BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011833
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3T0A0|ABHD1_BOVIN Abhydrolase domain-containing protein 1 OS=Bos taurus GN=ABHD1 PE=2
SV=1
Length = 404
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 235 EDVPAVMEYIRTLSKPKDGKLLAVGHSMGGILLYAMLSHCGFEGKDSGFASVTTLASSLD 294
ED+ V+ +I+ S+ LLAVG S+GGIL +L+H G+ +G + TL++ D
Sbjct: 178 EDLVTVINHIK--SRYPQAPLLAVGISLGGIL---VLNHLARTGRAAGLVAALTLSACWD 232
>sp|P27431|YCFD_ECOLI 50S ribosomal protein L16 arginine hydroxylase OS=Escherichia coli
(strain K12) GN=ycfD PE=1 SV=2
Length = 373
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 369 IPTKLISQLTTVFQEGGLCDRSGTFFYKDHIGKTNVPVLALAADQDLICPTEAVYETVKL 428
+ ++L+S Q+G G F DH+G+TN +L A + PT A+ +
Sbjct: 49 VDSRLVSH-----QDGKWQVSHGPFESYDHLGETNWSLLVQAVNH-WHEPTAALMRPFRE 102
Query: 429 IPEH-----LVSFKVFGEPRGPHYAHYDL 452
+P+ ++SF V G GPH YD+
Sbjct: 103 LPDWRIDDLMISFSVPGGGVGPHLDQYDV 131
>sp|Q88FY3|NICD_PSEPK N-formylmaleamate deformylase OS=Pseudomonas putida (strain KT2440)
GN=nicD PE=1 SV=1
Length = 268
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 93 RNHPLLLLSGIGTNAIGYDLSPEYSFARYMSGQGFDTWILEVRGAGLSAH--RVEFGEDS 150
+ H L+L+ GI + AI + F G FDT++L+VRG GLS+ +++G D+
Sbjct: 25 KGHALILVPGITSPAI------TWGFVAERLGHYFDTYVLDVRGRGLSSSGPDLDYGTDA 78
>sp|O81973|C93A3_SOYBN Cytochrome P450 93A3 OS=Glycine max GN=CYP93A3 PE=2 SV=1
Length = 510
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 130 WILEVRGAGLSAHRVEFGEDSMITSAN--AKSTGGTTLSRESQSKSQLMETVMQSSQRLS 187
+I V G+S V+FG + + S N ++ T + E +++ + M +++ + LS
Sbjct: 155 FIKRVLQKGISGEAVDFGGEFITLSNNIVSRMIVSQTSTTEDENEVEEMRKLVKDAAELS 214
Query: 188 GLLNEGEDPDAPQFFDLQ---ERLSTSLEDFQKQLDLIVK 224
G N + + FDLQ +RL + F LD I+K
Sbjct: 215 GKFNISDFVSFLKRFDLQGFNKRLEKIRDCFDTVLDRIIK 254
>sp|Q6BVB2|ALG11_DEBHA GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=ALG11 PE=3 SV=2
Length = 616
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 352 MMHPELFEKLIFSNFGNIPTKLISQLTT-VFQEGGLCDRSGTFFYKDHIG 400
++ PE+F KL F I +S++ T VF G L SG F++ ++G
Sbjct: 254 IIQPEMFNKLKFQGLSQIRVPKLSEIKTDVFSIGKLIYWSGVFYFYKYLG 303
>sp|Q6N344|GCSP_RHOPA Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=gcvP PE=3
SV=1
Length = 990
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 21/102 (20%)
Query: 257 AVGHSMGGILLYAMLSHCGFEGKDSGFASVTTLASSL-------------DYRPSNSLLR 303
A+ + GG L YA + +D+G A T L ++L DYR LLR
Sbjct: 455 ALWRAFGGSLDYAAVE------RDAGDALGTALPAALKRTSDYLTQPAFQDYRSETELLR 508
Query: 304 LLLPLSDPIQALNVPVIPLGTFLAAIHPFASSPPYVLSWLKF 345
+ LSD AL+ +IPLG+ ++ P L+W +F
Sbjct: 509 YMRKLSDRDLALDRAMIPLGSCTMKLNATTEMMP--LTWPEF 548
>sp|P55526|Y4KF_RHISN Uncharacterized protein y4kF OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02900 PE=4 SV=1
Length = 434
Score = 33.5 bits (75), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 237 VPAVMEYIRTLSKPK---DGKLLAVGHSMGGILLYAMLSH 273
V AV++ R + D KL+ VGHS+GG++ Y +LS+
Sbjct: 246 VRAVLQAFRNADAARQEGDDKLIIVGHSLGGVITYDILSY 285
>sp|P76458|ATOD_ECOLI Acetate CoA-transferase subunit alpha OS=Escherichia coli (strain
K12) GN=atoD PE=1 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 387 CDRSGTFFYKDHIGKTNVPVLALAADQDLICPTEAVYETVKLIPEHLVS 435
CD G Y+ N P++ALAAD L+ P E V ET +L P+H+V+
Sbjct: 159 CDTLGNLTYQLSARNFN-PLIALAADITLVEPDELV-ETGELQPDHIVT 205
>sp|Q55921|PRXC_SYNY3 Putative non-heme chloroperoxidase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0314 PE=3 SV=1
Length = 276
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 395 YKDHIGKTNVPVLALAADQDLICPTEAVYETVKLIPEHLVSFKVFGEPRGPHYAHYDLVG 454
++D + + +VP L + D D I P E+ T +P+ + + ++ P GPH ++
Sbjct: 209 FRDDLPRIDVPTLIIHGDADRILPLES---TAARLPKRIKNSQLEIIPGGPHAINW---- 261
Query: 455 SRLAAYQVYPCIIEFL 470
A QV P ++ FL
Sbjct: 262 --THADQVNPLLLNFL 275
>sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens
GN=VPS13B PE=1 SV=2
Length = 4022
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 348 SAPDMMHPELFEKLIFSNFGNIPTKLISQLTTVFQEGGLCDRSGTFFYKDHIGKTNVPVL 407
S P ++ PE + + GN F+E G C R+ Y++H+G T + +
Sbjct: 3201 SLPAIVRPEFPRQSVAVPLGN------------FRENGFCTRAIVLTYQEHLGVTYLTLS 3248
Query: 408 ALAADQDLI---CPTEA-VYETVKLIPEHLVSFKVFGEPRGPHYAHYDLVGS 455
+ + +I CP + + E +K IP+ V K H+ Y + S
Sbjct: 3249 EDPSPRVIIHNRCPVKMLIKENIKDIPKFEVYCKKIPSECSIHHELYHQISS 3300
>sp|P80961|AFP4_MYOOC Type-4 ice-structuring protein LS-12 OS=Myoxocephalus
octodecimspinosis PE=1 SV=2
Length = 128
Score = 32.3 bits (72), Expect = 9.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 172 KSQLMETVMQSSQRLSGLLNEGEDPDAPQFFDLQERLSTSLEDFQKQLDLIVK 224
K+QL V Q +++ + E+ P ++Q L +++FQKQ++ I+K
Sbjct: 65 KTQLQPLVAQIQEQMKTVATNVEEQIRPLTANVQAHLQPQIDNFQKQMEAIIK 117
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,806,771
Number of Sequences: 539616
Number of extensions: 8504681
Number of successful extensions: 19673
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 19669
Number of HSP's gapped (non-prelim): 23
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)