BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011835
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLI 136
DL+VIG GP G A +A+LG+ VG++
Sbjct: 3 DLLVIGAGPGGYVAAIRAAQLGMKVGVV 30
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 108 LDLVVIGCGPAGLALAAESAKLGLNVGLI 136
D++VIG GP G A +SA+LGL LI
Sbjct: 4 FDVIVIGAGPGGYVAAIKSAQLGLKTALI 32
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 88 MDKQSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140
M +SK+ ++ + +G+ +L IG G G+ AA A L NV +
Sbjct: 1 MASKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR 60
Query: 141 PFTNNYGVWEDEFRDLGLEGCIEH 164
PF N + +R+L L C+ H
Sbjct: 61 PFQNQTHA-KRAYRELVLMKCVNH 83
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 88 MDKQSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140
M +SK+ ++ + +G+ +L IG G G+ AA A L NV +
Sbjct: 1 MGSKSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR 60
Query: 141 PFTNNYGVWEDEFRDLGLEGCIEH 164
PF N + +R+L L C+ H
Sbjct: 61 PFQNQTHA-KRAYRELVLMKCVNH 83
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 113 IGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEH 164
IG G G+ AA LG+NV + PF N + +R+L L C+ H
Sbjct: 32 IGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHA-KRAYRELVLLKCVNH 82
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 113 IGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEH 164
IG G G+ AA LG+NV + PF N + +R+L L C+ H
Sbjct: 30 IGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHA-KRAYRELVLLKCVNH 80
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 108 LDLVVIGCGPAGLALAAESAKL 129
+D++++GCGPAGL LAA+ A
Sbjct: 33 VDVLIVGCGPAGLTLAAQLAAF 54
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 91 QSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143
+SK+ ++ + +G+ +L IG G G+ AA A L NV + PF
Sbjct: 41 KSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ 100
Query: 144 NNYGVWEDEFRDLGLEGCIEH 164
N + +R+L L C+ H
Sbjct: 101 NQTHA-KRAYRELVLMKCVNH 120
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 91 QSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143
+SK+ ++ + +G+ +L IG G G+ AA A L NV + PF
Sbjct: 3 KSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ 62
Query: 144 NNYGVWEDEFRDLGLEGCIEH 164
N + +R+L L C+ H
Sbjct: 63 NQTHA-KRAYRELVLMKCVNH 82
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLI 136
D+V++G GP+GL A E K GL+V ++
Sbjct: 9 DVVIVGAGPSGLTAARELKKAGLSVAVL 36
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 91 QSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143
+SK+ ++ + +G+ +L IG G G+ AA A L NV + PF
Sbjct: 2 KSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ 61
Query: 144 NNYGVWEDEFRDLGLEGCIEH 164
N + +R+L L C+ H
Sbjct: 62 NQTHA-KRAYRELVLMKCVNH 81
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 91 QSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143
+SK+ ++ + +G+ +L IG G G+ AA A L NV + PF
Sbjct: 3 KSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ 62
Query: 144 NNYGVWEDEFRDLGLEGCIEH 164
N + +R+L L C+ H
Sbjct: 63 NQTHA-KRAYRELVLMKCVNH 82
>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562
Length = 364
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 91 QSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143
+SK+ ++ + +G+ +L IG G G+ AA A L NV + PF
Sbjct: 3 KSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ 62
Query: 144 NNYGVWEDEFRDLGLEGCIEH 164
N + +R+L L C+ H
Sbjct: 63 NQTHA-KRAYRELVLMKCVNH 82
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 91 QSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 143
+SK+ ++ + +G+ +L IG G G+ AA A L NV + PF
Sbjct: 41 KSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ 100
Query: 144 NNYGVWEDEFRDLGLEGCIEH 164
N + +R+L L C+ H
Sbjct: 101 NQTHA-KRAYRELVLMKCVNH 120
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGP 138
D+VV+G GP G A +A+LGL+ ++ P
Sbjct: 7 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEP 36
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGP 138
D+VV+G GP G A +A+LGL+ ++ P
Sbjct: 5 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEP 34
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLI 136
D+V+IG GPAG A ++A+LG N +
Sbjct: 7 DVVIIGGGPAGYVAAIKAAQLGFNTACV 34
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 104 GNGILDLVVIGCGPAGLALAAESAKLGLNVGL 135
G DL+VIG G GLA A E+A+LG V +
Sbjct: 3 GQQSFDLLVIGGGSGGLACAKEAAQLGKKVAV 34
>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
pdb|2R9S|B Chain B, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline
Inhibitor
Length = 356
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEH 164
+L IG G G+ AA A L NV + PF N + +R+L L C+ H
Sbjct: 21 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA-KRAYRELVLMKCVNH 75
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 104 GNGILDLVVIGCGPAGLALAAESAKLGLNVGL 135
G DL+VIG G GLA A E+A+LG V +
Sbjct: 29 GQQSFDLLVIGGGSGGLACAKEAAQLGKKVAV 60
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEH 164
+L IG G G+ AA A L NV + PF N + +R+L L C+ H
Sbjct: 22 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA-KRAYRELVLMKCVNH 76
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLI 136
D+ ++G GP+GLA A K GL+V +I
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVI 34
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEH 164
+L IG G G+ AA A L NV + PF N + +R+L L C+ H
Sbjct: 21 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA-KRAYRELVLMKCVNH 75
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLI 136
D+ ++G GP+GLA A K GL+V +I
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVI 34
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFRDLGLEGCIEH 164
+L IG G G+ AA A L NV + PF N + +R+L L C+ H
Sbjct: 22 NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA-KRAYRELVLMKCVNH 76
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLI 136
D+ ++G GP+GLA A K GL+V +I
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVI 34
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 88 MDKQSKLADKLPPISIGNGIL-------DLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 140
M +SK + + IG+ +L IG G G+ AA A L NV +
Sbjct: 1 MGSRSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 60
Query: 141 PFTNNYGVWEDEFRDLGLEGCIEH 164
PF N + +R+L L C+ H
Sbjct: 61 PFQNQTHA-KRAYRELVLMKCVNH 83
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGLI 136
DL+VIG GP G A ++A+LG V ++
Sbjct: 27 DLIVIGSGPGGYVCAIKAAQLGXKVAVV 54
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNV 133
DL+VIG GP G A +A+LGL V
Sbjct: 8 DLIVIGTGPGGYHAAIRAAQLGLKV 32
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
Length = 522
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 28/116 (24%)
Query: 252 EYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDCTKQEVPSFESDNPTFLYVMPM 311
E V GP+ +V+ Y E++ +NP D KQ + +
Sbjct: 434 EIAVTGPEGAVRILYRKEIQQASNP-----------DDVLKQRIAEY------------- 469
Query: 312 SSTRVFFEETCLASKDGLPFDILKKKLMARLERLGIQVLKTYEEEWSYIPVGGSLP 367
R F A++ GL D+++ K R+ G+++LKT + E+ Y G++P
Sbjct: 470 ---RKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKT-KREYRYPKKHGNIP 521
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 108 LDLVVIGCGPAGLALAAESAKLGLNVGLI 136
D+VVIG GP G A +A+LGL I
Sbjct: 4 FDVVVIGAGPGGYVAAIRAAQLGLKTACI 32
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 111 VVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDEFRDL 156
+V+G GP GL A E A LG V L+ + F+ N +W DL
Sbjct: 96 LVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDL 143
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 111 VVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDEFRDL 156
+V+G GP GL A E A LG V L+ + F+ N +W DL
Sbjct: 88 LVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDL 135
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
Length = 543
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 101 ISIGNGILDLVVIGCGPAGLALAAES-----AKLGLNVGLIGPDLPFTNNYGVWEDEFRD 155
I I +G++ LVV GP GL E+ ++ G+N+ DLP G+ E + RD
Sbjct: 186 IYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGAQVDLP-----GLSEQDVRD 240
Query: 156 L--GLEGCIEHVW 166
L G+E ++ V+
Sbjct: 241 LRFGVEHGVDIVF 253
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 108 LDLVVIGCGPAGLALAAESAKLGLNVGLI 136
DL+ IG G GLA+A ++A G V LI
Sbjct: 5 FDLIAIGGGSGGLAVAEKAAAFGKRVALI 33
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|B Chain B, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|C Chain C, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|D Chain D, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp
Length = 543
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 101 ISIGNGILDLVVIGCGPAGLALAAES-----AKLGLNVGLIGPDLPFTNNYGVWEDEFRD 155
I I +G++ LVV GP GL E+ ++ G+N+ DLP G+ E + RD
Sbjct: 186 IYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGAQVDLP-----GLSEQDVRD 240
Query: 156 L--GLEGCIEHVW 166
L G+E ++ V+
Sbjct: 241 LRFGVEHGVDIVF 253
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
Length = 528
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 101 ISIGNGILDLVVIGCGPAGLALAAES-----AKLGLNVGLIGPDLPFTNNYGVWEDEFRD 155
I I +G++ LVV GP GL E+ ++ G+N+ DLP G+ E + RD
Sbjct: 171 IYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGAQVDLP-----GLSEQDVRD 225
Query: 156 L--GLEGCIEHVW 166
L G+E ++ V+
Sbjct: 226 LRFGVEHGVDIVF 238
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
Length = 528
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 101 ISIGNGILDLVVIGCGPAGLALAAES-----AKLGLNVGLIGPDLPFTNNYGVWEDEFRD 155
I I +G++ LVV GP GL E+ ++ G+N+ DLP G+ E + RD
Sbjct: 171 IYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGAQVDLP-----GLSEQDVRD 225
Query: 156 L--GLEGCIEHVW 166
L G+E ++ V+
Sbjct: 226 LRFGVEHGVDIVF 238
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|B Chain B, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|C Chain C, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|D Chain D, Human Erythrocyte Pyruvate Kinase: T384m Mutant
Length = 528
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 101 ISIGNGILDLVVIGCGPAGLALAAES-----AKLGLNVGLIGPDLPFTNNYGVWEDEFRD 155
I I +G++ LVV GP GL E+ ++ G+N+ DLP G+ E + RD
Sbjct: 171 IYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGAQVDLP-----GLSEQDVRD 225
Query: 156 L--GLEGCIEHVW 166
L G+E ++ V+
Sbjct: 226 LRFGVEHGVDIVF 238
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
Length = 528
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 101 ISIGNGILDLVVIGCGPAGLALAAES-----AKLGLNVGLIGPDLPFTNNYGVWEDEFRD 155
I I +G++ LVV GP GL E+ ++ G+N+ DLP G+ E + RD
Sbjct: 171 IYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGAQVDLP-----GLSEQDVRD 225
Query: 156 L--GLEGCIEHVW 166
L G+E ++ V+
Sbjct: 226 LRFGVEHGVDIVF 238
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 109 DLVVIGCGPAGLALAAESAKLGLNVGL 135
+L V+G GPAGLA A +A G V L
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQVTL 401
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 201 CVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASGAASGKLLEYEVG 256
C ++G +++ +V++ T L ACEH+ +VP + T A G A G L G
Sbjct: 258 CTDNGAVFVADEVQTGFARTGA--LFACEHENVVPDLIVT-AKGIAGGLPLSAVTG 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,585,468
Number of Sequences: 62578
Number of extensions: 541205
Number of successful extensions: 1583
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1535
Number of HSP's gapped (non-prelim): 73
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)