BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011831
         (476 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
           Plasmodium Falciparum
 pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
           Plasmodium Falciparum
          Length = 417

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 324 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNA 360
           GIP +W  L A P+S+ NY      ++L   T+ WN 
Sbjct: 307 GIPDNWMGLDAGPKSIENYK----DVILTSKTVIWNG 339


>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
           Plasmodium Falciparum, In The Open Conformation
 pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
           Plasmodium Falciparum, In The Open Conformation
 pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
           Plasmodium Falciparum, In The Open Conformation
          Length = 425

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 324 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAA--NGPMFAE 370
           GIP +W  L A P+S+ NY      ++L   T+ WN        P FA+
Sbjct: 314 GIPDNWXGLDAGPKSIENYK----DVILTSKTVIWNGPQGVFEXPNFAK 358


>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
           3-Phosphoglycerate Kinase
 pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
           3-Phosphoglycerate Kinase
 pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
           3-Phosphoglycerate Kinase
          Length = 424

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 324 GIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAA--NGPMFAE 370
           GIP +W  L A P+S+ NY      ++L   T+ WN        P FA+
Sbjct: 313 GIPDNWXGLDAGPKSIENYK----DVILTSKTVIWNGPQGVFEXPNFAK 357


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,320,329
Number of Sequences: 62578
Number of extensions: 467209
Number of successful extensions: 1199
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 5
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)