Query 011834
Match_columns 476
No_of_seqs 30 out of 32
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 16:15:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 95.9 0.0019 6.5E-08 57.7 1.0 124 256-391 26-170 (171)
2 3ulx_A Stress-induced transcri 94.8 0.0057 1.9E-07 55.1 0.3 121 256-387 24-169 (174)
3 1ich_A TNF-1, tumor necrosis f 81.6 0.66 2.3E-05 39.7 2.2 15 51-65 53-67 (112)
4 3ezq_A Tumor necrosis factor r 80.3 0.77 2.6E-05 39.4 2.2 14 51-64 48-61 (115)
5 3oq9_A Tumor necrosis factor r 78.2 0.5 1.7E-05 38.4 0.4 15 51-65 40-54 (86)
6 1wyl_A NEDD9 interacting prote 71.3 4.3 0.00015 33.7 4.3 52 221-305 13-64 (116)
7 1bkr_A Spectrin beta chain; fi 67.6 5 0.00017 32.9 3.9 52 221-305 9-60 (109)
8 1wyq_A Spectrin beta chain, br 62.2 7.3 0.00025 32.9 4.0 49 221-302 13-61 (127)
9 2d87_A Smoothelin splice isofo 59.4 7.8 0.00027 32.8 3.7 51 221-304 13-63 (128)
10 2d88_A Protein mical-3; all al 58.2 4.2 0.00014 34.0 1.8 53 221-306 15-67 (121)
11 1bhd_A Utrophin; calponin homo 55.5 6.6 0.00023 32.7 2.6 52 221-305 14-65 (118)
12 2d89_A EHBP1 protein; all alph 54.6 5.8 0.0002 33.0 2.1 53 221-306 15-67 (119)
13 1fad_A Protein (FADD protein); 51.2 7.6 0.00026 30.6 2.2 16 51-66 53-68 (99)
14 1wxp_A THO complex subunit 1; 48.5 9.1 0.00031 31.2 2.3 15 51-65 56-70 (110)
15 2of5_A Death domain-containing 48.4 8.6 0.0003 32.2 2.2 15 51-65 63-77 (114)
16 2o71_A Death domain-containing 47.8 8.9 0.00031 32.1 2.2 15 51-65 63-77 (115)
17 2of5_H Leucine-rich repeat and 45.3 11 0.00037 31.2 2.3 15 51-65 52-66 (118)
18 2yqf_A Ankyrin-1; death domain 43.5 12 0.00041 30.4 2.3 15 51-65 57-71 (111)
19 3ezq_B Protein FADD; apoptosis 40.0 14 0.00047 31.3 2.2 16 51-66 45-60 (122)
20 2ets_A Hypothetical protein; s 37.8 51 0.0017 28.9 5.4 52 14-65 9-64 (128)
21 1c53_A Cytochrome C553; electr 37.7 36 0.0012 24.5 3.9 50 218-274 1-51 (79)
22 1xrd_A LH-1, light-harvesting 31.6 12 0.00043 28.7 0.5 12 305-317 3-14 (52)
23 1wku_A Alpha-actinin 3; calpon 30.9 46 0.0016 30.5 4.3 49 221-302 146-194 (254)
24 1c75_A Cytochrome C-553; heme, 30.4 43 0.0015 23.6 3.2 42 219-264 2-43 (71)
25 3h0g_K DNA-directed RNA polyme 30.1 15 0.00053 31.6 0.9 15 289-303 2-16 (123)
26 3v1a_A Computational design, M 29.1 45 0.0015 25.2 3.2 29 35-63 16-44 (48)
27 3zwl_E Eukaryotic translation 28.3 25 0.00086 26.5 1.7 22 42-64 5-26 (50)
28 2hfi_A Hypothetical protein YP 28.0 63 0.0022 28.2 4.4 50 16-65 4-57 (131)
29 2huj_A LIN2004 protein; hypoth 25.2 1.2E+02 0.004 26.9 5.7 49 17-65 21-73 (140)
30 2gf5_A FADD protein; death dom 22.8 31 0.0011 30.4 1.5 15 51-65 137-151 (191)
31 4djb_A E4-ORF3; adenovirus pro 20.5 50 0.0017 29.3 2.3 16 51-66 38-53 (130)
32 1wve_C 4-cresol dehydrogenase 20.3 85 0.0029 22.8 3.3 40 217-264 4-43 (80)
33 2d9e_A Peregrin; four-helix bu 20.2 75 0.0026 26.1 3.3 47 25-71 68-116 (121)
34 1cno_A Cytochrome C552; electr 20.1 95 0.0033 22.5 3.5 48 218-272 5-52 (87)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=95.90 E-value=0.0019 Score=57.73 Aligned_cols=124 Identities=28% Similarity=0.565 Sum_probs=77.2
Q ss_pred CchhhHH-HHHhhhcCCccC---CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCC
Q 011834 256 KDGLLFA-ALSARAQGKDVG---IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYS 331 (476)
Q Consensus 256 KDg~LFa-AL~AK~qGK~VG---IP~CEGAAtaKSPWNApELFDlsvleGEtiREWLFFDKPRRAFeSGnRKQRSLPDY~ 331 (476)
.|-=|.. -|..|+.|...- |+++. .-...||+=|+.. . -|+ +||+||=.-.|.+-.|.|..|.-
T Consensus 26 TDeELv~~YL~~K~~g~~~~~~~I~e~D--iy~~~Pw~Lp~~~---~-~g~--~ewyFFs~r~~k~~~g~R~~R~t---- 93 (171)
T 1ut7_A 26 TDEELMVQYLCRKAAGYDFSLQLIAEID--LYKFDPWVLPNKA---L-FGE--KEWYFFSPRDRKYPNGSRPNRVA---- 93 (171)
T ss_dssp CHHHHHHHTHHHHHTTCCCSSCCSEECC--GGGSCGGGHHHHS---S-SCS--SEEEEEEECCC-------CCEEE----
T ss_pred ChHHHHHHHHHHHhcCCCCCCCeEeecc--cccCChhHhhchh---h-cCC--ccEEEEeccccccCCCCcccccC----
Confidence 4555665 489999998765 45543 4567899877753 2 244 79999998888999999999974
Q ss_pred CCc-hhhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeeEEeeccc---------ccceeeeeeeeeccCc
Q 011834 332 GRG-WHESRK--QVMN--EFGGLKRS--YYMDPQPLN-HFEWHLYEYEINKC---------DACALYRLELKLVDGK 391 (476)
Q Consensus 332 GRG-WHESRK--QVMk--efGGlKRS--YYMDPQP~~-~~EWHLyEYEIn~c---------dacALYRLElK~vD~K 391 (476)
|.| ||-.-+ .|+. ..-|.||+ ||..-.|.+ .-.|=|.||.|... +...|+|+-.|....+
T Consensus 94 ~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~~ 170 (171)
T 1ut7_A 94 GSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170 (171)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC----
T ss_pred CCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCCC
Confidence 333 775432 2221 23466774 787655544 57899999999754 5788999887765443
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=94.79 E-value=0.0057 Score=55.09 Aligned_cols=121 Identities=29% Similarity=0.546 Sum_probs=74.9
Q ss_pred CchhhHH-HHHhhhcCCccC---CcccccccccCCCCCcccccccccccchhhhhhhcccccchhhcccCccccCCCCCC
Q 011834 256 KDGLLFA-ALSARAQGKDVG---IPECEGAATAKSPWNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYS 331 (476)
Q Consensus 256 KDg~LFa-AL~AK~qGK~VG---IP~CEGAAtaKSPWNApELFDlsvleGEtiREWLFFDKPRRAFeSGnRKQRSLPDY~ 331 (476)
.|-=|.. -|.-|+.|...- |+++. .-...||+=|+.. . .|+ +||+||=.-.|.+..|.|..|.--
T Consensus 24 TDeELV~~YL~~K~~g~~~~~~~I~evD--vy~~~Pw~Lp~~~---~-~g~--~ewYFFs~r~~ky~~g~R~nR~t~--- 92 (174)
T 3ulx_A 24 TDDELVEHYLCRKAAGQRLPVPIIAEVD--LYKFDPWDLPERA---L-FGA--REWYFFTPRDRKYPNGSRPNRAAG--- 92 (174)
T ss_dssp CHHHHHHHTHHHHHHTCCCSSSCCEECC--GGGSCGGGSGGGC---S-SCS--SEEEEEEECCC-----CCSCEEET---
T ss_pred CHHHHHHHHHHHHhcCCCCCcCeeeecc--cccCCchhhhhhh---c-cCC--ceEEEEeccccccCCCCCceeecC---
Confidence 4555554 578888887542 55554 3457899877753 2 354 799999877788999999988731
Q ss_pred CCchhhhHH--HHHH--HhcCcccc--cccCCCCCC-CcceeeeEEeeccc--------------ccceeeeeeeee
Q 011834 332 GRGWHESRK--QVMN--EFGGLKRS--YYMDPQPLN-HFEWHLYEYEINKC--------------DACALYRLELKL 387 (476)
Q Consensus 332 GRGWHESRK--QVMk--efGGlKRS--YYMDPQP~~-~~EWHLyEYEIn~c--------------dacALYRLElK~ 387 (476)
+==||-.-+ .|.. ..-|.||+ ||..-.|.+ .-.|=|.||.|.+. |...|+|+=.|.
T Consensus 93 ~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 93 NGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp TEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred CceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 223665422 3331 23467774 787766643 46799999999763 456777776553
No 3
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=81.60 E-value=0.66 Score=39.71 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhh
Q 011834 51 LEEQVHQMLREWKAE 65 (476)
Q Consensus 51 lEeQvhQmLREWkaE 65 (476)
++||++||||.|+--
T Consensus 53 l~Eq~yqmLr~W~~~ 67 (112)
T 1ich_A 53 LREAQYSMLATWRRR 67 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 899999999999864
No 4
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=80.35 E-value=0.77 Score=39.39 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHh
Q 011834 51 LEEQVHQMLREWKA 64 (476)
Q Consensus 51 lEeQvhQmLREWka 64 (476)
++||++||||.|+-
T Consensus 48 ~~Eq~~qlLr~W~~ 61 (115)
T 3ezq_A 48 TAEQKVQLLRNWHQ 61 (115)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 56999999999984
No 5
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=78.22 E-value=0.5 Score=38.43 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhh
Q 011834 51 LEEQVHQMLREWKAE 65 (476)
Q Consensus 51 lEeQvhQmLREWkaE 65 (476)
++||++||||.|+--
T Consensus 40 ~~Eq~~qmL~~W~~~ 54 (86)
T 3oq9_A 40 TAEQKVQLLLCWYQS 54 (86)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 349999999999863
No 6
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=71.27 E-value=4.3 Score=33.66 Aligned_cols=52 Identities=33% Similarity=0.539 Sum_probs=37.4
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011834 221 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 300 (476)
Q Consensus 221 ~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VGIP~CEGAAtaKSPWNApELFDlsvle 300 (476)
+.|||.-|..| +|. +| +--.-+.+||..|.||.-+. +|+|+|.+-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~v-~nFs~sw~dG~af~aLih~~---------------------~P~lid~~~l~ 59 (116)
T 1wyl_A 13 LRWCQEQTAGY----------PGV-HV-SDLSSSWADGLALCALVYRL---------------------QPGLLEPSELQ 59 (116)
T ss_dssp HHHHHHHHHHS----------TTC-CC-SCTTTTTTSSHHHHHHHHHH---------------------CTTSCCCSSGG
T ss_pred HHHHHHHhccC----------CCC-CC-CCccccccccHHHHHHHHHH---------------------CcCCCCHHHhc
Confidence 67999877644 443 33 33345899999999999887 68888887776
Q ss_pred chhhh
Q 011834 301 GETIR 305 (476)
Q Consensus 301 GEtiR 305 (476)
.++.+
T Consensus 60 ~~~~~ 64 (116)
T 1wyl_A 60 GLGAL 64 (116)
T ss_dssp GCCHH
T ss_pred cCCHH
Confidence 65443
No 7
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=67.56 E-value=5 Score=32.93 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=37.0
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011834 221 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 300 (476)
Q Consensus 221 ~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VGIP~CEGAAtaKSPWNApELFDlsvle 300 (476)
+.|||.-|.. -||. +| .--.-+.+||..|.||.-+. +|+|+|.+-|.
T Consensus 9 L~W~q~~~~~----------y~~v-~v-~nFs~sw~dG~af~aLih~~---------------------~P~lid~~~l~ 55 (109)
T 1bkr_A 9 LLWCQMKTAG----------YPNV-NI-HNFTTSWRDGMAFNALIHKH---------------------RPDLIDFDKLK 55 (109)
T ss_dssp HHHHHHHTTT----------CTTC-CC-SSSSGGGTTSHHHHHHHHHH---------------------CGGGCCGGGCC
T ss_pred HHHHHHHHcc----------CCCC-CC-CCCcccccccHHHHHHHHHH---------------------CcCCCCHHHcC
Confidence 5799876543 3444 23 44456889999999999887 68899988876
Q ss_pred chhhh
Q 011834 301 GETIR 305 (476)
Q Consensus 301 GEtiR 305 (476)
.+..+
T Consensus 56 ~~~~~ 60 (109)
T 1bkr_A 56 KSNAH 60 (109)
T ss_dssp TTCHH
T ss_pred cCCHH
Confidence 65443
No 8
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=62.24 E-value=7.3 Score=32.88 Aligned_cols=49 Identities=29% Similarity=0.528 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011834 221 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 300 (476)
Q Consensus 221 ~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VGIP~CEGAAtaKSPWNApELFDlsvle 300 (476)
+.|||.-|..| ||. +| .--.-+.+||..|.||.-+. .|+|+|++-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~V-~nFs~sw~DG~Af~aLih~~---------------------~P~lid~~~l~ 59 (127)
T 1wyq_A 13 LLWCQMKTAGY----------PNV-NV-HNFTTSWRDGLAFNAIVHKH---------------------RPDLLDFESLK 59 (127)
T ss_dssp HHHHHHHHHTS----------SSC-CC-SCSSTTSSSSHHHHHHHHHH---------------------CTTTCCTTTSC
T ss_pred HHHHHHHHhcC----------CCC-CC-CCCcccccccHHHHHHHHHH---------------------CcCcCCHHHhC
Confidence 67999766543 443 23 44446899999999999987 58888887775
Q ss_pred ch
Q 011834 301 GE 302 (476)
Q Consensus 301 GE 302 (476)
.+
T Consensus 60 ~~ 61 (127)
T 1wyq_A 60 KC 61 (127)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 9
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=59.39 E-value=7.8 Score=32.80 Aligned_cols=51 Identities=25% Similarity=0.458 Sum_probs=36.1
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011834 221 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 300 (476)
Q Consensus 221 ~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VGIP~CEGAAtaKSPWNApELFDlsvle 300 (476)
+.|||.-|..| +|. +| +--.-+.+||..|.||.-+. +|+|+|..-|.
T Consensus 13 L~W~q~~~~~y----------~~v-~V-~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 59 (128)
T 2d87_A 13 LDWCRAKTRGY----------EHV-DI-QNFSSSWSDGMAFCALVHNF---------------------FPEAFDYGQLS 59 (128)
T ss_dssp HHHHHHHSSSC----------TTC-CC-SCTTTTTTSSHHHHHHHHHH---------------------CTTTSCSTTSC
T ss_pred HHHHHHHhccC----------CCC-CC-CCccccccccHHHHHHHHHH---------------------CcCcCCHHHcC
Confidence 57999877654 232 23 33345899999999999887 68888887776
Q ss_pred chhh
Q 011834 301 GETI 304 (476)
Q Consensus 301 GEti 304 (476)
.+..
T Consensus 60 ~~~~ 63 (128)
T 2d87_A 60 PQNR 63 (128)
T ss_dssp SSCH
T ss_pred ccCH
Confidence 5443
No 10
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=58.21 E-value=4.2 Score=34.00 Aligned_cols=53 Identities=25% Similarity=0.560 Sum_probs=37.7
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011834 221 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 300 (476)
Q Consensus 221 ~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VGIP~CEGAAtaKSPWNApELFDlsvle 300 (476)
+.|||.-|..| +|.. ++--.-+.+||..|.||.-+. +|+|+|..-|.
T Consensus 15 L~W~q~~~~~y----------~~v~--v~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 61 (121)
T 2d88_A 15 LGWCQRQTDGY----------AGVN--VTDLTMSWKSGLALCAIIHRY---------------------RPDLIDFDSLD 61 (121)
T ss_dssp HHHHHHHSTTS----------SSCC--CCCSSHHHHTSHHHHHHHHHH---------------------CTTTSCTTTSC
T ss_pred HHHHHHHhccC----------CCCC--CCCchhhccccHHHHHHHHHh---------------------CcCcCCHHHcC
Confidence 67999877543 3332 333334789999999999987 68888888877
Q ss_pred chhhhh
Q 011834 301 GETIRE 306 (476)
Q Consensus 301 GEtiRE 306 (476)
.++.+|
T Consensus 62 ~~~~~~ 67 (121)
T 2d88_A 62 EQNVEK 67 (121)
T ss_dssp TTCHHH
T ss_pred ccCHHH
Confidence 655443
No 11
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=55.48 E-value=6.6 Score=32.67 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=37.3
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011834 221 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 300 (476)
Q Consensus 221 ~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VGIP~CEGAAtaKSPWNApELFDlsvle 300 (476)
+.|||.-|..| +|. + ++--.-+.+||..|.||.-+. +|+|+|.+-|.
T Consensus 14 L~W~q~~~~~y----------~~v-~-v~nFs~sw~DG~af~aLih~~---------------------~P~lid~~~l~ 60 (118)
T 1bhd_A 14 LSWVRQTTRPY----------SQV-N-VLNFTTSWTDGLAFNAVLHRH---------------------KPDLFSWDKVV 60 (118)
T ss_dssp HHHHHHHHTTS----------TTC-C-CCSSSGGGTTSHHHHHHHHHH---------------------CGGGSCHHHHH
T ss_pred HHHHHHHhccC----------CCC-C-CCCCcccccCcHHHHHHHHHH---------------------CcCcCCHHHhC
Confidence 57999877544 443 2 344456789999999999887 68888887776
Q ss_pred chhhh
Q 011834 301 GETIR 305 (476)
Q Consensus 301 GEtiR 305 (476)
.++.+
T Consensus 61 ~~~~~ 65 (118)
T 1bhd_A 61 KMSPI 65 (118)
T ss_dssp HSCHH
T ss_pred cCCHH
Confidence 55443
No 12
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.64 E-value=5.8 Score=33.00 Aligned_cols=53 Identities=23% Similarity=0.498 Sum_probs=37.1
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011834 221 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 300 (476)
Q Consensus 221 ~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VGIP~CEGAAtaKSPWNApELFDlsvle 300 (476)
+.|||.-|..| +|. .|--.. -+.+||..|.||.-+. .|+++|..-|.
T Consensus 15 L~W~~~~~~~y----------~~v-~v~nFs-~sw~dG~af~aLi~~~---------------------~P~lid~~~l~ 61 (119)
T 2d89_A 15 LVWCKEVTKNY----------RGV-KITNFT-TSWRNGLSFCAILHHF---------------------RPDLIDYKSLN 61 (119)
T ss_dssp HHHHHHHTTTC----------SSC-CCCCSS-HHHHTTHHHHHHHHHH---------------------CTTTSCGGGCC
T ss_pred HHHHHHHhccC----------CCC-CCCCcc-ccccccHHHHHHHHHH---------------------CcCcCChhhhc
Confidence 67999876543 333 233333 3789999999999887 68889888877
Q ss_pred chhhhh
Q 011834 301 GETIRE 306 (476)
Q Consensus 301 GEtiRE 306 (476)
.+..+|
T Consensus 62 ~~~~~~ 67 (119)
T 2d89_A 62 PQDIKE 67 (119)
T ss_dssp TTCSHH
T ss_pred ccCHHH
Confidence 655443
No 13
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=51.19 E-value=7.6 Score=30.55 Aligned_cols=16 Identities=38% Similarity=0.682 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 011834 51 LEEQVHQMLREWKAEL 66 (476)
Q Consensus 51 lEeQvhQmLREWkaEL 66 (476)
+.||++|||+.|+..-
T Consensus 53 ~~eq~~~mL~~W~~~~ 68 (99)
T 1fad_A 53 LSERVRESLKVWKNAE 68 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6799999999998753
No 14
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=48.54 E-value=9.1 Score=31.17 Aligned_cols=15 Identities=20% Similarity=0.641 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhh
Q 011834 51 LEEQVHQMLREWKAE 65 (476)
Q Consensus 51 lEeQvhQmLREWkaE 65 (476)
+.||++|||+.|+..
T Consensus 56 ~~eq~~~mL~~W~~r 70 (110)
T 1wxp_A 56 MKMRAKQLLVAWQDQ 70 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 458999999999865
No 15
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=48.37 E-value=8.6 Score=32.16 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 011834 51 LEEQVHQMLREWKAE 65 (476)
Q Consensus 51 lEeQvhQmLREWkaE 65 (476)
+.||++|||+.|+..
T Consensus 63 l~eq~~qmL~~W~~r 77 (114)
T 2of5_A 63 VQSQVVEAFIRWRQR 77 (114)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 569999999999875
No 16
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=47.78 E-value=8.9 Score=32.11 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 011834 51 LEEQVHQMLREWKAE 65 (476)
Q Consensus 51 lEeQvhQmLREWkaE 65 (476)
+.||++|||+.|+..
T Consensus 63 l~eq~~qmL~~W~~r 77 (115)
T 2o71_A 63 VQSQVVEAFIRWRQR 77 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 569999999999875
No 17
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=45.30 E-value=11 Score=31.23 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhh
Q 011834 51 LEEQVHQMLREWKAE 65 (476)
Q Consensus 51 lEeQvhQmLREWkaE 65 (476)
+.||++|||+.|+..
T Consensus 52 l~eq~~~mL~~W~~~ 66 (118)
T 2of5_H 52 LDEQIRHMLFSWAER 66 (118)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999876
No 18
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=43.46 E-value=12 Score=30.38 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhh
Q 011834 51 LEEQVHQMLREWKAE 65 (476)
Q Consensus 51 lEeQvhQmLREWkaE 65 (476)
+.||++|||+.|+..
T Consensus 57 ~~eq~~~mL~~W~~~ 71 (111)
T 2yqf_A 57 LLEQSVALLNLWVIR 71 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 568999999999876
No 19
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=40.00 E-value=14 Score=31.32 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 011834 51 LEEQVHQMLREWKAEL 66 (476)
Q Consensus 51 lEeQvhQmLREWkaEL 66 (476)
+.||++|||+.|+..-
T Consensus 45 l~eq~~~mL~~W~~r~ 60 (122)
T 3ezq_B 45 LTERVRESLRIWKNTE 60 (122)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6799999999999653
No 20
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=37.77 E-value=51 Score=28.90 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=45.4
Q ss_pred chHHHHHHhhhhhhhhHHhhhhhHHHhhhccccc----hHHHHHHHHHHHHHHHhh
Q 011834 14 SHKLFKDKAKTRVDDLQGKFLDLQFARKESRTVD----VSLLEEQVHQMLREWKAE 65 (476)
Q Consensus 14 sh~~f~d~ak~rvddLQ~~F~~LQ~ARKEsR~~D----~avlEeQvhQmLREWkaE 65 (476)
-|+-+-|..+.-++++++|-..-|.+|.+++.-| |-=.=++|.+.|.+|+..
T Consensus 9 ~~~~~~~~i~~L~~~~~~~~~ry~~~ke~~~e~DFy~eVKPf~d~vd~~l~eW~~~ 64 (128)
T 2ets_A 9 HHHHMNDLVESLIYEVNNMQQNFENVKSQQQDHDFYQTVKPYTEHIDSILNEIKLH 64 (128)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTTHHHHHHHHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 3677889999999999999999999998888865 566779999999999974
No 21
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=37.67 E-value=36 Score=24.53 Aligned_cols=50 Identities=34% Similarity=0.579 Sum_probs=31.6
Q ss_pred CCchhhhhhhhhhhhhhhhccCCCC-CCCccccCCCCCCCchhhHHHHHhhhcCCccC
Q 011834 218 AQGVDWYQDYCSGFHAALAFSEGPP-GMGPVLRPGGIGLKDGLLFAALSARAQGKDVG 274 (476)
Q Consensus 218 aqG~e~~qdYCSs~Ha~LAlnEGpp-G~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VG 274 (476)
++|-.-++. |.++|..=. +|.+ +..|-|+ +....-+...|.+-..|..-|
T Consensus 1 a~G~~ly~~-Ca~CHg~~g--~g~~~~~~P~L~----g~~~~~~~~~l~~~~~g~~~~ 51 (79)
T 1c53_A 1 ADGAALYKS-CVGCHGADG--SKQAMGVGHAVK----GQKADELFKKLKGYADGSYGG 51 (79)
T ss_pred CcHHHHHHH-HHhccCCCC--CCCCCCCCCcCC----CCCHHHHHHHHHHHHcCCCCC
Confidence 456677777 999997432 4544 5567665 245566777777666665433
No 22
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=31.55 E-value=12 Score=28.74 Aligned_cols=12 Identities=58% Similarity=1.290 Sum_probs=9.3
Q ss_pred hhhhcccccchhh
Q 011834 305 REWLFFDKPRRAF 317 (476)
Q Consensus 305 REWLFFDKPRRAF 317 (476)
|=||.|| |||++
T Consensus 3 kIWl~fD-Prr~L 14 (52)
T 1xrd_A 3 RIWQLFD-PRQAL 14 (52)
T ss_dssp GGGGTSS-HHHHH
T ss_pred eEEEEEc-hhHHH
Confidence 5699998 88864
No 23
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=30.87 E-value=46 Score=30.47 Aligned_cols=49 Identities=29% Similarity=0.384 Sum_probs=33.1
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCccCCcccccccccCCCCCccccccccccc
Q 011834 221 VDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKDVGIPECEGAATAKSPWNAPELFDLSVLE 300 (476)
Q Consensus 221 ~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~VGIP~CEGAAtaKSPWNApELFDlsvle 300 (476)
+.||+.-|. |-+|. +|--.. =+++||..|.||.-+. .|+++|.+.+.
T Consensus 146 L~W~~~~~~----------~y~~v-~v~nFs-~s~~DG~a~~aLi~~~---------------------~P~~id~~~l~ 192 (254)
T 1wku_A 146 LLWCQRKTA----------PYRNV-NVQNFH-TSWKDGLALCALIHRH---------------------RPDLIDYAKLR 192 (254)
T ss_dssp HHHHHHHHT----------TCTTC-CCCSSS-GGGTTSHHHHHHHHHH---------------------CTTSCCGGGCC
T ss_pred HHHHHHHcc----------CCCCC-cCCCCc-cchhhHHHHHHHHHHH---------------------CCCcccccccC
Confidence 679987663 33443 343333 3799999999999887 56777776665
Q ss_pred ch
Q 011834 301 GE 302 (476)
Q Consensus 301 GE 302 (476)
.+
T Consensus 193 ~~ 194 (254)
T 1wku_A 193 KD 194 (254)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 24
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=30.42 E-value=43 Score=23.60 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=24.2
Q ss_pred CchhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHH
Q 011834 219 QGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAAL 264 (476)
Q Consensus 219 qG~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL 264 (476)
+|-.-++.+|.++|..=. +|. ..|-|+--+....+.-|+..+
T Consensus 2 ~G~~l~~~~C~~CHg~~g--~g~--~gP~L~~~~~~~~~~~l~~~i 43 (71)
T 1c75_A 2 DAEAVVQQKCISCHGGDL--TGA--SAPAIDKAGANYSEEEILDII 43 (71)
T ss_dssp CHHHHHHHHTHHHHCTTS--SCS--SSCCCTTGGGTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCC--CCC--CCCCCccccccCCHHHHHHHH
Confidence 566667889999997521 332 236665333334444555554
No 25
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.12 E-value=15 Score=31.56 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=13.8
Q ss_pred Ccccccccccccchh
Q 011834 289 NAPELFDLSVLEGET 303 (476)
Q Consensus 289 NApELFDlsvleGEt 303 (476)
|||+-|++-||+||-
T Consensus 2 nap~~~e~f~l~ge~ 16 (123)
T 3h0g_K 2 NQPERYELIELMGLP 16 (123)
T ss_dssp CCCCGGGTSSCSSCC
T ss_pred CCCCccceeEeCCCc
Confidence 999999999999874
No 26
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=29.10 E-value=45 Score=25.19 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.7
Q ss_pred hhHHHhhhccccchHHHHHHHHHHHHHHH
Q 011834 35 DLQFARKESRTVDVSLLEEQVHQMLREWK 63 (476)
Q Consensus 35 ~LQ~ARKEsR~~D~avlEeQvhQmLREWk 63 (476)
-|..||+.+|--+|..|++-++++=+|..
T Consensus 16 ~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 16 FIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999987776666543
No 27
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=28.31 E-value=25 Score=26.55 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=12.4
Q ss_pred hccccchHHHHHHHHHHHHHHHh
Q 011834 42 ESRTVDVSLLEEQVHQMLREWKA 64 (476)
Q Consensus 42 EsR~~D~avlEeQvhQmLREWka 64 (476)
|.-+++.+|+|.+ ..||.||+|
T Consensus 5 e~dsA~~evIe~R-RrlLeEW~a 26 (50)
T 3zwl_E 5 EADTAMRDLILHQ-RELLKQWTE 26 (50)
T ss_dssp ------CCHHHHH-HHHHHHHHH
T ss_pred HHhHhhHHHHHHH-HHHHHHHHH
Confidence 4446777788776 578999876
No 28
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=28.02 E-value=63 Score=28.17 Aligned_cols=50 Identities=8% Similarity=0.156 Sum_probs=42.9
Q ss_pred HHHHHHhhhhhhhhHHhhhhhHHHhhhccccc----hHHHHHHHHHHHHHHHhh
Q 011834 16 KLFKDKAKTRVDDLQGKFLDLQFARKESRTVD----VSLLEEQVHQMLREWKAE 65 (476)
Q Consensus 16 ~~f~d~ak~rvddLQ~~F~~LQ~ARKEsR~~D----~avlEeQvhQmLREWkaE 65 (476)
+.+++.-...++++.++-...|.+|++++..| |-=.=++|.+.|.+|+..
T Consensus 4 ~~L~~lteqLi~~~~e~~~~y~~~ke~~~e~DF~~eVKPf~d~vd~~l~~w~~~ 57 (131)
T 2hfi_A 4 QTLLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAARWAEG 57 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 34778888889999999999999999999876 566779999999999954
No 29
>2huj_A LIN2004 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.74A {Listeria innocua} SCOP: a.24.26.1
Probab=25.24 E-value=1.2e+02 Score=26.86 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=41.9
Q ss_pred HHHHHhhhhhhhhHHhhhhhHHHhhhccccc----hHHHHHHHHHHHHHHHhh
Q 011834 17 LFKDKAKTRVDDLQGKFLDLQFARKESRTVD----VSLLEEQVHQMLREWKAE 65 (476)
Q Consensus 17 ~f~d~ak~rvddLQ~~F~~LQ~ARKEsR~~D----~avlEeQvhQmLREWkaE 65 (476)
.+++.-...++++.+|-...|.+|.|++.-| |-=.=++|.+.|.+|+..
T Consensus 21 ~L~~lteqLi~~~~e~~~ry~~~ke~~~e~DFy~eVKPf~d~vd~~l~eW~~~ 73 (140)
T 2huj_A 21 ELLIRTEQLLLQNEKNWELYLSNREEEKPFDFYKDMKPFVDEAKRCADDFLEL 73 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHH
Confidence 4677788888999999999999999899876 566779999999999954
No 30
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=22.78 E-value=31 Score=30.40 Aligned_cols=15 Identities=47% Similarity=0.807 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhh
Q 011834 51 LEEQVHQMLREWKAE 65 (476)
Q Consensus 51 lEeQvhQmLREWkaE 65 (476)
+.||++|||+.|+..
T Consensus 137 ~~eq~~~mL~~W~~r 151 (191)
T 2gf5_A 137 LTERVRESLRIWKNT 151 (191)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 568999999999864
No 31
>4djb_A E4-ORF3; adenovirus protein, RRM-like fold, HPV E2 DBD-like protein, suppressor inactivation, nucleus, viral protein; 2.05A {Human adenovirus 5}
Probab=20.50 E-value=50 Score=29.32 Aligned_cols=16 Identities=25% Similarity=0.758 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhc
Q 011834 51 LEEQVHQMLREWKAEL 66 (476)
Q Consensus 51 lEeQvhQmLREWkaEL 66 (476)
|.+++-+.+|+||+|=
T Consensus 38 L~~~~~~Ii~~Wk~EN 53 (130)
T 4djb_A 38 IRDLLRDILRRWRDEN 53 (130)
T ss_dssp HHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5678999999999983
No 32
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=20.28 E-value=85 Score=22.78 Aligned_cols=40 Identities=30% Similarity=0.600 Sum_probs=27.7
Q ss_pred CCCchhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHH
Q 011834 217 PAQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAAL 264 (476)
Q Consensus 217 PaqG~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL 264 (476)
.+.|-+-++.+|.++|.. + .|+.|-|+ |-.+.+.-|+..+
T Consensus 4 ~~~G~~l~~~~C~~CHg~---~---gg~~P~L~--~~~~~~~~l~~~i 43 (80)
T 1wve_C 4 WGSGKNLYDKVCGHCHKP---E---VGVGPVLE--GRGLPEAYIKDIV 43 (80)
T ss_dssp SSSHHHHHHHTTHHHHST---T---TCSSCCCT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---C---CCCCCCCC--CCCCCHHHHHHHH
Confidence 467888888999999974 1 25677776 3334566677766
No 33
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.18 E-value=75 Score=26.10 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=34.8
Q ss_pred hhhhhHHhhhhhHHHhhhc--cccchHHHHHHHHHHHHHHHhhcCCCCC
Q 011834 25 RVDDLQGKFLDLQFARKES--RTVDVSLLEEQVHQMLREWKAELHEPSP 71 (476)
Q Consensus 25 rvddLQ~~F~~LQ~ARKEs--R~~D~avlEeQvhQmLREWkaEL~~pSP 71 (476)
=++|++-||.|-..=-.++ -..++..|++...++|++++.++..+..
T Consensus 68 f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~~~~ 116 (121)
T 2d9e_A 68 FEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGS 116 (121)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTSB
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3578888998865543332 2357889999999999999999875544
No 34
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=20.13 E-value=95 Score=22.54 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCchhhhhhhhhhhhhhhhccCCCCCCCccccCCCCCCCchhhHHHHHhhhcCCc
Q 011834 218 AQGVDWYQDYCSGFHAALAFSEGPPGMGPVLRPGGIGLKDGLLFAALSARAQGKD 272 (476)
Q Consensus 218 aqG~e~~qdYCSs~Ha~LAlnEGppG~~PVlRPgGI~LKDg~LFaAL~AK~qGK~ 272 (476)
++|-.-++ +|.++|..-. +|..+..|-|. | .....+.+.|..-..|..
T Consensus 5 ~~G~~ly~-~C~~CHg~~g--~g~~~~~P~L~--~--~~~~~~~~~l~~~~~g~~ 52 (87)
T 1cno_A 5 EAGKAKAA-VCAACHGQNG--ISQVPIYPNLA--G--QKEQYLVAALKAYKAGQR 52 (87)
T ss_dssp HHHHHHGG-GTHHHHCTTS--CCSSTTSCCCT--T--CCHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHH-HHHhhcCCCC--CCCCCCCCCCC--C--CCHHHHHHHHHHHHcCCc
Confidence 45767778 9999997532 44444566664 2 233445566666566653
Done!