BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011834
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGQ0|VOZ1_ARATH Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1
Length = 486
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/496 (70%), Positives = 395/496 (79%), Gaps = 32/496 (6%)
Query: 1 MVGKGAKTNCKSASHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLR 60
M GK +KTNC+SASHKLFKDKAK RVDDLQG LDLQFARKESR DV+LLEEQV+QMLR
Sbjct: 1 MTGKRSKTNCRSASHKLFKDKAKNRVDDLQGMLLDLQFARKESRPTDVTLLEEQVNQMLR 60
Query: 61 EWKAELHEPSPASSLQQDGSLG-FSSDIYRLLQLCEEEDDATSTLTAPKPEPNDQVLPVA 119
EWK+EL+EPSPASSLQQ G+LG FSSDI RLLQLC+EEDDATS L APKPEP DQ L
Sbjct: 61 EWKSELNEPSPASSLQQGGTLGSFSSDICRLLQLCDEEDDATSKLAAPKPEPADQNLEAG 120
Query: 120 DTAVYHE---------QHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHH-FDLHQEFE 169
AV+ +H PLVD CK+ S A NN +G+ L+YH +DL QEFE
Sbjct: 121 KAAVFQRGYNLVQGKSEHGLPLVDNCKDLSL----AAGNNFDGTAPLEYHQQYDLQQEFE 176
Query: 170 QNFYAGYN-VSNFCGEDAMQQISGYLPGICPPPSAFLGPKCALWDCPRPAQGVDWYQDYC 228
NF G+N ++ + IS ++P ICPPPSAFLGPKCALWDCPRPAQG DW+QDYC
Sbjct: 177 PNFNGGFNNCPSYGVVEGPIHISNFIPTICPPPSAFLGPKCALWDCPRPAQGFDWFQDYC 236
Query: 229 SGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPW 288
S FHAALAF+EGPPGM PV+RPGGIGLKDGLLFAALSA+A GKDVGIPECEGAATAKSPW
Sbjct: 237 SSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 296
Query: 289 NAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGG 348
NAPELFDL+VLE ET+REWLFFDKPRRAFESGNRKQRSLPDY+GRGWHESRKQ+M EFGG
Sbjct: 297 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGG 356
Query: 349 LKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADLQK 408
LKRSYYMDPQPL+HFEWHLYEYEINKCDACALYRLELKLVDGKK++KGK++NDSVADLQK
Sbjct: 357 LKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQK 416
Query: 409 QMGRLTAEFPSD---------NKRLVKGRAKVNAKAGVGGNIYPASNVVASTNEKFDYGP 459
QMGRLTAEFP + NKR +KGR KV+ K G NV + + DYG
Sbjct: 417 QMGRLTAEFPPENNTTNTTNNNKRCIKGRPKVSTKVATG-------NVQNTVEQANDYGV 469
Query: 460 TGQFDYLIENLSEYYL 475
+F+YL+ NLS+YY+
Sbjct: 470 GEEFNYLVGNLSDYYI 485
>sp|Q9SLB9|VOZ2_ARATH Transcription factor VOZ2 OS=Arabidopsis thaliana GN=VOZ2 PE=1 SV=2
Length = 450
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/427 (50%), Positives = 268/427 (62%), Gaps = 47/427 (11%)
Query: 25 RVDDLQGKFLDLQFARKESRTVDVSLLEEQVHQMLREWKAELHEPSPASSLQQDGSLGFS 84
++ +LQ +F LQ ARKE R D++LLE Q+ Q +REW+AEL PSP SSL +G F
Sbjct: 17 KLRELQERFCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSPESSLLGEGISQFL 76
Query: 85 SDIYRLLQLCEEEDDATSTL---TAPKPEPN----------------------------- 112
+ LL+L +EEDDATSTL KP+P
Sbjct: 77 EEFAPLLKL-DEEDDATSTLKEHAGAKPDPEGFSQSLCPPEWTSENFSQSPFNGNFSCGF 135
Query: 113 DQVLPVADTAVYHEQHSFPLVDQCKNSSSGVHSTAIN-NLEGSTLLDYHHFDLHQEFEQN 171
+ L +T + + D NS+ H ++ NL+ ++ DY ++ QE +
Sbjct: 136 EDALNSTETHGQQLHYGYEGFDPSINSAPDFHDQKLSSNLDITSQYDYIFSEVRQELDN- 194
Query: 172 FYAGYNVSNFCGEDAMQQISGYLPGICP-----PPSAFLGPKCALWDCPRPAQGVDWYQD 226
S D+ ++I + P PPSAFLGPKCALWDC RPAQG +WY D
Sbjct: 195 -------SPSTKLDSSEEIDNFAEFSTPSSVRVPPSAFLGPKCALWDCTRPAQGSEWYLD 247
Query: 227 YCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKS 286
YCS +H LA +E PG PVLRPGGI LKD LL AL A+ QGK+VGIP CEGA K
Sbjct: 248 YCSNYHGTLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGAVNTKC 307
Query: 287 PWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEF 346
PWNA ELF L ++EGETIREWLFFDKPRRA++SGNRKQRSLPDYSGRGWHESRKQ+M E
Sbjct: 308 PWNAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQ 367
Query: 347 GGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLANDSVADL 406
G KRSYYMDPQP FEWHL+EY+IN+ DACALYRLELK+ +GKKS KGK++ D +ADL
Sbjct: 368 EGQKRSYYMDPQPPGPFEWHLFEYQINESDACALYRLELKVGNGKKSPKGKISKDPLADL 427
Query: 407 QKQMGRL 413
QK+MG+
Sbjct: 428 QKKMGQF 434
>sp|O74362|ESF2_SCHPO Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=esf2 PE=1 SV=1
Length = 334
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 344 NEFGGLKRSYYMDP----QPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSAKGKLA 399
N+ GG K S+Y D + L F+WH +I +A RL++++ G+K K +
Sbjct: 198 NQIGGKKSSWYHDDIWNMKYLPKFKWHHLTEQIAAENAARESRLKVEIEQGRKQLKQYMR 257
Query: 400 NDSVADL-----QKQMGR----LTAEFPSDNKRL 424
N A + +K+ R ++ EFP + K L
Sbjct: 258 NVENAKMIEGIRKKRSERDTLNVSTEFPEETKDL 291
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l
PE=1 SV=1
Length = 1240
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 35 DLQFARKESRTVDVSLLEEQVHQMLREWKAELHEPSPASSLQQDGSLGFSSDIYRLLQLC 94
DL F R S ++ +LE+ + R KA+ S + + Q + G + +
Sbjct: 678 DLMFTRDLSVKEELDMLEDSQYIHQRVQKAQFLVESESQNTVQRQTTGIEETWLKAQEFP 737
Query: 95 EEEDDATSTLTAPKPEPNDQVL-PVADTAVYHEQHSFPLVDQCKNSSSGVHSTA--INNL 151
++ + P+P+P+ + P A+ + S + DQ S HS + +L
Sbjct: 738 SQQKKKGTEFNKPQPQPSRLLTKPTQVEAISSQMASITICDQSAESEPQEHSEVHDVTSL 797
Query: 152 EGSTLLDYHHFD 163
+GS HHF+
Sbjct: 798 QGS-----HHFN 804
>sp|Q5F499|OPA1_CHICK Dynamin-like 120 kDa protein, mitochondrial OS=Gallus gallus
GN=OPA1 PE=2 SV=1
Length = 977
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 335 WHES-----RKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVD 389
WH+ K +N +R +Y +++ H + E+ D +R++ L
Sbjct: 854 WHQIYRRYFLKTALNHCNLCRRGFY-------YYQRHFVDSELECNDIVLFWRIQRMLAI 906
Query: 390 GKKSAKGKLANDSVADLQKQMGRLTAEFPSDNKRLVK 426
+ + +L N V L+K + + +F DN++ VK
Sbjct: 907 TANTLRQQLTNTEVRRLEKNVKEVLEDFAEDNEKKVK 943
>sp|Q8CT28|PUR3_STAES Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=purN PE=3 SV=1
Length = 188
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 121 TAVYHEQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDL--HQEFEQNFYAGYNV 178
TA+Y + P +D+ KN + +H + +L + H L +E + AGY
Sbjct: 33 TALYTDNEGVPCIDRAKNLNIPIHINKPKDFSSKSLYEQHLLKLLSSEEVQWIVLAGY-- 90
Query: 179 SNFCGEDAMQQISGYLPGICP 199
G+D +Q G + I P
Sbjct: 91 MRLVGQDLLQAYEGRILNIHP 111
>sp|Q5HQ98|PUR3_STAEQ Phosphoribosylglycinamide formyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=purN PE=3
SV=1
Length = 188
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 121 TAVYHEQHSFPLVDQCKNSSSGVHSTAINNLEGSTLLDYHHFDL--HQEFEQNFYAGYNV 178
TA+Y + P +D+ KN + +H + +L + H L +E + AGY
Sbjct: 33 TALYTDNEGVPCIDRAKNLNIPIHINKPKDFSSKSLYEQHLLKLLSSEEVQWIVLAGY-- 90
Query: 179 SNFCGEDAMQQISGYLPGICP 199
G+D +Q G + I P
Sbjct: 91 MRLVGQDLLQAYEGRILNIHP 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,964,978
Number of Sequences: 539616
Number of extensions: 8833759
Number of successful extensions: 20927
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 20913
Number of HSP's gapped (non-prelim): 15
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)