Query 011829
Match_columns 476
No_of_seqs 141 out of 1586
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 16:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyg_H T-complex protein 1 sub 100.0 2E-105 5E-110 837.5 55.2 462 13-474 1-462 (515)
2 3p9d_G T-complex protein 1 sub 100.0 6E-107 2E-111 853.3 41.3 469 4-473 5-474 (550)
3 1q3q_A Thermosome alpha subuni 100.0 2E-105 7E-110 842.1 52.7 466 1-473 1-472 (548)
4 3ko1_A Chaperonin; 9-fold symm 100.0 2E-105 7E-110 841.3 48.9 464 4-474 11-480 (553)
5 3ruv_A Chaperonin, CPN; double 100.0 1E-104 5E-109 835.2 52.8 458 7-472 4-464 (543)
6 1a6d_B Thermosome (beta subuni 100.0 1E-104 4E-109 836.4 50.3 461 6-473 4-470 (543)
7 3iyg_A T-complex protein 1 sub 100.0 1E-103 3E-108 827.0 54.2 453 15-474 2-468 (529)
8 1a6d_A Thermosome (alpha subun 100.0 3E-104 1E-108 832.5 49.6 457 8-473 7-469 (545)
9 3iyg_G T-complex protein 1 sub 100.0 2E-103 7E-108 822.1 54.2 452 15-473 1-460 (515)
10 3iyg_B T-complex protein 1 sub 100.0 9E-103 3E-107 816.9 54.3 455 15-474 2-459 (513)
11 3p9d_A T-complex protein 1 sub 100.0 1E-103 4E-108 830.3 43.1 466 1-473 1-483 (559)
12 3iyg_E T-complex protein 1 sub 100.0 1E-101 5E-106 809.2 53.4 454 15-473 2-461 (515)
13 3iyg_Z T-complex protein 1 sub 100.0 6E-102 2E-106 810.6 49.2 450 15-473 2-464 (517)
14 3p9d_D T-complex protein 1 sub 100.0 5E-103 2E-107 820.8 40.1 459 10-474 6-476 (528)
15 3iyg_D T-complex protein 1 sub 100.0 2E-101 7E-106 807.5 52.3 452 15-474 3-466 (518)
16 3p9d_C T-complex protein 1 sub 100.0 9E-103 3E-107 823.0 41.8 463 5-474 1-534 (590)
17 3p9d_E T-complex protein 1 sub 100.0 3E-102 1E-106 819.3 45.7 462 8-472 28-503 (562)
18 3p9d_H T-complex protein 1 sub 100.0 4E-102 1E-106 819.8 45.7 460 4-473 5-484 (568)
19 3iyg_Q T-complex protein 1 sub 100.0 1.5E-99 5E-104 793.3 53.4 450 14-473 1-457 (512)
20 3p9d_B T-complex protein 1 sub 100.0 3E-101 9E-106 809.2 37.2 459 10-473 4-465 (527)
21 3p9d_F T-complex protein 1 sub 100.0 2E-101 7E-106 812.3 34.0 457 11-472 5-478 (546)
22 3aq1_B Thermosome subunit; gro 100.0 2.1E-93 7.2E-98 744.1 37.2 416 51-473 1-423 (500)
23 1we3_A CPN60(groel); chaperoni 100.0 4.2E-86 1.5E-90 692.5 42.1 411 16-472 3-473 (543)
24 1kp8_A Groel protein; chaperon 100.0 1.2E-85 4E-90 688.1 39.9 409 16-470 3-471 (547)
25 1iok_A Chaperonin 60; chaperon 100.0 1.3E-86 4.6E-91 695.8 32.2 411 16-472 4-474 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 5.4E-85 1.9E-89 681.2 29.3 408 16-470 3-469 (546)
27 1gml_A T-complex protein 1 sub 100.0 8.5E-39 2.9E-43 287.9 18.0 173 208-383 1-174 (178)
28 1ass_A Thermosome; chaperonin, 100.0 9.9E-34 3.4E-38 249.7 13.3 154 214-370 1-154 (159)
29 3m6c_A 60 kDa chaperonin 1; ch 99.3 1.8E-11 6.3E-16 107.7 11.4 147 211-397 2-169 (194)
30 3osx_A 60 kDa chaperonin; alph 99.2 8.8E-11 3E-15 103.6 13.0 143 215-397 13-176 (201)
31 1srv_A Protein (groel (HSP60 c 99.2 2.8E-11 9.6E-16 101.6 9.1 114 216-353 1-134 (145)
32 1o13_A Probable NIFB protein; 50.8 26 0.0009 28.7 5.7 52 280-332 68-119 (136)
33 2yx6_A Hypothetical protein PH 50.2 27 0.00094 27.7 5.6 53 279-332 54-106 (121)
34 2wfb_A Putative uncharacterize 47.0 33 0.0011 27.2 5.6 51 280-331 59-110 (120)
35 1eo1_A Hypothetical protein MT 43.8 35 0.0012 27.2 5.3 52 280-332 57-108 (124)
36 2re2_A Uncharacterized protein 34.4 61 0.0021 26.4 5.4 52 279-332 70-121 (136)
37 1rdu_A Conserved hypothetical 33.0 36 0.0012 26.8 3.6 51 281-332 55-105 (116)
38 3psh_A Protein HI_1472; substr 29.0 65 0.0022 30.2 5.4 52 281-332 77-154 (326)
39 2wi8_A Iron-uptake system-bind 26.6 97 0.0033 28.8 6.1 52 281-332 89-144 (311)
40 2q8p_A Iron-regulated surface 26.5 66 0.0023 28.9 4.8 52 281-332 53-110 (260)
41 3v7e_A Ribosome-associated pro 26.1 92 0.0031 22.8 4.6 50 279-331 18-71 (82)
42 2r79_A Periplasmic binding pro 26.0 1.1E+02 0.0037 27.9 6.3 52 281-332 52-111 (283)
43 2lbw_A H/ACA ribonucleoprotein 24.7 1.4E+02 0.0049 23.6 5.9 49 279-330 27-80 (121)
44 2etv_A Iron(III) ABC transport 24.4 79 0.0027 30.0 5.1 52 281-332 89-151 (346)
45 3fst_A 5,10-methylenetetrahydr 23.8 2.4E+02 0.0081 26.4 8.1 49 286-334 174-232 (304)
46 2xzm_U Ribosomal protein L7AE 21.7 1.4E+02 0.0046 24.1 5.2 50 279-331 31-85 (126)
47 3md9_A Hemin-binding periplasm 20.4 1.1E+02 0.0037 27.3 4.9 52 281-332 52-111 (255)
48 2r7a_A Bacterial heme binding 20.0 1E+02 0.0036 27.5 4.7 52 281-332 52-112 (256)
No 1
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.5e-105 Score=837.45 Aligned_cols=462 Identities=68% Similarity=1.056 Sum_probs=445.8
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccc
Q 011829 13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (476)
Q Consensus 13 ~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~ 92 (476)
++++++.+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||++
T Consensus 1 ~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (515)
T 3iyg_H 1 KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAE 80 (515)
T ss_pred CCCccccCcHHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhce
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCC
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 172 (476)
+||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|+++++|++..+..+.++.|.++|+|+++||+++
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s 160 (515)
T 3iyg_H 81 VGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLIS 160 (515)
T ss_pred eCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999874442223678999999999999999
Q ss_pred cchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecccccc
Q 011829 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (476)
Q Consensus 173 ~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~ 252 (476)
+++++|++++++|+.+++.+.|.++|+|+++.|++..||++++|++|+++|.||+|.++|++++||+|++++++|+++++
T Consensus 161 ~~~~~i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~Le~~k~ 240 (515)
T 3iyg_H 161 QQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240 (515)
T ss_pred ccHHHHHHHHHHHHHHhcccCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEEccccccccc
Confidence 99999999999999999753377899999999999999999999999999999999888999999999999999999999
Q ss_pred ccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 253 ~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
+.++++.++++++++++.+.|+++++++++++++.|++|||++++|++.+++||+++||++++++++++|+|||++|||+
T Consensus 241 e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~leria~~tGa~ 320 (515)
T 3iyg_H 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGS 320 (515)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccC
Q 011829 333 VQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGG 412 (476)
Q Consensus 333 ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GG 412 (476)
+++++++++++++|+|+.|++.++|+++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|++++++++||||
T Consensus 321 ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~v~~~~iVpGG 400 (515)
T 3iyg_H 321 IQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGG 400 (515)
T ss_pred EeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 413 GAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 413 G~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
|++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+
T Consensus 401 Ga~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~ 462 (515)
T 3iyg_H 401 GAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG 462 (515)
T ss_pred cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999653
No 2
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=6.2e-107 Score=853.27 Aligned_cols=469 Identities=58% Similarity=0.966 Sum_probs=442.4
Q ss_pred CCchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHH
Q 011829 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (476)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~ 83 (476)
||++|+.+|+++++..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++
T Consensus 5 ~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~ 84 (550)
T 3p9d_G 5 SQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLV 84 (550)
T ss_dssp -----------CCCEEESHHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHH
T ss_pred cCCcchhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 011829 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (476)
Q Consensus 84 ~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~ 163 (476)
++|++||+++||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|++++++++..++ .+++.|.++|+
T Consensus 85 e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~-~~~~~L~~vA~ 163 (550)
T 3p9d_G 85 DISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKS-SGRELLERCAR 163 (550)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC-------CHHHHHH
T ss_pred HHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcc-hhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999875431 12678999999
Q ss_pred HHhccCcCCcchHHHHHHHHHHHhhcCCCC-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEE
Q 011829 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (476)
Q Consensus 164 tsl~sK~~~~~~~~l~~lv~~ai~~~~~~~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill 242 (476)
|+++||+++.|+++|+++++||+.++++.+ |.++|+|++++|++++||++++|++|+++|.||||.+||++++||+|++
T Consensus 164 tsl~sK~~~~~~~~i~~livdAv~~V~~~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll 243 (550)
T 3p9d_G 164 TAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILS 243 (550)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHHCCSSSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEE
T ss_pred HhccCccccccHhHHHHHHHHHHHHhCccccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEEE
Confidence 999999999999999999999999998544 7899999999999999999999999999999999999999999999999
Q ss_pred EeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHH
Q 011829 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (476)
Q Consensus 243 ~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~l 322 (476)
++++|++++++.++++.+++++++.++++.|++++++++++|++.|++||+++++|++.+++||+++||++++++++++|
T Consensus 244 ~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v~k~~l 323 (550)
T 3p9d_G 244 LNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDM 323 (550)
T ss_dssp ECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECCCTTHH
T ss_pred eccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 011829 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (476)
Q Consensus 323 e~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (476)
+|||++||+++++++++++++++|+|+.|++.++++++|++|+||+++++|||+|||+|+.+++|.||+++|||+++|++
T Consensus 324 erIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~a 403 (550)
T 3p9d_G 324 NRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRA 403 (550)
T ss_dssp HHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTCCCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCCceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
+++|++|||||++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++++|++.|..
T Consensus 404 v~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~ 474 (550)
T 3p9d_G 404 LQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSK 474 (550)
T ss_dssp HHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHH
T ss_pred HhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999953
No 3
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=2.2e-105 Score=842.09 Aligned_cols=466 Identities=35% Similarity=0.595 Sum_probs=446.2
Q ss_pred CCCCCchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhH
Q 011829 1 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAK 80 (476)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ 80 (476)
||.++++|+.+++++++..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+
T Consensus 1 m~~~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Ak 80 (548)
T 1q3q_A 1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAK 80 (548)
T ss_dssp --------CCCSCTTCEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHH
T ss_pred CCCcCCCCcccccCCcceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHH
Confidence 77766677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHH
Q 011829 81 ILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSK 160 (476)
Q Consensus 81 ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~ 160 (476)
+++++|++||+++||||||+|+||++||+++.+++++|+||+.|++||+.|++.++++|++++++++..+ ++.|.+
T Consensus 81 ll~e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d----~~~l~~ 156 (548)
T 1q3q_A 81 MMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDD----EETLLK 156 (548)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTC----HHHHHH
T ss_pred HHHHHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987654 789999
Q ss_pred HHHHHhccCcCCcchHHHHHHHHHHHhhcCCC-----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCce
Q 011829 161 CAATTLSSKLIGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKK 234 (476)
Q Consensus 161 va~tsl~sK~~~~~~~~l~~lv~~ai~~~~~~-----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~ 234 (476)
+++|+|+||+.++|+++|++++++|+.+++++ + |.++|+|++++|++++||++++|++|++++.||+| |++
T Consensus 157 va~tsl~sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m---~~~ 233 (548)
T 1q3q_A 157 IAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRM---PKR 233 (548)
T ss_dssp HHHHHSCSSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTS---CSE
T ss_pred HHHHHhhccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCC---cce
Confidence 99999999999999999999999999999753 1 56799999999999999999999999999999986 799
Q ss_pred ecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccc
Q 011829 235 FLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA 314 (476)
Q Consensus 235 ~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i 314 (476)
++||||++++++|++++++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++||+++
T Consensus 234 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av 313 (548)
T 1q3q_A 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAV 313 (548)
T ss_dssp ESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred ecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHH
Q 011829 315 GRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHD 394 (476)
Q Consensus 315 ~~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~d 394 (476)
+++++++|+|||++|||++++++++++++++|+|+.|++..+++++|++|+||++++.|||+|||+|+.+++|.||+++|
T Consensus 314 ~~~~k~~le~ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er~l~D 393 (548)
T 1q3q_A 314 RRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALED 393 (548)
T ss_dssp CSCCHHHHHHHHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCCeEEEEECCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 395 AIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 395 al~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
||+++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+||+.|..
T Consensus 394 Al~~~r~a~~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~ 472 (548)
T 1q3q_A 394 AVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN 472 (548)
T ss_dssp HHHHHHHHHHSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998899999999999999999999999999999999999999999863
No 4
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=2e-105 Score=841.32 Aligned_cols=464 Identities=39% Similarity=0.651 Sum_probs=435.2
Q ss_pred CCchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHH
Q 011829 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (476)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~ 83 (476)
|.++|+.+|+++++..+|.+++.+|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++
T Consensus 11 ~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~ 90 (553)
T 3ko1_A 11 PEGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLV 90 (553)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHH
T ss_pred CCCCeEEEEecCcccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHH
Confidence 55668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 011829 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (476)
Q Consensus 84 ~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~ 163 (476)
++|++||+++||||||+||||++||+++.+++.+|+||+.|++||++|++.++++|++++++++..+ ++.|.++|+
T Consensus 91 e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d----~e~L~~vA~ 166 (553)
T 3ko1_A 91 QIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIND----TDLLRKIAM 166 (553)
T ss_dssp HHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTC----HHHHHHHHH
T ss_pred HHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCc----HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987654 789999999
Q ss_pred HHhccCcCCcchHHHHHHHHHHHhhcCCC-----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecC
Q 011829 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLN 237 (476)
Q Consensus 164 tsl~sK~~~~~~~~l~~lv~~ai~~~~~~-----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~ 237 (476)
|+++||+.++++++|++|+++|+.+++++ . |.++|+|+++.|++..||++++|++|++++.||+| |++++|
T Consensus 167 tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m---~~~ien 243 (553)
T 3ko1_A 167 TSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGM---PKRLEN 243 (553)
T ss_dssp HHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTS---CSCCBS
T ss_pred HHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCC---cccccc
Confidence 99999999999999999999999999864 1 67789999999999999999999999999999986 899999
Q ss_pred ceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCC
Q 011829 238 PKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317 (476)
Q Consensus 238 ~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v 317 (476)
|||++++++|++++++.++++.+++++++.++++.|++++++++++|++.|++|||++++|++.+++||.++||++++++
T Consensus 244 ~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v 323 (553)
T 3ko1_A 244 AKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRA 323 (553)
T ss_dssp CEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCC
T ss_pred ceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHH
Q 011829 318 AEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIM 397 (476)
Q Consensus 318 ~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~ 397 (476)
++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|+||++++.+||+|||+|+.+++|.||+++|||+
T Consensus 324 ~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~ 403 (553)
T 3ko1_A 324 KKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALG 403 (553)
T ss_dssp CHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSSSCEEEEECCSSTTHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCCCceEEEeeeccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 398 IVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 398 ~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+
T Consensus 404 ~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~ 480 (553)
T 3ko1_A 404 TVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENE 480 (553)
T ss_dssp HHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSG
T ss_pred HHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999653
No 5
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=1.4e-104 Score=835.15 Aligned_cols=458 Identities=36% Similarity=0.605 Sum_probs=446.3
Q ss_pred hhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHH
Q 011829 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIA 86 (476)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~ 86 (476)
+| .+|+++++..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|
T Consensus 4 ~p-~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a 82 (543)
T 3ruv_A 4 QP-GVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVA 82 (543)
T ss_dssp CC-CSSCSSEEEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHH
T ss_pred CC-eeecCCcchhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHH
Confidence 45 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHh
Q 011829 87 KSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTL 166 (476)
Q Consensus 87 ~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl 166 (476)
++||+++||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|++++++++..+ ++.|.++|+|++
T Consensus 83 ~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d----~~~L~~va~tsl 158 (543)
T 3ruv_A 83 KTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACEVGAQD----KEILTKIAMTSI 158 (543)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTC----HHHHHHHHHHHH
T ss_pred HHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999987654 789999999999
Q ss_pred ccCcCCcchHHHHHHHHHHHhhcCCC-C--CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEE
Q 011829 167 SSKLIGGEKEFFASMVVDAVGAIGDG-D--RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (476)
Q Consensus 167 ~sK~~~~~~~~l~~lv~~ai~~~~~~-~--~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~ 243 (476)
+||+.++++++|++++++|+.+++++ . |.++|+|+++.|++..||++++|++|++++.||+| +++++||||+++
T Consensus 159 ~sK~~~~~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m---~~~~~n~kIll~ 235 (543)
T 3ruv_A 159 TGKGAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQM---PKKVTDAKIALL 235 (543)
T ss_dssp HHTCGGGCCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTS---CSEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCcccceeecceEEeccccCccc---cccccCcEEEEE
Confidence 99999999999999999999999875 2 67789999999999999999999999999999986 899999999999
Q ss_pred eeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHH
Q 011829 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (476)
Q Consensus 244 ~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le 323 (476)
+++|++++++.++++.+++++++.+++++|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+
T Consensus 236 ~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le 315 (543)
T 3ruv_A 236 NCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDME 315 (543)
T ss_dssp SSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHH
T ss_pred cccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011829 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (476)
Q Consensus 324 ~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~ 403 (476)
|||++|||++++++++++++++|+|+.|++.++++++|++|+||++++.+||+|||+|+.+++|.||+++|||+++|+++
T Consensus 316 ~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av 395 (543)
T 3ruv_A 316 KLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTI 395 (543)
T ss_dssp HHHHHHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 404 ~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
++|++|||||++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.
T Consensus 396 ~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~ 464 (543)
T 3ruv_A 396 EDGRIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHA 464 (543)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred hcCCeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=1.2e-104 Score=836.42 Aligned_cols=461 Identities=37% Similarity=0.613 Sum_probs=433.9
Q ss_pred chhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHH
Q 011829 6 QPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (476)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~ 85 (476)
++|+.+++++++..+|.+++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++
T Consensus 4 ~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~ 83 (543)
T 1a6d_B 4 GQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEV 83 (543)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHH
T ss_pred CcchhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHH
Q 011829 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (476)
Q Consensus 86 ~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~ts 165 (476)
|++||+++||||||+|+||++||+++.+++.+|+||+.|++||+.|++.++++|++++++++..+ ++.|.++++|+
T Consensus 84 a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~----~~~l~~va~ts 159 (543)
T 1a6d_B 84 SKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADE----KALLLKMAQTS 159 (543)
T ss_dssp HTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTH----HHHHHHHHHHH
T ss_pred HHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987543 78999999999
Q ss_pred hccCcCCcchHHHHHHHHHHHhhcCCC-----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCce
Q 011829 166 LSSKLIGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPK 239 (476)
Q Consensus 166 l~sK~~~~~~~~l~~lv~~ai~~~~~~-----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~ 239 (476)
|+||+.++|+++|++++++|+.+++++ . |.++|+|++++|++++||++++|++|++++.||+| |++++|||
T Consensus 160 l~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m---~~~ien~k 236 (543)
T 1a6d_B 160 LNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGM---PDVVKDAK 236 (543)
T ss_dssp HTTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTS---CSEEEEEE
T ss_pred hccccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCC---cceecCCe
Confidence 999999999999999999999999753 1 67789999999999999999999999999999986 79999999
Q ss_pred EEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCH
Q 011829 240 ILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (476)
Q Consensus 240 Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~ 319 (476)
|++++++|++++++.++++.++++++++.+.++|+++++++++++++.|++|||++++|++.+++||.++||++++++++
T Consensus 237 Ill~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k 316 (543)
T 1a6d_B 237 IALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKK 316 (543)
T ss_dssp EEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCH
T ss_pred EEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Q 011829 320 EDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (476)
Q Consensus 320 ~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 399 (476)
++|+|||++|||++++++++++++++|+|+.|++..+++++|++|+||++++.|||+|||+|+.+++|+||+++|||+++
T Consensus 317 ~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~~~ 396 (543)
T 1a6d_B 317 SDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVV 396 (543)
T ss_dssp HHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESSSSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 400 RRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 400 ~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 397 r~a~~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~ 470 (543)
T 1a6d_B 397 ASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAK 470 (543)
T ss_dssp HHHHHHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhC
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999975
No 7
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1e-103 Score=827.04 Aligned_cols=453 Identities=37% Similarity=0.602 Sum_probs=435.6
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccC
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (476)
++++.+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 2 ~~~~~~g~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~G 81 (529)
T 3iyg_A 2 FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVG 81 (529)
T ss_pred CcchhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHh-hcccccCCChHHHHHHHHHHHHHHhccCcCCc
Q 011829 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (476)
Q Consensus 95 DGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~-~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~ 173 (476)
|||||+||||++||+++.+++++|+||+.|++||+.|++.++++|++ ++++++..+ ++.|.++|+|+++||++++
T Consensus 82 DGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~----~e~l~~va~tsl~sK~~~~ 157 (529)
T 3iyg_A 82 DGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG----RDCLINAAKTSMSSKVIGI 157 (529)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999999999 999987654 6899999999999999999
Q ss_pred chHHHHHHHHHHHhhcCC---CC----CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeee
Q 011829 174 EKEFFASMVVDAVGAIGD---GD----RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 174 ~~~~l~~lv~~ai~~~~~---~~----~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~ 246 (476)
++++|++++++|+.++++ +. |.++|+|+++.|+++.||++++|++|++++.||+| |++++||||++++++
T Consensus 158 ~~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m---~~~ien~kIlll~~~ 234 (529)
T 3iyg_A 158 NGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGM---PKRIVNAKIACLDFS 234 (529)
T ss_pred cHHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccC---CcccCCceEEEecCC
Confidence 999999999999999973 11 46679999999999999999999999999999885 899999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHH
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVA 326 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia 326 (476)
|++++++.++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||++++++++++|+|||
T Consensus 235 le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria 314 (529)
T 3iyg_A 235 LQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIA 314 (529)
T ss_pred cccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccccCCC------cccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHH
Q 011829 327 AATGGTVQTSVNNVV------DEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (476)
Q Consensus 327 ~~tGa~ii~~l~~l~------~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 400 (476)
++|||++++++++++ ++++|+|+.|++.++++++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|
T Consensus 315 ~~tGa~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r 394 (529)
T 3iyg_A 315 KASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVK 394 (529)
T ss_pred HHhCCeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCCCceEEEEECCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999987764 57899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 401 RATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 401 ~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
+++++|++|||||++|+++|.+|++++.+.++++|+++++||+|||.||++|++|||+|+.+++++||+.|..+
T Consensus 395 ~~v~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~ 468 (529)
T 3iyg_A 395 RVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEA 468 (529)
T ss_pred HHhhCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999643
No 8
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=3.4e-104 Score=832.51 Aligned_cols=457 Identities=38% Similarity=0.645 Sum_probs=436.1
Q ss_pred hhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHH
Q 011829 8 QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87 (476)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~ 87 (476)
|+.+++++++..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|++++++|+
T Consensus 7 ~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 86 (545)
T 1a6d_A 7 PILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSK 86 (545)
T ss_dssp ----------CEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGG
T ss_pred cccccCCcchhhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhc
Q 011829 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLS 167 (476)
Q Consensus 88 ~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~ 167 (476)
+||+++||||||+|+||++||+++.+++++|+||+.|++||+.|++.++++|++++++ + .+ ++.|.++++|+|+
T Consensus 87 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-~-~~----~~~l~~va~tsl~ 160 (545)
T 1a6d_A 87 AQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-S-TD----DATLRKIALTALS 160 (545)
T ss_dssp CTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-C-CC----HHHHHHHHHHHTT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-C-CC----HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998 5 34 7899999999999
Q ss_pred cCcCCcchHHHHHHHHHHHhhcCCC-----C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEE
Q 011829 168 SKLIGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (476)
Q Consensus 168 sK~~~~~~~~l~~lv~~ai~~~~~~-----~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Il 241 (476)
||+.++|+++|++++++|+.+++++ + |.++|+|++++|++++||++++|++|++++.||+| |++++||+|+
T Consensus 161 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m---~~~ien~kIl 237 (545)
T 1a6d_A 161 GKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKM---PDVVKNAKIA 237 (545)
T ss_dssp TSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTS---CSEEEEEEEE
T ss_pred cccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCC---cceecCCEEE
Confidence 9999999999999999999999754 1 56899999999999999999999999999999986 8999999999
Q ss_pred EEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHH
Q 011829 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (476)
Q Consensus 242 l~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~ 321 (476)
+++++|++++++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++||++++++++++
T Consensus 238 l~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~ 317 (545)
T 1a6d_A 238 LIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSD 317 (545)
T ss_dssp EECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHH
T ss_pred EEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 011829 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (476)
Q Consensus 322 le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 401 (476)
|+|||++|||++++++++++++++|+|+.|++.++++++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|+
T Consensus 318 le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~ 397 (545)
T 1a6d_A 318 MEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAI 397 (545)
T ss_dssp HHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESCSSCEEEEECCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 402 ~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 398 a~~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~ 469 (545)
T 1a6d_A 398 TKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEK 469 (545)
T ss_dssp HHHHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHhCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999998899999999999999999999999999999999999999999975
No 9
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.1e-103 Score=822.08 Aligned_cols=452 Identities=31% Similarity=0.555 Sum_probs=435.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccC
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (476)
+++.++|.+++.+|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 1 ~~~~~~g~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~G 80 (515)
T 3iyg_G 1 NTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVG 80 (515)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcc
Q 011829 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (476)
Q Consensus 95 DGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~ 174 (476)
|||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|++++++++..+ ++.|.++++|+++||.+++|
T Consensus 81 DGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~----~~~l~~va~tsl~sK~i~~~ 156 (515)
T 3iyg_G 81 DGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSN----RDTMLNIINSSITTKVISRW 156 (515)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHHHHHhcCCchhhH
Confidence 99999999999999999999999999999999999999999999999999988655 68999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCC-C-----Cc-cceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeec
Q 011829 175 KEFFASMVVDAVGAIGDG-D-----RL-NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 175 ~~~l~~lv~~ai~~~~~~-~-----~~-~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~L 247 (476)
.+.+++++++|+..+.++ + |. ++|+|++++|+++.||++++|++|++++.||+| |++++||||++++++|
T Consensus 157 ~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m---~~~ien~kIll~~~~L 233 (515)
T 3iyg_G 157 SSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRM---RRYIKNPRIVLLDSSL 233 (515)
T ss_pred HHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCC---cceeeeeEEEEEcccc
Confidence 999999999999988732 1 32 349999999999999999999999999999864 8999999999999999
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHH
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~ 327 (476)
++++++.++++.+++++++.++++.|++++++++++|++.+++|||++++|++.+++||.++||++++++++++|+|||+
T Consensus 234 e~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~ 313 (515)
T 3iyg_G 234 EYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIAR 313 (515)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccccCCCcccCcc-cccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011829 328 ATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (476)
Q Consensus 328 ~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 406 (476)
+|||++++++++++++++|+ |+.|++.++++++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|++++++
T Consensus 314 ~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~ 393 (515)
T 3iyg_G 314 ACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDP 393 (515)
T ss_pred HhCCeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 407 ~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
++|||||++|+++|.+|++++.+.++++|+++++||+|||.||++|++|||+||.+++.+||+.|..
T Consensus 394 ~ivpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~ 460 (515)
T 3iyg_G 394 QLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ 460 (515)
T ss_pred cEEeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999964
No 10
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=9.4e-103 Score=816.86 Aligned_cols=455 Identities=35% Similarity=0.554 Sum_probs=438.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCC--CCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccc
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDK--GTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~--g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~ 92 (476)
++++.+|.+++.+|+.||+.|+++|+|||||+||+|||+++. |+++|||||+|||++|+++||+|+|++++|++||++
T Consensus 2 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e 81 (513)
T 3iyg_B 2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 81 (513)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhh
Confidence 567889999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCC
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~ 172 (476)
+||||||+||||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++.+ ++.+++.|.++|+|+++||+.+
T Consensus 82 ~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~-~~~~~~~l~~va~tslssK~~~ 160 (513)
T 3iyg_B 82 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSD-EVKFRQDLMNIAGTTLSSKLLT 160 (513)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCcccc-cccCHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999998732 1123789999999999999999
Q ss_pred cchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecccccc
Q 011829 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (476)
Q Consensus 173 ~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~ 252 (476)
+++++|++++++|+.+++++.|.++|+|+++.|++..||++++|++|++++.++ ||++++||+|+++|++|+++++
T Consensus 161 ~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~----m~~~~en~kIll~~~~Le~~k~ 236 (513)
T 3iyg_B 161 HHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN----QPKRIENAKILIANTGMDTDKI 236 (513)
T ss_pred cchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCC----CceeecCceEEEEcCCcccccc
Confidence 999999999999999998644678999999999999999999999999999876 5899999999999999999999
Q ss_pred c-cCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCC
Q 011829 253 K-ENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGG 331 (476)
Q Consensus 253 ~-~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa 331 (476)
+ .++++.+++++++.++.+.|+++++++++++++.|++|||++++|++.+++||.+.||++++++++.+|+|||++|||
T Consensus 237 e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~tGa 316 (513)
T 3iyg_B 237 KIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGG 316 (513)
T ss_pred cccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHhCC
Confidence 9 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 011829 332 TVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAG 411 (476)
Q Consensus 332 ~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~G 411 (476)
++++++++++++++|+|+.|++..+++++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|++++++++|||
T Consensus 317 ~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~iVpG 396 (513)
T 3iyg_B 317 EIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYG 396 (513)
T ss_pred EEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 412 GGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 412 GG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..+
T Consensus 397 GGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~ 459 (513)
T 3iyg_B 397 GGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEG 459 (513)
T ss_pred CcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 999999999999999988999999999999999999999999999999999999999999654
No 11
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=1e-103 Score=830.31 Aligned_cols=466 Identities=36% Similarity=0.592 Sum_probs=442.8
Q ss_pred CCCCCch-hhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhh
Q 011829 1 MAAMMQP-QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAA 79 (476)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~ 79 (476)
|+.|.++ +..-|+++++..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~A 80 (559)
T 3p9d_A 1 MSQLFNNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAG 80 (559)
T ss_dssp -------CCCCSCCSSCEEEETHHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHH
T ss_pred CCccccCCccchhhccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHH
Confidence 6776444 456689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHh-hcccccCCChHHHHHHH
Q 011829 80 KILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLL 158 (476)
Q Consensus 80 ~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~-~~~~v~~~~~~~~~~~l 158 (476)
+|++++|++||+++||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|++ ++++++..+ ++.|
T Consensus 81 kll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~----~e~L 156 (559)
T 3p9d_A 81 KILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLG----KETL 156 (559)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC------CTTH
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 999988643 5789
Q ss_pred HHHHHHHhccCcCCcchHHHHHHHHHHHhhcCC------CC-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCC
Q 011829 159 SKCAATTLSSKLIGGEKEFFASMVVDAVGAIGD------GD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQ 231 (476)
Q Consensus 159 ~~va~tsl~sK~~~~~~~~l~~lv~~ai~~~~~------~~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~ 231 (476)
.++|+||++||++++|+++|++|+++|+.++++ +. |.+.|+|++++|+++.||++++|++|++++.||+|
T Consensus 157 ~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m--- 233 (559)
T 3p9d_A 157 INIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAM--- 233 (559)
T ss_dssp HHHHHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTS---
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCc---
Confidence 999999999999999999999999999999983 11 67889999999999999999999999999999985
Q ss_pred Cceec--CceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhc
Q 011829 232 PKKFL--NPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR 309 (476)
Q Consensus 232 ~~~~~--~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~ 309 (476)
|++++ ||||++++++|++++++.++++.++++++++++.++|+++++++++++++.|++|||++++|++.+++||.++
T Consensus 234 ~~~ie~~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~ 313 (559)
T 3p9d_A 234 PKRIAGGNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEA 313 (559)
T ss_dssp CSEECSSSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHT
T ss_pred ceeeccCCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHc
Confidence 89999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCHHHHHHHHHHhCCeecccc------cCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHH
Q 011829 310 DIFCAGRVAEEDLLRVAAATGGTVQTSV------NNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQ 383 (476)
Q Consensus 310 ~I~~i~~v~~~~le~Ia~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~ 383 (476)
||++++++++.+|+|||++|||++++++ ++++++++|+|+.|++..+++++|++|+||+++..|||+|||+|+.
T Consensus 314 ~I~av~~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrG~te~ 393 (559)
T 3p9d_A 314 KIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSKHSSSSIILRGANDY 393 (559)
T ss_dssp TCEEESSCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESSSCCCCEEEEESCHH
T ss_pred CCceEccCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCCCCEEEEEEcCCCHH
Confidence 9999999999999999999999999998 7888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHH
Q 011829 384 FIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDV 463 (476)
Q Consensus 384 ~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~ 463 (476)
+++|.||+++|||+++|+++++|++|||||++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+|+.++
T Consensus 394 ~l~E~kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~v 473 (559)
T 3p9d_A 394 SLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSEL 473 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 011829 464 LNKLRQKHAL 473 (476)
Q Consensus 464 ~~~l~~~h~~ 473 (476)
+.+|++.|..
T Consensus 474 v~~l~~~h~~ 483 (559)
T 3p9d_A 474 VAKLRSYHAA 483 (559)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999999964
No 12
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.4e-101 Score=809.16 Aligned_cols=454 Identities=30% Similarity=0.526 Sum_probs=437.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccC
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (476)
.+++.+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 2 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~G 81 (515)
T 3iyg_E 2 RKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIG 81 (515)
T ss_pred cchhhchHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcc
Q 011829 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (476)
Q Consensus 95 DGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~ 174 (476)
|||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|++++++++... .+++.|.++|+||++||+++.+
T Consensus 82 DGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~--~~~~~l~~vA~tsl~sK~i~~~ 159 (515)
T 3iyg_E 82 DGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDM--KNTEPLIQTAKTTLGSKVVNSC 159 (515)
T ss_pred CchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecCCCc--cCHHHHHHHHHHHhcccchhHH
Confidence 99999999999999999999999999999999999999999999999999886531 2368999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCC---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeecccc
Q 011829 175 KEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELK 250 (476)
Q Consensus 175 ~~~l~~lv~~ai~~~~~~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~ 250 (476)
.+.|+++++||+..+.+. + |.++|+|+++.|+++.||++++|++|+++|.||+| |+..+||+|++++||+++.
T Consensus 160 ~~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m---~~~~~~~kIall~~~le~~ 236 (515)
T 3iyg_E 160 HRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQM---PKQVEDAKIAILTCPFEPP 236 (515)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccc---cccCCCceEEEEcCccccc
Confidence 999999999999998752 1 67899999999999999999999999999999986 8899999999999999999
Q ss_pred ccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhC
Q 011829 251 SEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATG 330 (476)
Q Consensus 251 ~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tG 330 (476)
+++.++++.++++++++.+.++|+++++++++++.+.|++|||++++|++.++++|.++||++++++++++|+|||++||
T Consensus 237 k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tG 316 (515)
T 3iyg_E 237 KPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATG 316 (515)
T ss_pred cccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeecccccCCCcccCcccccEEEEEECC--eEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 011829 331 GTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (476)
Q Consensus 331 a~ii~~l~~l~~~~lG~~~~v~~~~~~~--~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~v 408 (476)
|++++++++++++++|+|+.|++.++|+ ++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|+++++|++
T Consensus 317 a~ii~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~i 396 (515)
T 3iyg_E 317 GRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRV 396 (515)
T ss_pred CEEecccccCCHHHCCcceEEEEEEeccccceEEEEEcCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred cccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 409 VAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 409 v~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..
T Consensus 397 VpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~ 461 (515)
T 3iyg_E 397 VYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVK 461 (515)
T ss_pred CCCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999899999999999999999999999999999999999999999864
No 13
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=6.1e-102 Score=810.58 Aligned_cols=450 Identities=27% Similarity=0.480 Sum_probs=434.4
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccC
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (476)
..+..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 2 ~~~~~~~~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~G 81 (517)
T 3iyg_Z 2 KAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITG 81 (517)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcc
Q 011829 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (476)
Q Consensus 95 DGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~ 174 (476)
|||||+|+||++||+++.+++.+|+||+.|++||++|++.++++|++++++++. + ++.|.++|+|+++||+.+.+
T Consensus 82 DGTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~-~----~~~L~~va~tsl~sKi~~~~ 156 (517)
T 3iyg_Z 82 DGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-D----RETLIDVARTSLRTKVHAEL 156 (517)
T ss_pred CCceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCCCC-C----HHHHHHHHHHHhccccchhH
Confidence 999999999999999999999999999999999999999999999999998874 3 68999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCC---CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccccc
Q 011829 175 KEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (476)
Q Consensus 175 ~~~l~~lv~~ai~~~~~~~---~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~ 251 (476)
.+.|+++++||+..+.++. |.++|+|++++|++..||++++|++|++++.||+| |++++||+|++++++|++++
T Consensus 157 ~d~la~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m---~~~ien~kIll~~~~le~~k 233 (517)
T 3iyg_Z 157 ADVLTEAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDM---KKRVEDAYILTCNVSLEYEK 233 (517)
T ss_pred HHHHHHHHHHHhheeccCCCcCChhHheeeeecCCCccccceEeeEEEeccCCCCCc---cccccCCeEEEecccccccc
Confidence 9999999999999987532 78899999999999999999999999999999884 89999999999999999999
Q ss_pred cccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCe---------EEEecccccHHHHHHHHhcCcccccCCCHHHH
Q 011829 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK---------VVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (476)
Q Consensus 252 ~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~---------lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~l 322 (476)
++.++++.++++++++++.++|++++++.+++|...+++ |||++++|++.+++||.++||++++++++++|
T Consensus 234 ~e~~~~~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~l 313 (517)
T 3iyg_Z 234 TEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNM 313 (517)
T ss_pred cccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHH
Confidence 999999999999999999999999999999999988876 58999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCccc-CcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q 011829 323 LRVAAATGGTVQTSVNNVVDEV-LGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (476)
Q Consensus 323 e~Ia~~tGa~ii~~l~~l~~~~-lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 401 (476)
+|||++|||+++++++++++++ +|+|+ |++..+++++|++|+||++++.|||+|||+|+.+++|.||+++|||+++|+
T Consensus 314 eria~~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~ 392 (517)
T 3iyg_Z 314 ERLTLACGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKN 392 (517)
T ss_pred HHHHHHhCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCCchhheeeecCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999 999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 402 ~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
++++|++|||||++|+++|.+|++++.+.++++|+++++||+|||.+|++|++|||+|+.+++.+|++.|..
T Consensus 393 av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~ 464 (517)
T 3iyg_Z 393 AIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSE 464 (517)
T ss_pred HHhcceEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999998899999999999999999999999999999999999999999964
No 14
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=5e-103 Score=820.76 Aligned_cols=459 Identities=31% Similarity=0.516 Sum_probs=443.5
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhc
Q 011829 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~ 89 (476)
.-++.+.+..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|
T Consensus 6 ~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~q 85 (528)
T 3p9d_D 6 PSNATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQ 85 (528)
T ss_dssp -CCCSSCBCCCHHHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHH
T ss_pred ccccccchhcchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHh
Confidence 34788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccC
Q 011829 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (476)
Q Consensus 90 ~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK 169 (476)
|+++||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|+++++|++..+ ++.|.++|+||++||
T Consensus 86 d~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~----~e~l~~va~tsl~sK 161 (528)
T 3p9d_D 86 DSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSD----REQLVRAASTSLSSK 161 (528)
T ss_dssp HHHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC----HHHHHHHHHHHSCSS
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999988655 789999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhcCCC---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEee
Q 011829 170 LIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (476)
Q Consensus 170 ~~~~~~~~l~~lv~~ai~~~~~~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~ 245 (476)
++++|+++|++|+++|+.++++. . |.++|+|++++|+++.||++++|++|++++.||+| ||++++||||+++++
T Consensus 162 ~~~~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~--m~~~ien~kIll~~~ 239 (528)
T 3p9d_D 162 IVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAG--GPTRKEKAKIGLIQF 239 (528)
T ss_dssp SCSTTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSS--CCSEESSEEEEEECC
T ss_pred ccchhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccceEEEeeeEEeecccCccc--CcccccCceEEEEec
Confidence 99999999999999999999862 2 67899999999999999999999999999999985 699999999999999
Q ss_pred eccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccc-----cHHHHHHHHhcCcccccCCCHH
Q 011829 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEE 320 (476)
Q Consensus 246 ~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i-----~~~~~~~l~~~~I~~i~~v~~~ 320 (476)
+|++++++.++++.++++++++++.++|+++++++++++.+.|++|||++++| ++.+++||.++||+++++++++
T Consensus 240 ~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~ 319 (528)
T 3p9d_D 240 QISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIERE 319 (528)
T ss_dssp CSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTH
T ss_pred cccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCC--C-CceEEEEecCCCHHHHHHHHHHHHHHHH
Q 011829 321 DLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP--S-GRTATIVLRGGADQFIEEAERSLHDAIM 397 (476)
Q Consensus 321 ~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~--~-~~~~TIll~G~t~~~l~e~~~~i~dal~ 397 (476)
+|+|||++|||++++++++++++++|+|+.|++.++++++|++|++|+ + +..|||+|||+|+.+++|.||+++|||+
T Consensus 320 ~le~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~ 399 (528)
T 3p9d_D 320 EIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALC 399 (528)
T ss_dssp HHHHHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6 8899999999999999999999999999
Q ss_pred HHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 398 IVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 398 ~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+||.+++.+|++.|..+
T Consensus 400 ~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~ 476 (528)
T 3p9d_D 400 VIRCLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENG 476 (528)
T ss_dssp HHHHHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSS
T ss_pred HHHHHHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999998543
No 15
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.1e-101 Score=807.49 Aligned_cols=452 Identities=35% Similarity=0.567 Sum_probs=435.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccC
Q 011829 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (476)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 94 (476)
..+..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||+++|
T Consensus 3 ~~~~~~g~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~G 82 (518)
T 3iyg_D 3 YQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAG 82 (518)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhC
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcc
Q 011829 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (476)
Q Consensus 95 DGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~ 174 (476)
|||||+||||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++..+ ++.|.++|+||++||+.++|
T Consensus 83 DGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~----~~~l~~vA~tsl~sK~~~~~ 158 (518)
T 3iyg_D 83 DGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSD----RETLLNSAATSLNSKVVSQY 158 (518)
T ss_pred CCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheeeCCCCC----hHHHHHHhHhhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999987654 68999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCC---CC--CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccc
Q 011829 175 KEFFASMVVDAVGAIGD---GD--RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (476)
Q Consensus 175 ~~~l~~lv~~ai~~~~~---~~--~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~ 249 (476)
.++|++++++|+.++++ +. |.++|+|+++.|++..||++++|++|+++|.| + ||+.++||||++++++|++
T Consensus 159 ~~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~-~---mp~~i~n~kIlll~~~Le~ 234 (518)
T 3iyg_D 159 SSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVAN-S---GITRVEKAKIGLIQFCLSA 234 (518)
T ss_pred HHHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEeccccc-C---CCccccCceEEEEEeeccc
Confidence 99999999999999975 22 67889999999999999999999999999987 4 5899999999999999999
Q ss_pred cccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEe-----cccccHHHHHHHHhcCcccccCCCHHHHHH
Q 011829 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLS-----RLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (476)
Q Consensus 250 ~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~-----~~~i~~~~~~~l~~~~I~~i~~v~~~~le~ 324 (476)
++++.+.++.++++++++++.+.|+++++++++++.+.|++|||+ +++|++.+++||.++||++++++++.+|+|
T Consensus 235 ~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ 314 (518)
T 3iyg_D 235 PKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEF 314 (518)
T ss_pred cccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHH
Confidence 999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHhCCeecccccCCCcccCcccccEEEEEECC-eEEEEEEcCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHH
Q 011829 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN-ERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (476)
Q Consensus 325 Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~-~~~~~~~~~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (476)
||++|||++++++++++++++|+|+.|++.++++ ++|++|+||++ +..|||+|||+|+.+++|.||+++|||+++|++
T Consensus 315 ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~a 394 (518)
T 3iyg_D 315 ICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCL 394 (518)
T ss_pred HHHHhCCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 89999999987 899999999999999999999999999999999
Q ss_pred HhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 403 ~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
+++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+||.+++.+|++.|..+
T Consensus 395 v~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~ 466 (518)
T 3iyg_D 395 VKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQG 466 (518)
T ss_pred HhCCCEeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999988999999999999999999999999999999999999999999753
No 16
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=8.7e-103 Score=823.03 Aligned_cols=463 Identities=30% Similarity=0.555 Sum_probs=437.0
Q ss_pred CchhhhhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHH
Q 011829 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (476)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~ 84 (476)
||+|+.+|+++.+..+|.+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e 80 (590)
T 3p9d_C 1 MQAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLE 80 (590)
T ss_dssp -----CCSCTTCCBCTTHHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHH
T ss_pred CCCCeEeecCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 011829 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPF-IEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (476)
Q Consensus 85 ~~~~~~~~~GDGttt~vlLa~~Ll~~~~~l-i~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~ 163 (476)
+|++||+++||||||+||||++||+++.++ +.+|+||+.|++||+.|++.++++|++++++++..+ ++.|.++|+
T Consensus 81 ~a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~----~e~L~~vA~ 156 (590)
T 3p9d_C 81 LSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVEN----DAAMKKLIQ 156 (590)
T ss_dssp HTTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCTTTTCC----THHHHHHHT
T ss_pred HHHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCC----HHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999988654 578999999
Q ss_pred HHhccCcCCcchHHHHHHHHHHHhhcCCCC------------Cc-cceeeeeeCCCCcccceEEEeEEEeeccCCccccC
Q 011829 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGD------------RL-NMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQ 230 (476)
Q Consensus 164 tsl~sK~~~~~~~~l~~lv~~ai~~~~~~~------------~~-~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~ 230 (476)
|+|+||+.++|+++|++++++|+.+++++. |. ++|+|++++|+++.||++++|++|++++.++.
T Consensus 157 tslsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~--- 233 (590)
T 3p9d_C 157 ASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPK--- 233 (590)
T ss_dssp TTSTTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTT---
T ss_pred HHHhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCCC---
Confidence 999999999999999999999999998631 22 37999999999999999999999999998874
Q ss_pred CCceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcC
Q 011829 231 QPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD 310 (476)
Q Consensus 231 ~~~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~ 310 (476)
||++++||+|++++++|++++++.++++.+++++++.++++.|+++++++++++++.|++|||++++|++.+++||.++|
T Consensus 234 m~~~~en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~ 313 (590)
T 3p9d_C 234 MSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGG 313 (590)
T ss_dssp SCSCEESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTT
T ss_pred CcceeeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCHHHHHHHHHHhCCeecccccCCCcccCcc-cccEEEEEECCeEEEEEEcCCCCce-----------------
Q 011829 311 IFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRT----------------- 372 (476)
Q Consensus 311 I~~i~~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~----------------- 372 (476)
|++|+++++.+|+|||++|||++++++++++++++|+ |+.|++..+++++|++|+||+++..
T Consensus 314 I~av~~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~~~~~~~~~~~~~~~~~~k~~ 393 (590)
T 3p9d_C 314 CSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRR 393 (590)
T ss_dssp CCCCCCCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC-----------------------
T ss_pred ceeeccCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCCccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999 9999999999999999999987766
Q ss_pred ---------------------------------------EEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCc
Q 011829 373 ---------------------------------------ATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGG 413 (476)
Q Consensus 373 ---------------------------------------~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG 413 (476)
+||+|||+|+.+++|.||+++|||+++|+++++|++|||||
T Consensus 394 ~~~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGG 473 (590)
T 3p9d_C 394 WKKNFIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGG 473 (590)
T ss_dssp ----------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTT
T ss_pred hhcchhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCcc
Confidence 99999999999999999999999999999999988999999
Q ss_pred chHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhCC
Q 011829 414 AIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (476)
Q Consensus 414 ~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (476)
++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+||.+++.+|++.|..+
T Consensus 474 a~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~ 534 (590)
T 3p9d_C 474 ATEMAVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG 534 (590)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999543
No 17
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=3.3e-102 Score=819.32 Aligned_cols=462 Identities=32% Similarity=0.542 Sum_probs=438.2
Q ss_pred hhhhccccc--cccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHH
Q 011829 8 QIILLKEGT--DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (476)
Q Consensus 8 ~~~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~ 85 (476)
|..+++++. +..+|.+++.+|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++
T Consensus 28 ~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~ 107 (562)
T 3p9d_E 28 PFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQL 107 (562)
T ss_dssp --CCCSSBCCCSCSHHHHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHHH
T ss_pred CeEEeccCCcceecchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHHH
Confidence 445677763 667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHH
Q 011829 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (476)
Q Consensus 86 ~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~ts 165 (476)
|++||+++||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|++++++++..+...+++.|.++|+||
T Consensus 108 a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L~~vA~tS 187 (562)
T 3p9d_E 108 SKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTS 187 (562)
T ss_dssp HHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHHHHHHHHH
T ss_pred HHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999887642111247899999999
Q ss_pred hccCcCCcchHHHHHHHHHHHhhcCCC---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCcee------
Q 011829 166 LSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKF------ 235 (476)
Q Consensus 166 l~sK~~~~~~~~l~~lv~~ai~~~~~~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~------ 235 (476)
++||+++.+.++|+++++||+..+.+. + |.++|+|+++.|+++.||++++|++|++++.||+| ++..
T Consensus 188 l~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m---~~~~~~~~~~ 264 (562)
T 3p9d_E 188 LGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQM---PKCVLPKEGS 264 (562)
T ss_dssp HSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSC---CC-----TTC
T ss_pred cCCchhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCc---Cccccccccc
Confidence 999999999999999999999998753 2 68899999999999999999999999999999986 6777
Q ss_pred cCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCccccc
Q 011829 236 LNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG 315 (476)
Q Consensus 236 ~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~ 315 (476)
++++|+++++++++.+++.++++.++++++++++.+.|+++++++++++++.|++|||++++|++.++++|.++||++++
T Consensus 265 ~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~ 344 (562)
T 3p9d_E 265 DGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVR 344 (562)
T ss_dssp SSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCEE
T ss_pred ccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECC--eEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 011829 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLH 393 (476)
Q Consensus 316 ~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~--~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~ 393 (476)
++++++|+|||++|||++++++++++++++|+|+.|++.++|+ ++|++|+||++++.|||+|||+|+.+++|.||+++
T Consensus 345 ~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~te~~l~E~kr~i~ 424 (562)
T 3p9d_E 345 WVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALH 424 (562)
T ss_dssp CCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCCSCCEEEEECTTTTTHHHHTHHHH
T ss_pred ccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999985 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 394 DAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 394 dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
|||+++|+++++|++|||||++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.
T Consensus 425 DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~ 503 (562)
T 3p9d_E 425 DSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQL 503 (562)
T ss_dssp HHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999989999999999999999999999999999999999999999985
No 18
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=3.8e-102 Score=819.82 Aligned_cols=460 Identities=26% Similarity=0.449 Sum_probs=439.2
Q ss_pred CCc-hhhhhcccccccccc-HHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHH
Q 011829 4 MMQ-PQIILLKEGTDTSQG-KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKI 81 (476)
Q Consensus 4 ~~~-~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~l 81 (476)
+++ +...+|+++++.++| .+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|
T Consensus 5 ~~~~~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akl 84 (568)
T 3p9d_H 5 LPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKV 84 (568)
T ss_dssp CCCCCCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHHHHH
T ss_pred CCCcchhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHH
Confidence 444 567789999999888 569999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhccccc--CCChHHHHHHHH
Q 011829 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE--GQSLEEKKRLLS 159 (476)
Q Consensus 82 l~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~--~~~~~~~~~~l~ 159 (476)
++++|++||+++||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|+++++++. ..+ ++.|.
T Consensus 85 l~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~~~~~----~~~l~ 160 (568)
T 3p9d_H 85 LVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKND----KNELL 160 (568)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCCCCCT----THHHH
T ss_pred HHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC----HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998762 223 68999
Q ss_pred HHHHHHhccCcCCcchHHHHHHHHHHHhhcCCC--------C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccC
Q 011829 160 KCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG--------D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQ 230 (476)
Q Consensus 160 ~va~tsl~sK~~~~~~~~l~~lv~~ai~~~~~~--------~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~ 230 (476)
++++|+++||+.+++ ++|++|+++|+.+++++ + |.++|+|++++|+++.||++++|++|++++. .
T Consensus 161 ~va~tsl~sK~~~~~-~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~-----~ 234 (568)
T 3p9d_H 161 KMIKPVISSKKYGSE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPE-----G 234 (568)
T ss_dssp HHHHHHHTTTSTTCH-HHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBS-----S
T ss_pred HHHHHHhhccCcchH-HHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeeccc-----C
Confidence 999999999999887 99999999999999763 1 5678999999999999999999999999884 3
Q ss_pred CCceec---CceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHH
Q 011829 231 QPKKFL---NPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA 307 (476)
Q Consensus 231 ~~~~~~---~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~ 307 (476)
|+++++ ||||++++|+|++++++.++++.+++++++.++.++|++++++++++|++.|++|||++++|++.+++||.
T Consensus 235 m~~~i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~ 314 (568)
T 3p9d_H 235 HVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLN 314 (568)
T ss_dssp GGGSCCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHH
T ss_pred CcEEEecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHH
Confidence 689999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccCCCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCC--CCceEEEEecCCCHHHH
Q 011829 308 DRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP--SGRTATIVLRGGADQFI 385 (476)
Q Consensus 308 ~~~I~~i~~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~--~~~~~TIll~G~t~~~l 385 (476)
++||++++++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+ +++.|||+|||+|+.++
T Consensus 315 ~~gI~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l 394 (568)
T 3p9d_H 315 RYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNL 394 (568)
T ss_dssp HHTCEEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHH
T ss_pred HCCeEEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHH
Q 011829 386 EEAERSLHDAIMIVRRATK--NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDV 463 (476)
Q Consensus 386 ~e~~~~i~dal~~~~~~~~--~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~ 463 (476)
+|.||+++|||+++|++++ ++++|||||++|+++|.+|++++.+.++++|+++++||+||+.||++|++|||+|+.++
T Consensus 395 ~E~er~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~ 474 (568)
T 3p9d_H 395 DDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEV 474 (568)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 011829 464 LNKLRQKHAL 473 (476)
Q Consensus 464 ~~~l~~~h~~ 473 (476)
+.+||+.|..
T Consensus 475 v~~l~~~h~~ 484 (568)
T 3p9d_H 475 LPNLYAAHNV 484 (568)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHHHHhhh
Confidence 9999999865
No 19
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.5e-99 Score=793.34 Aligned_cols=450 Identities=27% Similarity=0.445 Sum_probs=430.8
Q ss_pred cccccccc-HHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccc
Q 011829 14 EGTDTSQG-KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (476)
Q Consensus 14 ~~~~~~~~-~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~ 92 (476)
+|+++.+| .+++.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||++
T Consensus 1 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (512)
T 3iyg_Q 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 80 (512)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhh
Confidence 46788899 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcc--cccCCChHHHHHHHHHHHHHHhccCc
Q 011829 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAK--SIEGQSLEEKKRLLSKCAATTLSSKL 170 (476)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~--~v~~~~~~~~~~~l~~va~tsl~sK~ 170 (476)
+||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|+++++ +.+..+ ++.|.++|+|+++||+
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~~~~~~----~~~l~~va~tsl~sK~ 156 (512)
T 3iyg_Q 81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRD----VDEVSSLLHTSVMSKQ 156 (512)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC----HHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999854 334333 6899999999999998
Q ss_pred CCcchHHHHHHHHHHHhhcCCCC---CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeec
Q 011829 171 IGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~~~~~~---~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~L 247 (476)
.+ ++++|++++++|+.++++++ +.++|+|.++.|+++.||++++|++|+++|.+ ||++.+|++|+++++|+
T Consensus 157 ~~-~~~~i~~livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~-----~~~~~~n~kI~ll~~~l 230 (512)
T 3iyg_Q 157 YG-NEVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEG-----DVTSVKDAKIAVYSCPF 230 (512)
T ss_pred cc-chHHHHHHHHHHHHHHhccCCcccHhHeeEeeccCCCcccceEEeeEEEecCcCC-----CCcccccCceEEEeccc
Confidence 65 68999999999999998642 67889999999999999999999999999864 48999999999999999
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHH
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~ 327 (476)
++.+++.++++.+++++++.++.+.|+++++++++++++.|++||+++++|++.++++|++.||++++++++.+|+|||+
T Consensus 231 e~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~ 310 (512)
T 3iyg_Q 231 DGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCK 310 (512)
T ss_pred ccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011829 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (476)
Q Consensus 328 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~-~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 406 (476)
+|||++++++++++++++|+|+.|++.++|+++|++|++|+ .+..|||+|||+|+.+++|.||+++|||+++|+++++|
T Consensus 311 ~tGa~iis~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~ 390 (512)
T 3iyg_Q 311 TVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDK 390 (512)
T ss_pred HhCCEEecccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999997 47899999999999999999999999999999999999
Q ss_pred cccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 407 ~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
++|||||++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+||.+++.+|++.|..
T Consensus 391 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~ 457 (512)
T 3iyg_Q 391 RLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQE 457 (512)
T ss_pred CEecCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998899999999999999999999999999999999999999999864
No 20
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=2.6e-101 Score=809.18 Aligned_cols=459 Identities=36% Similarity=0.570 Sum_probs=440.3
Q ss_pred hhccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeC-CCCCeEEecCHHHHhhhhcccChhhHHHHHHHHh
Q 011829 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHD-DKGTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~-~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~ 88 (476)
.+|+++++..+|.+++.+|+.||+.|+++|+|||||+||+|||++ +.|+++|||||+|||++|+++||+|+|++++|++
T Consensus 4 ~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~ 83 (527)
T 3p9d_B 4 QIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKV 83 (527)
T ss_dssp CSSCSCEEEEESHHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred ehhcCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhc
Q 011829 89 QDSEVGDGTTTVVLLAAEFLREAKPFIED-GVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLS 167 (476)
Q Consensus 89 ~~~~~GDGttt~vlLa~~Ll~~~~~li~~-gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~ 167 (476)
||+++||||||+||||++||+++.+++.+ |+||+.|++||++|++.++++|++++++++.. ++.+++.|.++|+||++
T Consensus 84 qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~-~~~~~~~l~~vA~tSl~ 162 (527)
T 3p9d_B 84 QDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHD-KTMFREDLIHIAKTTLS 162 (527)
T ss_dssp HHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCCCCC-HHHHHHHHHHHHHHHHT
T ss_pred hHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccCCCc-chhhHHHHHHHHHhccc
Confidence 99999999999999999999999999999 99999999999999999999999999988752 22347899999999999
Q ss_pred cCcCCcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeec
Q 011829 168 SKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 168 sK~~~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~L 247 (476)
||+.++++++|++|+++|+.+++++.|.++|+|+++.|++..||++++|++|+++|.+|+ |++++||+|++++++|
T Consensus 163 sK~~~~~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~----p~~~~n~kIlll~~~l 238 (527)
T 3p9d_B 163 SKILSQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ----PKRIENAKILIANTTL 238 (527)
T ss_dssp TSGGGGGHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC----CSCCSSCEEEEECSCS
T ss_pred cCcccchHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCccccEEEEeEEEecccCCCC----CeeeecceEEEecccc
Confidence 999999999999999999999987546778999999999999999999999999999886 6889999999999999
Q ss_pred cccccc-cCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHH
Q 011829 248 ELKSEK-ENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVA 326 (476)
Q Consensus 248 e~~~~~-~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia 326 (476)
++++++ .+.++.+++++++.++.+.|++++++.+++|++.|++||+++++|++.++++|.++||++++++++.+|+|||
T Consensus 239 e~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dle~ia 318 (527)
T 3p9d_B 239 DTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLA 318 (527)
T ss_dssp SCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHHHHHH
T ss_pred ccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 999998 5889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011829 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (476)
Q Consensus 327 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~ 406 (476)
++|||++++++++++++++|+|+.|++..+++++|++|+||+++..|||+|||+|+.+++|.||+++|||+++|+++++|
T Consensus 319 ~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~av~~g 398 (527)
T 3p9d_B 319 LVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKET 398 (527)
T ss_dssp HHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCCSCCEECBCCTTCTTHHHHHHTHHHHHHHHHHHHHHCC
T ss_pred HHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCCCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 407 ~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++++|++.|..
T Consensus 399 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~ 465 (527)
T 3p9d_B 399 RTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYN 465 (527)
T ss_dssp CEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998899999999999999999999999999999999999999999864
No 21
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=2.1e-101 Score=812.33 Aligned_cols=457 Identities=27% Similarity=0.467 Sum_probs=436.9
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcc
Q 011829 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (476)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~ 90 (476)
+++++++..+|.+++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++||
T Consensus 5 ~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd 84 (546)
T 3p9d_F 5 LLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQD 84 (546)
T ss_dssp SSCTTEEEEEHHHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCc
Q 011829 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (476)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~ 170 (476)
+++||||||+||||++||+++.+++.+|+||+.|++||+.|++.++++|++++++++... .+++.|.++|+|+++||+
T Consensus 85 ~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~--~~~~~L~~vA~tsl~sKi 162 (546)
T 3p9d_F 85 EITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLS--NDREFLLQVARSSLLTKV 162 (546)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSS--TTCHHHHHHHHHHTCSTT
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhccccccc--cCHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999999999999886410 125899999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcCCC---C-CccceeeeeeCCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeee
Q 011829 171 IGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 171 ~~~~~~~l~~lv~~ai~~~~~~---~-~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~ 246 (476)
.+.+.+.|+++++||+..+.+. . |.++|++++++|++..||++++|++|++++.||+ ||++++||+|++++|+
T Consensus 163 ~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~---m~~~~en~kIll~~~~ 239 (546)
T 3p9d_F 163 DADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPD---MPTRVKNAYVLILNVS 239 (546)
T ss_dssp HHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSS---SCSSBCSCCCCEECCC
T ss_pred chhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEeccccccc---CcceecCceEEEecCc
Confidence 9999999999999999988631 2 7889999999999999999999999999999986 5899999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC----------CeEEEecccccHHHHHHHHhcCcccccC
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSG----------AKVVLSRLAIGDLATQYFADRDIFCAGR 316 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~----------~~lvi~~~~i~~~~~~~l~~~~I~~i~~ 316 (476)
|++++++.++++.++++++++.+++.|++++++.+++|...+ ++|||++++|++.+++||.++||+++++
T Consensus 240 Le~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~ 319 (546)
T 3p9d_F 240 LEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRR 319 (546)
T ss_dssp SSSCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECC
T ss_pred ccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEec
Confidence 999999999999999999999999999999999999998754 3499999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHH
Q 011829 317 VAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAI 396 (476)
Q Consensus 317 v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal 396 (476)
+++++|+|||++|||++++++++++++++|+|+.|++..+++++|++|+||++++.|||+|||+|+.+++|.||+++|||
T Consensus 320 v~~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl 399 (546)
T 3p9d_F 320 AKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGL 399 (546)
T ss_dssp CCHHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSCCSCEEEECCCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCCCceEEEEECCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccCcchHHHHHHHHHH---HHhhcCchHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 397 MIVRRATKNSTVVAGGGAIDMEISKYLRQ---ESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 397 ~~~~~~~~~~~vv~GGG~~E~~ls~~L~~---~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
+++|+++++|++|||||++|+++|.+|++ ++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.
T Consensus 400 ~~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~ 478 (546)
T 3p9d_F 400 RAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELD 478 (546)
T ss_dssp HHHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHH
T ss_pred HHHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 58889999999999999999999999999999999999999999986
No 22
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=2.1e-93 Score=744.08 Aligned_cols=416 Identities=34% Similarity=0.588 Sum_probs=338.4
Q ss_pred eeeCCCCCeEEecCHHHHhhhhcccChhhHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 011829 51 LIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRN 130 (476)
Q Consensus 51 ~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~ 130 (476)
||+++.|+++|||||+|||++|+++||+|++++++|++||+++||||||+|+||++||+++.+++++|+||+.|++||++
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcCCcchHHHHHHHHHHHhhcCCC--C----C-ccceeeeee
Q 011829 131 ASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG--D----R-LNMIGIKKV 203 (476)
Q Consensus 131 a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~lv~~ai~~~~~~--~----~-~~~I~i~~i 203 (476)
|++.++++|++++++++..+ ++.|.++++|+|+||+.++|+++|++++++|+.+++++ . | .++|+|+++
T Consensus 81 A~~~a~~~L~~~s~~v~~~d----~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~ 156 (500)
T 3aq1_B 81 AAEKCREILETITIAISPDD----EAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKR 156 (500)
T ss_dssp HHHHHHHHHHHHCEECCTTC----HHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCc----HHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEe
Confidence 99999999999999987654 78999999999999999999999999999999999754 1 4 678999999
Q ss_pred CCCCcccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHH
Q 011829 204 PGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDK 283 (476)
Q Consensus 204 ~g~~~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~ 283 (476)
+|+++.||++++|++|++++.||+| |++++||||++++++|++++++.++++.++++++++++.++|++++++++++
T Consensus 157 ~G~~~~ds~lv~G~v~dk~~~~~~m---~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~ 233 (500)
T 3aq1_B 157 AGGSIDDSELIDGLVIDKERSHPNM---PEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEK 233 (500)
T ss_dssp ESSCGGGCEEESEEEESCCCSSTTS---CSEEEEEEEEEESSCBCC-------------------------CHHHHHHHH
T ss_pred cCCCccceEEEeeeEEeecCCCCCC---cccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEE
Q 011829 284 CVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNI 363 (476)
Q Consensus 284 i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~ 363 (476)
+++.|++|||++++|++.+++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++++++|++
T Consensus 234 I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~ 313 (500)
T 3aq1_B 234 VIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTY 313 (500)
T ss_dssp HHTTCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEE
T ss_pred HHHhCcCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHHHHHHHHH
Q 011829 364 FSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAK 443 (476)
Q Consensus 364 ~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~~~~~~a~ 443 (476)
|+||++++.|||+|||+|+.+++|.||+++|||+++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++
T Consensus 314 ~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ 393 (500)
T 3aq1_B 314 VTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAE 393 (500)
T ss_dssp EEEETTCCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred EECCCCCceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHhhC
Q 011829 444 ALEVIPRQLCDNAGFDATDVLNKLRQKHAL 473 (476)
Q Consensus 444 aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~ 473 (476)
||+.||++|++|||+|+.+++++|++.|..
T Consensus 394 ALe~ip~~La~NaG~d~~~~v~~l~~~h~~ 423 (500)
T 3aq1_B 394 ALEVIPVALAENAGLDPIDIMVELRSQHEK 423 (500)
T ss_dssp HTTHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999975
No 23
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=4.2e-86 Score=692.53 Aligned_cols=411 Identities=23% Similarity=0.361 Sum_probs=380.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~ 91 (476)
.+..+|.++|.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++||+
T Consensus 3 k~~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 82 (543)
T 1we3_A 3 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTND 82 (543)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhhe
Confidence 45688999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+||||++||+++.+++.+|+||+.|++||++|++.+++.|++++++++ + ++.|.++++++++
T Consensus 83 e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~----~~~l~~vA~iS~~---- 152 (543)
T 1we3_A 83 VAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE--D----RKAIEEVATISAN---- 152 (543)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCC--S----HHHHHHHHHHHHT----
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--C----HHHHHHhhhhhcC----
Confidence 99999999999999999999999999999999999999999999999999999986 2 5789999998853
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccc-eEEEeEEEeeccCCccc----cCCCceecCceEEEEeee
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds-~li~G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~~~ 246 (476)
++++++++++|+.+++++ +.|+|. +|++++|| ++++|++|+++|.+|+| +.|+++++||+|+++|++
T Consensus 153 ---~~~i~~li~dAv~~V~~~---g~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~ 224 (543)
T 1we3_A 153 ---DPEVGKLIADAMEKVGKE---GIITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK 224 (543)
T ss_dssp ---CHHHHHHHHHHHHTTCTT---SEEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSC
T ss_pred ---CHHHHHHHHHHHHHhCcC---CcEEEe--cCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCC
Confidence 688999999999999865 445554 78999998 99999999999999998 357778999999999987
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCc-----------cccc
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI-----------FCAG 315 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I-----------~~i~ 315 (476)
+ ++.++ +.++++++.+.|++|||++++|++.++++|.+++| +.|+
T Consensus 225 I-------------s~~~~-----------l~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~ 280 (543)
T 1we3_A 225 V-------------SNVRE-----------LLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFG 280 (543)
T ss_dssp B-------------CCHHH-----------HHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSH
T ss_pred c-------------CCHHH-----------HHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchh
Confidence 4 34544 35778899999999999999999999999998654 4455
Q ss_pred CCCHHHHHHHHHHhCCeeccc-----ccCCCcccCcccccEEEEEECCeEEEEEEcCCCC--------------------
Q 011829 316 RVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-------------------- 370 (476)
Q Consensus 316 ~v~~~~le~Ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------- 370 (476)
++++++|+|||++|||+++++ +++++++++|+|+.|++ .++++++|+||+++
T Consensus 281 ~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~ 357 (543)
T 1we3_A 281 DRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKKEDIEARINGIKKELETTDSE 357 (543)
T ss_dssp HHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSH
T ss_pred hhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCch
Confidence 889999999999999999996 89999999999999986 57899999999753
Q ss_pred ---------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHH
Q 011829 371 ---------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQ 435 (476)
Q Consensus 371 ---------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~ 435 (476)
..|||+|||+|+.+++|.||+++|||+++|+++++| +|||||++|++++.+|++++.+.++++|
T Consensus 358 ~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~~q 436 (543)
T 1we3_A 358 YAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEA 436 (543)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCchHH
Confidence 689999999999999999999999999999999999 9999999999999999999988899999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 436 FFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 436 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
+++++|++||+.||++|++|||+|+.+++.+|++.|.
T Consensus 437 ~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~ 473 (543)
T 1we3_A 437 TGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETK 473 (543)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999884
No 24
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=1.2e-85 Score=688.10 Aligned_cols=409 Identities=22% Similarity=0.357 Sum_probs=378.9
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~ 91 (476)
++..+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|+++++++||+
T Consensus 3 k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 82 (547)
T 1kp8_A 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAND 82 (547)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhcc
Confidence 45689999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+||||++||+++.+++.+|+||+.|++||++|++.+++.|+++++|++ + ++.|.+++++|+
T Consensus 83 e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~----~e~l~~vA~iS~----- 151 (547)
T 1kp8_A 83 AAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCS--D----SKAIAQVGTISA----- 151 (547)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCC--S----HHHHHHHHHHHT-----
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCC--C----HHHHHHHHHHhc-----
Confidence 99999999999999999999999999999999999999999999999999999986 2 578999999985
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccc-eEEEeEEEeeccCCccc----cCCCceecCceEEEEeee
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds-~li~G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~~~ 246 (476)
++++++++++++|+.+++++ +.|+|. +|++++|| ++++|++|+++|.||+| +.|+++++||+|+++|++
T Consensus 152 -~~~~~i~~liadAv~~V~~d---g~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~ 225 (547)
T 1kp8_A 152 -NSDETVGKLIAEAMDKVGKE---GVITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKK 225 (547)
T ss_dssp -TSCHHHHHHHHHHHHHHCTT---SEEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESE
T ss_pred -cchhHHHHHHHHHHHHhCcC---CcEEEE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCc
Confidence 36899999999999999865 446654 89999998 99999999999999998 357788999999999997
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCc-----------cccc
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI-----------FCAG 315 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I-----------~~i~ 315 (476)
| ++.++ +.++++++.+.+++|||++++|++.++++|.+++| ++|+
T Consensus 226 I-------------s~~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~ 281 (547)
T 1kp8_A 226 I-------------SNIRE-----------MLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFG 281 (547)
T ss_dssp E-------------CCGGG-----------THHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCH
T ss_pred C-------------CCHHH-----------HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccc
Confidence 5 34444 34678889999999999999999999999998765 4556
Q ss_pred CCCHHHHHHHHHHhCCeeccc-----ccCCCcccCcccccEEEEEECCeEEEEEEcCCCC--------------------
Q 011829 316 RVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-------------------- 370 (476)
Q Consensus 316 ~v~~~~le~Ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------- 370 (476)
++++++|+|||++|||+++++ +++++++++|+|+.|++ .++++++|+||+++
T Consensus 282 ~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~ 358 (547)
T 1kp8_A 282 DRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSD 358 (547)
T ss_dssp HHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSH
T ss_pred cccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCHHHHHHHHHHHHHHhhcccch
Confidence 899999999999999999996 89999999999999987 57999999999764
Q ss_pred ---------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHH
Q 011829 371 ---------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQ 435 (476)
Q Consensus 371 ---------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~ 435 (476)
..|||+|||+|+.+++|.||+++|||+++|+++++| +|||||++|++++.+|++++. .++++|
T Consensus 359 ~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q 436 (547)
T 1kp8_A 359 YDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG-QNADQN 436 (547)
T ss_dssp HHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC-SSHHHH
T ss_pred hhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc-cCchHH
Confidence 689999999999999999999999999999999999 999999999999999999876 789999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 011829 436 FFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQK 470 (476)
Q Consensus 436 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 470 (476)
+++++|++||+.||++|++|||+|+.+++++|++.
T Consensus 437 ~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~ 471 (547)
T 1kp8_A 437 VGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGG 471 (547)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999864
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=1.3e-86 Score=695.77 Aligned_cols=411 Identities=23% Similarity=0.355 Sum_probs=351.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccCh----hhHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~~~ll~~~~~~~~~ 91 (476)
.+..+|.++|.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++|| +|+|++++|++||+
T Consensus 4 k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 83 (545)
T 1iok_A 4 KEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTND 83 (545)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+||||++||+++.+++.+|+||+.|++||+.|++.+++.|+++++|++. ++.|.+++++|+
T Consensus 84 e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~------~e~l~~va~iS~----- 152 (545)
T 1iok_A 84 EAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVND------SSEVAQVGTISA----- 152 (545)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBCCCS------TTTTTHHHHHTT-----
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHHhhc-----
Confidence 999999999999999999999999999999999999999999999999999999863 368899999885
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccc-eEEEeEEEeeccCCccc----cCCCceecCceEEEEeee
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIE 246 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds-~li~G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~~~ 246 (476)
+++++|++++++|+.+++++ +.|+|. +|++++|| ++++|++|+++|.+|+| +.|+++++||+|+++|++
T Consensus 153 -~~~~~i~~li~dAv~~V~~~---g~I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~ 226 (545)
T 1iok_A 153 -NGESFIGQQIAEAMQRVGNE---GVITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKK 226 (545)
T ss_dssp -TTCHHHHHHHHHHHHHHCTT---SCCCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSC
T ss_pred -CCchhHHHHHHHHHHHhccC---CeEEEE--eCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCC
Confidence 36899999999999999865 446664 79999998 99999999999999998 347778999999999998
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcCc-----------cccc
Q 011829 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI-----------FCAG 315 (476)
Q Consensus 247 Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I-----------~~i~ 315 (476)
|+ ++++ +.++++++.+.+++|||++++|++.++++|.+++| ++|+
T Consensus 227 I~-------------~~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~ 282 (545)
T 1iok_A 227 LS-------------SLQP-----------MVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFG 282 (545)
T ss_dssp BC-------------CCCC----------------------CCCCEEEESCBC-----------------CEEEECSCCT
T ss_pred cC-------------CHHH-----------HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhh
Confidence 64 3333 34678889999999999999999999999998766 5567
Q ss_pred CCCHHHHHHHHHHhCCeeccc-----ccCCCcccCcccccEEEEEECCeEEEEEEcCCCC--------------------
Q 011829 316 RVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-------------------- 370 (476)
Q Consensus 316 ~v~~~~le~Ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------- 370 (476)
++++++|+|||++|||+++++ +++++++++|+|+.|++ .++++++|+||+++
T Consensus 283 ~~~~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~ 359 (545)
T 1iok_A 283 DRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSD 359 (545)
T ss_dssp THHHHHHHHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCS
T ss_pred hccHHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCch
Confidence 999999999999999999996 99999999999999987 57999999999754
Q ss_pred ---------------ceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHH
Q 011829 371 ---------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQ 435 (476)
Q Consensus 371 ---------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~ 435 (476)
..|||+|||+|+.+++|.||+++|||+++|+++++| +|||||++|++++.+|++++. .++++|
T Consensus 360 ~~~ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q 437 (545)
T 1iok_A 360 YDREKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG-ANSDQD 437 (545)
T ss_dssp SHHHHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-SSHHHH
T ss_pred hhHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-cCchHH
Confidence 689999999999999999999999999999999999 999999999999999998876 789999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 011829 436 FFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA 472 (476)
Q Consensus 436 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~ 472 (476)
+++++|++||+.||++|++|||+|+.+++++|++.|.
T Consensus 438 ~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~~ 474 (545)
T 1iok_A 438 AGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSD 474 (545)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999998763
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=5.4e-85 Score=681.15 Aligned_cols=408 Identities=24% Similarity=0.346 Sum_probs=308.9
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhhcccChh----hHHHHHHHHhccc
Q 011829 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDS 91 (476)
Q Consensus 16 ~~~~~~~~~~~~n~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----~~ll~~~~~~~~~ 91 (476)
.+..+|.++|.+|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+ |+|++++|++||+
T Consensus 3 k~~~~~~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~ 82 (546)
T 3rtk_A 3 KTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDD 82 (546)
T ss_dssp ----------------------------------------------------------CCCHHHHHHHHHHHHHHTSCC-
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhh
Confidence 357899999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHhccCcC
Q 011829 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (476)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~l~~~~~~v~~~~~~~~~~~l~~va~tsl~sK~~ 171 (476)
++||||||+||||++||+++.+++.+|+||+.|++||++|++.++++|+++++|++ + ++.|.++|++|++
T Consensus 83 e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~v~--~----~e~L~~vA~iS~~---- 152 (546)
T 3rtk_A 83 VAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVE--T----KEQIAATAAISAG---- 152 (546)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCC--S----HHHHHHHHHHHHT----
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--C----hHHHHhHeEEeCC----
Confidence 99999999999999999999999999999999999999999999999999999887 3 5789999998864
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCccceeeeeeCCCCcccceEEEeEEEeeccCCcccc----CCCceecCceEEEEeeec
Q 011829 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (476)
Q Consensus 172 ~~~~~~l~~lv~~ai~~~~~~~~~~~I~i~~i~g~~~~ds~li~G~vl~~~~~~~~~~----~~~~~~~~~~Ill~~~~L 247 (476)
++.+++++++|+.+++.+ +.|+|.+.. +...||++++|++|+++|.||||. .|+++++||+|+++|+++
T Consensus 153 ---~~~i~~liadAv~~V~~d---gvI~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kI 225 (546)
T 3rtk_A 153 ---DQSIGDLIAEAMDKVGNE---GVITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKV 225 (546)
T ss_dssp ---CHHHHHHHHHHHHHSCTT---SEEEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEE
T ss_pred ---chHHHHHHHHHHHHhccC---CceEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCcc
Confidence 678999999999999865 456666432 344689999999999999999983 688999999999999874
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecccccHHHHHHHHhcC------ccc-----ccC
Q 011829 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFC-----AGR 316 (476)
Q Consensus 248 e~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~------I~~-----i~~ 316 (476)
+++++ +.++++++.+.|++|||++++|++.++++|..++ +.+ |++
T Consensus 226 -------------s~~~~-----------l~~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~ 281 (546)
T 3rtk_A 226 -------------STVKD-----------LLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGD 281 (546)
T ss_dssp -------------CCSTT-----------THHHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHH
T ss_pred -------------CCHHH-----------HHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 34444 3466899999999999999999999999998654 333 345
Q ss_pred CCHHHHHHHHHHhCCeecc-----cccCCCcccCcccccEEEEEECCeEEEEEEcCCCCc--------------------
Q 011829 317 VAEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR-------------------- 371 (476)
Q Consensus 317 v~~~~le~Ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~-------------------- 371 (476)
.++++|+|||++|||++++ ++++++++++|+|+.|+ ++++++++|+||++++
T Consensus 282 ~rk~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~ 358 (546)
T 3rtk_A 282 RRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDY 358 (546)
T ss_dssp HHHHHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHH
T ss_pred cchhhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchh
Confidence 5688999999999999999 58999999999999998 4889999999987643
Q ss_pred ---------------eEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcchHHHHHHHHHHHHhhcCchHHH
Q 011829 372 ---------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (476)
Q Consensus 372 ---------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv~GGG~~E~~ls~~L~~~~~~~~~~~~~ 436 (476)
.|||+|||+|+.+++|.||+++|||+++|+++++| +|||||++|+++|.+|++++ .++++|+
T Consensus 359 ~~ekl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~--~~g~eq~ 435 (546)
T 3rtk_A 359 DREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK--LEGDEAT 435 (546)
T ss_dssp HHHHHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC--CCTTHHH
T ss_pred hHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc--cccHHHH
Confidence 79999999999999999999999999999999999 99999999999999999877 7899999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 011829 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQK 470 (476)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~ 470 (476)
++++|++||+.||++|++|||+|+.+++++|++.
T Consensus 436 ~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~ 469 (546)
T 3rtk_A 436 GANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNL 469 (546)
T ss_dssp HHHHHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999875
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=8.5e-39 Score=287.87 Aligned_cols=173 Identities=26% Similarity=0.467 Sum_probs=150.1
Q ss_pred cccceEEEeEEEeeccCCccccCCCceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHc
Q 011829 208 MRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQS 287 (476)
Q Consensus 208 ~~ds~li~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~ 287 (476)
++||++++|++|++++.+++ ||++++||||++++++|++++++.++++.++++++++++.++|++++++++++|++.
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~---mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~ 77 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPR---MRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQL 77 (178)
T ss_dssp --CCSEEEEEEESCCCSSTT---SCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEEEEeccccCCC---CCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36899999999999999875 589999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCeecccccCCCcccCcc-cccEEEEEECCeEEEEEEc
Q 011829 288 GAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSG 366 (476)
Q Consensus 288 ~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~~~~~~~~~~~~ 366 (476)
|+|||+++++|+|.+++||.++||++++++++++|+|||++|||++++++++++++.+|+ |+.|++..+|+++|++|+|
T Consensus 78 g~nVVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~g 157 (178)
T 1gml_A 78 KPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITD 157 (178)
T ss_dssp CCSEEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEE
T ss_pred CCcEEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCceEEEEecCCCHH
Q 011829 367 CPSGRTATIVLRGGADQ 383 (476)
Q Consensus 367 ~~~~~~~TIll~G~t~~ 383 (476)
|+++++|||+|||++..
T Consensus 158 c~~~~~~TIllRG~~~~ 174 (178)
T 1gml_A 158 CKDPKACTILLRGASHH 174 (178)
T ss_dssp ESSTTSCEEEEEC----
T ss_pred CCCCCEEEEEEECCCcc
Confidence 99999999999999864
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=100.00 E-value=9.9e-34 Score=249.71 Aligned_cols=154 Identities=32% Similarity=0.566 Sum_probs=148.1
Q ss_pred EEeEEEeeccCCccccCCCceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 011829 214 VNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVL 293 (476)
Q Consensus 214 i~G~vl~~~~~~~~~~~~~~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~lvi 293 (476)
++|++|++++.+++ ||++++||||++++|+|++++++.++++.++++++++++.++|++++++.+++|++.|+|||+
T Consensus 1 i~Gvv~~k~~~~~~---mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl 77 (159)
T 1ass_A 1 MSGIVIDKEKVHSK---MPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVL 77 (159)
T ss_dssp CCCEEESCCCSCTT---SCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred CceEEEecccCCCC---CCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEE
Confidence 47999999999875 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCeecccccCCCcccCcccccEEEEEECCeEEEEEEcCCCC
Q 011829 294 SRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG 370 (476)
Q Consensus 294 ~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~ 370 (476)
++++|+|.+++||+++||++++++++++|+|||++|||++++++++++++.+|+|+.|++.++|+++|++|+||++.
T Consensus 78 ~~k~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~~ 154 (159)
T 1ass_A 78 CQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNH 154 (159)
T ss_dssp ESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC--
T ss_pred ECCccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999764
No 29
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.28 E-value=1.8e-11 Score=107.66 Aligned_cols=147 Identities=22% Similarity=0.297 Sum_probs=110.7
Q ss_pred ceEEEeEEEeeccCCcccc----CCCceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011829 211 SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQ 286 (476)
Q Consensus 211 s~li~G~vl~~~~~~~~~~----~~~~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~ 286 (476)
.++++|+.||++|.+|||. .|...++||.||+++..+ ++..+ +.+.++++.+
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKI-------------s~i~~-----------ilP~LE~~~~ 57 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKI-------------SSLPD-----------LLPLLEKVAG 57 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEE-------------CCHHH-----------HHHHHHHHHH
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCcc-------------CCHHH-----------HHHHHHHHHH
Confidence 3578999999999999994 566789999999998774 55555 4677888888
Q ss_pred cCCeEEEecccccHHHHHHHHh---cC---ccc-----ccCCCHHHHHHHHHHhCCeeccc-----ccCCCcccCccccc
Q 011829 287 SGAKVVLSRLAIGDLATQYFAD---RD---IFC-----AGRVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEH 350 (476)
Q Consensus 287 ~~~~lvi~~~~i~~~~~~~l~~---~~---I~~-----i~~v~~~~le~Ia~~tGa~ii~~-----l~~l~~~~lG~~~~ 350 (476)
.+.+|+|...+|+..++..|.- +| +.+ |+.-++..|++||.+||+++++. +++++.++||+|++
T Consensus 58 ~~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~ 137 (194)
T 3m6c_A 58 TGKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARR 137 (194)
T ss_dssp HTCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEE
T ss_pred hCCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccE
Confidence 8888999999999999887762 33 223 44555788999999999999974 67788889999998
Q ss_pred EEEEEECCeEEEEEEcCCCCceEEEEecC-CCHHHHHHHHHHHHHHHH
Q 011829 351 FEERQVGNERFNIFSGCPSGRTATIVLRG-GADQFIEEAERSLHDAIM 397 (476)
Q Consensus 351 v~~~~~~~~~~~~~~~~~~~~~~TIll~G-~t~~~l~e~~~~i~dal~ 397 (476)
+.+.+ --|.++.| +++..++++-..|...+.
T Consensus 138 v~vtk----------------d~T~iv~G~g~~~~I~~Rv~qIr~~ie 169 (194)
T 3m6c_A 138 VVVSK----------------DDTVIVDGGGTAEAVANRAKHLRAEID 169 (194)
T ss_dssp EEECS----------------SCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred EEEcC----------------CceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 87621 23555544 566666666555555443
No 30
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=99.23 E-value=8.8e-11 Score=103.56 Aligned_cols=143 Identities=20% Similarity=0.289 Sum_probs=108.1
Q ss_pred EeEEEeeccCCcccc----CCCceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Q 011829 215 NGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK 290 (476)
Q Consensus 215 ~G~vl~~~~~~~~~~----~~~~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~ 290 (476)
+|+.||++|.+|||. .|...++||.||+++..+ ++..+ +.+.++++.+.+.+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKI-------------s~i~~-----------ilP~LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKI-------------SNIRE-----------LLPVLEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEE-------------CCHHH-----------HHHHHHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCcc-------------CCHHH-----------HHHHHHHHHHhCCC
Confidence 599999999999994 466789999999999874 55555 56778888888888
Q ss_pred EEEecccccHHHHHHHHh---cC---ccc-----ccCCCHHHHHHHHHHhCCeeccc-----ccCCCcccCcccccEEEE
Q 011829 291 VVLSRLAIGDLATQYFAD---RD---IFC-----AGRVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEER 354 (476)
Q Consensus 291 lvi~~~~i~~~~~~~l~~---~~---I~~-----i~~v~~~~le~Ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~ 354 (476)
|+|...+|+..++..|.- +| +.+ |+.-++..|++||.+||+++++. +++++.++||+|++|.+.
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~vt 148 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVIN 148 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEEC
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEEc
Confidence 999999999999887762 33 323 34445788999999999999974 677788899999988762
Q ss_pred EECCeEEEEEEcCCCCceEEEEecC-CCHHHHHHHHHHHHHHHH
Q 011829 355 QVGNERFNIFSGCPSGRTATIVLRG-GADQFIEEAERSLHDAIM 397 (476)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~TIll~G-~t~~~l~e~~~~i~dal~ 397 (476)
+ --|.++.| .++..++++-..|...+.
T Consensus 149 k----------------d~TtIv~G~G~~~~I~~Rv~qIr~qie 176 (201)
T 3osx_A 149 K----------------DTTTIIDGVGEEGAIAARVTQIRQQIE 176 (201)
T ss_dssp S----------------SCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred C----------------CceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 1 23555544 566666666555555443
No 31
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=99.23 E-value=2.8e-11 Score=101.55 Aligned_cols=114 Identities=24% Similarity=0.326 Sum_probs=93.2
Q ss_pred eEEEeeccCCccc----cCCCceecCceEEEEeeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeE
Q 011829 216 GVAFKKTFSYAGF----EQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKV 291 (476)
Q Consensus 216 G~vl~~~~~~~~~----~~~~~~~~~~~Ill~~~~Le~~~~~~~~~v~~~~~~~~~~~~~~E~~~l~~~v~~i~~~~~~l 291 (476)
|+.||++|.+||| +.|...++||.||+++..+ ++.++ +.+.++++.+.+..|
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKI-------------s~i~~-----------llP~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKV-------------SNVRE-----------LLPILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEE-------------CCHHH-----------HHHHHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEecccc-------------cCHHH-----------HHHHHHHHHHHCCCE
Confidence 8999999999999 4566789999999998774 55655 567788888888889
Q ss_pred EEecccccHHHHHHHHh---cC---ccc-----ccCCCHHHHHHHHHHhCCeeccc-----ccCCCcccCcccccEEE
Q 011829 292 VLSRLAIGDLATQYFAD---RD---IFC-----AGRVAEEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEE 353 (476)
Q Consensus 292 vi~~~~i~~~~~~~l~~---~~---I~~-----i~~v~~~~le~Ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~ 353 (476)
+|...+|+..++..|.- +| +.+ |+..++..|++||.+||+++++. +++.+.+++|+|+++..
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~v 134 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI 134 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEE
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEE
Confidence 99999999999988763 33 222 45557889999999999999974 56777889999998876
No 32
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=50.84 E-value=26 Score=28.69 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=38.4
Q ss_pred HHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
..+.|.+.++++||+. ++.+-+...|.++||.++......--+-|.....+.
T Consensus 68 ~a~~L~~~gv~vVI~g-~IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~ 119 (136)
T 1o13_A 68 VPNFVKEKGAELVIVR-GIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 119 (136)
T ss_dssp HHHHHHHTTCSEEECS-CCCHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-CCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCC
Confidence 3556677899999988 589999999999999999866544334454444443
No 33
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=50.24 E-value=27 Score=27.74 Aligned_cols=53 Identities=30% Similarity=0.304 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
...+.|.+.++++||+. ++.+-+...|.++||.++......--+-|.....+.
T Consensus 54 ~~~~~L~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~ 106 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GIGRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGK 106 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BCCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCC
Confidence 44566677899999998 589999999999999999765443334444444443
No 34
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=47.05 E-value=33 Score=27.20 Aligned_cols=51 Identities=22% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCH-HHHHHHHHHhCC
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE-EDLLRVAAATGG 331 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~-~~le~Ia~~tGa 331 (476)
..+.|.+.++++|+|. ++.+-+...|.+.||.++..... .--+-|.....+
T Consensus 59 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~g 110 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YVGPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLDG 110 (120)
T ss_dssp HHHHHHHHTEEEEECS-CCCHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEEC-CCCHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHcC
Confidence 4556667899999998 58999999999999999986554 333334444433
No 35
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=43.80 E-value=35 Score=27.18 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=38.0
Q ss_pred HHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 280 ~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
..+.+.+.++++|+|.. +.+-+...|.++||.++......--+-|.....+.
T Consensus 57 ~~~~l~~~gv~~vi~~~-iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 57 TAQIIANNGVKAVIASS-PGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHHTTCCEEEECC-SSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEECC-cCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 34556678999999984 89999999999999998765543334444444444
No 36
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=34.44 E-value=61 Score=26.41 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
...+.+.+.++++|||. ++.+-+...|.+ ||.++......--+-|.....+.
T Consensus 70 ~~~~~L~~~gv~~VI~g-~iG~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G~ 121 (136)
T 2re2_A 70 FMLKSALDHGANALVLS-EIGSPGFNFIKN-KMDVYIVPEMPVADALKLILEGK 121 (136)
T ss_dssp HHHHHHHHTTCSEEEES-CCBHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhCC
Confidence 34555667899999998 589999999999 99998765523333344444443
No 37
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=32.95 E-value=36 Score=26.75 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=37.3
Q ss_pred HHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCCHHHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa~ 332 (476)
.+.+...++++|++.. +.+-+...|.++||.++......--+-|.....+.
T Consensus 55 ~~~l~~~gv~~vi~~~-iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 105 (116)
T 1rdu_A 55 VQSLVSKGVEYLIASN-VGRNAFETLKAAGVKVYRFEGGTVQEAIDAFSEGR 105 (116)
T ss_dssp HHHHHTTTCCEEECSS-CCSSCHHHHHTTTCEEECCCSCBHHHHHHHHHTTC
T ss_pred HHHHHHcCCCEEEECC-CCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHhCC
Confidence 4556678999999984 88888999999999998865544344455555443
No 38
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=28.99 E-value=65 Score=30.21 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=38.7
Q ss_pred HHHHHHcCCeEEEecccccHHHHHHHHhcCcccccC--CC------------------------HHHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGR--VA------------------------EEDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~--v~------------------------~~~le~Ia~~tGa~ 332 (476)
+++|...+|+|||.....++...+.|.+.||.++.- -. .+.++.+++++|-.
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e 154 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKK 154 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCH
Confidence 577888999999987665666778888999877521 10 35678899999865
No 39
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=26.58 E-value=97 Score=28.81 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=36.1
Q ss_pred HHHHHHcCCeEEEecccccHHHHHHHHhcCcccccCCC----HHHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA----EEDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~~v~----~~~le~Ia~~tGa~ 332 (476)
+++|...+|+|||.....++...+.|.+.|..++-... .+.++.|++++|-.
T Consensus 89 ~E~I~~l~PDLIi~~~~~~~~~~~~L~~~gp~v~~~~~~~~~~~~i~~lg~~lg~e 144 (311)
T 2wi8_A 89 IEKILEMKPDVILASTKFPEKTLQKISTAGTTIPVSHISSNWKENMMLLAQLTGKE 144 (311)
T ss_dssp HHHHHHHCCSEEEEETTSCHHHHHHHHTTSCEEEECCCGGGHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCCEEEEcCccCHHHHHHHHhhCCEEEeeCCCcCHHHHHHHHHHHhCCH
Confidence 46778889999998766667777788877755443222 34577888888864
No 40
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=26.47 E-value=66 Score=28.91 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=35.2
Q ss_pred HHHHHHcCCeEEEecccccHHHHHHHHhcCcccc--cCCC----HHHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA--GRVA----EEDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i--~~v~----~~~le~Ia~~tGa~ 332 (476)
+++|...+|+|||.....++...+.|.+.||.++ ..-+ .+.++.++.++|-.
T Consensus 53 ~E~i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 4667888999999876655566677888887654 2212 23467777788764
No 41
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=26.11 E-value=92 Score=22.85 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCeEEEecccccHHH----HHHHHhcCcccccCCCHHHHHHHHHHhCC
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDLA----TQYFADRDIFCAGRVAEEDLLRVAAATGG 331 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~~----~~~l~~~~I~~i~~v~~~~le~Ia~~tGa 331 (476)
+..+.+.+-.+.+|+...+.++.. ..+|.++||.++.--++.+|- .++|-
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eLG---~a~Gk 71 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKLG---KACGI 71 (82)
T ss_dssp HHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHH---HHHTC
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHH---HHhCC
Confidence 334455555789999999998743 345668899887655665544 45554
No 42
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=25.98 E-value=1.1e+02 Score=27.93 Aligned_cols=52 Identities=6% Similarity=0.057 Sum_probs=36.9
Q ss_pred HHHHHHcCCeEEEecccc-cHHHHHHHHhcCcccccC---CC----HHHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAI-GDLATQYFADRDIFCAGR---VA----EEDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i-~~~~~~~l~~~~I~~i~~---v~----~~~le~Ia~~tGa~ 332 (476)
+++|...+|+|||..... ++...+.|.+.||.++.- -. .+.++.|++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (283)
T 2r79_A 52 AEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVP 111 (283)
T ss_dssp HHHHHTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 567889999999987643 456677888888866532 12 24577888888864
No 43
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=24.68 E-value=1.4e+02 Score=23.64 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCeEEEecccccHH-----HHHHHHhcCcccccCCCHHHHHHHHHHhC
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGDL-----ATQYFADRDIFCAGRVAEEDLLRVAAATG 330 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~~-----~~~~l~~~~I~~i~~v~~~~le~Ia~~tG 330 (476)
...+.+.+-.+.+||.+.++++. ...+|.+.||..+..-++.+|.+ ++|
T Consensus 27 ~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~---a~g 80 (121)
T 2lbw_A 27 EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGA---AGA 80 (121)
T ss_dssp HHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHH---HHT
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHH---HhC
Confidence 34555566678999999999873 34567789998876666665554 555
No 44
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=24.40 E-value=79 Score=30.04 Aligned_cols=52 Identities=12% Similarity=-0.030 Sum_probs=34.4
Q ss_pred HHHHHHcCCeEEEecccccHHHHHHHHhcCccccc--CC---C------HHHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG--RV---A------EEDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~~~~~~~l~~~~I~~i~--~v---~------~~~le~Ia~~tGa~ 332 (476)
+++|...+|+|||....-.+...+.+.+.||.++. .- . .+.++.+++++|-.
T Consensus 89 ~E~Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 57778889999998754334555667777877652 11 0 34577788888864
No 45
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=23.83 E-value=2.4e+02 Score=26.45 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=34.7
Q ss_pred HcCCeEEEecccccHHH-HHH---HHhcCccc------ccCCCHHHHHHHHHHhCCeec
Q 011829 286 QSGAKVVLSRLAIGDLA-TQY---FADRDIFC------AGRVAEEDLLRVAAATGGTVQ 334 (476)
Q Consensus 286 ~~~~~lvi~~~~i~~~~-~~~---l~~~~I~~------i~~v~~~~le~Ia~~tGa~ii 334 (476)
+.|++.+++|--+|... ..+ |.+.||.+ ..-.+...+++++..+|+.+=
T Consensus 174 dAGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP 232 (304)
T 3fst_A 174 DAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIP 232 (304)
T ss_dssp HHTCCEEEECCCSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHHHTCCCC
T ss_pred HcCCCEEEeCccCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHcCCCcCC
Confidence 45999999999998533 333 34566432 245667889999999998763
No 46
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=21.70 E-value=1.4e+02 Score=24.07 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCeEEEecccccH-----HHHHHHHhcCcccccCCCHHHHHHHHHHhCC
Q 011829 279 DKLDKCVQSGAKVVLSRLAIGD-----LATQYFADRDIFCAGRVAEEDLLRVAAATGG 331 (476)
Q Consensus 279 ~~v~~i~~~~~~lvi~~~~i~~-----~~~~~l~~~~I~~i~~v~~~~le~Ia~~tGa 331 (476)
...+.+.+-.+.+|+...+.++ ....+|.+++|.++.--++. +|..++|-
T Consensus 31 ~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~---~LG~a~G~ 85 (126)
T 2xzm_U 31 EVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRA---SLGEYLGH 85 (126)
T ss_dssp HHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSH---HHHHHHTC
T ss_pred HHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHH---HHHHHHCC
Confidence 3445555667899999999974 45567788999887544444 45556663
No 47
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=20.38 E-value=1.1e+02 Score=27.33 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=37.2
Q ss_pred HHHHHHcCCeEEEeccccc-HHHHHHHHhcCcccccC---CCH----HHHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLAIG-DLATQYFADRDIFCAGR---VAE----EDLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~i~-~~~~~~l~~~~I~~i~~---v~~----~~le~Ia~~tGa~ 332 (476)
+++|.+.+|+|||...... +...+.|.+.||.++.- -.. +.++.++.++|-.
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 5778899999999877654 45667788888876521 222 3467888888864
No 48
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=20.04 E-value=1e+02 Score=27.48 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=36.2
Q ss_pred HHHHHHcCCeEEEeccc-ccHHHHHHHHhcCcccc--cCC--CHH----HHHHHHHHhCCe
Q 011829 281 LDKCVQSGAKVVLSRLA-IGDLATQYFADRDIFCA--GRV--AEE----DLLRVAAATGGT 332 (476)
Q Consensus 281 v~~i~~~~~~lvi~~~~-i~~~~~~~l~~~~I~~i--~~v--~~~----~le~Ia~~tGa~ 332 (476)
+++|...+|+|||.... .+....+.|.+.||.++ ... ..+ .++.+++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (256)
T 2r7a_A 52 SEGILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVP 112 (256)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 57788899999998654 35666778888998654 221 222 467788888854
Done!