Query 011831
Match_columns 476
No_of_seqs 452 out of 1464
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 16:12:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 9.4E-42 3.2E-46 332.5 33.2 376 12-406 25-410 (451)
2 3o7q_A L-fucose-proton symport 100.0 3.7E-39 1.3E-43 312.9 34.1 359 10-409 21-411 (438)
3 4gc0_A D-xylose-proton symport 100.0 2.5E-38 8.6E-43 311.7 28.1 388 10-405 7-432 (491)
4 2gfp_A EMRD, multidrug resista 100.0 3.9E-37 1.3E-41 292.4 19.8 347 18-405 3-352 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.8E-35 6E-40 291.4 28.8 382 16-405 14-448 (491)
6 2cfq_A Lactose permease; trans 100.0 2.1E-31 7.1E-36 256.2 18.5 348 24-406 16-376 (417)
7 2xut_A Proton/peptide symporte 100.0 6E-30 2.1E-34 254.0 28.9 376 20-405 17-467 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 2.6E-14 8.8E-19 138.5 13.5 176 15-195 252-434 (451)
9 2cfq_A Lactose permease; trans 99.5 4.7E-14 1.6E-18 135.2 12.7 149 49-202 258-407 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.4 6.3E-13 2.1E-17 130.3 13.8 173 20-198 288-475 (491)
11 3o7q_A L-fucose-proton symport 99.4 3.2E-12 1.1E-16 123.2 15.1 164 19-190 262-428 (438)
12 4gc0_A D-xylose-proton symport 99.3 2.4E-11 8.4E-16 118.9 14.1 171 31-201 293-469 (491)
13 2gfp_A EMRD, multidrug resista 99.2 2.1E-11 7.2E-16 114.9 10.6 131 263-406 21-151 (375)
14 2xut_A Proton/peptide symporte 99.2 2.3E-11 8E-16 120.2 11.2 149 245-405 14-174 (524)
15 3mkt_A Multi antimicrobial ext 66.7 82 0.0028 29.2 27.6 36 118-153 139-174 (460)
16 2g9p_A Antimicrobial peptide l 52.3 5.4 0.00019 19.0 0.9 14 69-82 2-15 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=9.4e-42 Score=332.52 Aligned_cols=376 Identities=13% Similarity=0.074 Sum_probs=292.9
Q ss_pred chHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHH
Q 011831 12 GISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWA 91 (476)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~ 91 (476)
.+++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 4567788888899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc
Q 011831 92 FSTAAVGA----SQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF 167 (476)
Q Consensus 92 ~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~ 167 (476)
++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-- 181 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW-- 181 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHH
Q 011831 168 WGVPG-WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQ 246 (476)
Q Consensus 168 ~~~~~-wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (476)
.+ ||+.|++.++++++..++.++..||++......++++.+.+.+... +++..++...++ ...++.+++|.++
T Consensus 182 ---~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 255 (451)
T 1pw4_A 182 ---FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDY-NEKAEQELTAKQ--IFMQYVLPNKLLW 255 (451)
T ss_dssp ---TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH--HHHHHTSSCHHHH
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccc-hhhhhccccccc--chHHHHHcCHHHH
Confidence 78 9999999999888877776666666544332221111111100000 000000111111 1134577888888
Q ss_pred HHHHHHHhhhhhh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhh--ccccCCCcchhHhHHHHH
Q 011831 247 IIVLQGIVGSLPW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRI--SQAYPHSGRVMCAQFSAF 322 (476)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~ 322 (476)
...+..++....+ ....++|.|+++ +|+++.+++.+.+...++.+++.++.|++.||+ ++|+. . ..+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~------~-~~~~~ 328 (451)
T 1pw4_A 256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA------T-GVFFM 328 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH------H-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh------H-HHHHH
Confidence 7777666665544 444789999988 899999999999999999999999999999999 77752 1 11111
Q ss_pred hhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhh-hhhhhhHHHHH
Q 011831 323 MGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGS-FSSFAAPLVGI 401 (476)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-~~~~~~~~~g~ 401 (476)
+......+.+ ......+ ........++.|++.+...+ ...++..|..|+++|++++|+.+.+.++ +..++|.+.|.
T Consensus 329 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~ 405 (451)
T 1pw4_A 329 TLVTIATIVY-WMNPAGN-PTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405 (451)
T ss_dssp HHHHHHHHHT-TSCCTTC-HHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcccC-HHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1111122 34455666677777766666 5678999999999999999999999999 99999999999
Q ss_pred HHhhh
Q 011831 402 LSEKM 406 (476)
Q Consensus 402 l~~~~ 406 (476)
+.|..
T Consensus 406 l~~~~ 410 (451)
T 1pw4_A 406 TVDFF 410 (451)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 99984
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.7e-39 Score=312.93 Aligned_cols=359 Identities=13% Similarity=0.114 Sum_probs=282.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHH
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILC 89 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 89 (476)
+++++..+..+++..+..+++....++.+|.+.+++|.++.+.|++.+.+.+++.++++++|+++||+|||++++.+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34566777788888899999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHh-hc
Q 011831 90 WAFSTAAV---GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMA-GH 165 (476)
Q Consensus 90 ~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~-~~ 165 (476)
.+++.+++ +++++++.+++.|++.|++.+...+...++++|++|+|+|++++++.+.+.++|.+++|.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999999998 54
Q ss_pred ccCCCCc-------------------------hhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhh
Q 011831 166 QFWGVPG-------------------------WRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEK 220 (476)
Q Consensus 166 ~~~~~~~-------------------------wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (476)
.+ ||+.|++.+++.++..++.++.. .|+.+.+++ +++++
T Consensus 181 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~-~~~~~--------- 244 (438)
T 3o7q_A 181 -----VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK-FPALQSDNH-SDAKQ--------- 244 (438)
T ss_dssp -----SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCTTTCC-CCSST---------
T ss_pred -----cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCccccccc-ccccc---------
Confidence 33 99999888877766665554432 222111110 00000
Q ss_pred cCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhhhhh-HHHHHHHH-HHH-hCCChhHHHHHHHHHHhhhhhhhchh
Q 011831 221 GNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSLPWT-AMVFFTMW-FEL-IGFDHSSTAALLSLFAIGCAVGSFLG 297 (476)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~ 297 (476)
++..+..++++|+|.++...+..++....+. ...++|.| +++ +|+++.+++...+...++.+++.++.
T Consensus 245 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 315 (438)
T 3o7q_A 245 ---------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTG 315 (438)
T ss_dssp ---------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 1123445567888888887777666555444 44889999 888 69999999999999999999999999
Q ss_pred hhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccch
Q 011831 298 GVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHR 377 (476)
Q Consensus 298 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 377 (476)
+++.||+++|+. ...+..+........ . ..++.+. ....++.|++.+...+ ...++..|.+|++ +
T Consensus 316 g~l~~r~~~~~~-------~~~~~~~~~~~~~~~-~---~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~ 380 (438)
T 3o7q_A 316 TWLISRFAPHKV-------LAAYALIAMALCLIS-A---FAGGHVG--LIALTLCSAFMSIQYP-TIFSLGIKNLGQD-T 380 (438)
T ss_dssp HHHHHHSCHHHH-------HHHHHHHHHHHHHHH-H---HCCHHHH--HHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-H
T ss_pred HHHHHHhcchHH-------HHHHHHHHHHHHHHH-H---HcCCcHH--HHHHHHHHHHHHHHHH-HHHHHHHhhcccc-c
Confidence 999999999873 122222222111111 1 1222222 2344667777776666 6788888989865 8
Q ss_pred hhHHHHHHhhhhhhhhhhhHHHHHHHhhhhcC
Q 011831 378 TMIYAFDRAFEGSFSSFAAPLVGILSEKMFGY 409 (476)
Q Consensus 378 g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 409 (476)
+++.++.. ...+++.++|.+.|++.|..+++
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~ 411 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI 411 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHHHhcch
Confidence 89999887 67899999999999999997645
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.5e-38 Score=311.74 Aligned_cols=388 Identities=12% Similarity=0.076 Sum_probs=274.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHhcCCC--------CCchhHHHHHHHHHHHhhhhhhhHhhhhcCCch
Q 011831 10 VLGISLSLILINLAAIMERADENLLPSVYKEVSEAFNAG--------PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPA 81 (476)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~ 81 (476)
+++.+.+....+++.++.++|...++..+|.+.++++.+ .++.|++.+.+.+|..++++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 344566666677888999999999999999999987532 235789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHH
Q 011831 82 VLTIGILCWAFSTAAVG------------------ASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGL 143 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 143 (476)
++.++.+++.+++++++ +++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999998 478999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHHHHhhccc---CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhh
Q 011831 144 LSLVGTMGGIGGGVLATIMAGHQF---WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEK 220 (476)
Q Consensus 144 ~~~~~~lG~~~g~~~~~~l~~~~~---~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (476)
.+.+..+|.++++.++..+..... ....+||+.+.+..+..++..+..++.+|+|++...++++++++...++...+
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999999999988775422 22357999999988888888777777777777765554333332222111111
Q ss_pred cCC-----ccchhHHHHHH--hhhhhccchhHHHHHHH-HHhhhhhhhHH-HHHHHHHHHhCCChhHHHHHHHHHHhhhh
Q 011831 221 GNT-----SVSSVWLESWM--ATKAVIKVPTFQIIVLQ-GIVGSLPWTAM-VFFTMWFELIGFDHSSTAALLSLFAIGCA 291 (476)
Q Consensus 221 ~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 291 (476)
+.. +.+...++..+ .....++.+........ .+.....+... .|.|.+.++.+.+..+........++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINL 326 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHH
Confidence 100 00000000011 11122233333333332 22333333333 56777777788888888888888899999
Q ss_pred hhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcc
Q 011831 292 VGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEV 371 (476)
Q Consensus 292 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 371 (476)
++.++.+++.||+|||+.. .............+.......... +. .....++...+.+....|+.+.+.+|+
T Consensus 327 ~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~ 398 (491)
T 4gc0_A 327 TFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQAPG-IV-ALLSMLFYVAAFAMSWGPVCWVLLSEI 398 (491)
T ss_dssp HHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHHHTTCCH-HH-HHHHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHHhcccch-HH-HHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999999999732 111111111111111111222222 22 222333333333333333567899999
Q ss_pred cCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 372 VPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 372 ~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
+|++.|+++.|+.+.++++++.+++.+.+.+.+.
T Consensus 399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887665
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=3.9e-37 Score=292.40 Aligned_cols=347 Identities=13% Similarity=0.142 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHH
Q 011831 18 ILINLAAIMERADENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAV 97 (476)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~ 97 (476)
..+++..+...++...+.+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHH
Q 011831 98 GASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAF 177 (476)
Q Consensus 98 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f 177 (476)
+++++++.+++.|++.|++.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+.+. .+||+.|
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~ 157 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 7999999
Q ss_pred HHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhhh
Q 011831 178 ILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGSL 257 (476)
Q Consensus 178 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (476)
++.+++.++..+...+..||+++..+++ + +..++.++.+|+|.++...+..+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (375)
T 2gfp_A 158 LFLLVLCAGVTFSMARWMPETRPVDAPR---T---------------------RLLTSYKTLFGNSGFNCYLLMLIGGLA 213 (375)
T ss_dssp HHHHHHHHHHHCCCCCSSCCCSTTTCCC---C---------------------CTTTCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcccCCCCccc---c---------------------cHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 9999888777665555555543321110 0 001122345566777766666555554
Q ss_pred hh-hHHHHHHHHHHH-hCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHH-HHhhhhHHHhhhhc
Q 011831 258 PW-TAMVFFTMWFEL-IGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFS-AFMGIPFSWFLLTA 334 (476)
Q Consensus 258 ~~-~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 334 (476)
.+ ....+.|.|+++ +|+++.+++...+...++.+++.++.+++.||.+++. ...... ...+... ....
T Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~---~~~~ 284 (375)
T 2gfp_A 214 GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLM---WIPD 284 (375)
T ss_dssp HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH------HHHHHHHHHTSSSS---SHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH---HHHh
Confidence 43 334778888887 8999999999999999999999999999999998732 111111 1111110 0000
Q ss_pred cccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 335 IPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
. ......+...+..++.|++.+...+ ...++..|..| ++|+++.|+.+...+++..++|.+.|.+.+.
T Consensus 285 ~-~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 285 W-FGVMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred h-hccccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0111233344566777888887777 78899999998 8999999999999999999999999999876
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.8e-35 Score=291.38 Aligned_cols=382 Identities=10% Similarity=0.003 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHHHHhccchhh-HHHHHHh-----cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhh-cCCchhHHHHHH
Q 011831 16 SLILINLAAIMERADENLLPSV-YKEVSEA-----FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVIN-YDRPAVLTIGIL 88 (476)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~-----~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~ 88 (476)
.+..+++..+...+......+. .+.+.++ +|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3444445555555555444333 3445555 99999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCc--chhhHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 011831 89 CWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGV--RGAGFGLLSLVGTMGGIGGGVLATIMAGHQ 166 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~ 166 (476)
+.+++.+++++++|++.+++.|+++|++.+...+...++++|++|+++ |++++++++.+.++|..++|.+++.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~- 172 (491)
T 4aps_A 94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA- 172 (491)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 999999999999999999999999999999999999999999999988 77788889999999999999999999987
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhh-------------------hcCCccch
Q 011831 167 FWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVE-------------------KGNTSVSS 227 (476)
Q Consensus 167 ~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 227 (476)
.+||+.|++.++..++..++.++..++...+..+..+++.+.+..+... .+..+...
T Consensus 173 ----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 248 (491)
T 4aps_A 173 ----AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPA 248 (491)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTH
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 8999999998887766665555443332222111111111100000000 00000000
Q ss_pred -------------------hHHHHHHhhhhhccchhHHHHHHHHHhhhhhhh-HHHHHHHHHHH-hCCChhHHHHHHHHH
Q 011831 228 -------------------VWLESWMATKAVIKVPTFQIIVLQGIVGSLPWT-AMVFFTMWFEL-IGFDHSSTAALLSLF 286 (476)
Q Consensus 228 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~s~~~~g~~~~~~ 286 (476)
.+++.....++..+....+...+.....+..+. ...++|.|.++ .+.+..+.+......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (491)
T 4aps_A 249 YINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLN 328 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHH
T ss_pred chhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccc
Confidence 000000000111111223333333333333333 33678888887 777767778888888
Q ss_pred HhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhcc----ccCcchHHHHHHHHHHHHHHHHhhhcc
Q 011831 287 AIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAI----PQSVSNYYTYAVTLVLMGLTISWNATA 362 (476)
Q Consensus 287 ~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~ 362 (476)
.+..+++.++.+++.||++||+... ......+..+............ ...+..........++.|++.+...+
T Consensus 329 ~~~~~~~~~~~~~l~~r~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~- 405 (491)
T 4aps_A 329 PLFIMLYTPFFAWLWTAWKKNQPSS--PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP- 405 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC---C--HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT-
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH-
Confidence 8999999999999999999986432 1111111111111111111100 01112234455667778888877666
Q ss_pred cccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 363 ANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
...+++.|..|++.|+++.|+.+...+++..++|.+.+.+.+.
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788999999999999999999999999999999999888765
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=2.1e-31 Score=256.22 Aligned_cols=348 Identities=13% Similarity=0.068 Sum_probs=224.6
Q ss_pred HHHHHHHhccchhhHHH-HHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHH---HHHHh
Q 011831 24 AIMERADENLLPSVYKE-VSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFST---AAVGA 99 (476)
Q Consensus 24 ~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~---~~~~~ 99 (476)
.+..........+.+|. +++++|.++.+.|++.+.+.+++.++++++|+++||+|||+++.++..+++++. ...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2cfq_A 16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455566666 556699999999999999999999999999999999999999999888776532 22233
Q ss_pred hhhHH-HHHHHHHHHHhhhhhhhhHHHHHHhhhcCC--CcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCchhHH
Q 011831 100 SQHFL-HVGMWRAVNGFGLAIVIPALQSFIADSYKD--GVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCA 176 (476)
Q Consensus 100 ~~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~ 176 (476)
++... .+...+.+.|++.+...+.....+.++.++ ++|+...+......++|..++|.+++++.+ .+||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------~~~~~~ 169 (417)
T 2cfq_A 96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT------INNQFV 169 (417)
T ss_dssp HHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH------HCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------hchhHH
Confidence 33221 234556666666555554444445554433 456778888888999999999999999987 479999
Q ss_pred HHHHHHHHHHHHHHhheeeccCCCCCCCccCCCCCCChhhHhhhcCCccchhHHHHHHhhhhhccchhHHHHHHHHHhhh
Q 011831 177 FILMATLSVLIAFLVLVFVVDPRKKASTFHGTGENFDRDELVEKGNTSVSSVWLESWMATKAVIKVPTFQIIVLQGIVGS 256 (476)
Q Consensus 177 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (476)
|++.++..++..+..++.+||+++..+ +++++. +++ ++.. .++.++++++|.++...+..+...
T Consensus 170 f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T 2cfq_A 170 FWLGSGCALILAVLLFFAKTDAPSSAT---VANAVG-------ANH--SAFS----LKLALELFRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp HTTTTTTTTTHHHHSCSSCCCCSCSSC---SSSSSS-------SCC--CCCC----HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccccc---cccccc-------ccc--cccc----HHHHHHHhcCCchhhHHHHHHHHH
Confidence 998877755544444444444432110 001000 000 0001 123345677777776655544333
Q ss_pred hhhhHH-HHHHHHHHH-hC---CChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhh
Q 011831 257 LPWTAM-VFFTMWFEL-IG---FDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFL 331 (476)
Q Consensus 257 ~~~~~~-~~~~~~~~~-~g---~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (476)
..+... +++|.|+++ ++ .+....+...+...++.+++.++.+++.||+++|+. . ..+..+... .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~------l-~~~~~~~~~----~ 302 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA------L-LLAGTIMSV----R 302 (417)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH------H-HHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH------H-HHHHHHHHH----H
Confidence 333333 567888766 33 234456777778888889999999999999999873 1 111111111 1
Q ss_pred hhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHH-HhhhhhhhhhhhHHHHHHHhhh
Q 011831 332 LTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFD-RAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
+......++. ..+.+...+.+++.+...+ ....++.|.+|++.||++.++. +...++++.++|.+.|++.|..
T Consensus 303 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 303 IIGSSFATSA-LEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHTTCCSH-HHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred HHHHHHhccH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 1111112222 2233444445555544444 4578999999999999999995 8888899999999999999874
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=6e-30 Score=253.95 Aligned_cols=376 Identities=10% Similarity=-0.023 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHhccchhhH-HHHHHhcC------CCCCchhHHHHHHHHHHHhhhhhhhHhhhhc-CCchhHHHHHHHHH
Q 011831 20 INLAAIMERADENLLPSVY-KEVSEAFN------AGPSDLGYLTFIRNFVQGLSSPLAGVLVINY-DRPAVLTIGILCWA 91 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~------~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~ 91 (476)
+.+..++..+......+.+ +.+.+++| .+..+.|++.+.+.++..++.+++|+++||+ |||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3444455555544444444 45677899 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHH---HHhhhhhhhhhHHHHHHHHhhccc
Q 011831 92 FSTAAVGASQ-HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGL---LSLVGTMGGIGGGVLATIMAGHQF 167 (476)
Q Consensus 92 ~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~~g~~~~~~l~~~~~ 167 (476)
++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+. .+...++|.+++|.+++.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-- 174 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-- 174 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 9999999999 999999999999999999999999999999999999877666 9999999999999999999887
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCCCCccC-CCC-CCChhhHhhhcCCccc-------------------
Q 011831 168 WGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKASTFHG-TGE-NFDRDELVEKGNTSVS------------------- 226 (476)
Q Consensus 168 ~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~------------------- 226 (476)
.+||+.|++.+++.++..++.++..++.++...+.++ .+. +......+......+.
T Consensus 175 ---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (524)
T 2xut_A 175 ---FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVN 251 (524)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGG
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcc
Confidence 8999999999888766655554433322111111000 000 0000000000000000
Q ss_pred --h------------hHHHHH--Hhh------------hhhccchhHHHHHHHHHhhhh---hhhH-HHHHHHHHHHhCC
Q 011831 227 --S------------VWLESW--MAT------------KAVIKVPTFQIIVLQGIVGSL---PWTA-MVFFTMWFELIGF 274 (476)
Q Consensus 227 --~------------~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~g~ 274 (476)
. ...+.. .++ +...+.+.............. .+.. ...++.+..+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
T 2xut_A 252 IPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK 331 (524)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCC
T ss_pred cchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCC
Confidence 0 000000 000 000111222222211111111 1111 1233444443333
Q ss_pred Ch-hHHHHHHHHHHhhhhhhhchhhhhh----hhhccccCCCcchhHhHHHHHhhhhHHHhhhhccc-----cCcchHHH
Q 011831 275 DH-SSTAALLSLFAIGCAVGSFLGGVVA----DRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIP-----QSVSNYYT 344 (476)
Q Consensus 275 s~-~~~g~~~~~~~~~~~~~~~~~g~l~----dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 344 (476)
+. ...+.+.....++.++...+.+++. ||.++|... ......+..+..... +...... ........
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 407 (524)
T 2xut_A 332 PQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA---LRKMGAGIAITGLSW-IVVGTIQLMMDGGSALSIFW 407 (524)
T ss_dssp CSSSCHHHHHTTSGGGHHHHGGGTTTC------------CC---HHHHHTHHHHHHHHH-HTTTTTTTTTTTTCCCCSHH
T ss_pred CeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh---HHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcCHHH
Confidence 22 2355555555566666666666654 443332211 111122222211111 1111111 01112233
Q ss_pred HHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhh
Q 011831 345 YAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEK 405 (476)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 405 (476)
..+..++.|++.+...+ ...+++.|..|++.||+++|+.+...++|+.++|.+.|.+.+.
T Consensus 408 ~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 408 QILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44567778888777777 7788999999999999999999999999999999999998874
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.55 E-value=2.6e-14 Score=138.53 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhc--CCchhHHHHHHHHH
Q 011831 15 LSLILINLAAIMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINY--DRPAVLTIGILCWA 91 (476)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~~~~~~~~~~ 91 (476)
+.+..+.+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 344455555566666656666777877777 899999999999999999999999999999999 99999888887776
Q ss_pred -HHHHHHHhh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhh-hhhhHHHHHHHHhhccc
Q 011831 92 -FSTAAVGAS--QHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTM-GGIGGGVLATIMAGHQF 167 (476)
Q Consensus 92 -~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~g~~~~~~l~~~~~ 167 (476)
++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-- 409 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-- 409 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 666666665 36777888889999999999999999999999999999999999999999 999999999999987
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhheee
Q 011831 168 WGVPGWRCAFILMATLSVLIAFLVLVFV 195 (476)
Q Consensus 168 ~~~~~wr~~f~i~~~~~~~~~~~~~~~~ 195 (476)
.||+..|++.+++.++..++.++..
T Consensus 410 ---~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 410 ---FGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp ---SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888877776666544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.53 E-value=4.7e-14 Score=135.18 Aligned_cols=149 Identities=11% Similarity=0.183 Sum_probs=127.7
Q ss_pred CCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 011831 49 PSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQHFLHVGMWRAVNGFGLAIVIPALQSFI 128 (476)
Q Consensus 49 ~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 128 (476)
..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888899999999999999999999999999888888888888888888888888888877778888999
Q ss_pred hhhcCCCcchhhHHH-HHhhhhhhhhhHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHHHHHhheeeccCCCCC
Q 011831 129 ADSYKDGVRGAGFGL-LSLVGTMGGIGGGVLATIMAGHQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDPRKKA 202 (476)
Q Consensus 129 ~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~~~~~l~~~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~~~~~ 202 (476)
+|.+|++.|+++.++ ++....+|..++|.+++.+.+. .|++..|.+.+++.++..++.++..+++++.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 999999999999999 5888899999999999999887 78999999999888877777666666544433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.44 E-value=6.3e-13 Score=130.32 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHH-----HHHHHHHHH
Q 011831 20 INLAAIMERADENLLPSVYKEVSEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLT-----IGILCWAFS 93 (476)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~-----~~~~~~~~~ 93 (476)
+.+..+............+|.+.++ ++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~ 367 (491)
T 4aps_A 288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS 367 (491)
T ss_dssp HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 3333444444444555556655554 6777688899999999999999999999999999987655 777777777
Q ss_pred HHHHHhhh---------hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhh
Q 011831 94 TAAVGASQ---------HFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAG 164 (476)
Q Consensus 94 ~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~ 164 (476)
.++.++.. +.+.+.+.-++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 368 FLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77766654 677788888999999999999999999999999999999999999999999999999988876
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHhheeeccC
Q 011831 165 HQFWGVPGWRCAFILMATLSVLIAFLVLVFVVDP 198 (476)
Q Consensus 165 ~~~~~~~~wr~~f~i~~~~~~~~~~~~~~~~~~~ 198 (476)
.++.+.|.+.++.+++..++.++..++.
T Consensus 448 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 448 ------KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp ------SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877777776665543
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=3.2e-12 Score=123.22 Aligned_cols=164 Identities=11% Similarity=-0.043 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHhccchhhHHHH-HHh-cCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHH
Q 011831 19 LINLAAIMERADENLLPSVYKEV-SEA-FNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAA 96 (476)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i-~~~-~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 96 (476)
...+..++............|.+ .++ +|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 341 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33444444444444455555655 555 5999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhcccCCCCc-hhH
Q 011831 97 VGASQHFLHVGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQFWGVPG-WRC 175 (476)
Q Consensus 97 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~~~~~~-wr~ 175 (476)
..+.++.+.++.. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+. .| ++.
T Consensus 342 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-----~g~~~~ 413 (438)
T 3o7q_A 342 SAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-----AGNIPT 413 (438)
T ss_dssp HHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-----HTSSGG
T ss_pred HHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-----hcchHH
Confidence 8888887765555 8899999999999999999999765 888888877 5669999999999999987 67 999
Q ss_pred HHHHHHHHHHHHHHH
Q 011831 176 AFILMATLSVLIAFL 190 (476)
Q Consensus 176 ~f~i~~~~~~~~~~~ 190 (476)
.|++.++..++..+.
T Consensus 414 ~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 414 AELIPALCFAVIFIF 428 (438)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 998876655444433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.29 E-value=2.4e-11 Score=118.94 Aligned_cols=171 Identities=15% Similarity=0.104 Sum_probs=125.8
Q ss_pred hccchhhHHHHHHhcCCCCCchhHHHHHHHHHHHhhhhhhhHhhhhcCCchhHHHHHHHHHHHHHHHHhhh-----hHHH
Q 011831 31 ENLLPSVYKEVSEAFNAGPSDLGYLTFIRNFVQGLSSPLAGVLVINYDRPAVLTIGILCWAFSTAAVGASQ-----HFLH 105 (476)
Q Consensus 31 ~~~~~~~~~~i~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~ 105 (476)
...+....+.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+... +...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 372 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 372 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHH
Confidence 33445556778888887777777777888888999999999999999999999999988888877665532 1222
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhhhHHHHHHHHhhccc-CCCCchhHHHHHHHHHH
Q 011831 106 VGMWRAVNGFGLAIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGIGGGVLATIMAGHQF-WGVPGWRCAFILMATLS 184 (476)
Q Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~~~~~l~~~~~-~~~~~wr~~f~i~~~~~ 184 (476)
+...-+..+.......+....+.+|.+|.+.|++++|+......+|..+++.+...+.+... ....++.+.|++.++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22222222222233456778899999999999999999999999999998888766543200 01145677888999999
Q ss_pred HHHHHHhheeeccCCCC
Q 011831 185 VLIAFLVLVFVVDPRKK 201 (476)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ 201 (476)
++..+..+++.||++.+
T Consensus 453 ~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 453 VLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHheecCCCCC
Confidence 88888888888887654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.25 E-value=2.1e-11 Score=114.93 Aligned_cols=131 Identities=6% Similarity=0.023 Sum_probs=101.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhhhhhhhchhhhhhhhhccccCCCcchhHhHHHHHhhhhHHHhhhhccccCcchH
Q 011831 263 VFFTMWFELIGFDHSSTAALLSLFAIGCAVGSFLGGVVADRISQAYPHSGRVMCAQFSAFMGIPFSWFLLTAIPQSVSNY 342 (476)
Q Consensus 263 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (476)
..+|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+... .+............ ..+ ..
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-------~~~~~~~~~~~~~~----~~~-~~ 88 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL-------VGMSIFMLATLVAV----TTS-SL 88 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH-------HHHHHHHHHHHHHH----HHH-HH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-------HHHHHHHHHHHHHH----Hhc-cH
Confidence 5577777789999999999999999999999999999999999998532 11111111111111 112 23
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHHHHhhhhhhhhhhhHHHHHHHhhh
Q 011831 343 YTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAFDRAFEGSFSSFAAPLVGILSEKM 406 (476)
Q Consensus 343 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 406 (476)
..+.+..++.|++.+...+ ...+++.|..|+++|++++++.+....++..++|.+.+.+.+..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 151 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 4455677788888887777 77899999999999999999999999999999999999998763
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.24 E-value=2.3e-11 Score=120.15 Aligned_cols=149 Identities=13% Similarity=0.073 Sum_probs=107.1
Q ss_pred HHHHHHHHHhh-hhhhhHHHHHHHHHHH-hC------CChhHHHHHHHHHHhhhhhhhchhhhhhhhh-ccccCCCcchh
Q 011831 245 FQIIVLQGIVG-SLPWTAMVFFTMWFEL-IG------FDHSSTAALLSLFAIGCAVGSFLGGVVADRI-SQAYPHSGRVM 315 (476)
Q Consensus 245 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~g------~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~~~~ 315 (476)
++...+..++. ...+....+++.|+++ +| +++.+.+.+.+...++..++.++.|+++||+ |||+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~----- 88 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI----- 88 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-----
Confidence 33344433333 3345555788888876 88 9999999999999999999999999999999 998731
Q ss_pred HhHHHHHhhhhHHHhhhhccccCcchHHHHHHHHHHHHHHHHhhhcccccchhhcccCccchhhHHHH---HHhhhhhhh
Q 011831 316 CAQFSAFMGIPFSWFLLTAIPQSVSNYYTYAVTLVLMGLTISWNATAANGPMFAEVVPAKHRTMIYAF---DRAFEGSFS 392 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~~~~ 392 (476)
..+..+....... ....+.....+.+..++.|++.+...+ ...+++.|.+|+++|+++.+. .+...++|.
T Consensus 89 --~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 89 --LWLSLIYCVGHAF----LAIFEHSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp --HHHHHHHHHHHHH----HHHTSSCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH----HHHhcccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 1122211111111 111221234455667788988888777 778999999999999876666 889999999
Q ss_pred hhhhHHHHHHHhh
Q 011831 393 SFAAPLVGILSEK 405 (476)
Q Consensus 393 ~~~~~~~g~l~~~ 405 (476)
.++|.+.+.+.+.
T Consensus 162 ~~g~~~~~~l~~~ 174 (524)
T 2xut_A 162 FFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHTSTHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999876
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=66.72 E-value=82 Score=29.21 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHhhhcCCCcchhhHHHHHhhhhhhhh
Q 011831 118 AIVIPALQSFIADSYKDGVRGAGFGLLSLVGTMGGI 153 (476)
Q Consensus 118 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ 153 (476)
+................++|.+...+.+....+-.+
T Consensus 139 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 174 (460)
T 3mkt_A 139 AVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNI 174 (460)
T ss_dssp HHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 333334445556666677777777666655554333
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=52.32 E-value=5.4 Score=19.05 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=11.3
Q ss_pred hhhHhhhhcCCchh
Q 011831 69 LAGVLVINYDRPAV 82 (476)
Q Consensus 69 ~~G~l~dr~Grr~~ 82 (476)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
Done!