Query 011832
Match_columns 476
No_of_seqs 133 out of 1305
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.2E-67 1.8E-71 518.1 46.4 440 1-471 1-450 (451)
2 PLN02555 limonoid glucosyltran 100.0 6.9E-66 1.5E-70 513.1 46.6 455 1-473 1-471 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 3.9E-65 8.5E-70 507.7 44.8 436 4-470 3-448 (448)
4 PLN02207 UDP-glycosyltransfera 100.0 1.5E-64 3.3E-69 501.2 44.4 443 6-473 2-467 (468)
5 PLN02210 UDP-glucosyl transfer 100.0 6E-64 1.3E-68 499.6 45.9 439 4-470 5-454 (456)
6 PLN02173 UDP-glucosyl transfer 100.0 5E-64 1.1E-68 495.7 43.6 431 6-470 4-447 (449)
7 PLN02152 indole-3-acetate beta 100.0 1.1E-63 2.4E-68 494.1 43.3 432 7-469 3-454 (455)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.5E-63 7.6E-68 495.5 46.5 451 5-473 7-473 (477)
9 PLN02448 UDP-glycosyltransfera 100.0 9.6E-63 2.1E-67 494.3 44.9 439 4-472 7-458 (459)
10 PLN02554 UDP-glycosyltransfera 100.0 8.9E-63 1.9E-67 496.3 43.5 442 7-472 2-479 (481)
11 PLN02992 coniferyl-alcohol glu 100.0 1.6E-62 3.4E-67 487.7 44.6 431 6-472 4-470 (481)
12 PLN02670 transferase, transfer 100.0 3.5E-62 7.5E-67 484.9 42.9 445 4-473 3-467 (472)
13 PLN02534 UDP-glycosyltransfera 100.0 9E-62 2E-66 484.2 45.0 450 3-473 4-488 (491)
14 PLN00164 glucosyltransferase; 100.0 7.1E-62 1.5E-66 487.8 44.5 439 6-472 2-474 (480)
15 PLN03007 UDP-glucosyltransfera 100.0 3.8E-61 8.2E-66 485.2 45.3 447 5-471 3-480 (482)
16 PLN02167 UDP-glycosyltransfera 100.0 2.4E-61 5.2E-66 485.2 42.0 447 5-474 1-475 (475)
17 PLN03004 UDP-glycosyltransfera 100.0 2.8E-61 6E-66 476.5 41.0 428 6-460 2-450 (451)
18 PLN03015 UDP-glucosyl transfer 100.0 1.1E-60 2.4E-65 471.7 44.7 436 7-469 3-466 (470)
19 PLN02208 glycosyltransferase f 100.0 5.8E-61 1.2E-65 475.1 41.6 417 4-472 1-440 (442)
20 PLN02764 glycosyltransferase f 100.0 2.7E-60 5.8E-65 467.6 43.6 425 6-475 4-449 (453)
21 PLN00414 glycosyltransferase f 100.0 1.7E-59 3.6E-64 465.2 43.0 418 4-473 1-442 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.7E-56 8.1E-61 449.4 25.5 417 6-473 19-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.8E-57 6.1E-62 465.6 -1.7 391 9-451 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 2.6E-42 5.6E-47 343.8 30.9 373 13-469 1-389 (392)
25 KOG1192 UDP-glucuronosyl and U 100.0 1.4E-43 3.1E-48 364.1 20.3 406 7-450 5-438 (496)
26 cd03784 GT1_Gtf_like This fami 100.0 8E-43 1.7E-47 349.0 23.9 380 8-468 1-400 (401)
27 COG1819 Glycosyl transferases, 100.0 5.8E-41 1.3E-45 330.1 20.6 391 7-472 1-401 (406)
28 PRK12446 undecaprenyldiphospho 99.9 8.2E-23 1.8E-27 198.9 29.3 318 9-443 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.1E-23 4.5E-28 202.1 24.7 302 8-429 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 5.6E-21 1.2E-25 184.8 22.6 125 289-438 188-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 5E-20 1.1E-24 177.2 28.7 321 8-450 1-337 (357)
32 PRK00726 murG undecaprenyldiph 99.8 1.8E-17 3.8E-22 163.3 29.6 342 8-468 2-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 8.3E-16 1.8E-20 151.0 29.0 311 9-432 1-324 (350)
34 TIGR01133 murG undecaprenyldip 99.7 3.8E-14 8.2E-19 139.1 30.3 88 355-450 243-334 (348)
35 PRK13609 diacylglycerol glucos 99.7 2.3E-14 4.9E-19 142.4 28.6 168 288-471 201-371 (380)
36 TIGR00215 lpxB lipid-A-disacch 99.7 1.1E-14 2.4E-19 143.9 25.0 351 8-467 6-384 (385)
37 COG4671 Predicted glycosyl tra 99.6 2.4E-14 5.3E-19 131.4 18.7 342 4-431 6-364 (400)
38 TIGR03590 PseG pseudaminic aci 99.6 1.8E-13 3.9E-18 129.1 22.9 105 290-402 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.5 1.8E-12 4E-17 128.8 24.2 348 7-467 1-373 (380)
40 PRK13608 diacylglycerol glucos 99.5 1.8E-12 3.9E-17 128.9 23.9 167 288-474 201-374 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 1.9E-15 4.1E-20 131.8 -0.7 134 291-432 1-144 (167)
42 PLN02605 monogalactosyldiacylg 99.4 9.8E-11 2.1E-15 116.3 26.2 110 346-466 265-376 (382)
43 cd03814 GT1_like_2 This family 99.3 8.3E-09 1.8E-13 101.2 32.8 155 290-468 197-362 (364)
44 PF03033 Glyco_transf_28: Glyc 99.3 1.5E-12 3.2E-17 109.8 2.4 122 10-143 1-132 (139)
45 TIGR03492 conserved hypothetic 99.2 5.6E-09 1.2E-13 103.5 25.9 333 17-441 6-371 (396)
46 PLN02871 UDP-sulfoquinovose:DA 99.2 3.8E-08 8.3E-13 100.4 32.0 126 291-432 264-400 (465)
47 cd03823 GT1_ExpE7_like This fa 99.2 6.7E-08 1.5E-12 94.5 31.2 130 288-432 189-329 (359)
48 cd03818 GT1_ExpC_like This fam 99.1 3.4E-07 7.4E-12 91.5 32.8 80 345-432 280-366 (396)
49 TIGR00236 wecB UDP-N-acetylglu 99.1 2.5E-08 5.3E-13 98.6 24.2 136 290-441 198-341 (365)
50 cd03817 GT1_UGDG_like This fam 99.1 2.1E-07 4.6E-12 91.4 30.5 131 289-432 201-343 (374)
51 COG3980 spsG Spore coat polysa 99.1 3.4E-08 7.5E-13 88.7 21.4 147 289-446 158-305 (318)
52 cd03816 GT1_ALG1_like This fam 99.1 3.3E-07 7.2E-12 92.0 30.6 130 288-432 230-381 (415)
53 cd04962 GT1_like_5 This family 99.1 5.8E-07 1.3E-11 88.8 32.0 129 290-432 197-336 (371)
54 cd03800 GT1_Sucrose_synthase T 99.1 4.1E-07 8.9E-12 90.7 31.0 133 290-432 220-368 (398)
55 cd03794 GT1_wbuB_like This fam 99.1 2.2E-07 4.8E-12 91.6 28.3 130 289-432 219-365 (394)
56 PRK10307 putative glycosyl tra 99.0 1.1E-06 2.4E-11 88.4 33.0 165 290-471 229-407 (412)
57 cd03808 GT1_cap1E_like This fa 99.0 6.2E-07 1.3E-11 87.3 30.5 312 9-432 1-329 (359)
58 cd03825 GT1_wcfI_like This fam 99.0 3.2E-07 6.9E-12 90.3 28.4 114 344-470 242-363 (365)
59 cd03801 GT1_YqgM_like This fam 99.0 9.3E-07 2E-11 86.2 31.5 161 289-468 198-372 (374)
60 PF04007 DUF354: Protein of un 99.0 1.6E-06 3.5E-11 83.0 29.0 300 8-430 1-308 (335)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 1.9E-07 4.1E-12 92.2 23.1 133 288-432 197-337 (363)
62 cd03821 GT1_Bme6_like This fam 99.0 1.8E-06 4E-11 84.6 30.1 131 289-432 202-345 (375)
63 TIGR03449 mycothiol_MshA UDP-N 98.9 3E-06 6.4E-11 85.0 31.5 81 344-432 281-368 (405)
64 cd03805 GT1_ALG2_like This fam 98.9 1.9E-06 4.2E-11 85.8 29.3 80 344-432 278-364 (392)
65 cd03798 GT1_wlbH_like This fam 98.9 3.1E-06 6.7E-11 82.8 30.0 132 289-432 201-344 (377)
66 PRK05749 3-deoxy-D-manno-octul 98.9 1.3E-06 2.8E-11 88.2 27.5 81 347-432 303-388 (425)
67 cd03796 GT1_PIG-A_like This fa 98.9 1E-05 2.2E-10 80.9 31.9 128 289-432 192-333 (398)
68 cd03795 GT1_like_4 This family 98.9 2.7E-06 5.9E-11 83.3 27.1 131 290-432 191-332 (357)
69 cd03820 GT1_amsD_like This fam 98.8 4.9E-06 1.1E-10 80.6 28.4 90 344-443 233-328 (348)
70 cd05844 GT1_like_7 Glycosyltra 98.8 8E-06 1.7E-10 80.5 29.4 81 344-432 243-336 (367)
71 TIGR02472 sucr_P_syn_N sucrose 98.8 1.2E-05 2.7E-10 81.4 30.8 163 291-468 249-437 (439)
72 TIGR02468 sucrsPsyn_pln sucros 98.8 1.7E-05 3.8E-10 85.6 32.9 143 278-432 469-637 (1050)
73 cd03802 GT1_AviGT4_like This f 98.8 4.9E-06 1.1E-10 80.8 26.6 127 292-432 173-308 (335)
74 cd03799 GT1_amsK_like This is 98.8 1.4E-05 3E-10 78.3 28.6 130 289-432 178-327 (355)
75 cd03819 GT1_WavL_like This fam 98.7 4.8E-05 1E-09 74.5 31.5 138 288-431 183-329 (355)
76 cd03807 GT1_WbnK_like This fam 98.7 9.5E-05 2.1E-09 72.1 32.0 128 289-432 192-332 (365)
77 cd04951 GT1_WbdM_like This fam 98.7 1.6E-05 3.4E-10 78.1 26.1 136 289-442 187-335 (360)
78 cd03822 GT1_ecORF704_like This 98.7 5E-05 1.1E-09 74.4 28.9 109 344-467 245-363 (366)
79 PRK09922 UDP-D-galactose:(gluc 98.6 3E-05 6.5E-10 76.4 27.1 130 291-432 181-324 (359)
80 PRK14089 ipid-A-disaccharide s 98.6 2.1E-05 4.6E-10 76.0 24.8 145 290-448 168-332 (347)
81 cd03811 GT1_WabH_like This fam 98.6 1.6E-05 3.6E-10 76.9 24.3 131 288-432 187-332 (353)
82 cd04955 GT1_like_6 This family 98.6 3.5E-05 7.7E-10 75.6 26.8 153 293-468 196-361 (363)
83 TIGR02470 sucr_synth sucrose s 98.6 0.00029 6.2E-09 74.7 34.4 130 291-430 551-707 (784)
84 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 2.4E-05 5.2E-10 77.0 24.7 128 289-431 201-338 (365)
85 PLN02949 transferase, transfer 98.6 0.00026 5.5E-09 71.8 32.1 113 344-472 333-457 (463)
86 PLN02846 digalactosyldiacylgly 98.6 6.5E-05 1.4E-09 75.3 27.0 124 292-432 230-363 (462)
87 TIGR02149 glgA_Coryne glycogen 98.5 0.00043 9.4E-09 68.8 31.4 167 290-470 201-385 (388)
88 PRK15427 colanic acid biosynth 98.5 0.00029 6.3E-09 70.5 29.5 162 290-470 222-404 (406)
89 PF02350 Epimerase_2: UDP-N-ac 98.5 1.9E-06 4.2E-11 83.8 13.3 256 98-443 56-327 (346)
90 PLN02275 transferase, transfer 98.5 0.00059 1.3E-08 67.5 30.9 75 346-430 286-371 (371)
91 cd03806 GT1_ALG11_like This fa 98.5 0.00062 1.3E-08 68.5 31.3 80 344-432 303-392 (419)
92 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.0005 1.1E-08 66.4 28.0 306 11-432 52-386 (419)
93 cd03809 GT1_mtfB_like This fam 98.4 8.3E-05 1.8E-09 72.8 23.9 87 344-442 251-344 (365)
94 PRK00654 glgA glycogen synthas 98.4 0.00051 1.1E-08 70.2 30.0 135 289-431 281-427 (466)
95 cd03812 GT1_CapH_like This fam 98.4 0.00033 7.2E-09 68.6 27.9 136 289-441 191-338 (358)
96 cd03792 GT1_Trehalose_phosphor 98.4 0.00045 9.7E-09 68.4 28.4 164 290-470 190-370 (372)
97 PLN00142 sucrose synthase 98.4 0.00029 6.4E-09 74.7 27.8 79 344-430 640-730 (815)
98 TIGR03087 stp1 sugar transfera 98.4 5.2E-05 1.1E-09 75.8 21.2 109 345-468 279-393 (397)
99 TIGR02095 glgA glycogen/starch 98.4 0.00075 1.6E-08 69.2 29.9 165 290-470 291-471 (473)
100 KOG3349 Predicted glycosyltran 98.3 3.3E-06 7.1E-11 68.6 7.6 117 290-413 4-132 (170)
101 PLN02316 synthase/transferase 98.2 0.003 6.4E-08 69.0 31.5 171 291-471 841-1033(1036)
102 PRK01021 lpxB lipid-A-disaccha 98.2 0.00095 2.1E-08 68.2 26.1 177 281-469 405-603 (608)
103 TIGR03088 stp2 sugar transfera 98.2 0.0017 3.7E-08 64.2 27.7 164 288-470 192-371 (374)
104 PRK15179 Vi polysaccharide bio 98.2 0.0046 9.9E-08 65.5 31.2 160 290-468 517-690 (694)
105 COG0381 WecB UDP-N-acetylgluco 98.2 0.0008 1.7E-08 64.5 22.7 158 288-467 203-370 (383)
106 cd03791 GT1_Glycogen_synthase_ 98.1 0.0022 4.8E-08 65.8 27.3 135 289-431 295-441 (476)
107 PF02684 LpxB: Lipid-A-disacch 98.1 0.0028 6E-08 61.9 25.3 165 287-461 182-367 (373)
108 PF13844 Glyco_transf_41: Glyc 98.0 0.0004 8.6E-09 69.1 16.9 142 287-432 282-430 (468)
109 PRK15484 lipopolysaccharide 1, 97.9 0.0007 1.5E-08 67.2 18.3 166 291-471 194-377 (380)
110 PF00534 Glycos_transf_1: Glyc 97.9 0.00073 1.6E-08 58.7 15.4 132 288-432 13-158 (172)
111 PLN02501 digalactosyldiacylgly 97.8 0.022 4.8E-07 59.2 26.9 123 291-432 549-681 (794)
112 cd03804 GT1_wbaZ_like This fam 97.8 0.00018 4E-09 70.5 11.1 126 292-432 197-326 (351)
113 COG0763 LpxB Lipid A disacchar 97.7 0.039 8.5E-07 53.1 24.9 177 278-469 177-379 (381)
114 cd04950 GT1_like_1 Glycosyltra 97.7 0.063 1.4E-06 53.1 29.3 78 345-432 253-340 (373)
115 cd04946 GT1_AmsK_like This fam 97.7 0.0016 3.4E-08 65.4 16.5 163 290-466 230-406 (407)
116 cd03813 GT1_like_3 This family 97.7 0.014 3.1E-07 59.7 23.4 134 289-432 292-442 (475)
117 COG5017 Uncharacterized conser 97.5 0.00081 1.8E-08 53.9 8.5 124 292-431 2-141 (161)
118 PRK09814 beta-1,6-galactofuran 97.4 0.0012 2.5E-08 64.4 9.9 112 344-467 205-331 (333)
119 KOG4626 O-linked N-acetylgluco 97.1 0.006 1.3E-07 61.3 11.2 126 287-415 756-889 (966)
120 TIGR02918 accessory Sec system 97.0 0.028 6E-07 57.8 16.4 146 291-447 320-483 (500)
121 PRK10125 putative glycosyl tra 97.0 0.46 1E-05 47.6 28.2 115 292-427 243-366 (405)
122 cd01635 Glycosyltransferase_GT 96.9 0.083 1.8E-06 47.4 17.2 51 344-396 159-217 (229)
123 PRK14098 glycogen synthase; Pr 96.7 0.055 1.2E-06 55.6 15.7 167 290-471 307-485 (489)
124 PHA01633 putative glycosyl tra 96.7 0.027 5.9E-07 54.3 12.4 85 344-431 199-306 (335)
125 cd04949 GT1_gtfA_like This fam 96.7 0.025 5.5E-07 55.8 12.8 131 291-432 205-345 (372)
126 PF13692 Glyco_trans_1_4: Glyc 96.7 0.0084 1.8E-07 49.6 7.9 80 345-432 52-135 (135)
127 PRK10017 colanic acid biosynth 96.6 0.12 2.7E-06 51.7 16.6 178 280-471 225-424 (426)
128 PF13477 Glyco_trans_4_2: Glyc 96.5 0.051 1.1E-06 45.1 11.8 103 9-140 1-107 (139)
129 PRK15490 Vi polysaccharide bio 96.4 0.24 5.1E-06 50.8 17.6 117 344-470 453-574 (578)
130 COG3914 Spy Predicted O-linked 96.2 0.12 2.5E-06 52.1 13.6 124 287-414 427-561 (620)
131 PF06722 DUF1205: Protein of u 96.0 0.015 3.3E-07 44.8 5.3 65 277-349 28-97 (97)
132 COG1817 Uncharacterized protei 96.0 1.4 3E-05 41.3 23.1 113 8-142 1-114 (346)
133 PF13524 Glyco_trans_1_2: Glyc 95.8 0.076 1.6E-06 40.6 8.4 83 371-467 9-92 (92)
134 PF13579 Glyco_trans_4_4: Glyc 95.7 0.02 4.4E-07 48.4 5.6 97 23-140 6-104 (160)
135 TIGR02193 heptsyl_trn_I lipopo 95.6 2.3 5.1E-05 40.9 19.8 130 288-430 178-319 (319)
136 PF01975 SurE: Survival protei 95.2 0.14 3E-06 45.3 8.9 118 8-141 1-134 (196)
137 PLN02939 transferase, transfer 94.6 1.5 3.3E-05 47.9 16.3 135 291-431 780-930 (977)
138 PHA01630 putative group 1 glyc 94.5 0.58 1.2E-05 45.4 12.1 110 352-470 196-329 (331)
139 TIGR02201 heptsyl_trn_III lipo 94.4 5.4 0.00012 38.9 21.2 97 288-390 180-285 (344)
140 PRK10916 ADP-heptose:LPS hepto 94.3 5.7 0.00012 38.8 20.9 95 288-390 179-286 (348)
141 KOG2941 Beta-1,4-mannosyltrans 93.6 7.1 0.00015 37.3 22.7 130 3-145 8-142 (444)
142 TIGR02400 trehalose_OtsA alpha 93.3 4.6 0.0001 41.1 16.5 104 351-470 341-455 (456)
143 COG0859 RfaF ADP-heptose:LPS h 93.2 8.7 0.00019 37.3 18.9 95 289-390 175-276 (334)
144 PF06258 Mito_fiss_Elm1: Mitoc 92.7 9.6 0.00021 36.5 17.5 57 355-414 221-281 (311)
145 cd03788 GT1_TPS Trehalose-6-Ph 92.5 2.4 5.3E-05 43.2 13.2 105 350-469 345-459 (460)
146 PF12000 Glyco_trans_4_3: Gkyc 92.3 2.3 5E-05 36.6 10.9 93 33-140 1-96 (171)
147 PRK13932 stationary phase surv 92.0 2.6 5.5E-05 39.0 11.4 119 4-140 2-133 (257)
148 COG0496 SurE Predicted acid ph 91.6 2.2 4.7E-05 39.1 10.2 113 8-141 1-126 (252)
149 PRK13933 stationary phase surv 91.3 3.2 6.9E-05 38.3 11.2 115 8-140 1-129 (253)
150 TIGR03713 acc_sec_asp1 accesso 91.3 3.8 8.2E-05 42.4 13.1 74 346-432 409-488 (519)
151 PRK14099 glycogen synthase; Pr 91.2 7 0.00015 40.1 15.0 133 291-430 296-442 (485)
152 PF13439 Glyco_transf_4: Glyco 90.9 1.2 2.7E-05 37.9 8.0 100 17-142 11-111 (177)
153 PRK02261 methylaspartate mutas 89.2 1.1 2.3E-05 37.3 5.8 50 5-54 1-50 (137)
154 COG1618 Predicted nucleotide k 89.2 2.6 5.7E-05 35.7 7.9 42 5-46 3-44 (179)
155 PF08660 Alg14: Oligosaccharid 89.1 3.4 7.4E-05 35.7 9.1 30 111-140 92-129 (170)
156 PLN03063 alpha,alpha-trehalose 89.0 9.9 0.00021 41.7 14.5 100 358-473 371-479 (797)
157 cd03789 GT1_LPS_heptosyltransf 87.9 24 0.00052 33.1 20.2 41 9-49 1-43 (279)
158 TIGR00715 precor6x_red precorr 87.8 4.3 9.4E-05 37.6 9.4 92 8-139 1-99 (256)
159 COG0438 RfaG Glycosyltransfera 87.0 27 0.00058 32.8 17.3 130 291-432 200-342 (381)
160 TIGR02919 accessory Sec system 86.8 16 0.00034 37.0 13.4 136 288-446 282-424 (438)
161 TIGR00087 surE 5'/3'-nucleotid 86.8 9.7 0.00021 35.0 11.0 40 8-50 1-41 (244)
162 cd01425 RPS2 Ribosomal protein 86.3 3.1 6.8E-05 36.8 7.4 113 22-142 43-160 (193)
163 TIGR02195 heptsyl_trn_II lipop 86.0 34 0.00075 33.0 22.3 96 288-390 173-276 (334)
164 PF02951 GSH-S_N: Prokaryotic 85.2 1.5 3.2E-05 35.3 4.2 37 8-44 1-40 (119)
165 PRK13935 stationary phase surv 85.0 16 0.00034 33.8 11.4 40 8-49 1-40 (253)
166 PF05159 Capsule_synth: Capsul 84.5 5.5 0.00012 37.3 8.6 82 307-392 143-226 (269)
167 cd02067 B12-binding B12 bindin 83.2 2.3 5E-05 34.2 4.7 44 9-52 1-44 (119)
168 PRK13934 stationary phase surv 82.7 23 0.00049 33.0 11.4 40 8-49 1-40 (266)
169 PRK00346 surE 5'(3')-nucleotid 82.7 21 0.00047 32.9 11.3 111 8-140 1-124 (250)
170 COG2910 Putative NADH-flavin r 81.1 1.9 4.2E-05 37.2 3.5 33 8-44 1-33 (211)
171 cd03793 GT1_Glycogen_synthase_ 80.4 5.3 0.00011 41.4 7.1 73 355-431 467-551 (590)
172 PRK10422 lipopolysaccharide co 80.1 26 0.00057 34.2 11.8 96 289-390 183-287 (352)
173 PF04464 Glyphos_transf: CDP-G 79.4 3.6 7.7E-05 40.5 5.5 108 345-463 251-365 (369)
174 PRK14501 putative bifunctional 79.4 35 0.00076 37.1 13.5 112 350-473 346-464 (726)
175 COG2894 MinD Septum formation 78.5 9.9 0.00021 34.0 7.1 42 9-50 3-46 (272)
176 PF02571 CbiJ: Precorrin-6x re 78.4 9.4 0.0002 35.3 7.5 94 8-140 1-101 (249)
177 PRK02797 4-alpha-L-fucosyltran 78.2 59 0.0013 30.9 12.6 81 346-431 206-293 (322)
178 PF00551 Formyl_trans_N: Formy 77.7 16 0.00034 31.9 8.5 106 8-141 1-110 (181)
179 PF02441 Flavoprotein: Flavopr 77.7 3 6.6E-05 34.1 3.7 38 8-46 1-38 (129)
180 COG0052 RpsB Ribosomal protein 77.5 29 0.00064 31.6 10.0 32 111-142 156-189 (252)
181 PRK13931 stationary phase surv 77.5 23 0.00051 32.9 9.8 98 24-140 16-129 (261)
182 PRK12311 rpsB 30S ribosomal pr 76.9 10 0.00022 36.4 7.4 33 110-142 151-185 (326)
183 PRK08305 spoVFB dipicolinate s 76.8 4.3 9.2E-05 35.9 4.5 42 4-45 2-43 (196)
184 COG1703 ArgK Putative periplas 75.4 56 0.0012 30.9 11.5 42 5-46 49-90 (323)
185 cd00561 CobA_CobO_BtuR ATP:cor 74.9 35 0.00076 29.1 9.5 103 9-122 4-106 (159)
186 PRK05986 cob(I)alamin adenolsy 74.4 31 0.00067 30.3 9.2 106 6-122 21-126 (191)
187 COG0003 ArsA Predicted ATPase 74.1 26 0.00057 33.7 9.5 39 8-46 2-41 (322)
188 PRK13789 phosphoribosylamine-- 72.8 5.7 0.00012 40.0 5.0 37 5-46 2-38 (426)
189 PRK14099 glycogen synthase; Pr 72.3 6.6 0.00014 40.3 5.4 40 6-45 2-47 (485)
190 PRK10964 ADP-heptose:LPS hepto 72.0 20 0.00043 34.5 8.4 130 290-431 179-321 (322)
191 PRK12342 hypothetical protein; 71.5 29 0.00063 32.1 8.8 41 99-141 99-145 (254)
192 PF02310 B12-binding: B12 bind 71.2 11 0.00024 30.1 5.5 44 9-52 2-45 (121)
193 PF04127 DFP: DNA / pantothena 70.9 3.9 8.4E-05 35.9 2.9 39 7-45 3-53 (185)
194 smart00851 MGS MGS-like domain 70.1 44 0.00095 25.1 8.4 79 24-136 2-89 (90)
195 PF01075 Glyco_transf_9: Glyco 69.8 21 0.00046 32.6 7.8 97 288-390 104-208 (247)
196 COG4370 Uncharacterized protei 69.7 18 0.00039 34.0 6.9 91 347-443 295-388 (412)
197 KOG1111 N-acetylglucosaminyltr 68.8 84 0.0018 30.6 11.2 75 312-390 219-301 (426)
198 PRK06849 hypothetical protein; 66.9 11 0.00024 37.4 5.6 38 4-45 1-38 (389)
199 PRK02155 ppnK NAD(+)/NADH kina 66.6 20 0.00042 34.1 6.8 57 358-432 59-119 (291)
200 cd02070 corrinoid_protein_B12- 66.5 14 0.0003 32.9 5.6 48 6-53 81-128 (201)
201 TIGR00708 cobA cob(I)alamin ad 66.4 79 0.0017 27.3 9.9 103 8-122 6-108 (173)
202 PF12146 Hydrolase_4: Putative 66.0 14 0.00031 27.1 4.7 38 7-44 15-52 (79)
203 cd01423 MGS_CPS_I_III Methylgl 65.3 55 0.0012 26.0 8.4 86 20-136 11-105 (116)
204 COG1797 CobB Cobyrinic acid a, 65.0 52 0.0011 32.8 9.4 112 9-147 2-126 (451)
205 PRK06732 phosphopantothenate-- 64.7 8.7 0.00019 35.0 4.0 36 8-43 1-48 (229)
206 cd00532 MGS-like MGS-like doma 64.6 63 0.0014 25.5 8.5 85 20-138 10-105 (112)
207 PF02844 GARS_N: Phosphoribosy 64.4 20 0.00044 27.8 5.3 88 8-137 1-91 (100)
208 TIGR02370 pyl_corrinoid methyl 64.4 16 0.00035 32.3 5.6 49 6-54 83-131 (197)
209 PF01210 NAD_Gly3P_dh_N: NAD-d 64.3 5 0.00011 34.1 2.2 32 9-45 1-32 (157)
210 COG1484 DnaC DNA replication p 63.9 11 0.00024 35.0 4.5 45 6-50 104-148 (254)
211 TIGR01007 eps_fam capsular exo 63.9 1E+02 0.0023 27.1 11.1 39 8-46 17-57 (204)
212 PRK06249 2-dehydropantoate 2-r 63.8 11 0.00024 36.1 4.8 36 5-45 3-38 (313)
213 cd00550 ArsA_ATPase Oxyanion-t 63.3 32 0.00069 31.9 7.6 42 11-53 4-45 (254)
214 PRK06718 precorrin-2 dehydroge 63.2 56 0.0012 29.1 8.8 143 288-451 10-165 (202)
215 TIGR01470 cysG_Nterm siroheme 63.1 1.1E+02 0.0023 27.3 10.6 145 288-450 9-164 (205)
216 PF02142 MGS: MGS-like domain 62.4 14 0.0003 28.3 4.2 84 24-136 2-94 (95)
217 TIGR03029 EpsG chain length de 62.3 93 0.002 29.0 10.7 39 6-44 101-141 (274)
218 cd02071 MM_CoA_mut_B12_BD meth 60.7 19 0.00041 29.0 4.9 43 9-51 1-43 (122)
219 KOG0832 Mitochondrial/chloropl 60.3 8 0.00017 34.5 2.7 116 17-143 90-207 (251)
220 PRK05299 rpsB 30S ribosomal pr 59.7 35 0.00076 31.7 7.0 33 110-142 156-190 (258)
221 PRK00090 bioD dithiobiotin syn 59.6 1E+02 0.0022 27.6 10.1 33 10-42 2-35 (222)
222 COG2185 Sbm Methylmalonyl-CoA 58.8 21 0.00045 29.7 4.7 45 6-50 11-55 (143)
223 TIGR00347 bioD dethiobiotin sy 58.6 1.1E+02 0.0024 25.9 9.7 27 15-41 6-32 (166)
224 PF06925 MGDG_synth: Monogalac 58.2 28 0.00061 29.8 5.9 47 92-140 72-124 (169)
225 PRK14619 NAD(P)H-dependent gly 57.7 13 0.00028 35.6 4.0 34 5-43 2-35 (308)
226 PRK06522 2-dehydropantoate 2-r 57.6 13 0.00029 35.3 4.1 31 8-43 1-31 (304)
227 PRK01077 cobyrinic acid a,c-di 57.1 45 0.00097 33.9 7.9 107 9-142 5-124 (451)
228 PF05693 Glycogen_syn: Glycoge 56.4 34 0.00073 35.7 6.7 91 354-447 461-565 (633)
229 PRK10422 lipopolysaccharide co 56.0 84 0.0018 30.6 9.5 43 7-49 5-49 (352)
230 COG4088 Predicted nucleotide k 55.8 14 0.00029 32.9 3.3 35 10-44 4-38 (261)
231 cd02069 methionine_synthase_B1 55.8 28 0.00061 31.3 5.6 49 6-54 87-135 (213)
232 PRK12921 2-dehydropantoate 2-r 55.1 14 0.00031 35.1 3.8 31 8-43 1-31 (305)
233 PLN02939 transferase, transfer 55.1 24 0.00052 39.0 5.8 43 4-46 478-526 (977)
234 COG1663 LpxK Tetraacyldisaccha 54.6 51 0.0011 31.7 7.2 34 13-46 55-88 (336)
235 PRK01231 ppnK inorganic polyph 54.6 44 0.00096 31.7 6.9 56 359-432 59-118 (295)
236 PRK04885 ppnK inorganic polyph 53.9 11 0.00025 35.0 2.8 53 362-432 35-93 (265)
237 COG0287 TyrA Prephenate dehydr 53.5 1.6E+02 0.0035 27.7 10.4 42 7-53 3-44 (279)
238 PRK09620 hypothetical protein; 53.5 23 0.0005 32.2 4.7 39 6-44 2-52 (229)
239 COG1090 Predicted nucleoside-d 53.5 1.1E+02 0.0024 28.6 8.9 22 25-46 12-33 (297)
240 TIGR01501 MthylAspMutase methy 53.1 36 0.00077 28.1 5.3 47 7-53 1-47 (134)
241 PRK14098 glycogen synthase; Pr 52.2 28 0.0006 35.8 5.6 38 8-45 6-49 (489)
242 TIGR01011 rpsB_bact ribosomal 51.9 36 0.00079 30.9 5.6 34 110-143 154-189 (225)
243 CHL00072 chlL photochlorophyll 51.7 27 0.00059 33.1 5.1 39 8-46 1-39 (290)
244 PRK05920 aromatic acid decarbo 51.2 23 0.00051 31.5 4.2 40 6-46 2-41 (204)
245 COG2109 BtuR ATP:corrinoid ade 50.6 1.7E+02 0.0037 25.7 9.1 104 9-122 30-133 (198)
246 PF02374 ArsA_ATPase: Anion-tr 50.2 29 0.00062 33.2 5.0 40 8-47 1-41 (305)
247 cd07039 TPP_PYR_POX Pyrimidine 50.2 1.6E+02 0.0035 25.1 9.7 27 366-392 65-97 (164)
248 TIGR02015 BchY chlorophyllide 50.1 1.1E+02 0.0024 30.7 9.4 94 9-139 287-380 (422)
249 PRK11199 tyrA bifunctional cho 50.1 1.6E+02 0.0034 29.1 10.3 35 5-44 96-131 (374)
250 PRK14077 pnk inorganic polypho 50.1 16 0.00035 34.5 3.2 57 358-432 60-120 (287)
251 COG0859 RfaF ADP-heptose:LPS h 49.8 93 0.002 30.1 8.6 100 7-141 175-279 (334)
252 TIGR02852 spore_dpaB dipicolin 49.4 24 0.00051 31.0 3.9 38 8-45 1-38 (187)
253 PRK10867 signal recognition pa 49.4 96 0.0021 31.3 8.7 42 7-48 100-142 (433)
254 PRK10964 ADP-heptose:LPS hepto 49.2 1.1E+02 0.0023 29.4 9.0 39 8-46 1-41 (322)
255 cd07038 TPP_PYR_PDC_IPDC_like 49.1 1.6E+02 0.0034 25.0 9.0 26 367-392 62-93 (162)
256 COG0541 Ffh Signal recognition 48.9 89 0.0019 31.2 8.0 43 6-48 99-141 (451)
257 PRK11519 tyrosine kinase; Prov 48.8 2.8E+02 0.006 30.2 12.8 40 6-45 524-565 (719)
258 CHL00067 rps2 ribosomal protei 48.7 45 0.00097 30.4 5.7 34 110-143 160-195 (230)
259 cd01980 Chlide_reductase_Y Chl 48.5 1.2E+02 0.0027 30.3 9.5 32 103-139 344-375 (416)
260 TIGR01281 DPOR_bchL light-inde 48.3 31 0.00067 32.1 4.9 39 8-46 1-39 (268)
261 PRK01911 ppnK inorganic polyph 48.3 19 0.00042 34.1 3.4 57 358-432 60-120 (292)
262 cd02032 Bchl_like This family 48.3 30 0.00065 32.2 4.8 39 8-46 1-39 (267)
263 TIGR00379 cobB cobyrinic acid 48.3 70 0.0015 32.5 7.7 107 10-143 2-121 (449)
264 PF02776 TPP_enzyme_N: Thiamin 48.2 1.6E+02 0.0034 25.2 9.0 62 368-431 68-145 (172)
265 PRK13982 bifunctional SbtC-lik 48.2 26 0.00057 35.6 4.5 41 5-45 254-306 (475)
266 KOG0853 Glycosyltransferase [C 48.1 14 0.00031 37.5 2.6 59 376-443 381-442 (495)
267 PRK02649 ppnK inorganic polyph 48.1 18 0.00038 34.6 3.1 56 359-432 65-124 (305)
268 COG2874 FlaH Predicted ATPases 48.0 25 0.00054 31.5 3.8 40 11-50 32-71 (235)
269 PRK07688 thiamine/molybdopteri 47.3 94 0.002 30.2 8.1 35 5-44 22-57 (339)
270 PRK06719 precorrin-2 dehydroge 46.8 32 0.00069 29.2 4.2 34 6-44 12-45 (157)
271 COG2861 Uncharacterized protei 46.5 1.2E+02 0.0026 27.7 7.8 40 98-138 137-179 (250)
272 PRK14569 D-alanyl-alanine synt 46.3 43 0.00094 31.8 5.6 38 6-43 2-43 (296)
273 cd01424 MGS_CPS_II Methylglyox 46.2 1.4E+02 0.0031 23.3 9.4 84 19-137 10-100 (110)
274 PRK14618 NAD(P)H-dependent gly 46.0 28 0.00061 33.6 4.3 34 6-44 3-36 (328)
275 PRK00207 sulfur transfer compl 46.0 46 0.001 27.1 4.9 36 8-43 1-40 (128)
276 PF00318 Ribosomal_S2: Ribosom 45.9 2E+02 0.0043 25.7 9.5 114 21-142 42-176 (211)
277 TIGR02398 gluc_glyc_Psyn gluco 45.8 3.6E+02 0.0077 27.8 15.4 109 348-471 364-482 (487)
278 PF09314 DUF1972: Domain of un 45.8 2.1E+02 0.0045 25.1 10.7 38 9-46 3-45 (185)
279 PRK06988 putative formyltransf 45.6 2.2E+02 0.0048 27.3 10.3 33 8-45 3-35 (312)
280 PF03721 UDPG_MGDP_dh_N: UDP-g 45.5 32 0.0007 30.1 4.2 37 8-51 1-37 (185)
281 COG2084 MmsB 3-hydroxyisobutyr 45.5 30 0.00065 32.6 4.2 32 8-44 1-32 (286)
282 cd01121 Sms Sms (bacterial rad 45.2 2.5E+02 0.0055 27.7 10.8 41 10-50 85-125 (372)
283 PLN02695 GDP-D-mannose-3',5'-e 44.8 40 0.00086 33.2 5.2 36 4-43 18-53 (370)
284 PF07429 Glyco_transf_56: 4-al 44.8 3.1E+02 0.0066 26.7 12.7 81 346-431 245-332 (360)
285 PRK13011 formyltetrahydrofolat 44.3 2.1E+02 0.0046 27.0 9.7 107 3-140 85-195 (286)
286 PRK10916 ADP-heptose:LPS hepto 44.1 51 0.0011 32.1 5.9 103 8-140 181-288 (348)
287 cd07025 Peptidase_S66 LD-Carbo 44.1 39 0.00085 31.8 4.9 76 301-394 45-122 (282)
288 PF00731 AIRC: AIR carboxylase 44.0 2E+02 0.0042 24.3 12.4 137 291-450 2-148 (150)
289 PLN02470 acetolactate synthase 44.0 1.6E+02 0.0035 31.1 9.9 79 307-391 16-109 (585)
290 PRK08229 2-dehydropantoate 2-r 43.7 25 0.00054 34.1 3.6 32 8-44 3-34 (341)
291 KOG1209 1-Acyl dihydroxyaceton 43.6 34 0.00074 30.6 3.9 37 1-42 1-39 (289)
292 PLN02240 UDP-glucose 4-epimera 43.4 40 0.00086 32.7 5.0 33 7-43 5-37 (352)
293 PRK04539 ppnK inorganic polyph 43.3 23 0.0005 33.7 3.1 57 358-432 64-124 (296)
294 COG0300 DltE Short-chain dehyd 43.2 1.7E+02 0.0038 27.2 8.7 40 7-51 5-44 (265)
295 TIGR03878 thermo_KaiC_2 KaiC d 43.2 91 0.002 28.9 7.1 37 9-45 38-74 (259)
296 PF09001 DUF1890: Domain of un 43.1 29 0.00062 28.5 3.1 34 19-53 11-44 (139)
297 cd01974 Nitrogenase_MoFe_beta 43.1 1.7E+02 0.0037 29.6 9.5 35 100-139 368-402 (435)
298 COG2120 Uncharacterized protei 43.1 44 0.00095 30.6 4.8 42 2-43 5-46 (237)
299 PRK03359 putative electron tra 42.9 43 0.00093 31.1 4.8 41 99-141 102-148 (256)
300 COG3349 Uncharacterized conser 42.4 25 0.00055 35.6 3.4 33 8-45 1-33 (485)
301 TIGR01425 SRP54_euk signal rec 42.4 1.6E+02 0.0034 29.7 8.9 40 8-47 101-140 (429)
302 PRK07313 phosphopantothenoylcy 42.0 40 0.00087 29.4 4.2 41 8-50 2-42 (182)
303 TIGR02195 heptsyl_trn_II lipop 41.6 1.5E+02 0.0033 28.5 8.7 100 7-140 174-278 (334)
304 PRK03378 ppnK inorganic polyph 41.3 30 0.00064 32.9 3.5 57 358-432 59-119 (292)
305 PF03446 NAD_binding_2: NAD bi 41.2 29 0.00063 29.6 3.2 31 8-43 2-32 (163)
306 COG2085 Predicted dinucleotide 41.2 49 0.0011 29.5 4.6 33 8-45 2-34 (211)
307 cd03114 ArgK-like The function 41.2 2.1E+02 0.0046 23.8 11.0 36 10-45 2-37 (148)
308 PRK06935 2-deoxy-D-gluconate 3 41.1 60 0.0013 29.8 5.6 34 8-44 15-48 (258)
309 TIGR01285 nifN nitrogenase mol 41.0 2.2E+02 0.0048 28.7 9.9 87 7-138 311-397 (432)
310 PF01695 IstB_IS21: IstB-like 40.3 41 0.00088 29.2 4.0 45 5-49 45-89 (178)
311 PRK00784 cobyric acid synthase 40.1 1.3E+02 0.0028 31.0 8.2 35 9-43 4-39 (488)
312 COG0569 TrkA K+ transport syst 40.1 34 0.00075 31.0 3.7 38 8-52 1-38 (225)
313 PF08323 Glyco_transf_5: Starc 40.0 24 0.00052 32.5 2.7 24 22-45 20-43 (245)
314 COG0771 MurD UDP-N-acetylmuram 39.9 49 0.0011 33.4 4.9 36 7-47 7-42 (448)
315 COG2210 Peroxiredoxin family p 39.6 59 0.0013 26.8 4.4 36 8-43 3-39 (137)
316 PRK13604 luxD acyl transferase 39.5 62 0.0013 30.9 5.3 38 6-43 35-72 (307)
317 PLN02929 NADH kinase 39.4 42 0.00091 31.9 4.2 66 361-432 63-137 (301)
318 PRK09841 cryptic autophosphory 39.4 2.5E+02 0.0055 30.6 10.7 41 6-46 529-571 (726)
319 PRK03372 ppnK inorganic polyph 39.3 30 0.00065 33.1 3.2 56 359-432 69-128 (306)
320 PF08433 KTI12: Chromatin asso 39.3 3.3E+02 0.0071 25.5 10.1 105 10-149 4-114 (270)
321 PRK07236 hypothetical protein; 38.9 56 0.0012 32.3 5.3 38 1-44 1-38 (386)
322 PRK05647 purN phosphoribosylgl 38.9 2.8E+02 0.006 24.6 9.1 105 8-140 2-110 (200)
323 PF00862 Sucrose_synth: Sucros 38.9 44 0.00096 34.0 4.3 121 19-142 297-434 (550)
324 PF04244 DPRP: Deoxyribodipyri 38.7 31 0.00068 31.2 3.1 25 20-44 47-71 (224)
325 COG0223 Fmt Methionyl-tRNA for 38.4 1.8E+02 0.004 27.7 8.2 35 7-46 1-35 (307)
326 TIGR02655 circ_KaiC circadian 38.2 3.1E+02 0.0067 28.2 10.7 46 8-53 264-309 (484)
327 PRK09739 hypothetical protein; 38.2 81 0.0018 27.8 5.7 38 6-43 2-42 (199)
328 TIGR03026 NDP-sugDHase nucleot 38.1 43 0.00092 33.6 4.3 31 8-43 1-31 (411)
329 COG0240 GpsA Glycerol-3-phosph 38.1 44 0.00095 32.1 4.1 34 7-45 1-34 (329)
330 PF07355 GRDB: Glycine/sarcosi 38.1 53 0.0011 31.7 4.6 41 98-140 69-119 (349)
331 PRK04148 hypothetical protein; 38.1 65 0.0014 26.5 4.5 34 6-45 16-49 (134)
332 PF06506 PrpR_N: Propionate ca 37.9 34 0.00074 29.6 3.2 30 362-394 34-63 (176)
333 PRK07206 hypothetical protein; 37.7 1.2E+02 0.0026 30.3 7.6 32 9-45 4-35 (416)
334 PRK02231 ppnK inorganic polyph 37.7 60 0.0013 30.4 4.9 59 355-431 35-97 (272)
335 cd06559 Endonuclease_V Endonuc 37.4 36 0.00077 30.5 3.2 41 99-139 81-128 (208)
336 PRK06029 3-octaprenyl-4-hydrox 37.2 56 0.0012 28.6 4.4 41 8-50 2-43 (185)
337 PRK05579 bifunctional phosphop 37.1 56 0.0012 32.6 4.9 42 4-46 3-44 (399)
338 cd01452 VWA_26S_proteasome_sub 37.0 1.7E+02 0.0036 25.7 7.3 38 8-45 108-146 (187)
339 PRK12446 undecaprenyldiphospho 37.0 1.1E+02 0.0023 30.0 6.8 88 290-390 3-120 (352)
340 COG0801 FolK 7,8-dihydro-6-hyd 36.9 68 0.0015 27.3 4.6 29 291-319 3-31 (160)
341 COG0297 GlgA Glycogen synthase 36.9 4.9E+02 0.011 26.8 16.5 171 291-472 295-478 (487)
342 PRK11823 DNA repair protein Ra 36.7 2.5E+02 0.0055 28.5 9.6 42 9-50 82-123 (446)
343 PLN03064 alpha,alpha-trehalose 36.6 1.7E+02 0.0036 32.9 8.7 106 352-473 446-563 (934)
344 PLN00141 Tic62-NAD(P)-related 36.3 76 0.0016 29.1 5.4 37 3-43 13-49 (251)
345 PLN00016 RNA-binding protein; 36.2 45 0.00097 32.9 4.1 36 7-44 52-89 (378)
346 PF13450 NAD_binding_8: NAD(P) 36.2 44 0.00095 23.6 3.0 22 24-45 8-29 (68)
347 PRK08993 2-deoxy-D-gluconate 3 36.1 3.2E+02 0.0069 24.8 9.7 33 8-43 10-42 (253)
348 cd01075 NAD_bind_Leu_Phe_Val_D 35.9 59 0.0013 28.9 4.4 33 5-42 26-58 (200)
349 TIGR00725 conserved hypothetic 35.9 1.2E+02 0.0025 25.8 6.1 101 277-394 21-125 (159)
350 TIGR00959 ffh signal recogniti 35.7 1.9E+02 0.004 29.2 8.3 41 8-48 100-141 (428)
351 PF14626 RNase_Zc3h12a_2: Zc3h 35.6 37 0.0008 27.0 2.6 27 21-47 9-35 (122)
352 TIGR01915 npdG NADPH-dependent 35.4 40 0.00088 30.3 3.4 31 8-43 1-32 (219)
353 cd07062 Peptidase_S66_mccF_lik 35.4 59 0.0013 31.1 4.6 76 301-394 49-126 (308)
354 PRK15059 tartronate semialdehy 35.1 55 0.0012 31.0 4.3 31 8-43 1-31 (292)
355 TIGR03880 KaiC_arch_3 KaiC dom 35.0 1.3E+02 0.0029 26.9 6.8 46 8-53 17-62 (224)
356 CHL00194 ycf39 Ycf39; Provisio 34.9 71 0.0015 30.5 5.2 32 8-43 1-32 (317)
357 PRK11064 wecC UDP-N-acetyl-D-m 34.9 53 0.0012 33.0 4.4 32 7-43 3-34 (415)
358 COG1327 Predicted transcriptio 34.9 74 0.0016 26.6 4.3 61 369-431 32-93 (156)
359 cd01968 Nitrogenase_NifE_I Nit 34.8 1.3E+02 0.0027 30.2 7.1 35 99-138 346-380 (410)
360 PRK06718 precorrin-2 dehydroge 34.8 61 0.0013 28.8 4.3 34 6-44 9-42 (202)
361 cd02034 CooC The accessory pro 34.5 96 0.0021 24.7 5.0 37 9-45 1-37 (116)
362 PF04413 Glycos_transf_N: 3-De 34.4 1.8E+02 0.0039 25.4 7.2 100 10-140 23-126 (186)
363 TIGR00416 sms DNA repair prote 34.3 1.9E+02 0.004 29.5 8.2 42 9-50 96-137 (454)
364 cd07035 TPP_PYR_POX_like Pyrim 34.0 2.7E+02 0.0059 23.0 9.8 26 367-392 62-93 (155)
365 TIGR00421 ubiX_pad polyprenyl 33.8 53 0.0012 28.6 3.7 37 9-46 1-37 (181)
366 cd02065 B12-binding_like B12 b 33.8 93 0.002 24.6 5.0 41 10-50 2-42 (125)
367 COG0665 DadA Glycine/D-amino a 33.8 49 0.0011 32.5 4.0 36 5-45 2-37 (387)
368 cd08783 Death_MALT1 Death doma 33.8 91 0.002 23.8 4.3 65 394-472 20-84 (97)
369 COG1492 CobQ Cobyric acid synt 33.6 1.9E+02 0.004 29.6 7.8 57 84-140 98-165 (486)
370 PRK14620 NAD(P)H-dependent gly 33.6 46 0.001 32.0 3.7 31 8-43 1-31 (326)
371 PF01372 Melittin: Melittin; 33.3 8.6 0.00019 20.9 -0.8 18 373-390 1-18 (26)
372 PHA02754 hypothetical protein; 33.2 86 0.0019 21.3 3.6 25 424-450 5-29 (67)
373 PRK11914 diacylglycerol kinase 33.2 1.8E+02 0.0039 27.7 7.6 81 291-392 12-96 (306)
374 PRK01185 ppnK inorganic polyph 33.1 45 0.00096 31.3 3.3 53 362-432 52-105 (271)
375 TIGR01005 eps_transp_fam exopo 33.1 4.6E+02 0.01 28.7 11.6 40 7-46 545-586 (754)
376 PRK12825 fabG 3-ketoacyl-(acyl 33.1 86 0.0019 28.2 5.3 38 1-43 1-38 (249)
377 PRK00005 fmt methionyl-tRNA fo 32.4 4.5E+02 0.0098 25.1 10.9 41 100-142 69-110 (309)
378 PRK12828 short chain dehydroge 32.4 93 0.002 27.8 5.3 35 5-43 5-39 (239)
379 TIGR01012 Sa_S2_E_A ribosomal 32.4 61 0.0013 28.7 3.8 32 111-142 108-141 (196)
380 PRK12829 short chain dehydroge 32.3 79 0.0017 28.9 4.9 35 5-43 9-43 (264)
381 COG0552 FtsY Signal recognitio 32.3 2.6E+02 0.0055 27.1 8.1 47 7-53 139-185 (340)
382 TIGR00313 cobQ cobyric acid sy 32.1 4.2E+02 0.0091 27.2 10.4 27 17-43 9-35 (475)
383 TIGR02237 recomb_radB DNA repa 32.1 3.5E+02 0.0076 23.7 9.9 44 9-52 14-58 (209)
384 PRK08155 acetolactate synthase 32.0 3.5E+02 0.0075 28.4 10.1 79 307-391 16-109 (564)
385 PF13460 NAD_binding_10: NADH( 31.9 55 0.0012 28.1 3.5 28 15-44 4-31 (183)
386 PLN02935 Bifunctional NADH kin 31.8 42 0.0009 34.3 3.0 54 361-432 261-318 (508)
387 PRK06179 short chain dehydroge 31.8 80 0.0017 29.1 4.9 31 10-43 6-36 (270)
388 TIGR02201 heptsyl_trn_III lipo 31.7 2.2E+02 0.0048 27.5 8.1 101 8-140 182-287 (344)
389 PF01075 Glyco_transf_9: Glyco 31.4 2.6E+02 0.0056 25.3 8.2 104 6-142 104-212 (247)
390 TIGR01380 glut_syn glutathione 31.3 75 0.0016 30.5 4.6 38 8-45 1-41 (312)
391 PF07991 IlvN: Acetohydroxy ac 31.2 45 0.00099 28.4 2.7 35 6-45 3-37 (165)
392 PRK14075 pnk inorganic polypho 31.2 70 0.0015 29.7 4.2 53 362-432 41-94 (256)
393 PLN02657 3,8-divinyl protochlo 31.2 94 0.002 30.9 5.5 36 4-43 57-92 (390)
394 PRK13869 plasmid-partitioning 30.7 81 0.0018 31.6 4.9 41 6-46 119-161 (405)
395 PF05014 Nuc_deoxyrib_tr: Nucl 30.6 1.5E+02 0.0033 23.2 5.6 93 292-396 1-101 (113)
396 PF08766 DEK_C: DEK C terminal 30.4 1.6E+02 0.0035 19.6 4.9 50 418-469 1-52 (54)
397 PRK09219 xanthine phosphoribos 30.4 1.2E+02 0.0025 26.8 5.2 38 101-140 42-81 (189)
398 PRK00652 lpxK tetraacyldisacch 30.3 95 0.0021 30.0 5.1 37 9-45 51-89 (325)
399 PRK04020 rps2P 30S ribosomal p 30.2 72 0.0016 28.4 3.9 32 111-142 114-147 (204)
400 PRK05541 adenylylsulfate kinas 30.1 1.3E+02 0.0028 25.8 5.6 43 1-43 1-43 (176)
401 KOG0409 Predicted dehydrogenas 30.0 79 0.0017 29.9 4.2 34 5-43 33-66 (327)
402 cd01141 TroA_d Periplasmic bin 30.0 80 0.0017 27.3 4.3 39 99-140 60-100 (186)
403 TIGR02482 PFKA_ATP 6-phosphofr 29.9 46 0.00099 31.7 2.8 40 358-397 85-128 (301)
404 COG0503 Apt Adenine/guanine ph 29.8 95 0.0021 27.0 4.6 37 100-138 44-82 (179)
405 PRK03501 ppnK inorganic polyph 29.7 53 0.0012 30.6 3.1 53 363-432 40-97 (264)
406 PRK06027 purU formyltetrahydro 29.6 4.3E+02 0.0094 24.9 9.3 113 1-141 83-196 (286)
407 COG3640 CooC CO dehydrogenase 29.6 1.5E+02 0.0032 27.1 5.7 40 8-47 1-41 (255)
408 COG2099 CobK Precorrin-6x redu 29.4 72 0.0016 29.3 3.8 92 7-139 2-100 (257)
409 COG3660 Predicted nucleoside-d 29.4 4.8E+02 0.01 24.4 21.9 75 310-390 189-271 (329)
410 KOG0780 Signal recognition par 29.3 2.4E+02 0.0052 27.9 7.3 40 8-47 102-141 (483)
411 PF02780 Transketolase_C: Tran 29.3 1E+02 0.0023 24.6 4.5 36 6-43 8-43 (124)
412 PF00070 Pyr_redox: Pyridine n 29.1 86 0.0019 22.7 3.7 23 23-45 10-32 (80)
413 PRK06124 gluconate 5-dehydroge 29.1 1.1E+02 0.0023 28.0 5.2 33 8-43 11-43 (256)
414 TIGR00640 acid_CoA_mut_C methy 29.0 1.5E+02 0.0033 24.2 5.4 44 7-50 2-45 (132)
415 cd02040 NifH NifH gene encodes 29.0 88 0.0019 28.9 4.6 38 9-46 3-40 (270)
416 COG4635 HemG Flavodoxin [Energ 28.8 1E+02 0.0022 26.2 4.2 36 8-43 1-37 (175)
417 COG3563 KpsC Capsule polysacch 28.8 3.7E+02 0.008 27.4 8.7 84 303-392 165-252 (671)
418 TIGR01918 various_sel_PB selen 28.6 88 0.0019 31.1 4.5 40 98-139 65-114 (431)
419 PF05225 HTH_psq: helix-turn-h 28.6 56 0.0012 21.0 2.2 26 418-444 1-26 (45)
420 COG0467 RAD55 RecA-superfamily 28.5 1.2E+02 0.0025 28.1 5.3 48 7-54 23-70 (260)
421 TIGR01917 gly_red_sel_B glycin 28.5 88 0.0019 31.1 4.5 40 98-139 65-114 (431)
422 COG0151 PurD Phosphoribosylami 28.4 2.6E+02 0.0056 28.0 7.6 34 8-46 1-34 (428)
423 PF02702 KdpD: Osmosensitive K 28.4 97 0.0021 27.5 4.3 38 7-44 5-42 (211)
424 PF05728 UPF0227: Uncharacteri 28.4 1.2E+02 0.0026 26.6 5.0 43 100-142 48-91 (187)
425 PRK06463 fabG 3-ketoacyl-(acyl 28.4 1.2E+02 0.0025 27.8 5.3 39 1-43 1-39 (255)
426 COG1087 GalE UDP-glucose 4-epi 28.3 64 0.0014 30.6 3.4 33 8-46 1-35 (329)
427 TIGR00460 fmt methionyl-tRNA f 28.2 74 0.0016 30.5 4.0 33 8-45 1-33 (313)
428 PRK07523 gluconate 5-dehydroge 28.2 1.1E+02 0.0024 27.9 5.1 32 9-43 11-42 (255)
429 PRK07454 short chain dehydroge 28.1 1.2E+02 0.0027 27.2 5.4 35 6-43 4-38 (241)
430 PRK10586 putative oxidoreducta 28.1 3.6E+02 0.0078 26.5 8.8 44 4-49 2-48 (362)
431 PF12695 Abhydrolase_5: Alpha/ 28.1 1.1E+02 0.0025 24.5 4.7 35 11-45 2-36 (145)
432 PF06180 CbiK: Cobalt chelatas 28.0 92 0.002 29.0 4.4 40 289-328 1-43 (262)
433 PF10093 DUF2331: Uncharacteri 28.0 1.8E+02 0.004 28.6 6.5 76 298-388 188-286 (374)
434 PRK08125 bifunctional UDP-gluc 27.9 3.4E+02 0.0075 29.1 9.4 39 101-141 67-106 (660)
435 TIGR00639 PurN phosphoribosylg 27.8 4.2E+02 0.0091 23.2 10.2 102 8-140 1-109 (190)
436 PRK08163 salicylate hydroxylas 27.7 68 0.0015 31.7 3.8 34 6-44 3-36 (396)
437 PRK12827 short chain dehydroge 27.6 1.1E+02 0.0024 27.6 4.9 33 7-43 6-38 (249)
438 PRK13057 putative lipid kinase 27.6 2.5E+02 0.0053 26.4 7.4 30 361-392 49-82 (287)
439 PRK05632 phosphate acetyltrans 27.5 8.1E+02 0.018 26.5 12.3 35 9-43 4-39 (684)
440 PF02826 2-Hacid_dh_C: D-isome 27.5 1.5E+02 0.0033 25.5 5.5 102 288-427 36-142 (178)
441 TIGR02622 CDP_4_6_dhtase CDP-g 27.4 96 0.0021 30.1 4.7 33 7-43 4-36 (349)
442 PRK00094 gpsA NAD(P)H-dependen 27.3 69 0.0015 30.6 3.7 32 8-44 2-33 (325)
443 CHL00076 chlB photochlorophyll 27.3 86 0.0019 32.5 4.5 36 99-139 364-399 (513)
444 TIGR02700 flavo_MJ0208 archaeo 27.2 1E+02 0.0022 28.1 4.5 36 10-45 2-39 (234)
445 PRK12744 short chain dehydroge 27.1 1.3E+02 0.0027 27.5 5.3 40 1-43 1-40 (257)
446 TIGR02113 coaC_strep phosphopa 27.0 88 0.0019 27.2 3.9 36 9-45 2-37 (177)
447 cd02072 Glm_B12_BD B12 binding 27.0 1.4E+02 0.0029 24.5 4.7 45 9-53 1-45 (128)
448 cd01981 Pchlide_reductase_B Pc 27.0 93 0.002 31.4 4.7 35 101-140 362-396 (430)
449 TIGR02699 archaeo_AfpA archaeo 26.9 1.1E+02 0.0023 26.6 4.3 39 10-50 2-42 (174)
450 COG1028 FabG Dehydrogenases wi 26.8 1.2E+02 0.0027 27.4 5.2 36 7-45 4-39 (251)
451 COG3195 Uncharacterized protei 26.8 2.8E+02 0.0061 23.7 6.4 95 355-450 64-165 (176)
452 PF04493 Endonuclease_5: Endon 26.7 1E+02 0.0022 27.5 4.3 42 99-140 77-125 (206)
453 PRK08309 short chain dehydroge 26.7 1.2E+02 0.0027 26.2 4.8 31 8-43 1-31 (177)
454 cd03789 GT1_LPS_heptosyltransf 26.7 1.7E+02 0.0037 27.2 6.2 99 9-140 123-225 (279)
455 TIGR00640 acid_CoA_mut_C methy 26.6 87 0.0019 25.7 3.6 39 5-43 51-90 (132)
456 COG1748 LYS9 Saccharopine dehy 26.6 4.8E+02 0.01 26.0 9.2 33 7-44 1-34 (389)
457 PRK00421 murC UDP-N-acetylmura 26.6 91 0.002 31.8 4.6 34 6-43 6-39 (461)
458 PRK14076 pnk inorganic polypho 26.5 54 0.0012 34.5 2.9 53 362-432 348-404 (569)
459 PRK06079 enoyl-(acyl carrier p 26.5 1.1E+02 0.0024 27.9 4.8 40 1-43 1-41 (252)
460 COG0489 Mrp ATPases involved i 26.4 1.3E+02 0.0029 28.0 5.3 48 7-54 56-105 (265)
461 PRK01175 phosphoribosylformylg 26.2 5.3E+02 0.012 24.0 11.3 35 6-43 2-36 (261)
462 PRK13234 nifH nitrogenase redu 26.2 1.3E+02 0.0028 28.5 5.3 41 6-46 2-43 (295)
463 TIGR00521 coaBC_dfp phosphopan 26.2 94 0.002 30.9 4.4 43 6-50 2-44 (390)
464 PRK12481 2-deoxy-D-gluconate 3 26.1 1.4E+02 0.003 27.3 5.3 40 1-43 1-40 (251)
465 PRK06835 DNA replication prote 26.1 90 0.0019 30.2 4.1 39 8-46 184-222 (329)
466 PRK13236 nitrogenase reductase 26.0 1.4E+02 0.003 28.4 5.4 42 5-46 3-45 (296)
467 PF02016 Peptidase_S66: LD-car 26.0 69 0.0015 30.2 3.3 75 301-393 45-121 (284)
468 PF07015 VirC1: VirC1 protein; 26.0 1.5E+02 0.0032 27.0 5.2 34 15-48 10-43 (231)
469 PRK08057 cobalt-precorrin-6x r 26.0 1E+02 0.0022 28.4 4.3 92 7-140 2-100 (248)
470 COG4081 Uncharacterized protei 26.0 1.5E+02 0.0033 24.1 4.5 37 10-46 6-43 (148)
471 TIGR01278 DPOR_BchB light-inde 26.0 1E+02 0.0022 32.0 4.7 36 100-140 355-390 (511)
472 COG0162 TyrS Tyrosyl-tRNA synt 25.9 76 0.0016 31.6 3.6 38 7-45 34-74 (401)
473 PTZ00254 40S ribosomal protein 25.9 94 0.002 28.6 3.9 32 111-142 118-151 (249)
474 PRK06567 putative bifunctional 25.9 73 0.0016 35.6 3.8 34 5-43 381-414 (1028)
475 cd00861 ProRS_anticodon_short 25.8 1.3E+02 0.0028 22.4 4.3 36 8-43 2-39 (94)
476 TIGR03457 sulphoacet_xsc sulfo 25.8 4.6E+02 0.01 27.6 9.8 26 366-391 66-97 (579)
477 PRK14568 vanB D-alanine--D-lac 25.8 1.2E+02 0.0025 29.6 4.9 39 6-44 2-44 (343)
478 PRK01966 ddl D-alanyl-alanine 25.7 1.2E+02 0.0026 29.3 5.1 40 6-45 2-45 (333)
479 PRK05693 short chain dehydroge 25.6 1.1E+02 0.0023 28.4 4.6 33 8-43 1-33 (274)
480 PF03720 UDPG_MGDP_dh_C: UDP-g 25.6 84 0.0018 24.5 3.2 29 22-50 17-45 (106)
481 PRK02910 light-independent pro 25.6 1.1E+02 0.0023 31.9 4.8 35 100-139 353-387 (519)
482 PRK05708 2-dehydropantoate 2-r 25.5 66 0.0014 30.7 3.1 33 7-44 2-34 (305)
483 PRK08939 primosomal protein Dn 25.5 1E+02 0.0022 29.5 4.3 42 7-48 156-197 (306)
484 PF08006 DUF1700: Protein of u 25.5 2.4E+02 0.0053 24.3 6.5 22 436-457 21-42 (181)
485 PF10083 DUF2321: Uncharacteri 25.5 1.5E+02 0.0032 25.0 4.6 73 389-469 77-149 (158)
486 PRK14573 bifunctional D-alanyl 25.4 80 0.0017 34.9 4.1 35 5-43 2-36 (809)
487 TIGR02114 coaB_strep phosphopa 25.4 78 0.0017 28.7 3.4 30 12-43 18-47 (227)
488 cd01976 Nitrogenase_MoFe_alpha 25.3 79 0.0017 31.8 3.7 36 100-140 360-395 (421)
489 PRK06180 short chain dehydroge 25.2 1.6E+02 0.0034 27.4 5.6 32 9-43 5-36 (277)
490 PLN02487 zeta-carotene desatur 25.2 1.1E+02 0.0024 32.1 4.9 35 6-45 74-108 (569)
491 cd00763 Bacterial_PFK Phosphof 25.1 61 0.0013 31.2 2.7 39 358-396 86-127 (317)
492 COG3340 PepE Peptidase E [Amin 25.1 5.1E+02 0.011 23.3 8.1 45 277-322 22-66 (224)
493 PRK07819 3-hydroxybutyryl-CoA 25.1 81 0.0018 29.8 3.6 31 9-44 7-37 (286)
494 PF06564 YhjQ: YhjQ protein; 25.1 1.2E+02 0.0027 27.8 4.6 35 10-44 4-39 (243)
495 PRK07773 replicative DNA helic 25.1 1.5E+02 0.0032 33.2 6.1 42 10-51 220-262 (886)
496 cd01983 Fer4_NifH The Fer4_Nif 24.9 1.7E+02 0.0037 21.3 4.9 33 10-42 2-34 (99)
497 cd08194 Fe-ADH6 Iron-containin 24.8 1.6E+02 0.0035 29.0 5.8 43 279-323 14-56 (375)
498 PRK07417 arogenate dehydrogena 24.7 88 0.0019 29.4 3.8 31 8-43 1-31 (279)
499 PRK06194 hypothetical protein; 24.7 1.3E+02 0.0029 27.9 5.1 32 9-43 7-38 (287)
500 PF07476 MAAL_C: Methylasparta 24.7 48 0.001 29.7 1.7 112 295-426 79-207 (248)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.2e-67 Score=518.06 Aligned_cols=440 Identities=35% Similarity=0.605 Sum_probs=342.0
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHP 80 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 80 (476)
|+++..+.||+++|++++||++||+.||+.|+.||+.|||++++.+..+ .. ...+.+++..+|+++|++..
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~---~~------~~~~~i~~~~ip~glp~~~~ 71 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS---PS------DDFTDFQFVTIPESLPESDF 71 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc---cc------cCCCCeEEEeCCCCCCcccc
Confidence 8888888999999999999999999999999999999999999876421 10 11124899999988887433
Q ss_pred CCCCcHHHHHHHHHhhchHHHHHHHhc----CCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHH
Q 011832 81 RAGDQLMEMFDSLSLNTRPLLKQMLID----TSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMI 156 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~ll~~----~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~ 156 (476)
+.. ....++..+...+.+.+++++++ ...+++|||+|.+..|+.++|+++|||++.|++++++.+..+..++...
T Consensus 72 ~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 72 KNL-GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred ccc-CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 322 23355555555556666766653 2346799999999999999999999999999999998887666543332
Q ss_pred hhCC-CCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHH
Q 011832 157 QAGE-LPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHI 235 (476)
Q Consensus 157 ~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~ 235 (476)
.... .|.. ... .+....+|++.. ++..+++..... ............ .....++.+++||+.+||+.+++++
T Consensus 151 ~~~~~~~~~--~~~-~~~~~~iPg~~~-~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l 223 (451)
T PLN02410 151 ANNVLAPLK--EPK-GQQNELVPEFHP-LRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRL 223 (451)
T ss_pred hccCCCCcc--ccc-cCccccCCCCCC-CChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHH
Confidence 2111 2221 100 011124666654 555555533221 111222222222 2356789999999999999999999
Q ss_pred HhhC-CCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHH
Q 011832 236 RTKC-PKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGL 314 (476)
Q Consensus 236 ~~~~-p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~ 314 (476)
+... ++++.|||++...... .++|+.+.++.+||++++++++|||||||....+.+++.+++.+|
T Consensus 224 ~~~~~~~v~~vGpl~~~~~~~--------------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL 289 (451)
T PLN02410 224 QQQLQIPVYPIGPLHLVASAP--------------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGL 289 (451)
T ss_pred HhccCCCEEEecccccccCCC--------------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHH
Confidence 8865 5899999998643210 122334456899999998899999999999999999999999999
Q ss_pred HhcCCceEEEECCCCCCCc--hhhH-HHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccC
Q 011832 315 VDSKQRFLWVIRPDSVIGE--GDAL-AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWP 391 (476)
Q Consensus 315 ~~~~~~~i~~~~~~~~~~~--~~~l-~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP 391 (476)
+.++++|||+++.+...+. ...+ ++|.+|+++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|
T Consensus 290 e~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P 369 (451)
T PLN02410 290 DSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKP 369 (451)
T ss_pred HhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecc
Confidence 9999999999984321111 1125 799999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 392 YFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV-ERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 392 ~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~-~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
+++||+.||+++++.+|+|+.+...+++++|+++|+++|. ++++.||++|+++++++++|+.+||++.+++++|++.++
T Consensus 370 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 370 FSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred ccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999997777999999778999999999999997 346789999999999999999999999999999999986
Q ss_pred h
Q 011832 471 M 471 (476)
Q Consensus 471 ~ 471 (476)
.
T Consensus 450 ~ 450 (451)
T PLN02410 450 T 450 (451)
T ss_pred h
Confidence 4
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=6.9e-66 Score=513.11 Aligned_cols=455 Identities=30% Similarity=0.558 Sum_probs=350.7
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccc---cccCCCCeeEEecCCCCCC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHD---RFLQYSEFQFKTISDGLPA 77 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~~~~ 77 (476)
|+..+.+.||+++|+|++||++||+.||+.|+.+|..|||++++.+...+.+...... .......+.|..+++++|+
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~ 80 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE 80 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC
Confidence 7888899999999999999999999999999999999999999877665542110000 0001223677778888876
Q ss_pred CCCCCCCcHHHHHHHHHhhchHHHHHHHhcC---CCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhH
Q 011832 78 DHPRAGDQLMEMFDSLSLNTRPLLKQMLIDT---SPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPE 154 (476)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~ 154 (476)
+.. ...++..++..+...+.+.+.++++.. ..+++|||+|.+..|+..+|+++|||++.|++++++.++.+.+++.
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~ 159 (480)
T PLN02555 81 DDP-RRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH 159 (480)
T ss_pred Ccc-cccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh
Confidence 422 223445566666556678888888742 2345999999999999999999999999999999998887776532
Q ss_pred HHhhCCCCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHH
Q 011832 155 MIQAGELPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSH 234 (476)
Q Consensus 155 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~ 234 (476)
...|.. ...-.+....+|+++. ++..+++.++..........+...+.......++.+++||+.+||+..+++
T Consensus 160 ----~~~~~~--~~~~~~~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 232 (480)
T PLN02555 160 ----GLVPFP--TETEPEIDVQLPCMPL-LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDY 232 (480)
T ss_pred ----cCCCcc--cccCCCceeecCCCCC-cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 222211 1000011123677765 667777765532112233334444445566788999999999999999999
Q ss_pred HHhhCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHH
Q 011832 235 IRTKCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGL 314 (476)
Q Consensus 235 ~~~~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~ 314 (476)
++...| ++.|||+........ . .. ..++|+.++++.+||++++++++|||||||....+.+++.+++.++
T Consensus 233 l~~~~~-v~~iGPl~~~~~~~~-~-----~~---~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l 302 (480)
T PLN02555 233 MSKLCP-IKPVGPLFKMAKTPN-S-----DV---KGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGV 302 (480)
T ss_pred HhhCCC-EEEeCcccCcccccc-c-----cc---cccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHH
Confidence 887665 999999975322100 0 00 0123445678999999998889999999999999999999999999
Q ss_pred HhcCCceEEEECCCCCCC--chhhH-HHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccC
Q 011832 315 VDSKQRFLWVIRPDSVIG--EGDAL-AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWP 391 (476)
Q Consensus 315 ~~~~~~~i~~~~~~~~~~--~~~~l-~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP 391 (476)
+..+.+|||+++...... ....+ +++.+++++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|
T Consensus 303 ~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P 382 (480)
T PLN02555 303 LNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFP 382 (480)
T ss_pred HhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCC
Confidence 999999999987431110 01134 577788899999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHhhhcceeecc-----c-ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 011832 392 YFADQQINSRFVSEVWNLGLDMK-----D-VCDRNVVEKMVNDLMV-ERKEEFMRAADRMATMARTTANEGGPSYCNLDR 464 (476)
Q Consensus 392 ~~~DQ~~na~~v~~~~G~G~~~~-----~-~~~~~~l~~~i~~~l~-~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~ 464 (476)
+++||+.||+++++.+|+|+.+. . .+++++|.++|+++|+ ++|+.+|+||++|++++++|+.+||++.+++++
T Consensus 383 ~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~ 462 (480)
T PLN02555 383 QWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQE 462 (480)
T ss_pred CccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999988889999993 2 5899999999999997 467899999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 011832 465 LIDDIKMMS 473 (476)
Q Consensus 465 ~i~~~~~~~ 473 (476)
||+.+.+..
T Consensus 463 ~v~~i~~~~ 471 (480)
T PLN02555 463 FVDKLVRKS 471 (480)
T ss_pred HHHHHHhcc
Confidence 999998753
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.9e-65 Score=507.65 Aligned_cols=436 Identities=28% Similarity=0.486 Sum_probs=335.7
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAG 83 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 83 (476)
|..+.||+++|++++||++||++||+.|+.+|++||+++++.+..++..... ..+.+++..+|++++.+. .
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~------~~~~i~~v~lp~g~~~~~---~ 73 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD------PKLGITFMSISDGQDDDP---P 73 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC------CCCCEEEEECCCCCCCCc---c
Confidence 5566799999999999999999999999999999999999887665543311 112488999987765421 1
Q ss_pred CcHHHHHHHHHhhchHHHHHHHhcCC--CCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCC
Q 011832 84 DQLMEMFDSLSLNTRPLLKQMLIDTS--PPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGEL 161 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (476)
.++..+...+...+.+.+++++++.. .+++|||+|.+..|+.++|+++|||++.|+++++..+..+.+.+.....+..
T Consensus 74 ~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 153 (448)
T PLN02562 74 RDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLI 153 (448)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccc
Confidence 23444455554456788888887531 2458999999999999999999999999999988877776655433222222
Q ss_pred CCCcCC-ccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHH----
Q 011832 162 PMKAYD-EDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIR---- 236 (476)
Q Consensus 162 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~---- 236 (476)
+.. . ....+...++|++.. ++.++++.+...........+...+......+++.+++||+.+||+..++..+
T Consensus 154 ~~~--~~~~~~~~~~~~Pg~~~-l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 230 (448)
T PLN02562 154 SET--GCPRQLEKICVLPEQPL-LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYN 230 (448)
T ss_pred ccc--cccccccccccCCCCCC-CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhc
Confidence 111 0 000011224676655 66666665443221122234444555566778899999999999998888665
Q ss_pred -hhCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEecccc-ccCHHHHHHHHHHH
Q 011832 237 -TKCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSIT-LLKREQLIEFWHGL 314 (476)
Q Consensus 237 -~~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~-~~~~~~~~~~~~a~ 314 (476)
+..|+++.|||++....... ...+.|+.+.++.+||++++++++|||||||.. ..+.+++++++.+|
T Consensus 231 ~~~~~~v~~iGpl~~~~~~~~-----------~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l 299 (448)
T PLN02562 231 NGQNPQILQIGPLHNQEATTI-----------TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALAL 299 (448)
T ss_pred cccCCCEEEecCccccccccc-----------CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHH
Confidence 44678999999986432100 001123345668899999988899999999986 67999999999999
Q ss_pred HhcCCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCc
Q 011832 315 VDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYF 393 (476)
Q Consensus 315 ~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~ 393 (476)
+.++++|||+++.+.. ..+ ++|.+++++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|++
T Consensus 300 ~~~g~~fiW~~~~~~~----~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~ 375 (448)
T PLN02562 300 EASGRPFIWVLNPVWR----EGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVA 375 (448)
T ss_pred HHCCCCEEEEEcCCch----hhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcc
Confidence 9999999999974311 124 67888899999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 394 ADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 394 ~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
+||+.||+++++.+|+|+.+. .++.++|+++|+++|++ ++||+||++++++++++ .+||||++++++|++.++
T Consensus 376 ~DQ~~na~~~~~~~g~g~~~~-~~~~~~l~~~v~~~l~~--~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 376 GDQFVNCAYIVDVWKIGVRIS-GFGQKEVEEGLRKVMED--SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred cchHHHHHHHHHHhCceeEeC-CCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 999999999966679998885 68999999999999987 79999999999998886 667999999999999874
No 4
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-64 Score=501.16 Aligned_cols=443 Identities=23% Similarity=0.422 Sum_probs=332.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcch-hhhhhcccccccccCCCCeeEEecCCCCCCCCCCC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAG--LKVTFLNSKHNH-ERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRA 82 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rG--H~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 82 (476)
.+.||+++|++++||++||+.||+.|+.+| ..|||++++.+. ..+..... ......+.+++..+|+.........
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~~~~~~~ 79 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVK--SIASSQPFVRFIDVPELEEKPTLGG 79 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhh--hccCCCCCeEEEEeCCCCCCCcccc
Confidence 457999999999999999999999999998 999999998765 22221111 0001123589999986432111111
Q ss_pred CCcHHHHHHHHHhhc----hHHHHHHHhcC---CCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHH
Q 011832 83 GDQLMEMFDSLSLNT----RPLLKQMLIDT---SPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEM 155 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~----~~~l~~ll~~~---~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~ 155 (476)
..+....+......+ .+.+.+++++. +++++|||+|.+..|+..+|+++|||++.|+++++..+..+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 223443333333334 44566666532 12359999999999999999999999999999998887776654432
Q ss_pred HhhC-CCCCCcCCccccccccccCCC-CcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHH
Q 011832 156 IQAG-ELPMKAYDEDMDRLITKVPGM-ETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILS 233 (476)
Q Consensus 156 ~~~~-~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~ 233 (476)
..+. ..+.. .+ +..-.+|++ .. ++..+++.++.... . .....+......+++.+|+||+++||++.++
T Consensus 160 ~~~~~~~~~~--~~---~~~~~vPgl~~~-l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 160 HSKDTSVFVR--NS---EEMLSIPGFVNP-VPANVLPSALFVED---G-YDAYVKLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred cccccccCcC--CC---CCeEECCCCCCC-CChHHCcchhcCCc---c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 1110 01000 00 112246776 34 67777766543211 1 2223333445678999999999999999999
Q ss_pred HHH--hhCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHH
Q 011832 234 HIR--TKCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFW 311 (476)
Q Consensus 234 ~~~--~~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~ 311 (476)
+++ +..|+++.|||++.......++ ...+ .++++.+||++++++++|||||||.+..+.+++++++
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~~-----------~~~~-~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela 297 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHPE-----------QDLA-RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIA 297 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCCc-----------cccc-hhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHH
Confidence 884 4568999999998643211100 0111 2467999999998889999999999999999999999
Q ss_pred HHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceecc
Q 011832 312 HGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 312 ~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
.+|+.++++|||+++.+... ..+.+ ++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 298 ~~l~~~~~~flW~~r~~~~~-~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~ 376 (468)
T PLN02207 298 HGLELCQYRFLWSLRTEEVT-NDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTW 376 (468)
T ss_pred HHHHHCCCcEEEEEeCCCcc-ccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEec
Confidence 99999999999999853211 11234 68888899999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHhhhcceeecc--------cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 011832 391 PYFADQQINSRFVSEVWNLGLDMK--------DVCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNL 462 (476)
Q Consensus 391 P~~~DQ~~na~~v~~~~G~G~~~~--------~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~ 462 (476)
|+++||+.||+++++.+|+|+.+. ..+++++|.++|+++|++++++||+||+++++++++|+.+||||++++
T Consensus 377 P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l 456 (468)
T PLN02207 377 PMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAI 456 (468)
T ss_pred CccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999999877789998662 135999999999999974458999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 011832 463 DRLIDDIKMMS 473 (476)
Q Consensus 463 ~~~i~~~~~~~ 473 (476)
++|++.+....
T Consensus 457 ~~~v~~~~~~~ 467 (468)
T PLN02207 457 EKFIHDVIGIK 467 (468)
T ss_pred HHHHHHHHhcc
Confidence 99999998764
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6e-64 Score=499.61 Aligned_cols=439 Identities=28% Similarity=0.486 Sum_probs=334.8
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHH--HHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEI--FGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPR 81 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 81 (476)
..++.||+++|+|++||++|++.||+. |++||++|||++++.+.+.+..... ..+.+++..+++++|++..
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~------~~~~~~~~~~~~glp~~~~- 77 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK------PRRPVDLVFFSDGLPKDDP- 77 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC------CCCceEEEECCCCCCCCcc-
Confidence 355689999999999999999999999 5699999999999887665532211 1234777777877876431
Q ss_pred CCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCC
Q 011832 82 AGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGEL 161 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (476)
.+...++..+...+.+.+++++++. +|||||+|.+..|+..+|+++|||++.|+++++..+..+.++... ....
T Consensus 78 --~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~ 151 (456)
T PLN02210 78 --RAPETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSF 151 (456)
T ss_pred --cCHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCC
Confidence 2344566666666677888888876 799999999999999999999999999999999888876654321 0111
Q ss_pred CCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhCCC
Q 011832 162 PMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCPK 241 (476)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~p~ 241 (476)
+.. . ... ....+|++.. +...+++.++.... .........+.......++.+++||+.+||+..+++++.. ++
T Consensus 152 ~~~--~-~~~-~~~~~Pgl~~-~~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-~~ 224 (456)
T PLN02210 152 PDL--E-DLN-QTVELPALPL-LEVRDLPSFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL-KP 224 (456)
T ss_pred Ccc--c-ccC-CeeeCCCCCC-CChhhCChhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc-CC
Confidence 111 0 000 1123566654 55555554333211 1112122223334456789999999999999999998874 68
Q ss_pred eeeeCCCcccc--cccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcCC
Q 011832 242 VYTIGPLHLQL--KTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQ 319 (476)
Q Consensus 242 ~~~vG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 319 (476)
+++|||++... ...... ...+...++|+.++++.+||++++++++|||||||....+.+++++++.+|+.++.
T Consensus 225 v~~VGPl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 225 VIPIGPLVSPFLLGDDEEE-----TLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred EEEEcccCchhhcCccccc-----ccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 99999997421 100000 00001123566677899999998888999999999998899999999999999999
Q ss_pred ceEEEECCCCCCCchhhHHHHHHhh-cCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccchh
Q 011832 320 RFLWVIRPDSVIGEGDALAELVEGT-KERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQI 398 (476)
Q Consensus 320 ~~i~~~~~~~~~~~~~~l~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~ 398 (476)
+|||+++.+.... ...+|.++. ++++++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 300 ~flw~~~~~~~~~---~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~ 376 (456)
T PLN02210 300 PFLWVIRPKEKAQ---NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPI 376 (456)
T ss_pred CEEEEEeCCcccc---chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHH
Confidence 9999997432111 124555666 488889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcceeeccc-----ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 399 NSRFVSEVWNLGLDMKD-----VCDRNVVEKMVNDLMV-ERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 399 na~~v~~~~G~G~~~~~-----~~~~~~l~~~i~~~l~-~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
||+++++.+|+|+.+.. .+++++|+++|+++|. ++|+.+|+||++|++.+++|+.+|||+++++++|++.+.
T Consensus 377 na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 377 DARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99999665899999852 5899999999999997 446789999999999999999999999999999999875
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5e-64 Score=495.73 Aligned_cols=431 Identities=25% Similarity=0.470 Sum_probs=330.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQ 85 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (476)
++.||+++|++++||++||++||+.|+.+|+.|||++++.+...+.... .+.+++..+++++|++..+...+
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~--------~~~i~~~~ipdglp~~~~~~~~~ 75 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDP--------SSPISIATISDGYDQGGFSSAGS 75 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCC--------CCCEEEEEcCCCCCCcccccccC
Confidence 4579999999999999999999999999999999999987765442211 12489999998888743233334
Q ss_pred HHHHHHHHHhhchHHHHHHHhcC--CCCc-eEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCC
Q 011832 86 LMEMFDSLSLNTRPLLKQMLIDT--SPPV-SCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELP 162 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~ll~~~--~~~~-DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (476)
+..++..+...+.+.++++++.. ..+| ||||+|.+..|+.++|+++|||++.|++++++....+.. ... .....+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~~~~~ 153 (449)
T PLN02173 76 VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NNGSLT 153 (449)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-ccCCcc
Confidence 55666666667788888888742 1244 999999999999999999999999999988777655443 111 000000
Q ss_pred CCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhCCCe
Q 011832 163 MKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCPKV 242 (476)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~p~~ 242 (476)
..+|++.. ++..+++.+...............+......+++.+++||+.+||+..+++++.. +++
T Consensus 154 ------------~~~pg~p~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~~v 219 (449)
T PLN02173 154 ------------LPIKDLPL-LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-CPV 219 (449)
T ss_pred ------------CCCCCCCC-CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-CCe
Confidence 01455544 5556666544322222223333444455667899999999999999999999765 479
Q ss_pred eeeCCCcccccccccccccccccccccCCcc--ccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcCCc
Q 011832 243 YTIGPLHLQLKTRFASNMISSSSQKSLNSLW--EVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQR 320 (476)
Q Consensus 243 ~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 320 (476)
+.|||++......... ....+...++| +.++++.+||++++++++|||||||....+.+++.+++.++ .+.+
T Consensus 220 ~~VGPl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~ 293 (449)
T PLN02173 220 LTIGPTVPSMYLDQQI----KSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFS 293 (449)
T ss_pred eEEcccCchhhccccc----cccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCC
Confidence 9999997421100000 00000012344 23456999999998889999999999999999999999999 6778
Q ss_pred eEEEECCCCCCCchhhH-HHHHHhh-cCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccchh
Q 011832 321 FLWVIRPDSVIGEGDAL-AELVEGT-KERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQI 398 (476)
Q Consensus 321 ~i~~~~~~~~~~~~~~l-~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~ 398 (476)
|+|+++.+. ...+ ++|.+++ ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 294 flWvvr~~~----~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 369 (449)
T PLN02173 294 YLWVVRASE----ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPM 369 (449)
T ss_pred EEEEEeccc----hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchH
Confidence 999997431 1123 5777777 578999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcceeeccc-----ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 399 NSRFVSEVWNLGLDMKD-----VCDRNVVEKMVNDLMV-ERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 399 na~~v~~~~G~G~~~~~-----~~~~~~l~~~i~~~l~-~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
||+++++.+|+|+.+.. .++.++|+++|+++|+ ++++.+|++|+++++++++|+.+||++.+++++|++.+.
T Consensus 370 Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 370 NAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99999777799988852 2699999999999997 456789999999999999999999999999999999874
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.1e-63 Score=494.08 Aligned_cols=432 Identities=28% Similarity=0.482 Sum_probs=328.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcch-hhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGL-AGLKVTFLNSKHNH-ERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGD 84 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~-rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 84 (476)
+.||+++|++++||++|+++||+.|+. +|++|||++++.+. +.+... ....+.+++..++++++++......
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~------~~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN------HNNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc------CCCCCCEEEEEcCCCCCCccccccc
Confidence 469999999999999999999999996 79999999997642 221111 0112358999999888775322233
Q ss_pred cHHHHHHHHHhhchHHHHHHHhcC---CCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCC
Q 011832 85 QLMEMFDSLSLNTRPLLKQMLIDT---SPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGEL 161 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~ll~~~---~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (476)
+....+......+.+.+.+++++. ..+++|||+|.+..|+.++|+++|||++.|++++++.+..++.+... .
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~-----~ 151 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG-----N 151 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc-----C
Confidence 455556666667788888888742 13569999999999999999999999999999999988877654321 0
Q ss_pred CCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCC--CCcEEEEcchhhcchHHHHHHHhhC
Q 011832 162 PMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSP--RAHALILNTFEDLEEPILSHIRTKC 239 (476)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~l~~~~~~~ 239 (476)
+ ....+|++.. +...+++.++..........+...+...... .++.+++||+.+||+..+++++.
T Consensus 152 ~----------~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-- 218 (455)
T PLN02152 152 N----------SVFEFPNLPS-LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-- 218 (455)
T ss_pred C----------CeeecCCCCC-CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc--
Confidence 0 0113566554 5666666655322212222233323333222 35799999999999999998876
Q ss_pred CCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcCC
Q 011832 240 PKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQ 319 (476)
Q Consensus 240 p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 319 (476)
.+++.|||+........ . ... ...++|+.+.++.+||++++++++|||||||...++.+++++++.+|+.+++
T Consensus 219 ~~v~~VGPL~~~~~~~~-~-----~~~-~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~ 291 (455)
T PLN02152 219 IEMVAVGPLLPAEIFTG-S-----ESG-KDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKR 291 (455)
T ss_pred CCEEEEcccCccccccc-c-----ccC-ccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCC
Confidence 26999999975321000 0 000 0001234456799999999888999999999999999999999999999999
Q ss_pred ceEEEECCCCCC-----Cc---hhhH-HHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceecc
Q 011832 320 RFLWVIRPDSVI-----GE---GDAL-AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 320 ~~i~~~~~~~~~-----~~---~~~l-~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
+|||+++.+... +. ...+ ++|.+++++|+++++|+||.+||+|+++++||||||+||+.||+++|||+|++
T Consensus 292 ~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~ 371 (455)
T PLN02152 292 PFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAF 371 (455)
T ss_pred CeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEec
Confidence 999999753110 00 0022 67888899999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHhhhcceeecc--c--ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011832 391 PYFADQQINSRFVSEVWNLGLDMK--D--VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLI 466 (476)
Q Consensus 391 P~~~DQ~~na~~v~~~~G~G~~~~--~--~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i 466 (476)
|+++||+.||+++++.+|+|+.+. + .+++++|+++|+++|++++..||++|+++++++++++.+||++++++++||
T Consensus 372 P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li 451 (455)
T PLN02152 372 PMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFV 451 (455)
T ss_pred cccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 999999999999976666776663 2 469999999999999865567999999999999999999999999999999
Q ss_pred HHH
Q 011832 467 DDI 469 (476)
Q Consensus 467 ~~~ 469 (476)
+.+
T Consensus 452 ~~i 454 (455)
T PLN02152 452 KTL 454 (455)
T ss_pred HHh
Confidence 986
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.5e-63 Score=495.47 Aligned_cols=451 Identities=22% Similarity=0.382 Sum_probs=333.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecC----CCCCCCCC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTIS----DGLPADHP 80 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~ 80 (476)
.+++||+++|++++||++||+.||+.|+.+|+.|||++++.+..++..... ..+.+++..++ +++|++..
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~------~~~~i~~~~lp~P~~~~lPdG~~ 80 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS------KHPSIETLVLPFPSHPSIPSGVE 80 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc------cCCCeeEEeCCCCCcCCCCCCCc
Confidence 567999999999999999999999999999999999999988776644321 11236666543 14554321
Q ss_pred CC---CCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHh
Q 011832 81 RA---GDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQ 157 (476)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~ 157 (476)
.. ..+....+......+.+.+.+++.+...+++|||+|.+..|+.++|+++|||++.|++++++.++.+.++....+
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 81 NVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred ChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 11 111222233333445667777777643467999999999999999999999999999999999988877543110
Q ss_pred hCCCCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHh
Q 011832 158 AGELPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRT 237 (476)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~ 237 (476)
....+.. .+. ...+..+|++.. ++..+++.++..............+.......++.+++||+.+||+..+++++.
T Consensus 161 ~~~~~~~--~~~-~~~~~~iPg~~~-~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 161 TKINPDD--QNE-ILSFSKIPNCPK-YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred ccccccc--ccc-ccccCCCCCCCC-cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 0000000 000 011234677655 666666654432211223333343444445677889999999999999999988
Q ss_pred hC--CCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHH
Q 011832 238 KC--PKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLV 315 (476)
Q Consensus 238 ~~--p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~ 315 (476)
.+ ++++.|||++......... ...+ .+.+..++++.+||++++++++|||||||.+..+.+++.+++.+|+
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~-----~~~~--~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~ 309 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGL-----MERG--GPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLE 309 (477)
T ss_pred hcCCCCeEEeCCCcccccccccc-----cccC--CcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHH
Confidence 65 6899999997532100000 0000 0111134679999999988899999999999899999999999999
Q ss_pred hcCCceEEEECCCCCCC-chhhH-HHHHHhhcC-CceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCC
Q 011832 316 DSKQRFLWVIRPDSVIG-EGDAL-AELVEGTKE-RGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPY 392 (476)
Q Consensus 316 ~~~~~~i~~~~~~~~~~-~~~~l-~~~~~~~~~-nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~ 392 (476)
.++.+|||+++.+.... ....+ .+|.+++.+ ++++.+|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 310 ~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 310 KSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred hCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 99999999997532211 11134 567666644 5566799999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhhhcceeeccc----ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 393 FADQQINSRFVSEVWNLGLDMKD----VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 393 ~~DQ~~na~~v~~~~G~G~~~~~----~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
++||+.||+++++++|+|+.+.. ..+.+++.++|++++. +++.||+||+++++++++|+.+||++++++++|++.
T Consensus 390 ~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~-~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~ 468 (477)
T PLN02863 390 AADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS-ENQVERERAKELRRAALDAIKERGSSVKDLDGFVKH 468 (477)
T ss_pred cccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 99999999998788899999842 4689999999999995 237999999999999999999999999999999999
Q ss_pred HHhhc
Q 011832 469 IKMMS 473 (476)
Q Consensus 469 ~~~~~ 473 (476)
+.++.
T Consensus 469 i~~~~ 473 (477)
T PLN02863 469 VVELG 473 (477)
T ss_pred HHHhc
Confidence 98764
No 9
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.6e-63 Score=494.33 Aligned_cols=439 Identities=31% Similarity=0.539 Sum_probs=336.2
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLA--GLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPR 81 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 81 (476)
...+.||+++|+|++||++||++||++|++| ||+||+++++.+...+.+... .+.++|..++++++++. .
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-------~~gi~fv~lp~~~p~~~-~ 78 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-------PDNIRFATIPNVIPSEL-V 78 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-------CCCEEEEECCCCCCCcc-c
Confidence 4567899999999999999999999999999 999999999887776654321 13489999987666532 2
Q ss_pred CCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCC
Q 011832 82 AGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGEL 161 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (476)
...+...++..+...+.+.+++++++...++||||+|.++.|+..+|+++|||++.|+++++..++.+.+++........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 79 RAADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred cccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 22345555555544567778888875434689999999999999999999999999999998777766655432211122
Q ss_pred CCCcCCcc-ccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhCC
Q 011832 162 PMKAYDED-MDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCP 240 (476)
Q Consensus 162 p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~p 240 (476)
|.. ... ......++|++.. ++..+++.+.... .....+...........++.+++||+.+||+..+++++...+
T Consensus 159 ~~~--~~~~~~~~~~~iPg~~~-l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~ 233 (459)
T PLN02448 159 PVE--LSESGEERVDYIPGLSS-TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFP 233 (459)
T ss_pred CCc--cccccCCccccCCCCCC-CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcC
Confidence 221 100 0111224666654 5555555443321 222233444444556678899999999999999999988654
Q ss_pred -CeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcCC
Q 011832 241 -KVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQ 319 (476)
Q Consensus 241 -~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 319 (476)
+++.|||+........... ..+ ....+.++.+|++.++++++|||||||....+.+++++++.+|+.++.
T Consensus 234 ~~~~~iGP~~~~~~~~~~~~----~~~-----~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~ 304 (459)
T PLN02448 234 FPVYPIGPSIPYMELKDNSS----SSN-----NEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGV 304 (459)
T ss_pred CceEEecCcccccccCCCcc----ccc-----cccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCC
Confidence 8999999975321100000 000 001124788999998888999999999988889999999999999999
Q ss_pred ceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccchhh
Q 011832 320 RFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQIN 399 (476)
Q Consensus 320 ~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~n 399 (476)
+|||+++.+. .++.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.|
T Consensus 305 ~~lw~~~~~~--------~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~n 376 (459)
T PLN02448 305 RFLWVARGEA--------SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLN 376 (459)
T ss_pred CEEEEEcCch--------hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhh
Confidence 9999886431 24445556799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeeccc------ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 400 SRFVSEVWNLGLDMKD------VCDRNVVEKMVNDLMVE---RKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 400 a~~v~~~~G~G~~~~~------~~~~~~l~~~i~~~l~~---~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
|+++++.+|+|+.+.. .+++++|+++|+++|++ ++.+||++|+++++++++++.+||||.+++++|++.+.
T Consensus 377 a~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~ 456 (459)
T PLN02448 377 SKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDIS 456 (459)
T ss_pred HHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 9999766788888741 47999999999999973 56789999999999999999999999999999999998
Q ss_pred hh
Q 011832 471 MM 472 (476)
Q Consensus 471 ~~ 472 (476)
+.
T Consensus 457 ~~ 458 (459)
T PLN02448 457 QG 458 (459)
T ss_pred cc
Confidence 64
No 10
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.9e-63 Score=496.25 Aligned_cols=442 Identities=24% Similarity=0.405 Sum_probs=328.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcchhhhh-hccccccccc--CCCCeeEEecCCCCCCCCCC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAG--LKVTFLNSKHNHERLI-RYTDIHDRFL--QYSEFQFKTISDGLPADHPR 81 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~~-~~~~~~~~~~--~~~~i~~~~l~~~~~~~~~~ 81 (476)
|+||+++|++++||++||++||+.|+.+| ..|||++++.+..++. ..... .... ..+.+++..++++.+... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~lp~~~~~~~-~ 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYI-ASLSASSEDRLRYEVISAGDQPTT-E 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhh-hhcccCCCCCeEEEEcCCCCCCcc-c
Confidence 68999999999999999999999999999 8899999987754321 01000 1111 122489999986654211 1
Q ss_pred CCCcHHHHHHHHHhhchHHHHHHHhcC---C-CCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHh
Q 011832 82 AGDQLMEMFDSLSLNTRPLLKQMLIDT---S-PPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQ 157 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~ll~~~---~-~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~ 157 (476)
. ..+..++..+...+.+.+++++... . ++.+|||+|.+..|+.++|+++|||++.|+++++..++.+.+.+....
T Consensus 80 ~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~ 158 (481)
T PLN02554 80 D-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYD 158 (481)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhcc
Confidence 1 1333334444444456666665431 1 234899999999999999999999999999999999888777554211
Q ss_pred hCCCCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHh
Q 011832 158 AGELPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRT 237 (476)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~ 237 (476)
....+... ..+. ...-.+|++...++..+++.+... +...+...+.......++.+++||+.+||+..+..+..
T Consensus 159 ~~~~~~~~-~~~~-~~~v~iPgl~~pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 159 EKKYDVSE-LEDS-EVELDVPSLTRPYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred ccccCccc-cCCC-CceeECCCCCCCCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 11011000 0000 011236666311555566543321 12233334444566789999999999999999888876
Q ss_pred ---hCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHH
Q 011832 238 ---KCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGL 314 (476)
Q Consensus 238 ---~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~ 314 (476)
..|+++.|||++......... . .+.++++.+||++++++++|||||||....+.+++.+++.+|
T Consensus 233 ~~~~~~~v~~vGpl~~~~~~~~~~------------~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l 299 (481)
T PLN02554 233 SSGDLPPVYPVGPVLHLENSGDDS------------K-DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIAL 299 (481)
T ss_pred cccCCCCEEEeCCCcccccccccc------------c-cccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHH
Confidence 457899999994321110000 0 012457999999988889999999999889999999999999
Q ss_pred HhcCCceEEEECCCCC----------CCchhhH-HHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhh
Q 011832 315 VDSKQRFLWVIRPDSV----------IGEGDAL-AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVA 383 (476)
Q Consensus 315 ~~~~~~~i~~~~~~~~----------~~~~~~l-~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~ 383 (476)
+.++++|||+++.+.. .+....+ ++|.+++++|+++++|+||.+||+|+++++||||||+||+.||+++
T Consensus 300 ~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~ 379 (481)
T PLN02554 300 ERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWF 379 (481)
T ss_pred HHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHc
Confidence 9999999999975311 0011123 6788889999999999999999999999999999999999999999
Q ss_pred CCceeccCCcccchhhHHHHHhhhcceeecc------------cccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHH
Q 011832 384 GVPMICWPYFADQQINSRFVSEVWNLGLDMK------------DVCDRNVVEKMVNDLMV-ERKEEFMRAADRMATMART 450 (476)
Q Consensus 384 GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~------------~~~~~~~l~~~i~~~l~-~~~~~y~~~a~~~~~~~~~ 450 (476)
|||||++|+++||+.||+++++++|+|+.++ ..+++++|+++|+++|+ + +.||+||+++++++++
T Consensus 380 GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~ 457 (481)
T PLN02554 380 GVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHV 457 (481)
T ss_pred CCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 9999999999999999966548999999884 25799999999999997 5 7999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhh
Q 011832 451 TANEGGPSYCNLDRLIDDIKMM 472 (476)
Q Consensus 451 ~~~~~g~~~~~~~~~i~~~~~~ 472 (476)
|+.+||++.+++++|++++.++
T Consensus 458 av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 458 ALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999875
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.6e-62 Score=487.68 Aligned_cols=431 Identities=29% Similarity=0.477 Sum_probs=327.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCC----CCCCCCC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFG-LAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISD----GLPADHP 80 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~~ 80 (476)
.+.||+++|++++||++|++.||+.|+ ++|++|||++++.+...+.+... ..+.+++..+|. ++++..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~------~~~~i~~~~lp~p~~~glp~~~- 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL------NSTGVDIVGLPSPDISGLVDPS- 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc------cCCCceEEECCCccccCCCCCC-
Confidence 357999999999999999999999998 79999999999887655422211 112477887774 333211
Q ss_pred CCCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCC
Q 011832 81 RAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGE 160 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~ 160 (476)
.+....+......+.+.+++++++...+|+|||+|.+..|+..+|+++|||++.|++++++.++.+.+.+.......
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 77 ---AHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred ---ccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 12222222333445677888887643478999999999999999999999999999999888766555432111000
Q ss_pred CCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhh--
Q 011832 161 LPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTK-- 238 (476)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~-- 238 (476)
.+ . ...+...++|++.. ++..+++..+... .........+......+++.+++||+.+||+..+++++..
T Consensus 154 ~~----~-~~~~~~~~iPg~~~-l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~ 225 (481)
T PLN02992 154 EE----H-TVQRKPLAMPGCEP-VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKL 225 (481)
T ss_pred cc----c-ccCCCCcccCCCCc-cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccc
Confidence 00 0 00011224666655 5555555322221 1123334444445667899999999999999999998753
Q ss_pred -----CCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHH
Q 011832 239 -----CPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHG 313 (476)
Q Consensus 239 -----~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a 313 (476)
.++++.|||+....... +.++++.+||++++++++|||||||...++.+++++++.+
T Consensus 226 ~~~~~~~~v~~VGPl~~~~~~~------------------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~g 287 (481)
T PLN02992 226 LGRVARVPVYPIGPLCRPIQSS------------------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWG 287 (481)
T ss_pred cccccCCceEEecCccCCcCCC------------------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHH
Confidence 25799999997532100 1245699999999888999999999999999999999999
Q ss_pred HHhcCCceEEEECCCCCC--------------Cc--hhhH-HHHHHhhcCCc-eEeeccChHHHhhcccccccccccCch
Q 011832 314 LVDSKQRFLWVIRPDSVI--------------GE--GDAL-AELVEGTKERG-LLVSWVPQEEVLAHQAVAGFLTHSGWN 375 (476)
Q Consensus 314 ~~~~~~~~i~~~~~~~~~--------------~~--~~~l-~~~~~~~~~nv-~~~~~~pq~~lL~~~~~~~~I~HGG~~ 375 (476)
|+.++++|||+++.+... .+ ...+ ++|.+|+.++. .+.+|+||.+||+|+++++||||||+|
T Consensus 288 L~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~n 367 (481)
T PLN02992 288 LEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWS 367 (481)
T ss_pred HHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchh
Confidence 999999999999742110 00 1134 67888877655 456999999999999999999999999
Q ss_pred hHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc---ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHH
Q 011832 376 STLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD---VCDRNVVEKMVNDLMV-ERKEEFMRAADRMATMARTT 451 (476)
Q Consensus 376 s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~---~~~~~~l~~~i~~~l~-~~~~~y~~~a~~~~~~~~~~ 451 (476)
|+.||+++|||||++|+++||+.||+++++++|+|+.+++ .++.++|+++|+++|. ++|+.+|++|+++++++++|
T Consensus 368 S~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~A 447 (481)
T PLN02992 368 STLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMS 447 (481)
T ss_pred HHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999668999999963 4899999999999997 45679999999999999999
Q ss_pred Hh--cCCChHHHHHHHHHHHHhh
Q 011832 452 AN--EGGPSYCNLDRLIDDIKMM 472 (476)
Q Consensus 452 ~~--~~g~~~~~~~~~i~~~~~~ 472 (476)
+. +||||.+++++|++.+.+.
T Consensus 448 v~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 448 LSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred hcCCCCCchHHHHHHHHHHHHHH
Confidence 94 6999999999999998764
No 12
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.5e-62 Score=484.87 Aligned_cols=445 Identities=23% Similarity=0.390 Sum_probs=328.0
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecC----CCCCCCC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTIS----DGLPADH 79 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~ 79 (476)
+.++.||+++|++++||++||+.||+.|+.||..|||++++.+..++..... . ..+.+++..++ +++|++.
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~--~---~~~~i~~~~lp~p~~dglp~~~ 77 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS--Q---LSSSITLVSFPLPSVPGLPSSA 77 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc--c---CCCCeeEEECCCCccCCCCCCc
Confidence 3456799999999999999999999999999999999999988766543211 0 11247888887 5677542
Q ss_pred CCCCCcH----HHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHH
Q 011832 80 PRAGDQL----MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEM 155 (476)
Q Consensus 80 ~~~~~~~----~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~ 155 (476)
. ...+. ..++......+.+.+++++++. +++|||+|.+..|+..+|+++|||++.|+++++..++.+.+....
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 78 E-SSTDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred c-cccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 2 12222 1344445556788888998876 789999999999999999999999999999998887776543222
Q ss_pred HhhCCCCCCcCCccccccccccCCCCc-ccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHH
Q 011832 156 IQAGELPMKAYDEDMDRLITKVPGMET-FLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSH 234 (476)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~ 234 (476)
...+..+.. .+.......+.|.... .+...+++.+...............+......+++.+++||+.+||+..+++
T Consensus 155 ~~~~~~~~~--~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~ 232 (472)
T PLN02670 155 MEGGDLRST--AEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDL 232 (472)
T ss_pred hhcccCCCc--cccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHH
Confidence 111211111 1111011112232211 1333444443321111111222233333456688999999999999999999
Q ss_pred HHhhC-CCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHH
Q 011832 235 IRTKC-PKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHG 313 (476)
Q Consensus 235 ~~~~~-p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a 313 (476)
++... ++++.|||++...... .+. ... +. +.++++.+||++++++++|||||||...++.+++.+++.+
T Consensus 233 l~~~~~~~v~~VGPl~~~~~~~-~~~---~~~-----~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~g 302 (472)
T PLN02670 233 LSDLYRKPIIPIGFLPPVIEDD-EED---DTI-----DV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALG 302 (472)
T ss_pred HHHhhCCCeEEEecCCcccccc-ccc---ccc-----cc-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 98865 5899999997531100 000 000 00 0125699999999888999999999999999999999999
Q ss_pred HHhcCCceEEEECCCCCC-Cc-hhhH-HHHHHhhcCCceE-eeccChHHHhhcccccccccccCchhHHHHHhhCCceec
Q 011832 314 LVDSKQRFLWVIRPDSVI-GE-GDAL-AELVEGTKERGLL-VSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMIC 389 (476)
Q Consensus 314 ~~~~~~~~i~~~~~~~~~-~~-~~~l-~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~ 389 (476)
|+.++++|||+++.+... .+ ...+ ++|.+++.++.++ .+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 303 l~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 382 (472)
T PLN02670 303 LEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLIL 382 (472)
T ss_pred HHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEe
Confidence 999999999999853211 11 1234 6788888777665 599999999999999999999999999999999999999
Q ss_pred cCCcccchhhHHHHHhhhcceeeccc-----ccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 011832 390 WPYFADQQINSRFVSEVWNLGLDMKD-----VCDRNVVEKMVNDLMVE-RKEEFMRAADRMATMARTTANEGGPSYCNLD 463 (476)
Q Consensus 390 iP~~~DQ~~na~~v~~~~G~G~~~~~-----~~~~~~l~~~i~~~l~~-~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~ 463 (476)
+|+++||+.||+++ +++|+|+.+.+ .+++++|+++|+++|.+ +|.+||+||+++++++++ .+...++++
T Consensus 383 ~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~ 457 (472)
T PLN02670 383 FPVLNEQGLNTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVD 457 (472)
T ss_pred CcchhccHHHHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHH
Confidence 99999999999999 67899999963 38999999999999974 456899999999999886 677899999
Q ss_pred HHHHHHHhhc
Q 011832 464 RLIDDIKMMS 473 (476)
Q Consensus 464 ~~i~~~~~~~ 473 (476)
+|++.|.++.
T Consensus 458 ~~~~~l~~~~ 467 (472)
T PLN02670 458 ELVHYLRENR 467 (472)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=9e-62 Score=484.18 Aligned_cols=450 Identities=31% Similarity=0.515 Sum_probs=328.8
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecC-----CCCCC
Q 011832 3 EKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTIS-----DGLPA 77 (476)
Q Consensus 3 ~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~~~~ 77 (476)
.|.++.||+++|++++||++||+.||+.|+.+|+.|||++++.+..++...... ...... .++++.++ +++|+
T Consensus 4 ~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~-~~~~~~-~i~~~~lp~p~~~dglp~ 81 (491)
T PLN02534 4 SKAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDR-ARESGL-PIRLVQIPFPCKEVGLPI 81 (491)
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhh-ccccCC-CeEEEEcCCCCccCCCCC
Confidence 355678999999999999999999999999999999999999887665443210 000111 28888887 57776
Q ss_pred CCCCCC--C--cHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhh
Q 011832 78 DHPRAG--D--QLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIP 153 (476)
Q Consensus 78 ~~~~~~--~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 153 (476)
+..... . ++...+......+.+.+.+++.+...+++|||+|.+..|+..+|+++|||++.|++++++....+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 82 GCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred CccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 421111 1 222222233334567888888854347899999999999999999999999999999888776554332
Q ss_pred HHHhhCCCCCCcCCccccccccccCCCCc--ccccCCCCCccccCCCCchHHHHHHHHh-hcCCCCcEEEEcchhhcchH
Q 011832 154 EMIQAGELPMKAYDEDMDRLITKVPGMET--FLRFRDLPSFCRVSDVTDRDLQVLKNAT-QQSPRAHALILNTFEDLEEP 230 (476)
Q Consensus 154 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~ 230 (476)
... ...+.. .+. ....+|++.. .++..+++.+..... ......... .....++.+++||+.+||+.
T Consensus 162 ~~~--~~~~~~--~~~---~~~~iPg~p~~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (491)
T PLN02534 162 LHN--AHLSVS--SDS---EPFVVPGMPQSIEITRAQLPGAFVSLP----DLDDVRNKMREAESTAFGVVVNSFNELEHG 230 (491)
T ss_pred Hhc--ccccCC--CCC---ceeecCCCCccccccHHHCChhhcCcc----cHHHHHHHHHhhcccCCEEEEecHHHhhHH
Confidence 111 111111 110 1112455432 134444443321111 112222222 23345779999999999999
Q ss_pred HHHHHHhhC-CCeeeeCCCcccccccccccccccccccccCCccc-cchhhhhhhcCCCCCeEEEEEeccccccCHHHHH
Q 011832 231 ILSHIRTKC-PKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWE-VDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLI 308 (476)
Q Consensus 231 ~l~~~~~~~-p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~ 308 (476)
.+++++... ++++.|||+........+. .. +...+. .++++.+||++++++++|||||||.....++++.
T Consensus 231 ~l~~l~~~~~~~v~~VGPL~~~~~~~~~~------~~--~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~ 302 (491)
T PLN02534 231 CAEAYEKAIKKKVWCVGPVSLCNKRNLDK------FE--RGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLI 302 (491)
T ss_pred HHHHHHhhcCCcEEEECcccccccccccc------cc--cCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHH
Confidence 999998866 5899999997532110000 00 000011 2356999999998899999999999999999999
Q ss_pred HHHHHHHhcCCceEEEECCCCCCCc-hh-hH-HHHHHhh-cCCceEeeccChHHHhhcccccccccccCchhHHHHHhhC
Q 011832 309 EFWHGLVDSKQRFLWVIRPDSVIGE-GD-AL-AELVEGT-KERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAG 384 (476)
Q Consensus 309 ~~~~a~~~~~~~~i~~~~~~~~~~~-~~-~l-~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~G 384 (476)
+++.+|+.++.+|||+++.+..... .. .+ ++|.+++ +.++.+.+|+||.+||+|+++++||||||+||++||+++|
T Consensus 303 e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~G 382 (491)
T PLN02534 303 ELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSG 382 (491)
T ss_pred HHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcC
Confidence 9999999999999999984311110 11 12 6777775 4566677999999999999999999999999999999999
Q ss_pred CceeccCCcccchhhHHHHHhhhcceeecc-------------c-ccCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHH
Q 011832 385 VPMICWPYFADQQINSRFVSEVWNLGLDMK-------------D-VCDRNVVEKMVNDLMV---ERKEEFMRAADRMATM 447 (476)
Q Consensus 385 vP~l~iP~~~DQ~~na~~v~~~~G~G~~~~-------------~-~~~~~~l~~~i~~~l~---~~~~~y~~~a~~~~~~ 447 (476)
||||++|+++||+.||+++++.+|+|+.+. . ..++++|+++|+++|. ++|+.+|+||++++++
T Consensus 383 vP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~ 462 (491)
T PLN02534 383 VPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVM 462 (491)
T ss_pred CCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999773 1 2789999999999995 4678999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhc
Q 011832 448 ARTTANEGGPSYCNLDRLIDDIKMMS 473 (476)
Q Consensus 448 ~~~~~~~~g~~~~~~~~~i~~~~~~~ 473 (476)
+++|+.+||||++++++|++.|.+..
T Consensus 463 a~~Av~~GGSS~~nl~~fv~~i~~~~ 488 (491)
T PLN02534 463 ARKAMELGGSSHINLSILIQDVLKQQ 488 (491)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999997643
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=7.1e-62 Score=487.77 Aligned_cols=439 Identities=28% Similarity=0.458 Sum_probs=331.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCC----CEEEEEeCCcchh----hhhhcccccccccCCCCeeEEecCCCCCC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAG----LKVTFLNSKHNHE----RLIRYTDIHDRFLQYSEFQFKTISDGLPA 77 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 77 (476)
.|.||+++|++++||++||+.||+.|+.|| +.|||++++.+.. .+...... .. .....+.+..+|+...+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~lp~~~~p 79 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRR-EA-ASGLDIRFHHLPAVEPP 79 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhh-cc-cCCCCEEEEECCCCCCC
Confidence 356999999999999999999999999997 7999999876532 23222110 00 11114889999865322
Q ss_pred CCCCCCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHh
Q 011832 78 DHPRAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQ 157 (476)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~ 157 (476)
... .+...++..+...+.+.+++++++...+++|||+|.+..|+..+|+++|||++.|++++++.++.+.+++....
T Consensus 80 ~~~---e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 156 (480)
T PLN00164 80 TDA---AGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDE 156 (480)
T ss_pred Ccc---ccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcc
Confidence 111 12334555455567788888888653457999999999999999999999999999999988887776543211
Q ss_pred hCCCCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHh
Q 011832 158 AGELPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRT 237 (476)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~ 237 (476)
....+.. . ... .-.+|++.. ++..+++.+..... +...+..........+++.+++||+.+||+..+++++.
T Consensus 157 ~~~~~~~--~--~~~-~~~iPGlp~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 157 EVAVEFE--E--MEG-AVDVPGLPP-VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred cccCccc--c--cCc-ceecCCCCC-CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 1000111 1 001 112666655 66666665443221 11222333333455789999999999999999999987
Q ss_pred h-------CCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHH
Q 011832 238 K-------CPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEF 310 (476)
Q Consensus 238 ~-------~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~ 310 (476)
. .|+++.|||++...... . .+..++++.+||++++++++|||||||....+.+++.++
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~~--~-------------~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~el 293 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFTP--P-------------AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREI 293 (480)
T ss_pred ccccccCCCCceEEeCCCccccccC--C-------------CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHH
Confidence 4 26899999998432110 0 012356799999999888999999999988899999999
Q ss_pred HHHHHhcCCceEEEECCCCCCC--------chhhH-HHHHHhhcCCceEe-eccChHHHhhcccccccccccCchhHHHH
Q 011832 311 WHGLVDSKQRFLWVIRPDSVIG--------EGDAL-AELVEGTKERGLLV-SWVPQEEVLAHQAVAGFLTHSGWNSTLES 380 (476)
Q Consensus 311 ~~a~~~~~~~~i~~~~~~~~~~--------~~~~l-~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HGG~~s~~ea 380 (476)
+.+|+.++.+|||+++.+...+ ....+ ++|.+++.+...++ +|+||.+||+|+++++|||||||||++||
T Consensus 294 a~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Ea 373 (480)
T PLN00164 294 AAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLES 373 (480)
T ss_pred HHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHH
Confidence 9999999999999998542110 01124 67777777766655 99999999999999999999999999999
Q ss_pred HhhCCceeccCCcccchhhHHHHHhhhcceeeccc------ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHH
Q 011832 381 IVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD------VCDRNVVEKMVNDLMVE---RKEEFMRAADRMATMARTT 451 (476)
Q Consensus 381 l~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~------~~~~~~l~~~i~~~l~~---~~~~y~~~a~~~~~~~~~~ 451 (476)
+++|||||++|+++||+.||+++++++|+|+.+.. .+++++|.++|+++|.+ ++..+|++|++++++++++
T Consensus 374 i~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a 453 (480)
T PLN00164 374 LWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKA 453 (480)
T ss_pred HHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988788999998841 36999999999999973 3778999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHhh
Q 011832 452 ANEGGPSYCNLDRLIDDIKMM 472 (476)
Q Consensus 452 ~~~~g~~~~~~~~~i~~~~~~ 472 (476)
+.+|||+.+++++|++.+.+.
T Consensus 454 ~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 454 VEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred hcCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999754
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.8e-61 Score=485.17 Aligned_cols=447 Identities=27% Similarity=0.467 Sum_probs=319.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhccccccc-ccCC-CCeeEEecC---CCCCCCC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDR-FLQY-SEFQFKTIS---DGLPADH 79 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~-~~~~-~~i~~~~l~---~~~~~~~ 79 (476)
.+++||+++|+|++||++|++.||+.|++|||+|||++++.+...+++.+..+.. .... ..+....++ +++|++.
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 4567999999999999999999999999999999999999887666544321000 0110 124445555 3566541
Q ss_pred CCC-------CCcHHHHHH---HHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHH
Q 011832 80 PRA-------GDQLMEMFD---SLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAY 149 (476)
Q Consensus 80 ~~~-------~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~ 149 (476)
... ......++. .....+.+.+++++++. +||+||+|.++.|+..+|+++|||++.|++++++....+
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 111 011122222 22234456667777665 789999999999999999999999999999988777665
Q ss_pred HhhhHHHhhCCCCCCcCCccccccccccCCCCcc--cccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhc
Q 011832 150 FSIPEMIQAGELPMKAYDEDMDRLITKVPGMETF--LRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDL 227 (476)
Q Consensus 150 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 227 (476)
.......+....+. ... ...+|+++.. +....++.. .....+.+......+...+++.+++||+.+|
T Consensus 161 ~~~~~~~~~~~~~~---~~~----~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~l 229 (482)
T PLN03007 161 YCIRVHKPQKKVAS---SSE----PFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYEL 229 (482)
T ss_pred HHHHhcccccccCC---CCc----eeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHH
Confidence 54332111011110 000 0113444310 222222211 1112233333344456678899999999999
Q ss_pred chHHHHHHHhhCC-CeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHH
Q 011832 228 EEPILSHIRTKCP-KVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQ 306 (476)
Q Consensus 228 ~~~~l~~~~~~~p-~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~ 306 (476)
|++.++++++... ++++|||+....+...... ..+ .+.|..+.++.+||++++++++|||||||....+.++
T Consensus 230 e~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~----~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~ 302 (482)
T PLN03007 230 ESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKA----ERG---KKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQ 302 (482)
T ss_pred HHHHHHHHHhccCCCEEEEcccccccccccccc----ccC---CccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHH
Confidence 9999888887664 7999999865322100000 000 0112234679999999888999999999999888999
Q ss_pred HHHHHHHHHhcCCceEEEECCCCCCCc-hhhH-HHHHHhh-cCCceEeeccChHHHhhcccccccccccCchhHHHHHhh
Q 011832 307 LIEFWHGLVDSKQRFLWVIRPDSVIGE-GDAL-AELVEGT-KERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVA 383 (476)
Q Consensus 307 ~~~~~~a~~~~~~~~i~~~~~~~~~~~-~~~l-~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~ 383 (476)
+.+++.+|+.++.+|||+++.+..... ...+ ++|.+++ +.|+++.+|+||.+||+|+++++||||||+||++||+++
T Consensus 303 ~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~ 382 (482)
T PLN03007 303 LFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAA 382 (482)
T ss_pred HHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHc
Confidence 999999999999999999985421111 1123 4676665 567788899999999999999999999999999999999
Q ss_pred CCceeccCCcccchhhHHHHHhhhcceeec--------c-cccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHh
Q 011832 384 GVPMICWPYFADQQINSRFVSEVWNLGLDM--------K-DVCDRNVVEKMVNDLMVE-RKEEFMRAADRMATMARTTAN 453 (476)
Q Consensus 384 GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~--------~-~~~~~~~l~~~i~~~l~~-~~~~y~~~a~~~~~~~~~~~~ 453 (476)
|||||++|+++||+.||+++++.+++|+.+ + ..+++++|+++|+++|.+ ++++||++|+++++++++|+.
T Consensus 383 GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~ 462 (482)
T PLN03007 383 GLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVE 462 (482)
T ss_pred CCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999986645555443 2 257999999999999984 456999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHh
Q 011832 454 EGGPSYCNLDRLIDDIKM 471 (476)
Q Consensus 454 ~~g~~~~~~~~~i~~~~~ 471 (476)
+||+|++++++|++.+.+
T Consensus 463 ~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 463 EGGSSFNDLNKFMEELNS 480 (482)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999999999999999875
No 16
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.4e-61 Score=485.17 Aligned_cols=447 Identities=23% Similarity=0.370 Sum_probs=320.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCcchh-hhhhcccccccccCCCCeeEEecCCCCCCCCC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAG---LKVTFLNSKHNHE-RLIRYTDIHDRFLQYSEFQFKTISDGLPADHP 80 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rG---H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 80 (476)
+++.||+++|++++||++||+.||+.|+.+| +.||++++..+.. ....... ......+.+++..+|+...+...
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~p~~~ 78 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLK--SLIASEPRIRLVTLPEVQDPPPM 78 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHh--hcccCCCCeEEEECCCCCCCccc
Confidence 3567999999999999999999999999998 4577777644322 1111000 00112235899999864321111
Q ss_pred CC-CCcHHHHHHHHHhhchHHHHHHHh----cC---CC-CceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHh
Q 011832 81 RA-GDQLMEMFDSLSLNTRPLLKQMLI----DT---SP-PVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFS 151 (476)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~~~l~~ll~----~~---~~-~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~ 151 (476)
+. .......+..+...+.+.+++.++ +. .. +++|||+|.+..|+.++|+++|||++.|++++++.++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~ 158 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKY 158 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 10 111111222222333344444433 21 11 45999999999999999999999999999999988887765
Q ss_pred hhHHHhhCCCCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHH
Q 011832 152 IPEMIQAGELPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPI 231 (476)
Q Consensus 152 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~ 231 (476)
++..... .+......... ....+|++...++..+++.+..... ......+.......++.+++||+.+||+..
T Consensus 159 ~~~~~~~--~~~~~~~~~~~-~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 159 LPERHRK--TASEFDLSSGE-EELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHhccc--cccccccCCCC-CeeECCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 5432111 11000000000 1123566621145555554332211 122233344456778999999999999999
Q ss_pred HHHHHhh---CCCeeeeCCCcccccccccccccccccccccCCcc-ccchhhhhhhcCCCCCeEEEEEeccccccCHHHH
Q 011832 232 LSHIRTK---CPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLW-EVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQL 307 (476)
Q Consensus 232 l~~~~~~---~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~ 307 (476)
+++++.. .|+++.|||++....... . .++ ..+.++.+||++++++++|||||||....+.+++
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~~-~------------~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~ 298 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRTS-P------------NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQI 298 (475)
T ss_pred HHHHHhhcccCCeeEEeccccccccccC-C------------CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHH
Confidence 9998764 478999999986432100 0 011 1235799999999888999999999988899999
Q ss_pred HHHHHHHHhcCCceEEEECCCCCC--CchhhH-HHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhC
Q 011832 308 IEFWHGLVDSKQRFLWVIRPDSVI--GEGDAL-AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAG 384 (476)
Q Consensus 308 ~~~~~a~~~~~~~~i~~~~~~~~~--~~~~~l-~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~G 384 (476)
.+++.+|+.++.+|||+++.+... .....+ ++|.+++.+++++++|+||.+||+|+++++|||||||||++||+++|
T Consensus 299 ~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~G 378 (475)
T PLN02167 299 KEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFG 378 (475)
T ss_pred HHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcC
Confidence 999999999999999999753211 001134 67888888888999999999999999999999999999999999999
Q ss_pred CceeccCCcccchhhHHHHHhhhcceeeccc--------ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCC
Q 011832 385 VPMICWPYFADQQINSRFVSEVWNLGLDMKD--------VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGG 456 (476)
Q Consensus 385 vP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~--------~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g 456 (476)
||||++|+++||+.||+++++++|+|+.+.. .+++++|+++|+++|.++ ..||++|+++++++++++.+||
T Consensus 379 vP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~r~~a~~~~~~~~~av~~gG 457 (475)
T PLN02167 379 VPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-DVPRKKVKEIAEAARKAVMDGG 457 (475)
T ss_pred CCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999875588999998841 469999999999999841 4899999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhcc
Q 011832 457 PSYCNLDRLIDDIKMMSS 474 (476)
Q Consensus 457 ~~~~~~~~~i~~~~~~~~ 474 (476)
++.+++++|++.|.+.++
T Consensus 458 sS~~~l~~~v~~i~~~~~ 475 (475)
T PLN02167 458 SSFVAVKRFIDDLLGDHS 475 (475)
T ss_pred cHHHHHHHHHHHHHhcCC
Confidence 999999999999988653
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-61 Score=476.48 Aligned_cols=428 Identities=27% Similarity=0.472 Sum_probs=317.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEE--EeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCC-CC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAG--LKVTF--LNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPAD-HP 80 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rG--H~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~ 80 (476)
.+.||+++|++++||++||++||+.|+.+| +.||+ .+++.+...+..... ......+.+++..+|+..+.. ..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~lp~~~~~~~~~ 79 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYIS--SVSSSFPSITFHHLPAVTPYSSSS 79 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhc--cccCCCCCeEEEEcCCCCCCCCcc
Confidence 456899999999999999999999999998 45555 555433222221110 101112358999998765421 11
Q ss_pred CCCCcHHHHHHHHHhhchHHHHHHHhcC--CCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhh
Q 011832 81 RAGDQLMEMFDSLSLNTRPLLKQMLIDT--SPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQA 158 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~ 158 (476)
....+....+......+.+.+.+++++. .++++|||+|.+..|+..+|+++|||++.|++++++.++.+.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~-- 157 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID-- 157 (451)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcc--
Confidence 1112233333334445667777777743 134699999999999999999999999999999999888877654321
Q ss_pred CCCCCCcCCccccc-cccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHh
Q 011832 159 GELPMKAYDEDMDR-LITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRT 237 (476)
Q Consensus 159 ~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~ 237 (476)
...|.. ...+ ..-.+|++.. ++..+++.+..... ....+...........++.+++||+.+||+..+++++.
T Consensus 158 ~~~~~~----~~~~~~~v~iPg~p~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~ 230 (451)
T PLN03004 158 ETTPGK----NLKDIPTVHIPGVPP-MKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITE 230 (451)
T ss_pred cccccc----ccccCCeecCCCCCC-CChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHh
Confidence 001110 0001 1124677665 66677776543221 12233344444556788999999999999999999987
Q ss_pred hC--CCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHH
Q 011832 238 KC--PKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLV 315 (476)
Q Consensus 238 ~~--p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~ 315 (476)
.. ++++.|||++...... . ...+ .+.++.+||++++++++|||||||...++.+++++++.+|+
T Consensus 231 ~~~~~~v~~vGPl~~~~~~~--~-----------~~~~-~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~ 296 (451)
T PLN03004 231 ELCFRNIYPIGPLIVNGRIE--D-----------RNDN-KAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLE 296 (451)
T ss_pred cCCCCCEEEEeeeccCcccc--c-----------cccc-hhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 53 5899999997422100 0 0011 23569999999988999999999999999999999999999
Q ss_pred hcCCceEEEECCCCCCC----chhh-H-HHHHHhhcC-CceEeeccChHHHhhcccccccccccCchhHHHHHhhCCcee
Q 011832 316 DSKQRFLWVIRPDSVIG----EGDA-L-AELVEGTKE-RGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMI 388 (476)
Q Consensus 316 ~~~~~~i~~~~~~~~~~----~~~~-l-~~~~~~~~~-nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l 388 (476)
.++++|||+++.+.... .... + ++|.+|+.+ |+.+.+|+||.+||+|+++++||||||+||+.||+++|||||
T Consensus 297 ~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v 376 (451)
T PLN03004 297 KSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMV 376 (451)
T ss_pred HCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEE
Confidence 99999999998531100 0112 4 688888876 566779999999999999999999999999999999999999
Q ss_pred ccCCcccchhhHHHHHhhhcceeeccc----ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 011832 389 CWPYFADQQINSRFVSEVWNLGLDMKD----VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYC 460 (476)
Q Consensus 389 ~iP~~~DQ~~na~~v~~~~G~G~~~~~----~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~ 460 (476)
++|+++||+.||+++++++|+|+.++. .+++++|+++|+++|++ ++||++|++++++.+.|+.+||||++
T Consensus 377 ~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~--~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 377 AWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE--CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred eccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999667899999963 47999999999999987 78999999999999999999999864
No 18
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-60 Score=471.68 Aligned_cols=436 Identities=24% Similarity=0.386 Sum_probs=326.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCc
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLA-GLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQ 85 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (476)
+.||+++|+|++||++||+.||+.|+.+ |..|||+++..+...+...... ......+.+++..+|+...++......+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAI-HAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccc-ccccCCCceEEEECCCCccccCCCCCcc
Confidence 4599999999999999999999999987 9999999987665443111101 1110112488888874322210010113
Q ss_pred HHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCC-eEEEecCchHHHHHHHhhhHHHhhCCCCCC
Q 011832 86 LMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIP-VIHFRAISACSFWAYFSIPEMIQAGELPMK 164 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP-~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 164 (476)
....+......+.+.+++++++...+++|||+|.+..|+.++|+++||| .+.|+++.++....+++++.... ..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~--~~~~~ 159 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT--VVEGE 159 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--ccccc
Confidence 3333334445678889999986534689999999999999999999999 57777777766656655443211 11110
Q ss_pred cCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhh------
Q 011832 165 AYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTK------ 238 (476)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~------ 238 (476)
..... ..-++|++.. ++..+++....... ........+......+++.+++||+.+||+..+++++..
T Consensus 160 --~~~~~-~~~~vPg~p~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~ 233 (470)
T PLN03015 160 --YVDIK-EPLKIPGCKP-VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRV 233 (470)
T ss_pred --cCCCC-CeeeCCCCCC-CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccc
Confidence 00001 1124677765 66666665433221 111222334444578899999999999999999999875
Q ss_pred -CCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhc
Q 011832 239 -CPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDS 317 (476)
Q Consensus 239 -~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~ 317 (476)
.++++.|||++..... . +.++++.+||++++++++|||||||...++.+++.+++.+|+.+
T Consensus 234 ~~~~v~~VGPl~~~~~~----------~--------~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s 295 (470)
T PLN03015 234 MKVPVYPIGPIVRTNVH----------V--------EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELS 295 (470)
T ss_pred cCCceEEecCCCCCccc----------c--------cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhC
Confidence 2569999999842110 0 12347999999998899999999999999999999999999999
Q ss_pred CCceEEEECCCCC--------CC-chhhH-HHHHHhhcCCceE-eeccChHHHhhcccccccccccCchhHHHHHhhCCc
Q 011832 318 KQRFLWVIRPDSV--------IG-EGDAL-AELVEGTKERGLL-VSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVP 386 (476)
Q Consensus 318 ~~~~i~~~~~~~~--------~~-~~~~l-~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP 386 (476)
+++|||+++.+.. .. ....+ ++|.+|+.++.++ .+|+||.+||+|+++++|||||||||+.||+++|||
T Consensus 296 ~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP 375 (470)
T PLN03015 296 GQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVP 375 (470)
T ss_pred CCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCC
Confidence 9999999974311 00 11134 6777787777764 599999999999999999999999999999999999
Q ss_pred eeccCCcccchhhHHHHHhhhcceeecc-----cccCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHHhcCCCh
Q 011832 387 MICWPYFADQQINSRFVSEVWNLGLDMK-----DVCDRNVVEKMVNDLMV---ERKEEFMRAADRMATMARTTANEGGPS 458 (476)
Q Consensus 387 ~l~iP~~~DQ~~na~~v~~~~G~G~~~~-----~~~~~~~l~~~i~~~l~---~~~~~y~~~a~~~~~~~~~~~~~~g~~ 458 (476)
||++|+++||+.||+++++.+|+|+.+. ..+++++|+++|+++|. ++|..+|+||+++++++++|+.+||||
T Consensus 376 ~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS 455 (470)
T PLN03015 376 IVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSS 455 (470)
T ss_pred EEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999988999999994 25899999999999994 467899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011832 459 YCNLDRLIDDI 469 (476)
Q Consensus 459 ~~~~~~~i~~~ 469 (476)
++++++|++++
T Consensus 456 ~~nl~~~~~~~ 466 (470)
T PLN03015 456 YNSLFEWAKRC 466 (470)
T ss_pred HHHHHHHHHhc
Confidence 99999999886
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=5.8e-61 Score=475.09 Aligned_cols=417 Identities=20% Similarity=0.320 Sum_probs=310.7
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEec--C--CCCCCCC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTI--S--DGLPADH 79 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~ 79 (476)
|..++||+++|++++||++|+++||+.|+++||+|||++++.+...+...+. ..+.+++..+ + +++|++.
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a------~~~~i~~~~l~~p~~dgLp~g~ 74 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL------FPDSIVFHPLTIPPVNGLPAGA 74 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC------CCCceEEEEeCCCCccCCCCCc
Confidence 4567899999999999999999999999999999999999876665544321 0112555544 3 4566542
Q ss_pred CCCCC----cHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHH
Q 011832 80 PRAGD----QLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEM 155 (476)
Q Consensus 80 ~~~~~----~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~ 155 (476)
. ... ++...+......+.+.+++++++. ++||||+| +..|+..+|.++|||++.|+++++.... +.+.+.
T Consensus 75 ~-~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~- 148 (442)
T PLN02208 75 E-TTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG- 148 (442)
T ss_pred c-cccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc-
Confidence 2 111 222333333455677888888776 78999999 5779999999999999999999887543 332211
Q ss_pred HhhCCCCCCcCCccccccccccCCCCc---ccccCCCCCccccCCCCchHHHHHH-HHhhcCCCCcEEEEcchhhcchHH
Q 011832 156 IQAGELPMKAYDEDMDRLITKVPGMET---FLRFRDLPSFCRVSDVTDRDLQVLK-NATQQSPRAHALILNTFEDLEEPI 231 (476)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~l~~~~ 231 (476)
...+.. .|+++. .++..+++.+. . ......... +......+++.+++||+.+||+..
T Consensus 149 ---~~~~~~------------~pglp~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~ 209 (442)
T PLN02208 149 ---GKLGVP------------PPGYPSSKVLFRENDAHALA---T-LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKF 209 (442)
T ss_pred ---cccCCC------------CCCCCCcccccCHHHcCccc---c-cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHH
Confidence 000000 133322 02333333221 1 111222222 222455689999999999999999
Q ss_pred HHHHHhh-CCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHH
Q 011832 232 LSHIRTK-CPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEF 310 (476)
Q Consensus 232 l~~~~~~-~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~ 310 (476)
+++++.. .|+++.|||++...... . ..++++.+||++++++++|||||||...++.+++.++
T Consensus 210 ~~~~~~~~~~~v~~vGpl~~~~~~~--~---------------~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~ 272 (442)
T PLN02208 210 CDYISRQYHKKVLLTGPMFPEPDTS--K---------------PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQEL 272 (442)
T ss_pred HHHHHhhcCCCEEEEeecccCcCCC--C---------------CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH
Confidence 9988765 47999999998643210 0 0246799999999888999999999998899999999
Q ss_pred HHHHHhcCCceEEEECCCCCC-CchhhH-HHHHHhhcC-CceEeeccChHHHhhcccccccccccCchhHHHHHhhCCce
Q 011832 311 WHGLVDSKQRFLWVIRPDSVI-GEGDAL-AELVEGTKE-RGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPM 387 (476)
Q Consensus 311 ~~a~~~~~~~~i~~~~~~~~~-~~~~~l-~~~~~~~~~-nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~ 387 (476)
+.+++..+.+++|+++.+... .....+ ++|.+++.+ |+.+.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 273 ~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~ 352 (442)
T PLN02208 273 CLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQM 352 (442)
T ss_pred HHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCE
Confidence 999888888889988754111 111234 678777665 55666999999999999999999999999999999999999
Q ss_pred eccCCcccchhhHHHHHhhhcceeeccc-c---cCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 011832 388 ICWPYFADQQINSRFVSEVWNLGLDMKD-V---CDRNVVEKMVNDLMVE---RKEEFMRAADRMATMARTTANEGGPSYC 460 (476)
Q Consensus 388 l~iP~~~DQ~~na~~v~~~~G~G~~~~~-~---~~~~~l~~~i~~~l~~---~~~~y~~~a~~~~~~~~~~~~~~g~~~~ 460 (476)
|++|+++||+.||+++++.+|+|+.+++ + +++++|+++|++++++ +|+.+|++|+++++++. ++|+|.+
T Consensus 353 l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~ 428 (442)
T PLN02208 353 VLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTG 428 (442)
T ss_pred EecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHH
Confidence 9999999999999998677899999974 3 8999999999999963 36779999999999974 3789999
Q ss_pred HHHHHHHHHHhh
Q 011832 461 NLDRLIDDIKMM 472 (476)
Q Consensus 461 ~~~~~i~~~~~~ 472 (476)
++++|++.++++
T Consensus 429 ~l~~~v~~l~~~ 440 (442)
T PLN02208 429 YVDKFVEELQEY 440 (442)
T ss_pred HHHHHHHHHHHh
Confidence 999999999764
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.7e-60 Score=467.56 Aligned_cols=425 Identities=22% Similarity=0.373 Sum_probs=317.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecC--CCCCCCCCCC-
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTIS--DGLPADHPRA- 82 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~~~~~- 82 (476)
-++||+++|++++||++||+.||+.|+.+|+.|||++++.+...+.... .....-.+.+..+| +++|++....
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~----~~~~~~~v~~~~~p~~~glp~g~e~~~ 79 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLN----LFPHNIVFRSVTVPHVDGLPVGTETVS 79 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccc----cCCCCceEEEEECCCcCCCCCcccccc
Confidence 3689999999999999999999999999999999999988765543310 00000126666776 6676641110
Q ss_pred --CCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCC
Q 011832 83 --GDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGE 160 (476)
Q Consensus 83 --~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~ 160 (476)
..+....+......+.+.+.++++.. ++|+||+|. ..|+.++|+++|||++.|++++++.+..+.. +. ..
T Consensus 80 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~----~~ 151 (453)
T PLN02764 80 EIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG----GE 151 (453)
T ss_pred cCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----cc
Confidence 11112223333334578888888876 679999994 7799999999999999999999887776542 10 11
Q ss_pred CCCCcCCccccccccccCCCCc---ccccCCCCCcccc-C-CCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHH
Q 011832 161 LPMKAYDEDMDRLITKVPGMET---FLRFRDLPSFCRV-S-DVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHI 235 (476)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~ 235 (476)
.+.. .|+++. .++...++.+... . ...+.......+.......++.+++||+.+||+.+++++
T Consensus 152 ~~~~------------~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~ 219 (453)
T PLN02764 152 LGVP------------PPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYI 219 (453)
T ss_pred CCCC------------CCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHH
Confidence 1100 122221 0222333322110 0 111122233333335567889999999999999999999
Q ss_pred HhhC-CCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHH
Q 011832 236 RTKC-PKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGL 314 (476)
Q Consensus 236 ~~~~-p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~ 314 (476)
+... ++++.|||++...... . ..++++.+|||+++++++|||||||...++.+++.++..+|
T Consensus 220 ~~~~~~~v~~VGPL~~~~~~~--~---------------~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL 282 (453)
T PLN02764 220 EKHCRKKVLLTGPVFPEPDKT--R---------------ELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGM 282 (453)
T ss_pred HhhcCCcEEEeccCccCcccc--c---------------cchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHH
Confidence 8864 5899999997532100 0 02457999999999999999999999989999999999999
Q ss_pred HhcCCceEEEECCCCCCC-chhhH-HHHHHhhcCCceEe-eccChHHHhhcccccccccccCchhHHHHHhhCCceeccC
Q 011832 315 VDSKQRFLWVIRPDSVIG-EGDAL-AELVEGTKERGLLV-SWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWP 391 (476)
Q Consensus 315 ~~~~~~~i~~~~~~~~~~-~~~~l-~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP 391 (476)
+..+.+|+|+++.+.... ....+ ++|.+++.++.+++ +|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 283 ~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P 362 (453)
T PLN02764 283 ELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVP 362 (453)
T ss_pred HhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 999999999998532111 12245 68888887777655 9999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHhhhcceeeccc----ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 011832 392 YFADQQINSRFVSEVWNLGLDMKD----VCDRNVVEKMVNDLMVE---RKEEFMRAADRMATMARTTANEGGPSYCNLDR 464 (476)
Q Consensus 392 ~~~DQ~~na~~v~~~~G~G~~~~~----~~~~~~l~~~i~~~l~~---~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~ 464 (476)
+++||+.||+++++.+|+|+.+.. .++.++|+++|+++|++ ++..+|++++++++++++ +|++.+++++
T Consensus 363 ~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~ 438 (453)
T PLN02764 363 QLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDN 438 (453)
T ss_pred cccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHH
Confidence 999999999999777899998742 48999999999999963 356799999999999754 8999999999
Q ss_pred HHHHHHhhccC
Q 011832 465 LIDDIKMMSSQ 475 (476)
Q Consensus 465 ~i~~~~~~~~~ 475 (476)
|++.+.++.++
T Consensus 439 lv~~~~~~~~~ 449 (453)
T PLN02764 439 FIESLQDLVSG 449 (453)
T ss_pred HHHHHHHhccc
Confidence 99999987653
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.7e-59 Score=465.18 Aligned_cols=418 Identities=22% Similarity=0.347 Sum_probs=311.3
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEec--C--CCCCCCC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTI--S--DGLPADH 79 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~ 79 (476)
|.++.||+++|++++||++||++||+.|+++|++|||++++.+...+..... ..+.+++..+ | +++|++.
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~------~~~~i~~~~i~lP~~dGLP~g~ 74 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL------FPDSIVFEPLTLPPVDGLPFGA 74 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc------CCCceEEEEecCCCcCCCCCcc
Confidence 4567899999999999999999999999999999999999877655543321 0113666444 3 5666642
Q ss_pred CCCCCcH----HHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHH
Q 011832 80 PRAGDQL----MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEM 155 (476)
Q Consensus 80 ~~~~~~~----~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~ 155 (476)
+...++ ...+........+.+++++... +|||||+|. ..|+..+|+++|||++.|+++++...+.+.+ +..
T Consensus 75 -e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~ 149 (446)
T PLN00414 75 -ETASDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRA 149 (446)
T ss_pred -cccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHh
Confidence 222222 2223333344567777777665 789999995 7799999999999999999999887776554 110
Q ss_pred HhhCCCCCCcCCccccccccccCCCCc---ccccCC--CCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchH
Q 011832 156 IQAGELPMKAYDEDMDRLITKVPGMET---FLRFRD--LPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEP 230 (476)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 230 (476)
... .| .|+++. .++... ++.++. . ......+..+...+++.+++||+.+||+.
T Consensus 150 -~~~-~~--------------~pg~p~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 207 (446)
T PLN00414 150 -ELG-FP--------------PPDYPLSKVALRGHDANVCSLFA--N----SHELFGLITKGLKNCDVVSIRTCVELEGN 207 (446)
T ss_pred -hcC-CC--------------CCCCCCCcCcCchhhcccchhhc--c----cHHHHHHHHHhhccCCEEEEechHHHHHH
Confidence 000 00 122111 011111 111110 0 11223333455667999999999999999
Q ss_pred HHHHHHhhC-CCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHH
Q 011832 231 ILSHIRTKC-PKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIE 309 (476)
Q Consensus 231 ~l~~~~~~~-p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~ 309 (476)
.+++++... ++++.|||+....... .. + ..++++.+|||+++++++|||||||....+.+++.+
T Consensus 208 ~~~~~~~~~~~~v~~VGPl~~~~~~~--------~~-----~--~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e 272 (446)
T PLN00414 208 LCDFIERQCQRKVLLTGPMLPEPQNK--------SG-----K--PLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQE 272 (446)
T ss_pred HHHHHHHhcCCCeEEEcccCCCcccc--------cC-----c--ccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHH
Confidence 999998865 4799999997532110 00 0 123568999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEECCCCCCC-chhhH-HHHHHhhcCCceEe-eccChHHHhhcccccccccccCchhHHHHHhhCCc
Q 011832 310 FWHGLVDSKQRFLWVIRPDSVIG-EGDAL-AELVEGTKERGLLV-SWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVP 386 (476)
Q Consensus 310 ~~~a~~~~~~~~i~~~~~~~~~~-~~~~l-~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP 386 (476)
+..+|+..+.+|+|++..+...+ ....+ ++|.+++.++.+++ +|+||.+||+|+++++|||||||||++||+++|||
T Consensus 273 ~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP 352 (446)
T PLN00414 273 FCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQ 352 (446)
T ss_pred HHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCC
Confidence 99999999999999998532111 12245 78999998888876 99999999999999999999999999999999999
Q ss_pred eeccCCcccchhhHHHHHhhhcceeeccc----ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhcCCChH
Q 011832 387 MICWPYFADQQINSRFVSEVWNLGLDMKD----VCDRNVVEKMVNDLMVE---RKEEFMRAADRMATMARTTANEGGPSY 459 (476)
Q Consensus 387 ~l~iP~~~DQ~~na~~v~~~~G~G~~~~~----~~~~~~l~~~i~~~l~~---~~~~y~~~a~~~~~~~~~~~~~~g~~~ 459 (476)
||++|+++||+.||+++++++|+|+.+.+ .+++++|+++|+++|.+ ++..+|++|+++++.+.+ +||++
T Consensus 353 ~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s- 428 (446)
T PLN00414 353 IVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS- 428 (446)
T ss_pred EEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-
Confidence 99999999999999999778999999953 38999999999999963 356799999999999644 56633
Q ss_pred HHHHHHHHHHHhhc
Q 011832 460 CNLDRLIDDIKMMS 473 (476)
Q Consensus 460 ~~~~~~i~~~~~~~ 473 (476)
..+++|++.+++..
T Consensus 429 s~l~~~v~~~~~~~ 442 (446)
T PLN00414 429 GYADKFVEALENEV 442 (446)
T ss_pred HHHHHHHHHHHHhc
Confidence 44899999986643
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.7e-56 Score=449.40 Aligned_cols=417 Identities=18% Similarity=0.207 Sum_probs=301.3
Q ss_pred CCCEEEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecC---CCCC----C
Q 011832 6 KSPHILIF-PLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTIS---DGLP----A 77 (476)
Q Consensus 6 ~~~~il~~-~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~---~~~~----~ 77 (476)
+..||+++ |.++.||+..+.+|+++|++|||+||++++.... .. .. . ....++...++ +... .
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~-~~----~---~~~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YY-AS----H---LCGNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-cc-cc----C---CCCCEEEEEcCCChHHHHHHHhh
Confidence 35678766 8899999999999999999999999999874321 10 00 0 01123333322 0000 0
Q ss_pred -CCCCC---CCcH----HHHHHHHHhhc-----hHHHHHHHhcCCCCceEEEECCCcchHHHHHHHc-CCCeEEEecCch
Q 011832 78 -DHPRA---GDQL----MEMFDSLSLNT-----RPLLKQMLIDTSPPVSCIIGDACMEFVVDVATEL-EIPVIHFRAISA 143 (476)
Q Consensus 78 -~~~~~---~~~~----~~~~~~~~~~~-----~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l-~iP~i~~~~~~~ 143 (476)
..+.. ..+. ...+..+...| ++.+.++|+....+||+||+|.+..|+..+|+++ ++|.|.+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00000 0000 11111222233 5666777762224899999999888999999999 999999888665
Q ss_pred HHHHHHHhhh-HHHhhCCCCCCcCCccccccccccCCCCcccccCCCCCcccc-CCCCchHHHHH-HH----HhhcCCCC
Q 011832 144 CSFWAYFSIP-EMIQAGELPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRV-SDVTDRDLQVL-KN----ATQQSPRA 216 (476)
Q Consensus 144 ~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~----~~~~~~~~ 216 (476)
.... ....+ .+.+++|.|.. .+.+.+.|+++.|+.|++........... ....+...+.. .. ..+...+.
T Consensus 170 ~~~~-~~~~gg~p~~~syvP~~--~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~ 246 (507)
T PHA03392 170 LAEN-FETMGAVSRHPVYYPNL--WRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRV 246 (507)
T ss_pred chhH-HHhhccCCCCCeeeCCc--ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCC
Confidence 4433 23334 77778899987 77888899999999984221111000000 01111111111 11 12445678
Q ss_pred cEEEEcchhhcchHHHHHHHhhCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEe
Q 011832 217 HALILNTFEDLEEPILSHIRTKCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSF 296 (476)
Q Consensus 217 ~~~l~~s~~~l~~~~l~~~~~~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~ 296 (476)
+++|+|+++.+++| ||.+|++++|||++.++... .+ .++++.+|++++ ++++|||||
T Consensus 247 ~l~lvns~~~~d~~-----rp~~p~v~~vGgi~~~~~~~-------~~----------l~~~l~~fl~~~-~~g~V~vS~ 303 (507)
T PHA03392 247 QLLFVNVHPVFDNN-----RPVPPSVQYLGGLHLHKKPP-------QP----------LDDYLEEFLNNS-TNGVVYVSF 303 (507)
T ss_pred cEEEEecCccccCC-----CCCCCCeeeecccccCCCCC-------CC----------CCHHHHHHHhcC-CCcEEEEEC
Confidence 89999999999999 99999999999999753211 01 356789999886 457999999
Q ss_pred cccc---ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccC
Q 011832 297 GSIT---LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSG 373 (476)
Q Consensus 297 Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG 373 (476)
||.+ ..+.+.++.++++++.++.+|||+++++.. + ..+|+|+++.+|+||.+||+|+.+++||||||
T Consensus 304 GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-------~---~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG 373 (507)
T PHA03392 304 GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-------A---INLPANVLTQKWFPQRAVLKHKNVKAFVTQGG 373 (507)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-------c---ccCCCceEEecCCCHHHHhcCCCCCEEEecCC
Confidence 9986 357889999999999999999999985421 1 13689999999999999999999999999999
Q ss_pred chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 011832 374 WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTA 452 (476)
Q Consensus 374 ~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~ 452 (476)
+||+.||+++|||+|++|+++||+.||+|+ +++|+|+.+++ .++.++|.++|+++|+| ++||+||+++++.+++.
T Consensus 374 ~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~~~t~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~- 449 (507)
T PHA03392 374 VQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTVTVSAAQLVLAIVDVIEN--PKYRKNLKELRHLIRHQ- 449 (507)
T ss_pred cccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccCCcCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999 78899999985 89999999999999998 89999999999999872
Q ss_pred hcCCChHHHHHHHHHHHHhhc
Q 011832 453 NEGGPSYCNLDRLIDDIKMMS 473 (476)
Q Consensus 453 ~~~g~~~~~~~~~i~~~~~~~ 473 (476)
.-+..+.+-.-++...+..
T Consensus 450 --p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 450 --PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred --CCCHHHHHHHHHHHHHhCC
Confidence 3334555556666665543
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.8e-57 Score=465.56 Aligned_cols=391 Identities=26% Similarity=0.371 Sum_probs=249.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCC-Cc--
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAG-DQ-- 85 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~-~~-- 85 (476)
||+++|. ++||+.++.+|+++|++|||+||++++.. ...+.... ...+++..++...+..+.... .+
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSP-SSSLNPSK--------PSNIRFETYPDPYPEEEFEEIFPEFI 71 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHH-HHT--------------S-CCEEEE-----TT------TTHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeec-cccccccc--------ccceeeEEEcCCcchHHHhhhhHHHH
Confidence 7899984 88999999999999999999999999843 22221111 123566666544433221111 11
Q ss_pred ------------HHHHHHHH-------Hhhc-----hHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecC
Q 011832 86 ------------LMEMFDSL-------SLNT-----RPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAI 141 (476)
Q Consensus 86 ------------~~~~~~~~-------~~~~-----~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~ 141 (476)
....+... ...| ++.+.+.+++. ++|++|+|.+..|+..+|+.+++|.+.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 72 SKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 11111111 1111 12222233344 7999999999889999999999999987654
Q ss_pred chHHHHHHHhhhHHHhhCCCCCCcCCccccccccccCCCCcccccC---CCCCccccC--CCCchHHHHHHHHhhcCCCC
Q 011832 142 SACSFWAYFSIPEMIQAGELPMKAYDEDMDRLITKVPGMETFLRFR---DLPSFCRVS--DVTDRDLQVLKNATQQSPRA 216 (476)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (476)
...........+.+.+++|.|.. .+.+.+.|++..|+.|++... .+....... ..............+.+.+.
T Consensus 150 ~~~~~~~~~~~g~p~~psyvP~~--~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (500)
T PF00201_consen 150 TPMYDLSSFSGGVPSPPSYVPSM--FSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNA 227 (500)
T ss_dssp CSCSCCTCCTSCCCTSTTSTTCB--CCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHH
T ss_pred cccchhhhhccCCCCChHHhccc--cccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHH
Confidence 33222111112445667888887 777888999999998842110 000000000 00000000001112333456
Q ss_pred cEEEEcchhhcchHHHHHHHhhCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEe
Q 011832 217 HALILNTFEDLEEPILSHIRTKCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSF 296 (476)
Q Consensus 217 ~~~l~~s~~~l~~~~l~~~~~~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~ 296 (476)
+++++|+++.+++| +|..|++++|||++..+.++ .+.++++|++...++++|||||
T Consensus 228 ~l~l~ns~~~ld~p-----rp~~p~v~~vGgl~~~~~~~-------------------l~~~~~~~~~~~~~~~vv~vsf 283 (500)
T PF00201_consen 228 SLVLINSHPSLDFP-----RPLLPNVVEVGGLHIKPAKP-------------------LPEELWNFLDSSGKKGVVYVSF 283 (500)
T ss_dssp HHCCSSTEEE---------HHHHCTSTTGCGC-S----T-------------------CHHHHHHHTSTTTTTEEEEEE-
T ss_pred HHHhhhccccCcCC-----cchhhcccccCccccccccc-------------------cccccchhhhccCCCCEEEEec
Confidence 78899999999988 99999999999999866532 2456889998855789999999
Q ss_pred ccccc-cCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccCch
Q 011832 297 GSITL-LKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWN 375 (476)
Q Consensus 297 Gs~~~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~ 375 (476)
||.+. .+.+..+.+++++++++++|||++++... +.+|+|+++++|+||.+||+|+++++||||||+|
T Consensus 284 Gs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~-----------~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~ 352 (500)
T PF00201_consen 284 GSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP-----------ENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLN 352 (500)
T ss_dssp TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG-----------CHHHTTEEEESS--HHHHHTSTTEEEEEES--HH
T ss_pred CcccchhHHHHHHHHHHHHhhCCCccccccccccc-----------ccccceEEEeccccchhhhhcccceeeeeccccc
Confidence 99974 45555888999999999999999986411 2378999999999999999999999999999999
Q ss_pred hHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 011832 376 STLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTT 451 (476)
Q Consensus 376 s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~ 451 (476)
|+.||+++|||+|++|+++||+.||+++ ++.|+|+.+++ ++|.++|.++|+++|+| ++|++||+++++++++.
T Consensus 353 s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~~~~~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 353 STQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKNDLTEEELRAAIREVLEN--PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGGC-SHHHHHHHHHHHHHS--HHHHHHHHHHHHTTT--
T ss_pred hhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEecCCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999 77899999995 89999999999999998 89999999999999873
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.6e-42 Score=343.78 Aligned_cols=373 Identities=20% Similarity=0.267 Sum_probs=251.9
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCC-C--CCcHHHH
Q 011832 13 FPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPR-A--GDQLMEM 89 (476)
Q Consensus 13 ~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~-~--~~~~~~~ 89 (476)
+.+|++||++|+++||++|++|||+|+|++++.+.+.+++.+ +.+..++......... . ..+....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAG-----------AEFVLYGSALPPPDNPPENTEEEPIDI 69 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcC-----------CEEEecCCcCccccccccccCcchHHH
Confidence 357999999999999999999999999999988777776665 4555555432221000 0 0233334
Q ss_pred HHHHHhhchHHHH---HHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCCcC
Q 011832 90 FDSLSLNTRPLLK---QMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAY 166 (476)
Q Consensus 90 ~~~~~~~~~~~l~---~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 166 (476)
...+...+...+. +.+++. +||+||+|.+++++..+|+.+|||+|.+++.+... ..++.. ..|.
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~----~~~~--- 136 (392)
T TIGR01426 70 IEKLLDEAEDVLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEM----VSPA--- 136 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccc----cccc---
Confidence 4333333333333 333344 89999999988899999999999999986532111 000000 0000
Q ss_pred CccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHh--------hcCCCCcEEEEcchhhcchHHHHHHHhh
Q 011832 167 DEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNAT--------QQSPRAHALILNTFEDLEEPILSHIRTK 238 (476)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~s~~~l~~~~l~~~~~~ 238 (476)
...+. . .....+ +.. ....+...+...+.. ......+..+..+.+.|+++ .+.
T Consensus 137 ~~~~~---~-~~~~~~----~~~------~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~ 197 (392)
T TIGR01426 137 GEGSA---E-EGAIAE----RGL------AEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GET 197 (392)
T ss_pred chhhh---h-hhcccc----chh------HHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccc
Confidence 00000 0 000000 000 000000111111000 01123344677777777776 455
Q ss_pred CC-CeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhc
Q 011832 239 CP-KVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDS 317 (476)
Q Consensus 239 ~p-~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~ 317 (476)
+| +++++|++...... ...|....+++++||||+||........+..+++++...
T Consensus 198 ~~~~~~~~Gp~~~~~~~------------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~ 253 (392)
T TIGR01426 198 FDDSFTFVGPCIGDRKE------------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDL 253 (392)
T ss_pred cCCCeEEECCCCCCccc------------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcC
Confidence 54 89999998753221 123555555778999999998766667888899999999
Q ss_pred CCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccch
Q 011832 318 KQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQ 397 (476)
Q Consensus 318 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~ 397 (476)
+.+++|..+..... ..+ ..+++|+.+.+|+||.++|+++++ +|||||.||+.||+++|+|+|++|...||+
T Consensus 254 ~~~~i~~~g~~~~~------~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~ 324 (392)
T TIGR01426 254 DWHVVLSVGRGVDP------ADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQP 324 (392)
T ss_pred CCeEEEEECCCCCh------hHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHH
Confidence 99999887644111 122 236889999999999999999988 999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011832 398 INSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDI 469 (476)
Q Consensus 398 ~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 469 (476)
.||+++ +++|+|..+.. .++.++|.++|.++|++ ++|+++++++++.+++. +| ...+.++|+.+
T Consensus 325 ~~a~~l-~~~g~g~~l~~~~~~~~~l~~ai~~~l~~--~~~~~~~~~l~~~~~~~---~~--~~~aa~~i~~~ 389 (392)
T TIGR01426 325 MTARRI-AELGLGRHLPPEEVTAEKLREAVLAVLSD--PRYAERLRKMRAEIREA---GG--ARRAADEIEGF 389 (392)
T ss_pred HHHHHH-HHCCCEEEeccccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHc---CC--HHHHHHHHHHh
Confidence 999999 78899999885 88999999999999998 79999999999998872 33 34555555544
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.4e-43 Score=364.13 Aligned_cols=406 Identities=31% Similarity=0.430 Sum_probs=260.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhccccccccc--CCCCeeEEecCCCCCCCCCCCCC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFL--QYSEFQFKTISDGLPADHPRAGD 84 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~~~~~~~~ 84 (476)
+.+++++++|++||++|+.++|+.|+++||+||++++..+....... ....... ......+....+.++........
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 56788889999999999999999999999999999997654433221 1000000 00011111111122221000000
Q ss_pred cHHHHHHHHHhhchHHHHHHH----hcCCCCceEEEECCCcchHHHHHHHcC-CCeEEEecCchHHHHHHHhhhHHHhhC
Q 011832 85 QLMEMFDSLSLNTRPLLKQML----IDTSPPVSCIIGDACMEFVVDVATELE-IPVIHFRAISACSFWAYFSIPEMIQAG 159 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~ll----~~~~~~~DlvI~D~~~~~~~~vA~~l~-iP~i~~~~~~~~~~~~~~~~~~~~~~~ 159 (476)
........+...|...+.+.+ .....++|++|+|.+..+...++.... ++...+.+..+..... +.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----g~~~~~~ 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL----GLPSPLS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc----CCcCccc
Confidence 111113333444444444422 222124999999998667777777765 8888887766554432 2222233
Q ss_pred CCCCCcCCcccc-ccccccCCCCcccccCCCCCccccCCC---CchHHHHH--------HHHhhcCCCCcEEEEcchhhc
Q 011832 160 ELPMKAYDEDMD-RLITKVPGMETFLRFRDLPSFCRVSDV---TDRDLQVL--------KNATQQSPRAHALILNTFEDL 227 (476)
Q Consensus 160 ~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~l~~s~~~l 227 (476)
+.|.. .+... +.+.+..+..+ +....+......... ........ ....+...+.+..++|+.+.+
T Consensus 160 ~~p~~--~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 160 YVPSP--FSLSSGDDMSFPERVPN-LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred ccCcc--cCccccccCcHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 55544 22111 23444444443 111111111100000 00000000 011134566778999998887
Q ss_pred chHHHHHHHhhCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCC--eEEEEEecccc---cc
Q 011832 228 EEPILSHIRTKCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVR--SVLYVSFGSIT---LL 302 (476)
Q Consensus 228 ~~~~l~~~~~~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~I~vs~Gs~~---~~ 302 (476)
+.+. ++..+++++|||++...... ......+|++..+.. ++|||||||.+ .+
T Consensus 237 ~~~~----~~~~~~v~~IG~l~~~~~~~-------------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 237 DFEP----RPLLPKVIPIGPLHVKDSKQ-------------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred CCCC----CCCCCCceEECcEEecCccc-------------------cccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 7731 66678999999999873321 011245666655443 89999999998 79
Q ss_pred CHHHHHHHHHHHHhc-CCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeeccChHHH-hhcccccccccccCchhHHH
Q 011832 303 KREQLIEFWHGLVDS-KQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSWVPQEEV-LAHQAVAGFLTHSGWNSTLE 379 (476)
Q Consensus 303 ~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~~pq~~l-L~~~~~~~~I~HGG~~s~~e 379 (476)
+.++...++.+++.+ +.+|||+++..... .+ +++.++-++||...+|+||.++ |+|+++++||||||+||++|
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~----~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E 369 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSI----YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLE 369 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcch----hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHH
Confidence 999999999999999 77899999865221 01 2222212468999999999998 59999999999999999999
Q ss_pred HHhhCCceeccCCcccchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011832 380 SIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFMRAADRMATMART 450 (476)
Q Consensus 380 al~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~ 450 (476)
++++|||+|++|+++||+.||++++++ |.|..+.+ +++.+.+.+++.+++++ ++|+++++++++.+++
T Consensus 370 ~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~--~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 370 SIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN--EEYKEAAKRLSEILRD 438 (496)
T ss_pred HHhcCCceecCCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC--hHHHHHHHHHHHHHHc
Confidence 999999999999999999999999554 66666654 67666699999999997 7999999999999875
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=8e-43 Score=348.98 Aligned_cols=380 Identities=16% Similarity=0.130 Sum_probs=246.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCC--CC-----
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPAD--HP----- 80 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--~~----- 80 (476)
|||+|+++|+.||++|+++||++|++|||+|+|++++.....++..+ ++|..+++..+.. ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G-----------~~~~~~~~~~~~~~~~~~~~~~ 69 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAG-----------LEFVPVGGDPDELLASPERNAG 69 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcC-----------CceeeCCCCHHHHHhhhhhccc
Confidence 79999999999999999999999999999999999976666555444 5555554322110 00
Q ss_pred ---CCCCcHHHHHHHHHhhchHHHHHHHhc-CCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHH
Q 011832 81 ---RAGDQLMEMFDSLSLNTRPLLKQMLID-TSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMI 156 (476)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~ 156 (476)
............+...+...+.++++. ...+||+||+|.+.+++..+|+++|||++.+++++.....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--------- 140 (401)
T cd03784 70 LLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS--------- 140 (401)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc---------
Confidence 001122223333334444455554442 1248999999998889999999999999999886532110
Q ss_pred hhCCCCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhc------CCCCcEEEEcchhhcchH
Q 011832 157 QAGELPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQ------SPRAHALILNTFEDLEEP 230 (476)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~s~~~l~~~ 230 (476)
..+.. . .+... ..+..+........... ..+...+.... ....+..+....+.+.++
T Consensus 141 ---~~~~~--~----------~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 203 (401)
T cd03784 141 ---AFPPP--L----------GRANL-RLYALLEAELWQDLLGA-WLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP 203 (401)
T ss_pred ---cCCCc--c----------chHHH-HHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC
Confidence 00000 0 00000 00000000000000000 00000010000 011223344444444333
Q ss_pred HHHHHHhhCC-CeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccc-cCHHHHH
Q 011832 231 ILSHIRTKCP-KVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITL-LKREQLI 308 (476)
Q Consensus 231 ~l~~~~~~~p-~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~-~~~~~~~ 308 (476)
++.++ +..++|+........ +..+.++..|++. .+++|||++||... .......
T Consensus 204 -----~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~ 259 (401)
T cd03784 204 -----PPDWPRFDLVTGYGFRDVPYN-----------------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALAR 259 (401)
T ss_pred -----CCCccccCcEeCCCCCCCCCC-----------------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHH
Confidence 44554 566776333221110 1134567788865 46799999999975 4456778
Q ss_pred HHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCcee
Q 011832 309 EFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMI 388 (476)
Q Consensus 309 ~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l 388 (476)
.+++++...+.++||+++..... . ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|
T Consensus 260 ~~~~a~~~~~~~~i~~~g~~~~~------~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v 328 (401)
T cd03784 260 LDVEAVATLGQRAILSLGWGGLG------A---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQL 328 (401)
T ss_pred HHHHHHHHcCCeEEEEccCcccc------c---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEE
Confidence 89999999999999998755221 0 236899999999999999999888 999999999999999999999
Q ss_pred ccCCcccchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011832 389 CWPYFADQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLID 467 (476)
Q Consensus 389 ~iP~~~DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~ 467 (476)
++|+..||+.||+++ +++|+|+.++. .++.++|.++|+++|++ .++++++++++.+++ .+| ...+.++|+
T Consensus 329 ~~P~~~dQ~~~a~~~-~~~G~g~~l~~~~~~~~~l~~al~~~l~~---~~~~~~~~~~~~~~~---~~g--~~~~~~~ie 399 (401)
T cd03784 329 VVPFFGDQPFWAARV-AELGAGPALDPRELTAERLAAALRRLLDP---PSRRRAAALLRRIRE---EDG--VPSAADVIE 399 (401)
T ss_pred eeCCCCCcHHHHHHH-HHCCCCCCCCcccCCHHHHHHHHHHHhCH---HHHHHHHHHHHHHHh---ccC--HHHHHHHHh
Confidence 999999999999999 78899999985 78999999999999996 466667777776654 233 455555554
Q ss_pred H
Q 011832 468 D 468 (476)
Q Consensus 468 ~ 468 (476)
.
T Consensus 400 ~ 400 (401)
T cd03784 400 R 400 (401)
T ss_pred h
Confidence 3
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-41 Score=330.14 Aligned_cols=391 Identities=18% Similarity=0.184 Sum_probs=247.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCC-CCC----CCCC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDG-LPA----DHPR 81 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~----~~~~ 81 (476)
+|||+++..|++||++|+++||++|.++||+|++++++.+.+.+++++ +.|..++.. .+. +...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag-----------~~f~~~~~~~~~~~~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG-----------LAFVAYPIRDSELATEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC-----------cceeeccccCChhhhhhhhhh
Confidence 589999999999999999999999999999999999998888888887 233333221 111 0111
Q ss_pred CCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCC
Q 011832 82 AGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGEL 161 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (476)
......... .........+.+++.+. .+|+++.|.....+ .+++..++|++.......+....... ...
T Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 138 (406)
T COG1819 70 GVKSFRRLL-QQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL-------PLP 138 (406)
T ss_pred ccchhHHHh-hhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-------Ccc
Confidence 111111111 11122233444556666 78999999777655 88999999999875543322111100 000
Q ss_pred CCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHH----Hh
Q 011832 162 PMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHI----RT 237 (476)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~----~~ 237 (476)
+.. ..+.+. ....+..............+. .................-..+..+.+.++..+.+.. +.
T Consensus 139 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (406)
T COG1819 139 PVG-IAGKLP--IPLYPLPPRLVRPLIFARSWL-----PKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR 210 (406)
T ss_pred ccc-cccccc--ccccccChhhccccccchhhh-----hhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC
Confidence 000 000000 000000000000000000000 000000000000000000111122222222111000 11
Q ss_pred hCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhc
Q 011832 238 KCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDS 317 (476)
Q Consensus 238 ~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~ 317 (476)
.+....++|++..... .+...|.. .++++||+|+||.... .++++.+++++..+
T Consensus 211 ~p~~~~~~~~~~~~~~-----------------------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l 264 (406)
T COG1819 211 LPFIGPYIGPLLGEAA-----------------------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADL 264 (406)
T ss_pred CCCCcCcccccccccc-----------------------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcC
Confidence 1224566777765433 22233432 3567999999999866 89999999999999
Q ss_pred CCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccch
Q 011832 318 KQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQ 397 (476)
Q Consensus 318 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~ 397 (476)
+.++|....... .. ...+|+|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+
T Consensus 265 ~~~vi~~~~~~~--------~~-~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~ 333 (406)
T COG1819 265 DVRVIVSLGGAR--------DT-LVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQP 333 (406)
T ss_pred CcEEEEeccccc--------cc-cccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchh
Confidence 999999986511 10 1247999999999999999999998 999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 011832 398 INSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKMM 472 (476)
Q Consensus 398 ~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~ 472 (476)
.||.|+ +++|+|..+.. .++.+.|+++|+++|++ +.|+++++++++.++.. +| .+.+.++|++..+.
T Consensus 334 ~nA~rv-e~~G~G~~l~~~~l~~~~l~~av~~vL~~--~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 334 LNAERV-EELGAGIALPFEELTEERLRAAVNEVLAD--DSYRRAAERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred HHHHHH-HHcCCceecCcccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 999999 89999999995 89999999999999998 89999999999998883 44 67778888875443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.92 E-value=8.2e-23 Score=198.89 Aligned_cols=318 Identities=17% Similarity=0.185 Sum_probs=193.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHH
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLME 88 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (476)
||++...|+.||+.|.+++|++|.++||+|.|++.....+. .. +.. ..+.+..++.. .......+.
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~---~l-----~~~-~g~~~~~~~~~----~l~~~~~~~- 68 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK---TI-----IEK-ENIPYYSISSG----KLRRYFDLK- 68 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc---cc-----Ccc-cCCcEEEEecc----CcCCCchHH-
Confidence 68888888889999999999999999999999997543221 11 111 12555555411 111111121
Q ss_pred HHHHHHhhch--HHHHHHHhcCCCCceEEEECCCcc--hHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCC
Q 011832 89 MFDSLSLNTR--PLLKQMLIDTSPPVSCIIGDACME--FVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMK 164 (476)
Q Consensus 89 ~~~~~~~~~~--~~l~~ll~~~~~~~DlvI~D~~~~--~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 164 (476)
.+........ -....++++. +||+||....+. .+..+|..+++|++......
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~---------------------- 124 (352)
T PRK12446 69 NIKDPFLVMKGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM---------------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC----------------------
Confidence 2222222211 2233456676 899999877555 46788999999998864321
Q ss_pred cCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhC--CCe
Q 011832 165 AYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKC--PKV 242 (476)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~--p~~ 242 (476)
.+++.| +... +-++.+++. +++ . .... .++
T Consensus 125 ------------~~g~~n---------------------r~~~------~~a~~v~~~-f~~---~-----~~~~~~~k~ 156 (352)
T PRK12446 125 ------------TPGLAN---------------------KIAL------RFASKIFVT-FEE---A-----AKHLPKEKV 156 (352)
T ss_pred ------------CccHHH---------------------HHHH------HhhCEEEEE-ccc---h-----hhhCCCCCe
Confidence 122222 0000 112222221 111 1 1122 257
Q ss_pred eeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCH-HHHHHHHHHHHhcCCce
Q 011832 243 YTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKR-EQLIEFWHGLVDSKQRF 321 (476)
Q Consensus 243 ~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~ 321 (476)
+++|......-.. . ..+...+.+.-.+++++|+|..||...... +.+..++..+. .+.++
T Consensus 157 ~~tG~Pvr~~~~~---------~---------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~v 217 (352)
T PRK12446 157 IYTGSPVREEVLK---------G---------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQI 217 (352)
T ss_pred EEECCcCCccccc---------c---------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEE
Confidence 7888665332110 0 011112223323456799999999863222 22333343332 24788
Q ss_pred EEEECCCCCCCchhhHHHHHHhhcCCceEeecc-C-hHHHhhcccccccccccCchhHHHHHhhCCceeccCCc-----c
Q 011832 322 LWVIRPDSVIGEGDALAELVEGTKERGLLVSWV-P-QEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYF-----A 394 (476)
Q Consensus 322 i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~-p-q~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~-----~ 394 (476)
+|+++.+. ++...... .++.+..|+ + ..++|..+|+ +|||||.+|+.|++++|+|+|++|+. .
T Consensus 218 v~~~G~~~-------~~~~~~~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~ 287 (352)
T PRK12446 218 VHLCGKGN-------LDDSLQNK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRG 287 (352)
T ss_pred EEEeCCch-------HHHHHhhc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCc
Confidence 89887551 21111112 355666887 4 4579999998 99999999999999999999999984 4
Q ss_pred cchhhHHHHHhhhcceeecc-cccCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011832 395 DQQINSRFVSEVWNLGLDMK-DVCDRNVVEKMVNDLMVERKEEFMRAADR 443 (476)
Q Consensus 395 DQ~~na~~v~~~~G~G~~~~-~~~~~~~l~~~i~~~l~~~~~~y~~~a~~ 443 (476)
||..||+.+ ++.|+|..+. .+++++.|.+++.++++| .+.|++++++
T Consensus 288 ~Q~~Na~~l-~~~g~~~~l~~~~~~~~~l~~~l~~ll~~-~~~~~~~~~~ 335 (352)
T PRK12446 288 DQILNAESF-ERQGYASVLYEEDVTVNSLIKHVEELSHN-NEKYKTALKK 335 (352)
T ss_pred hHHHHHHHH-HHCCCEEEcchhcCCHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 899999999 6789999987 489999999999999985 1356555544
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=2.1e-23 Score=202.09 Aligned_cols=302 Identities=18% Similarity=0.185 Sum_probs=186.4
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcH
Q 011832 8 PHILIFPLP-CQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQL 86 (476)
Q Consensus 8 ~~il~~~~~-~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (476)
|||+|...+ +.||+...++||++| |||+|+|++.....+.+.+. +....+++-... ......+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~~~ 65 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR------------FPVREIPGLGPI-QENGRLDR 65 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc------------cCEEEccCceEe-ccCCccch
Confidence 899999977 679999999999999 69999999986443322111 222223221111 11111111
Q ss_pred HHHHHHHH------hhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCC
Q 011832 87 MEMFDSLS------LNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGE 160 (476)
Q Consensus 87 ~~~~~~~~------~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~ 160 (476)
........ ......+.+++++. +||+||+| +.+.+..+|+..|||++.+........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~-------------- 128 (318)
T PF13528_consen 66 WKTVRNNIRWLARLARRIRREIRWLREF--RPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH-------------- 128 (318)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc--------------
Confidence 11111111 11123334555565 89999999 444577899999999999866432100
Q ss_pred CCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHh-h-cCCCCcEEEEcchhhcchHHHHHHHhh
Q 011832 161 LPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNAT-Q-QSPRAHALILNTFEDLEEPILSHIRTK 238 (476)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~s~~~l~~~~l~~~~~~ 238 (476)
+.. +.+. .........+.. . ....++..+.-++. .+ .+.
T Consensus 129 -~~~-----------~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-----~~~ 169 (318)
T PF13528_consen 129 -PNF-----------WLPW-------------------DQDFGRLIERYIDRYHFPPADRRLALSFY---PP-----LPP 169 (318)
T ss_pred -ccC-----------Ccch-------------------hhhHHHHHHHhhhhccCCcccceecCCcc---cc-----ccc
Confidence 000 0000 000001111111 1 12334444444433 11 111
Q ss_pred CCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcC
Q 011832 239 CPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSK 318 (476)
Q Consensus 239 ~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~ 318 (476)
..++.++|++....... .- ..+++.|+|++|..... .++++++..+
T Consensus 170 ~~~~~~~~p~~~~~~~~--------------------------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~ 215 (318)
T PF13528_consen 170 FFRVPFVGPIIRPEIRE--------------------------LP--PEDEPKILVYFGGGGPG------DLIEALKALP 215 (318)
T ss_pred cccccccCchhcccccc--------------------------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCC
Confidence 22466788777432210 00 12345799999977532 5677777777
Q ss_pred -CceEEEECCCCCCCchhhHHHHHHhhcCCceEeecc--ChHHHhhcccccccccccCchhHHHHHhhCCceeccCC--c
Q 011832 319 -QRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWV--PQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPY--F 393 (476)
Q Consensus 319 -~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~--pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~--~ 393 (476)
..+++. +... . +..++|+.+..|. ...++|..+++ +|+|||.||++|++++|+|+|++|. +
T Consensus 216 ~~~~~v~-g~~~-~----------~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~ 281 (318)
T PF13528_consen 216 DYQFIVF-GPNA-A----------DPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQ 281 (318)
T ss_pred CCeEEEE-cCCc-c----------cccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 455555 4331 1 1237899999876 45679988888 9999999999999999999999999 7
Q ss_pred ccchhhHHHHHhhhcceeecc-cccCHHHHHHHHHHH
Q 011832 394 ADQQINSRFVSEVWNLGLDMK-DVCDRNVVEKMVNDL 429 (476)
Q Consensus 394 ~DQ~~na~~v~~~~G~G~~~~-~~~~~~~l~~~i~~~ 429 (476)
.||..||+++ +++|+|..++ .+++++.|+++|+++
T Consensus 282 ~EQ~~~a~~l-~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 282 DEQEYNARKL-EELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred chHHHHHHHH-HHCCCeEEcccccCCHHHHHHHHhcC
Confidence 8999999999 8999999998 489999999999764
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=5.6e-21 Score=184.80 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=91.3
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhcCC-ceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccC--hHHHhhcccc
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDSKQ-RFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVP--QEEVLAHQAV 365 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~p--q~~lL~~~~~ 365 (476)
++.|+|.+|+.. ...+++++++.+. .++ +...... . +.+++|+.+.+|.| ..++|+.+++
T Consensus 188 ~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i--~~~~~~~------~---~~~~~~v~~~~~~~~~~~~~l~~ad~ 250 (321)
T TIGR00661 188 EDYILVYIGFEY------RYKILELLGKIANVKFV--CYSYEVA------K---NSYNENVEIRRITTDNFKELIKNAEL 250 (321)
T ss_pred CCcEEEECCcCC------HHHHHHHHHhCCCeEEE--EeCCCCC------c---cccCCCEEEEECChHHHHHHHHhCCE
Confidence 456777777653 1345677777664 333 2222110 0 23578999999997 4578888887
Q ss_pred cccccccCchhHHHHHhhCCceeccCCcc--cchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHH
Q 011832 366 AGFLTHSGWNSTLESIVAGVPMICWPYFA--DQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFM 438 (476)
Q Consensus 366 ~~~I~HGG~~s~~eal~~GvP~l~iP~~~--DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~ 438 (476)
+|||||.+|+.|++++|+|++++|..+ ||..||+.+ +++|+|+.++. ++ ++.+++.+++++ +.|+
T Consensus 251 --vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~~~~~---~~~~~~~~~~~~--~~~~ 318 (321)
T TIGR00661 251 --VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALEYKEL---RLLEAILDIRNM--KRYK 318 (321)
T ss_pred --EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcChhhH---HHHHHHHhcccc--cccc
Confidence 999999999999999999999999955 899999999 77899999974 44 566666666665 4553
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=5e-20 Score=177.23 Aligned_cols=321 Identities=19% Similarity=0.207 Sum_probs=192.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCC--CCCCCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGL-KVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPAD--HPRAGD 84 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--~~~~~~ 84 (476)
|+|++...++.||+.|.++|+++|.++|+ +|.++.+....+... .....+.++.++-..... ......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l---------~~~~~~~~~~I~~~~~~~~~~~~~~~ 71 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFL---------VKQYGIEFELIPSGGLRRKGSLKLLK 71 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeee---------ccccCceEEEEecccccccCcHHHHH
Confidence 57888889999999999999999999999 587776644333211 111135666654222111 111111
Q ss_pred cHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc--hHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCC
Q 011832 85 QLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME--FVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELP 162 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~--~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (476)
+.+..+.. .....+++++. +||+||.-..+. .+..+|..+|||++..-..
T Consensus 72 ~~~~~~~~-----~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn--------------------- 123 (357)
T COG0707 72 APFKLLKG-----VLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN--------------------- 123 (357)
T ss_pred HHHHHHHH-----HHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEecC---------------------
Confidence 11111111 33456778887 999999866665 6677889999999997431
Q ss_pred CCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhCC--
Q 011832 163 MKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCP-- 240 (476)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~p-- 240 (476)
..+++.| .... ..++.+.. +++.. ....+
T Consensus 124 -------------~~~G~an-k~~~--------------------------~~a~~V~~-~f~~~--------~~~~~~~ 154 (357)
T COG0707 124 -------------AVPGLAN-KILS--------------------------KFAKKVAS-AFPKL--------EAGVKPE 154 (357)
T ss_pred -------------CCcchhH-HHhH--------------------------Hhhceeee-ccccc--------cccCCCC
Confidence 1233322 0000 01111111 11110 01111
Q ss_pred CeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccC-HHHHHHHHHHHHhcCC
Q 011832 241 KVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLK-REQLIEFWHGLVDSKQ 319 (476)
Q Consensus 241 ~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~-~~~~~~~~~a~~~~~~ 319 (476)
+++.+|--....-.. . +.. -..+-. ..++++|+|.-||..... .+.+..++..+.+ +.
T Consensus 155 ~~~~tG~Pvr~~~~~---------~---------~~~-~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~ 213 (357)
T COG0707 155 NVVVTGIPVRPEFEE---------L---------PAA-EVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RI 213 (357)
T ss_pred ceEEecCcccHHhhc---------c---------chh-hhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-Ce
Confidence 466666333211100 0 000 111111 125679999999985211 1222223323332 35
Q ss_pred ceEEEECCCCCCCchhhHHHHHHhhcC-C-ceEeeccChH-HHhhcccccccccccCchhHHHHHhhCCceeccCC-cc-
Q 011832 320 RFLWVIRPDSVIGEGDALAELVEGTKE-R-GLLVSWVPQE-EVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPY-FA- 394 (476)
Q Consensus 320 ~~i~~~~~~~~~~~~~~l~~~~~~~~~-n-v~~~~~~pq~-~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~-~~- 394 (476)
.+++..+.+. +++......+ + +.+..|..++ ++|..+|+ +||++|.+|+.|.+++|+|++.+|. .+
T Consensus 214 ~v~~~~G~~~-------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~ 284 (357)
T COG0707 214 QVIHQTGKND-------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGA 284 (357)
T ss_pred EEEEEcCcch-------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCc
Confidence 7777776552 2222222222 2 7788888875 69989998 9999999999999999999999998 33
Q ss_pred --cchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011832 395 --DQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFMRAADRMATMART 450 (476)
Q Consensus 395 --DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~ 450 (476)
||..||+.+ ++.|.|..++. ++|.+.+.+.|.+++++ .++..+|++..++
T Consensus 285 ~~~Q~~NA~~l-~~~gaa~~i~~~~lt~~~l~~~i~~l~~~-----~~~l~~m~~~a~~ 337 (357)
T COG0707 285 DGHQEYNAKFL-EKAGAALVIRQSELTPEKLAELILRLLSN-----PEKLKAMAENAKK 337 (357)
T ss_pred cchHHHHHHHH-HhCCCEEEeccccCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHh
Confidence 899999999 78899999985 89999999999999984 2344445555444
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.82 E-value=1.8e-17 Score=163.28 Aligned_cols=342 Identities=17% Similarity=0.120 Sum_probs=194.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCC-CCCCCCCCCCCcH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISD-GLPADHPRAGDQL 86 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~ 86 (476)
|||+|+..+..||...++.|++.|.++||+|++++.+..... .. ... ..+.++.++. +... .....-.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~---~~-----~~~-~g~~~~~~~~~~~~~--~~~~~~l 70 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA---RL-----VPK-AGIEFHFIPSGGLRR--KGSLANL 70 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh---hc-----ccc-CCCcEEEEeccCcCC--CChHHHH
Confidence 799999988899999999999999999999999998542111 00 000 1244444431 1111 0000001
Q ss_pred HHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc--hHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCC
Q 011832 87 MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME--FVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMK 164 (476)
Q Consensus 87 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~--~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 164 (476)
...... ......+.+++++. +||+|++..... .+..++...++|++......
T Consensus 71 ~~~~~~--~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------------- 124 (357)
T PRK00726 71 KAPFKL--LKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA---------------------- 124 (357)
T ss_pred HHHHHH--HHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC----------------------
Confidence 111111 11123456677776 899999986432 44556777889998642100
Q ss_pred cCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhCCCeee
Q 011832 165 AYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCPKVYT 244 (476)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~p~~~~ 244 (476)
.+.. ..++.. ..+|.++..+...+ . +....++.+
T Consensus 125 ------------~~~~---------------------~~r~~~------~~~d~ii~~~~~~~--~-----~~~~~~i~v 158 (357)
T PRK00726 125 ------------VPGL---------------------ANKLLA------RFAKKVATAFPGAF--P-----EFFKPKAVV 158 (357)
T ss_pred ------------CccH---------------------HHHHHH------HHhchheECchhhh--h-----ccCCCCEEE
Confidence 0000 000000 12333333332111 0 111136777
Q ss_pred eCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcCC--ceE
Q 011832 245 IGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQ--RFL 322 (476)
Q Consensus 245 vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i 322 (476)
+|......... ... ....+...++..+|++..|+... ......+.+++.++.. .++
T Consensus 159 i~n~v~~~~~~-------------------~~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~ 216 (357)
T PRK00726 159 TGNPVREEILA-------------------LAA-PPARLAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVI 216 (357)
T ss_pred ECCCCChHhhc-------------------ccc-hhhhccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEE
Confidence 77554322110 000 00111212244566665555421 1222334466665543 445
Q ss_pred EEECCCCCCCchhhHHHHHHhhcCCceEeeccC-hHHHhhcccccccccccCchhHHHHHhhCCceeccCC----cccch
Q 011832 323 WVIRPDSVIGEGDALAELVEGTKERGLLVSWVP-QEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPY----FADQQ 397 (476)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~p-q~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~----~~DQ~ 397 (476)
|.++.+. .+.+....+ ..-++.+.+|+. ..++|+.+++ +|+|+|.+++.||+++|+|+|++|. .+||.
T Consensus 217 ~~~G~g~----~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~ 289 (357)
T PRK00726 217 HQTGKGD----LEEVRAAYA-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQT 289 (357)
T ss_pred EEcCCCc----HHHHHHHhh-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence 5655442 122211112 333477889984 5689999998 9999999999999999999999997 46899
Q ss_pred hhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 398 INSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 398 ~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
.|+..+ .+.|.|..+.. .++.+.|+++|.+++++ ++++++..+-+.. ..+..+..+.++.+++.
T Consensus 290 ~~~~~i-~~~~~g~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 354 (357)
T PRK00726 290 ANARAL-VDAGAALLIPQSDLTPEKLAEKLLELLSD--PERLEAMAEAARA----LGKPDAAERLADLIEEL 354 (357)
T ss_pred HHHHHH-HHCCCEEEEEcccCCHHHHHHHHHHHHcC--HHHHHHHHHHHHh----cCCcCHHHHHHHHHHHH
Confidence 999999 67799999974 67899999999999997 6666554444333 22344444444444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=8.3e-16 Score=150.97 Aligned_cols=311 Identities=19% Similarity=0.159 Sum_probs=180.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCC-CCCCCCCCCCcHH
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDG-LPADHPRAGDQLM 87 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~ 87 (476)
||++...+..||......|++.|.++||+|++++...... .. . .....+++..++-. ... ......+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~-------~-~~~~~~~~~~~~~~~~~~--~~~~~~~~ 69 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-AR-------L-VPKAGIPLHTIPVGGLRR--KGSLKKLK 69 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hh-------c-ccccCCceEEEEecCcCC--CChHHHHH
Confidence 5888998889999999999999999999999998743211 00 0 00112444444311 111 00001111
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc--hHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCCc
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME--FVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKA 165 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~--~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 165 (476)
..+... .....+.+++++. +||+|++..... ++..+|...++|++......
T Consensus 70 ~~~~~~--~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~----------------------- 122 (350)
T cd03785 70 APFKLL--KGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA----------------------- 122 (350)
T ss_pred HHHHHH--HHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------------
Confidence 111111 1123456667776 899999865332 45677888899998631100
Q ss_pred CCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhC-CCeee
Q 011832 166 YDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKC-PKVYT 244 (476)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~-p~~~~ 244 (476)
.++. ..+.. ...++.+++.+....+. .. .++.+
T Consensus 123 -----------~~~~---------------------~~~~~------~~~~~~vi~~s~~~~~~--------~~~~~~~~ 156 (350)
T cd03785 123 -----------VPGL---------------------ANRLL------ARFADRVALSFPETAKY--------FPKDKAVV 156 (350)
T ss_pred -----------CccH---------------------HHHHH------HHhhCEEEEcchhhhhc--------CCCCcEEE
Confidence 0000 00000 12356666655433221 11 25667
Q ss_pred eCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhc---CCce
Q 011832 245 IGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDS---KQRF 321 (476)
Q Consensus 245 vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~ 321 (476)
+|......... .... .+.+...+++.+|++..|+.... .....+.+++..+ +..+
T Consensus 157 i~n~v~~~~~~-------------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~--~~~~~l~~a~~~l~~~~~~~ 214 (350)
T cd03785 157 TGNPVREEILA-------------------LDRE-RARLGLRPGKPTLLVFGGSQGAR--AINEAVPEALAELLRKRLQV 214 (350)
T ss_pred ECCCCchHHhh-------------------hhhh-HHhcCCCCCCeEEEEECCcHhHH--HHHHHHHHHHHHhhccCeEE
Confidence 77544321100 0001 11222223445666666655321 2222233444433 3344
Q ss_pred EEEECCCCCCCchhhHHHHHHhhcCCceEeecc-ChHHHhhcccccccccccCchhHHHHHhhCCceeccCC----cccc
Q 011832 322 LWVIRPDSVIGEGDALAELVEGTKERGLLVSWV-PQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPY----FADQ 396 (476)
Q Consensus 322 i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~-pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~----~~DQ 396 (476)
++.++.+ ..+.+........+|+.+.+|+ +..++|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|
T Consensus 215 ~~i~G~g----~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~ 288 (350)
T cd03785 215 IHQTGKG----DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQ 288 (350)
T ss_pred EEEcCCc----cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcH
Confidence 5565543 1223322222234689999998 55679999998 9999999999999999999999986 3578
Q ss_pred hhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhH
Q 011832 397 QINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 397 ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~ 432 (476)
..|+..+ .+.|.|..++. ..+.++|.++|.+++++
T Consensus 289 ~~~~~~l-~~~g~g~~v~~~~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 289 TANARAL-VKAGAAVLIPQEELTPERLAAALLELLSD 324 (350)
T ss_pred HHhHHHH-HhCCCEEEEecCCCCHHHHHHHHHHHhcC
Confidence 8999999 56799999875 57999999999999985
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.69 E-value=3.8e-14 Score=139.09 Aligned_cols=88 Identities=25% Similarity=0.346 Sum_probs=71.4
Q ss_pred ChHHHhhcccccccccccCchhHHHHHhhCCceeccCCc---ccchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHH
Q 011832 355 PQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYF---ADQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLM 430 (476)
Q Consensus 355 pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~---~DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l 430 (476)
+..++|+.+|+ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+ ++.|.|..++. +.+.+.|.++|.+++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~~~~~~~~~l~~~i~~ll 319 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIRQKELLPEKLLEALLKLL 319 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEecccCCHHHHHHHHHHHH
Confidence 45789999998 99999988999999999999999863 4678899888 67799988874 678999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 011832 431 VERKEEFMRAADRMATMART 450 (476)
Q Consensus 431 ~~~~~~y~~~a~~~~~~~~~ 450 (476)
++ +++++ +|++..++
T Consensus 320 ~~--~~~~~---~~~~~~~~ 334 (348)
T TIGR01133 320 LD--PANLE---AMAEAARK 334 (348)
T ss_pred cC--HHHHH---HHHHHHHh
Confidence 86 55443 34444443
No 35
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.69 E-value=2.3e-14 Score=142.40 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=111.9
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhc-CCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH-HHhhcccc
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDS-KQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE-EVLAHQAV 365 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~-~lL~~~~~ 365 (476)
++++|++..|+... ...+..+++++... +.++++..+.+.. ..+.+..+.+..++|+.+.+|+++. +++..+|+
T Consensus 201 ~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~~--~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~ 276 (380)
T PRK13609 201 NKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNEA--LKQSLEDLQETNPDALKVFGYVENIDELFRVTSC 276 (380)
T ss_pred CCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCHH--HHHHHHHHHhcCCCcEEEEechhhHHHHHHhccE
Confidence 45677777787642 12345567777654 3466666553310 0112233323345689999999874 79999998
Q ss_pred cccccccCchhHHHHHhhCCceecc-CCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 011832 366 AGFLTHSGWNSTLESIVAGVPMICW-PYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAADRM 444 (476)
Q Consensus 366 ~~~I~HGG~~s~~eal~~GvP~l~i-P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~ 444 (476)
+|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+... +.+.|.++|.++++| +..++ ++
T Consensus 277 --~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~~---~~~~l~~~i~~ll~~--~~~~~---~m 345 (380)
T PRK13609 277 --MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVIR---DDEEVFAKTEALLQD--DMKLL---QM 345 (380)
T ss_pred --EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEEC---CHHHHHHHHHHHHCC--HHHHH---HH
Confidence 99999988999999999999985 6777788899988 6679887653 679999999999986 44443 33
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011832 445 ATMARTTANEGGPSYCNLDRLIDDIKM 471 (476)
Q Consensus 445 ~~~~~~~~~~~g~~~~~~~~~i~~~~~ 471 (476)
++..++ .....+..+.++.+++.+..
T Consensus 346 ~~~~~~-~~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 346 KEAMKS-LYLPEPADHIVDDILAENHV 371 (380)
T ss_pred HHHHHH-hCCCchHHHHHHHHHHhhhh
Confidence 334333 22334555556665555443
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.68 E-value=1.1e-14 Score=143.94 Aligned_cols=351 Identities=13% Similarity=0.023 Sum_probs=195.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
.||+|...++.||++|. +|+++|.++|++|+|++... ..+++.+.. . .+++..++ ..... ..+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg--~~m~~~g~~--~-----~~~~~~l~----v~G~~--~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG--PRMAAEGCE--V-----LYSMEELS----VMGLR--EVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc--HHHHhCcCc--c-----ccChHHhh----hccHH--HHHH
Confidence 47999998999999999 99999999999999999742 244444321 0 12222221 00000 0111
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEE-CCCcchHHH--HHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCC
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIG-DACMEFVVD--VATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMK 164 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~-D~~~~~~~~--vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 164 (476)
.+. .+... ...+.+++++. +||+||. |..++.... .|+.+|||++.+.+--..
T Consensus 70 ~~~-~~~~~-~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~w-------------------- 125 (385)
T TIGR00215 70 RLG-RLLKI-RKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVW-------------------- 125 (385)
T ss_pred HHH-HHHHH-HHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHh--------------------
Confidence 111 11111 23556777777 8999995 543334333 788999999986420000
Q ss_pred cCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhCCCeee
Q 011832 165 AYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCPKVYT 244 (476)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~p~~~~ 244 (476)
.|. +..+ +.+. ..+|.+++.+..+-+. ++...-+..+
T Consensus 126 ----------aw~-~~~~-----------------r~l~----------~~~d~v~~~~~~e~~~-----~~~~g~~~~~ 162 (385)
T TIGR00215 126 ----------AWR-KWRA-----------------KKIE----------KATDFLLAILPFEKAF-----YQKKNVPCRF 162 (385)
T ss_pred ----------hcC-cchH-----------------HHHH----------HHHhHhhccCCCcHHH-----HHhcCCCEEE
Confidence 000 0001 0000 1223333333322111 1222235667
Q ss_pred eCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhc-----CC
Q 011832 245 IGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDS-----KQ 319 (476)
Q Consensus 245 vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~ 319 (476)
||.-..+..... .+ ...+..+.+.-.+++++|.+-.||....-......+++++..+ +.
T Consensus 163 vGnPv~~~~~~~--------~~--------~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~ 226 (385)
T TIGR00215 163 VGHPLLDAIPLY--------KP--------DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDL 226 (385)
T ss_pred ECCchhhhcccc--------CC--------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCe
Confidence 873332211000 00 0111222222223556788877877532133445566555443 22
Q ss_pred ceEEEECCCCCCCchhhHHHHHHhh--cCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceecc----CCc
Q 011832 320 RFLWVIRPDSVIGEGDALAELVEGT--KERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICW----PYF 393 (476)
Q Consensus 320 ~~i~~~~~~~~~~~~~~l~~~~~~~--~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~i----P~~ 393 (476)
++++....... ...++.+.+.. ...+.+..+ ...++|+.+|+ +|+-+|..|+ |++++|+|+|++ |+.
T Consensus 227 ~~vi~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~ 299 (385)
T TIGR00215 227 RRVLPVVNFKR---RLQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLT 299 (385)
T ss_pred EEEEEeCCchh---HHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHH
Confidence 45444332210 11223332222 223333322 34569999998 9999999888 999999999999 763
Q ss_pred c---------cchhhHHHHHhhhcceeecc-cccCHHHHHHHHHHHHhHhHH----HHHHHHHHHHHHHHHHHhcCCChH
Q 011832 394 A---------DQQINSRFVSEVWNLGLDMK-DVCDRNVVEKMVNDLMVERKE----EFMRAADRMATMARTTANEGGPSY 459 (476)
Q Consensus 394 ~---------DQ~~na~~v~~~~G~G~~~~-~~~~~~~l~~~i~~~l~~~~~----~y~~~a~~~~~~~~~~~~~~g~~~ 459 (476)
. +|..|+..+ ...++...+. .++|++.|.+++.++|+| + +++++.++--..+++.+.++|.+.
T Consensus 300 ~~~~~~~~~~~~~~~~nil-~~~~~~pel~q~~~~~~~l~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (385)
T TIGR00215 300 FLIARRLVKTDYISLPNIL-ANRLLVPELLQEECTPHPLAIALLLLLEN--GLKAYKEMHRERQFFEELRQRIYCNADSE 376 (385)
T ss_pred HHHHHHHHcCCeeeccHHh-cCCccchhhcCCCCCHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 2 378899999 5558887776 589999999999999987 6 566655555555555566677777
Q ss_pred HHHHHHHH
Q 011832 460 CNLDRLID 467 (476)
Q Consensus 460 ~~~~~~i~ 467 (476)
+..+..++
T Consensus 377 ~~a~~i~~ 384 (385)
T TIGR00215 377 RAAQAVLE 384 (385)
T ss_pred HHHHHHhh
Confidence 66665543
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.63 E-value=2.4e-14 Score=131.40 Aligned_cols=342 Identities=14% Similarity=0.135 Sum_probs=198.3
Q ss_pred CCCCCEEEEEcC--CCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCC--CC
Q 011832 4 KPKSPHILIFPL--PCQSHMNSMLKLAEIFGLA--GLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGL--PA 77 (476)
Q Consensus 4 ~~~~~~il~~~~--~~~gH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~--~~ 77 (476)
+++.+||+|++. .+-||+..++.+|+.|++. |.+|++++.......+.- ...+++..+|.-. ..
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~----------~~gVd~V~LPsl~k~~~ 75 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG----------PAGVDFVKLPSLIKGDN 75 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC----------cccCceEecCceEecCC
Confidence 445669999994 4669999999999999998 999999999765433322 1347888887422 22
Q ss_pred CCCCCCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHh
Q 011832 78 DHPRAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQ 157 (476)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~ 157 (476)
+... ..+...-...+.+.....+..-.+.- +||++|+|.+-+... .++ .|.+. +
T Consensus 76 G~~~-~~d~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~Glr---~EL-~ptL~-----------y-------- 129 (400)
T COG4671 76 GEYG-LVDLDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPFGLR---FEL-LPTLE-----------Y-------- 129 (400)
T ss_pred Ccee-eeecCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEeccccchh---hhh-hHHHH-----------H--------
Confidence 2111 11111113333343344445555555 899999997665411 010 01000 0
Q ss_pred hCCCCCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHH--HHHH
Q 011832 158 AGELPMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPI--LSHI 235 (476)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~--l~~~ 235 (476)
+... ++.. +-++. ..++.+.............+... ...|.+++...|.|.-+. ++..
T Consensus 130 ---l~~~--~t~~------vL~lr---~i~D~p~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~~~~~~~~ 189 (400)
T COG4671 130 ---LKTT--GTRL------VLGLR---SIRDIPQELEADWRRAETVRLIN------RFYDLVLVYGDPDFYDPLTEFPFA 189 (400)
T ss_pred ---Hhhc--CCcc------eeehH---hhhhchhhhccchhhhHHHHHHH------HhheEEEEecCccccChhhcCCcc
Confidence 0000 0000 00000 01111111111111111111111 345677777777654431 1111
Q ss_pred HhhCCCeeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHH
Q 011832 236 RTKCPKVYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLV 315 (476)
Q Consensus 236 ~~~~p~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~ 315 (476)
...-.++.|+|.+..+.+. .+.| +... +.+.-|+||.|.-. ...+++..+++|-.
T Consensus 190 ~~i~~k~~ytG~vq~~~~~--------~~~p---------------~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~ 244 (400)
T COG4671 190 PAIRAKMRYTGFVQRSLPH--------LPLP---------------PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQ 244 (400)
T ss_pred HhhhhheeEeEEeeccCcC--------CCCC---------------CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhh
Confidence 2222479999998322110 0111 1111 34457889888654 45667777777765
Q ss_pred hc-CCceEEEE-CCCCCCCchhhHHHHHHhhc--CCceEeeccChH-HHhhcccccccccccCchhHHHHHhhCCceecc
Q 011832 316 DS-KQRFLWVI-RPDSVIGEGDALAELVEGTK--ERGLLVSWVPQE-EVLAHQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 316 ~~-~~~~i~~~-~~~~~~~~~~~l~~~~~~~~--~nv~~~~~~pq~-~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
.+ +.+-.|.+ .++..+.. +-..+...-+ +++.+..|-.+. .+|..++. +|+-||.||++|-|.+|+|.+++
T Consensus 245 ~l~~l~~~~~ivtGP~MP~~--~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLiv 320 (400)
T COG4671 245 LLAGLNHKWLIVTGPFMPEA--QRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIV 320 (400)
T ss_pred hCCCCCcceEEEeCCCCCHH--HHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEe
Confidence 53 33323443 22323321 1133333344 688899998765 68877777 99999999999999999999999
Q ss_pred CCcc---cchhhHHHHHhhhcceeecc-cccCHHHHHHHHHHHHh
Q 011832 391 PYFA---DQQINSRFVSEVWNLGLDMK-DVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 391 P~~~---DQ~~na~~v~~~~G~G~~~~-~~~~~~~l~~~i~~~l~ 431 (476)
|... +|-.-|.|+ +++|+--.+- .++++..++++|...++
T Consensus 321 Pr~~p~eEQliRA~Rl-~~LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 321 PRAAPREEQLIRAQRL-EELGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred ccCCCcHHHHHHHHHH-HhcCcceeeCcccCChHHHHHHHHhccc
Confidence 9844 899999999 8999887776 48999999999999887
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.61 E-value=1.8e-13 Score=129.13 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=78.3
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhc--CCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH-HHhhccccc
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDS--KQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE-EVLAHQAVA 366 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~-~lL~~~~~~ 366 (476)
+.|+|++|..-. ......+++++... +.++.++++.... ..+.+..+... ..|+.+..++++. ++|..+++
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~--~~~~l~~~~~~-~~~i~~~~~~~~m~~lm~~aDl- 244 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP--NLDELKKFAKE-YPNIILFIDVENMAELMNEADL- 244 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc--CHHHHHHHHHh-CCCEEEEeCHHHHHHHHHHCCE-
Confidence 478999996542 23445577777664 3466777764421 12233333332 4689999999986 79999999
Q ss_pred ccccccCchhHHHHHhhCCceeccCCcccchhhHHH
Q 011832 367 GFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRF 402 (476)
Q Consensus 367 ~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~ 402 (476)
+|++|| +|+.|+++.|+|++++|...+|..||+.
T Consensus 245 -~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 245 -AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred -EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.54 E-value=1.8e-12 Score=128.75 Aligned_cols=348 Identities=15% Similarity=0.082 Sum_probs=172.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcH
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQL 86 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (476)
.|||+|+..+..||+.|.. ++++|.++++++.+++... ..+++.... ..+.++.++ - ..+
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~l~----~------~g~ 60 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG--PRMQAAGCE-------SLFDMEELA----V------MGL 60 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc--HHHHhCCCc-------cccCHHHhh----h------ccH
Confidence 4789999999999999999 9999999988888887533 233333210 001212111 1 011
Q ss_pred HHHHHHHHh--hchHHHHHHHhcCCCCceEEEECCC-cchH--HHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCC
Q 011832 87 MEMFDSLSL--NTRPLLKQMLIDTSPPVSCIIGDAC-MEFV--VDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGEL 161 (476)
Q Consensus 87 ~~~~~~~~~--~~~~~l~~ll~~~~~~~DlvI~D~~-~~~~--~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (476)
.+.+..... .....+.+++++. +||+|+.-.+ ..+. ...|...|||++.+......
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~----------------- 121 (380)
T PRK00025 61 VEVLPRLPRLLKIRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW----------------- 121 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh-----------------
Confidence 121111111 1234567777777 8999886333 2333 33467789999875321000
Q ss_pred CCCcCCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhCCC
Q 011832 162 PMKAYDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCPK 241 (476)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~p~ 241 (476)
.|.++..+ + . ...++.+++.+...-+.- +...-+
T Consensus 122 -------------~~~~~~~~---------------------~-~------~~~~d~i~~~~~~~~~~~-----~~~g~~ 155 (380)
T PRK00025 122 -------------AWRQGRAF---------------------K-I------AKATDHVLALFPFEAAFY-----DKLGVP 155 (380)
T ss_pred -------------hcCchHHH---------------------H-H------HHHHhhheeCCccCHHHH-----HhcCCC
Confidence 00000000 0 0 122344444443221111 222123
Q ss_pred eeeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhc----
Q 011832 242 VYTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDS---- 317 (476)
Q Consensus 242 ~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---- 317 (476)
+.++|-...+.... .+ ......+.+.-.+++++|.+..||...........++++++.+
T Consensus 156 ~~~~G~p~~~~~~~---------~~--------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~ 218 (380)
T PRK00025 156 VTFVGHPLADAIPL---------LP--------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRY 218 (380)
T ss_pred eEEECcCHHHhccc---------cc--------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 66676332211100 00 0111222232222345666766765422112234455555432
Q ss_pred -CCceEEEECCCCCCCchhhHHHHHHhh-cCCceEeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcc-
Q 011832 318 -KQRFLWVIRPDSVIGEGDALAELVEGT-KERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFA- 394 (476)
Q Consensus 318 -~~~~i~~~~~~~~~~~~~~l~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~- 394 (476)
+.+++|..+.+. ..+.+..+.+.. .-++.+.. -.-.++++.+|+ +|+-+|.+++ |++++|+|+|++|-..
T Consensus 219 ~~~~~ii~~~~~~---~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~ 291 (380)
T PRK00025 219 PDLRFVLPLVNPK---RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSP 291 (380)
T ss_pred CCeEEEEecCChh---hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCH
Confidence 235666644221 011222221222 12333322 123578999998 9999998887 9999999999985321
Q ss_pred -----c--chhh-----HHHHHhhhcceeecc-cccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011832 395 -----D--QQIN-----SRFVSEVWNLGLDMK-DVCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCN 461 (476)
Q Consensus 395 -----D--Q~~n-----a~~v~~~~G~G~~~~-~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~ 461 (476)
+ |..| +..+ ...|++..+. ...+++.|.+++.++++| ++.+++..+-.+.+++.+ ..+...+.
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~-~~~a~~~~ 367 (380)
T PRK00025 292 LTFWIAKRLVKVPYVSLPNLL-AGRELVPELLQEEATPEKLARALLPLLAD--GARRQALLEGFTELHQQL-RCGADERA 367 (380)
T ss_pred HHHHHHHHHHcCCeeehHHHh-cCCCcchhhcCCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHh-CCCHHHHH
Confidence 2 2222 2333 2223333333 478999999999999997 555544333333333323 23444444
Q ss_pred HHHHHH
Q 011832 462 LDRLID 467 (476)
Q Consensus 462 ~~~~i~ 467 (476)
++.+++
T Consensus 368 ~~~i~~ 373 (380)
T PRK00025 368 AQAVLE 373 (380)
T ss_pred HHHHHH
Confidence 444433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.54 E-value=1.8e-12 Score=128.92 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=113.2
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHh-c-CCceEEEECCCCCCCchhhH-HHHHHh--hcCCceEeeccChH-HHhh
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVD-S-KQRFLWVIRPDSVIGEGDAL-AELVEG--TKERGLLVSWVPQE-EVLA 361 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~-~-~~~~i~~~~~~~~~~~~~~l-~~~~~~--~~~nv~~~~~~pq~-~lL~ 361 (476)
++++|++..|+... ...+..+++++.. . +.+++++.+.+ . .+ +.+.+. ..+++.+.+|+++. +++.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~-----~-~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS-----K-ELKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC-----H-HHHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 45688888887752 2344555555432 2 34565555433 1 12 223222 23578888999764 6999
Q ss_pred cccccccccccCchhHHHHHhhCCceecc-CCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHHH
Q 011832 362 HQAVAGFLTHSGWNSTLESIVAGVPMICW-PYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRA 440 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~~GvP~l~i-P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~ 440 (476)
.+|+ +|+.+|..|+.||+++|+|+|++ |..+.|..|+..+ ++.|+|+... +.+++.++|.+++++ +. .
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~---~~~~l~~~i~~ll~~--~~---~ 341 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD---TPEEAIKIVASLTNG--NE---Q 341 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC---CHHHHHHHHHHHhcC--HH---H
Confidence 9999 99988888999999999999998 7767778899999 7779998765 789999999999986 32 2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcc
Q 011832 441 ADRMATMARTTANEGGPSYCNLDRLIDDIKMMSS 474 (476)
Q Consensus 441 a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~ 474 (476)
.++|++..++ .....+..+.++.+++.+....+
T Consensus 342 ~~~m~~~~~~-~~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 342 LTNMISTMEQ-DKIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHHHHHHHHH-hcCCCCHHHHHHHHHHHhhhhhh
Confidence 3445555544 23345556666666666655443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.50 E-value=1.9e-15 Score=131.77 Aligned_cols=134 Identities=14% Similarity=0.234 Sum_probs=94.5
Q ss_pred EEEEEeccccccC-HHHHHHHHHHHHhc--CCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeeccC-hHHHhhcccc
Q 011832 291 VLYVSFGSITLLK-REQLIEFWHGLVDS--KQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSWVP-QEEVLAHQAV 365 (476)
Q Consensus 291 ~I~vs~Gs~~~~~-~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~~p-q~~lL~~~~~ 365 (476)
+|+|+.||..... .+.+..++..+... ..++++.++..... +. ..+ ...+.|+.+.+|++ ..+++..+|+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~----~~~~~~-~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE----ELKIKV-ENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH----HHCCCH-CCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH----HHHHHH-hccCCcEEEEechhhHHHHHHHcCE
Confidence 4899999875210 11122233333322 46788888755211 11 111 11236889999999 7789999998
Q ss_pred cccccccCchhHHHHHhhCCceeccCCcc----cchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhH
Q 011832 366 AGFLTHSGWNSTLESIVAGVPMICWPYFA----DQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 366 ~~~I~HGG~~s~~eal~~GvP~l~iP~~~----DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~ 432 (476)
+|||||.||+.|++++|+|+|++|... +|..||..+ ++.|+|..+.. ..+.+.|.++|.+++++
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcccCCHHHHHHHHHHHHcC
Confidence 999999999999999999999999988 999999999 67799999985 77899999999999985
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.42 E-value=9.8e-11 Score=116.26 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=81.5
Q ss_pred CCceEeeccCh-HHHhhcccccccccccCchhHHHHHhhCCceeccCCcccch-hhHHHHHhhhcceeecccccCHHHHH
Q 011832 346 ERGLLVSWVPQ-EEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQ-INSRFVSEVWNLGLDMKDVCDRNVVE 423 (476)
Q Consensus 346 ~nv~~~~~~pq-~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~-~na~~v~~~~G~G~~~~~~~~~~~l~ 423 (476)
.++.+.+|+++ .++|..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|..+ -+.+.|.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~---~~~~~la 338 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS---ESPKEIA 338 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec---CCHHHHH
Confidence 46888899986 469999999 999999999999999999999999877776 688888 566999865 4889999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011832 424 KMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLI 466 (476)
Q Consensus 424 ~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i 466 (476)
++|.+++++ . .+..++|++..++. ....+..+.++.++
T Consensus 339 ~~i~~ll~~--~--~~~~~~m~~~~~~~-~~~~a~~~i~~~l~ 376 (382)
T PLN02605 339 RIVAEWFGD--K--SDELEAMSENALKL-ARPEAVFDIVHDLH 376 (382)
T ss_pred HHHHHHHcC--C--HHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence 999999974 1 22334455555542 22333334444443
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.32 E-value=8.3e-09 Score=101.20 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=95.3
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhc----CCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHH---Hhhc
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDS----KQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEE---VLAH 362 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~---lL~~ 362 (476)
..+++..|+... ......+++++..+ +..+++.-.+.. ...+. ...+|+.+.+|+++.+ +++.
T Consensus 197 ~~~i~~~G~~~~--~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~-------~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ 266 (364)
T cd03814 197 RPVLLYVGRLAP--EKNLEALLDADLPLRRRPPVRLVIVGDGPA-------RARLE-ARYPNVHFLGFLDGEELAAAYAS 266 (364)
T ss_pred CeEEEEEecccc--ccCHHHHHHHHHHhhhcCCceEEEEeCCch-------HHHHh-ccCCcEEEEeccCHHHHHHHHHh
Confidence 356677777642 22334445555444 234444433221 12222 3567999999999765 7888
Q ss_pred ccccccccccC----chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHH
Q 011832 363 QAVAGFLTHSG----WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFM 438 (476)
Q Consensus 363 ~~~~~~I~HGG----~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~ 438 (476)
+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+ ++.+.|.... .-+.+++.++|.+++++ +..+
T Consensus 267 ~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~-~~~~~~l~~~i~~l~~~--~~~~ 336 (364)
T cd03814 267 ADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVE-PGDAEAFAAALAALLAD--PELR 336 (364)
T ss_pred CCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcC-CCCHHHHHHHHHHHHcC--HHHH
Confidence 888 776654 468999999999999887553 45556 6557887775 45778899999999986 4443
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 439 RAADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 439 ~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
++..+-+... + +.-+..+..+++++.
T Consensus 337 ~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 362 (364)
T cd03814 337 RRMAARARAE---A-ERRSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHHHHH---H-hhcCHHHHHHHHHHh
Confidence 3333222221 1 234445555555543
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.27 E-value=1.5e-12 Score=109.84 Aligned_cols=122 Identities=21% Similarity=0.198 Sum_probs=77.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCC--CCCC--CCCCCCc
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDG--LPAD--HPRAGDQ 85 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~--~~~~--~~~~~~~ 85 (476)
|+|++.|+.||++|+++||++|.+|||+|++++++...+.+++.+ ++|..++.. ++.. .......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~G-----------l~~~~~~~~~~~~~~~~~~~~~~~ 69 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAG-----------LEFVPIPGDSRLPRSLEPLANLRR 69 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT------------EEEESSSCGGGGHHHHHHHHHHC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccC-----------ceEEEecCCcCcCcccchhhhhhh
Confidence 789999999999999999999999999999999988777775554 778877643 0000 0000001
Q ss_pred HHHHHHHHHhhchHHHHHHHh------cCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCch
Q 011832 86 LMEMFDSLSLNTRPLLKQMLI------DTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISA 143 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~ll~------~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~ 143 (476)
........ ......+.+... ......|+++.+.....+..+|++++||++.....+.
T Consensus 70 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 70 LARLIRGL-EEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred HHHHhhhh-hHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11110011 111122222221 1113578888888888899999999999999877654
No 45
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.23 E-value=5.6e-09 Score=103.53 Aligned_cols=333 Identities=14% Similarity=0.058 Sum_probs=176.3
Q ss_pred CccCHHHHHHHHHHHHh--CCCEEE---EEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHH
Q 011832 17 CQSHMNSMLKLAEIFGL--AGLKVT---FLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFD 91 (476)
Q Consensus 17 ~~gH~~p~l~La~~L~~--rGH~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 91 (476)
+.|-=.-.++||++|.+ .|++|. ++++..-.+ +.. +....-...+|.+.+.. ..+...+.
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~-----------ip~~g~~~~~~sgg~~~-~~~~~~~~ 70 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLG-----------IPIIGPTKELPSGGFSY-QSLRGLLR 70 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCC-----------CceeCCCCCCCCCCccC-CCHHHHHH
Confidence 44455667899999998 699999 998853322 111 11111111334433332 22333333
Q ss_pred HHHh-hchHHHH--HHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCCcCCc
Q 011832 92 SLSL-NTRPLLK--QMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAYDE 168 (476)
Q Consensus 92 ~~~~-~~~~~l~--~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 168 (476)
.... .....++ .+++....+||+||.-.-+. ...+|...|+|++.+.+.=.-. +. .+
T Consensus 71 ~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~--------------~~-----~~ 130 (396)
T TIGR03492 71 DLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY--------------YW-----ES 130 (396)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce--------------ee-----cC
Confidence 3222 2222222 22333324889999776665 7888999999999975521100 00 00
Q ss_pred cccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhCCCeeeeCCC
Q 011832 169 DMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKCPKVYTIGPL 248 (476)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~p~~~~vG~~ 248 (476)
.+.++.. . .++.++-..+ ..+ .+..-..+.++.+++.....-+ +++...-++.++|--
T Consensus 131 -----~~~~~~~-~--~~~~~~G~~~--------~p~-e~n~l~~~~a~~v~~~~~~t~~-----~l~~~g~k~~~vGnP 188 (396)
T TIGR03492 131 -----GPRRSPS-D--EYHRLEGSLY--------LPW-ERWLMRSRRCLAVFVRDRLTAR-----DLRRQGVRASYLGNP 188 (396)
T ss_pred -----CCCCccc-h--hhhccCCCcc--------CHH-HHHHhhchhhCEEeCCCHHHHH-----HHHHCCCeEEEeCcC
Confidence 0000000 0 0000000000 000 0111112456666666643322 224433488999955
Q ss_pred cccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhc----CCceEEE
Q 011832 249 HLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDS----KQRFLWV 324 (476)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~ 324 (476)
..+.-.. ... .-+ .+++++|.+-.||-...-...+..++++++.+ +..+++.
T Consensus 189 v~d~l~~-------------------~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~ 244 (396)
T TIGR03492 189 MMDGLEP-------------------PER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAA 244 (396)
T ss_pred HHhcCcc-------------------ccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEE
Confidence 5432210 010 011 12345788888988422223344566666554 4577777
Q ss_pred ECCCCCCCchhhH-HHHHH-hhc--------------CCceEeeccC-hHHHhhcccccccccccCchhHHHHHhhCCce
Q 011832 325 IRPDSVIGEGDAL-AELVE-GTK--------------ERGLLVSWVP-QEEVLAHQAVAGFLTHSGWNSTLESIVAGVPM 387 (476)
Q Consensus 325 ~~~~~~~~~~~~l-~~~~~-~~~--------------~nv~~~~~~p-q~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~ 387 (476)
+.++.. ...+ ..+.+ ... +++.+..+.. ..+++..+++ +|+-+|..| .|+...|+|+
T Consensus 245 ~~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~ 318 (396)
T TIGR03492 245 IVPSLS---LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPV 318 (396)
T ss_pred eCCCCC---HHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCE
Confidence 743311 1122 11111 111 1244545543 4579999998 999999666 9999999999
Q ss_pred eccCCcccchhhHHHHHhhh----cceeecccccCHHHHHHHHHHHHhHhHHHHHHHH
Q 011832 388 ICWPYFADQQINSRFVSEVW----NLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAA 441 (476)
Q Consensus 388 l~iP~~~DQ~~na~~v~~~~----G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a 441 (476)
|++|.-..|. |+... ++. |.+..+. ..+.+.|.+++.++++| +...++.
T Consensus 319 Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~-~~~~~~l~~~l~~ll~d--~~~~~~~ 371 (396)
T TIGR03492 319 IQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA-SKNPEQAAQVVRQLLAD--PELLERC 371 (396)
T ss_pred EEEeCCCCHH-HHHHH-HhhHhhcCCEEecC-CCCHHHHHHHHHHHHcC--HHHHHHH
Confidence 9999876676 98877 543 6666665 35569999999999986 5444333
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.22 E-value=3.8e-08 Score=100.44 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=81.3
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhcC-CceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHH---Hhhccccc
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDSK-QRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEE---VLAHQAVA 366 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~---lL~~~~~~ 366 (476)
.+++..|+.. ....+..++++++..+ .+++++-+++ ..+.+..+.. ..|+.+.+++|+.+ ++..+|+
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~----~~~~l~~~~~--~~~V~f~G~v~~~ev~~~~~~aDv- 334 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP----YREELEKMFA--GTPTVFTGMLQGDELSQAYASGDV- 334 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh----HHHHHHHHhc--cCCeEEeccCCHHHHHHHHHHCCE-
Confidence 4556678774 3344666778887764 4555443322 1112222221 24788899998654 8888888
Q ss_pred cccccc---C-chhHHHHHhhCCceeccCCcccchhhHHHHHhh---hcceeecccccCHHHHHHHHHHHHhH
Q 011832 367 GFLTHS---G-WNSTLESIVAGVPMICWPYFADQQINSRFVSEV---WNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 367 ~~I~HG---G-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~---~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
||.-. | -.++.||+++|+|+|+....+ ....+ +. -+.|..++ .-+.++++++|.+++++
T Consensus 335 -~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~-~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 335 -FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYT-PGDVDDCVEKLETLLAD 400 (465)
T ss_pred -EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeC-CCCHHHHHHHHHHHHhC
Confidence 77432 2 347899999999999876432 23334 44 46787775 34789999999999985
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.19 E-value=6.7e-08 Score=94.49 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=81.9
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhc---CCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHH---Hhh
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDS---KQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEE---VLA 361 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~---lL~ 361 (476)
.+..+++..|+... ......+++++..+ +.++++.-.+. .. ..........+++.+.+++++.+ +++
T Consensus 189 ~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~G~~~-~~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 189 GGRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIVGNGL-EL----EEESYELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred CCceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEEcCch-hh----hHHHHhhcCCCeEEEeCCCCHHHHHHHHH
Confidence 34467777887752 23344455555544 34554443322 10 00111112457899999998665 688
Q ss_pred ccccccccc----ccCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 362 HQAVAGFLT----HSGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 362 ~~~~~~~I~----HGG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
.+++ +|+ ..|+ .++.||+++|+|+|+.+.. .+...+ +..+.|..+. .-+.+++.+++.+++++
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~-~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELV-RDGVNGLLFP-PGDAEDLAAALERLIDD 329 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHh-cCCCcEEEEC-CCCHHHHHHHHHHHHhC
Confidence 8888 663 2344 4799999999999987543 455666 5545677775 34689999999999985
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.12 E-value=3.4e-07 Score=91.53 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=58.9
Q ss_pred cCCceEeeccChHH---Hhhccccccccc---ccCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccccc
Q 011832 345 KERGLLVSWVPQEE---VLAHQAVAGFLT---HSGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVC 417 (476)
Q Consensus 345 ~~nv~~~~~~pq~~---lL~~~~~~~~I~---HGG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~ 417 (476)
.++|.+.+++|+.+ +|..+++ +|. +.|. .++.||+++|+|+|+... ......+ +.-..|..++ .-
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv~-~~ 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLVD-FF 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEcC-CC
Confidence 36899999999865 6778887 542 2333 489999999999998643 3455555 5434677665 35
Q ss_pred CHHHHHHHHHHHHhH
Q 011832 418 DRNVVEKMVNDLMVE 432 (476)
Q Consensus 418 ~~~~l~~~i~~~l~~ 432 (476)
+.++++++|.+++++
T Consensus 352 d~~~la~~i~~ll~~ 366 (396)
T cd03818 352 DPDALAAAVIELLDD 366 (396)
T ss_pred CHHHHHHHHHHHHhC
Confidence 799999999999986
No 49
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.12 E-value=2.5e-08 Score=98.57 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=83.2
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH---HHhh
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE---EVLA 361 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~---~lL~ 361 (476)
..|+++.+-.... ...+..+++++..+ +.++++...++.. ....+.... ...+|+.+.+.+++. .+++
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~ 273 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--VREPLHKHL-GDSKRVHLIEPLEYLDFLNLAA 273 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH--HHHHHHHHh-CCCCCEEEECCCChHHHHHHHH
Confidence 4666654322111 24466777777654 3455555333211 011121111 134678888766654 5677
Q ss_pred cccccccccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHHHH
Q 011832 362 HQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAA 441 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a 441 (476)
.+++ +|+-.|.. +.||+++|+|+|.++..++++. .+ + .|.+..+. .+.++|.+++.+++++ +..+++.
T Consensus 274 ~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~-~-~g~~~lv~--~d~~~i~~ai~~ll~~--~~~~~~~ 341 (365)
T TIGR00236 274 NSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TV-E-AGTNKLVG--TDKENITKAAKRLLTD--PDEYKKM 341 (365)
T ss_pred hCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HH-h-cCceEEeC--CCHHHHHHHHHHHHhC--hHHHHHh
Confidence 8887 88877644 7999999999999976665552 22 3 47776553 4889999999999986 5555543
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.11 E-value=2.1e-07 Score=91.35 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=79.1
Q ss_pred CeEEEEEeccccc-cCHHHHHHHHHHHHhc--CCceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccChHH---Hh
Q 011832 289 RSVLYVSFGSITL-LKREQLIEFWHGLVDS--KQRFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQEE---VL 360 (476)
Q Consensus 289 ~~~I~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq~~---lL 360 (476)
++.+++..|+... -..+.+-.++..+... +.++++...+.. ...+..+.+ ...+|+.+.+++|+.+ ++
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 276 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE----REELEELARELGLADRVIFTGFVPREELPDYY 276 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHHcCCCCcEEEeccCChHHHHHHH
Confidence 3456677787652 2233333333333332 234444433221 112222221 2467899999999765 68
Q ss_pred hcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 361 AHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 361 ~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
..+++ +|.- |...++.||+++|+|+|+... ...+..+ +..+.|..++. -+. ++.+++.+++++
T Consensus 277 ~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~-~~~-~~~~~i~~l~~~ 343 (374)
T cd03817 277 KAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP-GDE-ALAEALLRLLQD 343 (374)
T ss_pred HHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC-CCH-HHHHHHHHHHhC
Confidence 88888 6633 345789999999999998754 3345555 55567877763 122 899999999985
No 51
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=3.4e-08 Score=88.71 Aligned_cols=147 Identities=10% Similarity=0.078 Sum_probs=102.9
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccC-hHHHhhcccccc
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVP-QEEVLAHQAVAG 367 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~p-q~~lL~~~~~~~ 367 (476)
..-|+|++|.. .+....-+++..+.+.+.++-.+++.. ......+..+-+ ..+|+.+..... ...|+..+++
T Consensus 158 ~r~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~--~p~l~~l~k~~~-~~~~i~~~~~~~dma~LMke~d~-- 230 (318)
T COG3980 158 KRDILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSS--NPTLKNLRKRAE-KYPNINLYIDTNDMAELMKEADL-- 230 (318)
T ss_pred hheEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCC--CcchhHHHHHHh-hCCCeeeEecchhHHHHHHhcch--
Confidence 34599999954 233455567777877776655555522 111212222211 346777766665 4569999998
Q ss_pred cccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 011832 368 FLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAADRMAT 446 (476)
Q Consensus 368 ~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~ 446 (476)
.|+.||. |+.|++.-|+|.+++|+..-|---|... +.+|+-..+...+..+.....+..+.+| ...|++.-..++
T Consensus 231 aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~l~~~~~~~~~~~i~~d--~~~rk~l~~~~~ 305 (318)
T COG3980 231 AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYHLKDLAKDYEILQIQKD--YARRKNLSFGSK 305 (318)
T ss_pred heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCCCchHHHHHHHHHhhhC--HHHhhhhhhccc
Confidence 9998885 8999999999999999999999999999 8888887776568888888888888776 455555444433
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.08 E-value=3.3e-07 Score=92.05 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=77.7
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhcC---------Cce-EEEECCCCCCCchhhHHHHHHhhc-CCceEe-eccC
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDSK---------QRF-LWVIRPDSVIGEGDALAELVEGTK-ERGLLV-SWVP 355 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~---------~~~-i~~~~~~~~~~~~~~l~~~~~~~~-~nv~~~-~~~p 355 (476)
++..++++.|... ....+..+++|+..+. .++ ++.++.+. ..+.+..+.+... +|+.+. +|+|
T Consensus 230 ~~~~vi~~~grl~--~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~---~~~~l~~~~~~~~l~~~~~~~g~~~ 304 (415)
T cd03816 230 ERPALLVSSTSWT--PDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP---LKEKYLERIKELKLKKVTIRTPWLS 304 (415)
T ss_pred CCceEEEEecccc--CCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc---cHHHHHHHHHHcCCCcEEEEcCcCC
Confidence 3445667777764 2344445566655431 123 23333221 1223332322222 455544 6888
Q ss_pred hHH---Hhhccccccccc-c------cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHH
Q 011832 356 QEE---VLAHQAVAGFLT-H------SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKM 425 (476)
Q Consensus 356 q~~---lL~~~~~~~~I~-H------GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~ 425 (476)
..+ +|+.+++ ++. + |--+++.||+++|+|+|+... ......+ ++-+.|..++ +.++|+++
T Consensus 305 ~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv~---d~~~la~~ 374 (415)
T cd03816 305 AEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVFG---DSEELAEQ 374 (415)
T ss_pred HHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEEC---CHHHHHHH
Confidence 655 6888998 552 1 123479999999999998643 2444555 6656888774 79999999
Q ss_pred HHHHHhH
Q 011832 426 VNDLMVE 432 (476)
Q Consensus 426 i~~~l~~ 432 (476)
|.+++++
T Consensus 375 i~~ll~~ 381 (415)
T cd03816 375 LIDLLSN 381 (415)
T ss_pred HHHHHhc
Confidence 9999885
No 53
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.07 E-value=5.8e-07 Score=88.79 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=80.1
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhc----CCceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccCh-HHHhhc
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDS----KQRFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQ-EEVLAH 362 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq-~~lL~~ 362 (476)
..+++.+|... +...+..++++++.+ +.++++...+.. ...+..+.. .+.+++.+.++.++ .++|..
T Consensus 197 ~~~il~~g~l~--~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 270 (371)
T cd04962 197 EKVLIHISNFR--PVKRIDDVIRIFAKVRKEVPARLLLVGDGPE----RSPAERLARELGLQDDVLFLGKQDHVEELLSI 270 (371)
T ss_pred CeEEEEecccc--cccCHHHHHHHHHHHHhcCCceEEEEcCCcC----HHHHHHHHHHcCCCceEEEecCcccHHHHHHh
Confidence 45677778775 233344455555432 445555533321 112222222 23567888888775 468988
Q ss_pred cccccccc----ccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 363 QAVAGFLT----HSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 363 ~~~~~~I~----HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+++ +|. -|.-.++.||+++|+|+|+... ...+..+ ++-..|..++ .-+.+++.++|.+++++
T Consensus 271 ~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~-~~~~~~l~~~i~~l~~~ 336 (371)
T cd04962 271 ADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVD-VGDVEAMAEYALSLLED 336 (371)
T ss_pred cCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcC-CCCHHHHHHHHHHHHhC
Confidence 888 552 2334599999999999998644 3455555 5534676665 34789999999999985
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.07 E-value=4.1e-07 Score=90.75 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=83.6
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCc--hhhHHHHHH--hhcCCceEeeccChHH--
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGE--GDALAELVE--GTKERGLLVSWVPQEE-- 358 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~--~~~l~~~~~--~~~~nv~~~~~~pq~~-- 358 (476)
..+++..|+... ......+++++..+ +.++++..++...... ...+..+.+ .+.+|+.+.+|+|+.+
T Consensus 220 ~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 297 (398)
T cd03800 220 KPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLP 297 (398)
T ss_pred CcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHH
Confidence 456777887752 22334455555443 3455555443321110 011111112 2347899999999866
Q ss_pred -Hhhcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 359 -VLAHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 359 -lL~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++..+++ +++. |--.++.||+++|+|+|+....+ ....+ ++.+.|..++ .-+.+++.++|.+++++
T Consensus 298 ~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~-~~~~~~l~~~i~~l~~~ 368 (398)
T cd03800 298 ALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVD-PRDPEALAAALRRLLTD 368 (398)
T ss_pred HHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeC-CCCHHHHHHHHHHHHhC
Confidence 5888888 6643 22358999999999999876433 44556 6656888776 34799999999999985
No 55
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.06 E-value=2.2e-07 Score=91.64 Aligned_cols=130 Identities=22% Similarity=0.196 Sum_probs=78.7
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhc----CCceEEEECCCCCCCchhhHHHH-HHhhcCCceEeeccChHH---Hh
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDS----KQRFLWVIRPDSVIGEGDALAEL-VEGTKERGLLVSWVPQEE---VL 360 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~l~~~-~~~~~~nv~~~~~~pq~~---lL 360 (476)
++.+++..|+... ......+++++..+ +.++++. +.+.. ...+..+ .....+|+.+.+++++.+ ++
T Consensus 219 ~~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 292 (394)
T cd03794 219 DKFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRFLIV-GDGPE---KEELKELAKALGLDNVTFLGRVPKEELPELL 292 (394)
T ss_pred CcEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEEEEe-CCccc---HHHHHHHHHHcCCCcEEEeCCCChHHHHHHH
Confidence 4467777887752 22333344444433 3344433 32211 1122111 122347899999998765 78
Q ss_pred hcccccccccccC---------chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 361 AHQAVAGFLTHSG---------WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 361 ~~~~~~~~I~HGG---------~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|..++ .-+.++++++|.++++
T Consensus 293 ~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~-~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 293 AAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVP-PGDPEALAAAILELLD 364 (394)
T ss_pred HhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeC-CCCHHHHHHHHHHHHh
Confidence 88888 664322 234799999999999998765433 33 3335666665 2488999999999997
Q ss_pred H
Q 011832 432 E 432 (476)
Q Consensus 432 ~ 432 (476)
+
T Consensus 365 ~ 365 (394)
T cd03794 365 D 365 (394)
T ss_pred C
Confidence 5
No 56
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.04 E-value=1.1e-06 Score=88.39 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=94.4
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhcC----CceEEEECCCCCCCchhhHHHHHHhh-cCCceEeeccChHH---Hhh
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDSK----QRFLWVIRPDSVIGEGDALAELVEGT-KERGLLVSWVPQEE---VLA 361 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~----~~~i~~~~~~~~~~~~~~l~~~~~~~-~~nv~~~~~~pq~~---lL~ 361 (476)
..+++..|+.. +...+..++++++.+. .+++. ++.+.. .+.+..+.... .+|+.+.+|+|+.+ +++
T Consensus 229 ~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~i-vG~g~~---~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~ 302 (412)
T PRK10307 229 KKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVI-CGQGGG---KARLEKMAQCRGLPNVHFLPLQPYDRLPALLK 302 (412)
T ss_pred CEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEE-ECCChh---HHHHHHHHHHcCCCceEEeCCCCHHHHHHHHH
Confidence 35666678775 3344555666665542 23333 332211 11222222211 24798999998754 788
Q ss_pred cccccccccccCc------hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHH
Q 011832 362 HQAVAGFLTHSGW------NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKE 435 (476)
Q Consensus 362 ~~~~~~~I~HGG~------~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~ 435 (476)
.+|+-.+.+..+. +.+.|++.+|+|+|+....+. .....+ + +.|..++ .-+.++|+++|.+++++ +
T Consensus 303 ~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~-~~d~~~la~~i~~l~~~--~ 374 (412)
T PRK10307 303 MADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVE-PESVEALVAAIAALARQ--A 374 (412)
T ss_pred hcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeC-CCCHHHHHHHHHHHHhC--H
Confidence 8888444444321 246899999999999865431 112233 4 6787775 35789999999999985 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011832 436 EFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKM 471 (476)
Q Consensus 436 ~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 471 (476)
..+ .++++..++.+.+.-+....++.+++.+.+
T Consensus 375 ~~~---~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 375 LLR---PKLGTVAREYAERTLDKENVLRQFIADIRG 407 (412)
T ss_pred HHH---HHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 222 223333333333344555666666666554
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.04 E-value=6.2e-07 Score=87.29 Aligned_cols=312 Identities=14% Similarity=0.053 Sum_probs=160.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHH
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLME 88 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (476)
||++++....|+......++++|.++||+|++++......... ....+.+..++.... ......
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~------~~~~~~ 64 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEEL----------EALGVKVIPIPLDRR------GINPFK 64 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccc----------ccCCceEEecccccc------ccChHh
Confidence 5788887778899999999999999999999999854432100 011245444432110 011111
Q ss_pred HHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc--hHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCCcC
Q 011832 89 MFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME--FVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAY 166 (476)
Q Consensus 89 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~--~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 166 (476)
.+... ..+...++.. +||+|++..... .+..++...+.|.+..........
T Consensus 65 ~~~~~-----~~~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------- 117 (359)
T cd03808 65 DLKAL-----LRLYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV-------------------- 117 (359)
T ss_pred HHHHH-----HHHHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh--------------------
Confidence 11111 2345556665 889999876544 233344435555554432110000
Q ss_pred CccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhC----CCe
Q 011832 167 DEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKC----PKV 242 (476)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~----p~~ 242 (476)
..... . ......... ......++.+++.|....+.- .... ...
T Consensus 118 -----------~~~~~-~--------------~~~~~~~~~--~~~~~~~d~ii~~s~~~~~~~-----~~~~~~~~~~~ 164 (359)
T cd03808 118 -----------FTSGG-L--------------KRRLYLLLE--RLALRFTDKVIFQNEDDRDLA-----LKLGIIKKKKT 164 (359)
T ss_pred -----------hccch-h--------------HHHHHHHHH--HHHHhhccEEEEcCHHHHHHH-----HHhcCCCcCce
Confidence 00000 0 000011111 112345688888886554332 2211 123
Q ss_pred eeeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhc---C-
Q 011832 243 YTIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDS---K- 318 (476)
Q Consensus 243 ~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~- 318 (476)
..+.+...+.... .... .. .++++.+++..|+... ......++++++.+ +
T Consensus 165 ~~~~~~~~~~~~~------------------~~~~--~~----~~~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~ 218 (359)
T cd03808 165 VLIPGSGVDLDRF------------------SPSP--EP----IPEDDPVFLFVARLLK--DKGIDELLEAARILKAKGP 218 (359)
T ss_pred EEecCCCCChhhc------------------Cccc--cc----cCCCCcEEEEEecccc--ccCHHHHHHHHHHHHhcCC
Confidence 3333322221100 0000 00 1234567888887752 22334444554433 2
Q ss_pred -CceEEEECCCCCCCchhh-HHHHHHhhcCCceEeeccCh-HHHhhccccccccccc----CchhHHHHHhhCCceeccC
Q 011832 319 -QRFLWVIRPDSVIGEGDA-LAELVEGTKERGLLVSWVPQ-EEVLAHQAVAGFLTHS----GWNSTLESIVAGVPMICWP 391 (476)
Q Consensus 319 -~~~i~~~~~~~~~~~~~~-l~~~~~~~~~nv~~~~~~pq-~~lL~~~~~~~~I~HG----G~~s~~eal~~GvP~l~iP 391 (476)
.++++...+......... +.. ....+++.+.++..+ .+++..+++ +|.-+ -.+++.||+.+|+|+|+.+
T Consensus 219 ~~~l~i~G~~~~~~~~~~~~~~~--~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~ 294 (359)
T cd03808 219 NVRLLLVGDGDEENPAAILEIEK--LGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATD 294 (359)
T ss_pred CeEEEEEcCCCcchhhHHHHHHh--cCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEec
Confidence 344444332211100000 101 113467888777544 468989988 66543 2578999999999999865
Q ss_pred CcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 392 YFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 392 ~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
.. .+...+ ++.+.|..++ .-+.+++.++|.+++++
T Consensus 295 ~~----~~~~~i-~~~~~g~~~~-~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 295 VP----GCREAV-IDGVNGFLVP-PGDAEALADAIERLIED 329 (359)
T ss_pred CC----Cchhhh-hcCcceEEEC-CCCHHHHHHHHHHHHhC
Confidence 43 344555 5546777665 34789999999998885
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.04 E-value=3.2e-07 Score=90.25 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=72.7
Q ss_pred hcCCceEeeccC-hH---HHhhcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc
Q 011832 344 TKERGLLVSWVP-QE---EVLAHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD 415 (476)
Q Consensus 344 ~~~nv~~~~~~p-q~---~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~ 415 (476)
...++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ ...+.|..++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeC-
Confidence 456788889998 43 47888888 6664 3357999999999999986542 233344 4434666554
Q ss_pred ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 416 VCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 416 ~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
..+.+++.+++.+++++ +... .++++..++...+.-+.....+++++-+.
T Consensus 314 ~~~~~~~~~~l~~l~~~--~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 314 PGDPEDLAEGIEWLLAD--PDER---EELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred CCCHHHHHHHHHHHHhC--HHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35789999999999985 3322 22333333322234555566666665543
No 59
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.04 E-value=9.3e-07 Score=86.21 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=94.2
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhcCC---ce-EEEECCCCCCCchhhHHHHH--HhhcCCceEeeccChH---HH
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDSKQ---RF-LWVIRPDSVIGEGDALAELV--EGTKERGLLVSWVPQE---EV 359 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~---~~-i~~~~~~~~~~~~~~l~~~~--~~~~~nv~~~~~~pq~---~l 359 (476)
+..+++.+|+.. ....+..+++++..+.. ++ ++.++.+. ....+..+. ...++++.+.+++++. ++
T Consensus 198 ~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 272 (374)
T cd03801 198 DEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIVGDGP---LREELEALAAELGLGDRVTFLGFVPDEDLPAL 272 (374)
T ss_pred CCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH---HHHHHHHHHHHhCCCcceEEEeccChhhHHHH
Confidence 345667778765 23334455565544322 23 23333221 011111111 1256789999999755 47
Q ss_pred hhccccccccc----ccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHH
Q 011832 360 LAHQAVAGFLT----HSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKE 435 (476)
Q Consensus 360 L~~~~~~~~I~----HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~ 435 (476)
|..+++ +|. -|..+++.||+++|+|+|+.+. ......+ ++.+.|..++ ..+.+++.++|.+++++ +
T Consensus 273 ~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~-~~~~~~l~~~i~~~~~~--~ 342 (374)
T cd03801 273 YAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVP-PGDPEALAEAILRLLDD--P 342 (374)
T ss_pred HHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeC-CCCHHHHHHHHHHHHcC--h
Confidence 888888 663 3556799999999999998765 3455566 5446777775 34689999999999985 3
Q ss_pred HHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 436 EFM-RAADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 436 ~y~-~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
..+ +.+++..+.+.+ .-+-.+..+++++.
T Consensus 343 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 372 (374)
T cd03801 343 ELRRRLGEAARERVAE----RFSWDRVAARTEEV 372 (374)
T ss_pred HHHHHHHHHHHHHHHH----hcCHHHHHHHHHHh
Confidence 333 322222223222 34445555555543
No 60
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.97 E-value=1.6e-06 Score=82.98 Aligned_cols=300 Identities=15% Similarity=0.156 Sum_probs=156.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch-hhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNH-ERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQL 86 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (476)
|||.|-- ...-|+..+..+.++|.++||+|.+.+-.... ..+.+.. ++.+..+... . .+.
T Consensus 1 MkIwiDi-~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y----------g~~y~~iG~~------g--~~~ 61 (335)
T PF04007_consen 1 MKIWIDI-THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY----------GIDYIVIGKH------G--DSL 61 (335)
T ss_pred CeEEEEC-CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc----------CCCeEEEcCC------C--CCH
Confidence 6776655 44459999999999999999999998875432 2222222 2566655411 1 122
Q ss_pred HHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCCcC
Q 011832 87 MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAY 166 (476)
Q Consensus 87 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 166 (476)
...+...... ...+.+++.+. +||++|+- .+..+..+|..+|+|+|.|.=+.....
T Consensus 62 ~~Kl~~~~~R-~~~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~-------------------- 117 (335)
T PF04007_consen 62 YGKLLESIER-QYKLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIA-------------------- 117 (335)
T ss_pred HHHHHHHHHH-HHHHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhc--------------------
Confidence 2222222111 34455566665 88999974 455778899999999999954321110
Q ss_pred CccccccccccCCCCcccccCCCCCccccCCCCc-hHHHHHHHHhhcCCCCcEEE-EcchhhcchHHHHHHHhhCCCeee
Q 011832 167 DEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTD-RDLQVLKNATQQSPRAHALI-LNTFEDLEEPILSHIRTKCPKVYT 244 (476)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l-~~s~~~l~~~~l~~~~~~~p~~~~ 244 (476)
..++. +++ ......+.... ...... ..+ +.+. ++...+ ..+
T Consensus 118 ----------~~~Lt--~Pl---a~~i~~P~~~~~~~~~~~------G~~-~~i~~y~G~~E---------------~ay 160 (335)
T PF04007_consen 118 ----------QNRLT--LPL---ADVIITPEAIPKEFLKRF------GAK-NQIRTYNGYKE---------------LAY 160 (335)
T ss_pred ----------cceee--hhc---CCeeECCcccCHHHHHhc------CCc-CCEEEECCeee---------------EEe
Confidence 00110 000 00000000000 000000 000 0111 222221 111
Q ss_pred eCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEecccc----ccCHHHHHHHHHHHHhcCCc
Q 011832 245 IGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSIT----LLKREQLIEFWHGLVDSKQR 320 (476)
Q Consensus 245 vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~----~~~~~~~~~~~~a~~~~~~~ 320 (476)
+=+ |++++++.+-++-. +.+.|++=+.+.. ......+..+++.+++.+..
T Consensus 161 l~~-------------------------F~Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~ 214 (335)
T PF04007_consen 161 LHP-------------------------FKPDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN 214 (335)
T ss_pred ecC-------------------------CCCChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce
Confidence 211 12344444555422 4567777766532 22345566788888888776
Q ss_pred eEEEECCCCCCCchhhHHHHHHhhcCCceE-eeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccchhh
Q 011832 321 FLWVIRPDSVIGEGDALAELVEGTKERGLL-VSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQIN 399 (476)
Q Consensus 321 ~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~n 399 (476)
++..-+... ...+.+.. ++.+ ..-+...+||.++++ +|+-|| ....||...|+|.+-+ +-++-...
T Consensus 215 vV~ipr~~~-------~~~~~~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~v 281 (335)
T PF04007_consen 215 VVIIPRYED-------QRELFEKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAV 281 (335)
T ss_pred EEEecCCcc-------hhhHHhcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhH
Confidence 444433221 11111111 2332 355566689999998 999887 7789999999999975 22332223
Q ss_pred HHHHHhhhcceeecccccCHHHHHHHHHHHH
Q 011832 400 SRFVSEVWNLGLDMKDVCDRNVVEKMVNDLM 430 (476)
Q Consensus 400 a~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l 430 (476)
-+.+.++ |. +...-+.+++.+.|.+.+
T Consensus 282 d~~L~~~-Gl---l~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 282 DKYLIEK-GL---LYHSTDPDEIVEYVRKNL 308 (335)
T ss_pred HHHHHHC-CC---eEecCCHHHHHHHHHHhh
Confidence 3445243 65 222346777777555443
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.96 E-value=1.9e-07 Score=92.18 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=85.9
Q ss_pred CCeEEEEEecccccc-CHHHHHHHHHHHHhcCCc-eEEEECCCCCCCchhhHHHHHHhh---cCCceEeeccChH---HH
Q 011832 288 VRSVLYVSFGSITLL-KREQLIEFWHGLVDSKQR-FLWVIRPDSVIGEGDALAELVEGT---KERGLLVSWVPQE---EV 359 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~l~~~~~~~---~~nv~~~~~~pq~---~l 359 (476)
+++.|++++|..... ....+..++++++.+... +.+.+.+.... ...+....... .+|+.+.+..++. .+
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~--~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l 274 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRT--RPRIREAGLEFLGHHPNVLLISPLGYLYFLLL 274 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCCh--HHHHHHHHHhhccCCCCEEEECCcCHHHHHHH
Confidence 345778888876532 456677888888776432 44444322111 11332222222 4678777665543 46
Q ss_pred hhcccccccccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 360 LAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 360 L~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+..+++ ||+-+| |.+.||+++|+|+|+++.. |. +..+ .+.|++..+.. +.+.|.++|.+++++
T Consensus 275 ~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~~~--~~~~i~~~i~~ll~~ 337 (363)
T cd03786 275 LKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLVGT--DPEAILAAIEKLLSD 337 (363)
T ss_pred HHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEecCC--CHHHHHHHHHHHhcC
Confidence 777888 999998 7788999999999998743 22 3334 33477766642 589999999999986
No 62
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.95 E-value=1.8e-06 Score=84.62 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=79.4
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhcC---Cce-EEEECCCCCCCchhhHHHH--HHhhcCCceEeeccChHH---H
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDSK---QRF-LWVIRPDSVIGEGDALAEL--VEGTKERGLLVSWVPQEE---V 359 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~---~~~-i~~~~~~~~~~~~~~l~~~--~~~~~~nv~~~~~~pq~~---l 359 (476)
+..+++..|+.. +......+++++..+. ..+ ++.++... ......+..+ ...+++++.+.+|+++.+ +
T Consensus 202 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 278 (375)
T cd03821 202 DKRIILFLGRLH--PKKGLDLLIEAFAKLAERFPDWHLVIAGPDE-GGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAA 278 (375)
T ss_pred CCcEEEEEeCcc--hhcCHHHHHHHHHHhhhhcCCeEEEEECCCC-cchHHHHHHHHHhcCccceEEEcCCCChHHHHHH
Confidence 345677778765 2333444555554432 223 23333221 1111111221 123467899999999654 6
Q ss_pred hhcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 360 LAHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 360 L~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+..+++ +|.- |-..++.||+++|+|+|+.+. ......+ .. +.|...+. +.+++.++|.+++++
T Consensus 279 ~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~--~~~~~~~~i~~l~~~ 345 (375)
T cd03821 279 LADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD--DVDALAAALRRALEL 345 (375)
T ss_pred HhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC--ChHHHHHHHHHHHhC
Confidence 888888 5432 224689999999999999754 3345555 55 77777653 459999999999986
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.94 E-value=3e-06 Score=85.00 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=60.1
Q ss_pred hcCCceEeeccChH---HHhhccccccccc---ccC-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccc
Q 011832 344 TKERGLLVSWVPQE---EVLAHQAVAGFLT---HSG-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDV 416 (476)
Q Consensus 344 ~~~nv~~~~~~pq~---~lL~~~~~~~~I~---HGG-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~ 416 (476)
+.+++.+.+++|+. ++|..+++ +|. +.| ..++.||+++|+|+|+.... .....+ ++-+.|..++ .
T Consensus 281 l~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~-~ 352 (405)
T TIGR03449 281 IADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVD-G 352 (405)
T ss_pred CCceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECC-C
Confidence 34689999999875 47888888 553 233 35899999999999987543 234445 5545677765 3
Q ss_pred cCHHHHHHHHHHHHhH
Q 011832 417 CDRNVVEKMVNDLMVE 432 (476)
Q Consensus 417 ~~~~~l~~~i~~~l~~ 432 (476)
-+.++++++|.+++++
T Consensus 353 ~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 353 HDPADWADALARLLDD 368 (405)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4789999999999985
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.93 E-value=1.9e-06 Score=85.85 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=58.7
Q ss_pred hcCCceEeeccChH---HHhhcccccccccc---cC-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccc
Q 011832 344 TKERGLLVSWVPQE---EVLAHQAVAGFLTH---SG-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDV 416 (476)
Q Consensus 344 ~~~nv~~~~~~pq~---~lL~~~~~~~~I~H---GG-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~ 416 (476)
+.+||.+.+++|+. .+|..+++ ++.. -| ..++.||+++|+|+|+.-..+ ....+ ..-+.|...+
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i-~~~~~g~~~~-- 348 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETV-VDGETGFLCE-- 348 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHh-ccCCceEEeC--
Confidence 45789999999986 47888887 5532 22 357899999999999974432 33445 4435676665
Q ss_pred cCHHHHHHHHHHHHhH
Q 011832 417 CDRNVVEKMVNDLMVE 432 (476)
Q Consensus 417 ~~~~~l~~~i~~~l~~ 432 (476)
.+.++++++|.+++++
T Consensus 349 ~~~~~~a~~i~~l~~~ 364 (392)
T cd03805 349 PTPEEFAEAMLKLAND 364 (392)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3889999999999985
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.92 E-value=3.1e-06 Score=82.81 Aligned_cols=132 Identities=19% Similarity=0.208 Sum_probs=81.5
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhcC---CceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccChH---HHh
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDSK---QRFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQE---EVL 360 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~---~~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq~---~lL 360 (476)
+..+++..|+... ......++++++... ..+.+.+-+.... ...+....+ ..++|+.+.+++++. +++
T Consensus 201 ~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 276 (377)
T cd03798 201 DKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGPL--REALEALAAELGLEDRVTFLGAVPHEEVPAYY 276 (377)
T ss_pred CceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc--hHHHHHHHHhcCCcceEEEeCCCCHHHHHHHH
Confidence 3467777887752 233344555554432 2333333222111 112222211 245789999999875 467
Q ss_pred hcccccccc----cccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 361 AHQAVAGFL----THSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 361 ~~~~~~~~I----~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
..+++ +| +-|..+++.||+++|+|+|+-+.. .....+ +..+.|...+ .-+.+++.++|.+++++
T Consensus 277 ~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~~-~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 277 AAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLVP-PGDPEALAEAILRLLAD 344 (377)
T ss_pred HhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEEC-CCCHHHHHHHHHHHhcC
Confidence 78887 55 235567899999999999986543 344555 5545666665 45899999999999996
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.91 E-value=1.3e-06 Score=88.22 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=58.4
Q ss_pred CceEeeccCh-HHHhhccccccccc--c--cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHH
Q 011832 347 RGLLVSWVPQ-EEVLAHQAVAGFLT--H--SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNV 421 (476)
Q Consensus 347 nv~~~~~~pq-~~lL~~~~~~~~I~--H--GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 421 (476)
++.+.+...+ ..+++.+++ +|+. . ||..++.||+++|+|+|+.|...++......+ .+.|++.... +.++
T Consensus 303 ~v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~~---d~~~ 377 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQVE---DAED 377 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEEC---CHHH
Confidence 3444444333 458888887 2331 1 33346999999999999999988888887777 5557666543 7899
Q ss_pred HHHHHHHHHhH
Q 011832 422 VEKMVNDLMVE 432 (476)
Q Consensus 422 l~~~i~~~l~~ 432 (476)
|+++|.++++|
T Consensus 378 La~~l~~ll~~ 388 (425)
T PRK05749 378 LAKAVTYLLTD 388 (425)
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.86 E-value=1e-05 Score=80.89 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=76.8
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHh---c--CCceEEEECCCCCCCchhhHHHHHHh--hcCCceEeeccChHH---
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVD---S--KQRFLWVIRPDSVIGEGDALAELVEG--TKERGLLVSWVPQEE--- 358 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~l~~~~~~--~~~nv~~~~~~pq~~--- 358 (476)
+..+++..|.... ......+++++.. . +..+++.-+++ ....+.++.++ +.++|.+.+|+|+.+
T Consensus 192 ~~~~i~~~grl~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~----~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~ 265 (398)
T cd03796 192 DKITIVVISRLVY--RKGIDLLVGIIPEICKKHPNVRFIIGGDGP----KRILLEEMREKYNLQDRVELLGAVPHERVRD 265 (398)
T ss_pred CceEEEEEeccch--hcCHHHHHHHHHHHHhhCCCEEEEEEeCCc----hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHH
Confidence 3467777787742 2333344555432 2 23444443322 11123333232 456789999998754
Q ss_pred Hhhccccccccc---ccCch-hHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 359 VLAHQAVAGFLT---HSGWN-STLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 359 lL~~~~~~~~I~---HGG~~-s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+|+.+++ +|. +-|+| ++.||+++|+|+|+.+..+ ....+ +. |.+.... .+.+++.+++.+++++
T Consensus 266 ~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~~--~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 266 VLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLAE--PDVESIVRKLEEAISI 333 (398)
T ss_pred HHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-CceeecC--CCHHHHHHHHHHHHhC
Confidence 7888888 553 33444 9999999999999977643 23344 44 4443333 3789999999999884
No 68
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.85 E-value=2.7e-06 Score=83.35 Aligned_cols=131 Identities=17% Similarity=0.185 Sum_probs=84.3
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhcC-CceEEEECCCCCCCchhhHHHHH--HhhcCCceEeeccChH---HHhhcc
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDSK-QRFLWVIRPDSVIGEGDALAELV--EGTKERGLLVSWVPQE---EVLAHQ 363 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~l~~~~--~~~~~nv~~~~~~pq~---~lL~~~ 363 (476)
..+++..|... +......++++++++. .++++...++ ....+.++. ....+||.+.+|+|+. .++..+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~a 264 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAAC 264 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhC
Confidence 35677788765 3344566778887776 4444443322 111222222 1245799999999975 478788
Q ss_pred ccccccc---ccCch-hHHHHHhhCCceeccCCcccchhhHHHHHhh-hcceeecccccCHHHHHHHHHHHHhH
Q 011832 364 AVAGFLT---HSGWN-STLESIVAGVPMICWPYFADQQINSRFVSEV-WNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 364 ~~~~~I~---HGG~~-s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~-~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++-.+-+ +.|.| ++.||+++|+|+|+....+... .+ .. -+.|..++ .-+.+++.++|.+++++
T Consensus 265 d~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i-~~~~~~g~~~~-~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 265 DVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YV-NLHGVTGLVVP-PGDPAALAEAIRRLLED 332 (357)
T ss_pred CEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HH-hhCCCceEEeC-CCCHHHHHHHHHHHHHC
Confidence 8833333 23444 7999999999999976554443 33 22 36676665 35899999999999995
No 69
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.85 E-value=4.9e-06 Score=80.57 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=61.3
Q ss_pred hcCCceEeeccCh-HHHhhccccccccccc----CchhHHHHHhhCCceeccCCcccchhhHHHHHhhhc-ceeeccccc
Q 011832 344 TKERGLLVSWVPQ-EEVLAHQAVAGFLTHS----GWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWN-LGLDMKDVC 417 (476)
Q Consensus 344 ~~~nv~~~~~~pq-~~lL~~~~~~~~I~HG----G~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G-~G~~~~~~~ 417 (476)
.+.++.+.++... ..++..+++ +|.-. .-+++.||+++|+|+|+.+..+.+ ..+.+. | .|..++ .-
T Consensus 233 ~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~-~~ 304 (348)
T cd03820 233 LEDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVP-NG 304 (348)
T ss_pred CCCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeC-CC
Confidence 3456777776433 468888888 66543 256899999999999987554433 233243 4 777775 45
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011832 418 DRNVVEKMVNDLMVERKEEFMRAADR 443 (476)
Q Consensus 418 ~~~~l~~~i~~~l~~~~~~y~~~a~~ 443 (476)
+.+++.++|.+++++ ++.+++..+
T Consensus 305 ~~~~~~~~i~~ll~~--~~~~~~~~~ 328 (348)
T cd03820 305 DVEALAEALLRLMED--EELRKRMGA 328 (348)
T ss_pred CHHHHHHHHHHHHcC--HHHHHHHHH
Confidence 789999999999996 554444333
No 70
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.82 E-value=8e-06 Score=80.51 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=62.1
Q ss_pred hcCCceEeeccChHH---Hhhcccccccccc----------cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcce
Q 011832 344 TKERGLLVSWVPQEE---VLAHQAVAGFLTH----------SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLG 410 (476)
Q Consensus 344 ~~~nv~~~~~~pq~~---lL~~~~~~~~I~H----------GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G 410 (476)
+++++.+.+++|+.+ +++.+++ +|.- |-.+++.||+++|+|+|+-+..+ ++..+ +..+.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i-~~~~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAV-EDGETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhe-ecCCee
Confidence 467899999998754 5888888 5532 23568999999999999876643 55666 555778
Q ss_pred eecccccCHHHHHHHHHHHHhH
Q 011832 411 LDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 411 ~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
..++ .-+.+++.++|.+++++
T Consensus 316 ~~~~-~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 316 LLVP-EGDVAALAAALGRLLAD 336 (367)
T ss_pred EEEC-CCCHHHHHHHHHHHHcC
Confidence 7775 35789999999999985
No 71
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.81 E-value=1.2e-05 Score=81.37 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=93.0
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCc-h---h----hHHHHHHh--hcCCceEeeccC
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGE-G---D----ALAELVEG--TKERGLLVSWVP 355 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~-~---~----~l~~~~~~--~~~nv~~~~~~p 355 (476)
.++++.|... +...+..+++|+..+ ..++++..+.+..... . . .+.++.++ +.++|.+.++++
T Consensus 249 ~~i~~vGrl~--~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~ 326 (439)
T TIGR02472 249 PPILAISRPD--RRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHR 326 (439)
T ss_pred cEEEEEcCCc--ccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCC
Confidence 4667778774 334455567777532 1234444443221100 0 0 01111122 467888888888
Q ss_pred hHHH---hhcc----ccccccccc---C-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHH
Q 011832 356 QEEV---LAHQ----AVAGFLTHS---G-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEK 424 (476)
Q Consensus 356 q~~l---L~~~----~~~~~I~HG---G-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~ 424 (476)
+.++ ++.+ ++ ||... | -.++.||+++|+|+|+.... .+...+ +.-..|..++ .-+.+.+++
T Consensus 327 ~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv~-~~d~~~la~ 398 (439)
T TIGR02472 327 PDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLVD-VLDLEAIAS 398 (439)
T ss_pred HHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEeC-CCCHHHHHH
Confidence 7654 6544 56 77543 3 35999999999999988653 244445 5534677665 357899999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 425 MVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 425 ~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
+|.+++++ +.. .+++++..++.+.+.-+-...++++.+-
T Consensus 399 ~i~~ll~~--~~~---~~~~~~~a~~~~~~~fsw~~~~~~~~~l 437 (439)
T TIGR02472 399 ALEDALSD--SSQ---WQLWSRNGIEGVRRHYSWDAHVEKYLRI 437 (439)
T ss_pred HHHHHHhC--HHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999986 432 2444444444333344444445554443
No 72
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.81 E-value=1.7e-05 Score=85.60 Aligned_cols=143 Identities=10% Similarity=0.226 Sum_probs=85.0
Q ss_pred hhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcC-----CceEEEECCCCCCC-----ch---hhHHHHHH--
Q 011832 278 SCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSK-----QRFLWVIRPDSVIG-----EG---DALAELVE-- 342 (476)
Q Consensus 278 ~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~-----~~---~~l~~~~~-- 342 (476)
++..|+.. +++ .++++.|... +..-+..+++|+..+. .++.+.++...... .. ..+..+.+
T Consensus 469 ~l~r~~~~-pdk-pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 469 EIMRFFTN-PRK-PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred HHHhhccc-CCC-cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 45667654 333 4556667765 3444556777776542 24444444321110 00 11112222
Q ss_pred hhcCCceEeeccChHH---Hhhcc----cccccccc---cCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhccee
Q 011832 343 GTKERGLLVSWVPQEE---VLAHQ----AVAGFLTH---SGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGL 411 (476)
Q Consensus 343 ~~~~nv~~~~~~pq~~---lL~~~----~~~~~I~H---GG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~ 411 (476)
.+.++|.+.+++++.+ ++..+ ++ ||+- =|+ .++.||+++|+|+|+....+ ....+ +.-.-|.
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGl 617 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGL 617 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEE
Confidence 2457788889988765 56555 35 7663 343 48999999999999986543 22333 4434577
Q ss_pred ecccccCHHHHHHHHHHHHhH
Q 011832 412 DMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 412 ~~~~~~~~~~l~~~i~~~l~~ 432 (476)
.++ .-+.+.|+++|.+++++
T Consensus 618 LVd-P~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 618 LVD-PHDQQAIADALLKLVAD 637 (1050)
T ss_pred EEC-CCCHHHHHHHHHHHhhC
Confidence 665 35889999999999986
No 73
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.80 E-value=4.9e-06 Score=80.85 Aligned_cols=127 Identities=12% Similarity=0.024 Sum_probs=80.4
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHH-HHHh--hcCCceEeeccChHH---Hhhcccc
Q 011832 292 LYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAE-LVEG--TKERGLLVSWVPQEE---VLAHQAV 365 (476)
Q Consensus 292 I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~-~~~~--~~~nv~~~~~~pq~~---lL~~~~~ 365 (476)
+.+..|... +......++++++..+.++++.-.+.. ...+.. .... +.+++.+.+++++.+ +++.+++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~ 246 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD----PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA 246 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC----HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE
Confidence 445567664 334445677888887777666544321 111211 1111 358899999999864 6888888
Q ss_pred ccccc--ccCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 366 AGFLT--HSGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 366 ~~~I~--HGG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
-.+-+ +-|+ .++.||+++|+|+|+.... .+...+ +....|..++. .+++.+++.++++.
T Consensus 247 ~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 247 LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVDS---VEELAAAVARADRL 308 (335)
T ss_pred EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeCC---HHHHHHHHHHHhcc
Confidence 33323 2343 4899999999999987653 333445 55236777653 89999999988763
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.76 E-value=1.4e-05 Score=78.27 Aligned_cols=130 Identities=20% Similarity=0.206 Sum_probs=80.0
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCchhhHHHHHHh--hcCCceEeeccChHH---
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGEGDALAELVEG--TKERGLLVSWVPQEE--- 358 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~l~~~~~~--~~~nv~~~~~~pq~~--- 358 (476)
++.+++.+|+.. +...+..++++++.+ +..+++...++. ...+..+... +++|+.+.+++|+.+
T Consensus 178 ~~~~i~~~g~~~--~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~ 251 (355)
T cd03799 178 EPLRILSVGRLV--EKKGLDYLLEALALLKDRGIDFRLDIVGDGPL----RDELEALIAELGLEDRVTLLGAKSQEEVRE 251 (355)
T ss_pred CCeEEEEEeeec--cccCHHHHHHHHHHHhhcCCCeEEEEEECCcc----HHHHHHHHHHcCCCCeEEECCcCChHHHHH
Confidence 345667778764 222334444544432 234444433221 1122222222 467899999998654
Q ss_pred Hhhccccccccc----------ccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHH
Q 011832 359 VLAHQAVAGFLT----------HSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVND 428 (476)
Q Consensus 359 lL~~~~~~~~I~----------HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~ 428 (476)
++..+++ +|. -|.-+++.||+++|+|+|+.+..+ ....+ +....|..++ .-+.+++.++|.+
T Consensus 252 ~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~~~-~~~~~~l~~~i~~ 323 (355)
T cd03799 252 LLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLLVP-PGDPEALADAIER 323 (355)
T ss_pred HHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEEeC-CCCHHHHHHHHHH
Confidence 7778888 555 233568999999999999876532 23344 5534777775 3488999999999
Q ss_pred HHhH
Q 011832 429 LMVE 432 (476)
Q Consensus 429 ~l~~ 432 (476)
++++
T Consensus 324 ~~~~ 327 (355)
T cd03799 324 LLDD 327 (355)
T ss_pred HHhC
Confidence 9985
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.74 E-value=4.8e-05 Score=74.53 Aligned_cols=138 Identities=17% Similarity=0.114 Sum_probs=78.1
Q ss_pred CCeEEEEEeccccc-cCHHHHHHHHHHHHhc--CCceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccCh-HHHhh
Q 011832 288 VRSVLYVSFGSITL-LKREQLIEFWHGLVDS--KQRFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQ-EEVLA 361 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq-~~lL~ 361 (476)
++..+++..|.... -..+.+-.++..+... +.+++++-.++........+..... .+.++|.+.+|.+. .++|.
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~ 262 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA 262 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH
Confidence 34466777787652 2334444444444442 2344444332211100011111111 24578888888554 46888
Q ss_pred ccccccccc--ccC-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 362 HQAVAGFLT--HSG-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 362 ~~~~~~~I~--HGG-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
.+++-.+-+ +-| .+++.||+++|+|+|+.-.. .+...+ ...+.|..++ .-+.+.+.++|.+++.
T Consensus 263 ~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i-~~~~~g~~~~-~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 263 LADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETV-RPGETGLLVP-PGDAEALAQALDQILS 329 (355)
T ss_pred hCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHH-hCCCceEEeC-CCCHHHHHHHHHHHHh
Confidence 899833323 223 35999999999999986543 344455 5534777775 4588999999976665
No 76
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.69 E-value=9.5e-05 Score=72.06 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=76.9
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCchhhHHHHH---HhhcCCceEeeccCh-HHH
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGEGDALAELV---EGTKERGLLVSWVPQ-EEV 359 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~l~~~~---~~~~~nv~~~~~~pq-~~l 359 (476)
+..+++..|+... ......+++++..+ +.++++.-.+. .. .....+. ..+++++.+.+...+ .++
T Consensus 192 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~l~i~G~~~-~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 265 (365)
T cd03807 192 DTFLIGIVARLHP--QKDHATLLRAAALLLKKFPNARLLLVGDGP-DR---ANLELLALKELGLEDKVILLGERSDVPAL 265 (365)
T ss_pred CCeEEEEecccch--hcCHHHHHHHHHHHHHhCCCeEEEEecCCc-ch---hHHHHHHHHhcCCCceEEEccccccHHHH
Confidence 3466777887752 23344455555432 23444443222 11 1111111 134567776665543 468
Q ss_pred hhcccccccccccC----chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 360 LAHQAVAGFLTHSG----WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 360 L~~~~~~~~I~HGG----~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+..+++ +|..+. .+++.||+++|+|+|+.. ...+...+ ++ .|..++ .-+.+++.++|.+++++
T Consensus 266 ~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~~-~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 266 LNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLVP-PGDPEALAEAIEALLAD 332 (365)
T ss_pred HHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEeC-CCCHHHHHHHHHHHHhC
Confidence 989988 775443 479999999999999854 34455555 44 555554 24789999999999985
No 77
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.68 E-value=1.6e-05 Score=78.05 Aligned_cols=136 Identities=12% Similarity=0.164 Sum_probs=81.3
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccCh-HHHh
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQ-EEVL 360 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq-~~lL 360 (476)
+..+++..|+.. +......+++++..+ +.++++.-.+.. .+.+..... ...+|+.+.++..+ .++|
T Consensus 187 ~~~~~l~~g~~~--~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 260 (360)
T cd04951 187 DTFVILAVGRLV--EAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL----RATLERLIKALGLSNRVKLLGLRDDIAAYY 260 (360)
T ss_pred CCEEEEEEeeCc--hhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc----HHHHHHHHHhcCCCCcEEEecccccHHHHH
Confidence 346777788764 233344455555432 345555533221 112222222 24567888887755 4689
Q ss_pred hcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh-HhHH
Q 011832 361 AHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV-ERKE 435 (476)
Q Consensus 361 ~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~-~~~~ 435 (476)
..+++ +|.- |..+++.||+++|+|+|+. |...+...+ +. .|..+. .-+.+++++++.++++ + +
T Consensus 261 ~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~-~~~~~~~~~~i~~ll~~~--~ 328 (360)
T cd04951 261 NAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVP-ISDPEALANKIDEILKMS--G 328 (360)
T ss_pred Hhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeC-CCCHHHHHHHHHHHHhCC--H
Confidence 89988 5443 2256899999999999974 445555666 54 333333 3588999999999985 3 3
Q ss_pred HHHHHHH
Q 011832 436 EFMRAAD 442 (476)
Q Consensus 436 ~y~~~a~ 442 (476)
.+++...
T Consensus 329 ~~~~~~~ 335 (360)
T cd04951 329 EERDIIG 335 (360)
T ss_pred HHHHHHH
Confidence 4544333
No 78
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.65 E-value=5e-05 Score=74.39 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=69.1
Q ss_pred hcCCceEee-ccChH---HHhhccccccccc----c--cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeec
Q 011832 344 TKERGLLVS-WVPQE---EVLAHQAVAGFLT----H--SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDM 413 (476)
Q Consensus 344 ~~~nv~~~~-~~pq~---~lL~~~~~~~~I~----H--GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~ 413 (476)
+.+|+.+.. |+|+. .++..+++ +|. - |..+++.||+++|+|+|+.+..+ ...+ ...+.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEE
Confidence 457888774 58864 57888887 552 2 34568999999999999987654 2334 344667666
Q ss_pred ccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011832 414 KDVCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLID 467 (476)
Q Consensus 414 ~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~ 467 (476)
+ .-+.+++.+++.+++++ +..++ ++++..++...+ -+-.+.++++++
T Consensus 317 ~-~~d~~~~~~~l~~l~~~--~~~~~---~~~~~~~~~~~~-~s~~~~~~~~~~ 363 (366)
T cd03822 317 P-PGDPAALAEAIRRLLAD--PELAQ---ALRARAREYARA-MSWERVAERYLR 363 (366)
T ss_pred c-CCCHHHHHHHHHHHHcC--hHHHH---HHHHHHHHHHhh-CCHHHHHHHHHH
Confidence 5 34689999999999985 33222 333333332223 444455555544
No 79
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.65 E-value=3e-05 Score=76.38 Aligned_cols=130 Identities=13% Similarity=0.183 Sum_probs=81.0
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhcCC--ceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccCh--H---HHhh
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDSKQ--RFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQ--E---EVLA 361 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq--~---~lL~ 361 (476)
.+++..|.........+..+++++..... ++++.-.++. .+.+..+.+ .++++|.+.+|+++ . +.+.
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~----~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~ 256 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD----FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK 256 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc----HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh
Confidence 55677777653234456667777776543 4443332221 123333322 35678999999854 2 2444
Q ss_pred ccccccccc--c--cCchhHHHHHhhCCceeccC-CcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 362 HQAVAGFLT--H--SGWNSTLESIVAGVPMICWP-YFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 362 ~~~~~~~I~--H--GG~~s~~eal~~GvP~l~iP-~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
.+++ +|. + |--.++.||+++|+|+|+.- ..+ ....+ +.-..|..++ .-+.++++++|.+++++
T Consensus 257 ~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~-~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 257 NVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYT-PGNIDEFVGKLNKVISG 324 (359)
T ss_pred cCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEEC-CCCHHHHHHHHHHHHhC
Confidence 5676 553 3 33569999999999999875 322 22334 5544677765 35999999999999996
No 80
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.64 E-value=2.1e-05 Score=76.01 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=88.0
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhcCCc-eEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhccccccc
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDSKQR-FLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGF 368 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~ 368 (476)
++|.+-.||-..--...+-.++++...+..+ ..+.+..... .+.+....++. ..+.+.+ .-.+++..+|+ .
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~---~~~i~~~~~~~-~~~~~~~--~~~~~m~~aDl--a 239 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK---GKDLKEIYGDI-SEFEISY--DTHKALLEAEF--A 239 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc---HHHHHHHHhcC-CCcEEec--cHHHHHHhhhH--H
Confidence 5899999988532224455455666554332 2223222210 11222211111 1233332 34579999998 9
Q ss_pred ccccCchhHHHHHhhCCceeccCCcc--cchhhHHHHHh---hhcceeec--------------ccccCHHHHHHHHHHH
Q 011832 369 LTHSGWNSTLESIVAGVPMICWPYFA--DQQINSRFVSE---VWNLGLDM--------------KDVCDRNVVEKMVNDL 429 (476)
Q Consensus 369 I~HGG~~s~~eal~~GvP~l~iP~~~--DQ~~na~~v~~---~~G~G~~~--------------~~~~~~~~l~~~i~~~ 429 (476)
|+-+|-.|+ |++.+|+|+++ ++.. =|+.||+++ . ..|+.-.+ ..++|++.|.+++.+.
T Consensus 240 l~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~ 316 (347)
T PRK14089 240 FICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEM 316 (347)
T ss_pred HhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHH
Confidence 999999999 99999999999 6643 488899999 5 44544333 2368899999998772
Q ss_pred HhHhHHHHHHHHHHHHHHH
Q 011832 430 MVERKEEFMRAADRMATMA 448 (476)
Q Consensus 430 l~~~~~~y~~~a~~~~~~~ 448 (476)
.. ...++...++.+++
T Consensus 317 -~~--~~~~~~~~~l~~~l 332 (347)
T PRK14089 317 -DR--EKFFKKSKELREYL 332 (347)
T ss_pred -HH--HHHHHHHHHHHHHh
Confidence 22 35555555555553
No 81
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.62 E-value=1.6e-05 Score=76.92 Aligned_cols=131 Identities=15% Similarity=0.217 Sum_probs=77.3
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhcC-----CceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccCh-HHH
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDSK-----QRFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQ-EEV 359 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq-~~l 359 (476)
.+..+++..|+.. .......++++++.+. .++++. +.+.. ...+....+ ...+++.+.++.+. .++
T Consensus 187 ~~~~~i~~~g~~~--~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (353)
T cd03811 187 PDGPVILAVGRLS--PQKGFDTLIRAFALLRKEGPDARLVIL-GDGPL---REELEALAKELGLADRVHFLGFQSNPYPY 260 (353)
T ss_pred CCceEEEEEecch--hhcChHHHHHHHHHhhhcCCCceEEEE-cCCcc---HHHHHHHHHhcCCCccEEEecccCCHHHH
Confidence 3446778888775 2333444556655443 343433 32211 111222222 23568888888775 468
Q ss_pred hhcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHH---HHHHHHHHhH
Q 011832 360 LAHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVV---EKMVNDLMVE 432 (476)
Q Consensus 360 L~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l---~~~i~~~l~~ 432 (476)
+..+++ +|.- |..+++.||+++|+|+|+.... .....+ ++.+.|...+ .-+.+.+ .+++.+++++
T Consensus 261 ~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~-~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 261 LKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVP-VGDEAALAAAALALLDLLLD 332 (353)
T ss_pred HHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEEC-CCCHHHHHHHHHHHHhccCC
Confidence 989888 5532 3356899999999999986443 455566 6656787776 3466676 4445555443
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.62 E-value=3.5e-05 Score=75.65 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=85.1
Q ss_pred EEEeccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCCCchhhH-HHHH--HhhcCCceEeeccChHH---Hhhccc
Q 011832 293 YVSFGSITLLKREQLIEFWHGLVDSK--QRFLWVIRPDSVIGEGDAL-AELV--EGTKERGLLVSWVPQEE---VLAHQA 364 (476)
Q Consensus 293 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~l-~~~~--~~~~~nv~~~~~~pq~~---lL~~~~ 364 (476)
++..|+.. +......+++++..+. .++++.-.++... .+ ..+. ....++|.+.+++|+.+ ++..++
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~----~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNADHNT----PYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCCCcc----hHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 45678775 3344556777777664 3444443321111 12 2221 23567899999999875 566667
Q ss_pred ccccccccCc-----hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHH
Q 011832 365 VAGFLTHSGW-----NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMR 439 (476)
Q Consensus 365 ~~~~I~HGG~-----~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~ 439 (476)
+ ++.++-. +++.||+++|+|+|+....+ +...+ +. .|...+. .+.++++|.+++++ +...
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~---~~~l~~~i~~l~~~--~~~~- 334 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKV---GDDLASLLEELEAD--PEEV- 334 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecC---chHHHHHHHHHHhC--HHHH-
Confidence 6 5444322 47999999999999875542 22222 32 2333331 11299999999986 3222
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 440 AADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 440 ~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
.++++..++.+.+.-+-...++++++-
T Consensus 335 --~~~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 335 --SAMAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444443333344555556665553
No 83
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.62 E-value=0.00029 Score=74.67 Aligned_cols=130 Identities=10% Similarity=0.147 Sum_probs=73.3
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhc---C--CceEEEECCCCCC--Cchh------hHHHHHHh--hcCCceEeecc-
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDS---K--QRFLWVIRPDSVI--GEGD------ALAELVEG--TKERGLLVSWV- 354 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~--~~~i~~~~~~~~~--~~~~------~l~~~~~~--~~~nv~~~~~~- 354 (476)
.++++.|-.. +...+..+++|+.+. . .+++.+.++.... .+.+ .+.++.++ +.++|.+.++.
T Consensus 551 piIl~VGRL~--~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~ 628 (784)
T TIGR02470 551 PIIFSMARLD--RVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQL 628 (784)
T ss_pred cEEEEEeCCC--ccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcC
Confidence 4566777665 334455667776543 2 3444443322110 0111 11222222 45778877764
Q ss_pred Ch---HHHhhc-c---ccccccc---ccCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHH
Q 011832 355 PQ---EEVLAH-Q---AVAGFLT---HSGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVE 423 (476)
Q Consensus 355 pq---~~lL~~-~---~~~~~I~---HGG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~ 423 (476)
+. .+++.. + ++ ||. .=|+ .++.||+++|+|+|+.-.. .....+ +.-.-|..++ .-+.+.++
T Consensus 629 ~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV-~dg~tGfLVd-p~D~eaLA 700 (784)
T TIGR02470 629 NRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEII-QDGVSGFHID-PYHGEEAA 700 (784)
T ss_pred CcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEeC-CCCHHHHH
Confidence 32 245542 2 34 663 2333 4899999999999986543 345556 5534687776 34788899
Q ss_pred HHHHHHH
Q 011832 424 KMVNDLM 430 (476)
Q Consensus 424 ~~i~~~l 430 (476)
++|.+++
T Consensus 701 ~aL~~ll 707 (784)
T TIGR02470 701 EKIVDFF 707 (784)
T ss_pred HHHHHHH
Confidence 9998876
No 84
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.61 E-value=2.4e-05 Score=76.97 Aligned_cols=128 Identities=19% Similarity=0.217 Sum_probs=79.5
Q ss_pred CeEEEEEecccc---ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCc---hhhHHHHHHhhcCCceEeeccCh---HHH
Q 011832 289 RSVLYVSFGSIT---LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGE---GDALAELVEGTKERGLLVSWVPQ---EEV 359 (476)
Q Consensus 289 ~~~I~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~---~~~l~~~~~~~~~nv~~~~~~pq---~~l 359 (476)
++.|+|++=-.. ....+.+..+++++...+.++++.+.... ++. .+.+..+.++ .+|+.+.+-++. ..+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~~~i~~~i~~~~~~-~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGSRIINEAIEEYVNE-HPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCchHHHHHHHHHhcC-CCCEEEECCCChHHHHHH
Confidence 457777774332 23457788899999887766666654322 111 1122333221 467888765554 458
Q ss_pred hhcccccccccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceee-cccccCHHHHHHHHHHHHh
Q 011832 360 LAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLD-MKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 360 L~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~-~~~~~~~~~l~~~i~~~l~ 431 (476)
+.++++ +|+-++.+- .||.+.|+|+|.+- +.+ .-+ + .|..+. + ..+.++|.+++.++++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~-~g~nvl~v--g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L-RADSVIDV--DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h-hcCeEEEe--CCCHHHHHHHHHHHhC
Confidence 888888 998775554 99999999999774 211 111 2 243322 3 4688999999999655
No 85
>PLN02949 transferase, transferring glycosyl groups
Probab=98.59 E-value=0.00026 Score=71.82 Aligned_cols=113 Identities=14% Similarity=0.077 Sum_probs=68.4
Q ss_pred hcCCceEeeccChHH---Hhhccccccccc---ccCch-hHHHHHhhCCceeccCCcccchhhHHHHHhh-hc-ceeecc
Q 011832 344 TKERGLLVSWVPQEE---VLAHQAVAGFLT---HSGWN-STLESIVAGVPMICWPYFADQQINSRFVSEV-WN-LGLDMK 414 (476)
Q Consensus 344 ~~~nv~~~~~~pq~~---lL~~~~~~~~I~---HGG~~-s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~-~G-~G~~~~ 414 (476)
+.++|.+..++|+.+ +|..+++ +|+ +-|+| ++.||+++|+|+|+....+--. ..+.+. .| .|...+
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~~ 407 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLAT 407 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccCC
Confidence 568899999998765 6778887 663 23444 7999999999999986543100 011010 02 243332
Q ss_pred cccCHHHHHHHHHHHHh-H--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 011832 415 DVCDRNVVEKMVNDLMV-E--RKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKMM 472 (476)
Q Consensus 415 ~~~~~~~l~~~i~~~l~-~--~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~ 472 (476)
+.++++++|.++++ + ....+.+++++..+. -+..+..+++.+.+.+.
T Consensus 408 ---~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~~l 457 (463)
T PLN02949 408 ---TVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIRPI 457 (463)
T ss_pred ---CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHHHH
Confidence 88999999999997 3 111233344333222 45556666666655543
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.58 E-value=6.5e-05 Score=75.27 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=72.4
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhc----C-CceEEEECCCCCCCchhhHHHHHHhhcCCc-eEeeccChHHHhhcccc
Q 011832 292 LYVSFGSITLLKREQLIEFWHGLVDS----K-QRFLWVIRPDSVIGEGDALAELVEGTKERG-LLVSWVPQEEVLAHQAV 365 (476)
Q Consensus 292 I~vs~Gs~~~~~~~~~~~~~~a~~~~----~-~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv-~~~~~~pq~~lL~~~~~ 365 (476)
+.+..|-.. ....+..+++++..+ + .+ +..++.+.. .+.+.....+++-++ .+..+.+..+++...|+
T Consensus 230 ~~l~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~-l~ivGdGp~---~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~Dv 303 (462)
T PLN02846 230 GAYYIGKMV--WSKGYKELLKLLHKHQKELSGLE-VDLYGSGED---SDEVKAAAEKLELDVRVYPGRDHADPLFHDYKV 303 (462)
T ss_pred EEEEEecCc--ccCCHHHHHHHHHHHHhhCCCeE-EEEECCCcc---HHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCE
Confidence 344456554 344556666666542 2 23 334443311 112322222232122 24566666779998888
Q ss_pred cccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 366 AGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 366 ~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
||.- |-..++.||+++|+|+|+.-..+ | ..+ .+-+-|...+ +.+.+.+++.++|++
T Consensus 304 --Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~~---~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 304 --FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTYD---DGKGFVRATLKALAE 363 (462)
T ss_pred --EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEecC---CHHHHHHHHHHHHcc
Confidence 8876 34568999999999999986443 2 333 3323444442 688999999999984
No 87
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.51 E-value=0.00043 Score=68.81 Aligned_cols=167 Identities=15% Similarity=0.148 Sum_probs=92.0
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhc--CCceEEEECCCCCCCchhhHHHHHHhhc---CCceE-eeccChH---HHh
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDS--KQRFLWVIRPDSVIGEGDALAELVEGTK---ERGLL-VSWVPQE---EVL 360 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~~~~---~nv~~-~~~~pq~---~lL 360 (476)
..+++..|... +...+..++++++.+ +.++++..+++........+......+. +++.+ ..++++. +++
T Consensus 201 ~~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 278 (388)
T TIGR02149 201 RPYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELL 278 (388)
T ss_pred ceEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHH
Confidence 35666678765 334456677777665 3455555443321110111211111222 24554 4677764 478
Q ss_pred hcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc-ccC----HHHHHHHHHHHHh
Q 011832 361 AHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD-VCD----RNVVEKMVNDLMV 431 (476)
Q Consensus 361 ~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~-~~~----~~~l~~~i~~~l~ 431 (476)
..+|+ +|.= |...++.||+++|+|+|+.... .....+ +.-+.|..++. ..+ .+.+.++|.++++
T Consensus 279 ~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 279 SNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred HhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 88898 6542 2235779999999999987543 355555 55457877763 221 2889999999988
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 432 ERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 432 ~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
+ +.-+ +++++..++.+.+.-+....++++++.++
T Consensus 352 ~--~~~~---~~~~~~a~~~~~~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 352 D--PELA---KKMGIAGRKRAEEEFSWGSIAKKTVEMYR 385 (388)
T ss_pred C--HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5 3222 22333322222223455556666665554
No 88
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.50 E-value=0.00029 Score=70.53 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=96.9
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhc---CC--ceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccChHH---H
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDS---KQ--RFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQEE---V 359 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~--~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq~~---l 359 (476)
+..+++.|... +...+..++++++.+ +. ++++. +.+.. .+.+..+.. .+.+++.+.+|+|+.+ +
T Consensus 222 ~~~il~vGrl~--~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~G~~---~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~ 295 (406)
T PRK15427 222 PLEIISVARLT--EKKGLHVAIEACRQLKEQGVAFRYRIL-GIGPW---ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAM 295 (406)
T ss_pred CeEEEEEeCcc--hhcCHHHHHHHHHHHHhhCCCEEEEEE-ECchh---HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHH
Confidence 35566677775 233444555665443 22 33333 32211 112322222 2457899999999865 7
Q ss_pred hhccccccccc--c-------cCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHH
Q 011832 360 LAHQAVAGFLT--H-------SGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDL 429 (476)
Q Consensus 360 L~~~~~~~~I~--H-------GG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~ 429 (476)
+..+++ ||. + -|. .++.||+++|+|+|+....+ ....+ +.-..|..++ .-+.++++++|.++
T Consensus 296 l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~lv~-~~d~~~la~ai~~l 367 (406)
T PRK15427 296 LDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGWLVP-ENDAQALAQRLAAF 367 (406)
T ss_pred HHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceEEeC-CCCHHHHHHHHHHH
Confidence 888888 553 2 344 57899999999999975533 33444 5534677765 35899999999999
Q ss_pred Hh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 430 MV-ERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 430 l~-~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
++ | +..+ +++++..++.+.+.-+.....+++.+.+.
T Consensus 368 ~~~d--~~~~---~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 368 SQLD--TDEL---APVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred HhCC--HHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 98 6 4322 33344444333344555666666666554
No 89
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.49 E-value=1.9e-06 Score=83.79 Aligned_cols=256 Identities=16% Similarity=0.177 Sum_probs=129.3
Q ss_pred hHHHHHHHhcCCCCceEEE--ECCCcc-hHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCCcCCccccccc
Q 011832 98 RPLLKQMLIDTSPPVSCII--GDACME-FVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKAYDEDMDRLI 174 (476)
Q Consensus 98 ~~~l~~ll~~~~~~~DlvI--~D~~~~-~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 174 (476)
-..+.+.+... +||+|| .|.+.. +++.+|..++||++.+..+.-.. . ...|
T Consensus 56 ~~~~~~~~~~~--~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~--------d----~~~g------------ 109 (346)
T PF02350_consen 56 IIELADVLERE--KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSG--------D----RTEG------------ 109 (346)
T ss_dssp HHHHHHHHHHH--T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-------------TTSS------------
T ss_pred HHHHHHHHHhc--CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCcc--------c----cCCC------------
Confidence 44577788877 889877 466655 67889999999999985421000 0 0000
Q ss_pred cccCCCCcccccCCCCCccccCCCCchHHHHHHHHhhcCCCCcEEEEcchhhcchHHHHHHHhhC-C-CeeeeCCCcccc
Q 011832 175 TKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNATQQSPRAHALILNTFEDLEEPILSHIRTKC-P-KVYTIGPLHLQL 252 (476)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~-p-~~~~vG~~~~~~ 252 (476)
.-+...++... .-+++.++.+...-+.-. +.-. + +++.||....+.
T Consensus 110 -----------------------~~de~~R~~i~-----~la~lhf~~t~~~~~~L~----~~G~~~~rI~~vG~~~~D~ 157 (346)
T PF02350_consen 110 -----------------------MPDEINRHAID-----KLAHLHFAPTEEARERLL----QEGEPPERIFVVGNPGIDA 157 (346)
T ss_dssp -----------------------TTHHHHHHHHH-----HH-SEEEESSHHHHHHHH----HTT--GGGEEE---HHHHH
T ss_pred -----------------------Cchhhhhhhhh-----hhhhhhccCCHHHHHHHH----hcCCCCCeEEEEChHHHHH
Confidence 01111222211 234566666654432221 2111 2 678888766543
Q ss_pred cccccccccccccccccCCccccchhh--hhhhcCCCCCeEEEEEeccccccC-H---HHHHHHHHHHHhc-CCceEEEE
Q 011832 253 KTRFASNMISSSSQKSLNSLWEVDRSC--IEWLGKQPVRSVLYVSFGSITLLK-R---EQLIEFWHGLVDS-KQRFLWVI 325 (476)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~I~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~ 325 (476)
-....+. ...+. .+++.. .+++.|++++=...... + ..+..++.++.+. +.++||.+
T Consensus 158 l~~~~~~---------------~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~ 221 (346)
T PF02350_consen 158 LLQNKEE---------------IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPL 221 (346)
T ss_dssp HHHHHHT---------------TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE-
T ss_pred HHHhHHH---------------HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 2110000 01111 122222 46678999884444444 3 4455566666666 66889998
Q ss_pred CCCCCCCchhhHHHHHHhhcCCceEeeccChH---HHhhcccccccccccCchhHH-HHHhhCCceeccCCcccchhhHH
Q 011832 326 RPDSVIGEGDALAELVEGTKERGLLVSWVPQE---EVLAHQAVAGFLTHSGWNSTL-ESIVAGVPMICWPYFADQQINSR 401 (476)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~---~lL~~~~~~~~I~HGG~~s~~-eal~~GvP~l~iP~~~DQ~~na~ 401 (476)
.+.+.. ...+.+..... +|+.+.+-+++. .+|.++++ +|+-.| ++. ||.+.|+|+|.+=..++.+ .
T Consensus 222 hn~p~~--~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRq---e 291 (346)
T PF02350_consen 222 HNNPRG--SDIIIEKLKKY-DNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQ---E 291 (346)
T ss_dssp -S-HHH--HHHHHHHHTT--TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-H---H
T ss_pred cCCchH--HHHHHHHhccc-CCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCH---H
Confidence 744211 11222111234 589888766654 58888888 999999 566 9999999999992222222 2
Q ss_pred HHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 011832 402 FVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAADR 443 (476)
Q Consensus 402 ~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~ 443 (476)
-+ + .|..+.+. .+.++|.+++.+++++ +.+.++...
T Consensus 292 ~r-~-~~~nvlv~--~~~~~I~~ai~~~l~~--~~~~~~~~~ 327 (346)
T PF02350_consen 292 GR-E-RGSNVLVG--TDPEAIIQAIEKALSD--KDFYRKLKN 327 (346)
T ss_dssp HH-H-TTSEEEET--SSHHHHHHHHHHHHH---HHHHHHHHC
T ss_pred HH-h-hcceEEeC--CCHHHHHHHHHHHHhC--hHHHHhhcc
Confidence 22 2 25555543 7999999999999985 344444433
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.48 E-value=0.00059 Score=67.51 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=53.9
Q ss_pred CCceEe-eccChHH---Hhhccccccccc-c-----cC-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecc
Q 011832 346 ERGLLV-SWVPQEE---VLAHQAVAGFLT-H-----SG-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMK 414 (476)
Q Consensus 346 ~nv~~~-~~~pq~~---lL~~~~~~~~I~-H-----GG-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~ 414 (476)
+|+.+. .|+|+.+ +|+.+|+ +|. + -| -+++.||+++|+|+|+.... .+...+ +.-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEEC
Confidence 456655 4788765 5889998 663 1 12 34799999999999997532 255556 6656898876
Q ss_pred cccCHHHHHHHHHHHH
Q 011832 415 DVCDRNVVEKMVNDLM 430 (476)
Q Consensus 415 ~~~~~~~l~~~i~~~l 430 (476)
+.++++++|.++|
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 5889999998875
No 91
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.47 E-value=0.00062 Score=68.50 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=55.9
Q ss_pred hcCCceEeeccChHH---Hhhcccccccccc---cCc-hhHHHHHhhCCceeccCCcccchhhHHHHHh---hhcceeec
Q 011832 344 TKERGLLVSWVPQEE---VLAHQAVAGFLTH---SGW-NSTLESIVAGVPMICWPYFADQQINSRFVSE---VWNLGLDM 413 (476)
Q Consensus 344 ~~~nv~~~~~~pq~~---lL~~~~~~~~I~H---GG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~---~~G~G~~~ 413 (476)
+.++|.+.+++|+.+ +|..+++ +|+- -|+ .++.||+++|+|+|+.-..+.- ...+ + .-..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe
Confidence 467899999998764 7888887 5532 222 3889999999999986543311 1112 3 33467665
Q ss_pred ccccCHHHHHHHHHHHHhH
Q 011832 414 KDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 414 ~~~~~~~~l~~~i~~~l~~ 432 (476)
. +.++++++|.+++++
T Consensus 377 ~---d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 S---TAEEYAEAIEKILSL 392 (419)
T ss_pred C---CHHHHHHHHHHHHhC
Confidence 3 899999999999983
No 92
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=0.0005 Score=66.42 Aligned_cols=306 Identities=14% Similarity=0.129 Sum_probs=175.2
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEe-CCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 11 LIFPLPCQSHMNSMLKLAEIFGLA--GLKVTFLN-SKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 11 l~~~~~~~gH~~p~l~La~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
+-+=--+.|-++-..+|.++|.++ ++.+++-+ ++...+.+.+..+ +.+.+.-+|-..
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--------~~v~h~YlP~D~------------ 111 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--------DSVIHQYLPLDL------------ 111 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--------CCeEEEecCcCc------------
Confidence 334445779999999999999999 88887776 4333444433332 113333333111
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc--hHHHHHHHcCCCeEEEecCchHHHHHHHhhhHHHhhCCCCCCc
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME--FVVDVATELEIPVIHFRAISACSFWAYFSIPEMIQAGELPMKA 165 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~--~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 165 (476)
...+..+++.. +||++|.-.... ..+.-++..|+|.+.+..= . +..
T Consensus 112 ----------~~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------L------S~r- 159 (419)
T COG1519 112 ----------PIAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------L------SDR- 159 (419)
T ss_pred ----------hHHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------e------chh-
Confidence 12245566666 788877544444 4455678899999998431 0 000
Q ss_pred CCccccccccccCCCCcccccCCCCCccccCCCCchHHHHHHHH-hhcCCCCcEEEEcchhhcchHHHHHHHhhC-CCee
Q 011832 166 YDEDMDRLITKVPGMETFLRFRDLPSFCRVSDVTDRDLQVLKNA-TQQSPRAHALILNTFEDLEEPILSHIRTKC-PKVY 243 (476)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~l~~~~l~~~~~~~-p~~~ 243 (476)
-.+++ ...... .....+.++++..|..+-+.- +... +++.
T Consensus 160 ----------S~~~y-----------------------~k~~~~~~~~~~~i~li~aQse~D~~Rf-----~~LGa~~v~ 201 (419)
T COG1519 160 ----------SFARY-----------------------AKLKFLARLLFKNIDLILAQSEEDAQRF-----RSLGAKPVV 201 (419)
T ss_pred ----------hhHHH-----------------------HHHHHHHHHHHHhcceeeecCHHHHHHH-----HhcCCcceE
Confidence 00000 000011 122356677888886554333 3333 3577
Q ss_pred eeCCCcccccccccccccccccccccCCccccchhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcC--Cce
Q 011832 244 TIGPLHLQLKTRFASNMISSSSQKSLNSLWEVDRSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSK--QRF 321 (476)
Q Consensus 244 ~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~ 321 (476)
..|.+-.+....+ . .+ ..-+.+...+... ..+.|..+|+. ...+.+-....++.+.. ...
T Consensus 202 v~GNlKfd~~~~~-~------~~-------~~~~~~r~~l~~~---r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~ll 263 (419)
T COG1519 202 VTGNLKFDIEPPP-Q------LA-------AELAALRRQLGGH---RPVWVAASTHE-GEEEIILDAHQALKKQFPNLLL 263 (419)
T ss_pred EecceeecCCCCh-h------hH-------HHHHHHHHhcCCC---CceEEEecCCC-chHHHHHHHHHHHHhhCCCceE
Confidence 7887776533110 0 00 0012233344331 24667667753 33444444555554432 356
Q ss_pred EEEECCCCCCCchhhHHHHHHh---------------hcCCceEeeccChH-HHhhcccc----cccccccCchhHHHHH
Q 011832 322 LWVIRPDSVIGEGDALAELVEG---------------TKERGLLVSWVPQE-EVLAHQAV----AGFLTHSGWNSTLESI 381 (476)
Q Consensus 322 i~~~~~~~~~~~~~~l~~~~~~---------------~~~nv~~~~~~pq~-~lL~~~~~----~~~I~HGG~~s~~eal 381 (476)
||+=+.++..+.- +++..+ ...+|.+.+-+--+ .+++-+++ +-++.+||+| ..|++
T Consensus 264 IlVPRHpERf~~v---~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa 339 (419)
T COG1519 264 ILVPRHPERFKAV---ENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPA 339 (419)
T ss_pred EEecCChhhHHHH---HHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHH
Confidence 6765544222111 111110 11256666665433 35555554 3356799998 68999
Q ss_pred hhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 382 VAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 382 ~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++|+|++.=|+..-|.+-++++ ++.|.|+.++ +++.|.+++..+++|
T Consensus 340 ~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~---~~~~l~~~v~~l~~~ 386 (419)
T COG1519 340 AFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVE---DADLLAKAVELLLAD 386 (419)
T ss_pred HcCCCEEeCCccccHHHHHHHH-HhcCCeEEEC---CHHHHHHHHHHhcCC
Confidence 9999999999999999999999 7889999998 388899999888885
No 93
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.44 E-value=8.3e-05 Score=72.82 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=58.9
Q ss_pred hcCCceEeeccChH---HHhhcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccc
Q 011832 344 TKERGLLVSWVPQE---EVLAHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDV 416 (476)
Q Consensus 344 ~~~nv~~~~~~pq~---~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~ 416 (476)
.++|+.+.+++|+. ++|..+++ +|.- |..+++.||+++|+|+|+....+ ....+ .+ .|..+. .
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~~--~~~~~~-~ 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-GD--AALYFD-P 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-cC--ceeeeC-C
Confidence 56889999999876 47888887 4432 33558999999999999865422 22223 32 233343 2
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHH
Q 011832 417 CDRNVVEKMVNDLMVERKEEFMRAAD 442 (476)
Q Consensus 417 ~~~~~l~~~i~~~l~~~~~~y~~~a~ 442 (476)
-+.+++.++|.++++| +..+.+..
T Consensus 321 ~~~~~~~~~i~~l~~~--~~~~~~~~ 344 (365)
T cd03809 321 LDPEALAAAIERLLED--PALREELR 344 (365)
T ss_pred CCHHHHHHHHHHHhcC--HHHHHHHH
Confidence 4789999999999886 45444433
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.43 E-value=0.00051 Score=70.21 Aligned_cols=135 Identities=12% Similarity=0.094 Sum_probs=78.3
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhc---CCceEEEECCCCCCCchhhHHHHHHhhcCCceE-eeccCh--HHHhhc
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDS---KQRFLWVIRPDSVIGEGDALAELVEGTKERGLL-VSWVPQ--EEVLAH 362 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~-~~~~pq--~~lL~~ 362 (476)
+..+++..|... +...+..+++++..+ +.++++.-.++. .....+..+.++.+.++.+ ..|-.. ..+++.
T Consensus 281 ~~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lvivG~g~~--~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~ 356 (466)
T PRK00654 281 DAPLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLLGTGDP--ELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG 356 (466)
T ss_pred CCcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEEecCcH--HHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh
Confidence 345677778775 233344455555432 556666533220 0112334444556677654 455322 257888
Q ss_pred cccccccc---ccCch-hHHHHHhhCCceeccCCcc--cchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 363 QAVAGFLT---HSGWN-STLESIVAGVPMICWPYFA--DQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 363 ~~~~~~I~---HGG~~-s~~eal~~GvP~l~iP~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
+++ ||. +-|+| +.+||+++|+|.|+.-..+ |.-.+...- ..-+.|..++ .-+++.|.++|.++++
T Consensus 357 aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~-~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 357 ADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFD-DFNAEDLLRALRRALE 427 (466)
T ss_pred CCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeC-CCCHHHHHHHHHHHHH
Confidence 998 664 34555 8889999999999865432 322111111 1126777776 3578999999999987
No 95
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.43 E-value=0.00033 Score=68.60 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=80.9
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCchhhHHHHH--HhhcCCceEeeccCh-HHHh
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGEGDALAELV--EGTKERGLLVSWVPQ-EEVL 360 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~l~~~~--~~~~~nv~~~~~~pq-~~lL 360 (476)
+..+++..|... +...+..+++++..+ +.++++.-.++ . ...+.... ..+++++.+.++..+ .+++
T Consensus 191 ~~~~i~~vGr~~--~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~-~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 264 (358)
T cd03812 191 DKFVIGHVGRFS--EQKNHEFLIEIFAELLKKNPNAKLLLVGDGE-L---EEEIKKKVKELGLEDKVIFLGVRNDVPELL 264 (358)
T ss_pred CCEEEEEEeccc--cccChHHHHHHHHHHHHhCCCeEEEEEeCCc-h---HHHHHHHHHhcCCCCcEEEecccCCHHHHH
Confidence 346677777765 223333444444433 23444443222 1 11222221 234678888887544 5689
Q ss_pred hcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHH
Q 011832 361 AHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEE 436 (476)
Q Consensus 361 ~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~ 436 (476)
..+++ +|.- |-..++.||+++|+|+|+....+ ....+ +. +.|.... .-+.++++++|.+++++ +.
T Consensus 265 ~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~-~~~~~~~a~~i~~l~~~--~~ 333 (358)
T cd03812 265 QAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL-DESPEIWAEEILKLKSE--DR 333 (358)
T ss_pred HhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC-CCCHHHHHHHHHHHHhC--cc
Confidence 88888 5542 44679999999999999875544 33444 55 5555443 34579999999999996 45
Q ss_pred HHHHH
Q 011832 437 FMRAA 441 (476)
Q Consensus 437 y~~~a 441 (476)
.+++.
T Consensus 334 ~~~~~ 338 (358)
T cd03812 334 RERSS 338 (358)
T ss_pred hhhhh
Confidence 44433
No 96
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.41 E-value=0.00045 Score=68.40 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=89.3
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHh---c--CCceEEEECCCCCCCchhhH-HHHH--HhhcCCceEeecc--ChH--
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVD---S--KQRFLWVIRPDSVIGEGDAL-AELV--EGTKERGLLVSWV--PQE-- 357 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~---~--~~~~i~~~~~~~~~~~~~~l-~~~~--~~~~~nv~~~~~~--pq~-- 357 (476)
..+++..|.+.. ......++++++. . +.++++.-+++......... ..+. ....+++.+..+. ++.
T Consensus 190 ~~~i~~vgrl~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 267 (372)
T cd03792 190 RPYITQVSRFDP--WKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEV 267 (372)
T ss_pred CcEEEEEecccc--ccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHH
Confidence 356677787752 2223334444332 2 23555544332211111111 2222 1245678888776 433
Q ss_pred -HHhhccccccccccc---C-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 358 -EVLAHQAVAGFLTHS---G-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 358 -~lL~~~~~~~~I~HG---G-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++++.+++ |+.-. | -.++.||+++|+|+|+....+ ....+ +.-+.|...+ +.+.++++|.+++++
T Consensus 268 ~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~---~~~~~a~~i~~ll~~ 337 (372)
T cd03792 268 NALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD---TVEEAAVRILYLLRD 337 (372)
T ss_pred HHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC---CcHHHHHHHHHHHcC
Confidence 47888888 76432 3 349999999999999875432 23344 5435566554 467788899999985
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 433 RKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 433 ~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
++.++ ++++..++.+.+.-+-...++++++.+.
T Consensus 338 --~~~~~---~~~~~a~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 338 --PELRR---KMGANAREHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred --HHHHH---HHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 34333 2222222222234555666677666554
No 97
>PLN00142 sucrose synthase
Probab=98.41 E-value=0.00029 Score=74.67 Aligned_cols=79 Identities=11% Similarity=0.171 Sum_probs=50.1
Q ss_pred hcCCceEee----ccChHHHhh----ccccccccc---ccCch-hHHHHHhhCCceeccCCcccchhhHHHHHhhhccee
Q 011832 344 TKERGLLVS----WVPQEEVLA----HQAVAGFLT---HSGWN-STLESIVAGVPMICWPYFADQQINSRFVSEVWNLGL 411 (476)
Q Consensus 344 ~~~nv~~~~----~~pq~~lL~----~~~~~~~I~---HGG~~-s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~ 411 (476)
+.++|.+.+ ..+..++.. .+++ ||. +-|+| ++.||+++|+|+|+.... .....| +.-..|.
T Consensus 640 L~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV-~dG~tG~ 712 (815)
T PLN00142 640 LKGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEII-VDGVSGF 712 (815)
T ss_pred CCCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEE
Confidence 346666654 334455554 2345 664 34555 899999999999986543 344555 5533687
Q ss_pred ecccccCHHHHHHHHHHHH
Q 011832 412 DMKDVCDRNVVEKMVNDLM 430 (476)
Q Consensus 412 ~~~~~~~~~~l~~~i~~~l 430 (476)
.++. -+.+.++++|.+++
T Consensus 713 LV~P-~D~eaLA~aI~~lL 730 (815)
T PLN00142 713 HIDP-YHGDEAANKIADFF 730 (815)
T ss_pred EeCC-CCHHHHHHHHHHHH
Confidence 7763 47788888877654
No 98
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.39 E-value=5.2e-05 Score=75.82 Aligned_cols=109 Identities=19% Similarity=0.115 Sum_probs=69.9
Q ss_pred cCCceEeeccChH-HHhhcccccccc--cc--cCch-hHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccC
Q 011832 345 KERGLLVSWVPQE-EVLAHQAVAGFL--TH--SGWN-STLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCD 418 (476)
Q Consensus 345 ~~nv~~~~~~pq~-~lL~~~~~~~~I--~H--GG~~-s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~ 418 (476)
.++|.+.+++++. .++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. . +..|.|..+. -+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~--~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA--AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC--CC
Confidence 4678899999864 58888998 55 32 4544 6999999999999998643321 1 2236676664 58
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 419 RNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 419 ~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
.++++++|.++++| +..+ +++++..++.+.+.-+-.+.++.+.+.
T Consensus 349 ~~~la~ai~~ll~~--~~~~---~~~~~~ar~~v~~~fsw~~~~~~~~~~ 393 (397)
T TIGR03087 349 PADFAAAILALLAN--PAER---EELGQAARRRVLQHYHWPRNLARLDAL 393 (397)
T ss_pred HHHHHHHHHHHHcC--HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999986 3322 223333333222334444445554433
No 99
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.38 E-value=0.00075 Score=69.16 Aligned_cols=165 Identities=10% Similarity=-0.009 Sum_probs=91.3
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHh---cCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH---HHhhcc
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVD---SKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE---EVLAHQ 363 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~---~lL~~~ 363 (476)
..+++..|.... ...+..+++++.. .+.++++.-.++ ....+.+..+..+.+.++.+....+.. .+++.+
T Consensus 291 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~--~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 366 (473)
T TIGR02095 291 VPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGD--PELEEALRELAERYPGNVRVIIGYDEALAHLIYAGA 366 (473)
T ss_pred CCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCC--HHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhC
Confidence 456677787762 2333445555443 345655553322 111123344445567777766555654 478888
Q ss_pred ccccccc---ccCch-hHHHHHhhCCceeccCCcccchhhHHHHHhhh------cceeecccccCHHHHHHHHHHHHhHh
Q 011832 364 AVAGFLT---HSGWN-STLESIVAGVPMICWPYFADQQINSRFVSEVW------NLGLDMKDVCDRNVVEKMVNDLMVER 433 (476)
Q Consensus 364 ~~~~~I~---HGG~~-s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~------G~G~~~~~~~~~~~l~~~i~~~l~~~ 433 (476)
++ ++. +-|+| +.+||+++|+|.|+-...+ ....+ +.. +.|..++ .-++++|+++|.++++..
T Consensus 367 Dv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~-~~d~~~la~~i~~~l~~~ 438 (473)
T TIGR02095 367 DF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFE-EYDPGALLAALSRALRLY 438 (473)
T ss_pred CE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeC-CCCHHHHHHHHHHHHHHH
Confidence 88 663 23444 7889999999999876533 12222 222 6777775 358899999999998720
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 434 KEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 434 ~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
..-.+..+++++. ++...-+-.+.++++++..+
T Consensus 439 -~~~~~~~~~~~~~---~~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 439 -RQDPSLWEALQKN---AMSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred -hcCHHHHHHHHHH---HhccCCCcHHHHHHHHHHHH
Confidence 0011222333332 23334555555666655443
No 100
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.28 E-value=3.3e-06 Score=68.58 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=78.7
Q ss_pred eEEEEEecccccc---CHHHHHHHHHHHHhcCC-ceEEEECCCCC-CCchhhHHHHHHhhcCC--ceEeeccCh-HHHhh
Q 011832 290 SVLYVSFGSITLL---KREQLIEFWHGLVDSKQ-RFLWVIRPDSV-IGEGDALAELVEGTKER--GLLVSWVPQ-EEVLA 361 (476)
Q Consensus 290 ~~I~vs~Gs~~~~---~~~~~~~~~~a~~~~~~-~~i~~~~~~~~-~~~~~~l~~~~~~~~~n--v~~~~~~pq-~~lL~ 361 (476)
..+||+-||.... +.-...++.+.+.+.|. +.|..++.+.. .++... +. +..+. +...+|-|- .+..+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~--~~--~k~~gl~id~y~f~psl~e~I~ 79 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPID--LI--RKNGGLTIDGYDFSPSLTEDIR 79 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHH--hh--cccCCeEEEEEecCccHHHHHh
Confidence 3799999998721 11223446777777776 77888876622 111111 10 11122 234577886 67887
Q ss_pred cccccccccccCchhHHHHHhhCCceeccCC----cccchhhHHHHHhhhcceeec
Q 011832 362 HQAVAGFLTHSGWNSTLESIVAGVPMICWPY----FADQQINSRFVSEVWNLGLDM 413 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~----~~DQ~~na~~v~~~~G~G~~~ 413 (476)
.+++ +|+|+|.||++|.|..|+|.++++- -.-|-.-|..+ ++.|.=...
T Consensus 80 ~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL-~~egyL~~C 132 (170)
T KOG3349|consen 80 SADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQL-AEEGYLYYC 132 (170)
T ss_pred hccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHH-HhcCcEEEe
Confidence 7888 9999999999999999999999994 44588899999 444654444
No 101
>PLN02316 synthase/transferase
Probab=98.25 E-value=0.003 Score=68.99 Aligned_cols=171 Identities=9% Similarity=0.049 Sum_probs=97.0
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhc---CCceEEEECCCCCCCchhhHHHHHHh----hcCCceEeeccChH---HHh
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDS---KQRFLWVIRPDSVIGEGDALAELVEG----TKERGLLVSWVPQE---EVL 360 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~l~~~~~~----~~~nv~~~~~~pq~---~lL 360 (476)
.|+...|-.. +...+..+++|+..+ +.+++..-.++. ......+..+..+ .+++|.+....+.. .++
T Consensus 841 plVg~VGRL~--~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd-~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iy 917 (1036)
T PLN02316 841 PLVGIITRLT--HQKGIHLIKHAIWRTLERNGQVVLLGSAPD-PRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIY 917 (1036)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHhhcCcEEEEEeCCCC-HHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHH
Confidence 4555566665 233445556665542 556655433221 1111223334342 35677766555553 588
Q ss_pred hcccccccccc---cCc-hhHHHHHhhCCceeccCCcc--cchhhH----HHH--HhhhcceeecccccCHHHHHHHHHH
Q 011832 361 AHQAVAGFLTH---SGW-NSTLESIVAGVPMICWPYFA--DQQINS----RFV--SEVWNLGLDMKDVCDRNVVEKMVND 428 (476)
Q Consensus 361 ~~~~~~~~I~H---GG~-~s~~eal~~GvP~l~iP~~~--DQ~~na----~~v--~~~~G~G~~~~~~~~~~~l~~~i~~ 428 (476)
+.+|+ |+.- =|+ .+.+||+++|+|.|+-...+ |.-... .+. ...-+-|...+ ..+++.|..+|.+
T Consensus 918 aaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~-~~d~~aLa~AL~r 994 (1036)
T PLN02316 918 AGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD-GADAAGVDYALNR 994 (1036)
T ss_pred HhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC-CCCHHHHHHHHHH
Confidence 88888 7742 233 48999999999888765432 222111 000 00014566665 4688999999999
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011832 429 LMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKM 471 (476)
Q Consensus 429 ~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 471 (476)
+|.. |.+....+++..++.+...-+-.+.+++.++-...
T Consensus 995 aL~~----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 995 AISA----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred HHhh----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 9973 45555666777776665566655666666555443
No 102
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.24 E-value=0.00095 Score=68.18 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=89.0
Q ss_pred hhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHH--hc--CCceEEEECCCCCCCchhhHHHHHHhhc-CCceEeeccC
Q 011832 281 EWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLV--DS--KQRFLWVIRPDSVIGEGDALAELVEGTK-ERGLLVSWVP 355 (476)
Q Consensus 281 ~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~--~~--~~~~i~~~~~~~~~~~~~~l~~~~~~~~-~nv~~~~~~p 355 (476)
+-+.-.+++++|-+-.||-.+-=...+..++++.+ .+ +.+++.....+. ..+.+....+..+ -.+.++.--.
T Consensus 405 ~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---~~~~i~~~~~~~~~~~~~ii~~~~ 481 (608)
T PRK01021 405 EQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---YDHLILEVLQQEGCLHSHIVPSQF 481 (608)
T ss_pred HHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---hHHHHHHHHhhcCCCCeEEecCcc
Confidence 33333345678999999875322344455666665 43 234544322210 0111222211111 0122221001
Q ss_pred hHHHhhcccccccccccCchhHHHHHhhCCceeccCC-cccchhhHHHHHh-----------hhcce---eec--ccccC
Q 011832 356 QEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPY-FADQQINSRFVSE-----------VWNLG---LDM--KDVCD 418 (476)
Q Consensus 356 q~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~-~~DQ~~na~~v~~-----------~~G~G---~~~--~~~~~ 418 (476)
..++++.|++ .+.-.| ..+.|+..+|+||+++=- ..=-+..|+++++ -+|=. ..+ .+++|
T Consensus 482 ~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t 558 (608)
T PRK01021 482 RYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ 558 (608)
T ss_pred hHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC
Confidence 2589999998 666665 457899999999998632 2123345566633 01111 111 12578
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011832 419 RNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDI 469 (476)
Q Consensus 419 ~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 469 (476)
++.|++++ ++|+| +.++++.++=-+.+++.+++|- -+.+|.+..+
T Consensus 559 pe~La~~l-~lL~d--~~~r~~~~~~l~~lr~~Lg~~~---~~~~~~~~~~ 603 (608)
T PRK01021 559 PEEVAAAL-DILKT--SQSKEKQKDACRDLYQAMNESA---STMKECLSLI 603 (608)
T ss_pred HHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHhcCCC---CCHHHHHHHH
Confidence 99999997 77775 3444444333333333344343 3444444433
No 103
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.23 E-value=0.0017 Score=64.20 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=91.3
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHh----c-----CCceEEEECCCCCCCchhhHHHHHHh--hcCCceEeeccCh
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVD----S-----KQRFLWVIRPDSVIGEGDALAELVEG--TKERGLLVSWVPQ 356 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~----~-----~~~~i~~~~~~~~~~~~~~l~~~~~~--~~~nv~~~~~~pq 356 (476)
++..++++.|.... ......+++++.. . +.+++|.-.+.. .+.+..+.+. +.+++.+.++..+
T Consensus 192 ~~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~~~~v~~~g~~~~ 265 (374)
T TIGR03088 192 DESVVVGTVGRLQA--VKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPA----RGACEQMVRAAGLAHLVWLPGERDD 265 (374)
T ss_pred CCCeEEEEEecCCc--ccCHHHHHHHHHHHHHhCcccccceEEEEecCCch----HHHHHHHHHHcCCcceEEEcCCcCC
Confidence 34567788887752 2222333444332 2 234455433221 1223222222 3456666665443
Q ss_pred -HHHhhcccccccc--cc--cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 357 -EEVLAHQAVAGFL--TH--SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 357 -~~lL~~~~~~~~I--~H--GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
.++|..+++ +| ++ |--.++.||+++|+|+|+....+ +...+ +.-..|..++ .-+.++++++|.++++
T Consensus 266 ~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i-~~~~~g~~~~-~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 266 VPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELV-QHGVTGALVP-PGDAVALARALQPYVS 337 (374)
T ss_pred HHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHh-cCCCceEEeC-CCCHHHHHHHHHHHHh
Confidence 468999998 65 33 44569999999999999976533 44455 5534676665 3578999999999998
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 432 ERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 432 ~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
+ +..+ .++++..++.+.+.-+....++++++-..
T Consensus 338 ~--~~~~---~~~~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 338 D--PAAR---RAHGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred C--HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5 3222 22333333322234454555555555443
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=0.0046 Score=65.53 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=91.2
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHh----cCCceEEEECCCCCCCchhhHHHHHHh--hcCCceEeeccCh-HHHhhc
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVD----SKQRFLWVIRPDSVIGEGDALAELVEG--TKERGLLVSWVPQ-EEVLAH 362 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~----~~~~~i~~~~~~~~~~~~~~l~~~~~~--~~~nv~~~~~~pq-~~lL~~ 362 (476)
..+++..|... +......+++++.. .+.--++.++.+.. .+.+..+.+. +.++|.+.+|.++ ..+|..
T Consensus 517 ~~vIg~VGRL~--~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~---~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~a 591 (694)
T PRK15179 517 RFTVGTVMRVD--DNKRPFLWVEAAQRFAASHPKVRFIMVGGGPL---LESVREFAQRLGMGERILFTGLSRRVGYWLTQ 591 (694)
T ss_pred CeEEEEEEeCC--ccCCHHHHHHHHHHHHHHCcCeEEEEEccCcc---hHHHHHHHHHcCCCCcEEEcCCcchHHHHHHh
Confidence 34556667654 22333445555543 33222444443311 1233333322 4578999899876 358888
Q ss_pred cccccccc---ccC-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHhH--hHH
Q 011832 363 QAVAGFLT---HSG-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMVE--RKE 435 (476)
Q Consensus 363 ~~~~~~I~---HGG-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~~--~~~ 435 (476)
+++ ||. +.| -+++.||+.+|+|+|+.... .....+ +.-..|..++. ..+.+++.+++.+++.+ ..+
T Consensus 592 aDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~ 664 (694)
T PRK15179 592 FNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPADTVTAPDVAEALARIHDMCAADP 664 (694)
T ss_pred cCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCCCCChHHHHHHHHHHHhChhccH
Confidence 888 554 455 45899999999999997653 244455 65346888763 55667777777776652 114
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 436 EFMRAADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 436 ~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
.+++++++... +.-+....++++++-
T Consensus 665 ~l~~~ar~~a~-------~~FS~~~~~~~~~~l 690 (694)
T PRK15179 665 GIARKAADWAS-------ARFSLNQMIASTVRC 690 (694)
T ss_pred HHHHHHHHHHH-------HhCCHHHHHHHHHHH
Confidence 55555544332 234444555555543
No 105
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=0.0008 Score=64.48 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=94.9
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHH----Hhc-CCceEEEECCCCCCCchhhHHHHHHhhcC--CceEe---eccChH
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGL----VDS-KQRFLWVIRPDSVIGEGDALAELVEGTKE--RGLLV---SWVPQE 357 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~----~~~-~~~~i~~~~~~~~~~~~~~l~~~~~~~~~--nv~~~---~~~pq~ 357 (476)
.+..|.+++=-..+.. +.++.+.+++ +.. +..+|..+... .... ++ . ..++.+ |+.+. +|.+..
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~--~~v~-e~-~-~~~L~~~~~v~li~pl~~~~f~ 276 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR--PRVR-EL-V-LKRLKNVERVKLIDPLGYLDFH 276 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC--hhhh-HH-H-HHHhCCCCcEEEeCCcchHHHH
Confidence 3457888764444443 4445555544 444 23444443322 1111 11 1 123433 46653 777888
Q ss_pred HHhhcccccccccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHH
Q 011832 358 EVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEF 437 (476)
Q Consensus 358 ~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y 437 (476)
.++.++.+ ++|-.|. -.-||-..|+|++++=...+++. ++ +. |.-+.+. .+.+.|.+++.+++++ +.+
T Consensus 277 ~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~a-gt~~lvg--~~~~~i~~~~~~ll~~--~~~ 344 (383)
T COG0381 277 NLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-EA-GTNILVG--TDEENILDAATELLED--EEF 344 (383)
T ss_pred HHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-ec-CceEEeC--ccHHHHHHHHHHHhhC--hHH
Confidence 89999887 8888773 46799999999999999999996 44 42 5555443 6789999999999996 555
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011832 438 MRAADRMATMARTTANEGGPSYCNLDRLID 467 (476)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~ 467 (476)
.++......-+ .+|.++.+.++.+..
T Consensus 345 ~~~m~~~~npY----gdg~as~rIv~~l~~ 370 (383)
T COG0381 345 YERMSNAKNPY----GDGNASERIVEILLN 370 (383)
T ss_pred HHHHhcccCCC----cCcchHHHHHHHHHH
Confidence 55444433332 234444444444443
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.15 E-value=0.0022 Score=65.76 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=76.7
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHh---cCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH---HHhhc
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVD---SKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE---EVLAH 362 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~---~lL~~ 362 (476)
+..+++..|... ....+..++++++. .+.++++.-.++. .....+..+..+.++|+.+....++. .+++.
T Consensus 295 ~~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 370 (476)
T cd03791 295 DAPLFGFVGRLT--EQKGIDLLLEALPELLELGGQLVILGSGDP--EYEEALRELAARYPGRVAVLIGYDEALAHLIYAG 370 (476)
T ss_pred CCCEEEEEeecc--ccccHHHHHHHHHHHHHcCcEEEEEecCCH--HHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHh
Confidence 345677778775 23334445555443 3445555543321 00112234444456788755434443 47888
Q ss_pred ccccccccc---cCc-hhHHHHHhhCCceeccCCcc--cchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 363 QAVAGFLTH---SGW-NSTLESIVAGVPMICWPYFA--DQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 363 ~~~~~~I~H---GG~-~s~~eal~~GvP~l~iP~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
+++ ++.- -|+ .+.+||+++|+|+|+....+ |.-.+...- .+-|.|..++ .-+.++|.++|.++++
T Consensus 371 aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~-~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 371 ADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFE-GYNADALLAALRRALA 441 (476)
T ss_pred CCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeC-CCCHHHHHHHHHHHHH
Confidence 888 6532 233 37789999999999876533 222111111 1224788776 3578999999999987
No 107
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.10 E-value=0.0028 Score=61.87 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCCeEEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCchhh-HHHHHHhhcCCceEeec-cChHHH
Q 011832 287 PVRSVLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGEGDA-LAELVEGTKERGLLVSW-VPQEEV 359 (476)
Q Consensus 287 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~-l~~~~~~~~~nv~~~~~-~pq~~l 359 (476)
+++++|.+-.||--+-=...+-.++++.+.+ +.++++..... .... +.........++.+.-. -.-.++
T Consensus 182 ~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (373)
T PF02684_consen 182 PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE----VHEELIEEILAEYPPDVSIVIIEGESYDA 257 (373)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH----HHHHHHHHHHHhhCCCCeEEEcCCchHHH
Confidence 3567999999987532223344455654432 23555544322 1111 12222223344443322 245678
Q ss_pred hhcccccccccccCchhHHHHHhhCCceeccCCc-ccchhhHHHHHhhhc-cee-------e-----cccccCHHHHHHH
Q 011832 360 LAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYF-ADQQINSRFVSEVWN-LGL-------D-----MKDVCDRNVVEKM 425 (476)
Q Consensus 360 L~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~-~DQ~~na~~v~~~~G-~G~-------~-----~~~~~~~~~l~~~ 425 (476)
|..+++ .+.-.| ..+.|+..+|+|||++=-. .=-+..|++++. .. +|+ . +...+|++.|.++
T Consensus 258 m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~ 333 (373)
T PF02684_consen 258 MAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAE 333 (373)
T ss_pred HHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHH
Confidence 988888 444444 5689999999999987432 223445555532 11 110 1 1236899999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 011832 426 VNDLMVERKEEFMRAADRMATMARTTANEGGPSYCN 461 (476)
Q Consensus 426 i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~ 461 (476)
+.++|+| +..++..+...+.+++..+.+.++...
T Consensus 334 ~~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 334 LLELLEN--PEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred HHHHhcC--HHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 9999996 445555555666666545555554443
No 108
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.97 E-value=0.0004 Score=69.13 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=76.7
Q ss_pred CCCeEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHh--hcCCceEeeccChHHHh---
Q 011832 287 PVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEG--TKERGLLVSWVPQEEVL--- 360 (476)
Q Consensus 287 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~--~~~nv~~~~~~pq~~lL--- 360 (476)
+++.++|.||....+..++.+....+.++..+.-.+|....+... ...+ ..+... -++++.+..+.|+.+-|
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--EARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--HHHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--HHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 466799999999999999999999999999999889887654221 1122 222211 24678888888876544
Q ss_pred hcccccc-cccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 361 AHQAVAG-FLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 361 ~~~~~~~-~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
...|+-+ -...+|..|++|||+.|||+|.+|--.=.-..+..+...+|+...+.. +.++-.+.--++-+|
T Consensus 360 ~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~--s~~eYv~~Av~La~D 430 (468)
T PF13844_consen 360 QLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD--SEEEYVEIAVRLATD 430 (468)
T ss_dssp GG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S--SHHHHHHHHHHHHH-
T ss_pred hhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC--CHHHHHHHHHHHhCC
Confidence 3455510 135688999999999999999999533222233333266777755542 444443333334444
No 109
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.94 E-value=0.0007 Score=67.23 Aligned_cols=166 Identities=14% Similarity=0.189 Sum_probs=97.2
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCC-Cch----hhHHHHHHhhcCCceEeeccChHH--
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVI-GEG----DALAELVEGTKERGLLVSWVPQEE-- 358 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~-~~~----~~l~~~~~~~~~nv~~~~~~pq~~-- 358 (476)
.+++..|... +...+..+++|+..+ +.+++++-++.... +.. ..+..+..++..++.+.+++|+.+
T Consensus 194 ~~il~~Grl~--~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~ 271 (380)
T PRK15484 194 TVLLYAGRIS--PDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMH 271 (380)
T ss_pred eEEEEeccCc--cccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHH
Confidence 4566667765 233344455555432 23444443222111 011 122233344567888999998654
Q ss_pred -Hhhcccccccccc----cCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 359 -VLAHQAVAGFLTH----SGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 359 -lL~~~~~~~~I~H----GG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+++.+++ +|.- .|+ .++.||+++|+|+|+....+ +...+ +.-..|..+....+.++++++|.+++++
T Consensus 272 ~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv-~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 272 NYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFV-LEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhc-ccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 6888898 6542 443 57789999999999986532 34445 5534676554446899999999999996
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011832 433 RKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKM 471 (476)
Q Consensus 433 ~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 471 (476)
+..+ ++++..++...+.-+-...++++.+.+..
T Consensus 345 --~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 345 --PELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred --HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4432 34444433233345555666666666543
No 110
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.88 E-value=0.00073 Score=58.71 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=83.8
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHh-----cCCceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccCh---H
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVD-----SKQRFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQ---E 357 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~-----~~~~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq---~ 357 (476)
+++.+++..|.... ...+..+++++.. .+.-.++.++... ....+....+ .+.+++.+..++++ .
T Consensus 13 ~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 87 (172)
T PF00534_consen 13 DKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE---YKKELKNLIEKLNLKENIIFLGYVPDDELD 87 (172)
T ss_dssp TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCC---HHHHHHHHHHHTTCGTTEEEEESHSHHHHH
T ss_pred CCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEcccc---cccccccccccccccccccccccccccccc
Confidence 44567777887752 2334445555443 2233344444111 1112222212 35678999999983 3
Q ss_pred HHhhcccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 358 EVLAHQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 358 ~lL~~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+++..+++ +|+. |...++.||+++|+|+|+. |...+...+ ...+.|..++.. +.+++.++|.+++++
T Consensus 88 ~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~~-~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 88 ELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDPN-DIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEESTT-SHHHHHHHHHHHHHH
T ss_pred ccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCCC-CHHHHHHHHHHHHCC
Confidence 58888888 7766 5677999999999999975 455555666 664668888744 999999999999997
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.83 E-value=0.022 Score=59.21 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=72.0
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH-HHhhccc
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE-EVLAHQA 364 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~-~lL~~~~ 364 (476)
++|+ |-.. ....+..+++++..+ +.++ ..++.+.. ...+..+..++.-++.+.++.++. +++..++
T Consensus 549 iLfV--GRLa--~EKGld~LLeAla~L~~~~pnvrL-vIVGDGP~---reeLe~la~eLgL~V~FLG~~dd~~~lyasaD 620 (794)
T PLN02501 549 AYFL--GKMV--WAKGYRELIDLLAKHKNELDGFNL-DVFGNGED---AHEVQRAAKRLDLNLNFLKGRDHADDSLHGYK 620 (794)
T ss_pred eEEE--Eccc--ccCCHHHHHHHHHHHHhhCCCeEE-EEEcCCcc---HHHHHHHHHHcCCEEEecCCCCCHHHHHHhCC
Confidence 5554 4443 345566677776543 2233 33443311 112322222232346666777765 5898888
Q ss_pred cccccc---ccC-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 365 VAGFLT---HSG-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 365 ~~~~I~---HGG-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+ ||. +=| ..++.||+++|+|+|+.-..+... + ..-+-|... -+.+.+.++|.++|++
T Consensus 621 V--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~g~nGll~---~D~EafAeAI~~LLsd 681 (794)
T PLN02501 621 V--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RSFPNCLTY---KTSEDFVAKVKEALAN 681 (794)
T ss_pred E--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-eecCCeEec---CCHHHHHHHHHHHHhC
Confidence 8 765 223 458999999999999987755321 3 331222222 3789999999999995
No 112
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.78 E-value=0.00018 Score=70.50 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=86.0
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH---HHhhccccccc
Q 011832 292 LYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE---EVLAHQAVAGF 368 (476)
Q Consensus 292 I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~---~lL~~~~~~~~ 368 (476)
.++..|+.. +......++++++.++.++++.-.++ ..+.+.+...+||.+.+++|+. ++++.+++-.+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~-------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ 267 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP-------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLF 267 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh-------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEE
Confidence 345667765 33446667888888887766654433 1133334567899999999985 47888888333
Q ss_pred ccccCch-hHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 369 LTHSGWN-STLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 369 I~HGG~~-s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
-+.-|.| ++.||+++|+|+|+....+ ....+ +.-+.|..++ .-+.+.++++|.+++++
T Consensus 268 ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~-~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 268 PAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFE-EQTVESLAAAVERFEKN 326 (351)
T ss_pred CCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeC-CCCHHHHHHHHHHHHhC
Confidence 2344443 5789999999999986533 33345 4445787776 34788899999999986
No 113
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.72 E-value=0.039 Score=53.07 Aligned_cols=177 Identities=18% Similarity=0.197 Sum_probs=95.5
Q ss_pred hhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcC-----CceEEEECCCCCCCchhhH-HHHHHhhcCCc-eE
Q 011832 278 SCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSK-----QRFLWVIRPDSVIGEGDAL-AELVEGTKERG-LL 350 (476)
Q Consensus 278 ~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv-~~ 350 (476)
...+-+....+++++.+-.||--+-=...+..+.++.+++. .+|+.-+.... .+.+ ... +..+. ..
T Consensus 177 ~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~----~~~~~~~~---~~~~~~~~ 249 (381)
T COG0763 177 AAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK----YRRIIEEA---LKWEVAGL 249 (381)
T ss_pred HHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH----HHHHHHHH---hhccccCc
Confidence 34444544456779999999885322333444566655442 46665554331 0111 111 11121 12
Q ss_pred eecc-Ch--HHHhhcccccccccccCchhHHHHHhhCCceeccCC-cccchhhHHHHHhhhc-c-------eeec-----
Q 011832 351 VSWV-PQ--EEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPY-FADQQINSRFVSEVWN-L-------GLDM----- 413 (476)
Q Consensus 351 ~~~~-pq--~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~-~~DQ~~na~~v~~~~G-~-------G~~~----- 413 (476)
.-++ ++ .+.+..+|+ .+.-+| .-+.|+..+|+|||+.=- ..=-+..|++.+. .. + |..+
T Consensus 250 ~~~~~~~~~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEli 325 (381)
T COG0763 250 SLILIDGEKRKAFAAADA--ALAASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELI 325 (381)
T ss_pred eEEecCchHHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHH
Confidence 2222 22 247878887 555554 347899999999997521 1112223444321 11 1 1111
Q ss_pred ccccCHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011832 414 KDVCDRNVVEKMVNDLMVE--RKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDI 469 (476)
Q Consensus 414 ~~~~~~~~l~~~i~~~l~~--~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 469 (476)
.+.++++.|++++..++.| +...+++...++.+. ++++++++.+.+.+++.+
T Consensus 326 q~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~----l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 326 QEDCTPENLARALEELLLNGDRREALKEKFRELHQY----LREDPASEIAAQAVLELL 379 (381)
T ss_pred hhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH----HcCCcHHHHHHHHHHHHh
Confidence 1268899999999999996 112444555555555 445667777777777654
No 114
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.71 E-value=0.063 Score=53.13 Aligned_cols=78 Identities=18% Similarity=0.110 Sum_probs=52.9
Q ss_pred cCCceEeeccChHH---Hhhcccccccc------cccCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecc
Q 011832 345 KERGLLVSWVPQEE---VLAHQAVAGFL------THSGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMK 414 (476)
Q Consensus 345 ~~nv~~~~~~pq~~---lL~~~~~~~~I------~HGG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~ 414 (476)
.+||.+.+++|+.+ .+.++++..+- +.++. +.+.|++++|+|+|..++ ...+ +..+.+....
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYEDEVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcCcEEEeC
Confidence 37999999999765 67788883221 22333 358999999999998763 2222 3323233332
Q ss_pred cccCHHHHHHHHHHHHhH
Q 011832 415 DVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 415 ~~~~~~~l~~~i~~~l~~ 432 (476)
-+.+++.++|.+++.+
T Consensus 325 --~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 325 --DDPEEFVAAIEKALLE 340 (373)
T ss_pred --CCHHHHHHHHHHHHhc
Confidence 3899999999998763
No 115
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.70 E-value=0.0016 Score=65.40 Aligned_cols=163 Identities=18% Similarity=0.133 Sum_probs=94.2
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhc---C--CceEEEECCCCCCCchhhHHHHHHh--hcCCceEeeccChHH---H
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDS---K--QRFLWVIRPDSVIGEGDALAELVEG--TKERGLLVSWVPQEE---V 359 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~--~~~i~~~~~~~~~~~~~~l~~~~~~--~~~nv~~~~~~pq~~---l 359 (476)
...+++.|.... ...+..+++++..+ . .++.|.+-++.. ....+..+... ..++|.+.+|+++.+ +
T Consensus 230 ~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~ 305 (407)
T cd04946 230 TLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAESKPENISVNFTGELSNSEVYKL 305 (407)
T ss_pred CEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHhcCCCceEEEecCCChHHHHHH
Confidence 456677787752 23344455555443 1 356665433311 11122222222 235688899999875 4
Q ss_pred hhcccccccccccC----chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHH
Q 011832 360 LAHQAVAGFLTHSG----WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKE 435 (476)
Q Consensus 360 L~~~~~~~~I~HGG----~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~ 435 (476)
+..+++.+||...- -.+++||+++|+|+|+.... .....+ +..+.|..+...-+.++++++|.++++| +
T Consensus 306 ~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i-~~~~~G~l~~~~~~~~~la~~I~~ll~~--~ 378 (407)
T cd04946 306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIV-DNGGNGLLLSKDPTPNELVSSLSKFIDN--E 378 (407)
T ss_pred HhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHh-cCCCcEEEeCCCCCHHHHHHHHHHHHhC--H
Confidence 44433333665432 45899999999999986533 355566 6634888776556889999999999985 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011832 436 EFMRAADRMATMARTTANEGGPSYCNLDRLI 466 (476)
Q Consensus 436 ~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i 466 (476)
..+ .+|++..++.+.+.-+......+|+
T Consensus 379 ~~~---~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 379 EEY---QTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHH---HHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 322 3344444443444455555555443
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.67 E-value=0.014 Score=59.73 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=80.0
Q ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhc---CCce-EEEECCCCCCCc-hhhHHHHHH--hhcCCceEeeccChHHHhh
Q 011832 289 RSVLYVSFGSITLLKREQLIEFWHGLVDS---KQRF-LWVIRPDSVIGE-GDALAELVE--GTKERGLLVSWVPQEEVLA 361 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~-i~~~~~~~~~~~-~~~l~~~~~--~~~~nv~~~~~~pq~~lL~ 361 (476)
+..+++..|... +...+..+++++..+ ..++ ++.++....... .+++..+.+ .+.+||.+.+...-.++++
T Consensus 292 ~~~~i~~vGrl~--~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~ 369 (475)
T cd03813 292 EPPVVGLIGRVV--PIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLP 369 (475)
T ss_pred CCcEEEEEeccc--cccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHH
Confidence 345667778775 233344455555432 2222 444443321100 111122222 2457888888666678998
Q ss_pred cccccccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhh-----c-ceeecccccCHHHHHHHHHHHHh
Q 011832 362 HQAVAGFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVW-----N-LGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 362 ~~~~~~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~-----G-~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
.+++ +|.- |--.++.||+++|+|+|+.. .......+ +.. | .|..++ .-+.++++++|.++++
T Consensus 370 ~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv-~~~~~~~~g~~G~lv~-~~d~~~la~ai~~ll~ 441 (475)
T cd03813 370 KLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELI-EGADDEALGPAGEVVP-PADPEALARAILRLLK 441 (475)
T ss_pred hCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHh-cCCcccccCCceEEEC-CCCHHHHHHHHHHHhc
Confidence 8888 5533 34568999999999999953 33344444 441 2 676665 4689999999999998
Q ss_pred H
Q 011832 432 E 432 (476)
Q Consensus 432 ~ 432 (476)
|
T Consensus 442 ~ 442 (475)
T cd03813 442 D 442 (475)
T ss_pred C
Confidence 6
No 117
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.00081 Score=53.87 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=75.6
Q ss_pred EEEEeccccccCHHHHH--HHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCc-eEeec--cC-hHHHhhcccc
Q 011832 292 LYVSFGSITLLKREQLI--EFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERG-LLVSW--VP-QEEVLAHQAV 365 (476)
Q Consensus 292 I~vs~Gs~~~~~~~~~~--~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv-~~~~~--~p-q~~lL~~~~~ 365 (476)
|||+-||....-..... ++.+-.+.-..++|..++.+.. .|-|. .+.+| -+ .+.+...+++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~-------------kpvagl~v~~F~~~~kiQsli~darI 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI-------------KPVAGLRVYGFDKEEKIQSLIHDARI 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc-------------ccccccEEEeechHHHHHHHhhcceE
Confidence 78999998411111111 1222223334588999987521 23233 44444 33 3567766666
Q ss_pred cccccccCchhHHHHHhhCCceeccCCcc--------cchhhHHHHHhhhcceeeccc-cc-CHHHHHHHHHHHHh
Q 011832 366 AGFLTHSGWNSTLESIVAGVPMICWPYFA--------DQQINSRFVSEVWNLGLDMKD-VC-DRNVVEKMVNDLMV 431 (476)
Q Consensus 366 ~~~I~HGG~~s~~eal~~GvP~l~iP~~~--------DQ~~na~~v~~~~G~G~~~~~-~~-~~~~l~~~i~~~l~ 431 (476)
+|+|+|-||+..++..++|.+++|--. -|-.-|..+ .+.+.=..+.+ +. -.+-+...+.+++.
T Consensus 69 --VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kl-ae~~~vv~~spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 69 --VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKL-AEINYVVACSPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred --EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHH-HhcCceEEEcCCchhhHHhHhhhhhhhcC
Confidence 999999999999999999999999633 277778888 45576666553 21 23334444444444
No 118
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.35 E-value=0.0012 Score=64.39 Aligned_cols=112 Identities=15% Similarity=0.284 Sum_probs=78.4
Q ss_pred hcCCceEeeccChHHHhhc--ccccccccc-------cCc------hhHHHHHhhCCceeccCCcccchhhHHHHHhhhc
Q 011832 344 TKERGLLVSWVPQEEVLAH--QAVAGFLTH-------SGW------NSTLESIVAGVPMICWPYFADQQINSRFVSEVWN 408 (476)
Q Consensus 344 ~~~nv~~~~~~pq~~lL~~--~~~~~~I~H-------GG~------~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G 408 (476)
..+||.+.+|+|+.++... .+.+++... |.. +-+.+.+++|+|+|+. ++...+..| ++.+
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 4679999999999876432 133222111 111 1277789999999985 455677777 7879
Q ss_pred ceeecccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011832 409 LGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLID 467 (476)
Q Consensus 409 ~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~ 467 (476)
+|..++ +.+++.+++.++..++...+++|++++++++++ |.--.+++++++.
T Consensus 280 ~G~~v~---~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD---SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC---CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 999997 667899999887665556789999999999886 5544444555443
No 119
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.06 E-value=0.006 Score=61.32 Aligned_cols=126 Identities=19% Similarity=0.246 Sum_probs=86.4
Q ss_pred CCCeEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhH---HHHHHhhcCCceEeeccChHHHhhc-
Q 011832 287 PVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL---AELVEGTKERGLLVSWVPQEEVLAH- 362 (476)
Q Consensus 287 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l---~~~~~~~~~nv~~~~~~pq~~lL~~- 362 (476)
+++.+||.+|--.-..+++.++.-.+.++..+.-++|....+... ++.-. +++ +--|++|++..-++..+=...
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g-e~rf~ty~~~~-Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG-EQRFRTYAEQL-GLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc-hHHHHHHHHHh-CCCccceeeccccchHHHHHhh
Confidence 466799999998889999999999999999999999999877433 22111 111 113567777666654442222
Q ss_pred --cc--ccccccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc
Q 011832 363 --QA--VAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD 415 (476)
Q Consensus 363 --~~--~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~ 415 (476)
+| +.-+.+ .|..|.++.|+.|||||.+|.-.=-...|..+...+|+|..+.+
T Consensus 834 ~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 834 QLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred hhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 12 222444 47889999999999999999855444455544467899986654
No 120
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.03 E-value=0.028 Score=57.76 Aligned_cols=146 Identities=13% Similarity=0.159 Sum_probs=85.5
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhc---CCce-EEEECCCCCCCchhhHHHHHHh--hcCCceEeeccChHHHhhccc
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDS---KQRF-LWVIRPDSVIGEGDALAELVEG--TKERGLLVSWVPQEEVLAHQA 364 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~-i~~~~~~~~~~~~~~l~~~~~~--~~~nv~~~~~~pq~~lL~~~~ 364 (476)
.++++.|... +...+..+++|+..+ ...+ +..++.+.. ...+..+... +.++|.+.++.+..+++..++
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~---~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~ad 394 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE---KQKLQKIINENQAQDYIHLKGHRNLSEVYKDYE 394 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECchh---HHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCC
Confidence 4566778775 334555566666443 1122 233443311 1233333222 356788889988889999999
Q ss_pred cccccc---ccCc-hhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc---ccC----HHHHHHHHHHHHhH-
Q 011832 365 VAGFLT---HSGW-NSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD---VCD----RNVVEKMVNDLMVE- 432 (476)
Q Consensus 365 ~~~~I~---HGG~-~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~---~~~----~~~l~~~i~~~l~~- 432 (476)
+ +|. .-|+ .++.||+++|+|+|+.-..+ .+...+ +.-.-|..++. .-+ .+.|+++|.+++++
T Consensus 395 v--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 395 L--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred E--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChH
Confidence 8 664 3344 58999999999999975421 133344 54335666651 123 78899999999963
Q ss_pred hHHHHHHHHHHHHHH
Q 011832 433 RKEEFMRAADRMATM 447 (476)
Q Consensus 433 ~~~~y~~~a~~~~~~ 447 (476)
....+.++|++.++.
T Consensus 469 ~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 469 DIDAFHEYSYQIAEG 483 (500)
T ss_pred HHHHHHHHHHHHHHh
Confidence 222344555444433
No 121
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.00 E-value=0.46 Score=47.55 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=68.2
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhcCCce-EEEECCCCCCCchhhHHHHHHhhcCCceEeeccC-h---HHHhhccccc
Q 011832 292 LYVSFGSITLLKREQLIEFWHGLVDSKQRF-LWVIRPDSVIGEGDALAELVEGTKERGLLVSWVP-Q---EEVLAHQAVA 366 (476)
Q Consensus 292 I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~-i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~p-q---~~lL~~~~~~ 366 (476)
+++..|............+++|+..++.++ ++.++.+.. ..+.++....+.. + .++++.+|+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~------------~~~~~v~~~g~~~~~~~l~~~y~~aDv- 309 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP------------FTAGNVVNHGFETDKRKLMSALNQMDA- 309 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc------------ccccceEEecCcCCHHHHHHHHHhCCE-
Confidence 344445432223344566888888775543 344443210 1235566666653 2 346666887
Q ss_pred ccccc----cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHH
Q 011832 367 GFLTH----SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVN 427 (476)
Q Consensus 367 ~~I~H----GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~ 427 (476)
||.- |--.++.||+++|+|+|+....+ ....+ +. +-|..++ .-+.+.|+++++
T Consensus 310 -fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~-~~d~~~La~~~~ 366 (405)
T PRK10125 310 -LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVS-EEEVLQLAQLSK 366 (405)
T ss_pred -EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEEC-CCCHHHHHhccC
Confidence 6653 33458999999999999997765 22233 44 5687776 347778887543
No 122
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.92 E-value=0.083 Score=47.43 Aligned_cols=51 Identities=24% Similarity=0.230 Sum_probs=37.3
Q ss_pred hcCCceEeeccCh-H---HHhhcccccccccccC----chhHHHHHhhCCceeccCCcccc
Q 011832 344 TKERGLLVSWVPQ-E---EVLAHQAVAGFLTHSG----WNSTLESIVAGVPMICWPYFADQ 396 (476)
Q Consensus 344 ~~~nv~~~~~~pq-~---~lL~~~~~~~~I~HGG----~~s~~eal~~GvP~l~iP~~~DQ 396 (476)
..+|+.+.++++. . .++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.+
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 4568888888633 2 24444777 777665 78999999999999998875543
No 123
>PRK14098 glycogen synthase; Provisional
Probab=96.72 E-value=0.055 Score=55.57 Aligned_cols=167 Identities=7% Similarity=-0.022 Sum_probs=92.6
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHh---cCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH---HHhhcc
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVD---SKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE---EVLAHQ 363 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~---~lL~~~ 363 (476)
..+++..|.... ...+..+++++.. .+.++++.-.++. .....+.++..+.++++.+...++.. .+++.+
T Consensus 307 ~~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lvivG~G~~--~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~a 382 (489)
T PRK14098 307 TPLVGVIINFDD--FQGAELLAESLEKLVELDIQLVICGSGDK--EYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGL 382 (489)
T ss_pred CCEEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEEEeCCCH--HHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhC
Confidence 356667777652 2333344454443 3445554433220 01123345555667889988888874 588889
Q ss_pred ccccccccc---Cch-hHHHHHhhCCceeccCCcc--cchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHH
Q 011832 364 AVAGFLTHS---GWN-STLESIVAGVPMICWPYFA--DQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEF 437 (476)
Q Consensus 364 ~~~~~I~HG---G~~-s~~eal~~GvP~l~iP~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y 437 (476)
|+ |+.-. |+| +.+||+++|+|.|+....+ |...+ .. +.-+.|...+ ..+.+.|.++|.++++. |
T Consensus 383 Di--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~-~~d~~~la~ai~~~l~~----~ 452 (489)
T PRK14098 383 DM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFH-DYTPEALVAKLGEALAL----Y 452 (489)
T ss_pred CE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeC-CCCHHHHHHHHHHHHHH----H
Confidence 98 66432 333 7789999999888876533 22111 11 2235677665 46789999999998751 1
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011832 438 MRAADRMATMARTTANEGGPSYCNLDRLIDDIKM 471 (476)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 471 (476)
.. -.+++++.++++...-+-.+.++++++-..+
T Consensus 453 ~~-~~~~~~~~~~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 453 HD-EERWEELVLEAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred cC-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 11 0122222223333445555556666555443
No 124
>PHA01633 putative glycosyl transferase group 1
Probab=96.69 E-value=0.027 Score=54.31 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=57.5
Q ss_pred hcCCceEe---eccChH---HHhhcccccccccc---cCc-hhHHHHHhhCCceeccCC------cccc------hhhHH
Q 011832 344 TKERGLLV---SWVPQE---EVLAHQAVAGFLTH---SGW-NSTLESIVAGVPMICWPY------FADQ------QINSR 401 (476)
Q Consensus 344 ~~~nv~~~---~~~pq~---~lL~~~~~~~~I~H---GG~-~s~~eal~~GvP~l~iP~------~~DQ------~~na~ 401 (476)
+++++.+. +++++. ++++.+++ |+.- -|+ .++.||+++|+|+|+--. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 67888887 455654 57888888 7753 344 478999999999998633 3333 23333
Q ss_pred HHHh-hhcceeecccccCHHHHHHHHHHHHh
Q 011832 402 FVSE-VWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 402 ~v~~-~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
-.+. ..|.|...+ ..++++++++|.+++.
T Consensus 277 ~~~~~~~g~g~~~~-~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 277 EYYDKEHGQKWKIH-KFQIEDMANAIILAFE 306 (335)
T ss_pred HhcCcccCceeeec-CCCHHHHHHHHHHHHh
Confidence 3312 235666655 5899999999999966
No 125
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.69 E-value=0.025 Score=55.76 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=79.1
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhc-----CCceEEEECCCCCCCchhhHHHHHH--hhcCCceEeeccChH-HHhhc
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDS-----KQRFLWVIRPDSVIGEGDALAELVE--GTKERGLLVSWVPQE-EVLAH 362 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~l~~~~~--~~~~nv~~~~~~pq~-~lL~~ 362 (476)
..++..|... +...+..+++++..+ +.++++...+.. ...+..... .+++++.+.++.++. .++..
T Consensus 205 ~~i~~vgrl~--~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 278 (372)
T cd04949 205 HKIITVARLA--PEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE----EEKLKELIEELGLEDYVFLKGYTRDLDEVYQK 278 (372)
T ss_pred CeEEEEEccC--cccCHHHHHHHHHHHHHhCCCcEEEEEEeCch----HHHHHHHHHHcCCcceEEEcCCCCCHHHHHhh
Confidence 3456667664 334444455555432 235554433221 112222111 246778888877664 68989
Q ss_pred ccccccccc--cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 363 QAVAGFLTH--SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 363 ~~~~~~I~H--GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+++-.+.++ |...++.||+++|+|+|+..... .....+ +.-..|..++ .-+.++++++|.+++++
T Consensus 279 ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~-~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVP-KGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeC-CCcHHHHHHHHHHHHcC
Confidence 988445554 33558999999999999864321 133444 4435677665 35899999999999985
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.68 E-value=0.0084 Score=49.59 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=50.0
Q ss_pred cCCceEeeccCh-HHHhhcccccccccc---cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHH
Q 011832 345 KERGLLVSWVPQ-EEVLAHQAVAGFLTH---SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRN 420 (476)
Q Consensus 345 ~~nv~~~~~~pq-~~lL~~~~~~~~I~H---GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 420 (476)
.+|+.+.+|++. .++++.+++....+. |-.+++.|++.+|+|+|+.+.. ....+ +..|.|..+. -+.+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~~--~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLVA--NDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T--T-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEEC--CCHH
Confidence 469999999965 358889998555432 2348999999999999998661 12222 4457777663 4999
Q ss_pred HHHHHHHHHHhH
Q 011832 421 VVEKMVNDLMVE 432 (476)
Q Consensus 421 ~l~~~i~~~l~~ 432 (476)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
No 127
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.58 E-value=0.12 Score=51.71 Aligned_cols=178 Identities=11% Similarity=0.154 Sum_probs=104.1
Q ss_pred hhhhcCCCCCeEEEEEecccccc------C-H---HHHHHHHHHHHhcCCceEEEECCCCC---CCchhhH-HHHHHhhc
Q 011832 280 IEWLGKQPVRSVLYVSFGSITLL------K-R---EQLIEFWHGLVDSKQRFLWVIRPDSV---IGEGDAL-AELVEGTK 345 (476)
Q Consensus 280 ~~~l~~~~~~~~I~vs~Gs~~~~------~-~---~~~~~~~~a~~~~~~~~i~~~~~~~~---~~~~~~l-~~~~~~~~ 345 (476)
..|+...+.+++|-||....... . . +.+..+++.+...++++++..-.... ..++... ..+.+.++
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 34554333455788876543211 1 1 23334555555558887766432110 1112222 44444554
Q ss_pred C--CceE-e-eccChH--HHhhcccccccccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceee-cc-ccc
Q 011832 346 E--RGLL-V-SWVPQE--EVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLD-MK-DVC 417 (476)
Q Consensus 346 ~--nv~~-~-~~~pq~--~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~-~~-~~~ 417 (476)
. ++.+ . ++-|.. .++++|++ +|..==+ ++.-|+..|||.+.+++ | +-....+ +.+|.... .+ .++
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~~l 377 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIRHL 377 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechhhC
Confidence 3 3333 2 333433 68888887 7764333 35668899999999998 3 3344444 66788765 44 488
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011832 418 DRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKM 471 (476)
Q Consensus 418 ~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 471 (476)
+.++|.+.+.+++++ .+.++++.++-.+.++. ...+.+.++|+.+.+
T Consensus 378 ~~~~Li~~v~~~~~~-r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 378 LDGSLQAMVADTLGQ-LPALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred CHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 999999999999994 24677776666665554 235667777776654
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.52 E-value=0.051 Score=45.12 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=64.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHH
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLME 88 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (476)
||++++.....| ...+++.|.++||+|++++.....+..... .++.+..++.. ......
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~----------~~i~~~~~~~~--------~k~~~~ 59 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII----------EGIKVIRLPSP--------RKSPLN 59 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh----------CCeEEEEecCC--------CCccHH
Confidence 577777665555 568899999999999999994432222211 23566655311 111222
Q ss_pred HHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc---hHHHHHHHcC-CCeEEEec
Q 011832 89 MFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME---FVVDVATELE-IPVIHFRA 140 (476)
Q Consensus 89 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~---~~~~vA~~l~-iP~i~~~~ 140 (476)
.+. . . .+..++++. +||+|.+-.... .+..++...+ +|++....
T Consensus 60 ~~~-~----~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 60 YIK-Y----F-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHH-H----H-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 221 1 2 568888887 899998776554 2334567788 99987544
No 129
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.43 E-value=0.24 Score=50.84 Aligned_cols=117 Identities=17% Similarity=0.119 Sum_probs=67.9
Q ss_pred hcCCceEeeccCh-HHHhhccccccccc---ccC-chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccC
Q 011832 344 TKERGLLVSWVPQ-EEVLAHQAVAGFLT---HSG-WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCD 418 (476)
Q Consensus 344 ~~~nv~~~~~~pq-~~lL~~~~~~~~I~---HGG-~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~ 418 (476)
+.++|.+.+|..+ ..+|..+++ ||. +-| -+++.||+++|+|+|+.... .+...+ +.-..|..++. -+
T Consensus 453 L~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV-~dG~nG~LVp~-~D 524 (578)
T PRK15490 453 ILERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECF-IEGVSGFILDD-AQ 524 (578)
T ss_pred CCCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHc-ccCCcEEEECC-CC
Confidence 4578888888654 358999998 775 345 45999999999999987653 345556 55457777763 34
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 419 RNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 419 ~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
.+.+.+++..+..- ....+...++++..++.+.+.-+..+.+++..+.+.
T Consensus 525 ~~aLa~ai~lA~aL--~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~ 574 (578)
T PRK15490 525 TVNLDQACRYAEKL--VNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIA 574 (578)
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 45555554322110 011111223333333333344555566666655544
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.12 Score=52.15 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=85.6
Q ss_pred CCCeEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHh---hcCCceEeeccChH---HHh
Q 011832 287 PVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEG---TKERGLLVSWVPQE---EVL 360 (476)
Q Consensus 287 ~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~---~~~nv~~~~~~pq~---~lL 360 (476)
+++.+||+||+...+..++.+..=++.++..+.-++|..+++..+..-.-+.++.++ -+++.++..-.|.. +=+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 567799999999999999999999999999999999998875222111111222222 13455665555543 445
Q ss_pred hcccccccc---cccCchhHHHHHhhCCceeccCCcccchh--hHHHHHhhhcceeecc
Q 011832 361 AHQAVAGFL---THSGWNSTLESIVAGVPMICWPYFADQQI--NSRFVSEVWNLGLDMK 414 (476)
Q Consensus 361 ~~~~~~~~I---~HGG~~s~~eal~~GvP~l~iP~~~DQ~~--na~~v~~~~G~G~~~~ 414 (476)
+.+|+ |+ --||..|+.|+|+.|||+|.. .++||- |+..++..+|+-..+.
T Consensus 507 ~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~--~G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 507 GIADL--VLDTYPYGGHTTASDALWMGVPVLTR--VGEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred chhhe--eeecccCCCccchHHHHHhcCceeee--ccHHHHHhhhHHHHHhcCCchhhc
Confidence 55666 65 469999999999999999987 467764 5555556666654443
No 131
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.03 E-value=0.015 Score=44.85 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=49.1
Q ss_pred hhhhhhhcCCCCCeEEEEEecccccc---CH--HHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCce
Q 011832 277 RSCIEWLGKQPVRSVLYVSFGSITLL---KR--EQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGL 349 (476)
Q Consensus 277 ~~~~~~l~~~~~~~~I~vs~Gs~~~~---~~--~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~ 349 (476)
..+..|+...+.++.|+||+||.... .. ..+..+++++..++..++..+..... .++ ..+|+||+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~-------~~l-g~lP~nVR 97 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR-------AEL-GELPDNVR 97 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC-------GGC-CS-TTTEE
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH-------Hhh-CCCCCCCC
Confidence 33567998888999999999999733 22 47888999999999999999986633 222 35788875
No 132
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.00 E-value=1.4 Score=41.33 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=72.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc-hhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN-HERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQL 86 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (476)
|||.|- .+-.-|+..+..+..+|.++||+|.+-+-... ..++-+..+ +.+..+. .....++
T Consensus 1 mkVwiD-I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg----------f~~~~Ig-------k~g~~tl 62 (346)
T COG1817 1 MKVWID-IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG----------FPYKSIG-------KHGGVTL 62 (346)
T ss_pred CeEEEE-cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC----------CCeEeec-------ccCCccH
Confidence 344433 35667999999999999999999988776432 122222222 4444442 1111223
Q ss_pred HHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCc
Q 011832 87 MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 87 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~ 142 (476)
.+.+..... ....|.++..+. +||+.+. -.++.+.-+|..+|+|++.+.-..
T Consensus 63 ~~Kl~~~~e-R~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 63 KEKLLESAE-RVYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHHHH-HHHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 322222211 134567777777 8999999 567788999999999999996543
No 133
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.77 E-value=0.076 Score=40.61 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=53.8
Q ss_pred ccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhc-ceeecccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 011832 371 HSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWN-LGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAADRMATMAR 449 (476)
Q Consensus 371 HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~ 449 (476)
+|-..-+.|++++|+|+|+-.. ......+ +. | -++..+ +.+++.++|.+++++ +..+ +++++..+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~~---~~~el~~~i~~ll~~--~~~~---~~ia~~a~ 74 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITYN---DPEELAEKIEYLLEN--PEER---RRIAKNAR 74 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEEC---CHHHHHHHHHHHHCC--HHHH---HHHHHHHH
Confidence 5566789999999999999865 2333333 33 4 333333 999999999999996 4322 23333333
Q ss_pred HHHhcCCChHHHHHHHHH
Q 011832 450 TTANEGGPSYCNLDRLID 467 (476)
Q Consensus 450 ~~~~~~g~~~~~~~~~i~ 467 (476)
+.+.+..+....++++++
T Consensus 75 ~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHhCCHHHHHHHHHC
Confidence 334446777777777663
No 134
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.74 E-value=0.02 Score=48.36 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhhchHHHH
Q 011832 23 SMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLNTRPLLK 102 (476)
Q Consensus 23 p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (476)
-+..|+++|.++||+|+++++......-+ .. ...+.+..++- +... .. ...... ...+.
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~--------~~~~~~~~~~~--~~~~-~~-~~~~~~--------~~~~~ 64 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDE-EE--------EDGVRVHRLPL--PRRP-WP-LRLLRF--------LRRLR 64 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-S-EE--------ETTEEEEEE----S-SS-SG-GGHCCH--------HHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccc-cc--------cCCceEEeccC--Cccc-hh-hhhHHH--------HHHHH
Confidence 46789999999999999999754433211 10 12356665541 1100 00 000011 12345
Q ss_pred HHHhcCCCCceEEEECCCcc-hHHHHHH-HcCCCeEEEec
Q 011832 103 QMLIDTSPPVSCIIGDACME-FVVDVAT-ELEIPVIHFRA 140 (476)
Q Consensus 103 ~ll~~~~~~~DlvI~D~~~~-~~~~vA~-~l~iP~i~~~~ 140 (476)
+++.....+||+|.+..... ....++. ..++|++....
T Consensus 65 ~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 65 RLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 55521224899999877443 3334455 78999988754
No 135
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.56 E-value=2.3 Score=40.87 Aligned_cols=130 Identities=9% Similarity=0.007 Sum_probs=75.8
Q ss_pred CCeEEEEEecccc---ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeec--cCh-HHHh
Q 011832 288 VRSVLYVSFGSIT---LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSW--VPQ-EEVL 360 (476)
Q Consensus 288 ~~~~I~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~--~pq-~~lL 360 (476)
+++.|.+..|+.. ..+.+.+.++++.+...+.++++..+++. +.+. ..+.+..+.. .+.+- +++ ..++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~----e~~~~~~i~~~~~~~-~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA----EKQRAERIAEALPGA-VVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH----HHHHHHHHHhhCCCC-eecCCCCHHHHHHHH
Confidence 3456666666532 56778888888888766677666544331 1112 3444434432 33332 333 4588
Q ss_pred hcccccccccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcce--eecc---cccCHHHHHHHHHHHH
Q 011832 361 AHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLG--LDMK---DVCDRNVVEKMVNDLM 430 (476)
Q Consensus 361 ~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G--~~~~---~~~~~~~l~~~i~~~l 430 (476)
+++++ +|+. -.|.++=|...|+|+|++= ... +..+. .=.|-. +... ..++.+++.+++.++|
T Consensus 253 ~~a~l--~I~~-DSgp~HlAaa~g~P~i~lf-g~t---~p~~~-~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGV-DTGLTHLAAALDKPTVTLY-GAT---DPGRT-GGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeC-CChHHHHHHHcCCCEEEEE-CCC---CHhhc-ccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 88887 8874 5678999999999999862 111 12221 001111 1111 2789999999998775
No 136
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.18 E-value=0.14 Score=45.31 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=61.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCC---CCCCCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPAD---HPRAGD 84 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~---~~~~~~ 84 (476)
||||+.-=-+. +---+..|+++|.+.||+|+++.|..+....-... .....++........... .+....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si------t~~~pl~~~~~~~~~~~~~~~~~~v~G 73 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI------TLHKPLRVTEVEPGHDPGGVEAYAVSG 73 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--------SSSEEEEEEEE-TTCCSTTEEEEESS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee------cCCCCeEEEEEEecccCCCCCEEEEcC
Confidence 67777764333 34457889999988889999999977654432222 111224443321111111 111112
Q ss_pred cHHHHHHHHHhhchHHHHHHHhcCCCCceEEEEC----------CCcc---hHHHHHHHcCCCeEEEecC
Q 011832 85 QLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGD----------ACME---FVVDVATELEIPVIHFRAI 141 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D----------~~~~---~~~~vA~~l~iP~i~~~~~ 141 (476)
++..- ..-.+..++.+. +||+||+- .++. .++.-|...|||.|.+|..
T Consensus 74 TPaDc-------v~~al~~~~~~~--~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 74 TPADC-------VKLALDGLLPDK--KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp -HHHH-------HHHHHHCTSTTS--S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred cHHHH-------HHHHHHhhhccC--CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 22211 122344454444 69999974 2333 3344566789999999874
No 137
>PLN02939 transferase, transferring glycosyl groups
Probab=94.60 E-value=1.5 Score=47.89 Aligned_cols=135 Identities=8% Similarity=0.040 Sum_probs=78.3
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHh---cCCceEEEECCCCCCCchhhHHHHHHhh--cCCceEeeccChH---HHhhc
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVD---SKQRFLWVIRPDSVIGEGDALAELVEGT--KERGLLVSWVPQE---EVLAH 362 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~nv~~~~~~pq~---~lL~~ 362 (476)
+++...|-.. +...+..+++|+.. .+.++++.-.++. ......+..+..+. .++|.+..+.+.. .+++.
T Consensus 780 pLIg~VGRL~--~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~-~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAa 856 (977)
T PLN02939 780 PLVGCITRLV--PQKGVHLIRHAIYKTAELGGQFVLLGSSPV-PHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAA 856 (977)
T ss_pred eEEEEeecCC--cccChHHHHHHHHHHhhcCCEEEEEeCCCc-HHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHh
Confidence 5666667665 23334445555543 3456555543321 10011233444443 4578888888764 48999
Q ss_pred ccccccccc---cC-chhHHHHHhhCCceeccCCcc--cchhh--HHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 363 QAVAGFLTH---SG-WNSTLESIVAGVPMICWPYFA--DQQIN--SRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 363 ~~~~~~I~H---GG-~~s~~eal~~GvP~l~iP~~~--DQ~~n--a~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
+|+ ||.- =| -.+.+||+++|+|.|+....+ |--.+ ...+.++-+-|...+ ..+++.|.++|.++++
T Consensus 857 ADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~-~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 857 SDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL-TPDEQGLNSALERAFN 930 (977)
T ss_pred CCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec-CCCHHHHHHHHHHHHH
Confidence 998 7753 23 348999999999998876544 32211 111112224566665 3588899999998875
No 138
>PHA01630 putative group 1 glycosyl transferase
Probab=94.48 E-value=0.58 Score=45.41 Aligned_cols=110 Identities=10% Similarity=0.110 Sum_probs=61.7
Q ss_pred eccChHH---Hhhcccccccc--cc-cC-chhHHHHHhhCCceeccCCcc--cch---hhHHHHHhh-----------hc
Q 011832 352 SWVPQEE---VLAHQAVAGFL--TH-SG-WNSTLESIVAGVPMICWPYFA--DQQ---INSRFVSEV-----------WN 408 (476)
Q Consensus 352 ~~~pq~~---lL~~~~~~~~I--~H-GG-~~s~~eal~~GvP~l~iP~~~--DQ~---~na~~v~~~-----------~G 408 (476)
.++|+.+ +++.+|+ |+ ++ .| -.++.||+++|+|+|+.-..+ |.- .|+..+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 3466554 6888888 55 22 33 458999999999999976543 322 122222 11 13
Q ss_pred ceeecccccCHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 409 LGLDMKDVCDRNVVEKMVNDLMVER-KEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 409 ~G~~~~~~~~~~~l~~~i~~~l~~~-~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
+|..++ .+.+++.+++.++|.+. .+.++++..+-+...+ +.-+-.+.++++.+-+.
T Consensus 273 ~G~~v~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 273 VGYFLD--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILE 329 (331)
T ss_pred cccccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHh
Confidence 455444 36778888888888741 1234433333332222 34555555666666554
No 139
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.40 E-value=5.4 Score=38.87 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=61.6
Q ss_pred CCeEEEEEecccc---ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcC-Cce-Eeec--cCh-HH
Q 011832 288 VRSVLYVSFGSIT---LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKE-RGL-LVSW--VPQ-EE 358 (476)
Q Consensus 288 ~~~~I~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~-nv~-~~~~--~pq-~~ 358 (476)
.++.|.+..|+.. ..+.+.+.++++.+...+.++++..++... +... ..+....+. ++. +.+- +.+ ..
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~---e~~~~~~i~~~~~~~~~~~l~g~~sL~el~a 256 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKD---ELAMVNEIAQGCQTPRVTSLAGKLTLPQLAA 256 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHH---HHHHHHHHHhhCCCCcccccCCCCCHHHHHH
Confidence 3457778888754 457788888888887667776665432210 1111 333333332 222 3333 233 35
Q ss_pred HhhcccccccccccCchhHHHHHhhCCceecc
Q 011832 359 VLAHQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 359 lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
+++++++ +|+. -.|.++=|.+.|+|+|.+
T Consensus 257 li~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 257 LIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 8888887 9987 788999999999999986
No 140
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.30 E-value=5.7 Score=38.77 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=59.9
Q ss_pred CCeEEEEEeccc--c--ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcC----Cc-eEeecc--C
Q 011832 288 VRSVLYVSFGSI--T--LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKE----RG-LLVSWV--P 355 (476)
Q Consensus 288 ~~~~I~vs~Gs~--~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~----nv-~~~~~~--p 355 (476)
+++.|.+..|+. . ..+.+.+.++++.+...+.++++.-+.+ +.+. ..+.+.++. ++ -+.+-. .
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~-----e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~ 253 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAK-----DHEAGNEILAALNTEQQAWCRNLAGETQLE 253 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHH-----hHHHHHHHHHhcccccccceeeccCCCCHH
Confidence 456888888874 2 5677888888888876667766543322 1112 333333322 12 233332 3
Q ss_pred h-HHHhhcccccccccccCchhHHHHHhhCCceecc
Q 011832 356 Q-EEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 356 q-~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
+ ..+++++++ ||+. -.|-++=|.+.|+|+|.+
T Consensus 254 el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 254 QAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 3 358888887 8874 567899999999999876
No 141
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=7.1 Score=37.30 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCC
Q 011832 3 EKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRA 82 (476)
Q Consensus 3 ~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 82 (476)
.+.++.|++++..|--||--.|.-=|..|++.|.+|++++.-.... . +.+-+.|+++++.++. ++..+..+
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p-~-------e~l~~hprI~ih~m~~-l~~~~~~p 78 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIP-L-------EELLNHPRIRIHGMPN-LPFLQGGP 78 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCC-h-------HHHhcCCceEEEeCCC-CcccCCCc
Confidence 3466789999999999999999999999999999999998733211 1 2223456799998873 22211111
Q ss_pred CCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCC-cchHHHHHHH----cCCCeEEEecCchHH
Q 011832 83 GDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDAC-MEFVVDVATE----LEIPVIHFRAISACS 145 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~-~~~~~~vA~~----l~iP~i~~~~~~~~~ 145 (476)
.-+.-.+..+... ...+-.++.. .++|.|++-.- ......++.- .|...++=|....+.
T Consensus 79 -~~~~l~lKvf~Qf-l~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 79 -RVLFLPLKVFWQF-LSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred -hhhhhHHHHHHHH-HHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 0111111111111 1223334443 37788876543 3344444433 467777777655544
No 142
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.33 E-value=4.6 Score=41.07 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=66.9
Q ss_pred eeccChHH---Hhhccccccccc---ccCch-hHHHHHhhCCc----eeccCCcccchhhHHHHHhhhcceeecccccCH
Q 011832 351 VSWVPQEE---VLAHQAVAGFLT---HSGWN-STLESIVAGVP----MICWPYFADQQINSRFVSEVWNLGLDMKDVCDR 419 (476)
Q Consensus 351 ~~~~pq~~---lL~~~~~~~~I~---HGG~~-s~~eal~~GvP----~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 419 (476)
...+|+.+ +++.+|+ |+. +=|+| ++.||+++|+| +|+--+.+- +..+ +-|..+. ..+.
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVn-P~d~ 409 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVN-PYDI 409 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEEC-CCCH
Confidence 34566665 5778888 664 34655 78899999999 555544332 2222 3355554 4589
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011832 420 NVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIK 470 (476)
Q Consensus 420 ~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 470 (476)
+.++++|.++|+...++-+++.+++.+...+ .+...-+++++++|.
T Consensus 410 ~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 410 DGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 9999999999983113445555555555433 566777888888764
No 143
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.21 E-value=8.7 Score=37.28 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=63.6
Q ss_pred CeEEEEEec-ccc---ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeec--cCh-HHHhh
Q 011832 289 RSVLYVSFG-SIT---LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSW--VPQ-EEVLA 361 (476)
Q Consensus 289 ~~~I~vs~G-s~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~--~pq-~~lL~ 361 (476)
++.|.++.| +.. ..+.+.+.++++.+.+.+.++++..+.+ +.+..+.+.+..+..+.+..- +.| ..++.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~----e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~ 250 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPD----EEERAEEIAKGLPNAVILAGKTSLEELAALIA 250 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChH----HHHHHHHHHHhcCCccccCCCCCHHHHHHHHh
Confidence 568999999 442 6788999999999999886665554432 111225555555554434333 333 34777
Q ss_pred cccccccccccCchhHHHHHhhCCceecc
Q 011832 362 HQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
++++ +|+ .-.|-++=|.+.|+|+|++
T Consensus 251 ~a~l--~I~-~DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 251 GADL--VIG-NDSGPMHLAAALGTPTIAL 276 (334)
T ss_pred cCCE--EEc-cCChHHHHHHHcCCCEEEE
Confidence 8886 665 4567899999999999987
No 144
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.74 E-value=9.6 Score=36.53 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=39.8
Q ss_pred ChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccchh----hHHHHHhhhcceeecc
Q 011832 355 PQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQI----NSRFVSEVWNLGLDMK 414 (476)
Q Consensus 355 pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~----na~~v~~~~G~G~~~~ 414 (476)
|...+|+.++. .+||---.+-+.||+..|+|+.++|.-. +.. -.+.+ ++.|+-..+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 67789998887 4555556777899999999999999876 322 22244 3446655554
No 145
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=92.47 E-value=2.4 Score=43.17 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=60.6
Q ss_pred EeeccChHH---Hhhccccccccc---ccCch-hHHHHHhhCCc---eeccCCcccchhhHHHHHhhhcceeecccccCH
Q 011832 350 LVSWVPQEE---VLAHQAVAGFLT---HSGWN-STLESIVAGVP---MICWPYFADQQINSRFVSEVWNLGLDMKDVCDR 419 (476)
Q Consensus 350 ~~~~~pq~~---lL~~~~~~~~I~---HGG~~-s~~eal~~GvP---~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 419 (476)
+.+++++.+ +++.+++ ||. +-|+| ++.||+++|+| .|++.-.+--. +...-|..++ .-+.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~-------~~~~~g~lv~-p~d~ 414 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAA-------EELSGALLVN-PYDI 414 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccch-------hhcCCCEEEC-CCCH
Confidence 346777765 5878888 663 34554 77999999999 33333211110 1112244443 3588
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011832 420 NVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDI 469 (476)
Q Consensus 420 ~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 469 (476)
+.++++|.++|++..+.-++..++..+... .-+...-+++++++|
T Consensus 415 ~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPLEERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 999999999998411122222222232322 356677778877765
No 146
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.35 E-value=2.3 Score=36.63 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=54.2
Q ss_pred hCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCC--CCCCCCCCCCCcHHHHHHHHHhhchHHHHHHHhcCCC
Q 011832 33 LAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISD--GLPADHPRAGDQLMEMFDSLSLNTRPLLKQMLIDTSP 110 (476)
Q Consensus 33 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 110 (476)
++||+|++++.... .... +.++...+.. ....+...-..++...... ...+...+.+|.++ ..
T Consensus 1 q~gh~v~fl~~~~~-~~~~------------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~r-g~av~~a~~~L~~~-Gf 65 (171)
T PF12000_consen 1 QRGHEVVFLTERKR-PPIP------------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLR-GQAVARAARQLRAQ-GF 65 (171)
T ss_pred CCCCEEEEEecCCC-CCCC------------CCcEEEEeCCCCCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHc-CC
Confidence 58999999996433 2211 2355555532 1111111111222222211 22334455555555 46
Q ss_pred CceEEEECCCcchHHHHHHHc-CCCeEEEec
Q 011832 111 PVSCIIGDACMEFVVDVATEL-EIPVIHFRA 140 (476)
Q Consensus 111 ~~DlvI~D~~~~~~~~vA~~l-~iP~i~~~~ 140 (476)
.||+||...-.-.++.+-+.+ +.|.+.+.-
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 899999998888889999999 899999854
No 147
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=91.99 E-value=2.6 Score=38.97 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAG 83 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 83 (476)
+.++||||+.-=-+. |---+..|+++|.+.| +|+++.|.......-.... ....+++..+...-....+...
T Consensus 2 ~~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait------~~~pl~~~~~~~~~~~~~y~v~ 73 (257)
T PRK13932 2 QDKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMT------LGVPLRIKEYQKNNRFFGYTVS 73 (257)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCccccc------CCCCeEEEEEccCCCceEEEEc
Confidence 456799887762222 2234778899998888 7999998766443322221 1122444443210000001111
Q ss_pred CcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECC----------Ccc---hHHHHHHHcCCCeEEEec
Q 011832 84 DQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDA----------CME---FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~----------~~~---~~~~vA~~l~iP~i~~~~ 140 (476)
.++..- ..-.+..++. . +||+||+-. ++. .|+.-|..+|||.|.+|.
T Consensus 74 GTPaDC-------V~lal~~~~~-~--~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 74 GTPVDC-------IKVALSHILP-E--KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred CcHHHH-------HHHHHHhhcC-C--CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 122111 1222333432 2 689988742 223 445557778999999986
No 148
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=91.60 E-value=2.2 Score=39.10 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=61.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
|||++.-= -.=|---...|++.|. .+++|+++.|..++.........+. -++...+.. ..+....++.
T Consensus 1 mrILlTND-DGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~------Plr~~~~~~----~~~av~GTPa 68 (252)
T COG0496 1 MRILLTND-DGIHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHE------PLRVRQVDN----GAYAVNGTPA 68 (252)
T ss_pred CeEEEecC-CccCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccccccc------CceeeEecc----ceEEecCChH
Confidence 56665541 1123444778888888 9999999999777554433222101 122222211 0111111111
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEEC----------CCcc---hHHHHHHHcCCCeEEEecC
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGD----------ACME---FVVDVATELEIPVIHFRAI 141 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D----------~~~~---~~~~vA~~l~iP~i~~~~~ 141 (476)
....-.+..++++. .||+||+- .++. .|+.=|..+|||.|.+|..
T Consensus 69 -------DCV~lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 69 -------DCVILGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred -------HHHHHHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 11133455666554 68998873 2333 4445577899999999764
No 149
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=91.33 E-value=3.2 Score=38.31 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=57.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecC-CCCCCCCCCCCCcH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTIS-DGLPADHPRAGDQL 86 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-~~~~~~~~~~~~~~ 86 (476)
||||+.-=-+. |---...|+++|.+ +|+|+++.|..++....... .....++...+. ++.....+....++
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~si------t~~~pl~~~~~~~~~~~~~~~~v~GTP 72 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSI------TIYEPIIIKEVKLEGINSKAYSISGTP 72 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccc------cCCCCeEEEeeccCCCCccEEEECCcH
Confidence 57776652111 11227888888865 68999999876644322221 111123333332 10000001111111
Q ss_pred HHHHHHHHhhchHHHHHHHhcCCCCceEEEEC----------CCcc---hHHHHHHHcCCCeEEEec
Q 011832 87 MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGD----------ACME---FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 87 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D----------~~~~---~~~~vA~~l~iP~i~~~~ 140 (476)
.. ...-.+..++. .+||+||+- .++. .|+.-|..+|||.|.+|.
T Consensus 73 aD-------cV~lal~~l~~---~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 73 AD-------CVRVALDKLVP---DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred HH-------HHHHHHHHhcC---CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 11 11222334432 378999874 3333 445557778999999986
No 150
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.27 E-value=3.8 Score=42.37 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=53.6
Q ss_pred CCceEeeccChH---HHhhccccccccccc---CchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCH
Q 011832 346 ERGLLVSWVPQE---EVLAHQAVAGFLTHS---GWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDR 419 (476)
Q Consensus 346 ~nv~~~~~~pq~---~lL~~~~~~~~I~HG---G~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 419 (476)
+.|.+.++.... ..+.+..+ +|.-+ |.++..||+.+|+|+| .+.....| +...=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe---CCH
Confidence 567788888832 46666555 88766 7889999999999999 33334444 443345444 378
Q ss_pred HHHHHHHHHHHhH
Q 011832 420 NVVEKMVNDLMVE 432 (476)
Q Consensus 420 ~~l~~~i~~~l~~ 432 (476)
.+|.++|..+|.+
T Consensus 476 ~~l~~al~~~L~~ 488 (519)
T TIGR03713 476 SELLKALDYYLDN 488 (519)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999985
No 151
>PRK14099 glycogen synthase; Provisional
Probab=91.19 E-value=7 Score=40.14 Aligned_cols=133 Identities=8% Similarity=0.064 Sum_probs=68.7
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHh---cCCceEEEECCCCCCCchhhHHHHHHhhcCCc-eEeeccChH-HHh-hccc
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVD---SKQRFLWVIRPDSVIGEGDALAELVEGTKERG-LLVSWVPQE-EVL-AHQA 364 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv-~~~~~~pq~-~lL-~~~~ 364 (476)
+++...|... +...+..+++++.. .+.+++..-.++. ...+.+..+.+..++++ .+.+|-... .++ +.+|
T Consensus 296 ~li~~VgRL~--~~KG~d~Li~A~~~l~~~~~~lvivG~G~~--~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aD 371 (485)
T PRK14099 296 LLLGVISRLS--WQKGLDLLLEALPTLLGEGAQLALLGSGDA--ELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGAD 371 (485)
T ss_pred cEEEEEecCC--ccccHHHHHHHHHHHHhcCcEEEEEecCCH--HHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCC
Confidence 4555566665 23334445555543 3455555543220 00112334444456665 456663332 233 4577
Q ss_pred cccccc---ccCch-hHHHHHhhCCceeccCCcc--cchhhHHHHHhhh--cceeecccccCHHHHHHHHHHHH
Q 011832 365 VAGFLT---HSGWN-STLESIVAGVPMICWPYFA--DQQINSRFVSEVW--NLGLDMKDVCDRNVVEKMVNDLM 430 (476)
Q Consensus 365 ~~~~I~---HGG~~-s~~eal~~GvP~l~iP~~~--DQ~~na~~v~~~~--G~G~~~~~~~~~~~l~~~i~~~l 430 (476)
+ |+. +=|+| +.+||+++|+|.|+....+ |--.......+.. +.|..++ .-+.+.|.++|.+++
T Consensus 372 i--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~-~~d~~~La~ai~~a~ 442 (485)
T PRK14099 372 A--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS-PVTADALAAALRKTA 442 (485)
T ss_pred E--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC-CCCHHHHHHHHHHHH
Confidence 7 664 44554 6789999997766654422 3221111110111 4677765 358899999999743
No 152
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.86 E-value=1.2 Score=37.90 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=50.6
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhh
Q 011832 17 CQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLN 96 (476)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (476)
..|=-.-...|+++|+++||+|+++++......... ...... .... .........+..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~--------------~~~~~~-~~~~---~~~~~~~~~~~~---- 68 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE--------------LVKIFV-KIPY---PIRKRFLRSFFF---- 68 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST--------------EEEE----TT----SSTSS--HHHHH----
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh--------------ccceee-eeec---ccccccchhHHH----
Confidence 345667789999999999999999988533211100 001110 0000 001111111111
Q ss_pred chHHHHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 97 TRPLLKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 97 ~~~~l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
...+..++++. +||+|-+..... +....+-. ++|.+......
T Consensus 69 -~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 69 -MRRLRRLIKKE--KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp -HHHHHHHHHHH--T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred -HHHHHHHHHHc--CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 23466777766 889995444333 33434444 99999986643
No 153
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.24 E-value=1.1 Score=37.29 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=43.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcc
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYT 54 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (476)
+++.||++.+.++-+|-.-..-++..|.++|++|++++.....+.+.+..
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a 50 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA 50 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
Confidence 46889999999999999999999999999999999999876666655443
No 154
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.21 E-value=2.6 Score=35.67 Aligned_cols=42 Identities=24% Similarity=0.182 Sum_probs=36.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
+..|||++...|+.|-.--.+.+++.|.++|++|-=+.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 457999999999999999999999999999999876555444
No 155
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.09 E-value=3.4 Score=35.67 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=25.0
Q ss_pred CceEEEECCCcc--hHHHHHHHc------CCCeEEEec
Q 011832 111 PVSCIIGDACME--FVVDVATEL------EIPVIHFRA 140 (476)
Q Consensus 111 ~~DlvI~D~~~~--~~~~vA~~l------~iP~i~~~~ 140 (476)
+||+||+..-.. +...+|..+ |.++|.+-+
T Consensus 92 rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 92 RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 799999998887 446678888 999999865
No 156
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.96 E-value=9.9 Score=41.66 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHhhcccccccccc---cCch-hHHHHHhhCCc---eeccCCcccchhhHHHHHhhhc-ceeecccccCHHHHHHHHHHH
Q 011832 358 EVLAHQAVAGFLTH---SGWN-STLESIVAGVP---MICWPYFADQQINSRFVSEVWN-LGLDMKDVCDRNVVEKMVNDL 429 (476)
Q Consensus 358 ~lL~~~~~~~~I~H---GG~~-s~~eal~~GvP---~l~iP~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~~l~~~i~~~ 429 (476)
++++.+++ |+.- -|+| +..|++++|+| ++++.-++ ..+. .+| -|+.+. ..+.+.++++|.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allVn-P~D~~~lA~AI~~a 440 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLVN-PWNITEVSSAIKEA 440 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEEC-CCCHHHHHHHHHHH
Confidence 57778888 6644 4776 77899999999 44444221 1111 134 355555 46899999999999
Q ss_pred Hh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 011832 430 MV-ERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKMMS 473 (476)
Q Consensus 430 l~-~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~ 473 (476)
|+ + .+.-+++.+++.+..++ .+...-.++|++.+.+..
T Consensus 441 L~m~-~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 441 LNMS-DEERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HhCC-HHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 99 4 12334444445444443 355677788888776654
No 157
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.85 E-value=24 Score=33.08 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=35.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcchhh
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAG--LKVTFLNSKHNHER 49 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~ 49 (476)
||+++-..+.|++.-+.++.++|.++. -+|++++.+.+..-
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l 43 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPL 43 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHH
Confidence 689999999999999999999999985 89999999655443
No 158
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.83 E-value=4.3 Score=37.63 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=54.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
|||+++. ++|. -..|++.|.++||+|+..+............+ ..... .+.++
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g---------~~~v~-------~g~l~------ 53 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ---------ALTVH-------TGALD------ 53 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCccccccccC---------CceEE-------ECCCC------
Confidence 5777775 3332 67899999999999998776443221111100 00100 00000
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchH-------HHHHHHcCCCeEEEe
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFV-------VDVATELEIPVIHFR 139 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~-------~~vA~~l~iP~i~~~ 139 (476)
...+.+++.+. ++|+|| |...+.+ ..+++.+|||++.|-
T Consensus 54 ----------~~~l~~~l~~~--~i~~VI-DAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 54 ----------PQELREFLKRH--SIDILV-DATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred ----------HHHHHHHHHhc--CCCEEE-EcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 22356777776 789766 4455533 347899999999983
No 159
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.04 E-value=27 Score=32.81 Aligned_cols=130 Identities=21% Similarity=0.290 Sum_probs=72.2
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhcCCc----eEEEECCCCCCCchhhHHHHHHhh--cCCceEeeccCh---HHHhh
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDSKQR----FLWVIRPDSVIGEGDALAELVEGT--KERGLLVSWVPQ---EEVLA 361 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~----~i~~~~~~~~~~~~~~l~~~~~~~--~~nv~~~~~~pq---~~lL~ 361 (476)
.+++..|.... ......+++++..+... -++.++..... ...+..+.... .+++.+..++|. ..++.
T Consensus 200 ~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 275 (381)
T COG0438 200 FVVLYVGRLDP--EKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER--REELEKLAKKLGLEDNVKFLGYVPDEELAELLA 275 (381)
T ss_pred eEEEEeeccCh--hcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc--HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHH
Confidence 46666676432 34445555555544321 23333322110 01122222222 367888899882 34676
Q ss_pred cccccccccc---cCchh-HHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 362 HQAVAGFLTH---SGWNS-TLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 362 ~~~~~~~I~H---GG~~s-~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
.+++ ++.- .|.|. +.||+++|+|++.... ......+ ...+.|. +....+.+.+.+++..++++
T Consensus 276 ~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 276 SADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPPGDVEELADALEQLLED 342 (381)
T ss_pred hCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCCCCHHHHHHHHHHHhcC
Confidence 6766 5554 35544 5999999999966543 3233334 4422466 33223789999999999986
No 160
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=86.83 E-value=16 Score=36.98 Aligned_cols=136 Identities=10% Similarity=0.120 Sum_probs=83.4
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhcCC-ceEEEECCCCCCCchhhHHHHHHhhcCCce-EeeccC-h-HHHhhcc
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDSKQ-RFLWVIRPDSVIGEGDALAELVEGTKERGL-LVSWVP-Q-EEVLAHQ 363 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~-~~~~~p-q-~~lL~~~ 363 (476)
...+++++ +...++.+....+.++. .+=.....+ . ...|..+ ++. +|+. ..++.+ + .+++..|
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te-~---s~kL~~L-~~y-~nvvly~~~~~~~l~~ly~~~ 348 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE-M---SSKLMSL-DKY-DNVKLYPNITTQKIQELYQTC 348 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc-c---cHHHHHH-Hhc-CCcEEECCcChHHHHHHHHhc
Confidence 34467666 35666666666666654 332222211 0 1245555 445 5555 557677 3 4699999
Q ss_pred cccccccccC--chhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHH-HHHHH
Q 011832 364 AVAGFLTHSG--WNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKE-EFMRA 440 (476)
Q Consensus 364 ~~~~~I~HGG--~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~-~y~~~ 440 (476)
++-+-|+||+ ..++.||+.+|+|++..=... .+...+ .. |-... .-+.+++.++|.++|++ + .++++
T Consensus 349 dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~---~~~~~i-~~---g~l~~-~~~~~~m~~~i~~lL~d--~~~~~~~ 418 (438)
T TIGR02919 349 DIYLDINHGNEILNAVRRAFEYNLLILGFEETA---HNRDFI-AS---ENIFE-HNEVDQLISKLKDLLND--PNQFREL 418 (438)
T ss_pred cEEEEccccccHHHHHHHHHHcCCcEEEEeccc---CCcccc-cC---Cceec-CCCHHHHHHHHHHHhcC--HHHHHHH
Confidence 9999999976 569999999999999864321 112222 22 33332 34789999999999996 4 44544
Q ss_pred HHHHHH
Q 011832 441 ADRMAT 446 (476)
Q Consensus 441 a~~~~~ 446 (476)
..+-++
T Consensus 419 ~~~q~~ 424 (438)
T TIGR02919 419 LEQQRE 424 (438)
T ss_pred HHHHHH
Confidence 444333
No 161
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.79 E-value=9.7 Score=35.02 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccCH-HHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 8 PHILIFPLPCQSHM-NSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 8 ~~il~~~~~~~gH~-~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
||||+.- --|-. --..+|+++|.+.| +|+++.+.......
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSGT 41 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCcccc
Confidence 5666543 12222 33778999999988 89999997665443
No 162
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=86.34 E-value=3.1 Score=36.78 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhhchHHH
Q 011832 22 NSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLNTRPLL 101 (476)
Q Consensus 22 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (476)
.-...+...++.+|-+|.|+++......+.+.... . ....-+...+-.|..............+.......+
T Consensus 43 ~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~---~-----~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~ 114 (193)
T cd01425 43 RLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAE---R-----TGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKL 114 (193)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH---H-----cCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555667778889999999997554433322210 0 011111122333333333333333322222111223
Q ss_pred HHHHh---cCCCCceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 102 KQMLI---DTSPPVSCII-GDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 102 ~~ll~---~~~~~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
...+. .....||+|| .|.... .++.=|.++|||+|.+.-+.
T Consensus 115 ~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 115 EKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 33332 2224789988 454444 66777999999999997654
No 163
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=85.96 E-value=34 Score=32.99 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=61.1
Q ss_pred CCeEEEEEeccc--c--ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCce-Eeec--cCh-HHH
Q 011832 288 VRSVLYVSFGSI--T--LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGL-LVSW--VPQ-EEV 359 (476)
Q Consensus 288 ~~~~I~vs~Gs~--~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~-~~~~--~pq-~~l 359 (476)
.++.|.+..|+. . ..+.+.+.++++.+...+.+++...++++ .+....+.+..+.++. +.+- +.+ ..+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e----~~~~~~i~~~~~~~~~~l~g~~sL~el~al 248 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKD----HPAGNEIEALLPGELRNLAGETSLDEAVDL 248 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhh----HHHHHHHHHhCCcccccCCCCCCHHHHHHH
Confidence 456888888874 2 56778888888888766667665533221 1111344344444432 3232 233 358
Q ss_pred hhcccccccccccCchhHHHHHhhCCceecc
Q 011832 360 LAHQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 360 L~~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
++++++ +|+. -.|-++=|.+.|+|+|++
T Consensus 249 i~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 249 IALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 888887 8875 457899999999999876
No 164
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.16 E-value=1.5 Score=35.33 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=26.7
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 8 PHILIFPLPCQS---HMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 8 ~~il~~~~~~~g---H~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
|||+|+.-|-.+ .-....+++.+-.+|||+|.+++..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 788888876544 4457899999999999999999984
No 165
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=85.04 E-value=16 Score=33.79 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=25.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHER 49 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 49 (476)
||||+.-=-+. |---..+|+++|. ++|+|+++.|...+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~~~~V~VvAP~~~qSg 40 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-EKHEVFVVAPDKERSA 40 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-hCCcEEEEccCCCCcc
Confidence 56766652222 2233677888886 4689999999766543
No 166
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.54 E-value=5.5 Score=37.28 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=49.7
Q ss_pred HHHHHHHHHhc-CCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHHHhhC
Q 011832 307 LIEFWHGLVDS-KQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAG 384 (476)
Q Consensus 307 ~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~G 384 (476)
...+.+..+.. +.+++++.-+.......... ....+ .+..+.+.+-++-.+||.+++. +||-.+ ..-.||+.+|
T Consensus 143 ~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~g 218 (269)
T PF05159_consen 143 LDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHG 218 (269)
T ss_pred HHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcC
Confidence 33344445544 45666665432221111111 22111 3344556677888999999997 777765 4778999999
Q ss_pred CceeccCC
Q 011832 385 VPMICWPY 392 (476)
Q Consensus 385 vP~l~iP~ 392 (476)
+|++++..
T Consensus 219 kpVi~~G~ 226 (269)
T PF05159_consen 219 KPVIVFGR 226 (269)
T ss_pred CceEEecC
Confidence 99999864
No 167
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=83.16 E-value=2.3 Score=34.15 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=37.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIR 52 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (476)
||++.+.++-.|.....-++..|..+|++|..+......+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 58899999999999999999999999999988887554444433
No 168
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=82.71 E-value=23 Score=32.97 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=27.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHER 49 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 49 (476)
||||+.-=-+. |---+..|++.|.+.| +|+++.|...+..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSA 40 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcc
Confidence 56666552222 3345788999998888 7999998766443
No 169
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=82.66 E-value=21 Score=32.88 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=58.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
||||+.-==+. |---+.+|+++|.+. |+|+++.|...+........ ....+++..+.+. .+....++.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait------~~~pl~~~~~~~~----~~~v~GTPa 68 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLT------LTRPLRVEKVDNG----FYAVDGTPT 68 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCccccc------CCCCeEEEEecCC----eEEECCcHH
Confidence 56666542121 223378899999988 79999999766443322221 1112444443211 011111111
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECC----------Ccc---hHHHHHHHcCCCeEEEec
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDA----------CME---FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~----------~~~---~~~~vA~~l~iP~i~~~~ 140 (476)
. ...-.+..++. . +||+||+-. ++. .++.-|..+|||.|.+|.
T Consensus 69 D-------cV~~gl~~l~~-~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 69 D-------CVHLALNGLLD-P--KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred H-------HHHHHHHhhcc-C--CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1 11222333332 2 789988742 333 444557778999999976
No 170
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=81.11 E-value=1.9 Score=37.22 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=25.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
|||.++. +.|++- ..|+++..+|||+||-++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 7888876 444443 46899999999999999963
No 171
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.41 E-value=5.3 Score=41.38 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=46.8
Q ss_pred ChHHHhhccccccccc---ccCch-hHHHHHhhCCceeccCCcc-cchhhHHHHHhhh-cceeeccc------ccCHHHH
Q 011832 355 PQEEVLAHQAVAGFLT---HSGWN-STLESIVAGVPMICWPYFA-DQQINSRFVSEVW-NLGLDMKD------VCDRNVV 422 (476)
Q Consensus 355 pq~~lL~~~~~~~~I~---HGG~~-s~~eal~~GvP~l~iP~~~-DQ~~na~~v~~~~-G~G~~~~~------~~~~~~l 422 (476)
+..+++..|++ ||. +=|+| ++.||+++|+|+|+....+ ... +..++..- ..|+.+.. .-+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~--v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCF--MEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhh--hHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 45678888888 554 45655 8999999999999987632 111 12221221 15666641 2356788
Q ss_pred HHHHHHHHh
Q 011832 423 EKMVNDLMV 431 (476)
Q Consensus 423 ~~~i~~~l~ 431 (476)
++++.++++
T Consensus 543 a~~m~~~~~ 551 (590)
T cd03793 543 TQYMYEFCQ 551 (590)
T ss_pred HHHHHHHhC
Confidence 888888876
No 172
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=80.06 E-value=26 Score=34.17 Aligned_cols=96 Identities=14% Similarity=0.226 Sum_probs=60.0
Q ss_pred CeEEEEEecccc---ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhc-CC-ceEeec--cCh-HHH
Q 011832 289 RSVLYVSFGSIT---LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTK-ER-GLLVSW--VPQ-EEV 359 (476)
Q Consensus 289 ~~~I~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~-~n-v~~~~~--~pq-~~l 359 (476)
++.|.+..|+.. ..+.+.+.++++.+...+.++++..+++.. +... ..+.+... .+ +.+.+- +.+ ..+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~---e~~~~~~i~~~~~~~~~~~l~g~~sL~el~al 259 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKD---DLACVNEIAQGCQTPPVTALAGKTTFPELGAL 259 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChH---HHHHHHHHHHhcCCCccccccCCCCHHHHHHH
Confidence 457888888763 567788888888887777777666443211 0011 22222211 12 223333 333 358
Q ss_pred hhcccccccccccCchhHHHHHhhCCceecc
Q 011832 360 LAHQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 360 L~~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
++++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 260 i~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 260 IDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 888887 8875 457899999999999876
No 173
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=79.36 E-value=3.6 Score=40.55 Aligned_cols=108 Identities=11% Similarity=0.168 Sum_probs=64.4
Q ss_pred cCCceEe-eccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecc----c--cc
Q 011832 345 KERGLLV-SWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMK----D--VC 417 (476)
Q Consensus 345 ~~nv~~~-~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~----~--~~ 417 (476)
.++++.+ +..+-.++|..+++ +||-- .+.+.|.+..+.|++....-.|.+.. +.|.-.... . .-
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~rg~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------ERGFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TSSBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------ccCCCCchHhhCCCceeC
Confidence 4566654 44567899999998 99987 45789999999999988766666522 224333331 1 34
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 011832 418 DRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLD 463 (476)
Q Consensus 418 ~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~ 463 (476)
+.++|.++|..++++ ...++++.++..+++-. ..+|.++.+.++
T Consensus 322 ~~~eL~~~i~~~~~~-~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~ 365 (369)
T PF04464_consen 322 NFEELIEAIENIIEN-PDEYKEKREKFRDKFFK-YNDGNSSERIVN 365 (369)
T ss_dssp SHHHHHHHHTTHHHH-HHHTHHHHHHHHHHHST-T--S-HHHHHHH
T ss_pred CHHHHHHHHHhhhhC-CHHHHHHHHHHHHHhCC-CCCchHHHHHHH
Confidence 789999999999884 13456666777777543 234444433333
No 174
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=79.35 E-value=35 Score=37.12 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=65.5
Q ss_pred EeeccChHH---Hhhcccccccccc---cCch-hHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHH
Q 011832 350 LVSWVPQEE---VLAHQAVAGFLTH---SGWN-STLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVV 422 (476)
Q Consensus 350 ~~~~~pq~~---lL~~~~~~~~I~H---GG~~-s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l 422 (476)
+.+++++.+ +++.+++ |+.- -|+| .+.|++++|+|-..+|...+--.=+..+ .-|+.++ ..+.+.+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~-P~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVN-PNDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEEC-CCCHHHH
Confidence 456788765 6777887 6543 3544 7899999977522222222111111122 2255554 3589999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 011832 423 EKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKMMS 473 (476)
Q Consensus 423 ~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~ 473 (476)
+++|.++|+...++.+++.+++.+..+ .-+..+-++++++.+.+..
T Consensus 419 a~ai~~~l~~~~~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 419 AAAIKRALEMPEEEQRERMQAMQERLR-----RYDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHH
Confidence 999999998311233444444444433 2466777888888877653
No 175
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=78.50 E-value=9.9 Score=34.04 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=34.1
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 9 HILIFPLP--CQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 9 ~il~~~~~--~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
+|.+++.+ +.|..-...+|+-.|+++|++|.++-...-...+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNL 46 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNL 46 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhh
Confidence 67777765 6699999999999999999999999886444433
No 176
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=78.41 E-value=9.4 Score=35.26 Aligned_cols=94 Identities=22% Similarity=0.320 Sum_probs=54.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
|||+++...+-| ..|++.|.++|+ |.+-+.-.....+.... .+...... +.+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~--------~~~~~v~~-------G~lg------ 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE--------LPGLEVRV-------GRLG------ 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc--------cCCceEEE-------CCCC------
Confidence 788888765555 479999999999 65544423322221110 00011110 1010
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHH-------HHHHHcCCCeEEEec
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVV-------DVATELEIPVIHFRA 140 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~-------~vA~~l~iP~i~~~~ 140 (476)
-...+.+++.+. ++|+|| |...+.+. .+|+.+|||++.|.-
T Consensus 54 ---------~~~~l~~~l~~~--~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 54 ---------DEEGLAEFLREN--GIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred ---------CHHHHHHHHHhC--CCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 134567777776 788876 55555443 468899999999843
No 177
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=78.23 E-value=59 Score=30.93 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=59.1
Q ss_pred CCce-EeeccChH---HHhhcccccccccc--cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecc-cccC
Q 011832 346 ERGL-LVSWVPQE---EVLAHQAVAGFLTH--SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMK-DVCD 418 (476)
Q Consensus 346 ~nv~-~~~~~pq~---~lL~~~~~~~~I~H--GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~-~~~~ 418 (476)
+|+. +.+++|.. ++|+.||+.-|+|+ =|.||+.-.+..|||+++- -+=++|.... ++ |+-+..+ +.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~-e~-gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT-EQ-GLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH-hC-CCeEEecCCccc
Confidence 6777 46888765 59999999777775 4899999999999999975 3344555555 54 7777544 4788
Q ss_pred HHHHHHHHHHHHh
Q 011832 419 RNVVEKMVNDLMV 431 (476)
Q Consensus 419 ~~~l~~~i~~~l~ 431 (476)
...+.++=+++..
T Consensus 281 ~~~v~e~~rql~~ 293 (322)
T PRK02797 281 EDIVREAQRQLAS 293 (322)
T ss_pred HHHHHHHHHHHHh
Confidence 8888777555444
No 178
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=77.75 E-value=16 Score=31.89 Aligned_cols=106 Identities=11% Similarity=0.119 Sum_probs=56.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCE--EEEEeCCcchhh-hhhcccccccccCCCCeeEEecCCCCCCCCCCCCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLK--VTFLNSKHNHER-LIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGD 84 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~--Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 84 (476)
|||+|+..++. ..+..+.+.|.+++|+ +..+.+...... ...... ..+....+... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~--------~~~~~~~~~~~----~----- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK--------NGIPAQVADEK----N----- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH--------TTHHEEEHHGG----G-----
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc--------CCCCEEecccc----C-----
Confidence 79999976555 5577778899999998 444433232222 111110 01111111100 0
Q ss_pred cHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEecC
Q 011832 85 QLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRAI 141 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~~ 141 (476)
+.. .....+.+.+.+++. +||++|+-.+.. ....+-...+..++-++++
T Consensus 61 -----~~~-~~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 -----FQP-RSENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -----SSS-HHHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -----CCc-hHhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000 011245566777777 889999877654 4455667777778888764
No 179
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=77.69 E-value=3 Score=34.11 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=31.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
|||++.-.|+.+=.. ...+.++|.++|++|.++.++.-
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcH
Confidence 688888888876666 99999999999999999998543
No 180
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=77.52 E-value=29 Score=31.61 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=25.2
Q ss_pred CceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 111 PVSCII-GDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 111 ~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
-||+++ +|+..- -|+.=|.++|||+|.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 489876 777766 67778999999999986543
No 181
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=77.50 E-value=23 Score=32.86 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=51.8
Q ss_pred HHHHHHHHHhC---CCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhhchHH
Q 011832 24 MLKLAEIFGLA---GLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLNTRPL 100 (476)
Q Consensus 24 ~l~La~~L~~r---GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (476)
+.+|++.|.+. |++|+++.|...+........ ....++...+.++ .+....++.. ...-.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT------~~~pl~~~~~~~~----~yav~GTPaD-------CV~la 78 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS------YTHPMMIAELGPR----RFAAEGSPAD-------CVLAA 78 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc------CCCCeEEEEeCCC----eEEEcCchHH-------HHHHH
Confidence 56677777663 479999999766443322221 1112454444311 1111122221 11223
Q ss_pred HHHHHhcCCCCceEEEE----------CCCcc---hHHHHHHHcCCCeEEEec
Q 011832 101 LKQMLIDTSPPVSCIIG----------DACME---FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 101 l~~ll~~~~~~~DlvI~----------D~~~~---~~~~vA~~l~iP~i~~~~ 140 (476)
+..++... +||+||+ |.++. .++.-|..+|||.|.+|.
T Consensus 79 l~~~~~~~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 79 LYDVMKDA--PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHhcCCC--CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 34444323 7899987 33333 344457778999999985
No 182
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=76.86 E-value=10 Score=36.40 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 110 PPVSCII-GDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 110 ~~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
..||+|| .|.... .++.=|.++|||+|.+.=+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 3689877 565555 77778999999999996554
No 183
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.82 E-value=4.3 Score=35.85 Aligned_cols=42 Identities=17% Similarity=0.006 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|.+.+||++.-.|+.|=+.-...+++.|.++||+|.++.++.
T Consensus 2 ~l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 2 SLKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 356778887776655544447999999999999999999854
No 184
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.40 E-value=56 Score=30.92 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=37.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
-++-+|.|...|+-|-=.-.-+|.++|..+||+|.++.-++.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 455688999999999999999999999999999999987654
No 185
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.91 E-value=35 Score=29.06 Aligned_cols=103 Identities=12% Similarity=0.096 Sum_probs=57.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHH
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLME 88 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (476)
-|.+++..+.|-....+.+|-..+.+|++|.++..-.... ..+.. ......+++.+.....+..... .+...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~---~~gE~-~~l~~l~~v~~~~~g~~~~~~~----~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW---KYGEL-KALERLPNIEIHRMGRGFFWTT----ENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC---ccCHH-HHHHhCCCcEEEECCCCCccCC----CChHH
Confidence 4677888899999999999999999999999944311100 00000 1222224577776654322211 11111
Q ss_pred HHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc
Q 011832 89 MFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME 122 (476)
Q Consensus 89 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~ 122 (476)
-... ....-...++.+.+. ++|+||.|....
T Consensus 76 ~~~~-a~~~~~~a~~~~~~~--~~dLlVLDEi~~ 106 (159)
T cd00561 76 DIAA-AAEGWAFAKEAIASG--EYDLVILDEINY 106 (159)
T ss_pred HHHH-HHHHHHHHHHHHhcC--CCCEEEEechHh
Confidence 1111 111223344555555 889999998776
No 186
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=74.40 E-value=31 Score=30.34 Aligned_cols=106 Identities=10% Similarity=0.035 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQ 85 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (476)
++-.|.+++..+.|-....+.+|-..+.+|++|.++-.-.... .++.. ......+.+.+.....+..... .+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~---~~GE~-~~l~~l~~v~~~~~g~~~~~~~----~~ 92 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW---STGER-NLLEFGGGVEFHVMGTGFTWET----QD 92 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC---ccCHH-HHHhcCCCcEEEECCCCCcccC----CC
Confidence 4557899999999999999999999999999999987532210 01100 1222223577776654333211 11
Q ss_pred HHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc
Q 011832 86 LMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME 122 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~ 122 (476)
...-... ....-....+.+.+. ++|+||.|....
T Consensus 93 ~~e~~~~-~~~~~~~a~~~l~~~--~ydlvVLDEi~~ 126 (191)
T PRK05986 93 RERDIAA-AREGWEEAKRMLADE--SYDLVVLDELTY 126 (191)
T ss_pred cHHHHHH-HHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 1111111 111123334555555 889999998775
No 187
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.09 E-value=26 Score=33.69 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=32.3
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFP-LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~-~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
+||++++ =|+.|-..-..++|-.|++.|++|.++++++-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 6787777 45669988899999999999999888888654
No 188
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=72.80 E-value=5.7 Score=39.99 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
.+.||||++..+++-| +|++.|.+-++-+.+++.+.|
T Consensus 2 ~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 2 QVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 4569999999999888 689999999876666666566
No 189
>PRK14099 glycogen synthase; Provisional
Probab=72.35 E-value=6.6 Score=40.34 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=31.0
Q ss_pred CCCEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 6 KSPHILIFPLP------CQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 6 ~~~~il~~~~~------~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
++|||++++.- +.|=-...-+|.++|+++||+|.++.|.+
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 68999998732 22333557789999999999999999854
No 190
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=72.04 E-value=20 Score=34.50 Aligned_cols=130 Identities=15% Similarity=0.038 Sum_probs=73.1
Q ss_pred eEEE-EEecccc--ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeec--cCh-HHHhhc
Q 011832 290 SVLY-VSFGSIT--LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSW--VPQ-EEVLAH 362 (476)
Q Consensus 290 ~~I~-vs~Gs~~--~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~--~pq-~~lL~~ 362 (476)
+.|. +..||.. ..+.+.+.++++.+...+.++++..+++. +.+. ..+.+.. .++.+.+- +.+ ..++++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~----e~~~~~~i~~~~-~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH----EEQRAKRLAEGF-PYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH----HHHHHHHHHccC-CcceecCCCCHHHHHHHHHh
Confidence 3444 4444433 46778888888888766667655434321 1122 3333322 23333332 333 358888
Q ss_pred ccccccccccCchhHHHHHhhCCceeccCCcccchhh------HHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 363 QAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQIN------SRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 363 ~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~n------a~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
+++ +|+. ..|.++=|.+.|+|+|++=--.|-..+ ...+ +- ++..+ ..++.+.+.++++++|+
T Consensus 254 a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~~--~~~cm-~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 254 AKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-RS--PGKSM-ADLSAETVFQKLETLIS 321 (322)
T ss_pred CCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-cC--CCccc-ccCCHHHHHHHHHHHhh
Confidence 887 8875 457899999999999987332222111 1111 10 01111 26889999999888764
No 191
>PRK12342 hypothetical protein; Provisional
Probab=71.48 E-value=29 Score=32.13 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCCceEEEECCCcc-h-----HHHHHHHcCCCeEEEecC
Q 011832 99 PLLKQMLIDTSPPVSCIIGDACME-F-----VVDVATELEIPVIHFRAI 141 (476)
Q Consensus 99 ~~l~~ll~~~~~~~DlvI~D~~~~-~-----~~~vA~~l~iP~i~~~~~ 141 (476)
..|.+.++.. +||+|++-..+. . +..+|+.||+|++.+...
T Consensus 99 ~~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 99 KALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 3455666665 699999865554 3 788999999999998653
No 192
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=71.19 E-value=11 Score=30.05 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=36.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIR 52 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (476)
|+++.+.+..-|-.-...++..|.++||+|.++......+.+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 78999999999999999999999999999999977554444443
No 193
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=70.87 E-value=3.9 Score=35.87 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCccCHH------------HHHHHHHHHHhCCCEEEEEeCCc
Q 011832 7 SPHILIFPLPCQSHMN------------SMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~------------p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
.+||++...|+.-.+. .-..||+++..|||+||++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4566666655554443 35789999999999999999863
No 194
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=70.10 E-value=44 Score=25.10 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhhchHHHHH
Q 011832 24 MLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLNTRPLLKQ 103 (476)
Q Consensus 24 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (476)
++.+++.|.+.|+++ ++|. ...+.+.+.+ +.....-.....+ .+.+.+
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~G-----------i~~~~~~~ki~~~-------------------~~~i~~ 49 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREAG-----------LPVKTLHPKVHGG-------------------ILAILD 49 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHCC-----------CcceeccCCCCCC-------------------CHHHHH
Confidence 468999999999998 3554 4555554433 2221110001000 012566
Q ss_pred HHhcCCCCceEEEECCCc---------chHHHHHHHcCCCeE
Q 011832 104 MLIDTSPPVSCIIGDACM---------EFVVDVATELEIPVI 136 (476)
Q Consensus 104 ll~~~~~~~DlvI~D~~~---------~~~~~vA~~l~iP~i 136 (476)
++++. ++|+||..... +.....|...+||++
T Consensus 50 ~i~~g--~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 50 LIKNG--EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HhcCC--CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 77776 89999985431 133456888999986
No 195
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=69.83 E-value=21 Score=32.64 Aligned_cols=97 Identities=10% Similarity=0.173 Sum_probs=54.7
Q ss_pred CCeEEEEEecccc---ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcCCce-Eeecc--Ch-HHH
Q 011832 288 VRSVLYVSFGSIT---LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKERGL-LVSWV--PQ-EEV 359 (476)
Q Consensus 288 ~~~~I~vs~Gs~~---~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~-~~~~~--pq-~~l 359 (476)
+++.|.+..|+.. ..+.+.+.++++.+.+.+.++++..+.... .... ..+.+..+.++. +..-. .+ ..+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ---EKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH---HHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH---HHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 4567888888764 567888999999998877666655443310 0111 233333333333 33222 23 358
Q ss_pred hhcccccccccccCchhHHHHHhhCCceecc
Q 011832 360 LAHQAVAGFLTHSGWNSTLESIVAGVPMICW 390 (476)
Q Consensus 360 L~~~~~~~~I~HGG~~s~~eal~~GvP~l~i 390 (476)
+.++++ +|+. ..|.++=|.+.|+|+|++
T Consensus 181 i~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 181 ISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 888887 7775 457899999999999998
No 196
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.68 E-value=18 Score=33.98 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=57.0
Q ss_pred Cce-EeeccChHHHhhcccccccccccCchhHHHHHhhCCceeccCCcccchhh--HHHHHhhhcceeecccccCHHHHH
Q 011832 347 RGL-LVSWVPQEEVLAHQAVAGFLTHSGWNSTLESIVAGVPMICWPYFADQQIN--SRFVSEVWNLGLDMKDVCDRNVVE 423 (476)
Q Consensus 347 nv~-~~~~~pq~~lL~~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~n--a~~v~~~~G~G~~~~~~~~~~~l~ 423 (476)
|-. +..|-...++|.++++ .|--.|- .+-+++=-|+|+|.+|-.+-|+.- |.|=.+-+|+.+.+-. -.+..=.
T Consensus 295 nc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~ 370 (412)
T COG4370 295 NCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAA 370 (412)
T ss_pred ceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHH
Confidence 444 4566677788877776 5544432 233457789999999999999864 4443344677766653 1222223
Q ss_pred HHHHHHHhHhHHHHHHHHHH
Q 011832 424 KMVNDLMVERKEEFMRAADR 443 (476)
Q Consensus 424 ~~i~~~l~~~~~~y~~~a~~ 443 (476)
.+.+++|.| +.+..+++.
T Consensus 371 ~~~q~ll~d--p~r~~air~ 388 (412)
T COG4370 371 QAVQELLGD--PQRLTAIRH 388 (412)
T ss_pred HHHHHHhcC--hHHHHHHHh
Confidence 334448887 777777763
No 197
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=68.77 E-value=84 Score=30.57 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=47.8
Q ss_pred HHHHhcC-CceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHH---HhhcccccccccccC----chhHHHHHhh
Q 011832 312 HGLVDSK-QRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEE---VLAHQAVAGFLTHSG----WNSTLESIVA 383 (476)
Q Consensus 312 ~a~~~~~-~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~---lL~~~~~~~~I~HGG----~~s~~eal~~ 383 (476)
..|.+.+ .+|+..-+++-..+-.+.++.+ .+-+++.+.+-+|+++ +|.+.++ |++-.= .-++.||..+
T Consensus 219 ~vc~~~p~vrfii~GDGPk~i~lee~lEk~--~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaSc 294 (426)
T KOG1111|consen 219 SVCDKHPEVRFIIIGDGPKRIDLEEMLEKL--FLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASC 294 (426)
T ss_pred HHHhcCCCeeEEEecCCcccchHHHHHHHh--hccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhC
Confidence 3344443 4776665444222212122322 2568899999999874 7888888 876543 3478999999
Q ss_pred CCceecc
Q 011832 384 GVPMICW 390 (476)
Q Consensus 384 GvP~l~i 390 (476)
|.|+|..
T Consensus 295 GL~VVsT 301 (426)
T KOG1111|consen 295 GLPVVST 301 (426)
T ss_pred CCEEEEe
Confidence 9999865
No 198
>PRK06849 hypothetical protein; Provisional
Probab=66.90 E-value=11 Score=37.36 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|+++|+|+++... ..-.+.+++.|.++||+|.++....
T Consensus 1 ~~~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4567899998633 2368999999999999999998754
No 199
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=66.63 E-value=20 Score=34.07 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=39.9
Q ss_pred HHhhcccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 358 EVLAHQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 358 ~lL~~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++-..+++ +|+-||=||+.+++.. ++|++.+- .- .+|... +.+.+++.++|.+++++
T Consensus 59 ~~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn--------~G------~lGFL~--~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 59 EIGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN--------HG------RLGFIT--DIPLDDMQETLPPMLAG 119 (291)
T ss_pred HhccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc--------CC------Cccccc--cCCHHHHHHHHHHHHcC
Confidence 33335666 9999999999999774 67888773 11 123222 46778888888888874
No 200
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.46 E-value=14 Score=32.86 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
++.||++.+.++-.|-....=++.-|..+|++|+.++..-..+.+.+.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 367999999999999999999999999999999998876555555444
No 201
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=66.42 E-value=79 Score=27.33 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=56.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
--|.+++..+.|-..-.+.+|-..+.+|++|.++-.-.... .++.. ...... .+.+.....++.... .+..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~---~~GE~-~~l~~~-~~~~~~~g~g~~~~~----~~~~ 76 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW---PNGER-AAFEPH-GVEFQVMGTGFTWET----QNRE 76 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc---ccChH-HHHHhc-CcEEEECCCCCeecC----CCcH
Confidence 35677777899999999999999999999997763211100 00000 011111 366666655443211 1111
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME 122 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~ 122 (476)
.-... ....-....+.+.+. ++|+||.|....
T Consensus 77 ~~~~~-~~~~~~~a~~~l~~~--~~DlvVLDEi~~ 108 (173)
T TIGR00708 77 ADTAI-AKAAWQHAKEMLADP--ELDLVLLDELTY 108 (173)
T ss_pred HHHHH-HHHHHHHHHHHHhcC--CCCEEEehhhHH
Confidence 11111 112223344555555 889999997764
No 202
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=66.04 E-value=14 Score=27.13 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+.-++++..+...|...+..+|+.|++.|..|..+-..
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~r 52 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHR 52 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 36788888899999999999999999999999876553
No 203
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=65.28 E-value=55 Score=25.97 Aligned_cols=86 Identities=14% Similarity=0.235 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhhchH
Q 011832 20 HMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLNTRP 99 (476)
Q Consensus 20 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (476)
+-.-+..+++.|.+.|.+|. +++...+.+.+.+. ....+.. ... ... .+ .+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~gi-----------~~~~v~~-~~~--~~~-~~------------~~ 61 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLENGI-----------PVTPVAW-PSE--EPQ-ND------------KP 61 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHcCC-----------CceEeee-ccC--CCC-CC------------ch
Confidence 55568899999999999883 44455565554432 1111110 000 000 00 15
Q ss_pred HHHHHHhcCCCCceEEEECCC---------cchHHHHHHHcCCCeE
Q 011832 100 LLKQMLIDTSPPVSCIIGDAC---------MEFVVDVATELEIPVI 136 (476)
Q Consensus 100 ~l~~ll~~~~~~~DlvI~D~~---------~~~~~~vA~~l~iP~i 136 (476)
.+.+++++. ++|+||.-.. .+.....|-.+|||++
T Consensus 62 ~i~~~i~~~--~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 62 SLRELLAEG--KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred hHHHHHHcC--CceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 577778876 8999998533 2344567999999996
No 204
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=64.99 E-value=52 Score=32.82 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=63.0
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 9 HILIFP-LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 9 ~il~~~-~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
+|++.. ..+.|-..-.+.|++.|.+||++|--+=..+.. . +=.|++.-.+.+..+.+..
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY------I----------DP~~H~~atG~~srNLD~~---- 61 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY------I----------DPGYHTAATGRPSRNLDSW---- 61 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc------c----------CchhhhHhhCCccCCCchh----
Confidence 455554 445699999999999999999999654332220 0 1133333323333222221
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCC------------cchHHHHHHHcCCCeEEEecCchHHHH
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDAC------------MEFVVDVATELEIPVIHFRAISACSFW 147 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~------------~~~~~~vA~~l~iP~i~~~~~~~~~~~ 147 (476)
.+..+.+++++...+...|+.|.+.. ....+.+|+.+|+|+|.+.-......+
T Consensus 62 -------mm~~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S 126 (451)
T COG1797 62 -------MMGEEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRS 126 (451)
T ss_pred -------hcCHHHHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHH
Confidence 11123344444433334455544321 235689999999999999876544433
No 205
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=64.71 E-value=8.7 Score=35.00 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNS------------MLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p------------~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||++...|+.-.+.| -.+||+.|.++||+|+++..
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEEC
Confidence 5666666655544433 47899999999999999975
No 206
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=64.60 E-value=63 Score=25.48 Aligned_cols=85 Identities=15% Similarity=0.199 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhhchH
Q 011832 20 HMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLNTRP 99 (476)
Q Consensus 20 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (476)
+=.-++.+|+.|.+.|+++ ++|. ...+.+.+.+ +....+. ..+.+ ..+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT~-gTa~~L~~~G-----------i~~~~v~-~~~~~------------------g~~ 57 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FATG-GTSRVLADAG-----------IPVRAVS-KRHED------------------GEP 57 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EECc-HHHHHHHHcC-----------CceEEEE-ecCCC------------------CCc
Confidence 4456889999999999988 3443 5555555433 3322221 00110 246
Q ss_pred HHHHHHhc-CCCCceEEEECC--Cc--------chHHHHHHHcCCCeEEE
Q 011832 100 LLKQMLID-TSPPVSCIIGDA--CM--------EFVVDVATELEIPVIHF 138 (476)
Q Consensus 100 ~l~~ll~~-~~~~~DlvI~D~--~~--------~~~~~vA~~l~iP~i~~ 138 (476)
.+.+++++ . ++|+||.-. .. +...-.|-.++||++.-
T Consensus 58 ~i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 58 TVDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 67788887 7 899999732 22 12234688899999873
No 207
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=64.45 E-value=20 Score=27.78 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=50.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
|||+++..+++-| +||+.|.+--.--.+++.+.|... .... ....+
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~G~-~~~~------------~~~~~---------------- 46 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNPGT-AELG------------KNVPI---------------- 46 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--TTG-GGTS------------EEE-S----------------
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCHHH-Hhhc------------eecCC----------------
Confidence 8999999999988 589999875433333333344211 1110 00000
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc---hHHHHHHHcCCCeEE
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME---FVVDVATELEIPVIH 137 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~---~~~~vA~~l~iP~i~ 137 (476)
...-...+.++..+. ++|++|+.+-.+ ...+..+..|||++.
T Consensus 47 ------~~~d~~~l~~~a~~~--~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 47 ------DITDPEELADFAKEN--KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp -------TT-HHHHHHHHHHT--TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred ------CCCCHHHHHHHHHHc--CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 001123355566666 899999987776 335666677888865
No 208
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=64.43 E-value=16 Score=32.34 Aligned_cols=49 Identities=8% Similarity=-0.006 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYT 54 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (476)
++.||++.+.++-.|-....-++.-|..+|.+|++++.....+.+.+..
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~ 131 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV 131 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999999999999999999999876666665443
No 209
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=64.29 E-value=5 Score=34.10 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=26.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
||.++..|..|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 577777766665 79999999999999999853
No 210
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=63.90 E-value=11 Score=34.97 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
+...++++..++.|-..-..++|.+|.++|+.|+|++.+.....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 456799999999999999999999999999999999996654444
No 211
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=63.89 E-value=1e+02 Score=27.12 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=30.4
Q ss_pred CEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFP--LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~--~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
||++.++ -++.|--.-...||..|+++|++|.++-....
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 6665555 44568888899999999999999999866543
No 212
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=63.76 E-value=11 Score=36.12 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+++|||+|+..|+.| ..+|..|+++||+|+++....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 346899999888776 457788999999999998743
No 213
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=63.28 E-value=32 Score=31.85 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=33.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 11 LIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 11 l~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
++..-|+.|......++|..++++|++|.++..+.. ..+...
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 444467889999999999999999999999998764 344333
No 214
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.23 E-value=56 Score=29.08 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccc
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAG 367 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 367 (476)
.+.++.|..|... ...+..|...+.++.++ ... . ...+..+.+ .+++.+.....+..-+..+++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~-~---~~~l~~l~~--~~~i~~~~~~~~~~~l~~adl-- 73 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE-L---TENLVKLVE--EGKIRWKQKEFEPSDIVDAFL-- 73 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC-C---CHHHHHHHh--CCCEEEEecCCChhhcCCceE--
Confidence 4568888877665 33455566667665544 322 1 112222221 134555555555667777787
Q ss_pred cccccCchhHHHHHh----hCCceeccCCcccchhhH-----HHHHhhhcceeecc--c--ccCHHHHHHHHHHHHhHhH
Q 011832 368 FLTHSGWNSTLESIV----AGVPMICWPYFADQQINS-----RFVSEVWNLGLDMK--D--VCDRNVVEKMVNDLMVERK 434 (476)
Q Consensus 368 ~I~HGG~~s~~eal~----~GvP~l~iP~~~DQ~~na-----~~v~~~~G~G~~~~--~--~~~~~~l~~~i~~~l~~~~ 434 (476)
+|.--+.-.+.+.++ .|+++-+ .|.+..+ ..+ ++-++-+.+. . -.-+..|++.|.+++..+.
T Consensus 74 ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~ 148 (202)
T PRK06718 74 VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDGASPKLAKKIRDELEALYDESY 148 (202)
T ss_pred EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCCCChHHHHHHHHHHHHHcchhH
Confidence 888777666666654 4454433 3443332 233 3323334443 1 2344678888888775333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011832 435 EEFMRAADRMATMARTT 451 (476)
Q Consensus 435 ~~y~~~a~~~~~~~~~~ 451 (476)
..|-+.+.++++.++..
T Consensus 149 ~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 149 ESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45667777777776653
No 215
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=63.06 E-value=1.1e+02 Score=27.32 Aligned_cols=145 Identities=12% Similarity=0.114 Sum_probs=77.6
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccc
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAG 367 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 367 (476)
.+++++|..|... ..-+..|...+.++.++-... ...+..+.+ ..++.+..--.+...|..+++
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~-----~~~l~~l~~--~~~i~~~~~~~~~~dl~~~~l-- 72 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL-----ESELTLLAE--QGGITWLARCFDADILEGAFL-- 72 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC-----CHHHHHHHH--cCCEEEEeCCCCHHHhCCcEE--
Confidence 4568888777554 223455666777766543321 112333322 235665433334556777776
Q ss_pred cccccCchhHHH-----HHhhCCce--eccCCcccchhhHHHHHhhhcceeecc--c--ccCHHHHHHHHHHHHhHhHHH
Q 011832 368 FLTHSGWNSTLE-----SIVAGVPM--ICWPYFADQQINSRFVSEVWNLGLDMK--D--VCDRNVVEKMVNDLMVERKEE 436 (476)
Q Consensus 368 ~I~HGG~~s~~e-----al~~GvP~--l~iP~~~DQ~~na~~v~~~~G~G~~~~--~--~~~~~~l~~~i~~~l~~~~~~ 436 (476)
+|..-|...+.+ |-..|+|+ +--|-.+| +..-..+ ++-++-+.+. . -.-+..|++.|.+++.++...
T Consensus 73 Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~ 150 (205)
T TIGR01470 73 VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGGAAPVLARLLRERIETLLPPSLGD 150 (205)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHH
Confidence 787777664433 44568888 33343333 2233334 4423434343 1 234577888888888632245
Q ss_pred HHHHHHHHHHHHHH
Q 011832 437 FMRAADRMATMART 450 (476)
Q Consensus 437 y~~~a~~~~~~~~~ 450 (476)
|-+.+.+++..+++
T Consensus 151 ~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 151 LATLAATWRDAVKK 164 (205)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666655
No 216
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=62.43 E-value=14 Score=28.31 Aligned_cols=84 Identities=11% Similarity=0.202 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhhchHHHHH
Q 011832 24 MLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLNTRPLLKQ 103 (476)
Q Consensus 24 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (476)
++++|+.|.+.|+++ +.++...+.+.+.+ +....+.+....++ ....+. .+.+
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~G-----------i~~~~v~~~~~~~~-~~~g~~-------------~i~~ 54 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEHG-----------IEVTEVVNKIGEGE-SPDGRV-------------QIMD 54 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHTT-------------EEECCEEHSTG--GGTHCH-------------HHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHcC-----------CCceeeeeecccCc-cCCchh-------------HHHH
Confidence 578999999999664 55555666665443 33222211111100 000001 5778
Q ss_pred HHhcCCCCceEEEECCCcchH---------HHHHHHcCCCeE
Q 011832 104 MLIDTSPPVSCIIGDACMEFV---------VDVATELEIPVI 136 (476)
Q Consensus 104 ll~~~~~~~DlvI~D~~~~~~---------~~vA~~l~iP~i 136 (476)
++++. +.|+||......-. ..+|...+||++
T Consensus 55 ~i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 55 LIKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 88887 99999987655421 346888889876
No 217
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=62.27 E-value=93 Score=29.01 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 6 KSPHILIFP--LPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 6 ~~~~il~~~--~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+..|++.++ .++.|--.-...||..|++.|++|.++-..
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 455665555 345587788899999999999999998664
No 218
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=60.71 E-value=19 Score=29.01 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=37.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLI 51 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 51 (476)
||++.+.++-.|..-..-++.-|..+|++|..+......+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~ 43 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIV 43 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 6899999999999999999999999999999999865544443
No 219
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=60.25 E-value=8 Score=34.53 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=61.9
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhh
Q 011832 17 CQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLN 96 (476)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (476)
+..|+...+.++..++.||=.+.|+++........+... .. ..-......+..+.+.+...+...+.. ...
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA--~r------~~gy~~~~~w~~G~lTN~~~l~g~~~~-~~~ 160 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAA--RR------AGGYSHNRKWLGGLLTNARELFGALVR-KFL 160 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHH--HH------hcCceeeeeeccceeecchhhcccccc-ccc
Confidence 346788889999999999999999999655443322221 01 111111112222222221111111111 111
Q ss_pred chHHHHHHHhcCCCCceEEEE-CCCcc-hHHHHHHHcCCCeEEEecCch
Q 011832 97 TRPLLKQMLIDTSPPVSCIIG-DACME-FVVDVATELEIPVIHFRAISA 143 (476)
Q Consensus 97 ~~~~l~~ll~~~~~~~DlvI~-D~~~~-~~~~vA~~l~iP~i~~~~~~~ 143 (476)
+.+...-++..+ .+|+||+ |.... .++.=|.+++||+|.+.=+.+
T Consensus 161 ~~pd~~~f~~t~--~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 161 SLPDALCFLPTL--TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred CCCcceeecccC--CcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 122222233344 5688775 55555 667779999999999866544
No 220
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=59.72 E-value=35 Score=31.69 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=25.1
Q ss_pred CCceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 110 PPVSCII-GDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 110 ~~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
..||+|| .|+... .++.=|.++|||+|.+.-+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 3689877 565555 66777999999999996544
No 221
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=59.63 E-value=1e+02 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=26.6
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011832 10 ILIFPL-PCQSHMNSMLKLAEIFGLAGLKVTFLN 42 (476)
Q Consensus 10 il~~~~-~~~gH~~p~l~La~~L~~rGH~Vt~~~ 42 (476)
|++.+. ...|-..-.+.|++.|.++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 455543 355999999999999999999998865
No 222
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.79 E-value=21 Score=29.67 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
.+.||++.+.+.-||-.-..-+++.|++.|.+|...+.....+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 578999999999999999999999999999999987764444433
No 223
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=58.56 E-value=1.1e+02 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=23.8
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEE
Q 011832 15 LPCQSHMNSMLKLAEIFGLAGLKVTFL 41 (476)
Q Consensus 15 ~~~~gH~~p~l~La~~L~~rGH~Vt~~ 41 (476)
-++.|...-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456688889999999999999999886
No 224
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=58.22 E-value=28 Score=29.85 Aligned_cols=47 Identities=23% Similarity=0.206 Sum_probs=30.5
Q ss_pred HHHhhchHHHHHHHhcCCCCceEEEECCCcchHH--H-H-HHH-c-CCCeEEEec
Q 011832 92 SLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVV--D-V-ATE-L-EIPVIHFRA 140 (476)
Q Consensus 92 ~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~--~-v-A~~-l-~iP~i~~~~ 140 (476)
.+.....+.+.+++++. +||+||+...+...+ . + .+. + ++|++.+.|
T Consensus 72 ~~~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 34444456788888887 999999997775333 2 1 122 4 478777654
No 225
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=57.67 E-value=13 Score=35.58 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.++|||+|+..|..| .++|+.|.++||+|+++..
T Consensus 2 ~~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r 35 (308)
T PRK14619 2 TQPKTIAILGAGAWG-----STLAGLASANGHRVRVWSR 35 (308)
T ss_pred CCCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 457899999877665 5789999999999998876
No 226
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=57.60 E-value=13 Score=35.28 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=26.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||+|+..|+.| ..+|..|+++||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 688888877665 5678889999999999986
No 227
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=57.06 E-value=45 Score=33.94 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=60.8
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 9 HILIFPLP-CQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 9 ~il~~~~~-~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
+|+|.... +.|-..-...|++.|+++|++|..+-+.+.... . .++..-.+.+..+.+...
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d--~--------------~~~~~~~g~~~~~ld~~~--- 65 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYID--P--------------AYHTAATGRPSRNLDSWM--- 65 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCccc--H--------------HHHHHHhCCCcccCCcee---
Confidence 45555443 458889999999999999999998876422100 0 000000011111111100
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCC------------cchHHHHHHHcCCCeEEEecCc
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDAC------------MEFVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~------------~~~~~~vA~~l~iP~i~~~~~~ 142 (476)
.....+.+.+.....+.|++|++.. ......+|+.++.|++.+....
T Consensus 66 --------~~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 66 --------MGEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred --------CCHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 0123344444433336799997554 0136789999999999998654
No 228
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=56.41 E-value=34 Score=35.71 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=46.9
Q ss_pred cChHHHhhccccccccccc-Cc-hhHHHHHhhCCceeccCCcc-----cchhhHHHHHhhhcceeecccccCHHHHHHHH
Q 011832 354 VPQEEVLAHQAVAGFLTHS-GW-NSTLESIVAGVPMICWPYFA-----DQQINSRFVSEVWNLGLDMKDVCDRNVVEKMV 426 (476)
Q Consensus 354 ~pq~~lL~~~~~~~~I~HG-G~-~s~~eal~~GvP~l~iP~~~-----DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i 426 (476)
++..+++..|+++.|-+-= =| -|-+||+++|||.|+.=+.+ .+... ... ..|+-+.-+..-+.++..+.|
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~~--~~GV~VvdR~~~n~~e~v~~l 537 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DPE--EYGVYVVDRRDKNYDESVNQL 537 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HHG--GGTEEEE-SSSS-HHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cCc--CCcEEEEeCCCCCHHHHHHHH
Confidence 3666777777775555411 13 38899999999999887632 22222 222 235554444445555555555
Q ss_pred HHHHh-----H--hHHHHHHHHHHHHHH
Q 011832 427 NDLMV-----E--RKEEFMRAADRMATM 447 (476)
Q Consensus 427 ~~~l~-----~--~~~~y~~~a~~~~~~ 447 (476)
.+.|. + +....|++|++++++
T Consensus 538 a~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 538 ADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 54443 1 234567777776655
No 229
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=55.99 E-value=84 Score=30.60 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=38.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchhh
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLA--GLKVTFLNSKHNHER 49 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~ 49 (476)
.|||+|+-..+.|++.-...+.+.|.++ +.+|++++.+.+..-
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l 49 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPI 49 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHH
Confidence 5789999999999999999999999998 899999998765443
No 230
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=55.82 E-value=14 Score=32.92 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=30.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
|++..+|+.|..-....||++|.+++|+|..++..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 45555899999999999999999999999888764
No 231
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=55.82 E-value=28 Score=31.27 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYT 54 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (476)
++.||++.+.++-.|-....=++..|..+|++|++++..-..+.+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~ 135 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA 135 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH
Confidence 5679999999999999999999999999999999999876666554443
No 232
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=55.11 E-value=14 Score=35.13 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=26.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||+|+..|+.| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 689999877766 4678889999999999987
No 233
>PLN02939 transferase, transferring glycosyl groups
Probab=55.09 E-value=24 Score=39.00 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcC-----CCccCH-HHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 4 KPKSPHILIFPL-----PCQSHM-NSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 4 ~~~~~~il~~~~-----~~~gH~-~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
+.++|||++++. .-.|-+ ...-+|.++|++.||+|.+++|.+.
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 356899999872 212333 4467899999999999999999543
No 234
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=54.65 E-value=51 Score=31.70 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=30.2
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 13 FPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 13 ~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
++.|+.|-.--.+.||+.|.+||..|-+++-.+-
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence 4578999999999999999999999999997543
No 235
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.58 E-value=44 Score=31.74 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=40.0
Q ss_pred HhhcccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 359 VLAHQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 359 lL~~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+-..+++ +|+=||=||+.+++.. ++|++.+... .+|.. ...+.+++.++|.+++++
T Consensus 59 ~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGFl--~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 59 LGEVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGFL--TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred cccCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccccc--ccCCHHHHHHHHHHHHcC
Confidence 3334666 9999999999999753 6788887431 12221 256789999999999874
No 236
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.95 E-value=11 Score=35.04 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=37.7
Q ss_pred cccccccccccCchhHHHHHh------hCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 362 HQAVAGFLTHSGWNSTLESIV------AGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~------~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
.+++ +|+-||=||++.|++ .++|++++-. - .+|..- +.+.+++.+++.+++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL~--~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFYT--DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceecc--cCCHHHHHHHHHHHHcC
Confidence 3566 999999999999986 4889888832 1 122222 45677788888888774
No 237
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=53.54 E-value=1.6e+02 Score=27.71 Aligned_cols=42 Identities=24% Similarity=0.187 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
.++|+|+..|..|. .+|+.|.++||.|.++.-+.........
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 57899998887775 6899999999999999987776555443
No 238
>PRK09620 hypothetical protein; Provisional
Probab=53.51 E-value=23 Score=32.23 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCC
Q 011832 6 KSPHILIFPLPCQSHMNS------------MLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p------------~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+.+||++...|+.=.+.| -..||+.|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456777776554433222 478999999999999999863
No 239
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=53.49 E-value=1.1e+02 Score=28.63 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCEEEEEeCCcc
Q 011832 25 LKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 25 l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
.+|...|.+.||+||+++-...
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCc
Confidence 5788999999999999997543
No 240
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=53.15 E-value=36 Score=28.07 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=40.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
+.+|++.+..+-+|-.--.-++..|.++|++|..+......+.+.+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 35899999999999999999999999999999999987665655444
No 241
>PRK14098 glycogen synthase; Provisional
Probab=52.17 E-value=28 Score=35.84 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=29.3
Q ss_pred CEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 8 PHILIFPLP------CQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 8 ~~il~~~~~------~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|||++++.- ..|=-...-+|.++|+++||+|.++.|.+
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 899998732 22333557789999999999999999854
No 242
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=51.86 E-value=36 Score=30.87 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=25.4
Q ss_pred CCceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCch
Q 011832 110 PPVSCII-GDACME-FVVDVATELEIPVIHFRAISA 143 (476)
Q Consensus 110 ~~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~~ 143 (476)
..||+|| .|+... .++.=|..+|||+|.+.-+.+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 3689877 565544 667789999999999965543
No 243
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=51.73 E-value=27 Score=33.10 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=35.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
|||+++.=|+.|-..-...||..|+++|++|.++--++.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 789999999999999999999999999999999877654
No 244
>PRK05920 aromatic acid decarboxylase; Validated
Probab=51.24 E-value=23 Score=31.51 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
+.+||++.-.|+.+ .+-...+.+.|.+.||+|.++.+..-
T Consensus 2 ~~krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 2 KMKRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 34678777655444 47899999999999999999999543
No 245
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=50.63 E-value=1.7e+02 Score=25.75 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=52.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHH
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLME 88 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (476)
=|.+++..+.|-....+-+|-.-+-+|.+|-++..-.-....-+.... ... ...+.++.++++..........+.
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~-~~~--~~~v~~~~~~~g~tw~~~~~~~d~-- 104 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAAL-EKF--GLGVEFHGMGEGFTWETQDREADI-- 104 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHH-Hhh--ccceeEEecCCceeCCCcCcHHHH--
Confidence 366677777787766666665555666777765431111000000000 110 123788887766655322211111
Q ss_pred HHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc
Q 011832 89 MFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME 122 (476)
Q Consensus 89 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~ 122 (476)
... ...-..-.+++.+. ++|+||.|.+..
T Consensus 105 --~aa-~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 105 --AAA-KAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred --HHH-HHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 111 11122234555555 889999998876
No 246
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=50.20 E-value=29 Score=33.21 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=32.8
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 011832 8 PHILIFP-LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNH 47 (476)
Q Consensus 8 ~~il~~~-~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 47 (476)
||++|+. =|+.|-..-..++|-.++++|++|.++++++.+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 5777776 567799999999999999999999999997654
No 247
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=50.18 E-value=1.6e+02 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=21.9
Q ss_pred cccccccCch------hHHHHHhhCCceeccCC
Q 011832 366 AGFLTHSGWN------STLESIVAGVPMICWPY 392 (476)
Q Consensus 366 ~~~I~HGG~~------s~~eal~~GvP~l~iP~ 392 (476)
..+++|+|-| .+.+|...++|+|++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3388888855 78899999999999963
No 248
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=50.15 E-value=1.1e+02 Score=30.74 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=53.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHH
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLME 88 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (476)
|+.++..+.. ...+++-|.+-|-+|..+++........+.-. .. + . .+.. ......++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~--~~------~-----~-~~~~-~v~~~~dl~- 345 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDK--RW------L-----E-MLGV-EVKYRASLE- 345 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHH--HH------H-----H-hcCC-CceeccCHH-
Confidence 7777776655 78889999999999999877532111100000 00 0 0 0000 000001111
Q ss_pred HHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEe
Q 011832 89 MFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFR 139 (476)
Q Consensus 89 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~ 139 (476)
+. + +.+++. +||++|... -+..+|+++|||.+.+-
T Consensus 346 --~~--------~-~~l~~~--~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 346 --DD--------M-EAVLEF--EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred --HH--------H-HHHhhC--CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 11 1 344555 899999883 35678999999999963
No 249
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=50.13 E-value=1.6e+02 Score=29.14 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCCCEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 5 PKSPHILIFP-LPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 5 ~~~~~il~~~-~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+..++|+|+. .|..|. .+|+.|.++||+|+++...
T Consensus 96 ~~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 3457899987 666664 6899999999999999863
No 250
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.12 E-value=16 Score=34.52 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=39.3
Q ss_pred HHhhcccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 358 EVLAHQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 358 ~lL~~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++...+++ +|+-||=||++.+++. ++|++++-. -+ +|..- +.+.+++.+++.+++++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFLt--~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA--------GH------LGFLT--DITVDEAEKFFQAFFQG 120 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC--------CC------cccCC--cCCHHHHHHHHHHHHcC
Confidence 34445677 9999999999988663 778888721 11 22221 46778888888888874
No 251
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=49.79 E-value=93 Score=30.11 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCc-c----CHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCC
Q 011832 7 SPHILIFPLPCQ-S----HMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPR 81 (476)
Q Consensus 7 ~~~il~~~~~~~-g----H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 81 (476)
+..|+|.|..+. . -..-+..|++.|.++|.+|.++.++...+..++.... .+.. ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~------------------~~~~-~~ 235 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG------------------LPNA-VI 235 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh------------------cCCc-cc
Confidence 357788776333 2 2345899999999999999999986322222222110 0000 00
Q ss_pred CCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecC
Q 011832 82 AGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAI 141 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~ 141 (476)
......-.++.+++. .-|++|+-- .+...+|..+|+|+|.+...
T Consensus 236 ----------l~~k~sL~e~~~li~----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 236 ----------LAGKTSLEELAALIA----GADLVIGND--SGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred ----------cCCCCCHHHHHHHHh----cCCEEEccC--ChHHHHHHHcCCCEEEEECC
Confidence 000111233444554 338888653 34689999999999999753
No 252
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=49.37 E-value=24 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=31.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+||++.-.|+.|=+.-.+.+.++|.++|++|+++.++.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 36777777777777777799999999999999999854
No 253
>PRK10867 signal recognition particle protein; Provisional
Probab=49.36 E-value=96 Score=31.32 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchh
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLA-GLKVTFLNSKHNHE 48 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~ 48 (476)
+.-|+++..++.|-..-...||..|.++ |+.|.+++.+.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 3456667777889999999999999999 99999999976544
No 254
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=49.15 E-value=1.1e+02 Score=29.36 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=36.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLA--GLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~r--GH~Vt~~~~~~~ 46 (476)
|||+++-..+-|++.-..++.+.|.++ +.+||+++.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~ 41 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGF 41 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHH
Confidence 699999999999999999999999997 999999998654
No 255
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=49.08 E-value=1.6e+02 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=20.6
Q ss_pred ccccccCch------hHHHHHhhCCceeccCC
Q 011832 367 GFLTHSGWN------STLESIVAGVPMICWPY 392 (476)
Q Consensus 367 ~~I~HGG~~------s~~eal~~GvP~l~iP~ 392 (476)
.++.|+|-| .+.+|...++|+|++.-
T Consensus 62 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 62 ALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 377777744 77889999999999964
No 256
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=48.89 E-value=89 Score=31.23 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHE 48 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (476)
.+..|+++..-+.|-.-..-.||+-|.++|++|-+++.+.+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 3566888888899999999999999999999999999976643
No 257
>PRK11519 tyrosine kinase; Provisional
Probab=48.76 E-value=2.8e+02 Score=30.23 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=32.2
Q ss_pred CCCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 6 KSPHILIFP--LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 6 ~~~~il~~~--~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
++.|+++++ .|+.|--.-...||..|+..|++|.++-.+.
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 345666666 4677888899999999999999999997653
No 258
>CHL00067 rps2 ribosomal protein S2
Probab=48.69 E-value=45 Score=30.40 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=25.4
Q ss_pred CCceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCch
Q 011832 110 PPVSCII-GDACME-FVVDVATELEIPVIHFRAISA 143 (476)
Q Consensus 110 ~~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~~ 143 (476)
..||+|| .|+... .++.=|.++|||+|.+.-+.+
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 3688877 555544 677789999999999976543
No 259
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=48.51 E-value=1.2e+02 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=24.9
Q ss_pred HHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEe
Q 011832 103 QMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFR 139 (476)
Q Consensus 103 ~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~ 139 (476)
+.++.. +||++|.. ..+..+|+++|||.+.+.
T Consensus 344 ~~~~~~--~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEEY--RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhhc--CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 334454 89999987 346789999999999963
No 260
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=48.31 E-value=31 Score=32.13 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=33.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
|+|.++.=|+-|-..-...||..|+++|++|.++=-++.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 678888778889999999999999999999999865443
No 261
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.30 E-value=19 Score=34.12 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHhhcccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 358 EVLAHQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 358 ~lL~~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++...+++ +|+=||=||++.|++. ++|++.+-. -+ +|..- +.+.+++.+++.+++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFLt--~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT--------GR------LGFLA--TVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec--------CC------CCccc--ccCHHHHHHHHHHHHcC
Confidence 34445677 9999999999999873 788888722 11 22221 56788899999999885
No 262
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=48.29 E-value=30 Score=32.19 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=34.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
|+|.|+.=|+.|...-...||..|+++|++|.++=.++.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 778899888889999999999999999999998866543
No 263
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=48.27 E-value=70 Score=32.49 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=61.6
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHH
Q 011832 10 ILIFPLP-CQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLME 88 (476)
Q Consensus 10 il~~~~~-~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (476)
|+|.... ..|-..-...|++.|.++|++|..+=+.+.. + . + .++..-.+.+..+.+.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~--~----D--------~--~~~~~~~g~~~~~ld~------ 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY--I----D--------P--MFHTQATGRPSRNLDS------ 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC--C----C--------H--HHHHHHhCCchhhCCc------
Confidence 4555433 4588899999999999999999998653210 0 0 0 0000000111111110
Q ss_pred HHHHHHhhchHHHHHHHhcCCCCceEEEECCCc------------chHHHHHHHcCCCeEEEecCch
Q 011832 89 MFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACM------------EFVVDVATELEIPVIHFRAISA 143 (476)
Q Consensus 89 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~------------~~~~~vA~~l~iP~i~~~~~~~ 143 (476)
++ .-...+.+.+.....+.|++|++... ....++|+.++.|++.+.....
T Consensus 60 ~~-----~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 60 FF-----MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred cc-----CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 00 01233444444333367999977651 1367899999999999987653
No 264
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=48.23 E-value=1.6e+02 Score=25.21 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=35.7
Q ss_pred cccccCc------hhHHHHHhhCCceeccCCccc---------c-hhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 368 FLTHSGW------NSTLESIVAGVPMICWPYFAD---------Q-QINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 368 ~I~HGG~------~s~~eal~~GvP~l~iP~~~D---------Q-~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
+++|.|. +++.+|...++|+|++.-..+ | ..+...+.+ .+......-.+++++.+.+++.+.
T Consensus 68 ~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~--~~~k~~~~v~~~~~~~~~~~~A~~ 145 (172)
T PF02776_consen 68 VIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFR--PVTKWSYRVTSPDDLPEALDRAFR 145 (172)
T ss_dssp EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHG--GGSSEEEEECSGGGHHHHHHHHHH
T ss_pred EEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhhcchhc--cccchhcccCCHHHHHHHHHHHHH
Confidence 8888874 478889999999999874221 2 233333322 333332223366666666666554
No 265
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=48.17 E-value=26 Score=35.64 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCCc
Q 011832 5 PKSPHILIFPLPCQSHMNS------------MLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p------------~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
.+.+||++...|++=.+.| -.+||+++..+|++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 3567899888888777755 5789999999999999999754
No 266
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=48.11 E-value=14 Score=37.45 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=40.4
Q ss_pred hHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHH---HHHHHHHHHHhHhHHHHHHHHHH
Q 011832 376 STLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRN---VVEKMVNDLMVERKEEFMRAADR 443 (476)
Q Consensus 376 s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~---~l~~~i~~~l~~~~~~y~~~a~~ 443 (476)
++.||+++|+|++..=- -.=+..+ +..--|..+++ +++ .+++++.++..| +.++.++.+
T Consensus 381 v~IEAMa~glPvvAt~~----GGP~EiV-~~~~tG~l~dp--~~e~~~~~a~~~~kl~~~--p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNN----GGPAEIV-VHGVTGLLIDP--GQEAVAELADALLKLRRD--PELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEecC----CCceEEE-EcCCcceeeCC--chHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 78999999999998732 2223334 44335566654 444 699999999998 777666544
No 267
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.10 E-value=18 Score=34.61 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=39.8
Q ss_pred HhhcccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 359 VLAHQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 359 lL~~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+...+++ +|+=||=||++.|.+. ++|++.+-. -+ +|..- +.+.+++.+++.+++++
T Consensus 65 ~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G~------lGFLt--~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 65 FDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------GH------LGFLT--EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------CC------Ccccc--cCCHHHHHHHHHHHHcC
Confidence 3334666 9999999999999774 789888822 11 22211 46778888999988874
No 268
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.97 E-value=25 Score=31.47 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=31.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 11 LIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 11 l~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
++-.--+.|--.-..+++..+.+.||.|++++++.....+
T Consensus 32 lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ref 71 (235)
T COG2874 32 LIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREF 71 (235)
T ss_pred EEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHH
Confidence 3333446688888999999999999999999997655444
No 269
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=47.31 E-value=94 Score=30.24 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGL-KVTFLNSK 44 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH-~Vt~~~~~ 44 (476)
-++.||+++..|+-| ..+|+.|+..|. +++++-..
T Consensus 22 L~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 356789999888766 567899999998 78888764
No 270
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=46.77 E-value=32 Score=29.22 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+..||+++..|..| ...++.|.+.||+||++++.
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 45788888766444 77899999999999999753
No 271
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.55 E-value=1.2e+02 Score=27.66 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=30.3
Q ss_pred hHHHHHHHhcCCCCceEEEECCCcch---HHHHHHHcCCCeEEE
Q 011832 98 RPLLKQMLIDTSPPVSCIIGDACMEF---VVDVATELEIPVIHF 138 (476)
Q Consensus 98 ~~~l~~ll~~~~~~~DlvI~D~~~~~---~~~vA~~l~iP~i~~ 138 (476)
...++.+++.. .+-++.+.|.-+.+ +..+|...|+|++.=
T Consensus 137 ~~aM~~~m~~L-k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 137 EDAMEKLMEAL-KERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HHHHHHHHHHH-HHCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 45666677755 35699999998883 356899999999874
No 272
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=46.33 E-value=43 Score=31.78 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCEEEEEeC
Q 011832 6 KSPHILIFPLPCQS-H---MNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 6 ~~~~il~~~~~~~g-H---~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+++||+++..|..+ | +....++++.|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 57899999855333 2 35678899999999999988764
No 273
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=46.17 E-value=1.4e+02 Score=23.26 Aligned_cols=84 Identities=12% Similarity=0.207 Sum_probs=54.1
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHHhhch
Q 011832 19 SHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLSLNTR 98 (476)
Q Consensus 19 gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (476)
++-.-+.++++.|.+.|+++. .+ +...+.+.+.+ +.+..+.. +. ...
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~-aT-~gT~~~l~~~g-----------i~~~~v~~--~~------------------~~~ 56 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV-AT-EGTAKYLQEAG-----------IPVEVVNK--VS------------------EGR 56 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE-Ec-hHHHHHHHHcC-----------CeEEEEee--cC------------------CCc
Confidence 455678899999999999983 44 35555554443 33222210 00 023
Q ss_pred HHHHHHHhcCCCCceEEEECCCc-------chHHHHHHHcCCCeEE
Q 011832 99 PLLKQMLIDTSPPVSCIIGDACM-------EFVVDVATELEIPVIH 137 (476)
Q Consensus 99 ~~l~~ll~~~~~~~DlvI~D~~~-------~~~~~vA~~l~iP~i~ 137 (476)
+.+.+++++. ++|+||.-... +...-.|-.+|||++.
T Consensus 57 ~~i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PNIVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hhHHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 5577788876 89999984322 3456679999999995
No 274
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.04 E-value=28 Score=33.58 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
..|||+|+..|..| ..+|..|+++||+|+++...
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 35789999877766 56889999999999999873
No 275
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=45.96 E-value=46 Score=27.13 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=24.3
Q ss_pred CEEEEEcC-CCccCH--HHHHHHHHHHHhCCCEE-EEEeC
Q 011832 8 PHILIFPL-PCQSHM--NSMLKLAEIFGLAGLKV-TFLNS 43 (476)
Q Consensus 8 ~~il~~~~-~~~gH~--~p~l~La~~L~~rGH~V-t~~~~ 43 (476)
||++|+-. +-+|+- .-.+.+|+.+.++||+| +++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 56665543 333444 45788999999999994 66554
No 276
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=45.86 E-value=2e+02 Score=25.74 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHHHHHHH------
Q 011832 21 MNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEMFDSLS------ 94 (476)
Q Consensus 21 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~------ 94 (476)
+.-...+...++..|-+|.|+++......+.+... ...+ ..+.. ..+-.|..............+.
T Consensus 42 L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a---~~~~---~~yi~--~rWi~G~LTN~~~i~~~i~~l~~l~~~~ 113 (211)
T PF00318_consen 42 LRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFA---KRTG---SFYIN--ERWIGGTLTNWKTIKKSIKKLKKLEKLF 113 (211)
T ss_dssp HHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHH---HHHT---CEEEE--SS-STTTTTTTTHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH---HHhC---CCccC--ceecCcccCcHHHHHHHHHHHHHHHHhh
Confidence 34456677888889999999999765544333221 0011 11221 2333343333333322221111
Q ss_pred hhc-------h---HHHHHHHh---cCCCCceEEEECC-Ccc-hHHHHHHHcCCCeEEEecCc
Q 011832 95 LNT-------R---PLLKQMLI---DTSPPVSCIIGDA-CME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 95 ~~~-------~---~~l~~ll~---~~~~~~DlvI~D~-~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
... . ..+...+. .....||+||+-. ... .+..=|..+|||+|.+.-+.
T Consensus 114 ~~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn 176 (211)
T PF00318_consen 114 KLTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTN 176 (211)
T ss_dssp TSSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTT
T ss_pred hccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccchhHHHHHhcCceEEEeecCC
Confidence 100 1 11121221 2223589988544 443 66777999999999996543
No 277
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=45.82 E-value=3.6e+02 Score=27.80 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=65.4
Q ss_pred ceEeeccChHH---Hhhccccccccc--ccCch-hHHHHHhhCC----ceeccCCcccchhhHHHHHhhhcceeeccccc
Q 011832 348 GLLVSWVPQEE---VLAHQAVAGFLT--HSGWN-STLESIVAGV----PMICWPYFADQQINSRFVSEVWNLGLDMKDVC 417 (476)
Q Consensus 348 v~~~~~~pq~~---lL~~~~~~~~I~--HGG~~-s~~eal~~Gv----P~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~ 417 (476)
+.+.+.+|+.+ +++-+++ ++|| .-|+| ...|.++++. |+|+--+. -|. +.+.-++.+. -.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa---~~l~~AllVN-P~ 433 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA---VELKGALLTN-PY 433 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch---hhcCCCEEEC-CC
Confidence 34567788776 5667777 3333 35888 4559999987 44433221 111 2223344444 46
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 011832 418 DRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKM 471 (476)
Q Consensus 418 ~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 471 (476)
+.+.++++|.++|+...++=+++.+++.+..++ .+...=.++++++|..
T Consensus 434 d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 434 DPVRMDETIYVALAMPKAEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 899999999999994112334444444444443 3556668888888765
No 278
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=45.75 E-value=2.1e+02 Score=25.08 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=26.4
Q ss_pred EEEEEc---CCC-ccCHH-HHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 9 HILIFP---LPC-QSHMN-SMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 9 ~il~~~---~~~-~gH~~-p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
||+++. .|+ +|=+- ..-.|+..|+++||+||+++....
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~ 45 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDY 45 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCC
Confidence 577765 333 34443 355788888889999999988544
No 279
>PRK06988 putative formyltransferase; Provisional
Probab=45.62 E-value=2.2e+02 Score=27.26 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=24.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|||+|+..+. ......+.|.++||+|..+.+.+
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 7999996554 34567788888999988777643
No 280
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=45.49 E-value=32 Score=30.12 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=24.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLI 51 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 51 (476)
|||.++. .||+ -+.+|-.|+++||+|+.+-. +.+++.
T Consensus 1 M~I~ViG---lGyv--Gl~~A~~lA~~G~~V~g~D~--~~~~v~ 37 (185)
T PF03721_consen 1 MKIAVIG---LGYV--GLPLAAALAEKGHQVIGVDI--DEEKVE 37 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S---HHHHH
T ss_pred CEEEEEC---CCcc--hHHHHHHHHhCCCEEEEEeC--ChHHHH
Confidence 7888884 4444 37889999999999999886 444443
No 281
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=45.46 E-value=30 Score=32.63 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=27.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+||.|+-.+..| .+.|+.|+++||+|+++.-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 578888877666 57899999999999999864
No 282
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=45.24 E-value=2.5e+02 Score=27.67 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
+++..-|+.|--.-++.++..++++|.+|.+++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 46666778899999999999999999999999886544443
No 283
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=44.81 E-value=40 Score=33.22 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=27.8
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+.++|||+|. |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 18 ~~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 18 PSEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 4567898877 555554 45789999999999999874
No 284
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=44.80 E-value=3.1e+02 Score=26.74 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=61.1
Q ss_pred CCce-EeeccChH---HHhhcccccccccc--cCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecc-cccC
Q 011832 346 ERGL-LVSWVPQE---EVLAHQAVAGFLTH--SGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMK-DVCD 418 (476)
Q Consensus 346 ~nv~-~~~~~pq~---~lL~~~~~~~~I~H--GG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~-~~~~ 418 (476)
+|+. +.+++|.. ++|+.|++.-|++. =|+|++.-.|..|+|+++- -+-+++-... ++ |+=+.-. ++++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~-~~-~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK-EQ-GIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH-hC-CCeEEeccccCC
Confidence 5776 46788865 59999999666654 5899999999999999875 3444454454 55 7766555 5899
Q ss_pred HHHHHHHHHHHHh
Q 011832 419 RNVVEKMVNDLMV 431 (476)
Q Consensus 419 ~~~l~~~i~~~l~ 431 (476)
...|+++=+++..
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888876
No 285
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=44.33 E-value=2.1e+02 Score=27.04 Aligned_cols=107 Identities=10% Similarity=0.157 Sum_probs=58.0
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeC-CcchhhhhhcccccccccCCCCeeEEecCCCCCCCC
Q 011832 3 EKPKSPHILIFPLPCQSHMNSMLKLAEIFGLA--GLKVTFLNS-KHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADH 79 (476)
Q Consensus 3 ~~~~~~~il~~~~~~~gH~~p~l~La~~L~~r--GH~Vt~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 79 (476)
+..++|||+|+..+..+.+ .+|.+...+. +++|.++.+ .+....+.+..+ +.+..++... .
T Consensus 85 ~~~~~~ri~vl~Sg~g~nl---~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g----------Ip~~~~~~~~-~-- 148 (286)
T PRK13011 85 DPAARPKVLIMVSKFDHCL---NDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHG----------IPFHHFPITP-D-- 148 (286)
T ss_pred ecccCceEEEEEcCCcccH---HHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhC----------CCEEEeCCCc-C--
Confidence 3457899999998864444 3444444443 688888755 333333333322 4444443110 0
Q ss_pred CCCCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEec
Q 011832 80 PRAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~ 140 (476)
+ .......+.+.+++. ++|++|.-.|.. ....+-+.+.-..+-+++
T Consensus 149 -----~--------~~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK13011 149 -----T--------KPQQEAQVLDVVEES--GAELVVLARYMQVLSPELCRKLAGRAINIHH 195 (286)
T ss_pred -----c--------hhhhHHHHHHHHHHh--CcCEEEEeChhhhCCHHHHhhccCCeEEecc
Confidence 0 011123356667776 889999876665 445555555545555543
No 286
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=44.10 E-value=51 Score=32.06 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=56.1
Q ss_pred CEEEEEcCCCcc---C--HHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCC
Q 011832 8 PHILIFPLPCQS---H--MNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRA 82 (476)
Q Consensus 8 ~~il~~~~~~~g---H--~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 82 (476)
.-|+|.|..+.| + ..-+.+|++.|.++|++|.+++.+...+..++... . . +.....
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~---~------~-----~~~~~~----- 241 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA---A------L-----NTEQQA----- 241 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH---h------c-----cccccc-----
Confidence 446676643222 1 22478999999988999999887543332222110 0 0 000000
Q ss_pred CCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEec
Q 011832 83 GDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRA 140 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~ 140 (476)
...+......-.++..+++.. |++|+.-. ..+.+|..+|+|++.++.
T Consensus 242 -----~~~~l~g~~sL~el~ali~~a----~l~I~nDT--Gp~HlAaA~g~P~valfG 288 (348)
T PRK10916 242 -----WCRNLAGETQLEQAVILIAAC----KAIVTNDS--GLMHVAAALNRPLVALYG 288 (348)
T ss_pred -----ceeeccCCCCHHHHHHHHHhC----CEEEecCC--hHHHHHHHhCCCEEEEEC
Confidence 000000011123344555543 88887644 458999999999999864
No 287
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=44.09 E-value=39 Score=31.85 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=52.7
Q ss_pred ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHH
Q 011832 301 LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLES 380 (476)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~ea 380 (476)
..+.+..+.+.+|+.....+.||...++.. -.++.++++...+-.++++ ||=+.-..+++-+
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g----------------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~~ 106 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYG----------------ANRLLPYLDYDLIRANPKI--FVGYSDITALHLA 106 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCC----------------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHHHH
Confidence 445677788999999988999999987732 2233444555555567777 8777777777777
Q ss_pred Hhh--CCceeccCCcc
Q 011832 381 IVA--GVPMICWPYFA 394 (476)
Q Consensus 381 l~~--GvP~l~iP~~~ 394 (476)
++. |++.+--|...
T Consensus 107 l~~~~g~~t~hGp~~~ 122 (282)
T cd07025 107 LYAKTGLVTFHGPMLA 122 (282)
T ss_pred HHHhcCceEEECcccc
Confidence 754 77776666543
No 288
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=43.99 E-value=2e+02 Score=24.27 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=67.4
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhccccccccc
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLT 370 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~ 370 (476)
.|-|-+||.. +....+++...|+.++..+-..+-.-+ ...+.+.++.+...+ ..+++ ||.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH--R~p~~l~~~~~~~~~--------------~~~~v--iIa 61 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH--RTPERLLEFVKEYEA--------------RGADV--IIA 61 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT--TSHHHHHHHHHHTTT--------------TTESE--EEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--CCHHHHHHHHHHhcc--------------CCCEE--EEE
Confidence 3556677664 677788899999998865544433221 112222222221111 12445 888
Q ss_pred ccCchhHHHHHh---hCCceeccCCcccchhhHH----HHHhhhcceeeccc---ccCHHHHHHHHHHHHhHhHHHHHHH
Q 011832 371 HSGWNSTLESIV---AGVPMICWPYFADQQINSR----FVSEVWNLGLDMKD---VCDRNVVEKMVNDLMVERKEEFMRA 440 (476)
Q Consensus 371 HGG~~s~~eal~---~GvP~l~iP~~~DQ~~na~----~v~~~~G~G~~~~~---~~~~~~l~~~i~~~l~~~~~~y~~~ 440 (476)
=+|...-+-+.. .-.|++.+|....+..... .+..=.|+++..-. ..++.-++- ++|.-..+..+++
T Consensus 62 ~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~---~ILa~~d~~l~~k 138 (150)
T PF00731_consen 62 VAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAA---RILALKDPELREK 138 (150)
T ss_dssp EEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHH---HHHHTT-HHHHHH
T ss_pred ECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHH---HHHhcCCHHHHHH
Confidence 877653333332 2679999999776543222 22122255533321 233333333 4444111688888
Q ss_pred HHHHHHHHHH
Q 011832 441 ADRMATMART 450 (476)
Q Consensus 441 a~~~~~~~~~ 450 (476)
.+..++..++
T Consensus 139 l~~~~~~~~~ 148 (150)
T PF00731_consen 139 LRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888877665
No 289
>PLN02470 acetolactate synthase
Probab=43.95 E-value=1.6e+02 Score=31.07 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeecc-ChHHH-------hhcccccccccccCch--
Q 011832 307 LIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSWV-PQEEV-------LAHQAVAGFLTHSGWN-- 375 (476)
Q Consensus 307 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~~-pq~~l-------L~~~~~~~~I~HGG~~-- 375 (476)
.+.+++.|++.|.+.++-+.++... .+ ..+.+ .+++.++.-- .+... ....++.++++|.|-|
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~~~~----~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 89 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGGASM----EIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGAT 89 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccH----HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 4557778888888877777655321 12 22211 1233332111 11111 1122455588888855
Q ss_pred ----hHHHHHhhCCceeccC
Q 011832 376 ----STLESIVAGVPMICWP 391 (476)
Q Consensus 376 ----s~~eal~~GvP~l~iP 391 (476)
.+.+|...++|+|+|.
T Consensus 90 N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 90 NLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHhcCCcEEEEe
Confidence 7899999999999995
No 290
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=43.68 E-value=25 Score=34.09 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
|||+|+..|..| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 689999877766 46788999999999999863
No 291
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.59 E-value=34 Score=30.57 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=25.8
Q ss_pred CCCCCCCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011832 1 MEEKPKSPHILIFPL--PCQSHMNSMLKLAEIFGLAGLKVTFLN 42 (476)
Q Consensus 1 ~~~~~~~~~il~~~~--~~~gH~~p~l~La~~L~~rGH~Vt~~~ 42 (476)
|+.++.+.+|++... |+-|| +||+++++.|++|.-..
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIGY-----ALAKEFARNGYLVYATA 39 (289)
T ss_pred CCcccCCCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEEc
Confidence 456666677777663 33344 78999999999986433
No 292
>PLN02240 UDP-glucose 4-epimerase
Probab=43.41 E-value=40 Score=32.69 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.++|+|. |+.|.+ -..|++.|+++||+|+.+..
T Consensus 5 ~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 4566664 566766 45678999999999999863
No 293
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.33 E-value=23 Score=33.67 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHhhcccccccccccCchhHHHHHh----hCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 358 EVLAHQAVAGFLTHSGWNSTLESIV----AGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 358 ~lL~~~~~~~~I~HGG~~s~~eal~----~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++...+++ +|+=||=||++.|.+ .++|++++- .-+ +|... +++.+++.+++.+++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN--------~G~------lGFL~--~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGIN--------QGH------LGFLT--QIPREYMTDKLLPVLEG 124 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEe--------cCC------CeEee--ccCHHHHHHHHHHHHcC
Confidence 34345677 999999999999975 378988882 111 33322 46788899999998874
No 294
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=43.20 E-value=1.7e+02 Score=27.23 Aligned_cols=40 Identities=10% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLI 51 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 51 (476)
+++-++++..+.| + -.++|+.|++|||+|.++.- ..++++
T Consensus 5 ~~~~~lITGASsG-I--G~~~A~~lA~~g~~liLvaR--~~~kL~ 44 (265)
T COG0300 5 KGKTALITGASSG-I--GAELAKQLARRGYNLILVAR--REDKLE 44 (265)
T ss_pred CCcEEEEECCCch-H--HHHHHHHHHHCCCEEEEEeC--cHHHHH
Confidence 4456666644433 3 47899999999999999985 455443
No 295
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=43.17 E-value=91 Score=28.95 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=32.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
=+++...|+.|-..-.++++...+++|..|.+++.+.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3567778899999999999999989999999999864
No 296
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=43.14 E-value=29 Score=28.47 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 19 SHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 19 gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
..+.-.+-++..|.++||+|++.+.+.- .++.+.
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA-~kLl~v 44 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAA-LKLLEV 44 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHH-HHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHH-HhHhhh
Confidence 5566689999999999999999999543 443333
No 297
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.12 E-value=1.7e+02 Score=29.58 Aligned_cols=35 Identities=29% Similarity=0.601 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEe
Q 011832 100 LLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFR 139 (476)
Q Consensus 100 ~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~ 139 (476)
.+.+.++.. +||++|.... ...+|+++|||++.+.
T Consensus 368 e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 345566665 8999998853 5789999999998874
No 298
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=43.08 E-value=44 Score=30.62 Aligned_cols=42 Identities=10% Similarity=-0.028 Sum_probs=29.7
Q ss_pred CCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 2 EEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 2 ~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
..+...++|+++.-----=..-+-.....|+++||+|++++-
T Consensus 5 ~~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 5 PPMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 345667888777622222335677777888999999999876
No 299
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=42.91 E-value=43 Score=31.06 Aligned_cols=41 Identities=17% Similarity=0.068 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCceEEEECCCcc------hHHHHHHHcCCCeEEEecC
Q 011832 99 PLLKQMLIDTSPPVSCIIGDACME------FVVDVATELEIPVIHFRAI 141 (476)
Q Consensus 99 ~~l~~ll~~~~~~~DlvI~D~~~~------~~~~vA~~l~iP~i~~~~~ 141 (476)
..|.+.+++. +||+|++-..+. -+..+|+.||+|++.+...
T Consensus 102 ~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 4456666665 699999754443 4577999999999998653
No 300
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=42.44 E-value=25 Score=35.62 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=26.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|||+|+.-|- --++-|.+|+++||+||++-...
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEeccC
Confidence 6777776553 34888999999999999998753
No 301
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.42 E-value=1.6e+02 Score=29.75 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=34.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNH 47 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 47 (476)
.-|+++..++.|-..-...||..|.++|++|.+++.+.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4567777888999999999999999999999999997664
No 302
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=42.04 E-value=40 Score=29.43 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=31.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
+||++.-.|+.|=+. ...+.+.|.++|++|.++.++. ..++
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~-A~~f 42 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKA-ATKF 42 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChh-HHHH
Confidence 467777766655554 8999999999999999999854 4443
No 303
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=41.62 E-value=1.5e+02 Score=28.47 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=56.9
Q ss_pred CCEEEEEcCCCccC-----HHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCC
Q 011832 7 SPHILIFPLPCQSH-----MNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPR 81 (476)
Q Consensus 7 ~~~il~~~~~~~gH-----~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~ 81 (476)
+.-|++.|..+.|. ..-+.+|++.|.++|.+|.+++++...+..++... . . +.... +.
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~---~------~-----~~~~~--~l- 236 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA---L------L-----PGELR--NL- 236 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH---h------C-----Ccccc--cC-
Confidence 34566666443221 23488999999999999999888544332221110 0 0 00000 00
Q ss_pred CCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEec
Q 011832 82 AGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRA 140 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~ 140 (476)
.....-.++..+++.. |++|+.-. +.+.+|..+|+|+|.++.
T Consensus 237 -----------~g~~sL~el~ali~~a----~l~I~~DS--Gp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 237 -----------AGETSLDEAVDLIALA----KAVVTNDS--GLMHVAAALNRPLVALYG 278 (334)
T ss_pred -----------CCCCCHHHHHHHHHhC----CEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 0011123345555544 89997633 468999999999999855
No 304
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.32 E-value=30 Score=32.86 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHhhcccccccccccCchhHHHHHh----hCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 358 EVLAHQAVAGFLTHSGWNSTLESIV----AGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 358 ~lL~~~~~~~~I~HGG~~s~~eal~----~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++...+++ +|+=||=||++.|+. .++|++.+-.. + +|..- .++.+++.+++.+++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------~------lGFl~--~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------N------LGFLT--DLDPDNALQQLSDVLEG 119 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------C------CCccc--ccCHHHHHHHHHHHHcC
Confidence 34445666 999999999999975 36788877321 1 23222 46688899999999884
No 305
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=41.22 E-value=29 Score=29.56 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||.|+-.+..| ..+|+.|.++||+|+++..
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 689998877555 5789999999999998874
No 306
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=41.18 E-value=49 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=24.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|+++++. .|++- ..||..|++.||+|++.+...
T Consensus 2 ~~~~i~G---tGniG--~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIG---TGNIG--SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEEEec---cChHH--HHHHHHHHhCCCeEEEecCCC
Confidence 4555554 44443 578999999999999998743
No 307
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=41.16 E-value=2.1e+02 Score=23.83 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=31.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|++...++.|--..+..++..|.++|++|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 677778888999999999999999999999988754
No 308
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=41.07 E-value=60 Score=29.76 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=25.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
-|.++++ |+.|.+- .++++.|+++|++|.++...
T Consensus 15 ~k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 3555665 4555554 78999999999999988764
No 309
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=41.00 E-value=2.2e+02 Score=28.73 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=54.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcH
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQL 86 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (476)
.+|++++.-+ .....+++-|.+-|-+|..+......+.... +..... ...+.
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~----------------------~~~~~~-~~~D~ 362 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK----------------------LPVETV-VIGDL 362 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh----------------------CCcCcE-EeCCH
Confidence 5677776522 3667888888889999877776443221100 000000 00111
Q ss_pred HHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEE
Q 011832 87 MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHF 138 (476)
Q Consensus 87 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~ 138 (476)
..+.+++++. ++|++|.... ...+|+++|||++.+
T Consensus 363 ------------~~l~~~i~~~--~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 ------------EDLEDLACAA--GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred ------------HHHHHHHhhc--CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 2346667666 7899998753 478999999999986
No 310
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=40.28 E-value=41 Score=29.23 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHER 49 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 49 (476)
.++..++++..++.|--.-..++++++.++|+.|.|++.......
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 456689999999999999999999999999999999987544343
No 311
>PRK00784 cobyric acid synthase; Provisional
Probab=40.08 E-value=1.3e+02 Score=31.01 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=27.7
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 9 HILIFPLP-CQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 9 ~il~~~~~-~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.|+|.... ..|-..-...|++.|.++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 35555444 459999999999999999999987644
No 312
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=40.06 E-value=34 Score=31.00 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=28.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIR 52 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (476)
|+++++..+-.| ..+|+.|.+.||+|+.+-.. .+.+.+
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d--~~~~~~ 38 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD--EERVEE 38 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC--HHHHHH
Confidence 567777655443 78999999999999999873 444433
No 313
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=40.04 E-value=24 Score=32.51 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 22 NSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 22 ~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
.-.-.|+++|+++||+|++++|.+
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 456789999999999999999854
No 314
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=39.91 E-value=49 Score=33.43 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNH 47 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 47 (476)
.|||+++..+-.| ++.++.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 8899999999888 99999999999999999865543
No 315
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=39.61 E-value=59 Score=26.76 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=29.7
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFP-LPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~-~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+|+.++- .+...-+.|..-++...+++|++|+++.+
T Consensus 3 ~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 3 KKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4454443 46678899999999999999999999998
No 316
>PRK13604 luxD acyl transferase; Provisional
Probab=39.51 E-value=62 Score=30.89 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
++.+.+++..+..++...+..+|+.|.++|..|..+=.
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~ 72 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDS 72 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecC
Confidence 34567888888888877799999999999999987754
No 317
>PLN02929 NADH kinase
Probab=39.45 E-value=42 Score=31.91 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=43.1
Q ss_pred hcccccccccccCchhHHHHHh---hCCceeccCCcc------cchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHh
Q 011832 361 AHQAVAGFLTHSGWNSTLESIV---AGVPMICWPYFA------DQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMV 431 (476)
Q Consensus 361 ~~~~~~~~I~HGG~~s~~eal~---~GvP~l~iP~~~------DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~ 431 (476)
..+++ +|+-||=||+..|.+ .++|++++=... .++.|.-.. ..-+|... .++.+++.++|.++++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~--~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC--AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc--cCCHHHHHHHHHHHHc
Confidence 34566 999999999999855 468988875532 122222111 11244433 3678899999999998
Q ss_pred H
Q 011832 432 E 432 (476)
Q Consensus 432 ~ 432 (476)
+
T Consensus 137 g 137 (301)
T PLN02929 137 G 137 (301)
T ss_pred C
Confidence 4
No 318
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=39.40 E-value=2.5e+02 Score=30.59 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 6 KSPHILIFP--LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 6 ~~~~il~~~--~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
++.|++.++ .++.|--.-...||..|+..|++|.++-.+..
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 345666665 44668888899999999999999999977543
No 319
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.33 E-value=30 Score=33.06 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=40.4
Q ss_pred HhhcccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 359 VLAHQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 359 lL~~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+...+++ +|+=||=||++.|.+. ++|++++... .+|... +...+++.+++.+++++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--cCCHHHHHHHHHHHHcC
Confidence 3345666 9999999999999764 7898888331 123322 46678888999999884
No 320
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=39.32 E-value=3.3e+02 Score=25.50 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=56.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHHHH
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLMEM 89 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 89 (476)
|++...|+.|--.-...|.+.|.+.|.+|.++..... . +.+. .......-..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~-~-~~~~-------------------------~y~~~~~Ek~- 55 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL-G-IDRN-------------------------DYADSKKEKE- 55 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHH-H--TTS-------------------------SS--GGGHHH-
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc-c-cchh-------------------------hhhchhhhHH-
Confidence 5667799999999999999999999999999985222 1 1000 0000111111
Q ss_pred HHHHHhhchHHHHHHHhcCCCCceEEEECCCcc-hH-----HHHHHHcCCCeEEEecCchHHHHHH
Q 011832 90 FDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME-FV-----VDVATELEIPVIHFRAISACSFWAY 149 (476)
Q Consensus 90 ~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~-~~-----~~vA~~l~iP~i~~~~~~~~~~~~~ 149 (476)
........+...+... ++||.|...+ -+ .-+|+..+.+++.+........+..
T Consensus 56 ---~R~~l~s~v~r~ls~~----~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~ 114 (270)
T PF08433_consen 56 ---ARGSLKSAVERALSKD----TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQ 114 (270)
T ss_dssp ---HHHHHHHHHHHHHTT-----SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHH
T ss_pred ---HHHHHHHHHHHhhccC----eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHH
Confidence 1122234455555432 8999998776 22 2389999999999887655554433
No 321
>PRK07236 hypothetical protein; Provisional
Probab=38.90 E-value=56 Score=32.29 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
|..|+ +++|+|+.-| .--+.+|..|+++|++|+++-..
T Consensus 1 ~~~~~-~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 1 MTHMS-GPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCC-CCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEecC
Confidence 45554 6899999866 44689999999999999999863
No 322
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=38.88 E-value=2.8e+02 Score=24.60 Aligned_cols=105 Identities=9% Similarity=0.079 Sum_probs=52.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCC-CCCCCCCCCCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAG--LKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISD-GLPADHPRAGD 84 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~ 84 (476)
|||+|+..+..+= +.++.+.+.+.+ ++|.++.+......+.+... ..++.+..++. ....
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~-------~~gIp~~~~~~~~~~~------- 64 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAE-------AAGIPTFVLDHKDFPS------- 64 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHH-------HcCCCEEEECccccCc-------
Confidence 7899999776443 346666777764 77777554332111111110 01244443321 1100
Q ss_pred cHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEec
Q 011832 85 QLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~ 140 (476)
.....+.+.+.+++. ++|++|+-.+.. ....+-....-.++-+++
T Consensus 65 ---------~~~~~~~~~~~l~~~--~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHp 110 (200)
T PRK05647 65 ---------REAFDAALVEALDAY--QPDLVVLAGFMRILGPTFVSAYEGRIINIHP 110 (200)
T ss_pred ---------hhHhHHHHHHHHHHh--CcCEEEhHHhhhhCCHHHHhhccCCEEEEeC
Confidence 111133456677776 889999865543 333344444444555544
No 323
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=38.85 E-value=44 Score=33.98 Aligned_cols=121 Identities=9% Similarity=0.067 Sum_probs=55.7
Q ss_pred cCHHHHHHHHHHHHhC--------CCE----EEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCC---CCCCC
Q 011832 19 SHMNSMLKLAEIFGLA--------GLK----VTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPAD---HPRAG 83 (476)
Q Consensus 19 gH~~p~l~La~~L~~r--------GH~----Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~---~~~~~ 83 (476)
|.+.=.+.+|++|.+. |-+ |.++|---....-..-....+.+...++..+..+|-+-..+ .+-..
T Consensus 297 GQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwisr 376 (550)
T PF00862_consen 297 GQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWISR 376 (550)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S---G
T ss_pred CcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhccch
Confidence 5566678888888652 544 55554321111100111000222223334455555322221 23334
Q ss_pred CcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc--hHHHHHHHcCCCeEEEecCc
Q 011832 84 DQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME--FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~--~~~~vA~~l~iP~i~~~~~~ 142 (476)
.+++-++..+... ...+++++....||+|+.....- .|..+++++|+|-+.+-.+.
T Consensus 377 f~lWPyLe~fa~d---~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 377 FDLWPYLEEFADD---AEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp GG-GGGHHHHHHH---HHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred hhchhhHHHHHHH---HHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 4556666555443 23334443334899999775544 56789999999999986643
No 324
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=38.72 E-value=31 Score=31.24 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 20 HMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 20 H~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
|+..|...|++|.++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999874
No 325
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=38.36 E-value=1.8e+02 Score=27.73 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
.|||+|+..+..+ ...-++|.++||+|.-+.+.+.
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tqpd 35 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQPD 35 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeCCC
Confidence 4899999887653 5566788889999877776554
No 326
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=38.24 E-value=3.1e+02 Score=28.18 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=38.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
-=+++..-++.|--.-.++++.+.+++|.+|.+++.+...+.+.+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 3467788889999999999999999999999999998776665444
No 327
>PRK09739 hypothetical protein; Provisional
Probab=38.16 E-value=81 Score=27.82 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=24.1
Q ss_pred CCCEEEEEc-CCCcc-CH-HHHHHHHHHHHhCCCEEEEEeC
Q 011832 6 KSPHILIFP-LPCQS-HM-NSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 6 ~~~~il~~~-~~~~g-H~-~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+.|||+++. .|-.+ .- .-...+++.|.++||+|+++--
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 357888775 34332 22 2255566777788999998764
No 328
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=38.12 E-value=43 Score=33.58 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=25.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||.|+..|..| +.+|..|+++||+|+.+..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 578888766555 6889999999999999875
No 329
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=38.10 E-value=44 Score=32.10 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+|||.++..|+.| -+||..|+++||+|++....+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 3689999988887 589999999999999999743
No 330
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.07 E-value=53 Score=31.73 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.3
Q ss_pred hHHHHHHHhcCCCCceEEEECCCcchHH----------HHHHHcCCCeEEEec
Q 011832 98 RPLLKQMLIDTSPPVSCIIGDACMEFVV----------DVATELEIPVIHFRA 140 (476)
Q Consensus 98 ~~~l~~ll~~~~~~~DlvI~D~~~~~~~----------~vA~~l~iP~i~~~~ 140 (476)
...+.+++++. +||++|+-+.+..+. .+.+.++||.+.-..
T Consensus 69 ~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 69 LKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred HHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 44556667777 899999988776332 256789999997543
No 331
>PRK04148 hypothetical protein; Provisional
Probab=38.06 E-value=65 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+.+||+.+..| .| .++|..|++.||+|+.+=..+
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 45789999877 43 356888999999999887643
No 332
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.89 E-value=34 Score=29.62 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=20.8
Q ss_pred cccccccccccCchhHHHHHhhCCceeccCCcc
Q 011832 362 HQAVAGFLTHSGWNSTLESIVAGVPMICWPYFA 394 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~~GvP~l~iP~~~ 394 (476)
.+++ +|+.||...+..... ++|+|-+|..+
T Consensus 34 g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 34 GADV--IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp T-SE--EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred CCeE--EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4555 999999999988877 99999999754
No 333
>PRK07206 hypothetical protein; Provisional
Probab=37.74 E-value=1.2e+02 Score=30.27 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=23.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+|+++-.... ...+++++.++|++|.+++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 6777764322 3568999999999999888754
No 334
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.67 E-value=60 Score=30.44 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=40.2
Q ss_pred ChHHHhhcccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHH
Q 011832 355 PQEEVLAHQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLM 430 (476)
Q Consensus 355 pq~~lL~~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l 430 (476)
++.++...+++ +|+=||=||+..|++. ++|++.+-. - .+|... .++.+++.+++.+++
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~--------G------~lGFL~--~~~~~~~~~~l~~~~ 96 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR--------G------NLGFLT--DIDPKNAYEQLEACL 96 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC--------C------CCcccc--cCCHHHHHHHHHHHH
Confidence 33455555677 9999999999988653 678888732 1 133322 366778888888887
Q ss_pred h
Q 011832 431 V 431 (476)
Q Consensus 431 ~ 431 (476)
+
T Consensus 97 ~ 97 (272)
T PRK02231 97 E 97 (272)
T ss_pred h
Confidence 7
No 335
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=37.42 E-value=36 Score=30.47 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCceEEEECCCcch---HHHH----HHHcCCCeEEEe
Q 011832 99 PLLKQMLIDTSPPVSCIIGDACMEF---VVDV----ATELEIPVIHFR 139 (476)
Q Consensus 99 ~~l~~ll~~~~~~~DlvI~D~~~~~---~~~v----A~~l~iP~i~~~ 139 (476)
+.+.+.++.....||+|++|..... ...+ ...+++|+|.+.
T Consensus 81 p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 81 PPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 3355556655457999999988763 2334 445669999974
No 336
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=37.25 E-value=56 Score=28.61 Aligned_cols=41 Identities=5% Similarity=0.048 Sum_probs=31.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchhhh
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGL-AGLKVTFLNSKHNHERL 50 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~ 50 (476)
+||++.-.|+-+ .+-...++++|.+ .||+|.++.++. ..++
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~-A~~f 43 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA-ARQT 43 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH-HHHH
Confidence 467777767666 6669999999999 599999999954 3443
No 337
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=37.14 E-value=56 Score=32.60 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
+.+.+||++.-.|+. ..+-...+.+.|.++|++|.++.++.-
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A 44 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAA 44 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 456788988876765 555789999999999999999998543
No 338
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=37.04 E-value=1.7e+02 Score=25.73 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=30.6
Q ss_pred CE-EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 8 PH-ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 8 ~~-il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
.| |+|+..++.-|-.-...+++.|++.|-.|.+++-..
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 46 677777777777777799999999999998888753
No 339
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=36.97 E-value=1.1e+02 Score=29.96 Aligned_cols=88 Identities=9% Similarity=0.139 Sum_probs=51.1
Q ss_pred eEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcC-Cce--Ee---------------
Q 011832 290 SVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKE-RGL--LV--------------- 351 (476)
Q Consensus 290 ~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~-nv~--~~--------------- 351 (476)
.+++.+-||-.-..+.. .+.+.+++.+++++|......... .+ +|+ ++. ..
T Consensus 3 ~i~~~~GGTGGHi~Pal--a~a~~l~~~g~~v~~vg~~~~~e~---~l------~~~~g~~~~~~~~~~l~~~~~~~~~~ 71 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNL--AIIPYLKEDNWDISYIGSHQGIEK---TI------IEKENIPYYSISSGKLRRYFDLKNIK 71 (352)
T ss_pred eEEEEcCCcHHHHHHHH--HHHHHHHhCCCEEEEEECCCcccc---cc------CcccCCcEEEEeccCcCCCchHHHHH
Confidence 46777777765333433 256667777889998875442211 11 111 010 00
Q ss_pred -------eccChHHHhh--cccccccccccCchh---HHHHHhhCCceecc
Q 011832 352 -------SWVPQEEVLA--HQAVAGFLTHSGWNS---TLESIVAGVPMICW 390 (476)
Q Consensus 352 -------~~~pq~~lL~--~~~~~~~I~HGG~~s---~~eal~~GvP~l~i 390 (476)
.++--..++. +|++ +|+|||.-| +..|...|+|+++.
T Consensus 72 ~~~~~~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 72 DPFLVMKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 0001112344 4566 999999987 99999999998763
No 340
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=36.91 E-value=68 Score=27.27 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.2
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhcCC
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDSKQ 319 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 319 (476)
.+|+++||-...+...++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999988777888999999988875
No 341
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=36.91 E-value=4.9e+02 Score=26.81 Aligned_cols=171 Identities=13% Similarity=0.058 Sum_probs=97.9
Q ss_pred EEEEEecccc-ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChH---HHhhccccc
Q 011832 291 VLYVSFGSIT-LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQE---EVLAHQAVA 366 (476)
Q Consensus 291 ~I~vs~Gs~~-~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~---~lL~~~~~~ 366 (476)
+++..-|..+ +-..+.+...+.-+-..+.+++..-.++ ..-...+..+.++.|.++.+.-|.... .+.+-+|+=
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd--~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~ 372 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGD--PELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVI 372 (487)
T ss_pred cEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCc--HHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEE
Confidence 4444444444 2233444444444444455555443332 111122345556778888877666542 466666762
Q ss_pred ccccc---cCchhHHHHHhhCCceeccCCcc------cchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHH
Q 011832 367 GFLTH---SGWNSTLESIVAGVPMICWPYFA------DQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEF 437 (476)
Q Consensus 367 ~~I~H---GG~~s~~eal~~GvP~l~iP~~~------DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y 437 (476)
++-+. ||+ |=++|+++|.+-|+.+..+ |-..+. . ..-|.|...... +++.+..++++.+. -|
T Consensus 373 lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~-~~~gtGf~f~~~-~~~~l~~al~rA~~----~y 443 (487)
T COG0297 373 LMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--I-QGVGTGFLFLQT-NPDHLANALRRALV----LY 443 (487)
T ss_pred EeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--c-cCceeEEEEecC-CHHHHHHHHHHHHH----Hh
Confidence 22232 444 4578999999888888744 333233 3 334888888755 99999999998886 45
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 011832 438 MRAADRMATMARTTANEGGPSYCNLDRLIDDIKMM 472 (476)
Q Consensus 438 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~ 472 (476)
+.....++...++++..+-+-....++.++.-+..
T Consensus 444 ~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~~ 478 (487)
T COG0297 444 RAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKPL 478 (487)
T ss_pred hCCHHHHHHHHHhhcccccCchhHHHHHHHHHHHH
Confidence 55555566666665554444455566666654443
No 342
>PRK11823 DNA repair protein RadA; Provisional
Probab=36.74 E-value=2.5e+02 Score=28.49 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=34.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
=+++..-++.|--.-+++++..++++|++|.+++.+...+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 356677788899999999999999999999999987655544
No 343
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=36.59 E-value=1.7e+02 Score=32.86 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=59.4
Q ss_pred eccChHH---Hhhccccccccc---ccCch-hHHHHHhhCC---ceeccCCcccchhhHHHHHhhhc-ceeecccccCHH
Q 011832 352 SWVPQEE---VLAHQAVAGFLT---HSGWN-STLESIVAGV---PMICWPYFADQQINSRFVSEVWN-LGLDMKDVCDRN 420 (476)
Q Consensus 352 ~~~pq~~---lL~~~~~~~~I~---HGG~~-s~~eal~~Gv---P~l~iP~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~ 420 (476)
..+|+.+ ++..++| ++- .-|+| ...|+++++. -+++++-++ -++ +.+| -|+.+. -.+.+
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa----Gaa---~~L~~~AllVN-P~D~~ 515 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA----GAA---QSLGAGAILVN-PWNIT 515 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC----chH---HHhCCceEEEC-CCCHH
Confidence 3356554 5667777 443 34777 5569999955 122223222 111 2234 234444 47899
Q ss_pred HHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 011832 421 VVEKMVNDLMV-ERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKMMS 473 (476)
Q Consensus 421 ~l~~~i~~~l~-~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~ 473 (476)
.++++|.++|+ +. +.-+++.+++.+..+ ..+...-+++|+++|.+..
T Consensus 516 ~vA~AI~~AL~M~~-~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 516 EVAASIAQALNMPE-EEREKRHRHNFMHVT-----THTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHHhCCH-HHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHHH
Confidence 99999999998 41 223333333333332 2455666788888776653
No 344
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=36.32 E-value=76 Score=29.06 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 3 EKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 3 ~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
++...|+|+++. +.| .--..+++.|+++||+|+.++-
T Consensus 13 ~~~~~~~ilItG--asG--~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 13 ENVKTKTVFVAG--ATG--RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred ccccCCeEEEEC--CCc--HHHHHHHHHHHhCCCEEEEEec
Confidence 345567777765 333 2346788999999999988764
No 345
>PLN00016 RNA-binding protein; Provisional
Probab=36.24 E-value=45 Score=32.91 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=25.8
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 7 SPHILIFP--LPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 7 ~~~il~~~--~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+++|+|+. .|+.|.+ -..|++.|+++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 46788872 2344444 356789999999999999864
No 346
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=36.23 E-value=44 Score=23.64 Aligned_cols=22 Identities=27% Similarity=0.307 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCc
Q 011832 24 MLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 24 ~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
-+..|..|.++|++|+++-...
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 4678999999999999998743
No 347
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=36.06 E-value=3.2e+02 Score=24.78 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=23.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.|.++++.+ .| .=-.++|+.|+++|++|..+..
T Consensus 10 ~k~~lItG~-~~--gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 10 GKVAVVTGC-DT--GLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CCEEEEECC-Cc--hHHHHHHHHHHHCCCEEEEecC
Confidence 456666644 34 3457899999999999987654
No 348
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=35.94 E-value=59 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=26.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLN 42 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~ 42 (476)
.+.++|+|..++. --..+|+.|.+.||+|++..
T Consensus 26 l~gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 26 LEGKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEc
Confidence 4568899888764 44678999999999999554
No 349
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=35.94 E-value=1.2e+02 Score=25.83 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=0.0
Q ss_pred hhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeec-cC
Q 011832 277 RSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSW-VP 355 (476)
Q Consensus 277 ~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~-~p 355 (476)
.++-++|.+++ ...++ | ..........++..+.+-+++=+++.. ....+...+.....++ .+
T Consensus 21 ~~lg~~La~~g---~~lv~-G----g~~GlM~a~a~ga~~~gg~viGVlp~~---------l~~~~~~~~~~i~~~~~~~ 83 (159)
T TIGR00725 21 YRLGKELAKKG---HILIN-G----GRTGVMEAVSKGAREAGGLVVGILPDE---------DFAGNPYLTIKVKTGMNFA 83 (159)
T ss_pred HHHHHHHHHCC---CEEEc-C----CchhHHHHHHHHHHHCCCeEEEECChh---------hccCCCCceEEEECCCcch
Q ss_pred hHHHhhcccccccccccCchhHHHH---HhhCCceeccCCcc
Q 011832 356 QEEVLAHQAVAGFLTHSGWNSTLES---IVAGVPMICWPYFA 394 (476)
Q Consensus 356 q~~lL~~~~~~~~I~HGG~~s~~ea---l~~GvP~l~iP~~~ 394 (476)
-..++...+-..++-=||.||+.|. +.+++|+++++..+
T Consensus 84 Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g 125 (159)
T TIGR00725 84 RNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTG 125 (159)
T ss_pred HHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCC
No 350
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=35.66 E-value=1.9e+02 Score=29.25 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=33.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchh
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFG-LAGLKVTFLNSKHNHE 48 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~ 48 (476)
--|+++..++.|-..-...||..|. ++|.+|.+++.+.+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3456666778899999999999997 5899999999976543
No 351
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=35.56 E-value=37 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcch
Q 011832 21 MNSMLKLAEIFGLAGLKVTFLNSKHNH 47 (476)
Q Consensus 21 ~~p~l~La~~L~~rGH~Vt~~~~~~~~ 47 (476)
+.|...+.-.+.-|||++|++.|....
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~ 35 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYK 35 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHh
Confidence 456777777788899999999996553
No 352
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=35.43 E-value=40 Score=30.31 Aligned_cols=31 Identities=23% Similarity=0.098 Sum_probs=23.3
Q ss_pred CEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFP-LPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~-~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||+|+. .+..| ..++..|+++||+|+++..
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 6788874 34333 4789999999999998864
No 353
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=35.40 E-value=59 Score=31.13 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=51.8
Q ss_pred ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHH
Q 011832 301 LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLES 380 (476)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~ea 380 (476)
..+.+..+.+.+++..-..+.||.+.++.. -.++.++++...|-.++++ ||=..-..+++-+
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g----------------~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~a 110 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDD----------------SNELLPYLDYELIKKNPKI--FIGYSDITALHLA 110 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccC----------------HhhhhhhcCHHHHhhCCCE--EEeccHHHHHHHH
Confidence 445667777999999888899999987722 2333444555566667776 7777777777777
Q ss_pred Hh--hCCceeccCCcc
Q 011832 381 IV--AGVPMICWPYFA 394 (476)
Q Consensus 381 l~--~GvP~l~iP~~~ 394 (476)
++ +|++.+--|...
T Consensus 111 l~~~~g~~t~hGp~~~ 126 (308)
T cd07062 111 IYKKTGLVTYYGPNLL 126 (308)
T ss_pred HHHhcCCeEEECcccc
Confidence 74 367666666543
No 354
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=35.05 E-value=55 Score=31.05 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||.|+-.+..| ..+|+.|.++||+|+++..
T Consensus 1 m~Ig~IGlG~MG-----~~ma~~L~~~G~~v~v~~~ 31 (292)
T PRK15059 1 MKLGFIGLGIMG-----TPMAINLARAGHQLHVTTI 31 (292)
T ss_pred CeEEEEccCHHH-----HHHHHHHHHCCCeEEEEeC
Confidence 578888655444 6789999999999998764
No 355
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=34.98 E-value=1.3e+02 Score=26.88 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=36.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
--+++...++.|--.-.+.++...+++|+.|.+++.....+.+.+.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 3456666778899889999999888899999999998766655444
No 356
>CHL00194 ycf39 Ycf39; Provisional
Probab=34.94 E-value=71 Score=30.51 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||+++ |+.|.+ -..|++.|.++||+|+.++-
T Consensus 1 MkIlVt--GatG~i--G~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVI--GATGTL--GRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEE--CCCcHH--HHHHHHHHHHCCCeEEEEEc
Confidence 577765 566654 35688899999999999985
No 357
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=34.87 E-value=53 Score=32.95 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.|||.|+..|-.| +.+|..|+++||+|+.+-.
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 4789888655444 6789999999999999876
No 358
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=34.86 E-value=74 Score=26.58 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=50.4
Q ss_pred ccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeeccc-ccCHHHHHHHHHHHHh
Q 011832 369 LTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKD-VCDRNVVEKMVNDLMV 431 (476)
Q Consensus 369 I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~-~~~~~~l~~~i~~~l~ 431 (476)
-.=|+--||.|-+----|+|+=.-..-+++|...+ .+ |+-..+.+ ..+.++|..+++.+-.
T Consensus 32 ~~C~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl-~~-gl~~A~~KRpVs~e~ie~~v~~ie~ 93 (156)
T COG1327 32 LECGERFTTFERAELRPLIVVKKDGRREPFDREKL-RR-GLIRACEKRPVSSEQIEEAVSHIER 93 (156)
T ss_pred cccccccchhheeeeccceEECcCCCcCCCCHHHH-HH-HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34456668899888888888888888999999999 55 99888886 8899999999988754
No 359
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=34.77 E-value=1.3e+02 Score=30.18 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEE
Q 011832 99 PLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHF 138 (476)
Q Consensus 99 ~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~ 138 (476)
.++.+.++.. +||++|.... ...+|+++|||++..
T Consensus 346 ~e~~~~i~~~--~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEK--KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhc--CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 3455666766 8999999843 468899999999865
No 360
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=34.77 E-value=61 Score=28.82 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+..+|+++..|..| ...++.|.++|++||++++.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 45688888766544 67889999999999999874
No 361
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=34.46 E-value=96 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=33.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
||++..-++.|--.....+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999998865
No 362
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=34.38 E-value=1.8e+02 Score=25.43 Aligned_cols=100 Identities=11% Similarity=0.085 Sum_probs=47.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcHH
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLA--GLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQLM 87 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (476)
++-+=..+.|-+.-..+|+++|.++ |+.|.+-++............ . +.+...-+|-..
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~-----~--~~v~~~~~P~D~------------ 83 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL-----P--DRVDVQYLPLDF------------ 83 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG------G--GG-SEEE---SS------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC-----C--CCeEEEEeCccC------------
Confidence 3334446779999999999999998 898888776433333222110 0 012222232000
Q ss_pred HHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchH--HHHHHHcCCCeEEEec
Q 011832 88 EMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFV--VDVATELEIPVIHFRA 140 (476)
Q Consensus 88 ~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~--~~vA~~l~iP~i~~~~ 140 (476)
...++.++... +||++|.-....|- +..|++.|||++.++.
T Consensus 84 ----------~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 ----------PWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ----------HHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ----------HHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12245556666 77888755555543 4567888999999854
No 363
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=34.26 E-value=1.9e+02 Score=29.52 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=34.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
=+++..-|+.|--.-++.++..++++|++|.+++.+.....+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 356666788899999999999999999999999986554443
No 364
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=33.96 E-value=2.7e+02 Score=23.04 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=20.9
Q ss_pred ccccccCch------hHHHHHhhCCceeccCC
Q 011832 367 GFLTHSGWN------STLESIVAGVPMICWPY 392 (476)
Q Consensus 367 ~~I~HGG~~------s~~eal~~GvP~l~iP~ 392 (476)
.+++|+|-| .+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 488886644 78889999999999964
No 365
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=33.85 E-value=53 Score=28.64 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=27.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
||++.-.|+-|-+. ...+.+.|.++|++|.++.++.-
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A 37 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWA 37 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccH
Confidence 35555555555554 48999999999999999999543
No 366
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=33.77 E-value=93 Score=24.65 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
++..+.++..|-....-++..|.++|++|.++......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 56677788999999999999999999999999764443333
No 367
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=33.76 E-value=49 Score=32.48 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+.+++|+|+--+-.| +..|-.|+++|++|+++-...
T Consensus 2 ~~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 456789999877667 999999999999999998644
No 368
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=33.76 E-value=91 Score=23.77 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=39.8
Q ss_pred ccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 011832 394 ADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDDIKMM 472 (476)
Q Consensus 394 ~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~ 472 (476)
.|+-.|.... +++|.+... .++..++....-++++.+| += ++.+=+.+.. .| +.+.+|++.|+.+
T Consensus 20 ~~~~gWr~LA-e~lg~~~~f--r~S~~el~~cslkvl~p~g-SP---sk~LL~~~~~----rg---~Tv~~Ll~~L~~M 84 (97)
T cd08783 20 ADGKGWRKLA-ELAGSRGRF--RLSCLDLEQCSLKVLEPEG-SP---SRSLLKLLGE----RG---CTVTELSEFLQAM 84 (97)
T ss_pred CccCCHHHHH-HHHccCCcc--ccCHHHHHHHHHHHhcCCC-Cc---hHHHHHHHHH----cC---CcHHHHHHHHHHh
Confidence 3455666666 777777744 5899999999999999322 22 2333333322 23 4566666666654
No 369
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=33.62 E-value=1.9e+02 Score=29.55 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHH-----------HHHHHcCCCeEEEec
Q 011832 84 DQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVV-----------DVATELEIPVIHFRA 140 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~-----------~vA~~l~iP~i~~~~ 140 (476)
.+...++........+.+.+.+...+..+|+|+.+.+..++- .+|+..+.|.|.+.=
T Consensus 98 ~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~D 165 (486)
T COG1492 98 KSAVEYYQEGKGLLWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGD 165 (486)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhcccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEe
Confidence 345566766666667777777775556889999998877543 378899999998743
No 370
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.58 E-value=46 Score=32.03 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=26.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||.|+..|+.| ..+|..|+++||+|+++..
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r 31 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGR 31 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEec
Confidence 678888887765 4688999999999998886
No 371
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=33.26 E-value=8.6 Score=20.93 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=14.0
Q ss_pred CchhHHHHHhhCCceecc
Q 011832 373 GWNSTLESIVAGVPMICW 390 (476)
Q Consensus 373 G~~s~~eal~~GvP~l~i 390 (476)
|.|++.-+|..|.|.++-
T Consensus 1 gIGa~Lkvla~~LP~lIS 18 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLIS 18 (26)
T ss_dssp -HHHHHHHHHTHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHH
Confidence 678889999998887763
No 372
>PHA02754 hypothetical protein; Provisional
Probab=33.24 E-value=86 Score=21.26 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=19.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 011832 424 KMVNDLMVERKEEFMRAADRMATMART 450 (476)
Q Consensus 424 ~~i~~~l~~~~~~y~~~a~~~~~~~~~ 450 (476)
+.|.+++.+ ..|++..+++++++.+
T Consensus 5 eEi~k~i~e--K~Fke~MRelkD~LSe 29 (67)
T PHA02754 5 EEIPKAIME--KDFKEAMRELKDILSE 29 (67)
T ss_pred HHHHHHHHH--hHHHHHHHHHHHHHhh
Confidence 345556666 6899999999999765
No 373
>PRK11914 diacylglycerol kinase; Reviewed
Probab=33.21 E-value=1.8e+02 Score=27.67 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=45.9
Q ss_pred EEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhccccccccc
Q 011832 291 VLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLT 370 (476)
Q Consensus 291 ~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~ 370 (476)
.+.++--|-.....+....+.+.++..+..+....... .+ ....+.. .......++ +|-
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~--~~---~~~~~a~--------------~~~~~~~d~--vvv 70 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD--AH---DARHLVA--------------AALAKGTDA--LVV 70 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC--HH---HHHHHHH--------------HHHhcCCCE--EEE
Confidence 44455433322234556677788888777654333222 00 1111111 111223455 999
Q ss_pred ccCchhHHHHH----hhCCceeccCC
Q 011832 371 HSGWNSTLESI----VAGVPMICWPY 392 (476)
Q Consensus 371 HGG~~s~~eal----~~GvP~l~iP~ 392 (476)
-||=||+.|++ ..++|+-++|.
T Consensus 71 ~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 71 VGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred ECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999997 34789999995
No 374
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.14 E-value=45 Score=31.27 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=38.0
Q ss_pred cccccccccccCchhHHHHHhh-CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 362 HQAVAGFLTHSGWNSTLESIVA-GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~~-GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
.+++ +|+=||=||+..+.+. .+|++.+ |.-+ +|..- +.+.+++.+++.+++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGI--------N~G~------lGFL~--~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGI--------NMGG------LGFLT--EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEE--------ECCC------CccCc--ccCHHHHHHHHHHHHcC
Confidence 4666 9999999999999884 5577666 2211 22222 46788999999999884
No 375
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=33.10 E-value=4.6e+02 Score=28.69 Aligned_cols=40 Identities=10% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 7 SPHILIFP--LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 7 ~~~il~~~--~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
..|++.++ -|+.|--.-...||..|+..|++|.++-.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34555544 55779999999999999999999999977544
No 376
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.08 E-value=86 Score=28.19 Aligned_cols=38 Identities=16% Similarity=0.030 Sum_probs=25.7
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|..++ .++|+|. |+.|++ -..|++.|.++||+|++++.
T Consensus 1 ~~~~~-~~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 1 MGSLM-GRVALVT--GAARGL--GRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCC-CCEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeC
Confidence 44333 3466653 456664 46889999999999977665
No 377
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=32.41 E-value=4.5e+02 Score=25.07 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 100 LLKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 100 ~l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
.+.+.+++. +||++|+=.+.. .-..+-+..+..++-++++.
T Consensus 69 ~~~~~l~~~--~~Dliv~~~~~~iip~~il~~~~~g~iNiHpsl 110 (309)
T PRK00005 69 EFLAELAAL--NADVIVVVAYGQILPKAVLDIPRLGCINLHASL 110 (309)
T ss_pred HHHHHHHhc--CcCEEEEehhhcccCHHHHhcCCCCEEEEeCcc
Confidence 345556666 889999865543 44455555666678777753
No 378
>PRK12828 short chain dehydrogenase; Provisional
Probab=32.40 E-value=93 Score=27.82 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.+.++++|. ++.|.+ -..+++.|+++|++|.++..
T Consensus 5 ~~~k~vlIt--Gatg~i--G~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 5 LQGKVVAIT--GGFGGL--GRATAAWLAARGARVALIGR 39 (239)
T ss_pred CCCCEEEEE--CCCCcH--hHHHHHHHHHCCCeEEEEeC
Confidence 334455553 455665 47889999999999888875
No 379
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.38 E-value=61 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=25.0
Q ss_pred CceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 111 PVSCII-GDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 111 ~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
.||+|| +|+... -++.=|.++|||+|.+.-+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 678866 676666 67778999999999996643
No 380
>PRK12829 short chain dehydrogenase; Provisional
Probab=32.30 E-value=79 Score=28.92 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.+.++++|. |+.|.+ ...+++.|+++||+|+.+.-
T Consensus 9 ~~~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 9 LDGLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred cCCCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 345666665 444555 47889999999999988775
No 381
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.26 E-value=2.6e+02 Score=27.07 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=39.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
+--|+|+..-+.|-.-..-.||..|.+.|+.|.++..+.++....+.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQ 185 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQ 185 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHH
Confidence 44567788889999999999999999999999999998776544333
No 382
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=32.11 E-value=4.2e+02 Score=27.16 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.4
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 17 CQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 17 ~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
..|-..-...|++.|.++|.+|..+=+
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 347778899999999999999998766
No 383
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=32.06 E-value=3.5e+02 Score=23.72 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=35.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc-chhhhhh
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH-NHERLIR 52 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~-~~~~~~~ 52 (476)
=+.++..++.|-..-.+.++......|..|.++.++. ...++.+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 3566777888999999999999999999999999964 3444433
No 384
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=31.96 E-value=3.5e+02 Score=28.41 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcCCceEeeccC-hHHHh-------hcccccccccccCch--
Q 011832 307 LIEFWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLLVSWVP-QEEVL-------AHQAVAGFLTHSGWN-- 375 (476)
Q Consensus 307 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~~~~~p-q~~lL-------~~~~~~~~I~HGG~~-- 375 (476)
-+.+++.|+..|.+.++-+.++... .+ ..+.+ .+++.++.-.- +...+ ......++++|.|-|
T Consensus 16 ~~~l~~~L~~~GV~~vFgvpG~~~~----~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 89 (564)
T PRK08155 16 AELIVRLLERQGIRIVTGIPGGAIL----PLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGAT 89 (564)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcccH----HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHH
Confidence 4557777777777777776654221 12 22211 11333322111 11111 111233478887755
Q ss_pred ----hHHHHHhhCCceeccC
Q 011832 376 ----STLESIVAGVPMICWP 391 (476)
Q Consensus 376 ----s~~eal~~GvP~l~iP 391 (476)
.+.+|...++|+|++.
T Consensus 90 N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 90 NLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHHHHhcCCCEEEEe
Confidence 7899999999999985
No 385
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.87 E-value=55 Score=28.08 Aligned_cols=28 Identities=21% Similarity=0.148 Sum_probs=22.5
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 15 LPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 15 ~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
.|+.|++- ..+++.|.++||+|+.++-.
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESS
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecC
Confidence 35666664 46899999999999999974
No 386
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=31.80 E-value=42 Score=34.26 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=38.9
Q ss_pred hcccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 361 AHQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 361 ~~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
..+++ +|+=||=||++.|.+. ++|++.+ |.-+ +|..- .++.+++.++|.+++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G~------LGFLt--~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SMGS------LGFMT--PFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCCC------cceec--ccCHHHHHHHHHHHHcC
Confidence 35666 9999999999999774 5677766 2111 33322 46788999999999884
No 387
>PRK06179 short chain dehydrogenase; Provisional
Probab=31.76 E-value=80 Score=29.12 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=23.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.++++ |+.|-+ -.++++.|+++|++|+..+-
T Consensus 6 ~vlVt-Gasg~i--G~~~a~~l~~~g~~V~~~~r 36 (270)
T PRK06179 6 VALVT-GASSGI--GRATAEKLARAGYRVFGTSR 36 (270)
T ss_pred EEEEe-cCCCHH--HHHHHHHHHHCCCEEEEEeC
Confidence 44555 445555 57899999999999988775
No 388
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=31.67 E-value=2.2e+02 Score=27.48 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=55.3
Q ss_pred CEEEEEcCCCcc----CHHHHHHHHHHHHhCCCEEEEEeCCcchhh-hhhcccccccccCCCCeeEEecCCCCCCCCCCC
Q 011832 8 PHILIFPLPCQS----HMNSMLKLAEIFGLAGLKVTFLNSKHNHER-LIRYTDIHDRFLQYSEFQFKTISDGLPADHPRA 82 (476)
Q Consensus 8 ~~il~~~~~~~g----H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~ 82 (476)
..|++.|..+.. ...-+.+|++.|.++|.+|.+++.+...+. ..+... . ..+...
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~-----------~------~~~~~~--- 241 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIA-----------Q------GCQTPR--- 241 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHH-----------h------hCCCCc---
Confidence 346666643321 123478999999999999998876432221 111110 0 000000
Q ss_pred CCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEec
Q 011832 83 GDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRA 140 (476)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~ 140 (476)
......+..-.++..+++.. |++|+. ....+.+|..+|+|+|.++.
T Consensus 242 ------~~~l~g~~sL~el~ali~~a----~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 242 ------VTSLAGKLTLPQLAALIDHA----RLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred ------ccccCCCCCHHHHHHHHHhC----CEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 00000011123445555543 899976 34568999999999999864
No 389
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=31.40 E-value=2.6e+02 Score=25.29 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCc-cCHHH---HHHHHHHHHhCCCEEEEEeCCcch-hhhhhcccccccccCCCCeeEEecCCCCCCCCC
Q 011832 6 KSPHILIFPLPCQ-SHMNS---MLKLAEIFGLAGLKVTFLNSKHNH-ERLIRYTDIHDRFLQYSEFQFKTISDGLPADHP 80 (476)
Q Consensus 6 ~~~~il~~~~~~~-gH~~p---~l~La~~L~~rGH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 80 (476)
++..|+|.|..+. .-..| +.+|++.|.++|.+|.+++++... ....+... ...+. ....+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-----~~~~~-~~~~~--------- 168 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-----AGLQN-PVINL--------- 168 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-----TTHTT-TTEEE---------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-----Hhccc-ceEee---------
Confidence 3456777775544 22223 699999999999889888875541 11111110 00000 00000
Q ss_pred CCCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEecCc
Q 011832 81 RAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~~~ 142 (476)
....+ -.++..++... |++|+-- .+.+.+|..+|+|++.++...
T Consensus 169 ~~~~~------------l~e~~ali~~a----~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 169 AGKTS------------LRELAALISRA----DLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp TTTS-------------HHHHHHHHHTS----SEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred cCCCC------------HHHHHHHHhcC----CEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 00011 12244555544 8988653 346899999999999997643
No 390
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=31.27 E-value=75 Score=30.46 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=29.7
Q ss_pred CEEEEEcCC--C-ccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 8 PHILIFPLP--C-QSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 8 ~~il~~~~~--~-~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|||+|+.-| + .-+.....+|.++..+|||+|.++.+..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 678777743 2 2455678899999999999999999853
No 391
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=31.20 E-value=45 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+..+|+++-++++||. -|.-|.+.|++|++..-+.
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~ 37 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREG 37 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TT
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCC
Confidence 4578999999999985 5788999999999988754
No 392
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.19 E-value=70 Score=29.68 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=37.3
Q ss_pred cccccccccccCchhHHHHHh-hCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 362 HQAVAGFLTHSGWNSTLESIV-AGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~-~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
++++ +|+=||=||+..|++ .++|++.+-. -+ +|... .++.+++.+++.++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~--------G~------lGfl~--~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKA--------GR------LGFLS--SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeC--------CC------Ccccc--ccCHHHHHHHHHHHHcC
Confidence 3566 999999999999977 5778777721 11 22222 46778888888888774
No 393
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=31.15 E-value=94 Score=30.86 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=26.9
Q ss_pred CCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 4 KPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+.+.|+|+|+ |+.|-+ -..+++.|.++||+|+.++-
T Consensus 57 ~~~~~kVLVt--GatG~I--G~~l~~~Ll~~G~~V~~l~R 92 (390)
T PLN02657 57 EPKDVTVLVV--GATGYI--GKFVVRELVRRGYNVVAVAR 92 (390)
T ss_pred CCCCCEEEEE--CCCcHH--HHHHHHHHHHCCCEEEEEEe
Confidence 4556787776 455544 56789999999999998875
No 394
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=30.66 E-value=81 Score=31.55 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=33.2
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 6 KSPHILIFPL--PCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 6 ~~~~il~~~~--~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
++|+|+.+.. |+.|-..-...||..|+.+|++|.++=.++.
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 3567655553 6779999999999999999999999876554
No 395
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=30.62 E-value=1.5e+02 Score=23.21 Aligned_cols=93 Identities=10% Similarity=-0.008 Sum_probs=48.6
Q ss_pred EEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeecc--ChHHHhhcccccccc
Q 011832 292 LYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWV--PQEEVLAHQAVAGFL 369 (476)
Q Consensus 292 I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~--pq~~lL~~~~~~~~I 369 (476)
||++-.-...........+.++|+..+..++.-......... .+......+ -....+..|++-.++
T Consensus 1 IYlAgp~F~~~~~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~------------~~~~~~~~i~~~d~~~i~~~D~via~ 68 (113)
T PF05014_consen 1 IYLAGPFFSEEQKARVERLREALEKNGFEVYSPQDNDENDEE------------DSQEWAREIFERDLEGIRECDIVIAN 68 (113)
T ss_dssp EEEESGGSSHHHHHHHHHHHHHHHTTTTEEEGGCTCSSS--T------------TSHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred CEEeCCcCCHHHHHHHHHHHHHHHhCCCEEEecccccccccc------------ccchHHHHHHHHHHHHHHHCCEEEEE
Confidence 566544322223355667888899888754421111100000 000000000 124566677775555
Q ss_pred ccc---CchhHHHH---HhhCCceeccCCcccc
Q 011832 370 THS---GWNSTLES---IVAGVPMICWPYFADQ 396 (476)
Q Consensus 370 ~HG---G~~s~~ea---l~~GvP~l~iP~~~DQ 396 (476)
-.| +.||..|. ...|+|++++-.-..+
T Consensus 69 l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 69 LDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp ECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred CCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 555 89999996 6779999988654433
No 396
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=30.39 E-value=1.6e+02 Score=19.63 Aligned_cols=50 Identities=8% Similarity=0.190 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Q 011832 418 DRNVVEKMVNDLMVERKEEF-MRAADRMATMARTTAN-EGGPSYCNLDRLIDDI 469 (476)
Q Consensus 418 ~~~~l~~~i~~~l~~~~~~y-~~~a~~~~~~~~~~~~-~~g~~~~~~~~~i~~~ 469 (476)
|.++|.++|+++|.+ ... .--.+++++.+.+.++ +-.....+++++|...
T Consensus 1 td~~i~~~i~~iL~~--~dl~~vT~k~vr~~Le~~~~~dL~~~K~~I~~~I~~~ 52 (54)
T PF08766_consen 1 TDEEIREAIREILRE--ADLDTVTKKQVREQLEERFGVDLSSRKKFIKELIDEF 52 (54)
T ss_dssp -HHHHHHHHHHHHTT--S-GGG--HHHHHHHHHHH-SS--SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCHhHhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 457888888888872 111 1222344444444332 2233444566655543
No 397
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=30.35 E-value=1.2e+02 Score=26.77 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=26.9
Q ss_pred HHHHHhcCCCCceEEEE-CCCcc-hHHHHHHHcCCCeEEEec
Q 011832 101 LKQMLIDTSPPVSCIIG-DACME-FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 101 l~~ll~~~~~~~DlvI~-D~~~~-~~~~vA~~l~iP~i~~~~ 140 (476)
+.+.+... ++|+|+. +...+ .|..+|..+|+|++...-
T Consensus 42 la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 42 FARRFKDE--GITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHhccC--CCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 44444444 7899994 34444 778899999999999743
No 398
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=30.29 E-value=95 Score=29.99 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=32.3
Q ss_pred EEEE--EcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 9 HILI--FPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 9 ~il~--~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
=|.+ ++.++.|-.--...|++.|.++|++|.+++-.+
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 3455 678999999999999999999999999999754
No 399
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=30.22 E-value=72 Score=28.41 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.8
Q ss_pred CceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 111 PVSCII-GDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 111 ~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
.||+|| +|+... -++.=|.++|||+|.+.-+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 678876 676666 66777999999999997543
No 400
>PRK05541 adenylylsulfate kinase; Provisional
Probab=30.13 E-value=1.3e+02 Score=25.76 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=36.8
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|+++.+++-|+|...++.|--.....|++.|...|..+.++..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 7888888888888899999988899999999888888777654
No 401
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=30.04 E-value=79 Score=29.93 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+++.+|.|+..+-.| ...+..|.+.||.||++.-
T Consensus 33 ~s~~~iGFIGLG~MG-----~~M~~nLik~G~kVtV~dr 66 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMG-----SAMVSNLIKAGYKVTVYDR 66 (327)
T ss_pred cccceeeEEeeccch-----HHHHHHHHHcCCEEEEEeC
Confidence 467899999888765 5678999999999999874
No 402
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.98 E-value=80 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCceEEEECCCcch--HHHHHHHcCCCeEEEec
Q 011832 99 PLLKQMLIDTSPPVSCIIGDACMEF--VVDVATELEIPVIHFRA 140 (476)
Q Consensus 99 ~~l~~ll~~~~~~~DlvI~D~~~~~--~~~vA~~l~iP~i~~~~ 140 (476)
..++.++. . +||+||....... ....-+..|||++.+..
T Consensus 60 ~n~E~ll~-l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVA-L--KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhc-c--CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 44455554 3 8899998655442 44556789999998853
No 403
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=29.87 E-value=46 Score=31.72 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=32.1
Q ss_pred HHhhcccccccccccCchhHHHHHh----hCCceeccCCcccch
Q 011832 358 EVLAHQAVAGFLTHSGWNSTLESIV----AGVPMICWPYFADQQ 397 (476)
Q Consensus 358 ~lL~~~~~~~~I~HGG~~s~~eal~----~GvP~l~iP~~~DQ~ 397 (476)
+.|..-++.++|.=||-+|..-|.. .|+|++++|-..|-.
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDND 128 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDND 128 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCC
Confidence 3566778888999999999877753 799999999866643
No 404
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=29.80 E-value=95 Score=27.01 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCceEEEE-CCCcc-hHHHHHHHcCCCeEEE
Q 011832 100 LLKQMLIDTSPPVSCIIG-DACME-FVVDVATELEIPVIHF 138 (476)
Q Consensus 100 ~l~~ll~~~~~~~DlvI~-D~~~~-~~~~vA~~l~iP~i~~ 138 (476)
.+.+..... ++|.|++ +...+ .|..+|..+|+|++..
T Consensus 44 ~~~~~~~~~--~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDD--GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhccc--CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 445555555 7899994 44444 7899999999999997
No 405
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.68 E-value=53 Score=30.63 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=37.1
Q ss_pred ccccccccccCchhHHHHHhh-----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 363 QAVAGFLTHSGWNSTLESIVA-----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 363 ~~~~~~I~HGG~~s~~eal~~-----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
+++ +|+=||=||++.|++. .+|++.+-.. - .+|.. .+.+.+++.+++.+++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~-------G------~lGFL--~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTK-------D------QLGFY--CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecC-------C------CCeEc--ccCCHHHHHHHHHHHHcC
Confidence 566 9999999999999874 5676666320 1 12222 146778888899888874
No 406
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.65 E-value=4.3e+02 Score=24.93 Aligned_cols=113 Identities=8% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHP 80 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 80 (476)
+.....+|||+|+..+..+.+.-.+.-.+.=.-...=+.+++.......+.+..+ +.+..++.....
T Consensus 83 l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g----------Ip~~~~~~~~~~--- 149 (286)
T PRK06027 83 LLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFG----------IPFHHVPVTKET--- 149 (286)
T ss_pred EcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhC----------CCEEEeccCccc---
Q ss_pred CCCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEecC
Q 011832 81 RAGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRAI 141 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~~ 141 (476)
.......+.+.+++. ++|+||.-.|.. ....+-+.+.-.++-++++
T Consensus 150 -------------~~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 150 -------------KAEAEARLLELIDEY--QPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred -------------cchhHHHHHHHHHHh--CCCEEEEecchhhcCHHHHhhccCCceecCcc
No 407
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.64 E-value=1.5e+02 Score=27.15 Aligned_cols=40 Identities=13% Similarity=0.018 Sum_probs=34.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCcch
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAG-LKVTFLNSKHNH 47 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rG-H~Vt~~~~~~~~ 47 (476)
|||++..=|+.|-..-..-|++.|.++| ++|.++-.+++.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~ 41 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDS 41 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 7899999999999887777799999887 999999987763
No 408
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.44 E-value=72 Score=29.32 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcH
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQL 86 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (476)
.|+|+++...+. ...|++.|...++.+++.+............. ...
T Consensus 2 ~~~ilvlGGT~D-----ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~-----------------------~~~----- 48 (257)
T COG2099 2 MMRILLLGGTSD-----ARALAKKLAAAPVDIILSSLTGYGAKLAEQIG-----------------------PVR----- 48 (257)
T ss_pred CceEEEEeccHH-----HHHHHHHhhccCccEEEEEcccccccchhccC-----------------------Cee-----
Confidence 466777653332 47899999999988877776433221111100 000
Q ss_pred HHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchH-------HHHHHHcCCCeEEEe
Q 011832 87 MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFV-------VDVATELEIPVIHFR 139 (476)
Q Consensus 87 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~-------~~vA~~l~iP~i~~~ 139 (476)
.....-.+.+.+++++. +.|+|| |...+.+ +.+|+..|||++.|-
T Consensus 49 -----~~G~l~~e~l~~~l~e~--~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 49 -----VGGFLGAEGLAAFLREE--GIDLLI-DATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred -----ecCcCCHHHHHHHHHHc--CCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 00011246688888887 778776 5555543 347899999999983
No 409
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.40 E-value=4.8e+02 Score=24.43 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=46.3
Q ss_pred HHHHHHhcCCceEEEECCCCCCCchhhH-HHHHHhhcCCceE------eeccChHHHhhccccccccccc-CchhHHHHH
Q 011832 310 FWHGLVDSKQRFLWVIRPDSVIGEGDAL-AELVEGTKERGLL------VSWVPQEEVLAHQAVAGFLTHS-GWNSTLESI 381 (476)
Q Consensus 310 ~~~a~~~~~~~~i~~~~~~~~~~~~~~l-~~~~~~~~~nv~~------~~~~pq~~lL~~~~~~~~I~HG-G~~s~~eal 381 (476)
+...+++.+..++.+....... .+ ..+.++++.--.+ .++=|..+.|+.++- +|.-. ..+-+.||.
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~----~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~sEAa 262 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPD----TVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCSEAA 262 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcH----HHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhHHHh
Confidence 4445566777777776544221 22 3333334332221 245599999987776 66555 467789999
Q ss_pred hhCCceecc
Q 011832 382 VAGVPMICW 390 (476)
Q Consensus 382 ~~GvP~l~i 390 (476)
..|+|+.+.
T Consensus 263 sTgkPv~~~ 271 (329)
T COG3660 263 STGKPVFIL 271 (329)
T ss_pred ccCCCeEEE
Confidence 999998764
No 410
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.31 E-value=2.4e+02 Score=27.94 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=34.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNH 47 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 47 (476)
.=|.|+..-+.|....+-.+|..+.++|..+.+++.+.+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 3456666778899999999999999999999999987664
No 411
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.27 E-value=1e+02 Score=24.62 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+..+|+++++|+. +...++.++.|.+.|.+++++..
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 4567889888877 45679999999999999999876
No 412
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.13 E-value=86 Score=22.71 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Q 011832 23 SMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 23 p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
--+.+|..|++.|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 35789999999999999998753
No 413
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=29.07 E-value=1.1e+02 Score=28.00 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=24.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.|.++++ ++.|.+ -..+++.|+++|++|+++..
T Consensus 11 ~k~ilIt-Gas~~I--G~~la~~l~~~G~~v~~~~r 43 (256)
T PRK06124 11 GQVALVT-GSARGL--GFEIARALAGAGAHVLVNGR 43 (256)
T ss_pred CCEEEEE-CCCchH--HHHHHHHHHHcCCeEEEEeC
Confidence 3444554 456666 67889999999999988876
No 414
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.03 E-value=1.5e+02 Score=24.24 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
+.||++...++.+|-.---=++..|...|++|.-.......+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 57899999999999999999999999999999998875444443
No 415
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=29.01 E-value=88 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
.|+|+.=|+.|-..-...||..|+++|++|.++=-++.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 46777667889999999999999999999999977654
No 416
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=28.81 E-value=1e+02 Score=26.21 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=27.9
Q ss_pred CEEEEEcCCCccCHHH-HHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNS-MLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p-~l~La~~L~~rGH~Vt~~~~ 43 (476)
||+|++=..-.|...- ...||..|.++||+|++.--
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl 37 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDL 37 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeeh
Confidence 6777776666677766 45688999999999998765
No 417
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=28.77 E-value=3.7e+02 Score=27.38 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCCceEEEECCCCCC--CchhhHHHHHHhhcCCceE-eeccChHHHhhccc-ccccccccCchhHH
Q 011832 303 KREQLIEFWHGLVDSKQRFLWVIRPDSVI--GEGDALAELVEGTKERGLL-VSWVPQEEVLAHQA-VAGFLTHSGWNSTL 378 (476)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~i~~~~~~~~~--~~~~~l~~~~~~~~~nv~~-~~~~pq~~lL~~~~-~~~~I~HGG~~s~~ 378 (476)
...++..+-+|+.+.+.--||+-..++.- +.+..|..+. .+..+.+ ..-+.--.+|.+.+ |-++-+|-| .
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~--~~~r~~ll~edfnpisll~~~dkvy~~ts~mg----f 238 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLS--QQHRVHLLAEDFNPISLLQNVDKVYCVTSQMG----F 238 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhc--cCceEEEecccCChHHHHHhcceeEEeecccc----H
Confidence 34567778889988888889986655331 2232333322 3455553 34444455666654 333444444 5
Q ss_pred HHHhhCCceeccCC
Q 011832 379 ESIVAGVPMICWPY 392 (476)
Q Consensus 379 eal~~GvP~l~iP~ 392 (476)
|||.+|+|+++..+
T Consensus 239 eall~~~~~~~fg~ 252 (671)
T COG3563 239 EALLCGKPLTTFGL 252 (671)
T ss_pred HHHhcCCceeeecc
Confidence 99999999998754
No 418
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=28.62 E-value=88 Score=31.12 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCCCCceEEEECCCcchHH----------HHHHHcCCCeEEEe
Q 011832 98 RPLLKQMLIDTSPPVSCIIGDACMEFVV----------DVATELEIPVIHFR 139 (476)
Q Consensus 98 ~~~l~~ll~~~~~~~DlvI~D~~~~~~~----------~vA~~l~iP~i~~~ 139 (476)
...+.+++++. +||++|+-+.+..+. .+.++++||.+.-.
T Consensus 65 ~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 65 VARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34556667777 899999988776322 25677999999865
No 419
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=28.57 E-value=56 Score=21.02 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 011832 418 DRNVVEKMVNDLMVERKEEFMRAADRM 444 (476)
Q Consensus 418 ~~~~l~~~i~~~l~~~~~~y~~~a~~~ 444 (476)
++++|.+||..+.+++ -+++++|++.
T Consensus 1 tee~l~~Ai~~v~~g~-~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK-MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS-S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4688999998887632 4677766654
No 420
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=28.52 E-value=1.2e+02 Score=28.11 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcc
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYT 54 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (476)
.--+++...|+.|.....++++...+++|..|.+++.....+.+.+..
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~ 70 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENA 70 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHH
Confidence 345788889999999999999999999999999999987766665444
No 421
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=28.52 E-value=88 Score=31.13 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCCCCceEEEECCCcchHH----------HHHHHcCCCeEEEe
Q 011832 98 RPLLKQMLIDTSPPVSCIIGDACMEFVV----------DVATELEIPVIHFR 139 (476)
Q Consensus 98 ~~~l~~ll~~~~~~~DlvI~D~~~~~~~----------~vA~~l~iP~i~~~ 139 (476)
...+.+++++. +||++|+-+.+..+. .+.++++||.+.-.
T Consensus 65 ~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 65 KAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44556667777 899999988776322 25667999999865
No 422
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=28.42 E-value=2.6e+02 Score=27.96 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=27.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
||||++-.+++-| +||+.|++.+-.-.++..+.|
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apgN 34 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPGN 34 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCCC
Confidence 7999999999999 589999987766666665555
No 423
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=28.39 E-value=97 Score=27.54 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
+.||.+=..++.|-.+-|+.=|+.|.++|-+|.+-.-.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 56888888999999999999999999999999987664
No 424
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=28.37 E-value=1.2e+02 Score=26.64 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 100 LLKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 100 ~l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
.+.+++++...+..++|.....- ++..+|+.+++|.|.+.|..
T Consensus 48 ~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 48 QLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 35666665522234777665555 78889999999999997754
No 425
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.35 E-value=1.2e+02 Score=27.77 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=25.3
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|..+.+.++++ ++ ++.|.+ -.++|+.|+++|++|.+...
T Consensus 1 m~~~l~~k~~l-It-Gas~gI--G~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 1 YSMRFKGKVAL-IT-GGTRGI--GRAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred CCCCcCCCEEE-Ee-CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 55554444444 44 233433 36789999999999988764
No 426
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=28.28 E-value=64 Score=30.57 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=24.2
Q ss_pred CEEEEEcCCCc--cCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFPLPCQ--SHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~~~~~--gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
|+||+....++ || .+.+|.++||+|+++-.-.+
T Consensus 1 ~~iLVtGGAGYIGSH------tv~~Ll~~G~~vvV~DNL~~ 35 (329)
T COG1087 1 MKVLVTGGAGYIGSH------TVRQLLKTGHEVVVLDNLSN 35 (329)
T ss_pred CeEEEecCcchhHHH------HHHHHHHCCCeEEEEecCCC
Confidence 56777765555 55 47889999999999876443
No 427
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=28.23 E-value=74 Score=30.53 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
|||+|+..+.. .+...++|.++||+|..+.+.+
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcCC
Confidence 78999876553 3677788899999987666533
No 428
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=28.21 E-value=1.1e+02 Score=27.88 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=22.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|.++++ |+.|.+ -..+++.|+++|++|.+...
T Consensus 11 k~vlIt-Ga~g~i--G~~ia~~l~~~G~~V~~~~r 42 (255)
T PRK07523 11 RRALVT-GSSQGI--GYALAEGLAQAGAEVILNGR 42 (255)
T ss_pred CEEEEE-CCcchH--HHHHHHHHHHcCCEEEEEeC
Confidence 344444 344444 67899999999999987654
No 429
>PRK07454 short chain dehydrogenase; Provisional
Probab=28.09 E-value=1.2e+02 Score=27.23 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
++||.++++ |+.|. --..+++.|+++|++|++++-
T Consensus 4 ~~~k~vlIt-G~sg~--iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 4 NSMPRALIT-GASSG--IGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCCEEEEe-CCCch--HHHHHHHHHHHCCCEEEEEeC
Confidence 346666666 44453 357889999999999999875
No 430
>PRK10586 putative oxidoreductase; Provisional
Probab=28.09 E-value=3.6e+02 Score=26.48 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=29.0
Q ss_pred CCCCCEEEEEcCCCc--cCHHHHHHHHHHHHhCC-CEEEEEeCCcchhh
Q 011832 4 KPKSPHILIFPLPCQ--SHMNSMLKLAEIFGLAG-LKVTFLNSKHNHER 49 (476)
Q Consensus 4 ~~~~~~il~~~~~~~--gH~~p~l~La~~L~~rG-H~Vt~~~~~~~~~~ 49 (476)
|+..||+...| +-+ | -.-...|++.+.+.| .+|.+++.+...+.
T Consensus 2 ~~~~~~~~~~p-~~y~~G-~ga~~~l~~~~~~~g~~~~lvv~g~~~~~~ 48 (362)
T PRK10586 2 SHNPIRVVVGP-ANYFSH-PGSIDHLHDFFTDEQLSRAVWIYGERAIAA 48 (362)
T ss_pred CcccchheeCC-cceEEC-cCHHHHHHHHHHhcCCCeEEEEEChHHHHH
Confidence 56667765555 333 3 245678888888877 78888887554433
No 431
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=28.06 E-value=1.1e+02 Score=24.54 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=28.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 11 LIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 11 l~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+++..|..++-.-+..+++.|+++|+.|..+..+.
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 36 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPG 36 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45666777777779999999999999999986643
No 432
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=28.02 E-value=92 Score=29.01 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=24.1
Q ss_pred CeEEEEEecccccc-CHHHHHHHHHHHHhc--CCceEEEECCC
Q 011832 289 RSVLYVSFGSITLL-KREQLIEFWHGLVDS--KQRFLWVIRPD 328 (476)
Q Consensus 289 ~~~I~vs~Gs~~~~-~~~~~~~~~~a~~~~--~~~~i~~~~~~ 328 (476)
+.+|++||||.... ....+..+.+.++.. +..+.|.+...
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 35899999998744 333677777777654 56888888643
No 433
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.99 E-value=1.8e+02 Score=28.59 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred cccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHH------------HHhhcCCceEe--eccChHH---Hh
Q 011832 298 SITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAEL------------VEGTKERGLLV--SWVPQEE---VL 360 (476)
Q Consensus 298 s~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~------------~~~~~~nv~~~--~~~pq~~---lL 360 (476)
|....+..-+..+++++...+..+...+..+... ..+ .....+++.+. .|+||.+ ||
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~------~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LL 261 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRAL------NSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLL 261 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccH------HHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHH
Q ss_pred hcccccccccccCch------hHHHHHhhCCcee
Q 011832 361 AHQAVAGFLTHSGWN------STLESIVAGVPMI 388 (476)
Q Consensus 361 ~~~~~~~~I~HGG~~------s~~eal~~GvP~l 388 (476)
-.||+ | |..-|..+|+|.|
T Consensus 262 w~cD~---------NfVRGEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 262 WACDF---------NFVRGEDSFVRAQWAGKPFV 286 (374)
T ss_pred HhCcc---------ceEecchHHHHHHHhCCCce
No 434
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=27.90 E-value=3.4e+02 Score=29.13 Aligned_cols=39 Identities=3% Similarity=-0.038 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEecC
Q 011832 101 LKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRAI 141 (476)
Q Consensus 101 l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~~ 141 (476)
+.+.+++. +||++|+=.+.. .-..+-......++-++++
T Consensus 67 ~~~~l~~~--~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 67 WVERIREL--APDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHhc--CCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 34556666 889999766544 4445666666777888776
No 435
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=27.82 E-value=4.2e+02 Score=23.25 Aligned_cols=102 Identities=10% Similarity=0.078 Sum_probs=53.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC--EEEEEeCCcc-hhhh--hhcccccccccCCCCeeEEecCC-CCCCCCCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGL--KVTFLNSKHN-HERL--IRYTDIHDRFLQYSEFQFKTISD-GLPADHPR 81 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH--~Vt~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~ 81 (476)
|||+|+..+..+=+ .++.+.+.+.++ +|.++.+... .... .+.. ++.+..++. .++.
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~----------gip~~~~~~~~~~~---- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISNKPDAYGLERAAQA----------GIPTFVLSLKDFPS---- 63 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEECCccchHHHHHHHc----------CCCEEEECccccCc----
Confidence 68999887665544 466667777665 6666544322 2111 1111 244433321 1110
Q ss_pred CCCcHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcc-hHHHHHHHcCCCeEEEec
Q 011832 82 AGDQLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACME-FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~-~~~~vA~~l~iP~i~~~~ 140 (476)
.....+.+.+.+++. ++|++|+-.+.. ....+-......++-+++
T Consensus 64 ------------~~~~~~~~~~~l~~~--~~D~iv~~~~~~il~~~~l~~~~~~~iNiHp 109 (190)
T TIGR00639 64 ------------REAFDQAIIEELRAH--EVDLVVLAGFMRILGPTFLSRFAGRILNIHP 109 (190)
T ss_pred ------------hhhhhHHHHHHHHhc--CCCEEEEeCcchhCCHHHHhhccCCEEEEeC
Confidence 111234566777777 889999876654 334444444445555544
No 436
>PRK08163 salicylate hydroxylase; Provisional
Probab=27.72 E-value=68 Score=31.68 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
++++|+|+..|-. -+.+|-.|+++|++|+++--.
T Consensus 3 ~~~~V~IvGaGia-----Gl~~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 3 KVTPVLIVGGGIG-----GLAAALALARQGIKVKLLEQA 36 (396)
T ss_pred CCCeEEEECCcHH-----HHHHHHHHHhCCCcEEEEeeC
Confidence 5678999986643 478888999999999999763
No 437
>PRK12827 short chain dehydrogenase; Provisional
Probab=27.58 E-value=1.1e+02 Score=27.61 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.|++++. |+.|.+- ..+|+.|+++||+|+++..
T Consensus 6 ~~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLIT--GGSGGLG--RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEcC
Confidence 4566554 4555553 6899999999999988653
No 438
>PRK13057 putative lipid kinase; Reviewed
Probab=27.55 E-value=2.5e+02 Score=26.42 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=24.0
Q ss_pred hcccccccccccCchhHHHHH----hhCCceeccCC
Q 011832 361 AHQAVAGFLTHSGWNSTLESI----VAGVPMICWPY 392 (476)
Q Consensus 361 ~~~~~~~~I~HGG~~s~~eal----~~GvP~l~iP~ 392 (476)
...++ +|.-||=||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 34455 99999999999985 34789999996
No 439
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=27.52 E-value=8.1e+02 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.0
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 9 HILIFPLPC-QSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 9 ~il~~~~~~-~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.|++.+..+ .|-..-.+.|++.|.++|.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 466665554 58899999999999999999999865
No 440
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=27.50 E-value=1.5e+02 Score=25.55 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccc
Q 011832 288 VRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAG 367 (476)
Q Consensus 288 ~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 367 (476)
.+.+-.+.+|.+. +.+.+-++.+|.+++..-+... ..+.+ .. ....+.+..++|+.+|+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~------~~~~~----~~--~~~~~~~l~ell~~aDi-- 94 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK------PEEGA----DE--FGVEYVSLDELLAQADI-- 94 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH------HHHHH----HH--TTEEESSHHHHHHH-SE--
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC------hhhhc----cc--ccceeeehhhhcchhhh--
Confidence 4568888888776 4466777777888766644331 00101 11 11266688899999998
Q ss_pred cccccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecc---c--ccCHHHHHHHHH
Q 011832 368 FLTHSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMK---D--VCDRNVVEKMVN 427 (476)
Q Consensus 368 ~I~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~---~--~~~~~~l~~~i~ 427 (476)
++.|.-.+. ...+..|+..+ ++++=|..+- + -++.+.|.++++
T Consensus 95 v~~~~plt~----------------~T~~li~~~~l-~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 95 VSLHLPLTP----------------ETRGLINAEFL-AKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp EEE-SSSST----------------TTTTSBSHHHH-HTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhcccc----------------ccceeeeeeee-eccccceEEEeccchhhhhhhHHHHHHh
Confidence 877765432 23567788888 7777664442 2 567777777664
No 441
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=27.40 E-value=96 Score=30.08 Aligned_cols=33 Identities=12% Similarity=-0.048 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.|+|++.. +.|.+- ..+++.|+++||+|+.+.-
T Consensus 4 ~k~ilItG--atG~IG--~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 4 GKKVLVTG--HTGFKG--SWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CCEEEEEC--CCChhH--HHHHHHHHHCCCEEEEEeC
Confidence 46766654 444333 7889999999999988764
No 442
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=27.33 E-value=69 Score=30.65 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
|||+|+..|..| ..+|..|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 589999876655 46788899999999999863
No 443
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.26 E-value=86 Score=32.49 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEe
Q 011832 99 PLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFR 139 (476)
Q Consensus 99 ~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~ 139 (476)
..+.+.+++. +||+||.+. ....+|+++|||++.++
T Consensus 364 ~ei~~~I~~~--~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARV--EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhc--CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3445666666 799999986 34667899999998875
No 444
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=27.22 E-value=1e+02 Score=28.15 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=26.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCc
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLA--GLKVTFLNSKH 45 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~r--GH~Vt~~~~~~ 45 (476)
|++--.|+.+=+.-...|++.|.++ ||+|.++-++.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 4444334333447899999999999 99999999854
No 445
>PRK12744 short chain dehydrogenase; Provisional
Probab=27.09 E-value=1.3e+02 Score=27.54 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=24.8
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|..+.-+-|.++++.++.| =-..+|+.|+++|++|.++..
T Consensus 1 ~~~~~l~~k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKN---LGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCCCCCcEEEEECCCch---HHHHHHHHHHHCCCcEEEEec
Confidence 5544323245555533332 456799999999999776653
No 446
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=27.01 E-value=88 Score=27.16 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=27.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
||++.-.|+. ...-...+.+.|.++|++|.++.++.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEEChH
Confidence 5666655544 45566799999999999999999853
No 447
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.98 E-value=1.4e+02 Score=24.46 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=37.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhc
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRY 53 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (476)
+|++.+..+-+|-.----++..|.++|++|.-+......+.+.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 478888999999999999999999999999999886555555444
No 448
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.97 E-value=93 Score=31.37 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=26.4
Q ss_pred HHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEec
Q 011832 101 LKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRA 140 (476)
Q Consensus 101 l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~ 140 (476)
+.+++++. +||++|.+.. ...+|+++|+|++.++.
T Consensus 362 ~~~~i~~~--~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 362 VGDMIART--EPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHhh--CCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 44555565 7899999863 45678999999998854
No 449
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=26.89 E-value=1.1e+02 Score=26.57 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=27.4
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHh-CCCEEEEEeCCcchhhh
Q 011832 10 ILIFPLPCQSHMNS-MLKLAEIFGL-AGLKVTFLNSKHNHERL 50 (476)
Q Consensus 10 il~~~~~~~gH~~p-~l~La~~L~~-rGH~Vt~~~~~~~~~~~ 50 (476)
|++.-.++ ||... ...+.++|.+ +||+|.++.++ ..+++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~-~A~~v 42 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSK-AGEQV 42 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECH-hHHHH
Confidence 44444344 77766 8899999985 59999999995 44433
No 450
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=26.83 E-value=1.2e+02 Score=27.42 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
++|+++++..+. .=-.++|+.|+++|++|+++....
T Consensus 4 ~~~~ilITGas~---GiG~aia~~l~~~G~~v~~~~~~~ 39 (251)
T COG1028 4 SGKVALVTGASS---GIGRAIARALAREGARVVVAARRS 39 (251)
T ss_pred CCCEEEEeCCCC---HHHHHHHHHHHHCCCeEEEEcCCC
Confidence 456777775555 457899999999999999888743
No 451
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.83 E-value=2.8e+02 Score=23.67 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=64.0
Q ss_pred ChHHHhh-cccccccccccC---chhHHHHHhhCCceeccCCcc-cchhhHHHHHhhhcceeecc-cccCHHHHHHHHHH
Q 011832 355 PQEEVLA-HQAVAGFLTHSG---WNSTLESIVAGVPMICWPYFA-DQQINSRFVSEVWNLGLDMK-DVCDRNVVEKMVND 428 (476)
Q Consensus 355 pq~~lL~-~~~~~~~I~HGG---~~s~~eal~~GvP~l~iP~~~-DQ~~na~~v~~~~G~G~~~~-~~~~~~~l~~~i~~ 428 (476)
+|..|+. ||++.+-+--.| .-|+.|--.+|.=.+.==-+. =+..|+++. ++.|.=..+- +..+.+.|.++..+
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVkg~~k~~Il~a~~~ 142 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVKGNTKDTILAAFER 142 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeecCCCHHHHHHHHHH
Confidence 4665554 888743333333 347788888887654321122 156799999 8888875554 56788888888888
Q ss_pred HHh-HhHHHHHHHHHHHHHHHHH
Q 011832 429 LMV-ERKEEFMRAADRMATMART 450 (476)
Q Consensus 429 ~l~-~~~~~y~~~a~~~~~~~~~ 450 (476)
=|+ ++..+++.++.++.++.+-
T Consensus 143 Rl~n~~e~E~~tAl~eI~rIA~~ 165 (176)
T COG3195 143 RLDNDREQEFATALAEIERIALL 165 (176)
T ss_pred HhcccHHHHHHHHHHHHHHHHHH
Confidence 777 4567888888888877543
No 452
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=26.74 E-value=1e+02 Score=27.49 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCceEEEECCCcc-------hHHHHHHHcCCCeEEEec
Q 011832 99 PLLKQMLIDTSPPVSCIIGDACME-------FVVDVATELEIPVIHFRA 140 (476)
Q Consensus 99 ~~l~~ll~~~~~~~DlvI~D~~~~-------~~~~vA~~l~iP~i~~~~ 140 (476)
+.+.++++....++|+|++|.+.. .|..++-.+++|+|.+.=
T Consensus 77 P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK 125 (206)
T PF04493_consen 77 PCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAK 125 (206)
T ss_dssp HHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEES
T ss_pred HHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeC
Confidence 556666665555899999998765 234566777899999843
No 453
>PRK08309 short chain dehydrogenase; Provisional
Probab=26.71 E-value=1.2e+02 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=22.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|+++++. ++ | +. .++++.|+++|++|++++-
T Consensus 1 m~vlVtG-Gt-G-~g--g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 1 MHALVIG-GT-G-ML--KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CEEEEEC-cC-H-HH--HHHHHHHHHCcCEEEEEEC
Confidence 5655554 33 5 33 4699999999999999875
No 454
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=26.65 E-value=1.7e+02 Score=27.20 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=55.0
Q ss_pred EEEEEcCCCcc----CHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCC
Q 011832 9 HILIFPLPCQS----HMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGD 84 (476)
Q Consensus 9 ~il~~~~~~~g----H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 84 (476)
-|++.|..+.. ...-+.+|++.|.++|++|.+++.+...+..++.... +. . ..........
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~---------~~----~--~~~~~~~~~~ 187 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAA---------LG----G--PRVVNLAGKT 187 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHh---------cC----C--CccccCcCCC
Confidence 35555544322 1235899999999999999988875433322221100 00 0 0000000000
Q ss_pred cHHHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEec
Q 011832 85 QLMEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRA 140 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~ 140 (476)
+ -.++..++... |++|+-.. ..+.+|..+|+|++.+..
T Consensus 188 ~------------l~e~~~li~~~----~l~I~~Ds--g~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 188 S------------LRELAALLARA----DLVVTNDS--GPMHLAAALGTPTVALFG 225 (279)
T ss_pred C------------HHHHHHHHHhC----CEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 1 12344555544 88886533 568889999999999965
No 455
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.63 E-value=87 Score=25.67 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGL-KVTFLNS 43 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH-~Vt~~~~ 43 (476)
.++..++.++....+|+.-+..+.++|.++|. ++.++..
T Consensus 51 e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 51 EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45778999998889999999999999999997 5656555
No 456
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=26.58 E-value=4.8e+02 Score=25.95 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC-CEEEEEeCC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAG-LKVTFLNSK 44 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rG-H~Vt~~~~~ 44 (476)
.|||+++..|..|+ .+|..|+++| ++||++.-.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCC
Confidence 36889888766564 5899999999 999999973
No 457
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=26.57 E-value=91 Score=31.75 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+.+||+|+..+..| +..+|+.|.++||+|+..-.
T Consensus 6 ~~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D~ 39 (461)
T PRK00421 6 RIKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSDL 39 (461)
T ss_pred CCCEEEEEEEchhh----HHHHHHHHHhCCCeEEEECC
Confidence 45689999988766 44589999999999988764
No 458
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.53 E-value=54 Score=34.50 Aligned_cols=53 Identities=13% Similarity=0.274 Sum_probs=38.6
Q ss_pred cccccccccccCchhHHHHHhh----CCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhH
Q 011832 362 HQAVAGFLTHSGWNSTLESIVA----GVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVE 432 (476)
Q Consensus 362 ~~~~~~~I~HGG~~s~~eal~~----GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~ 432 (476)
.+++ +|+-||=||++.+.+. ++|++.+-+ -+ +|..- +++.+++.+++.+++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~--------G~------lGFL~--~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINM--------GT------VGFLT--EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC--------CC------CCcCc--ccCHHHHHHHHHHHHcC
Confidence 3455 9999999999999774 778888832 11 22221 56788899999999884
No 459
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.48 E-value=1.1e+02 Score=27.92 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=26.7
Q ss_pred CCCCCCCCEEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 1 MEEKPKSPHILIFPLPCQ-SHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~-gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|.-+.+. |+++++.++. +-+ -.++|+.|+++|++|.+..-
T Consensus 1 ~~~~l~~-k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 1 MSGILSG-KKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CccccCC-CEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEecC
Confidence 5555533 5666665542 222 38999999999999987753
No 460
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.40 E-value=1.3e+02 Score=27.96 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=33.2
Q ss_pred CCEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcc
Q 011832 7 SPHILIFP--LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYT 54 (476)
Q Consensus 7 ~~~il~~~--~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 54 (476)
..|++.++ -++.|----...||..|++.|.+|-++=.+-....+....
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l 105 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRML 105 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHh
Confidence 34444444 4455777889999999999999999987764444443333
No 461
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=26.25 E-value=5.3e+02 Score=23.96 Aligned_cols=35 Identities=9% Similarity=0.236 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.+|||+++.+++...-. ..++.|.++|.+|.++..
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~ 36 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHI 36 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEee
Confidence 35799999998885443 557888899999998876
No 462
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=26.21 E-value=1.3e+02 Score=28.49 Aligned_cols=41 Identities=5% Similarity=-0.021 Sum_probs=32.5
Q ss_pred CCCEE-EEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 6 KSPHI-LIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 6 ~~~~i-l~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
++||+ .|+.=|+.|-..-...||-.|++.|++|.++-.++.
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 34555 455566778999999999999999999999976554
No 463
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.17 E-value=94 Score=30.90 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
+.+||++.-.|+.+= .-...+.+.|.+.|++|.++.++. ..++
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~-A~~f 44 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEA-AKKF 44 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHh-HHHH
Confidence 456888877665544 558999999999999999999854 4443
No 464
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=26.15 E-value=1.4e+02 Score=27.31 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=26.8
Q ss_pred CCCCCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 1 MEEKPKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 1 ~~~~~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|..+.-+-|+++++.+ .|. =-.++|+.|+++|++|+++..
T Consensus 1 ~~~~~l~~k~~lItGa-s~g--IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 1 MQLFDLNGKVAIITGC-NTG--LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCCcccCCCEEEEeCC-Cch--HHHHHHHHHHHCCCEEEEecC
Confidence 4433323466777744 443 457889999999999988754
No 465
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.10 E-value=90 Score=30.21 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=33.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
..++|+..++.|-..=..++|++|.++|+.|.+++....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 567888888888888889999999999999999987544
No 466
>PRK13236 nitrogenase reductase; Reviewed
Probab=26.04 E-value=1.4e+02 Score=28.36 Aligned_cols=42 Identities=5% Similarity=0.042 Sum_probs=32.9
Q ss_pred CCCCEEEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 5 PKSPHILIF-PLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 5 ~~~~~il~~-~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
.+.||++-+ .=|+.|--.....||-.|+++|++|.++-.+..
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 455666555 345668889999999999999999999966544
No 467
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=26.04 E-value=69 Score=30.25 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHHHHHhcCCceEEEECCCCCCCchhhHHHHHHhhcCCceEeeccChHHHhhcccccccccccCchhHHHH
Q 011832 301 LLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEGDALAELVEGTKERGLLVSWVPQEEVLAHQAVAGFLTHSGWNSTLES 380 (476)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HGG~~s~~ea 380 (476)
..+.+..+.+.+++..-..+.||.++++. +-.++.++++...+-.+|+. ||-..-..+++-+
T Consensus 45 gs~~~Ra~dL~~a~~d~~i~aI~~~rGGy----------------g~~rlL~~ld~~~i~~~pK~--~iGySDiTaL~~a 106 (284)
T PF02016_consen 45 GSDEERAEDLNEAFADPEIDAIWCARGGY----------------GANRLLPYLDYDAIRKNPKI--FIGYSDITALHNA 106 (284)
T ss_dssp S-HHHHHHHHHHHHHSTTEEEEEES--SS-----------------GGGGGGGCHHHHHHHSG-E--EEE-GGGHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEeeccc----------------cHHHHHhcccccccccCCCE--EEEecchHHHHHH
Confidence 34556677799999988889999998762 23445566666777777777 8888777777777
Q ss_pred Hhh--CCceeccCCc
Q 011832 381 IVA--GVPMICWPYF 393 (476)
Q Consensus 381 l~~--GvP~l~iP~~ 393 (476)
++. |.+.+--|..
T Consensus 107 l~~~~g~~t~hGp~~ 121 (284)
T PF02016_consen 107 LYAKTGLVTFHGPML 121 (284)
T ss_dssp HHHHHTBEEEES--H
T ss_pred HHHhCCCeEEEcchh
Confidence 654 6666666653
No 468
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=26.03 E-value=1.5e+02 Score=27.03 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 011832 15 LPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHE 48 (476)
Q Consensus 15 ~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (476)
=|+-|-.--.+.||.+|+++|-.|+++=.+++..
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 4577999999999999999999999999988754
No 469
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=25.97 E-value=1e+02 Score=28.43 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhcccccccccCCCCeeEEecCCCCCCCCCCCCCcH
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHERLIRYTDIHDRFLQYSEFQFKTISDGLPADHPRAGDQL 86 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 86 (476)
.++|+++...+-| ..||+.|.++|+.|++.+...... .... ...... +.+.
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~-----------~~~v~~-------G~l~----- 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADL-----------PGPVRV-------GGFG----- 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccC-----------CceEEE-------CCCC-----
Confidence 3578888755555 478999999999888766533211 0000 011110 1010
Q ss_pred HHHHHHHHhhchHHHHHHHhcCCCCceEEEECCCcchHH-------HHHHHcCCCeEEEec
Q 011832 87 MEMFDSLSLNTRPLLKQMLIDTSPPVSCIIGDACMEFVV-------DVATELEIPVIHFRA 140 (476)
Q Consensus 87 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~D~~~~~~~-------~vA~~l~iP~i~~~~ 140 (476)
-...+.+++.+. ++++|| |...+.+. .+|+.+|||++.|.-
T Consensus 53 ----------~~~~l~~~l~~~--~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 53 ----------GAEGLAAYLREE--GIDLVI-DATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred ----------CHHHHHHHHHHC--CCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 134567777776 788866 65665443 468999999999854
No 470
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.97 E-value=1.5e+02 Score=24.07 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=28.4
Q ss_pred EEEEcCCC-ccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 011832 10 ILIFPLPC-QSHMNSMLKLAEIFGLAGLKVTFLNSKHN 46 (476)
Q Consensus 10 il~~~~~~-~gH~~p~l~La~~L~~rGH~Vt~~~~~~~ 46 (476)
++++..|. .-.+...+-+...|.++|.+||+.+++.-
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhh
Confidence 44444553 36677789999999999999999998543
No 471
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.95 E-value=1e+02 Score=32.02 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEec
Q 011832 100 LLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRA 140 (476)
Q Consensus 100 ~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~ 140 (476)
.+.+.+++. +||+||.+. ....+|+++|||++.++.
T Consensus 355 ei~~~i~~~--~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhc--CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 444555565 799999985 457789999999998754
No 472
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.91 E-value=76 Score=31.57 Aligned_cols=38 Identities=26% Similarity=0.213 Sum_probs=29.8
Q ss_pred CCEEEEEcCC---CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 7 SPHILIFPLP---CQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 7 ~~~il~~~~~---~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
...++|-|.+ .-||+.|+..|. .|.++||+|+++....
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGDA 74 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEeccc
Confidence 4567777766 449999988775 6889999999998853
No 473
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=25.87 E-value=94 Score=28.59 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.8
Q ss_pred CceEEE-ECCCcc-hHHHHHHHcCCCeEEEecCc
Q 011832 111 PVSCII-GDACME-FVVDVATELEIPVIHFRAIS 142 (476)
Q Consensus 111 ~~DlvI-~D~~~~-~~~~vA~~l~iP~i~~~~~~ 142 (476)
.||+|| +|+..- -++.=|.++|||+|.+.-+.
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTD 151 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCC
Confidence 667766 677666 66778999999999997643
No 474
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=25.85 E-value=73 Score=35.65 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
.++.||+|+..|-- -+..|..|+.+||+||++-.
T Consensus 381 ~tgKKVaVVGaGPA-----GLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPA-----GFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCCeEEEECcCHH-----HHHHHHHHHhCCCeEEEEcc
Confidence 45679999986533 48899999999999999985
No 475
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.84 E-value=1.3e+02 Score=22.36 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.2
Q ss_pred CEEEEEcCCCc--cCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQ--SHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~--gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
-+|+++|.... .+..-...++..|.+.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 36888887653 4666789999999999999988543
No 476
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=25.79 E-value=4.6e+02 Score=27.58 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.5
Q ss_pred cccccccCch------hHHHHHhhCCceeccC
Q 011832 366 AGFLTHSGWN------STLESIVAGVPMICWP 391 (476)
Q Consensus 366 ~~~I~HGG~~------s~~eal~~GvP~l~iP 391 (476)
..+++|.|-| .+.+|...++|+|+|.
T Consensus 66 gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 66 SMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred EEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 3388888855 6789999999999995
No 477
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=25.78 E-value=1.2e+02 Score=29.59 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 6 KSPHILIFPLPCQS-H---MNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 6 ~~~~il~~~~~~~g-H---~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
++|||+++..|-.+ | +.....+++.|.+.||+|..+...
T Consensus 2 ~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~ 44 (343)
T PRK14568 2 NRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGIT 44 (343)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEEC
Confidence 47899988854332 2 355778899999999999987653
No 478
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=25.68 E-value=1.2e+02 Score=29.28 Aligned_cols=40 Identities=8% Similarity=0.017 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 6 KSPHILIFPLPCQS-H---MNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 6 ~~~~il~~~~~~~g-H---~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+++||+++..|..+ | +....++++.|.+.||+|..+....
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECC
Confidence 36789888844332 2 3557889999999999999887543
No 479
>PRK05693 short chain dehydrogenase; Provisional
Probab=25.62 E-value=1.1e+02 Score=28.37 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=23.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
||.++++ |+.|-+- ..+++.|+++|++|+..+-
T Consensus 1 mk~vlIt-GasggiG--~~la~~l~~~G~~V~~~~r 33 (274)
T PRK05693 1 MPVVLIT-GCSSGIG--RALADAFKAAGYEVWATAR 33 (274)
T ss_pred CCEEEEe-cCCChHH--HHHHHHHHHCCCEEEEEeC
Confidence 4556665 4445443 5888999999999988764
No 480
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=25.61 E-value=84 Score=24.47 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 011832 22 NSMLKLAEIFGLAGLKVTFLNSKHNHERL 50 (476)
Q Consensus 22 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 50 (476)
.|.+.|+++|.++|.+|.++=|-......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 79999999999999999998875443333
No 481
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=25.57 E-value=1.1e+02 Score=31.93 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEe
Q 011832 100 LLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFR 139 (476)
Q Consensus 100 ~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~ 139 (476)
.+.+.+++. +||+||.+. ....+|+++|||++.++
T Consensus 353 el~~~i~~~--~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 445555665 789999775 45779999999998875
No 482
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=25.53 E-value=66 Score=30.72 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
.|||+|+..|+-|=+ +|-.|.+.||+||++...
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 589999999988754 466688899999999873
No 483
>PRK08939 primosomal protein DnaI; Reviewed
Probab=25.50 E-value=1e+02 Score=29.50 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=35.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 011832 7 SPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKHNHE 48 (476)
Q Consensus 7 ~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 48 (476)
...+.++..++.|-..-+.++|.+|.++|..|+++..+....
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 346888888888999999999999999999999998754433
No 484
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.49 E-value=2.4e+02 Score=24.34 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 011832 436 EFMRAADRMATMARTTANEGGP 457 (476)
Q Consensus 436 ~y~~~a~~~~~~~~~~~~~~g~ 457 (476)
+.++......+.+.++..+|.+
T Consensus 21 e~~e~l~~Y~e~f~d~~~~G~s 42 (181)
T PF08006_consen 21 EREEILEYYEEYFDDAGEEGKS 42 (181)
T ss_pred HHHHHHHHHHHHHHHhhhCCCC
Confidence 4555555555555554434433
No 485
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.48 E-value=1.5e+02 Score=25.00 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=50.2
Q ss_pred ccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011832 389 CWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMVNDLMVERKEEFMRAADRMATMARTTANEGGPSYCNLDRLIDD 468 (476)
Q Consensus 389 ~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i~~~l~~~~~~y~~~a~~~~~~~~~~~~~~g~~~~~~~~~i~~ 468 (476)
..|+...+..+|+.++++ .-++. .-..+.|.+.+.+++.| +|.=+-++.+++..+..+ |......+.+++-+
T Consensus 77 pyPWt~~~L~aa~el~ee-~eeLs---~deke~~~~sl~dL~~d-~PkT~vA~~rfKk~~~K~---g~~v~~~~~dIlVd 148 (158)
T PF10083_consen 77 PYPWTENALEAANELIEE-DEELS---PDEKEQFKESLPDLTKD-TPKTKVAATRFKKILSKA---GSIVGDAIRDILVD 148 (158)
T ss_pred CCchHHHHHHHHHHHHHH-hhcCC---HHHHHHHHhhhHHHhhc-CCccHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 478888899999988653 11111 23558899999999984 377888888888887775 44445555555544
Q ss_pred H
Q 011832 469 I 469 (476)
Q Consensus 469 ~ 469 (476)
+
T Consensus 149 v 149 (158)
T PF10083_consen 149 V 149 (158)
T ss_pred H
Confidence 3
No 486
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=25.42 E-value=80 Score=34.88 Aligned_cols=35 Identities=23% Similarity=0.060 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 5 PKSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
++..||+|+..+..| +..||+.|.++|++|+..-.
T Consensus 2 ~~~~~i~viG~G~sG----~salA~~L~~~G~~V~~sD~ 36 (809)
T PRK14573 2 MKSLFYHFIGIGGIG----MSALAHILLDRGYSVSGSDL 36 (809)
T ss_pred CCcceEEEEEecHHh----HHHHHHHHHHCCCeEEEECC
Confidence 344579999988766 77789999999999998654
No 487
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=25.40 E-value=78 Score=28.73 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=21.6
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 12 IFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 12 ~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+++..+.| .--.++|+.|+++|++|+++..
T Consensus 18 ~itN~SSG--gIG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 18 SITNHSTG--HLGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred eecCCccc--HHHHHHHHHHHHCCCEEEEEcC
Confidence 34444444 2357899999999999998753
No 488
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.26 E-value=79 Score=31.81 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCceEEEECCCcchHHHHHHHcCCCeEEEec
Q 011832 100 LLKQMLIDTSPPVSCIIGDACMEFVVDVATELEIPVIHFRA 140 (476)
Q Consensus 100 ~l~~ll~~~~~~~DlvI~D~~~~~~~~vA~~l~iP~i~~~~ 140 (476)
.+.++++.. +||++|.... ...+|+++|||++.+..
T Consensus 360 e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~~ 395 (421)
T cd01976 360 ELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMHS 395 (421)
T ss_pred HHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCCc
Confidence 455666666 8999998865 56789999999987753
No 489
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.22 E-value=1.6e+02 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.021 Sum_probs=23.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
+.++++ |+.|.+ -..+++.|+++||+|+++..
T Consensus 5 ~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeC
Confidence 444444 555644 67889999999999998875
No 490
>PLN02487 zeta-carotene desaturase
Probab=25.20 E-value=1.1e+02 Score=32.10 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 011832 6 KSPHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSKH 45 (476)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~~ 45 (476)
+++||+|+..+ .--+..|..|.++||+|+++-...
T Consensus 74 ~~~~v~iiG~G-----~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 74 PKLKVAIIGAG-----LAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CCCeEEEECCC-----HHHHHHHHHHHhCCCeeEEEecCC
Confidence 34689888643 337889999999999999998743
No 491
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=25.12 E-value=61 Score=31.18 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=31.7
Q ss_pred HHhhcccccccccccCchhHHHHHh---hCCceeccCCcccc
Q 011832 358 EVLAHQAVAGFLTHSGWNSTLESIV---AGVPMICWPYFADQ 396 (476)
Q Consensus 358 ~lL~~~~~~~~I~HGG~~s~~eal~---~GvP~l~iP~~~DQ 396 (476)
+-|..-++.++|.=||-+|..-|.. +|+|++++|-..|=
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTIDN 127 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTIDN 127 (317)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEecccccC
Confidence 4566778889999999999877754 59999999986654
No 492
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=25.11 E-value=5.1e+02 Score=23.33 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=34.0
Q ss_pred hhhhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcCCceE
Q 011832 277 RSCIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFL 322 (476)
Q Consensus 277 ~~~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 322 (476)
+.+.+|+... .+.+.||=+-|..+-.....++..++|+.+|..+.
T Consensus 22 ~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 22 PFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred HHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 3455666553 55799998888776667788889999999997654
No 493
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.08 E-value=81 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=25.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
||+|+..|..| ..+|..|+.+||+|+++...
T Consensus 7 ~V~ViGaG~mG-----~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 7 RVGVVGAGQMG-----AGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred EEEEEcccHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 79999877665 47788999999999999874
No 494
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=25.07 E-value=1.2e+02 Score=27.82 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=28.8
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 011832 10 ILIFP-LPCQSHMNSMLKLAEIFGLAGLKVTFLNSK 44 (476)
Q Consensus 10 il~~~-~~~~gH~~p~l~La~~L~~rGH~Vt~~~~~ 44 (476)
|++.. -|+.|-..-..+||..|++.|++|..+=-.
T Consensus 4 iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 4 IAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 33333 567799999999999999999999997664
No 495
>PRK07773 replicative DNA helicase; Validated
Probab=25.06 E-value=1.5e+02 Score=33.20 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchhhhh
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLA-GLKVTFLNSKHNHERLI 51 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~ 51 (476)
|++...|+.|-....+.+|...+.+ |..|.|++-+-..+.+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 5667789999999999999998865 88999999876655543
No 496
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.88 E-value=1.7e+02 Score=21.31 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 011832 10 ILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLN 42 (476)
Q Consensus 10 il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~ 42 (476)
+++...++.|--.-...++..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666677888889999999999999998877
No 497
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=24.76 E-value=1.6e+02 Score=29.02 Aligned_cols=43 Identities=12% Similarity=-0.095 Sum_probs=23.0
Q ss_pred hhhhhcCCCCCeEEEEEeccccccCHHHHHHHHHHHHhcCCceEE
Q 011832 279 CIEWLGKQPVRSVLYVSFGSITLLKREQLIEFWHGLVDSKQRFLW 323 (476)
Q Consensus 279 ~~~~l~~~~~~~~I~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 323 (476)
+.+.+.....+++++|+-++.. ....++.+.+.|+..+..+.+
T Consensus 14 l~~~~~~~~~~r~livt~~~~~--~~g~~~~v~~~L~~~gi~~~~ 56 (375)
T cd08194 14 TGAVLADLGGKRPLIVTDKVMV--KLGLVDKLTDSLKKEGIESAI 56 (375)
T ss_pred HHHHHHHcCCCeEEEEcCcchh--hcchHHHHHHHHHHCCCeEEE
Confidence 3344443333456667633332 233556677888877766543
No 498
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=24.73 E-value=88 Score=29.36 Aligned_cols=31 Identities=19% Similarity=-0.097 Sum_probs=23.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 8 PHILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 8 ~~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|||+|+..|.. -..+|..|.++||+|+++..
T Consensus 1 m~I~IIG~G~m-----G~sla~~L~~~g~~V~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLI-----GGSLGLDLRSLGHTVYGVSR 31 (279)
T ss_pred CeEEEEeecHH-----HHHHHHHHHHCCCEEEEEEC
Confidence 57888754432 35788899999999999876
No 499
>PRK06194 hypothetical protein; Provisional
Probab=24.70 E-value=1.3e+02 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=22.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 011832 9 HILIFPLPCQSHMNSMLKLAEIFGLAGLKVTFLNS 43 (476)
Q Consensus 9 ~il~~~~~~~gH~~p~l~La~~L~~rGH~Vt~~~~ 43 (476)
|.++++ |+.|-+ -..+++.|+++|++|+++.-
T Consensus 7 k~vlVt-GasggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVIT-GAASGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEe-CCccHH--HHHHHHHHHHCCCEEEEEeC
Confidence 344455 344444 46789999999999988764
No 500
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=24.66 E-value=48 Score=29.74 Aligned_cols=112 Identities=19% Similarity=0.260 Sum_probs=48.7
Q ss_pred EeccccccCHHHHHHHHHHHHhcCCceEEEECCCCCCCch-hhH---HHHHHh---hcCCceEe--eccChHH---Hhhc
Q 011832 295 SFGSITLLKREQLIEFWHGLVDSKQRFLWVIRPDSVIGEG-DAL---AELVEG---TKERGLLV--SWVPQEE---VLAH 362 (476)
Q Consensus 295 s~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~-~~l---~~~~~~---~~~nv~~~--~~~pq~~---lL~~ 362 (476)
+.|-.+..+.+.+..++..+++.-..+=..++++-..++. .++ ..+... ...++.++ .|..-.+ .+..
T Consensus 79 tiG~~f~~d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~d 158 (248)
T PF07476_consen 79 TIGLAFDNDPDRMADYLAELEEAAAPFKLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFAD 158 (248)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHTTS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHH
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhcCCCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHh
Confidence 4444445566666666666665434444444544333322 222 233322 33455554 6654322 2221
Q ss_pred ccccccc-----cccCchhHHHHHhhCCceeccCCcccchhhHHHHHhhhcceeecccccCHHHHHHHH
Q 011832 363 QAVAGFL-----THSGWNSTLESIVAGVPMICWPYFADQQINSRFVSEVWNLGLDMKDVCDRNVVEKMV 426 (476)
Q Consensus 363 ~~~~~~I-----~HGG~~s~~eal~~GvP~l~iP~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~l~~~i 426 (476)
....-+| --||.+.+.||+.+ +++.|+|..+..+.+.......+
T Consensus 159 a~A~dmVQIKtPDLGgi~ntieAvly--------------------Ck~~gvgaY~GGtCNETd~SArv 207 (248)
T PF07476_consen 159 AKAADMVQIKTPDLGGINNTIEAVLY--------------------CKEHGVGAYLGGTCNETDRSARV 207 (248)
T ss_dssp TT-SSEEEE-GGGGSSTHHHHHHHHH--------------------HHHTT-EEEE---TTS-HHHHHH
T ss_pred cCCcCEEEecCCCccchhhHHHHHHH--------------------HHhcCCceeecccccccchhHHH
Confidence 1111111 23788888888655 36678888887666665554443
Done!