred cchHHHHHHHHHHHhhcCCCC-------CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEee
Q 011829 173 GEKEFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (476)
Q Consensus 173 ~~~~~l~~lv~~ai~~~~~~~-------~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~ 245 (476)
.|.+.+..|+.+|...+.++- ..++|+|++|.+|+..||++++|+++.+.+++.. |..++++|||+++.+
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~---M~~~~e~prilll~g 408 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKR---MATKYENPRILLLGG 408 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhh---hhhhccCCceEEEec
Confidence 588899999999999887642 3799999999999999999999999999999865 578999999999999
Q ss_pred eccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHH
Q 011829 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (476)
Q Consensus 246 ~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~I 325 (476)
+|+|.+... .+..++.++++|.++++.++.+|...+++++++.++|++.|+++|...||.++-++++.-|+||
T Consensus 409 ~leyqrisn-------~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRI 481 (1598)
T KOG0230|consen 409 PLEYQRISN-------QLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERI 481 (1598)
T ss_pred chhhhhhhc-------cccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHH
Confidence 999987542 3456677777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccccCCCcccCcccccEEEEEEC-----CeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 011829 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVG-----NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (476)
Q Consensus 326 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~-----~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 400 (476)
+++|||.|++++|.++...+|+|+.|++..+. .+.+++|+||++..+|||+|||....++.++|+++.-++.++.
T Consensus 482 sR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay 561 (1598)
T KOG0230|consen 482 SRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAY 561 (1598)
T ss_pred HHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887665 4579999999999999999999999999999999999999999
Q ss_pred HHHhCCcccccCcc
Q 011829 401 RATKNSTVVAGGGA 414 (476)
Q Consensus 401 ~~~~~~~vv~GGG~ 414 (476)
++.-+-.++.--|+
T Consensus 562 ~l~LE~SflaDe~a 575 (1598)
T KOG0230|consen 562 HLALETSFLADEGA 575 (1598)
T ss_pred HHHHhhhhhhccCC
Confidence 87544434444444
No 46
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=46.88 E-value=33 Score=27.29 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCC
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~ 318 (476)
...+.+...++++|++. ++.+-+...|.++||.++....
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 34555666899999996 6999999999999999986665
No 47
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=42.49 E-value=75 Score=26.68 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCH
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~ 319 (476)
...+.+++.|+++|++. .+.+-+...|...||-+..-.+.
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~ 95 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGG 95 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCC
Confidence 45777889999999988 67999999999999998876663
No 48
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=40.78 E-value=51 Score=25.62 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=32.0
Q ss_pred HHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHH
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le 323 (476)
..+.+...+++++|+. ++.+.+...|.++||.++.. ...+++
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~-~~~~i~ 86 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQG-AGGDIE 86 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEES-TSSBHH
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEc-CCCCHH
Confidence 3455566889999887 57999999999999999886 333333
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=39.31 E-value=1e+02 Score=24.02 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCeEEEecccccHHHH----HHHHhcCcccccCCCHHHHHHHH
Q 011829 278 YDKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVA 326 (476)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~~~----~~l~~~~I~~i~~v~~~~le~Ia 326 (476)
++-.+.+.+-.+.+|+..+++++... .+|.++||.++.--++.+|.+.|
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 45566666667889999999997543 46678999998877777776643
No 50
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=35.66 E-value=71 Score=25.16 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.4
Q ss_pred HHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCC
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~ 318 (476)
..+.+...++++|++. ++.+-+...|.+.||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 3455667899999998 4999999999999999986655
No 51
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=33.97 E-value=91 Score=27.75 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=35.9
Q ss_pred HHHHHHcCCeEEEecccccHHHHHHHHhcCcccc--cCCC-H----HHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA--GRVA-E----EDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i--~~v~-~----~~le~Ia~~tGa~ 332 (476)
++.|.+.+|+|||......+...+.|.+.||.++ .... . +.++.+++++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 5778889999999876555556678899999543 2222 2 3466777777753
No 52
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.50 E-value=98 Score=28.87 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=37.2
Q ss_pred HHHHHHcCCeEEEecccccHH-HHHHHHhcCcccccC--CC----HHHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIGDL-ATQYFADRDIFCAGR--VA----EEDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~-~~~~l~~~~I~~i~~--v~----~~~le~Ia~~tGa~ 332 (476)
++.|.+.+|+|||.....++. ..+.|.+.||.++-. -. .+.++.|+.++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 678889999999987655443 478888999865421 12 33478888888875
No 53
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=29.33 E-value=98 Score=31.22 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=37.8
Q ss_pred HHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCC---CH----HHHHHHHHHhCCe
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV---AE----EDLLRVAAATGGT 332 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v---~~----~~le~Ia~~tGa~ 332 (476)
-+++|+..+|+|||.....++...+.|.+.||.++..- +. +.++.+.+++|-.
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 36888999999999875555556788889999875321 22 3456777888764
No 54
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=28.77 E-value=3.5e+02 Score=23.68 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCC
Q 011829 379 GGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGF 458 (476)
Q Consensus 379 G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~ 458 (476)
.|.+..-.+++.-...-...++.-.+.|.++|- +...++++ ..++++...|+.+|-+|-+.||+
T Consensus 60 ~p~~m~p~dRK~w~qsE~eRlk~e~e~g~Lipa--------~eV~~~~s--------~~~Kav~q~LetlPD~LERd~gL 123 (152)
T PF07278_consen 60 DPDDMTPKDRKAWWQSENERLKFEKETGQLIPA--------EEVRREMS--------EMAKAVVQVLETLPDILERDAGL 123 (152)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHcccCcH--------HHHHHHHH--------HHHHHHHHHHHHhhHHHHhcCCC
Confidence 344445557777777677777777777777753 22334443 25788999999999999999999
Q ss_pred CHHHH
Q 011829 459 DATDV 463 (476)
Q Consensus 459 d~~~~ 463 (476)
.|..+
T Consensus 124 ~p~~v 128 (152)
T PF07278_consen 124 PPEQV 128 (152)
T ss_pred CHHHH
Confidence 98654
No 55
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=28.32 E-value=2e+02 Score=22.32 Aligned_cols=50 Identities=8% Similarity=-0.023 Sum_probs=34.1
Q ss_pred HHHHHHHcCCeEEEecccccHHH----HHHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLA----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~----~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
.++.+.+-++.+||...+.++.. .++|..++|.+...-++ +.|.+++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCc
Confidence 34556666789999998888744 34566789988655544 4556677654
No 56
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=27.73 E-value=1.4e+02 Score=29.71 Aligned_cols=56 Identities=14% Similarity=0.000 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCeec
Q 011829 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (476)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ii 334 (476)
.++++.+.+.++.+|++..+.... .+.|.+.||.++..+..-..-+-+.-.|++.+
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 356777888899999998877665 48889999999887777665566677777655
No 57
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.76 E-value=2.1e+02 Score=22.11 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCeEEEecccccHHH----HHHHHhcCcccccCCCHHHHHHHHHHhCCee
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLA----TQYFADRDIFCAGRVAEEDLLRVAAATGGTV 333 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~----~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~i 333 (476)
+..+.|.+-++.+|+...+.++.. .++|.+++|.++.--++ +.|..++|-++
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~~ 73 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM---KKLGKACGIEV 73 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCCc
Confidence 345556666788999999988744 34567889888665544 44556676543
No 58
>PRK07283 hypothetical protein; Provisional
Probab=26.68 E-value=2e+02 Score=22.94 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHHHHcCCeEEEecccccHHHH----HHHHhcCcccccCCCHHHHHHHHHHhCC
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGG 331 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~----~~l~~~~I~~i~~v~~~~le~Ia~~tGa 331 (476)
..+.+.+-++.+||...+.++... +.|...+|.++..... +.|..++|-
T Consensus 26 v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~---~eLG~a~Gk 78 (98)
T PRK07283 26 VVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFST---LELSAAVGK 78 (98)
T ss_pred HHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 345555667889999999988666 5666779988766655 446667774
No 59
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=26.35 E-value=1e+02 Score=29.75 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=38.8
Q ss_pred HHHHHHcCCeEEEecccccHHHHHHHHhcCccccc--CCC----HHHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG--RVA----EEDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~--~v~----~~~le~Ia~~tGa~ 332 (476)
++.|...+|+|||.....++...+.|.+.||.++- .-. .+.++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 67888999999999877777777888999987642 111 22477888888865
No 60
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=26.10 E-value=36 Score=32.88 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=34.6
Q ss_pred ECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcch
Q 011829 356 VGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAI 415 (476)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~ 415 (476)
+|+..++++....+...|.|+-+..--.--.-.|++ -|++++|-+.+.|.++|||-.+
T Consensus 47 IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDR--vAl~iir~Aee~GkL~~gg~v~ 104 (391)
T KOG1481|consen 47 IGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDR--VALYIIRTAEEKGKLVRGGTVV 104 (391)
T ss_pred hCCCceEEeeccccccccchhhhhhccCCCCChhhh--hHHHHHHHHHHcCCcccCceEE
Confidence 466666776655555566665432111001122333 2899999999999999997333
No 61
>PF12846 AAA_10: AAA-like domain
Probab=26.08 E-value=1.5e+02 Score=28.22 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCeEEEecccccHHH-----HHHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 276 IIYDKLDKCVQSGAKVVLSRLAIGDLA-----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 276 ~l~~~v~~i~~~~~~lvi~~~~i~~~~-----~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
.+.+++...-+.++.+++....+++.. ...+...+..++.+....+.+.+++..|.+
T Consensus 241 ~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 241 FLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 366777777888999999999999888 789999999999999999888899988754
No 62
>PRK06683 hypothetical protein; Provisional
Probab=25.68 E-value=2.1e+02 Score=22.06 Aligned_cols=51 Identities=14% Similarity=-0.004 Sum_probs=35.4
Q ss_pred HHHHHHHcCCeEEEecccccHHHH----HHHHhcCcccccCCCHHHHHHHHHHhCCee
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGGTV 333 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~----~~l~~~~I~~i~~v~~~~le~Ia~~tGa~i 333 (476)
.++.+.+-++.+||...+.++... ++|..++|.++..-+. +.|..++|-++
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~---~eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV---RKLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH---HHHHHHhCCcc
Confidence 345566667899999999987544 4567889988765544 55666777654
No 63
>PRK07714 hypothetical protein; Provisional
Probab=25.66 E-value=2.3e+02 Score=22.67 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCeEEEecccccHHHH----HHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~----~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
...+.+.+-.+.+||...+.++... ++|..++|.++...++++ |..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~e---LG~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQ---LGHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHH---HHHHhCCC
Confidence 3445556667889999988887443 345677888877666644 45566654
No 64
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=25.18 E-value=1.9e+02 Score=28.58 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCeec
Q 011829 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (476)
Q Consensus 278 ~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ii 334 (476)
.++++.+.+.++++|.+..+..+.....+.+.|+.++..+..-+.-+-+.-.|+..+
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 345677778899998887776666778888889888777666655555666677665
No 65
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=24.09 E-value=80 Score=29.95 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=25.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 011829 373 ATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (476)
Q Consensus 373 ~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (476)
.||+|+| ++..++++++.|+|-.++++-.
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~aVl 149 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYAVL 149 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhheee
Confidence 4999999 6889999999999999988653
No 66
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=23.81 E-value=79 Score=32.89 Aligned_cols=39 Identities=33% Similarity=0.504 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhh
Q 011829 390 RSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRA 429 (476)
Q Consensus 390 ~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~ 429 (476)
|.+.+|+..+|++ ++|-+|.|||.-+-.....|+.|++.
T Consensus 217 ~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 217 RELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 4566777778776 55779999999999999999988865
No 67
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=22.06 E-value=80 Score=29.90 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHH
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~ 321 (476)
+.+.|....|+.+|++...-.+.+.++..+.||+.++.++...
T Consensus 183 emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~r 225 (237)
T TIGR00129 183 EMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNGR 225 (237)
T ss_pred HHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCCc
Confidence 5688888999999999999999999999999999887666543
No 68
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=20.91 E-value=3.1e+02 Score=21.93 Aligned_cols=51 Identities=12% Similarity=0.014 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCeEEEecccccHH----HHHHHHhcCcccccC-CCHHHHHHHHHHhCCe
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDL----ATQYFADRDIFCAGR-VAEEDLLRVAAATGGT 332 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~----~~~~l~~~~I~~i~~-v~~~~le~Ia~~tGa~ 332 (476)
...+.+.+.++.+||...+.++. ..++|.+++|.++.. -++ +.|.+++|-.
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk---~eLG~a~Gk~ 78 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSS---VELGTLCGKP 78 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCH---HHHHHHhCCC
Confidence 34556666678899998888763 444667889987664 355 4455577744
No 69
>smart00574 POX domain associated with HOX domains.
Probab=20.29 E-value=2.8e+02 Score=23.87 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHh
Q 011829 384 FIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR 428 (476)
Q Consensus 384 ~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~ 428 (476)
.++|++++..-...-++.++..=..|+|+|++-...+-+|+-.+.
T Consensus 85 mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 85 MLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 456666665555444444433322689999988887777775443
No 70
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=20.12 E-value=90 Score=30.04 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHH
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~ 320 (476)
+.+.|....|+.+|++...-.+.+.++..+.||+.++.++..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 568888899999999999989999999999999988766543
Done!