BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011832
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 295 bits (754), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 161/483 (33%), Positives = 264/483 (54%), Gaps = 31/483 (6%)
Query: 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSE 65
+ PH+++ P P Q H+N + KLA++ L G +TF+N+++NH+RL++ F +++
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRG-PKAFDGFTD 65
Query: 66 FQFKTISDGLPADHPRAGD-QLMEMFDSLSLNTRP--------LLKQMLIDTS-PPVSCI 115
F F++I DGL P GD + + +L + R LL ++ T+ PPV+C+
Sbjct: 66 FNFESIPDGL---TPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCL 122
Query: 116 IGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAYDED------ 169
+ D CM F + A E E+P + + + SACS ++ G +P K DE
Sbjct: 123 VSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFK--DESYLTNGC 180
Query: 170 MDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEE 229
++ + +PG++ F R +D+ F R ++ D L+ + + ++LNTF +LE
Sbjct: 181 LETKVDWIPGLKNF-RLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELES 239
Query: 230 PILSHIRTKCPKVYTIGPLHLQLKTRFAXXXXXXXXXXXXXXXWEVDRSCIEWLGKQPVR 289
+++ + + P +Y IGPL LK W+ D C++WL +
Sbjct: 240 DVINALSSTIPSIYPIGPLPSLLK----QTPQIHQLDSLDSNLWKEDTECLDWLESKEPG 295
Query: 290 SVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL--AELVEGTKER 347
SV+YV+FGS T++ EQL+EF GL + K+ FLW+IRPD VIG G + +E +R
Sbjct: 296 SVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG-GSVIFSSEFTNEIADR 354
Query: 348 GLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVW 407
GL+ SW PQ++VL H ++ GFLTH GWNST ESI AGVPM+CWP+FADQ + RF+ W
Sbjct: 355 GLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEW 414
Query: 408 NLGLDMKDVCDRNVVEKMVNDLMV-ERKEEFXXXXXXXXXXXXXXXNEGGPSYCNLDRLI 466
+G+++ R + K++N+++ ++ ++ GG SY NL+++I
Sbjct: 415 EIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVI 474
Query: 467 DDI 469
D+
Sbjct: 475 KDV 477
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 198/418 (47%), Gaps = 29/418 (6%)
Query: 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTF-LNSKHNHERLIRYTDIHDR 59
M + +PH+ + P +H +L + A F S I + +H
Sbjct: 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTM 60
Query: 60 FLQYSEFQFKTISDGLPADHPRAG--DQLMEMFDSLSLNT-RPLLKQMLIDTSPPVSCII 116
+ ISDG+P + AG + +E+F + + R + + +T PVSC++
Sbjct: 61 QCNIKSYD---ISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLV 117
Query: 117 GDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAYDEDMDRLITK 176
DA + F D+A E+ + + F S + I E+ + ++ + D L+
Sbjct: 118 ADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIRE--KIGVSGIQGREDELLNF 175
Query: 177 VPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIR 236
+PGM +RFRDL ++ ++L Q P+A A+ +N+FE+L++ + + ++
Sbjct: 176 IPGMSK-VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLK 234
Query: 237 TKCPKVYTIGPLHLQLKTRFAXXXXXXXXXXXXXXXWEVDRSCIEWLGKQPVRSVLYVSF 296
+K IGP +L C++WL ++ SV+Y+SF
Sbjct: 235 SKLKTYLNIGPFNLITPPPVVPNTT----------------GCLQWLKERKPTSVVYISF 278
Query: 297 GSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQ 356
G++T +++ L S+ F+W +R + + + +E T+ G++V W PQ
Sbjct: 279 GTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF---LEKTRGYGMVVPWAPQ 335
Query: 357 EEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMK 414
EVLAH+AV F+TH GWNS ES+ GVP+IC P+F DQ++N R V +V +G+ ++
Sbjct: 336 AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE 393
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 138/461 (29%), Positives = 212/461 (45%), Gaps = 68/461 (14%)
Query: 3 EKPKSPHILIFPLPCQSHMNSMLKLAE-IFGLAGLKVTFLNSKHNHERLIRYT------- 54
E+ K+PH+ I P P H+ +++ A+ + L GL VTF+ + + T
Sbjct: 2 EESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPS 61
Query: 55 DIHDRFL---QYSEFQFKT-ISDGLPADHPRAGDQLMEMFDSLSLNTRPLLKQMLIDTSP 110
I FL ++ T I + R+ +L ++FDS R L +++D
Sbjct: 62 SISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGR-LPTALVVD--- 117
Query: 111 PVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAYDEDM 170
+ G DVA E +P F +A + +P++ + + E +
Sbjct: 118 ----LFGTDAF----DVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPL 169
Query: 171 DRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEP 230
+PG + +D D D + L + T++ A +++NTF +LE
Sbjct: 170 -----MLPGC-VPVAGKDF--LDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPN 221
Query: 231 ILSHIRTKC---PKVYTIGPLHLQLKTRFAXXXXXXXXXXXXXXXWEVDRSCIEWLGKQP 287
+ ++ P VY +GPL + + + A + C++WL QP
Sbjct: 222 AIKALQEPGLDKPPVYPVGPL-VNIGKQEAKQTE--------------ESECLKWLDNQP 266
Query: 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIG---------EGDALA 338
+ SVLYVSFGS L EQL E GL DS+QRFLWVIR S I + D L
Sbjct: 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLT 326
Query: 339 ELVEG----TKERGLLVS-WVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYF 393
L G TK+RG ++ W PQ +VLAH + GFLTH GWNSTLES+V+G+P+I WP +
Sbjct: 327 FLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLY 386
Query: 394 ADQQINSRFVSEVWNLGLDMKDVCD----RNVVEKMVNDLM 430
A+Q++N+ +SE L + D R V ++V LM
Sbjct: 387 AEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLM 427
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 191/434 (44%), Gaps = 40/434 (9%)
Query: 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQF 68
H+ + P +H +L L + KVTF ++ + FL ++
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSR-SNEFL--PNIKY 71
Query: 69 KTISDGLPADHPRAGDQLMEMF---DSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVV 125
+ DGLP + +G+ +F ++ N + ++ + + +T ++C++ DA F
Sbjct: 72 YNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGA 131
Query: 126 DVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAYDEDMDRLITKVPGMETFLR 185
D+A E+ + S + ++I+ + +D + I +PG L+
Sbjct: 132 DLAEEMHAKWVPLWTAGPHSLLTHVYT-DLIREKTGSKEVHDV---KSIDVLPGFPE-LK 186
Query: 186 FRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCPKVYTI 245
DLP + D+ +L + PRA+A+ +N+F + I + + +K + +
Sbjct: 187 ASDLPEGV-IKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNV 245
Query: 246 GPLHLQLKTRFAXXXXXXXXXXXXXXXWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKRE 305
GP +L R + C+EWL + SV+Y+SFGS+
Sbjct: 246 GPFNLTTPQRKVSD----------------EHGCLEWLDQHENSSVVYISFGSVVTPPPH 289
Query: 306 QLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEG----TKERGLLVSWVPQEEVLA 361
+L L + F+W R GD +L +G TK +G +V+W PQ E+L
Sbjct: 290 ELTALAESLEECGFPFIWSFR-------GDPKEKLPKGFLERTKTKGKIVAWAPQVEILK 342
Query: 362 HQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD-VCDRN 420
H +V FLTHSGWNS LE IV GVPMI P+F DQ +N+ V +G+ + + V +
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKE 402
Query: 421 VVEKMVNDLMVERK 434
++K + M K
Sbjct: 403 SIKKALELTMSSEK 416
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 125/499 (25%), Positives = 215/499 (43%), Gaps = 70/499 (14%)
Query: 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRF 60
M + K+ ++ P P H+ S L+ A++ NH++ + T +F
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLL-------------TNHDKNLYITVFCIKF 49
Query: 61 --LQYSEFQFKTISDGLPA----DHPRAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSC 114
+ +++ K++ P D P E+ S L+ ++ +
Sbjct: 50 PGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKT 109
Query: 115 IIGDACMEFV--------VDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAY 166
I+ + + V +DV E IP F S + S+ ++ ++
Sbjct: 110 ILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLF----LTSNVGFLSLMLSLKNRQIEEVFD 165
Query: 167 DEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFED 226
D D D + +PG+ + LP C D ++ +I+NTF D
Sbjct: 166 DSDRDHQLLNIPGISNQVPSNVLPDACFNK---DGGYIAYYKLAERFRDTKGIIVNTFSD 222
Query: 227 LEEPILSHIR---TKCPKVYTIGPLHLQLKTRFAXXXXXXXXXXXXXXXWEVDRS----C 279
LE+ + + K P +Y +GPL L LK + ++D++
Sbjct: 223 LEQSSIDALYDHDEKIPPIYAVGPL-LDLKGQ---------------PNPKLDQAQHDLI 266
Query: 280 IEWLGKQPVRSVLYVSFGSITL-LKREQLIEFWHGLVDSKQRFLWVIRPD-SVIGEGDAL 337
++WL +QP +SV+++ FGS+ + Q+ E GL S RFLW + V EG
Sbjct: 267 LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLE 326
Query: 338 AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQ 397
+EG +G++ W PQ EVLAH+A+ GF++H GWNS LES+ GVP++ WP +A+QQ
Sbjct: 327 WMELEG---KGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 398 INSRFVSEVWNLGLDMK-------DVCDRNVVEKMVNDLMVERKEEFXXXXXXXXXXXXX 450
+N+ + + W +GL ++ DV +EK + DLM ++
Sbjct: 384 LNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM-DKDSIVHKKVQEMKEMSRN 442
Query: 451 XXNEGGPSYCNLDRLIDDI 469
+GG S ++ +LIDDI
Sbjct: 443 AVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/499 (24%), Positives = 215/499 (43%), Gaps = 70/499 (14%)
Query: 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRF 60
M + K+ ++ P P H+ S L+ A++ NH++ + T +F
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLL-------------TNHDKNLYITVFCIKF 49
Query: 61 --LQYSEFQFKTISDGLPA----DHPRAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSC 114
+ +++ K++ P D P E+ S L+ ++ +
Sbjct: 50 PGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKT 109
Query: 115 IIGDACMEFV--------VDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAY 166
I+ + + V +DV E IP F + + S+ ++ ++
Sbjct: 110 ILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNV----GFLSLMLSLKNRQIEEVFD 165
Query: 167 DEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFED 226
D D D + +PG+ + LP C D ++ +I+NTF D
Sbjct: 166 DSDRDHQLLNIPGISNQVPSNVLPDACFNK---DGGYIAYYKLAERFRDTKGIIVNTFSD 222
Query: 227 LEEPILSHIR---TKCPKVYTIGPLHLQLKTRFAXXXXXXXXXXXXXXXWEVDRS----C 279
LE+ + + K P +Y +GPL L LK + ++D++
Sbjct: 223 LEQSSIDALYDHDEKIPPIYAVGPL-LDLKGQ---------------PNPKLDQAQHDLI 266
Query: 280 IEWLGKQPVRSVLYVSFGSITL-LKREQLIEFWHGLVDSKQRFLWVIRPD-SVIGEGDAL 337
++WL +QP +SV+++ FGS+ + Q+ E GL S RFLW + V EG
Sbjct: 267 LKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLE 326
Query: 338 AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQ 397
+EG +G++ W PQ EVLAH+A+ GF++H GWNS LES+ GVP++ WP +A+QQ
Sbjct: 327 WMELEG---KGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 398 INSRFVSEVWNLGLDMK-------DVCDRNVVEKMVNDLMVERKEEFXXXXXXXXXXXXX 450
+N+ + + W +GL ++ DV +EK + DLM ++
Sbjct: 384 LNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM-DKDSIVHKKVQEMKEMSRN 442
Query: 451 XXNEGGPSYCNLDRLIDDI 469
+GG S ++ +LIDDI
Sbjct: 443 AVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 350 LVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQIN 399
L W+PQ ++L H F+TH G N E+I G+P + P FADQ N
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 353 WVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLD 412
WVPQ ++L + F+TH+G ST+E++ VPM+ P A+Q +N+ + E LGL
Sbjct: 312 WVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE---LGLG 366
Query: 413 MKDVCDRNVVEKM 425
D+ EK+
Sbjct: 367 RHIPRDQVTAEKL 379
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 353 WVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGL- 411
W+P VLAH LTH + LE+ AGVP++ P+FA + S V LGL
Sbjct: 288 WIPFHSVLAHARAC--LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPS--AERVIELGLG 343
Query: 412 ------DMKDVCDRNVVEKMVND 428
++ R VE++ D
Sbjct: 344 SVLRPDQLEPASIREAVERLAAD 366
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 282 WLG-KQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPD-SVIGEGDALAE 339
WL + R ++Y++ G+ + E L GL L P V G G+ A
Sbjct: 234 WLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPAN 293
Query: 340 LVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQ 396
+ L SWVPQ +L H V + H G +TL ++ AGVP + +P+ D
Sbjct: 294 V--------RLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 353 WVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLD 412
WVPQ +L + F+TH+G + E + PMI P DQ N+ + LG+
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ---GLGVA 344
Query: 413 MKDVCD-------RNVVEKMVNDLMVERK 434
K + R +V+D V R+
Sbjct: 345 RKLATEEATADLLRETALALVDDPEVARR 373
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 287 PVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDA-LAELVEGTK 345
P R + ++ G+I +L F G V+ + D V+ GD ++ L GT
Sbjct: 230 PARPEVAITMGTI------ELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPL--GTL 281
Query: 346 ERGL-LVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQ-QINSRFV 403
R + V W P +L + + H G + + +I AG+P + P DQ Q +R
Sbjct: 282 PRNVRAVGWTPLHTLL--RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREA 339
Query: 404 SEVWNLGL-DMKDVCDRNVVEKMVND 428
+GL D D +++ +++ D
Sbjct: 340 VSRRGIGLVSTSDKVDADLLRRLIGD 365
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 353 WVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEV 406
WVP +VL V +TH G + E++ G P++ P D Q +R V ++
Sbjct: 304 WVPHVKVLEQATVC--VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 353 WVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEV 406
WVP +VL V +TH G + E++ G P++ P D Q +R V ++
Sbjct: 304 WVPHVKVLEQATVC--VTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 351 VSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQ-QINSRFVSEVWNL 409
V W P +L + + H G + +I AG+P + P DQ Q +R +
Sbjct: 288 VGWTPLHTLL--RTCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGI 345
Query: 410 GL-DMKDVCDRNVVEKMVND 428
GL D D +++ +++ D
Sbjct: 346 GLVSTSDKVDADLLRRLIGD 365
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 350 LVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNL 409
+V W+P +L + + H G + L ++ AGVP P+ + Q N R V +
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLTGLGI 348
Query: 410 GLDMK 414
G D +
Sbjct: 349 GFDAE 353
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 350 LVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNL 409
+V W+P +L + + H G + L ++ AGVP P+ + Q N R V +
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLTGLGI 348
Query: 410 GLDMK 414
G D +
Sbjct: 349 GFDAE 353
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 336 ALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLT-HSGWNSTLESIVAG--VPMICWPY 392
A + L++ +ERG LV+ V EE LA + G + + G++ T +S+ G VP++C
Sbjct: 2 ASSNLIKQLQERG-LVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKR 60
Query: 393 F 393
F
Sbjct: 61 F 61
>pdb|2ICP|A Chain A, Crystal Structure Of The Bacterial Antitoxin Higa From
Escherichia Coli At Ph 4.0. Northeast Structural
Genomics Consortium Target Er390.
pdb|2ICT|A Chain A, Crystal Structure Of The Bacterial Antitoxin Higa From
Escherichia Coli At Ph 8.5. Northeast Structural
Genomics Target Er390
Length = 94
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 77 ADHPRAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACM 121
A+HPR GD + E D L+++ R + I S + G A +
Sbjct: 4 ANHPRPGDIIQESLDELNVSLREFARAXEIAPSTASRLLTGKAAL 48
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 282 WLGKQPVRSVLYVSFGS-ITLLKREQLIEFWHGLVDSKQRF---LWVIRPDSVIGEGDAL 337
W+ + R + V+ GS + ++ +F GL R+ L V PD+V +AL
Sbjct: 203 WMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTV---AEAL 259
Query: 338 AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQ 397
V + V W P + V + + H+G STL + AGVP + P + +
Sbjct: 260 RAEVPQAR-----VGWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVLE 312
Query: 398 INSRFVSE 405
+R V++
Sbjct: 313 APARRVAD 320
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 340 LVEGTKERGLLVSWVPQEEVLAHQAVAGFLT-HSGWNSTLESIVAG--VPMICWPYF 393
L++ +ERG LV+ V EE LA + G + + G++ T +S+ G VP++C F
Sbjct: 2 LIKQLQERG-LVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRF 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,024,075
Number of Sequences: 62578
Number of extensions: 499749
Number of successful extensions: 1090
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 30
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)